Query gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 472
No_of_seqs 233 out of 8252
Neff 8.4
Searched_HMMs 39220
Date Mon May 30 05:07:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781101.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01143 murF UDP-N-acetylmur 100.0 0 0 858.8 26.9 430 32-464 1-462 (462)
2 PRK11929 putative bifunctional 100.0 0 0 839.1 31.2 431 24-466 511-945 (953)
3 PRK10773 murF UDP-N-acetylmura 100.0 0 0 823.4 34.9 447 1-468 1-450 (452)
4 PRK11930 putative bifunctional 100.0 0 0 805.3 31.2 453 5-468 3-460 (824)
5 COG0770 MurF UDP-N-acetylmuram 100.0 0 0 769.0 30.4 450 4-467 2-451 (451)
6 PRK00139 murE UDP-N-acetylmura 100.0 0 0 630.7 31.9 422 5-452 3-453 (481)
7 PRK11929 putative bifunctional 100.0 0 0 592.5 24.9 416 24-452 26-473 (953)
8 TIGR01085 murE UDP-N-acetylmur 100.0 0 0 568.8 24.8 419 24-452 1-470 (494)
9 COG0769 MurE UDP-N-acetylmuram 100.0 0 0 424.8 19.5 408 28-452 11-447 (475)
10 PRK00421 murC UDP-N-acetylmura 100.0 0 0 403.9 26.3 369 63-468 66-458 (459)
11 PRK03803 murD UDP-N-acetylmura 100.0 0 0 400.9 24.2 330 105-464 106-447 (448)
12 PRK02472 murD UDP-N-acetylmura 100.0 0 0 402.2 22.3 324 106-465 110-448 (450)
13 PRK01368 murD UDP-N-acetylmura 100.0 0 0 402.0 21.8 336 101-467 97-449 (450)
14 PRK02006 murD UDP-N-acetylmura 100.0 0 0 392.0 20.0 355 82-467 97-496 (501)
15 PRK01390 murD UDP-N-acetylmura 100.0 0 0 392.9 17.4 322 106-464 112-456 (457)
16 PRK04308 murD UDP-N-acetylmura 100.0 0 0 389.5 18.9 324 104-464 106-445 (445)
17 PRK02705 murD UDP-N-acetylmura 100.0 0 0 389.0 19.2 334 101-467 102-458 (459)
18 PRK01438 murD UDP-N-acetylmura 100.0 0 0 386.6 19.5 333 106-466 120-478 (481)
19 PRK01710 murD UDP-N-acetylmura 100.0 0 0 388.3 16.5 322 106-464 115-458 (458)
20 PRK03806 murD UDP-N-acetylmura 100.0 0 0 378.2 21.1 321 105-464 102-437 (438)
21 COG0771 MurD UDP-N-acetylmuram 100.0 0 0 372.0 22.2 330 100-465 102-447 (448)
22 PRK04663 murD UDP-N-acetylmura 100.0 0 0 372.5 20.5 319 106-464 106-437 (438)
23 PRK03369 murD UDP-N-acetylmura 100.0 0 0 372.0 19.4 323 107-466 116-487 (487)
24 PRK00141 murD UDP-N-acetylmura 100.0 0 0 369.8 21.0 326 107-467 122-471 (476)
25 PRK04690 murD UDP-N-acetylmura 100.0 0 0 369.2 20.1 325 106-467 113-458 (468)
26 TIGR01087 murD UDP-N-acetylmur 100.0 0 0 368.3 17.4 326 107-462 109-475 (476)
27 TIGR01082 murC UDP-N-acetylmur 100.0 0 0 347.2 20.4 412 7-452 15-480 (491)
28 COG0773 MurC UDP-N-acetylmuram 100.0 0 0 335.8 23.1 354 80-468 88-457 (459)
29 PRK00683 murD UDP-N-acetylmura 100.0 0 0 338.2 18.8 301 106-465 100-415 (418)
30 PRK03815 murD UDP-N-acetylmura 100.0 7E-45 0 316.2 18.8 311 95-464 78-401 (401)
31 TIGR02068 cya_phycin_syn cyano 100.0 2E-44 0 313.3 13.1 436 6-466 334-872 (876)
32 pfam08245 Mur_ligase_M Mur lig 100.0 2.3E-42 0 299.5 2.8 186 113-303 1-188 (188)
33 TIGR01081 mpl UDP-N-acetylmura 100.0 1.4E-37 3.7E-42 267.8 13.6 397 8-468 38-458 (459)
34 COG0285 FolC Folylpolyglutamat 100.0 4.1E-35 1E-39 251.6 17.7 331 104-467 40-424 (427)
35 PRK10846 bifunctional folylpol 100.0 3.5E-35 9E-40 252.0 14.8 323 90-453 34-404 (416)
36 TIGR01499 folC FolC bifunction 100.0 1.2E-33 3.1E-38 241.8 15.9 350 91-466 4-458 (460)
37 KOG2525 consensus 99.9 1.8E-21 4.6E-26 161.3 17.2 323 90-452 55-481 (496)
38 pfam01225 Mur_ligase Mur ligas 99.7 5.9E-17 1.5E-21 131.4 9.4 76 26-103 1-76 (76)
39 pfam02875 Mur_ligase_C Mur lig 99.0 1.2E-09 3E-14 83.2 7.0 78 323-411 1-78 (87)
40 PRK00892 lpxD UDP-3-O-[3-hydro 98.1 2.6E-05 6.5E-10 54.4 9.5 95 3-106 1-95 (343)
41 COG1044 LpxD UDP-3-O-[3-hydrox 97.0 0.004 1E-07 39.9 7.1 96 3-107 2-97 (338)
42 TIGR01853 lipid_A_lpxD UDP-3-O 96.0 0.036 9.3E-07 33.5 7.2 93 9-108 1-94 (336)
43 PRK05439 pantothenate kinase; 95.3 0.017 4.2E-07 35.8 3.1 27 108-134 86-114 (312)
44 pfam04613 LpxD UDP-3-O-[3-hydr 95.1 0.11 2.8E-06 30.4 6.7 70 24-101 2-71 (72)
45 pfam07085 DRTGG DRTGG domain. 94.3 0.34 8.7E-06 27.1 7.9 87 9-99 1-103 (105)
46 PRK00409 recombination and DNA 93.1 0.53 1.4E-05 25.9 7.1 45 271-321 466-510 (780)
47 TIGR00313 cobQ cobyric acid sy 92.8 0.049 1.2E-06 32.7 1.4 41 153-194 116-165 (502)
48 TIGR01069 mutS2 MutS2 family p 92.3 0.86 2.2E-05 24.5 7.2 42 429-472 765-814 (834)
49 TIGR00670 asp_carb_tr aspartat 92.0 0.93 2.4E-05 24.2 7.5 114 341-471 137-269 (336)
50 TIGR03453 partition_RepA plasm 91.6 0.12 3.1E-06 30.1 2.2 29 107-135 103-134 (387)
51 TIGR02764 spore_ybaN_pdaB poly 91.4 0.19 4.9E-06 28.8 3.0 155 284-467 24-187 (198)
52 TIGR01278 DPOR_BchB light-inde 91.3 1.1 2.8E-05 23.8 7.8 79 367-461 307-392 (562)
53 TIGR00631 uvrb excinuclease AB 91.2 0.24 6E-06 28.2 3.4 110 93-217 16-162 (667)
54 PRK13869 plasmid-partitioning 91.1 0.15 3.8E-06 29.5 2.3 29 107-135 120-151 (405)
55 COG4109 Predicted transcriptio 91.0 0.43 1.1E-05 26.4 4.5 95 5-104 71-180 (432)
56 TIGR02782 TrbB_P P-type conjug 91.0 0.15 3.9E-06 29.5 2.2 71 37-123 76-156 (315)
57 TIGR01968 minD_bact septum sit 90.4 0.21 5.4E-06 28.5 2.5 30 109-138 2-34 (272)
58 COG1419 FlhF Flagellar GTP-bin 90.3 0.98 2.5E-05 24.1 5.8 17 29-45 26-42 (407)
59 COG1072 CoaA Panthothenate kin 90.2 0.15 3.8E-06 29.5 1.6 75 61-135 17-111 (283)
60 PRK09841 cryptic autophosphory 90.0 0.34 8.7E-06 27.1 3.3 97 366-469 528-642 (726)
61 COG1703 ArgK Putative periplas 89.4 0.51 1.3E-05 26.0 3.8 36 102-137 45-82 (323)
62 COG4555 NatA ABC-type Na+ tran 89.1 0.71 1.8E-05 25.0 4.4 79 107-209 27-108 (245)
63 COG0595 mRNA degradation ribon 88.9 1.7 4.4E-05 22.5 8.2 12 41-52 32-43 (555)
64 PRK06761 hypothetical protein; 88.9 0.16 4.1E-06 29.3 0.9 33 112-145 9-43 (281)
65 COG1936 Predicted nucleotide k 88.8 0.22 5.5E-06 28.4 1.6 21 109-130 1-23 (180)
66 cd02040 NifH NifH gene encodes 88.8 0.31 8E-06 27.4 2.4 30 108-137 1-32 (270)
67 PRK06731 flhF flagellar biosyn 88.6 0.21 5.3E-06 28.5 1.4 29 107-135 74-104 (270)
68 PRK03839 putative kinase; Prov 88.4 0.27 7E-06 27.7 1.9 21 110-130 2-24 (180)
69 cd02029 PRK_like Phosphoribulo 88.0 0.25 6.3E-06 28.0 1.5 26 110-135 1-28 (277)
70 cd02026 PRK Phosphoribulokinas 88.0 0.21 5.4E-06 28.5 1.1 25 110-134 1-27 (273)
71 PRK09435 arginine/ornithine tr 87.7 0.89 2.3E-05 24.4 4.1 40 98-137 39-80 (325)
72 TIGR01313 therm_gnt_kin carboh 87.7 0.28 7E-06 27.7 1.5 25 110-135 3-27 (175)
73 PRK11519 tyrosine kinase; Prov 87.0 1.3 3.2E-05 23.3 4.6 99 366-470 523-638 (720)
74 COG4240 Predicted kinase [Gene 87.0 1.1 2.7E-05 23.9 4.2 49 87-135 29-79 (300)
75 pfam06564 YhjQ YhjQ protein. T 86.6 0.44 1.1E-05 26.4 2.0 29 108-136 1-32 (244)
76 cd02025 PanK Pantothenate kina 86.5 0.33 8.4E-06 27.2 1.3 24 110-133 1-26 (220)
77 pfam06555 consensus 86.1 2.3 5.9E-05 21.6 5.5 34 81-117 10-43 (200)
78 COG2403 Predicted GTPase [Gene 85.9 0.65 1.7E-05 25.3 2.6 32 106-137 124-159 (449)
79 PRK10037 cell division protein 85.7 0.53 1.4E-05 25.8 2.1 43 110-152 6-53 (250)
80 PRK00313 lpxK tetraacyldisacch 85.5 0.75 1.9E-05 24.8 2.8 31 105-135 48-82 (332)
81 TIGR00750 lao LAO/AO transport 85.2 0.72 1.8E-05 25.0 2.6 31 107-137 37-69 (333)
82 PRK09825 idnK D-gluconate kina 85.2 0.39 1E-05 26.7 1.2 24 109-133 7-30 (176)
83 COG1763 MobB Molybdopterin-gua 85.0 0.64 1.6E-05 25.3 2.2 34 108-141 2-37 (161)
84 PRK05480 uridine kinase; Provi 84.9 0.52 1.3E-05 25.9 1.7 26 107-132 5-32 (209)
85 pfam02606 LpxK Tetraacyldisacc 84.7 0.86 2.2E-05 24.5 2.8 31 105-135 32-66 (318)
86 COG0237 CoaE Dephospho-CoA kin 83.9 0.61 1.5E-05 25.5 1.7 21 108-128 2-24 (201)
87 pfam01121 CoaE Dephospho-CoA k 83.9 0.53 1.4E-05 25.8 1.4 19 110-128 2-22 (179)
88 PRK08853 DNA polymerase III su 83.8 0.36 9.2E-06 27.0 0.5 35 28-62 73-109 (717)
89 cd02028 UMPK_like Uridine mono 83.6 0.57 1.5E-05 25.6 1.5 25 110-134 1-27 (179)
90 PRK05259 consensus 83.1 3.4 8.6E-05 20.5 8.2 92 338-444 211-302 (310)
91 PRK00652 lpxK tetraacyldisacch 83.1 1 2.5E-05 24.0 2.6 31 105-135 46-80 (334)
92 cd02023 UMPK Uridine monophosp 83.0 0.48 1.2E-05 26.1 0.9 23 110-132 1-25 (198)
93 PRK13764 ATPase; Provisional 82.9 1.1 2.7E-05 23.8 2.7 76 107-193 258-336 (605)
94 PRK01906 tetraacyldisaccharide 82.7 1.2 3E-05 23.6 2.8 31 105-135 53-87 (339)
95 pfam03308 ArgK ArgK protein. T 82.7 2.3 5.9E-05 21.6 4.3 31 107-137 28-60 (267)
96 pfam00142 Fer4_NifH 4Fe-4S iro 82.7 0.91 2.3E-05 24.3 2.2 29 109-137 1-31 (269)
97 COG3954 PrkB Phosphoribulokina 82.6 1.1 2.9E-05 23.7 2.7 28 106-133 3-32 (289)
98 pfam00485 PRK Phosphoribulokin 82.4 0.58 1.5E-05 25.6 1.1 25 110-134 1-27 (196)
99 PRK07003 DNA polymerase III su 82.1 0.4 1E-05 26.7 0.2 53 8-63 56-110 (816)
100 PRK10818 cell division inhibit 82.0 1 2.6E-05 24.0 2.3 29 108-136 2-33 (270)
