HHsearch alignment for GI: 254781101 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=386.59 Aligned_cols=333 Identities=23% Similarity=0.279 Sum_probs=247.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410-00123221444301566443321121223232
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
T Consensus 120 ~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~l~~~~~~~~~d~~V~ElSSfq---L~~-~~~~~p 191 (481)
T PRK01438 120 TPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGN----IGVPVLDAVRGPDGYDVLAVELSSFQ---LHW-APSVRP 191 (481)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHCCCCCCCEEEEECCCCC---CCC-CCCCCC
T ss_conf 8887899938997460999999999966997079962----56777764228888608999804765---133-445576
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 20255531210123444578888654331037622101210134246899875201233333222222222--2222344
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRK 262 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~ 262 (472)
T Consensus 192 ~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~~~--~~v~n~dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~ 269 (481)
T PRK01438 192 HSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV--ACVYNVADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVD 269 (481)
T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE--EEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEC
T ss_conf 48997068777866523598999999998627851--4997057788999998602244770788735888712012103
Q ss_pred CCCCCCCCCCCCCC-CC-CCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf 21134651001245-65-432-2122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r 263 WKQCSEQSWMEVQL-QG-KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472)
Q Consensus 263 i~~~~~~~~~~~~~-~~-~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472)
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~aL~~F~Gl~hR~E~v---~~~~GV 345 (481)
T PRK01438 270 GILVDR-AFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDGLRAFRPDAHRIEHV---ADADGV 345 (481)
T ss_pred CEEEEC-EEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE---EEECCE
T ss_conf 455302-0343023453000106640676576999999999999982998899998886348977337899---999999
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472)
Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472)
T Consensus 346 ~fiNDSKaTN~~A~~~AL~~~~--------~i~lI~GG-----~~Kg~d~~~l~~~~~~-~vk~~~l~G~~~~~i~~~~~ 411 (481)
T PRK01438 346 TYVDDSKATNPHAAEASLAAYP--------SVVWIAGG-----LAKGAHFDDLVRAHAA-RLRGVVLIGADRALIREALA 411 (481)
T ss_pred EEECCCCCCCHHHHHHHHHHCC--------CEEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHH
T ss_conf 9980688789889999987249--------88999378-----6578898999999860-13399997789999999997
Q ss_pred CCC---CEE-----EECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHH
Q ss_conf 379---799-----9789899999999844789899997---71---------32548999999998
Q gi|254781101|r 420 RSI---HVH-----YSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466 (472)
Q Consensus 420 ~~~---~~~-----~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~ 466 (472)
T Consensus 412 ~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~l~g 478 (481)
T PRK01438 412 RHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLLAPACASMDMFTNYAERGEAFAAAVRHLLG 478 (481)
T ss_pred HCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 2289874577310237899999999996389989899895000202206999999999999997237