HHsearch alignment for GI: 254781101 and conserved domain: TIGR02764
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=91.38 E-value=0.19 Score=28.79 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCC-CCCCHHHHHHHHHH
Q ss_conf 22222222333322103567651012103455431147664433101000365311331000256-53210125777874
Q gi|254781101|r 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-NPASMKAAISVLSQ 362 (472)
Q Consensus 284 ~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNA-nP~S~~aal~~l~~ 362 (472)
T Consensus 24 IL~~L~~~~vk~ATFFlsG~Wae~hP-elvk~-lveI~---~~GH--EI--GsHgY~h~~--~~~l~~E~ikkd~~~a~~ 92 (198)
T TIGR02764 24 ILDTLKEEDVKNATFFLSGSWAERHP-ELVKE-LVEIV---KDGH--EI--GSHGYRHKN--YTTLEDEKIKKDLLRAQE 92 (198)
T ss_pred HHHHHHHCCCCCCCCEEEHHHHHCCH-HHHHH-HHHHH---HCCC--CC--CCCCCCCCC--CCCCCHHHHHHHHHHHHH
T ss_conf 76667655885333024315761277-89999-99998---4484--30--335421242--125876489999999888
Q ss_pred HHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 111026871388512354171058999999999986499899998--803898998511379799978989999999984
Q gi|254781101|r 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 (472)
Q Consensus 363 ~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~--G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~ 440 (472)
T Consensus 93 ~i~~~~g~~p~LlRpP--~G~fn----~~~~~~ae~~GY~~V~WsWHvd-S~DWk-----------NPG~e~iv~~V~~~ 154 (198)
T TIGR02764 93 IIEKLTGKKPTLLRPP--NGAFN----KAVLKLAESLGYTVVHWSWHVD-SLDWK-----------NPGVESIVDRVVKN 154 (198)
T ss_pred HHHHHCCCCEEEEECC--CCCCC----HHHHHHHHHCCCCEEEEECCCC-CCCCC-----------CCCEEHHHHHHHCC
T ss_conf 8865105550165688--98604----6899999973991898624558-83545-----------78610001113312
Q ss_pred CCCCCEEEEE-CCCHH-----HHHHHHHHHHHH
Q ss_conf 4789899997-71325-----489999999985
Q gi|254781101|r 441 LVDGDVVVVK-SSNSC-----GFYRLINLLLEE 467 (472)
Q Consensus 441 ~~~gdiVLiK-GSr~~-----~le~iv~~L~~~ 467 (472)
T Consensus 155 ~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~ 187 (198)
T TIGR02764 155 TKPGDIILLHDASDSAKQTVKALPEIIKKLKEK 187 (198)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 799856987634879744177899998998754