101 TIGR03172 probable selenium-de 81.7 0.79 2E-05 24.7 1.6 26 110-135 1-26 (232)
102 COG2894 MinD Septum formation 81.5 1.2 3.2E-05 23.4 2.6 31 108-138 2-35 (272)
103 COG3367 Uncharacterized conser 81.1 1 2.5E-05 24.0 2.0 100 41-140 70-183 (339)
104 PRK07429 phosphoribulokinase; 81.1 0.92 2.3E-05 24.3 1.8 28 107-134 7-36 (331)
105 PRK11545 gntK gluconate kinase 81.0 0.64 1.6E-05 25.3 1.0 28 107-134 7-36 (177)
106 TIGR01420 pilT_fam twitching m 81.0 4 0.0001 20.0 6.0 67 41-122 73-143 (350)
107 TIGR01188 drrA daunorubicin re 80.8 0.75 1.9E-05 24.9 1.2 29 106-134 19-49 (343)
108 PRK00081 coaE dephospho-CoA ki 80.7 0.91 2.3E-05 24.3 1.6 21 108-128 2-24 (199)
109 PRK09270 frcK putative fructos 80.5 2.6 6.5E-05 21.3 3.9 28 107-134 33-62 (230)
110 PRK06696 uridine kinase; Valid 80.4 3.1 7.9E-05 20.8 4.3 43 93-135 9-55 (227)
111 PRK05648 DNA polymerase III su 80.2 0.62 1.6E-05 25.4 0.6 12 458-469 676-687 (705)
112 CHL00175 minD septum-site dete 79.9 1.3 3.4E-05 23.2 2.3 30 108-137 13-45 (279)
113 PRK08770 DNA polymerase III su 79.7 0.74 1.9E-05 24.9 0.9 12 458-469 639-650 (663)
114 COG0769 MurE UDP-N-acetylmuram 79.7 0.11 2.9E-06 30.3 -3.2 95 105-202 61-161 (475)
115 cd03114 ArgK-like The function 79.4 0.96 2.4E-05 24.2 1.4 27 110-136 1-29 (148)
116 TIGR03450 mycothiol_INO1 inosi 78.6 4.8 0.00012 19.5 5.5 11 28-38 51-61 (351)
117 PRK12323 DNA polymerase III su 78.5 0.67 1.7E-05 25.2 0.4 36 28-63 78-115 (721)
118 pfam07755 DUF1611 Protein of u 78.4 1.2 2.9E-05 23.6 1.6 98 38-136 33-144 (302)
119 PTZ00145 phosphoribosylpyropho 78.4 4.8 0.00012 19.5 6.9 73 324-408 325-399 (443)
120 PRK10751 molybdopterin-guanine 78.0 1.6 4E-05 22.8 2.1 34 108-141 2-37 (170)
121 PRK10799 putative hydrolase-ox 77.9 4.7 0.00012 19.6 4.6 64 6-74 2-66 (247)
122 cd02036 MinD Bacterial cell di 77.8 1.2 3.1E-05 23.5 1.6 27 110-136 1-30 (179)
123 PRK06872 DNA polymerase III su 77.8 0.99 2.5E-05 24.1 1.1 36 28-63 73-110 (696)
124 PRK11670 putative ATPase; Prov 77.6 1.6 4.2E-05 22.6 2.2 29 109-137 108-139 (369)
125 TIGR02087 LEUD_arch 3-isopropy 77.2 4.7 0.00012 19.6 4.4 53 7-72 27-83 (159)
126 TIGR03371 cellulose_yhjQ cellu 76.9 1.7 4.3E-05 22.6 2.1 29 108-136 1-32 (246)
127 cd02022 DPCK Dephospho-coenzym 76.7 0.99 2.5E-05 24.0 0.9 18 110-127 1-20 (179)
128 TIGR00713 hemL glutamate-1-sem 76.7 5.4 0.00014 19.2 6.6 312 57-468 73-431 (434)
129 TIGR02853 spore_dpaA dipicolin 76.7 1.2 3E-05 23.6 1.2 63 159-227 55-131 (288)
130 PRK13705 plasmid-partitioning 76.4 1.8 4.7E-05 22.3 2.1 29 107-135 105-136 (388)
131 TIGR03018 pepcterm_TyrKin exop 76.1 3.4 8.6E-05 20.6 3.4 30 106-135 33-66 (207)
132 TIGR02199 rfaE_dom_II rfaE bif 76.1 5.1 0.00013 19.3 4.4 24 398-421 74-98 (144)
133 TIGR02855 spore_yabG sporulati 75.9 0.84 2.1E-05 24.5 0.3 63 147-211 110-192 (292)
134 PRK01184 hypothetical protein; 75.7 1.7 4.2E-05 22.6 1.8 23 108-134 1-25 (183)
135 TIGR02407 ectoine_ectB diamino 75.7 1.1 2.9E-05 23.7 0.9 37 283-319 281-322 (413)
136 TIGR01846 type_I_sec_HlyB type 74.5 1.8 4.5E-05 22.4 1.6 36 414-449 612-656 (703)
137 TIGR01035 hemA glutamyl-tRNA r 73.5 6.5 0.00016 18.7 9.3 21 88-108 60-80 (436)
138 PTZ00301 uridine kinase; Provi 73.4 2.6 6.7E-05 21.2 2.3 24 107-130 2-27 (210)
139 COG5271 MDN1 AAA ATPase contai 73.2 1.9 4.9E-05 22.2 1.6 20 110-130 469-488 (4600)
140 TIGR00064 ftsY signal recognit 73.2 2.9 7.5E-05 20.9 2.5 31 106-136 80-112 (284)
141 PRK03333 coaE dephospho-CoA ki 73.2 1.8 4.6E-05 22.3 1.4 47 304-360 143-189 (394)
142 COG0572 Udk Uridine kinase [Nu 72.8 2 5.1E-05 22.0 1.6 26 108-133 8-35 (218)
143 PRK08233 hypothetical protein; 72.8 2.2 5.7E-05 21.7 1.8 24 107-130 2-27 (182)
144 PRK07994 DNA polymerase III su 72.7 1.4 3.5E-05 23.2 0.7 39 25-63 70-110 (643)
145 PRK05749 3-deoxy-D-manno-octul 72.6 6.8 0.00017 18.5 4.6 70 402-472 342-423 (423)
146 cd01983 Fer4_NifH The Fer4_Nif 72.6 2.1 5.4E-05 21.9 1.7 26 110-135 1-28 (99)
147 cd02117 NifH_like This family 72.3 2.8 7.2E-05 21.0 2.3 29 109-137 1-31 (212)
148 COG0552 FtsY Signal recognitio 72.1 3.3 8.4E-05 20.6 2.6 27 108-134 139-167 (340)
149 cd03116 MobB Molybdenum is an 71.8 2.7 6.9E-05 21.2 2.1 34 108-141 1-36 (159)
150 COG1855 ATPase (PilT family) [ 71.4 5.5 0.00014 19.1 3.6 71 109-190 264-337 (604)
151 PRK02458 ribose-phosphate pyro 71.3 7.3 0.00018 18.3 8.7 60 338-409 220-279 (323)
152 PRK13507 formate--tetrahydrofo 71.1 6.5 0.00017 18.7 3.9 33 103-135 58-96 (587)
153 cd02034 CooC The accessory pro 71.0 2.6 6.7E-05 21.2 1.9 25 111-135 2-28 (116)
154 TIGR01526 nadR_NMN_Atrans nico 70.6 2.8 7.2E-05 21.1 2.0 56 384-442 273-328 (346)
155 PRK04183 glutamyl-tRNA(Gln) am 70.5 5.2 0.00013 19.3 3.3 12 23-34 14-25 (421)
156 cd01882 BMS1 Bms1. Bms1 is an 70.2 4.8 0.00012 19.5 3.0 23 106-131 37-61 (225)
157 PRK07667 uridine kinase; Provi 69.8 3.1 7.9E-05 20.8 2.0 28 107-134 13-42 (190)
158 KOG0950 consensus 69.8 5.9 0.00015 18.9 3.4 82 35-122 519-601 (1008)
159 PHA02519 plasmid partition pro 69.8 3.3 8.4E-05 20.6 2.1 28 108-135 106-136 (387)
160 cd02024 NRK1 Nicotinamide ribo 69.7 2 5.1E-05 22.0 1.0 22 110-131 1-24 (187)
161 PRK03092 ribose-phosphate pyro 69.7 7.8 0.0002 18.1 9.8 91 338-444 203-293 (304)
162 TIGR02525 plasmid_TraJ plasmid 69.5 1.9 4.7E-05 22.3 0.8 53 78-137 124-177 (374)
163 PRK13230 nitrogenase reductase 69.1 2.2 5.5E-05 21.8 1.1 29 109-137 2-32 (292)
164 PRK10416 cell division protein 69.1 4 0.0001 20.0 2.5 24 330-353 342-365 (499)
165 PHA02518 ParA-like protein; Pr 68.9 3.1 8E-05 20.7 1.9 28 109-136 1-31 (211)
166 pfam03215 Rad17 Rad17 cell cyc 68.5 3.4 8.8E-05 20.5 2.0 44 87-133 27-72 (490)
167 TIGR00235 udk uridine kinase; 67.3 2.9 7.3E-05 21.0 1.4 25 108-132 10-40 (220)
168 COG1428 Deoxynucleoside kinase 67.2 3.4 8.7E-05 20.5 1.8 24 108-131 4-29 (216)
169 COG1663 LpxK Tetraacyldisaccha 66.7 9 0.00023 17.7 3.9 32 106-137 45-80 (336)
170 pfam01656 CbiA CobQ/CobB/MinD/ 66.4 2.4 6E-05 21.6 0.8 23 114-136 7-29 (212)
171 cd03109 DTBS Dethiobiotin synt 65.7 2.2 5.5E-05 21.8 0.5 39 114-166 6-45 (134)
172 COG0125 Tmk Thymidylate kinase 65.4 4.1 0.0001 20.0 1.9 33 107-139 2-37 (208)
173 cd02037 MRP-like MRP (Multiple 65.4 3.6 9.1E-05 20.4 1.6 28 110-137 1-31 (169)
174 KOG1970 consensus 64.6 6.1 0.00016 18.8 2.7 46 87-133 90-137 (634)
175 PRK04923 ribose-phosphate pyro 64.5 9.9 0.00025 17.4 8.8 92 338-444 219-310 (319)
176 cd02038 FleN-like FleN is a me 64.5 3.8 9.7E-05 20.2 1.6 51 110-169 1-54 (139)
177 COG0132 BioD Dethiobiotin synt 64.3 5 0.00013 19.4 2.2 29 108-136 2-33 (223)
178 PRK13185 chlL protochlorophyll 63.9 5.2 0.00013 19.3 2.2 31 108-138 2-34 (269)
179 TIGR02528 EutP ethanolamine ut 63.8 4.7 0.00012 19.6 2.0 85 111-195 3-103 (144)
180 PRK03946 pdxA 4-hydroxythreoni 63.6 7.2 0.00018 18.3 2.9 10 349-358 287-296 (304)
181 TIGR02397 dnaX_nterm DNA polym 63.4 2.5 6.5E-05 21.4 0.5 60 112-178 40-104 (363)
182 PRK13506 formate--tetrahydrofo 63.2 10 0.00027 17.3 3.7 32 104-135 50-87 (577)
183 TIGR00347 bioD dethiobiotin sy 63.1 3.4 8.8E-05 20.5 1.2 26 113-138 2-30 (187)
184 PRK08356 hypothetical protein; 63.0 4.3 0.00011 19.9 1.6 28 109-140 6-35 (195)
185 TIGR01186 proV glycine betaine 63.0 2.2 5.6E-05 21.8 0.2 31 107-137 18-51 (372)
186 PRK13233 nifH nitrogenase redu 63.0 5.9 0.00015 18.9 2.3 31 108-138 2-35 (275)
187 TIGR02884 spore_pdaA delta-lac 62.9 6.5 0.00017 18.6 2.6 73 382-467 139-214 (225)
188 KOG3347 consensus 62.8 4.7 0.00012 19.6 1.8 26 109-134 8-35 (176)
189 TIGR01969 minD_arch cell divis 62.7 3.2 8.1E-05 20.7 0.9 23 115-137 10-32 (258)
190 cd01130 VirB11-like_ATPase Typ 62.6 4.8 0.00012 19.5 1.8 29 96-127 16-46 (186)
191 cd02021 GntK Gluconate kinase 62.6 2.7 6.8E-05 21.2 0.5 22 110-132 4-25 (150)
192 PRK12374 putative dithiobiotin 62.5 4 0.0001 20.1 1.4 27 111-137 5-34 (231)
193 KOG2792 consensus 62.3 4.6 0.00012 19.7 1.7 11 113-123 39-49 (280)
194 COG0455 flhG Antiactivator of 62.2 6.2 0.00016 18.8 2.3 29 108-136 2-34 (262)
195 pfam09140 MipZ ATPase MipZ. Mi 62.1 3.5 8.9E-05 20.4 1.0 28 110-137 2-32 (261)
196 cd00477 FTHFS Formyltetrahydro 62.0 11 0.00028 17.1 3.6 33 103-135 33-71 (524)
197 PRK08691 DNA polymerase III su 61.8 3.2 8.1E-05 20.7 0.8 53 8-63 56-110 (704)
198 PRK04507 consensus 61.2 10 0.00026 17.3 3.3 16 348-363 304-319 (323)
199 pfam08353 DUF1727 Domain of un 61.0 11 0.00029 17.0 5.8 96 349-449 4-103 (110)
200 COG3640 CooC CO dehydrogenase 60.7 5.7 0.00015 19.0 1.9 24 110-133 2-28 (255)
201 TIGR00986 3a0801s05tom22 mitoc 60.3 2.1 5.4E-05 21.9 -0.3 50 116-166 78-127 (152)
