HHsearch alignment for GI: 254781101 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00 E-value=0 Score=805.25 Aligned_cols=453 Identities=25% Similarity=0.339 Sum_probs=411.9
Q ss_pred CCHHHHHHHHCCEEECCC--CCCEEEEEEEECCCCC--CCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 567889987279995268--8714746774022237--898889716887476888999998698899985521245544
Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472)
Q Consensus 5 ~~~~~l~~~~~g~~~~~~--~~~~i~~i~~dSr~v~--~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472)
T Consensus 3 ~~~~~i~~~~g~~~~g~~~~~~~~I~~i~tDSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~~~~~~ 82 (824)
T PRK11930 3 ISIEELIRVLGANRVGGKTEFDAFIDQLLIDSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPKDLMEK 82 (824)
T ss_pred EEHHHHHHHHCCEEECCCCCCCCEECEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 40999998639788578888883236399358876579986899956788887999999998899099994566554557
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC
Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221
Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472)
Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472)
T Consensus 83 ~~~~~i~V~Dtl~ALq~LA~~~R~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~T~gn~Nn~IGvPLTll~l~~~~ 162 (824)
T PRK11930 83 KPANFLIVKNPLKALQKLAAYYRKQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQMNEEH 162 (824)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 88778998989999999999999748998999949997899999999997457868528876687425899986498458
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC
Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201
Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472)
Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472)
T Consensus 163 e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~~---~~~i~n~d~~~~~~~~~~~~ 239 (824)
T PRK11930 163 ELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFFDIQEKCMEKLKLFKDC---DVIIYNGDNEEISNCIHKSN 239 (824)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHC
T ss_conf 089999078981469999535279999990750987664589999999999976217---81799468578999997633
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 23333322222-22222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472)
Q Consensus 241 ~~~~~~i~~~g-~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472)
T Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava~~lGv~~~~i~~~L~~ 317 (824)
T PRK11930 240 LTR--REIAWSRTDSEAPLYISRSEKKEFHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVALYLMYSADQITKRFAR 317 (824)
T ss_pred CCC--CEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 676--289983478665346665430588169999968906999936998899999999999999839999999999841
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472)
Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472)
T Consensus 318 ~~p~~~Rlev~~---g~~g~~iIdDsYNAnP~Sm~aALdtL~~~~~--~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~ 392 (824)
T PRK11930 318 LEPVEMRLEVKE---GINNCTLINDSYNSDLASLDIALDFLERRKQ--SKKKTLILSDILQSGQSPEELYRKVAQLISSA 392 (824)
T ss_pred CCCCCCEEEEEE---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 896545137999---7998099956666998999999999974035--78569998774432876078999999999976
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 998999988038989985113797999789899999999844789899997713254899999999850
Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
T Consensus 393 ~i~~ligiG~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~iLikGar~~~~e~i~~~l~~~~ 460 (824)
T PRK11930 393 KINRVIGIGEEISSEAKKFE-GIEKYFFKDTEAFLASLEKKKFSNELILIKGSRKFQFEQISERLELKV 460 (824)
T ss_pred CCCEEEEECHHHHHHHHHCC-CCCEEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 88789981889999998645-776589568999974274113689779980554566899999996455