HHsearch alignment for GI: 254781101 and conserved domain: PRK01438

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=386.59  Aligned_cols=333  Identities=23%  Similarity=0.279  Sum_probs=247.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             69939998303654201233467777520112221221101457410-00123221444301566443321121223232
Q gi|254781101|r  106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP  184 (472)
Q Consensus       106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P  184 (472)
T Consensus       120 ~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~l~~~~~~~~~d~~V~ElSSfq---L~~-~~~~~p  191 (481)
T PRK01438        120 TPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGN----IGVPVLDAVRGPDGYDVLAVELSSFQ---LHW-APSVRP  191 (481)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHCCCCCCCEEEEECCCCC---CCC-CCCCCC
T ss_conf             8887899938997460999999999966997079962----56777764228888608999804765---133-445576


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             20255531210123444578888654331037622101210134246899875201233333222222222--2222344
Q gi|254781101|r  185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRK  262 (472)
Q Consensus       185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~  262 (472)
T Consensus       192 ~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~~~--~~v~n~dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~  269 (481)
T PRK01438        192 HSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV--ACVYNVADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVD  269 (481)
T ss_pred             CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE--EEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEC
T ss_conf             48997068777866523598999999998627851--4997057788999998602244770788735888712012103


Q ss_pred             CCCCCCCCCCCCCC-CC-CCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf             21134651001245-65-432-2122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r  263 WKQCSEQSWMEVQL-QG-KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF  339 (472)
Q Consensus       263 i~~~~~~~~~~~~~-~~-~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~  339 (472)
T Consensus       270 ~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~aL~~F~Gl~hR~E~v---~~~~GV  345 (481)
T PRK01438        270 GILVDR-AFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDGLRAFRPDAHRIEHV---ADADGV  345 (481)
T ss_pred             CEEEEC-EEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE---EEECCE
T ss_conf             455302-0343023453000106640676576999999999999982998899998886348977337899---999999


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf             33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r  340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP  419 (472)
Q Consensus       340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~  419 (472)
T Consensus       346 ~fiNDSKaTN~~A~~~AL~~~~--------~i~lI~GG-----~~Kg~d~~~l~~~~~~-~vk~~~l~G~~~~~i~~~~~  411 (481)
T PRK01438        346 TYVDDSKATNPHAAEASLAAYP--------SVVWIAGG-----LAKGAHFDDLVRAHAA-RLRGVVLIGADRALIREALA  411 (481)
T ss_pred             EEECCCCCCCHHHHHHHHHHCC--------CEEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHH
T ss_conf             9980688789889999987249--------88999378-----6578898999999860-13399997789999999997


Q ss_pred             CCC---CEE-----EECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHH
Q ss_conf             379---799-----9789899999999844789899997---71---------32548999999998
Q gi|254781101|r  420 RSI---HVH-----YSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE  466 (472)
Q Consensus       420 ~~~---~~~-----~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~  466 (472)
T Consensus       412 ~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~l~g  478 (481)
T PRK01438        412 RHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLLAPACASMDMFTNYAERGEAFAAAVRHLLG  478 (481)
T ss_pred             HCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             2289874577310237899999999996389989899895000202206999999999999997237