202 PRK00090 bioD dithiobiotin syn 60.2 5.1 0.00013 19.3 1.6 27 111-137 2-31 (223)
203 cd02042 ParA ParA and ParB of 60.1 4.1 0.0001 20.0 1.1 73 112-201 6-78 (104)
204 pfam03205 MobB Molybdopterin g 59.8 6.6 0.00017 18.6 2.1 27 109-135 1-29 (122)
205 COG1192 Soj ATPases involved i 59.5 5 0.00013 19.4 1.4 28 110-137 7-36 (259)
206 PRK13232 nifH nitrogenase redu 59.4 4.3 0.00011 19.8 1.1 29 109-137 2-32 (273)
207 cd03231 ABC_CcmA_heme_exporter 58.9 4.6 0.00012 19.6 1.2 27 106-132 24-52 (201)
208 cd02032 Bchl_like This family 58.8 4.3 0.00011 19.8 1.1 29 110-138 2-32 (267)
209 COG0540 PyrB Aspartate carbamo 58.7 12 0.00032 16.8 7.0 79 347-433 136-221 (316)
210 PRK13235 nifH nitrogenase redu 58.3 4.5 0.00011 19.7 1.1 30 109-138 2-33 (274)
211 TIGR02124 hypE hydrogenase exp 58.3 11 0.00028 17.2 3.0 51 299-377 261-312 (345)
212 TIGR03180 UraD_2 OHCU decarbox 58.0 12 0.0003 16.9 3.2 14 306-319 47-60 (158)
213 cd03289 ABCC_CFTR2 The CFTR su 58.0 5.7 0.00015 19.0 1.6 31 106-136 28-60 (275)
214 cd03280 ABC_MutS2 MutS2 homolo 58.0 9 0.00023 17.7 2.6 28 107-134 27-58 (200)
215 cd02035 ArsA ArsA ATPase funct 57.6 4.5 0.00012 19.7 1.0 23 114-136 7-29 (217)
216 pfam00448 SRP54 SRP54-type pro 57.5 8.4 0.00021 17.9 2.3 28 108-135 1-30 (196)
217 PRK00698 tmk thymidylate kinas 57.4 8.6 0.00022 17.9 2.4 29 107-135 2-32 (204)
218 cd00550 ArsA_ATPase Oxyanion-t 57.3 4.7 0.00012 19.6 1.1 27 110-136 2-30 (254)
219 PRK03367 consensus 57.1 13 0.00034 16.6 4.2 17 348-364 309-325 (329)
220 PRK01259 ribose-phosphate pyro 57.1 13 0.00034 16.6 9.3 60 338-409 210-269 (309)
221 COG3044 Predicted ATPase of th 56.8 8.6 0.00022 17.8 2.3 44 4-56 1-44 (554)
222 PRK13505 formate--tetrahydrofo 56.8 11 0.00028 17.2 2.8 33 103-135 49-87 (556)
223 PRK10437 carbonic anhydrase; P 56.7 10 0.00026 17.3 2.7 24 21-45 33-63 (220)
224 COG0001 HemL Glutamate-1-semia 56.6 10 0.00026 17.3 2.7 75 323-406 279-353 (432)
225 TIGR00382 clpX ATP-dependent C 56.4 3.8 9.8E-05 20.2 0.5 37 94-131 141-177 (452)
226 PRK03695 vitamin B12-transport 56.3 5.3 0.00013 19.2 1.1 30 107-136 22-53 (245)
227 pfam04166 PdxA Pyridoxal phosp 56.1 14 0.00035 16.5 3.8 11 348-358 286-296 (299)
228 pfam09818 ABC_ATPase Predicted 56.0 14 0.00035 16.5 3.6 20 390-411 330-349 (447)
229 TIGR03029 EpsG chain length de 55.9 14 0.00035 16.5 4.2 102 31-135 9-133 (274)
230 cd02033 BchX Chlorophyllide re 55.8 8.7 0.00022 17.8 2.2 32 107-138 30-63 (329)
231 pfam01268 FTHFS Formate--tetra 55.2 11 0.00029 17.1 2.7 32 104-135 50-87 (555)
232 PRK13540 cytochrome c biogenes 55.2 6.1 0.00015 18.9 1.3 27 106-132 25-53 (200)
233 TIGR02188 Ac_CoA_lig_AcsA acet 55.0 14 0.00036 16.4 6.0 82 36-118 286-379 (643)
234 COG3172 NadR Predicted ATPase/ 55.0 7.1 0.00018 18.4 1.6 25 108-132 8-34 (187)
235 PRK08674 bifunctional phosphog 54.9 14 0.00037 16.4 5.9 84 33-119 27-116 (328)
236 PRK08099 nicotinamide-nucleoti 54.4 14 0.00035 16.5 3.1 74 391-467 329-408 (411)
237 PRK11860 bifunctional 3-phosph 54.2 15 0.00038 16.3 3.4 37 7-44 56-92 (662)
238 pfam09905 DUF2132 Uncharacteri 54.0 5 0.00013 19.4 0.7 47 306-364 7-53 (64)
239 cd03278 ABC_SMC_barmotin Barmo 53.9 9.4 0.00024 17.6 2.1 25 106-131 21-47 (197)
240 TIGR00503 prfC peptide chain r 53.6 10 0.00027 17.3 2.3 39 429-469 419-459 (530)
241 PRK00411 cdc6 cell division co 53.5 14 0.00037 16.4 3.0 41 93-134 37-83 (394)
242 TIGR02881 spore_V_K stage V sp 53.5 5.6 0.00014 19.1 0.9 18 117-134 53-70 (261)
243 PRK13541 cytochrome c biogenes 53.3 6.3 0.00016 18.7 1.2 31 106-136 24-57 (195)
244 PRK07078 hypothetical protein; 53.2 6.4 0.00016 18.7 1.1 20 114-133 250-269 (510)
245 cd03110 Fer4_NifH_child This p 52.7 6.6 0.00017 18.6 1.2 21 111-131 2-25 (179)
246 KOG2182 consensus 52.4 16 0.0004 16.1 7.3 99 32-135 77-194 (514)
247 TIGR03499 FlhF flagellar biosy 52.4 12 0.00032 16.8 2.5 28 421-449 251-278 (282)
248 PRK13236 nitrogenase reductase 52.3 11 0.00027 17.3 2.2 32 107-138 5-38 (295)
249 PRK09111 DNA polymerase III su 52.1 6.2 0.00016 18.8 0.9 22 111-132 48-71 (600)
250 COG1219 ClpX ATP-dependent pro 51.4 3.7 9.4E-05 20.3 -0.3 98 105-216 97-202 (408)
251 TIGR01281 DPOR_bchL light-inde 51.3 7.6 0.00019 18.2 1.3 29 110-138 2-32 (275)
252 cd05008 SIS_GlmS_GlmD_1 SIS (S 50.9 17 0.00042 16.0 4.0 37 33-69 40-78 (126)
253 COG0556 UvrB Helicase subunit 50.6 17 0.00043 15.9 3.0 13 109-122 36-48 (663)
254 cd03215 ABC_Carb_Monos_II This 50.4 8.3 0.00021 18.0 1.4 27 106-132 24-52 (182)
255 PRK04117 consensus 50.1 17 0.00043 15.9 8.9 90 338-445 213-302 (309)
256 PRK00023 cmk cytidylate kinase 50.1 10 0.00026 17.3 1.8 28 107-134 3-32 (225)
257 COG0462 PrsA Phosphoribosylpyr 50.1 17 0.00044 15.9 9.1 61 337-409 215-275 (314)
258 PRK13896 cobyrinic acid a,c-di 50.0 12 0.0003 16.9 2.1 28 110-137 5-33 (432)
259 PRK01999 consensus 49.7 17 0.00044 15.8 8.7 89 338-444 214-302 (311)
260 COG0489 Mrp ATPases involved i 49.5 13 0.00034 16.6 2.3 30 107-136 56-88 (265)
261 TIGR02253 CTE7 HAD superfamily 49.4 17 0.00044 15.8 5.1 74 357-449 119-192 (244)
262 TIGR02173 cyt_kin_arch cytidyl 49.4 9.5 0.00024 17.6 1.6 24 110-133 2-27 (173)
263 TIGR03238 dnd_assoc_3 dnd syst 49.4 17 0.00045 15.8 4.0 28 91-118 76-104 (504)
264 TIGR02640 gas_vesic_GvpN gas v 49.1 8.8 0.00022 17.8 1.3 51 89-142 5-55 (265)
265 pfam02374 ArsA_ATPase Anion-tr 49.1 14 0.00034 16.5 2.3 27 109-135 2-30 (304)
266 TIGR00176 mobB molybdopterin-g 49.1 8.6 0.00022 17.9 1.3 32 110-141 1-34 (165)
267 PRK01077 cobyrinic acid a,c-di 49.0 16 0.0004 16.1 2.6 30 108-137 3-35 (451)
268 cd03115 SRP The signal recogni 49.0 14 0.00035 16.5 2.3 26 110-135 2-29 (173)
269 cd00884 beta_CA_cladeB Carboni 49.0 18 0.00045 15.8 2.9 25 20-45 23-54 (190)
270 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 48.9 8.5 0.00022 17.9 1.2 27 106-132 46-74 (224)
271 TIGR01978 sufC FeS assembly AT 48.9 18 0.00045 15.8 3.2 33 106-142 24-58 (248)
272 PRK05298 excinuclease ABC subu 48.5 17 0.00044 15.8 2.8 33 90-123 17-50 (657)
273 cd03226 ABC_cobalt_CbiO_domain 48.1 8.9 0.00023 17.7 1.2 27 106-132 24-52 (205)
274 PRK04607 consensus 48.0 18 0.00047 15.7 2.9 17 347-363 310-326 (330)
275 CHL00072 chlL photochlorophyll 48.0 8.2 0.00021 18.0 1.0 28 111-138 3-32 (271)
276 cd03225 ABC_cobalt_CbiO_domain 47.9 9.2 0.00023 17.7 1.3 26 106-131 25-52 (211)
277 cd03237 ABC_RNaseL_inhibitor_d 47.9 8.8 0.00022 17.8 1.2 26 107-132 24-51 (246)
278 COG1880 CdhB CO dehydrogenase/ 47.7 19 0.00047 15.6 8.4 16 183-198 108-123 (170)
279 PRK13477 bifunctional pantoate 47.7 12 0.00031 16.9 1.9 26 442-468 476-501 (512)
280 PRK04554 consensus 47.6 19 0.00047 15.6 9.2 92 338-444 217-308 (327)
281 KOG3022 consensus 47.5 8.8 0.00022 17.8 1.1 27 109-135 48-77 (300)
282 PRK10584 putative ABC transpor 47.5 8.9 0.00023 17.8 1.1 27 106-132 34-62 (228)
283 PRK02812 ribose-phosphate pyro 47.4 19 0.00048 15.6 10.5 61 337-409 231-292 (331)
284 PRK13650 cbiO cobalt transport 47.1 9.4 0.00024 17.6 1.2 27 106-132 28-56 (276)
285 PRK05632 phosphate acetyltrans 46.9 19 0.00049 15.6 10.1 95 6-101 219-334 (702)
286 COG1245 Predicted ATPase, RNas 46.8 2.5 6.3E-05 21.4 -1.8 86 38-131 30-125 (591)
287 PRK06942 glutamate-1-semialdeh 46.7 9.1 0.00023 17.7 1.1 51 344-403 296-346 (425)
288 cd00267 ABC_ATPase ABC (ATP-bi 46.5 11 0.00027 17.3 1.4 26 106-131 23-50 (157)
289 COG4152 ABC-type uncharacteriz 46.0 11 0.00029 17.0 1.5 32 106-137 26-60 (300)
290 PRK00615 glutamate-1-semialdeh 45.8 9.6 0.00024 17.5 1.1 53 341-402 297-349 (433)
291 PRK11247 ssuB aliphatic sulfon 45.7 10 0.00026 17.4 1.2 27 106-132 36-64 (257)
292 pfam01935 DUF87 Domain of unkn 45.6 9.7 0.00025 17.5 1.1 24 107-131 25-49 (218)
293 PRK13544 consensus 45.6 11 0.00027 17.3 1.3 27 106-132 25-53 (208)
294 TIGR02873 spore_ylxY probable 45.5 20 0.00051 15.4 4.2 40 428-467 216-257 (269)
295 cd03227 ABC_Class2 ABC-type Cl 45.5 16 0.00041 16.0 2.2 21 107-127 20-42 (162)
296 PRK13538 cytochrome c biogenes 45.4 10 0.00026 17.4 1.2 26 106-131 25-52 (204)
297 TIGR02475 CobW cobalamin biosy 45.2 12 0.0003 16.9 1.5 31 106-139 2-35 (349)
298 cd02019 NK Nucleoside/nucleoti 45.2 12 0.0003 16.9 1.5 21 110-130 1-23 (69)
299 PRK10824 hypothetical protein; 45.1 19 0.00048 15.6 2.5 14 311-324 56-69 (115)
300 cd03246 ABCC_Protease_Secretio 45.1 11 0.00028 17.2 1.3 26 106-131 26-53 (173)
301 PRK13234 nifH nitrogenase redu 45.0 16 0.00041 16.1 2.1 32 107-138 3-36 (293)
302 cd03269 ABC_putative_ATPase Th 45.0 12 0.0003 16.9 1.5 27 106-132 24-52 (210)
303 cd03247 ABCC_cytochrome_bd The 45.0 12 0.00032 16.8 1.6 26 106-131 26-53 (178)
304 cd03236 ABC_RNaseL_inhibitor_d 44.8 10 0.00026 17.3 1.1 26 107-132 25-52 (255)
