HHsearch alignment for GI: 254781101 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=90.96 E-value=0.15 Score=29.46 Aligned_cols=71 Identities=30% Similarity=0.351 Sum_probs=42.1
Q ss_pred CCCCCEEEECC--CCCCCHH--------HHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 37898889716--8874768--------8899999869889998552124554469728995998999999999998306
Q gi|254781101|r 37 IAPQEAFFAIK--GPHYDGH--------DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 (472)
Q Consensus 37 v~~g~lFval~--g~~~DGh--------~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~ 106 (472)
T Consensus 76 ivegEL--PldflGsRFeGl~PPVV~~p~F---~IRkkA~~vfTLDdYV~~g-------im---taaQ~d~l~~Av~ar~ 140 (315)
T TIGR02782 76 IVEGEL--PLDFLGSRFEGLLPPVVEAPSF---AIRKKAVRVFTLDDYVEAG-------IM---TAAQRDVLREAVAARK 140 (315)
T ss_pred EEEECC--CCCHHHCCCCCCCCCCCCCCCC---HHCCCCCCCCCCHHHHHHC-------CC---CHHHHHHHHHHHHHCC
T ss_conf 266107--5111201100468775565510---1110224104707776404-------45---5789999999997129
Q ss_pred CCCEEEEECCCCCCHHH
Q ss_conf 99399983036542012
Q gi|254781101|r 107 KATIIAITGSVGKTTTK 123 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~ 123 (472)
T Consensus 141 NIlv~GGTGS-GKTTLa 156 (315)
T TIGR02782 141 NILVVGGTGS-GKTTLA 156 (315)
T ss_pred CEEEECCCCC-CHHHHH
T ss_conf 8899814588-579999