HHsearch alignment for GI: 254781101 and conserved domain: PRK03803
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=400.87 Aligned_cols=330 Identities=23% Similarity=0.271 Sum_probs=257.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
T Consensus 106 ~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~~~~VlElSSfqL---~~-~~~~~p 176 (448)
T PRK03803 106 AAKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGN----LGTPALDL-LSDDVELYVLELSSFQL---ET-TDQLNA 176 (448)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----CCCHHHHH-HCCCCCEEEEECCCCHH---HC-CCCCCC
T ss_conf 17898899858998388999999999865983799403----27613665-25888789998664112---03-545686
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20255531210123444578888654331037622101210134246899875201233333222222222222234421
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~ 264 (472)
T Consensus 177 ~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~~~---~v~n~Dd~~~~~l~~~~-----~~~~~f~~~~~-~~~~~~~~ 247 (448)
T PRK03803 177 EVATVLNISEDHLDRHGGMLAYHQAKHRIFRGAKQ---VVVNRDDALTRPLVADG-----TPCWSFGLNAP-DFGAFGLR 247 (448)
T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHCC-----CCEEEEECCCC-CCCCCCEE
T ss_conf 28998358753654633899999998777538878---99958608888886548-----85799835776-51223169
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE
Q ss_conf 13465100124565432212222222233332210356765101210345543114766443310100036531133100
Q gi|254781101|r 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472)
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~Gl~hR~E~v---~~~~Gv~fiND 324 (448)
T PRK03803 248 EEDGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKGLEHRCQWV---REVDGVRYYND 324 (448)
T ss_pred ECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EECCCEEEEEC
T ss_conf 539839996165321433330767623599899999999982998789899886355712057999---96188899968
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCE
Q ss_conf 02565321012577787411102687138851235417105899999999998649989999880389899851137979
Q gi|254781101|r 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 (472)
Q Consensus 345 sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~ 424 (472)
T Consensus 325 SKaTN~~at~~Al~~~~~~---~~~~iilI~G-----G~~K~~d~~~l~~~~~~~-v~~v~l~G~~~~~i~~~l~~~~~~ 395 (448)
T PRK03803 325 SKGTNVGATLAAIEGLGAD---IEGKLVLIAG-----GQGKGADFSELREPVAKY-CRAVVLIGRDAELIEQALGDAVPL 395 (448)
T ss_pred CCCCCHHHHHHHHHHHHHH---CCCCEEEEEC-----CCCCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHHCCCCCE
T ss_conf 9989978999999964652---3686899937-----866666879999999736-609999795999999975068987
Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 99789899999999844789899997---71---------325489999999
Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 396 ~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L 447 (448)
T PRK03803 396 VRAATLEEAVTQAAELAQPGDAVLLSPACASLDMFKNFEERGRQFAQAVEGL 447 (448)
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9949999999999985789898998974402013179999999999999975