305 PRK13546 teichoic acids export 44.7 11 0.00028 17.2 1.2 27 106-132 48-76 (264)
306 PRK13647 cbiO cobalt transport 44.6 11 0.00028 17.1 1.3 26 106-131 29-56 (273)
307 cd00883 beta_CA_cladeA Carboni 44.6 21 0.00053 15.3 4.7 26 20-46 22-54 (182)
308 PRK00232 pdxA 4-hydroxythreoni 44.6 21 0.00053 15.3 3.7 17 348-364 313-329 (334)
309 KOG3220 consensus 44.5 14 0.00036 16.4 1.8 22 109-134 2-25 (225)
310 PRK13652 cbiO cobalt transport 44.5 11 0.00028 17.1 1.2 27 106-132 28-56 (277)
311 TIGR01007 eps_fam capsular exo 44.2 16 0.0004 16.1 2.0 29 107-135 18-49 (207)
312 cd03248 ABCC_TAP TAP, the Tran 43.9 12 0.00031 16.9 1.4 26 106-131 38-65 (226)
313 KOG3354 consensus 43.8 11 0.00028 17.1 1.2 24 110-134 17-40 (191)
314 cd03222 ABC_RNaseL_inhibitor T 43.8 11 0.00029 17.1 1.2 27 106-132 23-51 (177)
315 KOG1324 consensus 43.7 21 0.00054 15.2 4.4 76 318-407 61-137 (190)
316 PRK13644 cbiO cobalt transport 43.7 12 0.00031 16.9 1.4 27 106-132 26-54 (274)
317 cd01672 TMPK Thymidine monopho 43.6 17 0.00043 15.9 2.1 26 110-135 2-29 (200)
318 PRK11831 putative ABC transpor 43.5 11 0.00029 17.1 1.2 27 106-132 32-60 (269)
319 COG1618 Predicted nucleotide k 43.4 16 0.0004 16.1 1.9 26 109-134 6-33 (179)
320 cd03240 ABC_Rad50 The catalyti 43.2 13 0.00034 16.6 1.5 22 106-127 20-43 (204)
321 PRK00553 ribose-phosphate pyro 43.1 22 0.00055 15.2 10.8 111 338-466 228-338 (340)
322 pfam07693 KAP_NTPase KAP famil 43.1 22 0.00056 15.2 3.6 38 96-133 6-47 (301)
323 PRK13637 cbiO cobalt transport 43.0 12 0.0003 16.9 1.2 27 106-132 31-59 (287)
324 PRK13632 cbiO cobalt transport 42.9 13 0.00032 16.8 1.3 27 106-132 34-62 (273)
325 cd03257 ABC_NikE_OppD_transpor 42.9 12 0.00031 16.9 1.2 26 106-131 29-56 (228)
326 cd04261 AAK_AKii-LysC-BS AAK_A 42.8 18 0.00045 15.8 2.1 16 107-122 31-46 (239)
327 pfam07015 VirC1 VirC1 protein. 42.7 11 0.00028 17.1 1.0 29 109-137 2-33 (231)
328 cd03216 ABC_Carb_Monos_I This 42.6 12 0.00031 16.9 1.2 26 106-131 24-51 (163)
329 PRK02270 consensus 42.5 22 0.00057 15.1 10.6 92 338-444 216-307 (327)
330 cd03228 ABCC_MRP_Like The MRP 42.4 13 0.00032 16.7 1.3 26 106-131 26-53 (171)
331 PRK06131 dihydroxy-acid dehydr 42.4 22 0.00057 15.1 3.3 147 296-456 279-449 (577)
332 PRK13651 cobalt transporter AT 42.3 13 0.00032 16.7 1.3 27 106-132 31-59 (304)
333 TIGR01521 FruBisAldo_II_B fruc 42.2 22 0.00057 15.1 4.5 17 303-319 251-267 (347)
334 PRK13633 cobalt transporter AT 41.9 13 0.00034 16.6 1.4 27 106-132 35-63 (281)
335 PRK09580 sufC cysteine desulfu 41.9 16 0.00042 16.0 1.8 37 337-375 164-201 (248)
336 PRK13639 cbiO cobalt transport 41.9 13 0.00032 16.8 1.2 31 106-136 26-59 (275)
337 PRK13543 cytochrome c biogenes 41.7 13 0.00032 16.7 1.2 26 107-132 36-63 (214)
338 TIGR03164 UHCUDC OHCU decarbox 41.7 23 0.00058 15.0 2.8 15 306-320 45-59 (157)
339 cd03219 ABC_Mj1267_LivG_branch 41.6 13 0.00033 16.6 1.3 27 106-132 24-52 (236)
340 PRK13409 putative ATPase RIL; 41.4 12 0.00031 16.8 1.1 26 107-132 98-125 (590)
341 cd02020 CMPK Cytidine monophos 41.4 12 0.00031 16.8 1.1 25 110-134 1-27 (147)
342 COG0373 HemA Glutamyl-tRNA red 41.3 23 0.00059 15.0 8.5 15 222-236 205-219 (414)
343 PRK13974 thymidylate kinase; P 41.2 21 0.00054 15.2 2.3 28 107-134 2-31 (212)
344 CHL00181 cbbX CbbX; Provisiona 41.2 23 0.00059 15.0 3.2 24 111-134 62-87 (287)
345 PRK13537 lipooligosaccharide t 41.0 13 0.00032 16.7 1.1 28 106-133 29-58 (304)
346 pfam00488 MutS_V MutS domain V 40.9 23 0.00058 15.0 2.4 28 107-134 41-72 (234)
347 PRK13631 cbiO cobalt transport 40.8 13 0.00034 16.6 1.2 28 106-133 50-79 (320)
348 KOG3308 consensus 40.8 15 0.00038 16.2 1.5 25 108-132 4-30 (225)
349 COG1131 CcmA ABC-type multidru 40.8 12 0.00032 16.8 1.0 26 107-132 30-57 (293)
350 PRK13646 cbiO cobalt transport 40.8 14 0.00036 16.4 1.3 27 106-132 31-59 (286)
351 PRK13640 cbiO cobalt transport 40.6 17 0.00042 16.0 1.7 27 106-132 32-60 (283)
352 COG4586 ABC-type uncharacteriz 40.2 17 0.00043 15.9 1.7 30 106-135 48-80 (325)
353 PRK13645 cbiO cobalt transport 40.0 15 0.00038 16.3 1.4 27 106-132 35-63 (289)
354 TIGR02533 type_II_gspE general 39.9 24 0.00062 14.9 3.6 20 110-132 247-268 (495)
355 PRK10771 thiQ thiamine transpo 39.9 14 0.00035 16.5 1.2 27 106-132 23-51 (233)
356 TIGR01405 polC_Gram_pos DNA po 39.9 14 0.00036 16.4 1.2 73 164-240 223-309 (1264)
357 COG1193 Mismatch repair ATPase 39.8 21 0.00054 15.3 2.1 37 278-320 463-499 (753)
358 PRK13542 consensus 39.6 14 0.00036 16.5 1.2 27 106-132 42-70 (224)
359 TIGR01124 ilvA_2Cterm threonin 39.5 25 0.00063 14.8 3.1 34 35-70 63-96 (508)
360 pfam02223 Thymidylate_kin Thym 39.4 11 0.00028 17.2 0.6 19 117-135 7-25 (186)
361 PRK04040 adenylate kinase; Pro 39.3 19 0.00048 15.6 1.8 30 108-137 2-33 (189)
362 COG2019 AdkA Archaeal adenylat 39.3 22 0.00057 15.1 2.2 23 108-130 4-28 (189)
363 PRK11629 lolD lipoprotein tran 39.2 14 0.00035 16.5 1.1 27 106-132 33-61 (233)
364 PRK10436 hypothetical protein; 39.1 25 0.00064 14.8 3.6 29 292-320 317-345 (461)
365 cd03235 ABC_Metallic_Cations A 38.9 15 0.00038 16.3 1.2 53 337-407 151-205 (213)
366 COG1797 CobB Cobyrinic acid a, 38.9 19 0.00048 15.6 1.7 26 110-135 4-30 (451)
367 COG2759 MIS1 Formyltetrahydrof 38.9 25 0.00064 14.8 3.0 31 105-135 49-85 (554)
368 pfam05577 Peptidase_S28 Serine 38.8 25 0.00064 14.8 10.4 105 25-135 13-135 (433)
369 PRK13849 putative crown gall t 38.8 14 0.00036 16.5 1.0 29 109-137 2-33 (231)
370 PRK13539 cytochrome c biogenes 38.7 15 0.00037 16.3 1.1 26 106-131 26-53 (206)
371 cd03250 ABCC_MRP_domain1 Domai 38.5 15 0.00038 16.3 1.2 25 106-130 29-55 (204)
372 PRK05563 DNA polymerase III su 38.5 11 0.00027 17.2 0.4 32 289-320 257-288 (541)
373 KOG4777 consensus 38.3 9.4 0.00024 17.6 0.1 56 107-168 6-71 (361)
374 PRK13634 cbiO cobalt transport 38.2 15 0.00039 16.2 1.2 27 106-132 18-46 (276)
375 PRK10895 putative ABC transpor 38.2 15 0.00039 16.2 1.2 27 106-132 27-55 (241)
376 COG1105 FruK Fructose-1-phosph 38.1 26 0.00066 14.7 4.4 29 218-246 128-162 (310)
377 PRK00856 pyrB aspartate carbam 38.0 26 0.00066 14.7 7.0 11 93-103 21-31 (304)
378 PRK09984 phosphonate/organopho 38.0 18 0.00046 15.7 1.5 26 106-131 28-55 (262)
379 pfam02562 PhoH PhoH-like prote 37.9 26 0.00066 14.7 2.6 39 336-380 119-157 (205)
380 PRK03846 adenylylsulfate kinas 37.9 26 0.00066 14.7 3.2 36 100-135 16-53 (198)
381 PRK13582 thrH phosphoserine ph 37.6 26 0.00067 14.6 4.8 24 421-444 179-202 (205)
382 PRK09473 oppD oligopeptide tra 37.5 15 0.00039 16.2 1.1 31 106-136 40-72 (330)
383 cd03230 ABC_DR_subfamily_A Thi 37.4 16 0.00042 16.0 1.2 37 337-375 114-151 (173)
384 PRK13649 cbiO cobalt transport 37.3 17 0.00044 15.9 1.3 27 106-132 31-59 (280)
385 cd03267 ABC_NatA_like Similar 37.2 17 0.00042 15.9 1.2 26 107-132 46-73 (236)
386 TIGR02798 ligK_PcmE 4-carboxy- 37.2 27 0.00068 14.6 3.3 19 185-203 77-95 (222)
387 PRK13642 cbiO cobalt transport 37.1 16 0.00042 16.0 1.2 27 106-132 31-59 (277)
388 TIGR01193 bacteriocin_ABC ABC- 36.9 11 0.00028 17.2 0.3 49 23-73 71-132 (710)
389 KOG0479 consensus 36.9 27 0.00069 14.6 3.7 77 39-120 288-373 (818)
390 PRK13768 GTPase; Provisional 36.8 15 0.00037 16.3 0.9 113 339-468 133-246 (253)
391 PRK13635 cbiO cobalt transport 36.7 17 0.00044 15.9 1.3 27 106-132 31-59 (279)
392 TIGR01950 SoxR redox-sensitive 36.7 16 0.00042 16.0 1.1 28 297-326 47-74 (142)
393 PRK13231 nitrogenase reductase 36.6 15 0.00038 16.3 0.9 29 109-137 3-33 (264)
394 cd03268 ABC_BcrA_bacitracin_re 36.6 17 0.00043 15.9 1.2 28 106-133 24-53 (208)
395 COG4917 EutP Ethanolamine util 36.5 27 0.0007 14.5 3.2 53 156-214 61-116 (148)
396 PRK13641 cbiO cobalt transport 36.4 17 0.00043 15.9 1.2 31 106-136 31-64 (286)
397 PRK13638 cbiO cobalt transport 36.3 17 0.00044 15.9 1.2 27 106-132 25-53 (271)
398 PRK11147 ABC transporter ATPas 36.1 18 0.00047 15.7 1.3 34 25-62 17-50 (632)
399 cd03224 ABC_TM1139_LivF_branch 36.0 17 0.00044 15.9 1.2 27 106-132 24-52 (222)
400 PRK11614 livF leucine/isoleuci 36.0 17 0.00043 15.9 1.1 26 106-131 29-56 (237)
401 pfam04851 ResIII Type III rest 36.0 28 0.00071 14.5 2.9 24 104-128 17-40 (103)
402 cd03293 ABC_NrtD_SsuB_transpor 35.6 18 0.00045 15.8 1.2 27 106-132 28-56 (220)
403 TIGR03522 GldA_ABC_ATP gliding 35.6 17 0.00045 15.8 1.1 28 106-133 26-55 (301)
404 TIGR00041 DTMP_kinase thymidyl 35.5 13 0.00033 16.7 0.5 23 117-139 13-37 (211)
405 PRK07560 elongation factor EF- 35.4 28 0.00073 14.4 3.1 13 350-362 404-416 (730)
406 PRK12367 short chain dehydroge 35.3 29 0.00073 14.4 2.5 33 105-138 14-46 (250)
