HHsearch alignment for GI: 254781101 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=839.08 Aligned_cols=431 Identities=29% Similarity=0.410 Sum_probs=397.3
Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 71474677402223789888971688747688899999869889998552124554469728995998999999999998
Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472)
Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472)
T Consensus 511 ~~~~~~isiDSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~----~~~~~p~I~V~Dt~~AL~~lA~~~r 586 (953)
T PRK11929 511 KEISGAVSTDSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQV----ADVALPQLVLGDTLAALGRMATAWR 586 (953)
T ss_pred HHHCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCC----CCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 876185674377368898899971487777999999998699799992566----6678897996898999999999999
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH----HHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 30699399983036542012334677775----20112221221101457410001232214443015664433211212
Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 (472)
Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~----~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~ 179 (472)
T Consensus 587 ~~~~~~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN~iGvPltll~l~~~~~~aVlEmGms~~GEI~~L~ 666 (953)
T PRK11929 587 SSFSLPVIAITGSNGKTTTKEMIAAILAQWQGDDGRVTATEGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIARLA 666 (953)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 75799789996788507899999999985177784388556743786667178757996346578765289622699860
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23232202555312101234445788886543310376221012101342468998752012333332222222222222
Q gi|254781101|r 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 (472)
Q Consensus 180 ~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~ 259 (472)
T Consensus 667 ~i~~PdiaVITNIg~aHLe~fgs~e~Ia~aK~eIf~~l~~~g~aIlN~DD~~~~~~~~~~~~~~i-~~fg~~~~~~adi~ 745 (953)
T PRK11929 667 AIAAPTVALVTNAQREHQEFLHSVEAVARANGALINALPEDGIAVVNGDDPYAAIWAKLAGARRV-LRFGLSLQPGLDVY 745 (953)
T ss_pred CCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCE-EEEEECCCCCCCEE
T ss_conf 62589778874456998766189999999999998315879799993886889999998457875-99985258987689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf 34421134651001245654322122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472)
Q Consensus 260 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472)
T Consensus 746 ~~~i~~~~~g~~~~~~~~~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~~~gR~e~~~~---~~g~ 822 (953)
T PRK11929 746 AEDIVTQAAGTLCFVVTPAGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQAVKGRMQRRQL---SDGT 822 (953)
T ss_pred EEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEE---CCCE
T ss_conf 9998986896499999789569999568979999999999999999399999999998669999998789995---7997
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472)
Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472)
T Consensus 823 ~iIDDsYNANP~Sm~aAl~~L~~~~---~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG~~~~~~~~~~~ 899 (953)
T PRK11929 823 VIIDDTYNANPDSMRAAIDVLARLP---GPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITLGEASRDAAHAFG 899 (953)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC
T ss_conf 9999784888999999999985287---9986999848500245789999999999997599999998657999986568
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37979997898999999998447898999977132548999999998
Q gi|254781101|r 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472)
Q Consensus 420 ~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472)
T Consensus 900 ~~-~~~~~~~~~~l~~~L~~~l~~~d~VLVKGSR~m~lE~iV~~l~~ 945 (953)
T PRK11929 900 KA-ARACFASVDEIIAALRGLLPSSDIVLIKGSRFMRLERVVTAFST 945 (953)
T ss_pred CC-CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 46-57883999999999985589999999971560469999999972