HHsearch alignment for GI: 254781101 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=369.19 Aligned_cols=325 Identities=19% Similarity=0.205 Sum_probs=239.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC
Q ss_conf 69939998303654201233467777520112221221101457410-001232214443015664433211212-2323
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLT-HLVR 183 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~-~i~~ 183 (472)
T Consensus 113 ~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~P~~~~~~~~~~~d~~VlElSSfQ---Le~~~~~~~~ 185 (468)
T PRK04690 113 SVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN----IGQPLLEVLAPQPAPAYWAIELSSYQ---TGDVGRSGAR 185 (468)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHHHHHCCCCCCCEEEEEECCCH---HHHHHHCCCC
T ss_conf 6787899969985899999999999857998289867----76446765324788857999943205---7654531478
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22025553121012344457888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472)
Q Consensus 184 P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472)
T Consensus 186 p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~~~-~~vin~~D~~~~~~~~-----~~~~v~~~~~~~~--~~~~~~ 257 (468)
T PRK04690 186 PELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGRPR-IALLNAADPRLAALQL-----PDSEVRWFNHPDG--WHVRGD 257 (468)
T ss_pred CCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCC-EEEEECCCHHHHHHHC-----CCCCEEEECCCCC--EEECCC
T ss_conf 7787530488878746089999999999999657997-7999788889997525-----7784699517775--376066
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf 1-134651001245654322122222222333322103567651012103455431147664433101000365311331
Q gi|254781101|r 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472)
Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472)
T Consensus 258 ~~~~~~~~~~--------~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~I~~aL~sF~glpHRlE~v---~~~~gv~fi 326 (468)
T PRK04690 258 VVYRGEQAIF--------DTANVPLPGRHNRGNLCAVLAALEALGLDAAALAPAAASFRPLPNRLQEL---GSVDGITYV 326 (468)
T ss_pred EEEECCCCEE--------CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEEEE
T ss_conf 7883562011--------11236777700487699999999983898899999874267999752799---998999997
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC--
Q ss_conf 000256532101257778741110268713885123541710589999999999864998999988038989985113--
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-- 420 (472)
T Consensus 327 NDSKATN~~a~~~AL~~f~~------~~iilI~GG-----~~Kg~d~~~l~~~~~~~~~~~vi~~G~~~~~i~~~~~~~~ 395 (468)
T PRK04690 327 NDSISTTPHASLAALDCFAG------RRVALLVGG-----HDRGLDWTDFAAHMAQQAPLEIVTMGANGPRIHALLAPLA 395 (468)
T ss_pred CCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 37877898999999972766------857999736-----7667787999999863376899997478899999975234
Q ss_pred ---CCCEEEECCHHHHHHHHHHH-CCCCCEEEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf ---79799978989999999984-4789899997---71---------325489999999985
Q gi|254781101|r 421 ---SIHVHYSETMDGLFLFIQSS-LVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 421 ---~~~~~~~~~~e~a~~~l~~~-~~~gdiVLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
T Consensus 396 ~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLSPacASfD~F~nyeeRG~~Fk~L~~~~~~~ 458 (468)
T PRK04690 396 DAGRFGLHAADDLPHAMALARTALGAQGGVVLLSPGAPSFGAYRDYVARGRHFAQLAGFDPAA 458 (468)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 456310254067999999999960589998997953115004179999999999987808777