407 COG1102 Cmk Cytidylate kinase 35.3 24 0.0006 14.9 1.8 22 110-131 2-25 (179)
408 PRK13636 cbiO cobalt transport 35.3 18 0.00047 15.7 1.2 26 106-131 30-57 (285)
409 cd03221 ABCF_EF-3 ABCF_EF-3 E 35.1 18 0.00045 15.8 1.1 26 106-131 24-51 (144)
410 COG0003 ArsA Predicted ATPase 35.1 17 0.00044 15.8 1.0 27 109-135 3-31 (322)
411 PRK13648 cbiO cobalt transport 34.9 19 0.00049 15.5 1.3 27 106-132 33-61 (269)
412 cd05213 NAD_bind_Glutamyl_tRNA 34.9 29 0.00074 14.4 6.5 89 348-453 156-249 (311)
413 KOG0927 consensus 34.9 29 0.00074 14.4 5.1 38 427-471 542-579 (614)
414 PRK11264 putative amino-acid A 34.8 19 0.00048 15.6 1.2 26 106-131 25-52 (248)
415 PRK10908 cell division protein 34.6 17 0.00044 15.9 1.0 27 106-132 26-54 (222)
416 KOG0447 consensus 34.6 22 0.00057 15.1 1.5 23 107-129 307-331 (980)
417 PRK00062 glutamate-1-semialdeh 34.6 20 0.00051 15.4 1.3 50 344-402 298-347 (429)
418 cd03244 ABCC_MRP_domain2 Domai 34.5 20 0.0005 15.5 1.3 26 106-131 28-55 (221)
419 pfam01784 NIF3 NIF3 (NGG1p int 34.5 29 0.00075 14.3 5.1 30 370-410 171-200 (238)
420 COG4167 SapF ABC-type antimicr 34.4 30 0.00075 14.3 2.2 48 84-131 3-64 (267)
421 cd03245 ABCC_bacteriocin_expor 34.4 21 0.00053 15.3 1.4 26 106-131 28-55 (220)
422 cd03233 ABC_PDR_domain1 The pl 34.3 19 0.00048 15.6 1.1 26 106-131 31-58 (202)
423 cd03369 ABCC_NFT1 Domain 2 of 34.3 26 0.00065 14.7 1.8 27 106-132 32-60 (207)
424 PRK03743 pdxA 4-hydroxythreoni 34.3 30 0.00076 14.3 3.7 20 347-366 310-329 (333)
425 PRK13946 shikimate kinase; Pro 34.2 18 0.00046 15.7 1.0 27 105-132 20-46 (195)
426 PRK13695 putative NTPase; Prov 34.2 26 0.00067 14.6 1.9 25 110-134 5-31 (174)
427 cd03379 beta_CA_cladeD Carboni 34.2 22 0.00056 15.1 1.5 15 31-45 10-31 (142)
428 TIGR01394 TypA_BipA GTP-bindin 34.2 19 0.00049 15.5 1.2 60 57-120 115-177 (609)
429 PRK01506 consensus 34.1 30 0.00076 14.3 8.2 91 338-444 219-309 (317)
430 PRK13643 cbiO cobalt transport 34.1 20 0.00051 15.4 1.2 27 106-132 30-58 (288)
431 cd03254 ABCC_Glucan_exporter_l 34.0 20 0.0005 15.5 1.2 26 106-131 27-54 (229)
432 TIGR00618 sbcc exonuclease Sbc 34.0 30 0.00077 14.3 2.2 27 107-135 29-57 (1063)
433 cd03255 ABC_MJ0796_Lo1CDE_FtsE 33.9 19 0.0005 15.5 1.2 27 106-132 28-56 (218)
434 PRK10247 putative ABC transpor 33.9 21 0.00053 15.3 1.3 27 106-132 31-59 (225)
435 TIGR03591 polynuc_phos polyrib 33.9 28 0.00072 14.4 2.0 42 6-47 10-51 (684)
436 cd04246 AAK_AK-DapG-like AAK_A 33.8 11 0.00029 17.0 -0.0 30 93-122 15-46 (239)
437 TIGR01307 pgm_bpd_ind 2,3-bisp 33.5 31 0.00078 14.2 6.3 73 391-466 436-513 (529)
438 pfam03142 Chitin_synth_2 Chiti 33.3 31 0.00078 14.2 3.4 18 114-131 69-86 (536)
439 PRK10246 exonuclease subunit S 33.2 31 0.00079 14.2 2.8 12 441-452 500-511 (1047)
440 cd01673 dNK Deoxyribonucleosid 33.1 22 0.00056 15.2 1.3 21 110-130 1-23 (193)
441 cd03265 ABC_DrrA DrrA is the A 33.0 21 0.00053 15.3 1.2 27 106-132 24-52 (220)
442 PRK13137 consensus 32.8 31 0.0008 14.1 4.9 53 91-152 5-62 (266)
443 PRK13948 shikimate kinase; Pro 32.8 13 0.00033 16.7 0.1 25 109-133 11-37 (182)
444 pfam05049 IIGP Interferon-indu 32.8 31 0.0008 14.1 3.7 35 90-124 16-53 (375)
445 PRK01909 pdxA 4-hydroxythreoni 32.7 31 0.0008 14.1 4.1 17 348-364 307-323 (329)
446 PRK00230 orotidine 5'-phosphat 32.7 31 0.0008 14.1 4.0 29 390-418 139-167 (231)
447 PRK09493 glnQ glutamine ABC tr 32.5 22 0.00055 15.2 1.2 26 106-131 25-52 (240)
448 PRK13548 hmuV hemin importer A 32.3 22 0.00057 15.1 1.3 26 106-131 26-53 (257)
449 TIGR01011 rpsB_bact ribosomal 32.3 32 0.00081 14.1 3.8 10 311-320 105-114 (227)
450 cd02030 NDUO42 NADH:Ubiquinone 32.2 23 0.00058 15.0 1.3 21 110-130 1-23 (219)
451 cd03251 ABCC_MsbA MsbA is an e 32.2 22 0.00056 15.2 1.2 25 106-130 26-52 (234)
452 PRK10762 D-ribose transporter 32.0 24 0.00061 14.9 1.4 51 1-62 1-51 (501)
453 KOG2749 consensus 31.9 32 0.00083 14.0 4.7 50 84-133 78-131 (415)
454 COG0288 CynT Carbonic anhydras 31.9 28 0.00072 14.4 1.7 24 101-124 84-107 (207)
455 PRK13549 xylose transporter AT 31.9 24 0.00061 14.9 1.4 51 1-62 2-52 (513)
456 PRK00676 hemA glutamyl-tRNA re 31.8 33 0.00083 14.0 5.3 22 432-453 311-332 (338)
457 cd03263 ABC_subfamily_A The AB 31.6 23 0.00059 15.0 1.2 27 106-132 26-54 (220)
458 pfam05711 TylF Macrocin-O-meth 31.6 30 0.00076 14.3 1.8 11 336-347 205-215 (249)
459 TIGR00259 TIGR00259 conserved 31.5 23 0.00059 15.0 1.2 138 45-219 12-177 (261)
460 PRK05472 redox-sensing transcr 31.5 33 0.00084 14.0 3.6 19 302-320 38-56 (211)
461 PRK11124 artP arginine transpo 31.4 23 0.00058 15.1 1.2 26 106-131 26-53 (242)
462 cd03214 ABC_Iron-Siderophores_ 31.3 23 0.00059 15.0 1.2 26 106-131 23-50 (180)
463 cd03234 ABCG_White The White s 31.3 21 0.00054 15.2 1.0 27 106-132 31-59 (226)
464 PRK11300 livG leucine/isoleuci 31.1 23 0.00058 15.0 1.1 26 106-131 29-56 (255)
465 cd03217 ABC_FeS_Assembly ABC-t 31.1 29 0.00074 14.3 1.7 37 337-375 123-160 (200)
466 cd03249 ABC_MTABC3_MDL1_MDL2 M 30.9 27 0.00068 14.6 1.5 26 106-131 27-54 (238)
467 TIGR00379 cobB cobyrinic acid 30.9 27 0.00068 14.6 1.5 165 160-346 80-262 (464)
468 COG0763 LpxB Lipid A disacchar 30.8 34 0.00086 13.9 3.9 21 96-116 18-39 (381)
469 PRK13973 thymidylate kinase; P 30.6 34 0.00087 13.9 2.3 29 107-135 2-32 (216)
470 PRK02269 ribose-phosphate pyro 30.6 34 0.00087 13.9 11.2 60 338-409 219-278 (321)
471 TIGR02746 TraC-F-type type-IV 30.6 24 0.00061 14.9 1.2 77 337-418 735-816 (900)
472 PRK05342 clpX ATP-dependent pr 30.5 12 0.00031 16.9 -0.4 26 108-134 112-137 (411)
473 pfam02492 cobW CobW/HypB/UreG, 30.4 34 0.00086 13.9 1.9 21 109-132 1-23 (174)
474 PRK10744 phosphate transporter 30.3 34 0.00088 13.9 2.1 26 106-131 34-61 (257)
475 PRK11248 tauB taurine transpor 30.3 25 0.00063 14.8 1.2 27 106-132 25-53 (255)
476 PRK02224 chromosome segregatio 30.2 35 0.00088 13.9 2.3 25 106-130 21-47 (880)
477 cd03253 ABCC_ATM1_transporter 30.2 25 0.00063 14.8 1.2 25 107-131 26-52 (236)
478 PRK05312 pdxA 4-hydroxythreoni 30.2 35 0.00088 13.8 3.6 70 48-117 132-216 (336)
479 cd03223 ABCD_peroxisomal_ALDP 30.2 23 0.0006 15.0 1.1 25 107-131 26-52 (166)
480 PRK10575 iron-hydroxamate tran 30.1 26 0.00066 14.7 1.3 26 106-131 35-62 (265)
481 PRK05035 electron transport co 30.1 35 0.00088 13.8 3.6 110 23-152 191-320 (725)
482 PRK11288 araG L-arabinose tran 30.0 32 0.00083 14.0 1.8 22 106-127 28-51 (501)
483 cd03218 ABC_YhbG The ABC trans 29.9 26 0.00065 14.7 1.2 26 106-131 24-51 (232)
484 PRK10619 histidine/lysine/argi 29.9 26 0.00066 14.7 1.2 26 106-131 29-56 (257)
485 PRK09544 znuC high-affinity zi 29.8 25 0.00065 14.7 1.2 25 107-131 29-55 (251)
486 PRK11701 phnK phosphonates tra 29.7 26 0.00065 14.7 1.2 25 107-131 31-57 (258)
487 PRK07247 DNA polymerase III su 29.7 34 0.00087 13.9 1.8 85 164-248 23-116 (195)
488 cd06201 SiR_like2 Cytochrome p 29.7 35 0.0009 13.8 4.7 36 430-466 231-266 (289)
489 pfam00076 RRM_1 RNA recognitio 29.6 35 0.0009 13.8 2.4 61 307-372 9-69 (70)
490 cd03282 ABC_MSH4_euk MutS4 hom 29.6 35 0.0009 13.8 2.5 28 107-134 28-59 (204)
491 COG1121 ZnuC ABC-type Mn/Zn tr 29.5 35 0.0009 13.8 2.1 22 106-130 28-51 (254)
492 pfam05872 DUF853 Bacterial pro 29.5 25 0.00064 14.8 1.1 27 107-134 23-49 (504)
493 TIGR02153 gatD_arch glutamyl-t 29.5 36 0.00091 13.8 3.6 54 53-107 320-390 (413)
494 PRK00934 ribose-phosphate pyro 29.5 36 0.00091 13.8 9.5 161 294-464 7-176 (286)
495 PRK00168 coaD phosphopantethei 29.3 36 0.00091 13.7 6.3 76 371-455 2-92 (159)
496 PRK06031 phosphoribosyltransfe 29.2 36 0.00091 13.7 5.2 88 296-394 96-203 (233)
497 cd03243 ABC_MutS_homologs The 29.1 36 0.00092 13.7 2.3 24 107-130 28-53 (202)
498 PRK13813 orotidine 5'-phosphat 29.1 36 0.00092 13.7 4.3 59 35-105 157-215 (215)
499 PRK11022 dppD dipeptide transp 29.0 27 0.00069 14.6 1.2 32 107-138 32-65 (327)
500 PRK11557 putative DNA-binding 29.0 36 0.00092 13.7 4.7 62 35-96 175-238 (282)
No 1
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=858.81 Aligned_cols=430 Identities=37% Similarity=0.550 Sum_probs=402.5
Q ss_pred EECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCC----CCCCCCCCCEEEECCH-HHHHHHHHHHHHHCC
Q ss_conf 40222378988897168874768889999986988999855212----4554469728995998-999999999998306
Q gi|254781101|r 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIGSLSIPVFGVDDV-LGALNKLAVAARLRS 106 (472)
Q Consensus 32 ~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~----~~~~~~~~~~i~v~d~-~~al~~la~~~~~~~ 106 (472)
+|||+++||+|||||+|+|||||+||++|+++||.|+|+++++. +...+...++|+|+|| +.||++||+++|.++
T Consensus 1 ~DSR~~~~g~LF~AL~G~~fDGH~F~~~A~~~GA~Avl~~r~v~~e~~~~~~~~~~~~~~V~DtV~~AL~~lA~~~~~~~ 80 (462)
