HHsearch alignment for GI: 254781101 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=372.50 Aligned_cols=319 Identities=21% Similarity=0.234 Sum_probs=238.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
T Consensus 106 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQL---e~-~~~~~p~ 176 (438)
T PRK04663 106 VDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGN----IGVPALDL-LEQDAELYVLELSSFQL---ET-TSSLKLK 176 (438)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHH-HHCCCCEEEEECCCCCH---HH-HCCCCCC
T ss_conf 5897899948998289999999999828997068721----57168875-30469789984451014---34-0356863
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02555312101234445788886543310376221012101342468998752012333332222222222222344211
Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 (472)
Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~ 265 (472)
T Consensus 177 iavilNIs~DHLD~h~s~e~Y~~aK~rIf~~~---~~~Ivn~dd~~~~~--~~~----~~~~~~fg~~~~-~~~~~~--- 243 (438)
T PRK04663 177 AAAFLNLSEDHMDRYQGMADYRQAKLRIFDHA---ELAVVNRDDKQTYP--DTA----SLQLVTFGFDQQ-EYGLIE--- 243 (438)
T ss_pred CHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEECCCHHHHHH--HHC----CCCEEEEECCCC-CCCEEE---
T ss_conf 33440688768777369999999999985369---78998653598887--760----785799604620-165597---
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE
Q ss_conf 34651001245654-32212222222233332210356765101210345543114766443310100036531133100
Q gi|254781101|r 266 CSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472)
T Consensus 244 -~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~glpHRlE~v---~~~~gv~~iND 319 (438)
T PRK04663 244 -HQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYNGLTHRCQVV---ADNRGIKWVND 319 (438)
T ss_pred -ECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEEECC
T ss_conf -27869998588776631430566455687799999999983999789865653358988752899---99899999747
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCE
Q ss_conf 02565321012577787411102687138851235417105899999999998649989999880389899851137979
Q gi|254781101|r 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 (472)
Q Consensus 345 sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~ 424 (472)
T Consensus 320 SKaTN~~a~~~Al~~~~~-----~~~i~lI~GG-----~~Kg~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~---~~~ 385 (438)
T PRK04663 320 SKATNVASTLAALSGLNL-----EGKLYLLVGG-----VGKGADFSELKPVLATL-NLQLCCFGEDGDQFMPLH---PSA 385 (438)
T ss_pred CCCCCHHHHHHHHHHCCC-----CCCEEEEECC-----CCCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHC---CCC
T ss_conf 877887899999983677-----7847999657-----66666879999998523-769999888899997432---453
Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 99789899999999844789899997---71---------325489999999
Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 386 ~~~~~l~~Av~~a~~~a~~gd~vLlSPacaSfD~F~nyeeRG~~F~~lv~~l 437 (438)
T PRK04663 386 RRFETMEDAIESISPQLKSGDMVMLSPACASFDQFANFMARGDAFAELAKQY 437 (438)
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4406799999999986779998998974403003069999999999999974