HHsearch alignment for GI: 254781101 and conserved domain: TIGR01499

>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=100.00  E-value=1.2e-33  Score=241.81  Aligned_cols=350  Identities=20%  Similarity=0.251  Sum_probs=223.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-HHHHCCC---CCH--HHHHCCC---CCCCH---------
Q ss_conf             8999999999998306993999830365420123346777-7520112---221--2211014---57410---------
Q gi|254781101|r   91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTY---ACI--GSYNNHI---GVPLT---------  152 (472)
Q Consensus        91 ~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL-~~~~~~~---~t~--gn~Nn~i---Gvplt---------  152 (472)
T Consensus         4 ~~~ll~~LG~P~~~~~a~~~IHVaGTNGKGST~a~l~~iL~~~~G~~VG~fTSPHl~~f~ERI~~nG~~i~d~~~~~~~~   83 (460)
T TIGR01499         4 MKKLLEALGNPHQDLNALPVIHVAGTNGKGSTCAFLESILREAAGYKVGLFTSPHLVSFNERIRVNGEPISDEELAQAFE   83 (460)
T ss_pred             HHHHHHHCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEECCEECCHHHHHHHHH
T ss_conf             88999970887379248977999720687589999999988753977888873738742234789885768899999999


Q ss_pred             -------------------------HCC----CC-CCCHHHHHCCCCCCCCCCCCCCCCCC-CCEEEEEEECCCHHHHHH
Q ss_conf             -------------------------001----23-22144430156644332112122323-220255531210123444
Q gi|254781101|r  153 -------------------------LAR----MP-VDVDFGIFELGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFS  201 (472)
Q Consensus       153 -------------------------ll~----~~-~~~~~~V~E~g~~~~gei~~L~~i~~-P~iaiiTNI~~dHld~~~  201 (472)
T Consensus        84 ~~~~~~~~~~~~~~~~~~t~FE~~T~~Af~~F~~~~~vd~av~EVGlG--GrlDa-TNv~~~p~~~~iT~ig~DH~~~LG  160 (460)
T TIGR01499        84 QVRPILKKLSQETEYSQPTFFELLTLLAFLYFAQLAQVDVAVLEVGLG--GRLDA-TNVVEKPLVSVITSIGLDHTEILG  160 (460)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCCC-CCCCCCCEEEEECCCCHHHHHHHC
T ss_conf             999987533101358777789999999999999850882899987376--54455-441138637997277768886505


Q ss_pred             -HHHHHHHHHHHHCCCCCCCCHHHHCC-CC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -57888865433103762210121013-42-4689987520123333322222222222223442113465100124565
Q gi|254781101|r  202 -GIEEIASAKAEIFEGLEKTGTIFLNY-DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG  278 (472)
Q Consensus       202 -s~e~i~~~K~~i~~~l~~~g~~ViN~-Dd-~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~  278 (472)
T Consensus       161 ~t~~~IA~eKAGI~k~g~P---~v~~~~~~~ea~~v~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~~g~~~~~~~~~  233 (460)
T TIGR01499       161 DTLEEIAWEKAGIIKEGVP---IVTGEVQEPEALEVLKKKAEEKGAAPLQVVGK----DFDIKEKDENLNGEKFSFSGEN  233 (460)
T ss_pred             CCHHHHHHHHHHHHCCCCC---EEEECCCCHHHHHHHHHHHHHHCCCEEEEECC----CCCCCCCCCCCCCCEEEECCCC
T ss_conf             3379999974576216765---68714886689999999999716860465034----1322111122465212223555


Q ss_pred             C-CCCC--CCCCCCCCCCCCCCCHHHHHHHHC------CCCHHHH-HHHHCCCCCCCCCCCCEECCCC---CCEEEEEEC
Q ss_conf             4-3221--222222223333221035676510------1210345-5431147664433101000365---311331000
Q gi|254781101|r  279 K-SMEV--VHHGIGYHMAQNMLMTLGIVSILT------ADVDTAI-KALSVFHPKEGRGKRYRCALNQ---GFFTLIDES  345 (472)
Q Consensus       279 ~-~~~~--~l~~~G~hnv~NalaAia~~~~lG------i~~~~i~-~~L~~~~~~~GR~~~~~~~~~~---~~~~iIDDs  345 (472)
T Consensus       234 ~~~~~~~~~~~L~G~~Q~~Na~~A~~~~~~l~~~~~~~~~~~~~~~~GL~~~~-wpGR~e~~~~~~~~~~~~p~~~lDGA  312 (460)
T TIGR01499       234 LFLEPLLAKLSLLGDHQAENAALALAALEVLGKQSSEKLSEAAIRSEGLASTI-WPGRLEILSEDKDAKAANPNILLDGA  312 (460)
T ss_pred             CCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHCCCEEEEECC
T ss_conf             42100135556567999999999999999850235666676678889888511-12201133035412233871799527


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC----E-EEEECCC------HHHH
Q ss_conf             256532101257778741110268713885123541710589999999999864998----9-9998803------8989
Q gi|254781101|r  346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS----H-VWLSGFH------VLAL  414 (472)
Q Consensus       346 YNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d----~-v~~~G~~------~~~~  414 (472)
T Consensus       313 --HNp~~~~~l~~~~~~-~~~~~~~~~~~~~~l~------~Kd~~~~l~~L~~~-~~~i~~~~~~~~~~~~~~a~~~~~~  382 (460)
T TIGR01499       313 --HNPHSAEALVEWLKE-KEFNGRPITLLFGALA------DKDAAAMLALLREL-VPKIFEEIVYVTPFDYPRALDAADL  382 (460)
T ss_pred             --CCHHHHHHHHHHHHH-HHHCCCCCEEEEEECC------CCCHHHHHHHHHHH-HHHHHCEEEEECCCCCCCCCCHHHH
T ss_conf             --687899999999999-8626997188886113------68878998887874-3565221768617786233675789


Q ss_pred             HHHCCCCC-C-----EEEECCHHHHHHHH---------------------HH--HCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             98511379-7-----99978989999999---------------------98--44789899997713254899999999
Q gi|254781101|r  415 KDALPRSI-H-----VHYSETMDGLFLFI---------------------QS--SLVDGDVVVVKSSNSCGFYRLINLLL  465 (472)
Q Consensus       415 ~~~~~~~~-~-----~~~~~~~e~a~~~l---------------------~~--~~~~gdiVLiKGSr~~~le~iv~~L~  465 (472)
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lVtGSly-----Lvg~v~  457 (460)
T TIGR01499       383 EAAAEAFGSEELEKAAETVSSWREALELAEKLDEAQKVSALIEIAYLLVALEKEKAKADDLILVTGSLY-----LVGEVR  457 (460)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHH-----HHHHHH
T ss_conf             999974054156677876730899997166787655102457789888888750567677378872599-----999999


Q ss_pred             H
Q ss_conf             8
Q gi|254781101|r  466 E  466 (472)
Q Consensus       466 ~  466 (472)
T Consensus       458 ~  458 (460)
T TIGR01499       458 K  458 (460)
T ss_pred             H
T ss_conf             8