T TIGR01143 1 TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDREVESEVVKYNPDNGLPQILVDDTVLAALQALASAKREKF 80 (462)
T ss_pred CCCCEECCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 98643158704750688998634679999857966999970777057510379985289980658999999999999743
Q ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHHC----CCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 993--99983036542012334677775201----122212211014574100012322144430156644332112122
Q gi|254781101|r 107 KAT--IIAITGSVGKTTTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 (472)
Q Consensus 107 ~~~--vI~ITGTnGKTTt~~~l~~iL~~~~~----~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472)
+++ |||||||+||||||||+++||++.|+ |++|+|||||+||+|+|||++++++||+|+|||||++|||.+|++
T Consensus 81 ~~~~~~igiTGS~GKTTtKEm~~~iL~~~~~~~~aV~~t~GN~Nn~iGlPltlL~~~~~~~~aV~EmG~s~~GEI~~L~~ 160 (462)
T TIGR01143 81 SAKRRVIGITGSSGKTTTKEMLAAILSHKYKDSEAVLATPGNFNNEIGLPLTLLRATEDHDYAVLEMGASHPGEIAYLAE 160 (462)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99758999856896067999999999853597532362488767613567887507888805999843898873789998
Q ss_pred CCCCCEEEEEEECCCHHHH---HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CC
Q ss_conf 3232202555312101234---4457888865433103762210121013424689987520123333322222222-22
Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSN---FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NA 256 (472)
Q Consensus 181 i~~P~iaiiTNI~~dHld~---~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~-~a 256 (472)
|++|||+|||||+++||+. |||+|.|++||.+||+++++++++|+|.||+++..|.......+...+++||.+. ..
T Consensus 161 i~~P~ia~itNi~~AHl~~F~~Fgs~~~Ia~aK~EI~~~~~~~~~a~~n~d~~~~~~~~~~~~~~~~~~~~~Fg~~~~~~ 240 (462)
T TIGR01143 161 IAKPDIALITNIGEAHLEGFGDFGSLEGIAEAKGEILQGLKENGIAVINADDPALAKFKKRLKILNKAKVLSFGLEGKYA 240 (462)
T ss_pred HHCCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
T ss_conf 61998699917047876115787538999999999970789775898535256889999841115786478814777634
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 222344211346510012456543221222-22222-3333221035676510121034554311476644331010003
Q gi|254781101|r 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-GIGYH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472)
Q Consensus 257 d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~~G~h-nv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472)
|++..++.....+..|++..+++.+.+.|| ++|.| |+.|+++|+|+++.+|++++++.++|..+++++||++...
T Consensus 241 d~~~~~~~~~~~g~~f~~~~~~~~~~v~LP~~~G~h~n~~NalaA~Ala~~lG~~~~~~~~gL~~~~~~~gR~~~~~--- 317 (462)
T TIGR01143 241 DVSAEDVSLSELGTGFTLVTPGGEIEVELPILLGRHPNVENALAAAALALALGLPLEEIAEGLSELKPVKGRLEVIQ--- 317 (462)
T ss_pred CEEEECCEECCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEE---
T ss_conf 36884321215333589986370899983112088188999999999999809888899989764278876507898---
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH--
Q ss_conf 653113310002565321012577787411102-68713885123541710589999999999864998999988038--
Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-- 411 (472)
Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~-~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~-- 411 (472)
..++++||||||||||+||++||+.|..++..+ .+|||+|||||+|||+.+.++|+++++++...+++.||++|+.+
T Consensus 318 ~~~g~~~IdD~YNAnp~Sm~AAl~~L~~~~~~~E~g~~~~VLG~M~ELG~~s~~~H~~vg~~a~~~~~~~~~~~G~~~~~ 397 (462)
T TIGR01143 318 TKKGLTLIDDTYNANPDSMRAALDALARFPGKGEVGKKILVLGDMLELGELSEELHAEVGRYAAALGIDLVFLVGEEASP 397 (462)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 64874898441359889999999996138888863546899838453117999999999999986287389984773350
Q ss_pred ---HHHHHHCCCC-----CCEEEECCHHHHHHHHH----HHCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf ---9899851137-----97999789899999999----84478989999771325489999999
Q gi|254781101|r 412 ---LALKDALPRS-----IHVHYSETMDGLFLFIQ----SSLVDGDVVVVKSSNSCGFYRLINLL 464 (472)
Q Consensus 412 ---~~~~~~~~~~-----~~~~~~~~~e~a~~~l~----~~~~~gdiVLiKGSr~~~le~iv~~L 464 (472)
+.+.+.+... ...++|.+.+++++.++ ....++|+||||||||++||+||+.|
T Consensus 398 ~~~~~~~~~~~~~e~~~~~~~~~f~~~~~l~~~L~~~~~~~~~~~~~vLvKGSR~~~le~vv~~L 462 (462)
T TIGR01143 398 NTVAVIADSLGSGEKLVKKQGKHFADKDELLAFLKDLNELQVGEGDVVLVKGSRSVKLEKVVEAL 462 (462)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCC
T ss_conf 26999999855896504688875179889999987533112578608999536423678998409
No 2
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=0 Score=839.08 Aligned_cols=431 Identities=29% Similarity=0.410 Sum_probs=397.3
Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 71474677402223789888971688747688899999869889998552124554469728995998999999999998
Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472)
Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472)
+....+||+|||+|+||++||||+|+++|||+||++|+++||+++|++++. ...++|+|.|+|+++||++||++||
T Consensus 511 ~~~~~~isiDSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~----~~~~~p~I~V~Dt~~AL~~lA~~~r 586 (953)
T PRK11929 511 KEISGAVSTDSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQV----ADVALPQLVLGDTLAALGRMATAWR 586 (953)
T ss_pred HHHCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCC----CCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 876185674377368898899971487777999999998699799992566----6678897996898999999999999
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH----HHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 30699399983036542012334677775----20112221221101457410001232214443015664433211212
Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 (472)
Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~----~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~ 179 (472)
.+++.+||||||||||||||+|++++|++ .|+|++|+|||||+||+|+|+++++++++++|+|||||++|||.+|+
T Consensus 587 ~~~~~~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN~iGvPltll~l~~~~~~aVlEmGms~~GEI~~L~ 666 (953)
T PRK11929 587 SSFSLPVIAITGSNGKTTTKEMIAAILAQWQGDDGRVTATEGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIARLA 666 (953)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 75799789996788507899999999985177784388556743786667178757996346578765289622699860
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23232202555312101234445788886543310376221012101342468998752012333332222222222222
Q gi|254781101|r 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 (472)
Q Consensus 180 ~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~ 259 (472)
++++||++|||||+++|||+|||+|+|+++|++||++++++|++|+|.||+++..+...+..... ..++|+.+..+|++
T Consensus 667 ~i~~PdiaVITNIg~aHLe~fgs~e~Ia~aK~eIf~~l~~~g~aIlN~DD~~~~~~~~~~~~~~i-~~fg~~~~~~adi~ 745 (953)
T PRK11929 667 AIAAPTVALVTNAQREHQEFLHSVEAVARANGALINALPEDGIAVVNGDDPYAAIWAKLAGARRV-LRFGLSLQPGLDVY 745 (953)
T ss_pred CCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCE-EEEEECCCCCCCEE
T ss_conf 62589778874456998766189999999999998315879799993886889999998457875-99985258987689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf 34421134651001245654322122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472)
Q Consensus 260 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472)
..++.....+..+.+...++...+.++++|.||++|+++|++++..+|+++++|.++|.+|++++||+++.+. .+++
T Consensus 746 ~~~i~~~~~g~~~~~~~~~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~~~gR~e~~~~---~~g~ 822 (953)
T PRK11929 746 AEDIVTQAAGTLCFVVTPAGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQAVKGRMQRRQL---SDGT 822 (953)
T ss_pred EEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEE---CCCE
T ss_conf 9998986896499999789569999568979999999999999999399999999998669999998789995---7997
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472)
Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472)
++|||||||||+||++||++|..++ .+|||+|||||+|||+.++++|+++++++.+.++|.|+++|+.++.+.+.++
T Consensus 823 ~iIDDsYNANP~Sm~aAl~~L~~~~---~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG~~~~~~~~~~~ 899 (953)
T PRK11929 823 VIIDDTYNANPDSMRAAIDVLARLP---GPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITLGEASRDAAHAFG 899 (953)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC
T ss_conf 9999784888999999999985287---9986999848500245789999999999997599999998657999986568
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37979997898999999998447898999977132548999999998
Q gi|254781101|r 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472)
Q Consensus 420 ~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472)
.. ...+|++.+++...+++.+.+||+|||||||+|+||+||+.|+.
