HHsearch alignment for GI: 254781101 and conserved domain: TIGR01081
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=100.00 E-value=1.4e-37 Score=267.81 Aligned_cols=397 Identities=23% Similarity=0.293 Sum_probs=280.8
Q ss_pred HHHHHHHCCEEECCCCCCEEEEEEEECCCCCC--CCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE
Q ss_conf 88998727999526887147467740222378--9888971688747688899999869889998552124554469728
Q gi|254781101|r 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 (472)
Q Consensus 8 ~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~--g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~ 85 (472)
T Consensus 38 ST~LE~~GIe~~~g----------fD~~QL~~~~pD~~vi-GNa~~RG~p~VE~vL~~nl~Y~-------------SGPQ 93 (459)
T TIGR01081 38 STLLEAQGIEIIEG----------FDAAQLEPFKPDLVVI-GNAMKRGNPCVEAVLEKNLPYT-------------SGPQ 93 (459)
T ss_pred HHHHHHCCCEEECC----------CCHHHCCCCCCCEEEE-CCCCCCCCHHHHHHHHCCCCCC-------------CCCC
T ss_conf 68887557303227----------7844400348887998-4633167446789872689502-------------1751
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCCHHHHHCCCCCCCHHCC-----
Q ss_conf 99599899999999999830699399983036542012334677775201-----12221221101457410001-----
Q gi|254781101|r 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-----TYACIGSYNNHIGVPLTLAR----- 155 (472)
Q Consensus 86 i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~-----~~~t~gn~Nn~iGvpltll~----- 155 (472)
T Consensus 94 WL~d~~L----------~---drWVlaV~GTHGKTTT~~M~~WvLE~~G~~pGFliGGv~gNF----gvSArLg~~pr~d 156 (459)
T TIGR01081 94 WLHDFVL----------R---DRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF----GVSARLGETPRQD 156 (459)
T ss_pred HHHHHHH----------H---CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCC----CEEEECCCCCCCC
T ss_conf 0563342----------1---342789507886046889999999863798872673424534----2142068775667
Q ss_pred CCCCCHHHHHCCCCCCCC--CCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHH
Q ss_conf 232214443015664433--211212232--3220255531210123444578888654331037622101210134246
Q gi|254781101|r 156 MPVDVDFGIFELGMSHLG--EIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 (472)
Q Consensus 156 ~~~~~~~~V~E~g~~~~g--ei~~L~~i~--~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~ 231 (472)
T Consensus 157 p~~~S~fFviEAD--EYD~AFFDKRSKFVHY~PRTlvlNNleFDHADIFddL~AI~~QFHhlvR~vP~~G~i~~~~~~~~ 234 (459)
T TIGR01081 157 PNSQSPFFVIEAD--EYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILAPERDQS 234 (459)
T ss_pred CCCCCCEEEEECC--CCCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCHHHH
T ss_conf 4546875799535--65651002543312027600145155544455787689987403068896468864843501468
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89987520123333322222222222223442113465100124565432-21222222223333221035676510121
Q gi|254781101|r 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310 (472)
Q Consensus 232 ~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~ 310 (472)
T Consensus 235 l~~~l~~GCWs~~e---~~G--~~~~W~A~~~--~~D~S~f~Vll~G~~vg~VkW~lvG~HN~~NaL~aIAAArHvGV~~ 307 (459)
T TIGR01081 235 LKDTLAKGCWSEQE---FLG--EQGEWQAEKI--TADASEFEVLLDGEKVGEVKWSLVGEHNMHNALMAIAAARHVGVAI 307 (459)
T ss_pred HHHHHHHCCCCCHH---CCC--CCCCHHHHHH--CCCCHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 99998606872011---246--7775057654--0451000220178436776533304600135899998742167687
Q ss_pred HHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEC----CHHHCCCCHH
Q ss_conf 034554311476644331010003653113310002565321012577787411102687138851----2354171058
Q gi|254781101|r 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMGELSQ 386 (472)
Q Consensus 311 ~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG----~m~ELG~~~~ 386 (472)
T Consensus 308 ~~Ac~ALG~F~N~k---RRlE~kG~~Ng~TVYDD-FAHHP~AI~~Tl~~LR~k-VGG~~rIlAVLEPRSnTMK-lG~~K~ 381 (459)
T TIGR01081 308 EDACEALGSFVNAK---RRLELKGEANGVTVYDD-FAHHPTAIEATLAALRDK-VGGGARILAVLEPRSNTMK-LGVHKD 381 (459)
T ss_pred HHHHHHHCCCCCCC---EEEEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCC-CCCCHH
T ss_conf 89998703200120---01567211313787327-667868999999998752-3997069998778744100-343255
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-HHH-HHHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999999999986499899998803-898-9985113-7979997898999999998447898999977132548999999
Q gi|254781101|r 387 SFHIDLAEVLSLYNISHVWLSGFH-VLA-LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 (472)
Q Consensus 387 ~~h~~i~~~~~~~~~d~v~~~G~~-~~~-~~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~ 463 (472)
T Consensus 382 ~----la~sL~--~AD~Vf~~~p~~~~W~V~e~~~~~~~p~~~~~~~D~~v~~ivk~A~~gD~ILVM-SNG-gFgGIH~K 453 (459)
T TIGR01081 382 D----LAPSLG--RADEVFLLQPEQIPWEVAEVAEQCVQPANVSADLDELVAMIVKEAQPGDHILVM-SNG-GFGGIHGK 453 (459)
T ss_pred H----HHHHHH--HCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECC-CCCHHHHH
T ss_conf 6----667666--003565316898870599999860240211010789999999605888758997-468-86406899
Q ss_pred HHHHC
Q ss_conf 99850
Q gi|254781101|r 464 LLEEF 468 (472)
Q Consensus 464 L~~~~ 468 (472)
T Consensus 454 lL~~L 458 (459)
T TIGR01081 454 LLDAL 458 (459)
T ss_pred HHHHC
T ss_conf 99852