T Consensus 900 ~~-~~~~~~~~~~l~~~L~~~l~~~d~VLVKGSR~m~lE~iV~~l~~ 945 (953)
T PRK11929 900 KA-ARACFASVDEIIAALRGLLPSSDIVLIKGSRFMRLERVVTAFST 945 (953)
T ss_pred CC-CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 46-57883999999999985589999999971560469999999972
No 3
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=0 Score=823.40 Aligned_cols=447 Identities=30% Similarity=0.438 Sum_probs=414.6
Q ss_pred CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 95435678899872799952688714746774022237898889716887476888999998698899985521245544
Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472)
Q Consensus 1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472)
|.+| |+++|+++++|+|++. |.+|++|++|||+++||++||||+|+++|||+||++|+++||+++|++++. +
T Consensus 1 m~~~-~l~~ia~~~~g~l~~~--d~~i~~i~~DSR~v~~g~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~~~~~-----~ 72 (452)
T PRK10773 1 MISV-TLSQLADILNAELQGA--DITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADQAKAAGAGALLVSRPL-----D 72 (452)
T ss_pred CCCC-CHHHHHHHHCCEEECC--CCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----C
T ss_conf 9647-6999999869999889--815778996587179998899944798997999999998699899984766-----8
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC
Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221
Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472)
Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472)
.++|++.|+|+++||+.+|+++|.+++.++||||||||||||++|++++|++.|++++++||+||++|+|+|++++++++
T Consensus 73 ~~~~~i~V~d~~~al~~la~~~~~~~~~~vIgITGSnGKTTtk~~i~~iL~~~g~~~~t~gn~n~~iG~p~tl~~~~~~~ 152 (452)
T PRK10773 73 IDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPLTLLRLTPEY 152 (452)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCHH
T ss_conf 99998998999999999999875159975899991699625999999999972884124565268878660765079213
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC
Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201
Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472)
Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472)
+++|+|+|++++|||.+++++++||++|||||++||||+|||+|+|+++|++||++++++|++|+|.||+....+.....
T Consensus 153 ~~~v~E~g~~~~gei~~~~~~~~pdiaviTNI~~dHLd~~gs~e~~~~aK~~Lf~~l~~~g~~IlN~Dd~~~~~~~~~~~ 232 (452)
T PRK10773 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQSVIG 232 (452)
T ss_pred HHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHC
T ss_conf 35785323798535676640026675999842477654057699999999999817887989999798767999999837
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 2333332222222-222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472)
Q Consensus 241 ~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472)
. +.+++|+.+ ..+|++..++.....+..|.+..+++.+++.+|++|.||++|+++|++++..+|+++++|.++|++
T Consensus 233 ~---~~v~~~~~~~~~~d~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hnv~NalaAiava~~lG~~~~~i~~~L~~ 309 (452)
T PRK10773 233 S---RKVWRFSPNAANSDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLAN 309 (452)
T ss_pred C---CEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9---8289980687776189999999189418999967951899970761768998999999999859999999999972
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472)
Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472)
|+|+||||++++. .++.++|||||||||+||++||++|+.++ +|||+|||||+|||+.+.++|+++++++...
T Consensus 310 ~~~v~GRme~i~~---~~g~~iIdDsYNAnP~Sm~aal~~l~~~~----~~ki~VLGdM~ELG~~s~~~H~~v~~~~~~~ 382 (452)
T PRK10773 310 LKAVPGRLFPIQL---AENQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHRQVGEAAKAA 382 (452)
T ss_pred CCCCCCCEEEEEC---CCEEEEEEECCCCCHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 8998674079973---87089997425699799999999997577----9769998773772857899999999999976
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCE--EEEECCCHHHHHHHHHHHHHHC
Q ss_conf 99899998803898998511379799978989999999984478989--9997713254899999999850
Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdi--VLiKGSr~~~le~iv~~L~~~~ 468 (472)
++|.|+++|+.++.+.+.... ..+|++.+++...+.+.+.++|+ |||||||+|+||+|++.|+++.
T Consensus 383 ~id~v~~vG~~~~~~~~~~~~---~~~f~~~~~~~~~l~~~l~~~~~~~vLvKGSr~~~le~iv~~L~~~~ 450 (452)
T PRK10773 383 GIDRVLSVGKLSQAISTASGV---GEHFADKTALIARLKALLAEQQVITILVKGSRSAAMEEVVRALQEKG 450 (452)
T ss_pred CCCEEEEECHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 999999988789999874187---63369999999999988744998489998575114999999999625
No 4
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=0 Score=805.25 Aligned_cols=453 Identities=25% Similarity=0.339 Sum_probs=411.9
Q ss_pred CCHHHHHHHHCCEEECCC--CCCEEEEEEEECCCCC--CCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 567889987279995268--8714746774022237--898889716887476888999998698899985521245544
Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472)
Q Consensus 5 ~~~~~l~~~~~g~~~~~~--~~~~i~~i~~dSr~v~--~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472)
+|+++|++++||+.++.. +|..|++|++|||++. +|+|||||+|+|+|||+||++|+++||+++|++++.......
T Consensus 3 ~~~~~i~~~~g~~~~g~~~~~~~~I~~i~tDSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~~~~~~ 82 (824)
T PRK11930 3 ISIEELIRVLGANRVGGKTEFDAFIDQLLIDSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPKDLMEK 82 (824)
T ss_pred EEHHHHHHHHCCEEECCCCCCCCEECEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 40999998639788578888883236399358876579986899956788887999999998899099994566554557
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC
Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221
Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472)
Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472)
.+.++|.|+||++||++||++||+++++|||||||||||||||+||+++|+..++|++|+|||||+||||+|++++++++
T Consensus 83 ~~~~~i~V~Dtl~ALq~LA~~~R~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~T~gn~Nn~IGvPLTll~l~~~~ 162 (824)
T PRK11930 83 KPANFLIVKNPLKALQKLAAYYRKQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQMNEEH 162 (824)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 88778998989999999999999748998999949997899999999997457868528876687425899986498458
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC
Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201
Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472)
Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472)
+++|+|||||++|||.+|+++++|+++|||||+++|+|+|||+|++++||.+||+++ +.+++|.||+....+.....
T Consensus 163 e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~~---~~~i~n~d~~~~~~~~~~~~ 239 (824)
T PRK11930 163 ELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFFDIQEKCMEKLKLFKDC---DVIIYNGDNEEISNCIHKSN 239 (824)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHC
T ss_conf 089999078981469999535279999990750987664589999999999976217---81799468578999997633
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 23333322222-22222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472)
Q Consensus 241 ~~~~~~i~~~g-~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472)
... ..++|+ .+..+++++..+....++..|.+.+.+....+.+|++|.||++|+++|++++..+|+++++|.++|++
T Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava~~lGv~~~~i~~~L~~ 317 (824)
T PRK11930 240 LTR--REIAWSRTDSEAPLYISRSEKKEFHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVALYLMYSADQITKRFAR 317 (824)
T ss_pred CCC--CEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 676--289983478665346665430588169999968906999936998899999999999999839999999999841
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472)
Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472)
|+|++||++..+ ..+++++|||||||||+||++||++|..++. .+|||+|||||+|||..++.+|+++++++.+.
T Consensus 318 ~~p~~~Rlev~~---g~~g~~iIdDsYNAnP~Sm~aALdtL~~~~~--~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~ 392 (824)
T PRK11930 318 LEPVEMRLEVKE---GINNCTLINDSYNSDLASLDIALDFLERRKQ--SKKKTLILSDILQSGQSPEELYRKVAQLISSA 392 (824)
T ss_pred CCCCCCEEEEEE---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 896545137999---7998099956666998999999999974035--78569998774432876078999999999976
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 998999988038989985113797999789899999999844789899997713254899999999850
Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
++|.++.+|++....+..+. .....+|.+.+++++.+.....++++||+||+|..+||++++.|.++-
T Consensus 393 ~i~~ligiG~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~iLikGar~~~~e~i~~~l~~~~ 460 (824)
T PRK11930 393 KINRVIGIGEEISSEAKKFE-GIEKYFFKDTEAFLASLEKKKFSNELILIKGSRKFQFEQISERLELKV 460 (824)
T ss_pred CCCEEEEECHHHHHHHHHCC-CCCEEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 88789981889999998645-776589568999974274113689779980554566899999996455
No 5
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=769.01 Aligned_cols=450 Identities=39% Similarity=0.551 Sum_probs=416.2
Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 35678899872799952688714746774022237898889716887476888999998698899985521245544697
Q gi|254781101|r 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 (472)
Q Consensus 4 ~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~ 83 (472)
+|++.+++.+++|.+++..+ ..++++++|||++.||++||||+|+++|||+|+++|+++||.+++++++....... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~~~~-~~ 79 (451)
T COG0770 2 LLTLDELADILGGALVGADP-VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPPAIP-LV 79 (451)
T ss_pred CCCHHHHHHHHCCCCCCCCC-CCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC-CC
T ss_conf 30089999971781136740-00106995246678885238716763564221889984597799992576786656-52
Q ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHH
Q ss_conf 28995998999999999998306993999830365420123346777752011222122110145741000123221444
Q gi|254781101|r 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 (472)
Q Consensus 84 ~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~ 163 (472)
++.|.|++++|++||++||++.+++|||||||+||||||+|++++|+..|+|++|+|||||+||+|+|+++++.++||+
T Consensus 80 -~~~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~~~~~e~~ 158 (451)
T COG0770 80 -VLLVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRLPADTEYA 158 (451)
T ss_pred -EEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHCCCCCCEE
T ss_conf -5875999999999999999736996899958997076999999998636807467876686544156897477766479
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 30156644332112122323220255531210123444578888654331037622101210134246899875201233
Q gi|254781101|r 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 (472)
Q Consensus 164 V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~ 243 (472)
|+||||||+|||..|+.+++||+++||||+++|+++|||+|+++++|.+|+.+++++|++|+|.|+++...+.... .
T Consensus 159 VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~---~ 235 (451)
T COG0770 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI---G 235 (451)
T ss_pred EEECCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC---C
T ss_conf 9986899777478884405898899838059998742889999999999981568786799878617778777635---7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 33322222222222223442113465100124565432212222222233332210356765101210345543114766
Q gi|254781101|r 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 (472)
Q Consensus 244 ~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~ 323 (472)
..++++||.+..+|+++.++.....+..|.+..++....+.++++|+||+.|+++|+++++.+|++.++|+++|+.+.++
T Consensus 236 ~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~~ 315 (451)
T COG0770 236 NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKPV 315 (451)
T ss_pred CCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 87579976887775256778983885079998068337999457847689999999999998199999999999863788
Q ss_pred CCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 44331010003653113310002565321012577787411102687138851235417105899999999998649989
Q gi|254781101|r 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 (472)
Q Consensus 324 ~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~ 403 (472)
+||+++. ...++.++|||+|||||+||+++++.+..++.. ++|+|+|||+|||+.+.++|+++++++...++|.
T Consensus 316 ~gR~~~~---~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~---~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~ 389 (451)
T COG0770 316 KGRLEVI---LLANGKTLIDDSYNANPDSMRAALDLLAALPGR---KGIAVLGDMLELGEESEELHEEVGEYAVEAGIDL 389 (451)
T ss_pred CCCCEEE---ECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 8663367---648981899737889989999999999637668---8579947766638548999999999998569509
Q ss_pred EEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9998803898998511379799978989999999984478989999771325489999999985
Q gi|254781101|r 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 (472)
Q Consensus 404 v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~ 467 (472)
+|++|+.++.+.+.++.. ..+|.+.+++.+.+...++++|+|||||||+++||++++.|+++
T Consensus 390 v~~~G~~~~~i~~~~~~~--~~~f~~~~~l~~~l~~~l~~gd~vLvKgSr~~~le~vv~~l~~~ 451 (451)
T COG0770 390 VFLVGELSKAIAEALGNK--GIYFADKEELITSLKALLRKGDVVLVKGSRGMKLEKVVDALLGK 451 (451)
T ss_pred EEEECCCHHHHHHHCCCC--EEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 999762069999865777--58607779999999985677878999737646579999998319
No 6
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=0 Score=630.72 Aligned_cols=422 Identities=26% Similarity=0.321 Sum_probs=354.7
Q ss_pred CCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 56788998727999526887147467740222378988897168874768889999986988999855212455446972
Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 (472)
Q Consensus 5 ~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~ 84 (472)
-.|.+|++.+.. ....|..|++|++|||+|+||++|||++|+++|||+||++|+++||+++|++++. ..++|
T Consensus 3 ~~l~~ll~~~~~---~~~~d~~i~gis~DSR~v~~g~lFval~G~~~DGh~fi~~Ai~~GA~avv~~~~~-----~~~~~ 74 (481)
T PRK00139 3 MKLRDLLAPLKA---DHVLDVEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEPDV-----EAAVP 74 (481)
T ss_pred CCHHHHHHHCCC---CCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----CCCCC
T ss_conf 468998623665---6788877779996377189997899916677898999999998699799984776-----78985
Q ss_pred EEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCC-----------CC
Q ss_conf 899599899999999999830--69939998303654201233467777520112221221101457-----------41
Q gi|254781101|r 85 VFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PL 151 (472)
Q Consensus 85 ~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGv-----------pl 151 (472)
+|.|+|++++|+.||+.|+.+ .+++|||||||||||||++|++++|+..|..+++.|+.+|.+|. |+
T Consensus 75 ~i~V~d~~~al~~la~~~y~~~~~~l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~~~~~lTTP~~l 154 (481)
T PRK00139 75 VIVVPDLRRALALLAAAFYGNPSDKLKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTLIPSGLTTPEAL 154 (481)
T ss_pred EEEECCHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEECCCCCCCCCHH
T ss_conf 99989999999999999870804318089995899843499999999987498631430221141873036678988768
Q ss_pred HHCCC-----CCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
Q ss_conf 00012-----3221444301566443321121223232202555312101234445788886543310376221012101
Q gi|254781101|r 152 TLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 (472)
Q Consensus 152 tll~~-----~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN 226 (472)
++.++ +.+++++|||+| ||.-++.++.. ++|++|+||||++||||+|||+|+|+++|.+||..+.+ +.+|+|
T Consensus 155 ~L~~~l~~~~e~g~~~~vmEvS-Shgl~q~Rv~g-i~fdiav~TNIs~DHLD~Hgs~e~Y~~aK~~Lf~~~~~-~~aViN 231 (481)
T PRK00139 155 DLQRLLAEAVDAGATHVAMEVS-SHALDQGRVDG-LTFDVAVFTNLTRDHLDYHGTMEDYFAAKALLFAELGL-KAAVIN 231 (481)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-HHHHHHCCCCC-CCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCC-CCEEEE
T ss_conf 8999999999879977999843-03555221348-87568999657677853437899999999999746578-824994
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 34246899875201233333222222-22222223442113465100124565432212222222233332210356765
Q gi|254781101|r 227 YDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 (472)
Q Consensus 227 ~Dd~~~~~l~~~~~~~~~~~i~~~g~-~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~ 305 (472)
.||++...+...... .+++||. ++.+|+++.++.....+..|.+..+++.+++.++++|.||++|+++|++++..
T Consensus 232 ~DD~~~~~~~~~~~~----~~it~g~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hNv~NalaAiava~~ 307 (481)
T PRK00139 232 ADDEVGARLLAALPA----TVVTYSIEDHGADLRATDIEFSAQGVSFTLVTPWGEGEVESPLIGRFNVSNLLAAIAALLA 307 (481)
T ss_pred CCCHHHHHHHHHCCC----CCCEECCCCCCCEEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 688899999997178----8525404788860899999984896199999589379999678878889879999999998
Q ss_pred HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCH
Q ss_conf 10121034554311476644331010003653113310002565321012577787411102687138851235417105
Q gi|254781101|r 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 (472)
Q Consensus 306 lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~ 385 (472)
+|++.++|.++|++|++++||||++. ..++.++|+| |||||+||+++|++|+.+. ++|+|+||| +|.++
T Consensus 308 lGi~~~~i~~~L~~~~~v~GRmE~i~---~~~~~~vivD-YAHtP~sl~~~L~~lr~~~---~~rli~VfG----~gG~R 376 (481)
T PRK00139 308 LGVPLEDILKALAKLRPVPGRMERVG---AGGGPLVIVD-YAHTPDALEKVLDALRPHA---KGRLICVFG----CGGDR 376 (481)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCEEEE---CCCCCEEEEE-CCCCHHHHHHHHHHHHHHC---CCCEEEEEC----CCCCC
T ss_conf 39898999999834999999868998---7999689997-6899899999999998764---898699989----86777
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHCCC---CCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECC
Q ss_conf 899999999998649989999880-----38989985113---79799978989999999984478989999--771
Q gi|254781101|r 386 QSFHIDLAEVLSLYNISHVWLSGF-----HVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472)
Q Consensus 386 ~~~h~~i~~~~~~~~~d~v~~~G~-----~~~~~~~~~~~---~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472)
++..|..+..++....|.+|+.-+ +...+.+.+.. ..++....++++|++.+.+.+.+||+||+ ||.
T Consensus 377 d~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~~i~~g~~~~~~~~i~dR~~AI~~ai~~a~~~d~vliaGKGh 453 (481)
T PRK00139 377 DKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGITHANAVVIEDRAEAIKYAIALAKPGDVVLIAGKGH 453 (481)
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 70141899999997199899939998998999999999826987992897899999999998559999999973587
No 7
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=0 Score=592.53 Aligned_cols=416 Identities=24% Similarity=0.312 Sum_probs=348.1
Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 71474677402223789888971688747688899999869889998552124554469728995998999999999998
Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472)
Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472)
-..|..++.|||+|+||++|||++|.++|||+||++|+++||+++|++++.... ...++|+|.|+|++++|+.||+.++
T Consensus 26 ~~~~~~it~DSR~V~~G~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~e~~~~~~-~~~~~~~i~V~d~r~al~~la~~fy 104 (953)
T PRK11929 26 VAATADLRLDSREVAPGDVFVACRGGASDGRAFIDQALARGAAVVIYEAEGAPV-APAGCLALPVADLRKALGELADEWY 104 (953)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 776455656654179999899945287788999999998699799991664444-6789719997989999999999986
Q ss_pred HCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC------CCCH------H----CCC-CCCCHHHH
Q ss_conf 306--993999830365420123346777752011222122110145------7410------0----012-32214443
Q gi|254781101|r 104 LRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------VPLT------L----ARM-PVDVDFGI 164 (472)
Q Consensus 104 ~~~--~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iG------vplt------l----l~~-~~~~~~~V 164 (472)
.++ +.++||||||||||||++|++++|+..|..+++.|+.++.+| .|+| + .+| +.+++++|
T Consensus 105 ~~ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~iGTlg~~~~~~~~~~~~~TTP~~~~l~~~l~~~~~~g~~~~v 184 (953)
T PRK11929 105 GKPSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSIGTLGARLPDGQSLGGSLTTPDVITLHRLLARMRAAGADAVA 184 (953)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 49675887899979997999999999999867998899832454058764467899994899999999999976997999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 01566443321121223232202555312101234445788886543310376221012101342468998752012333
Q gi|254781101|r 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 (472)
Q Consensus 165 ~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~ 244 (472)
||+| ||.-+..|+.. ++|++++|||+++||||||||+|+|+++|++||+.+++.+.+|+|.||++...+.......
T Consensus 185 mEvS-SHgL~q~Rv~g-i~fdvaifTNls~DHLDyH~tme~Y~~aK~~LF~~l~~~~~aViN~Dd~~~~~l~~~~~~~-- 260 (953)
T PRK11929 185 MEAS-SHGLEQGRLDG-IRFAVAGFTNLTRDHLDYHGTMEDYEQAKAALFEQWPPLGAAVINADDPAGERLLASLPAA-- 260 (953)
T ss_pred EEEC-HHHHHHHHHCC-CCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC--
T ss_conf 9833-06776434208-7878899947976786654899999999999998741086699979888899999871278--
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 3322222-222222223442113465100124565432212222222233332210356765101210345543114766
Q gi|254781101|r 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 (472)
Q Consensus 245 ~~i~~~g-~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~ 323 (472)
.+.+|+ .+.++|+++.++.....+..|.+.++++.+++.++++|+||++|+++|++++..+|+++++|.++|+.++|+
T Consensus 261 -~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~~~i~~~l~~~~~v 339 (953)
T PRK11929 261 -LLTGYALQGSPADVHAYDLQATAHGQVFTLALPDGEAQIVTGLLGRHNISNLLLVAGALSKLGWPLPQIARELAAVSPV 339 (953)
T ss_pred -CEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf -5899933678774899999982898689999789279998068631249999999999998399999999988617998
Q ss_pred CCCCCCCEECCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 443310100036-5311331000256532101257778741110268713885123541710589999999999864998
Q gi|254781101|r 324 EGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472)
Q Consensus 324 ~GR~~~~~~~~~-~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472)
|||||++..... .+...+|| |-++|+|++.+|++++.+. +..+|.|+||| +|.++++..|.++..++....|
T Consensus 340 pGRmE~v~~~~~~~~~~viVD--YAHTpdAl~~~L~~lr~~~-~~~~rli~VfG----cgGdRD~~KRp~Mg~iA~~~aD 412 (953)
T PRK11929 340 DGRLERVGPTASAQGPLVVVD--YAHTPDALARALTALRPVA-EANGRLVCVFG----CGGNRDKGKRPEMGRIAAELAD 412 (953)
T ss_pred CCCEEEEECCCCCCCCEEEEE--CCCCHHHHHHHHHHHHHHH-CCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCC
T ss_conf 887599615666789669998--6789899999999999761-46980999989----8787761034899999998499
Q ss_pred EEEEECC-----CHHHHHH----HCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECC
Q ss_conf 9999880-----3898998----511379799978989999999984478989999--771
Q gi|254781101|r 403 HVWLSGF-----HVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472)
Q Consensus 403 ~v~~~G~-----~~~~~~~----~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472)
.||+.-+ +...+.+ .+....++....++++|++++...+.+||+||| ||.
T Consensus 413 ~viiT~DNPR~Edp~~I~~dI~~g~~~~~~~~~i~dR~~AI~~ai~~a~~~D~vliaGKGh 473 (953)
T PRK11929 413 RVIVTSDNPRDEAPEDIIDQILAGIPAGARALRQSDRALAIMQAIWMAKPGDVILLAGKGH 473 (953)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8998689989999999999998565668866997799999999998479999899987686
No 8
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=568.76 Aligned_cols=419 Identities=26% Similarity=0.314 Sum_probs=337.4
Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCCCEEEECCH-HHHHHHHHHH
Q ss_conf 71474677402223789888971688747688899999869889998552124554-469728995998-9999999999
Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV-LGALNKLAVA 101 (472)
Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~-~~~~~~i~v~d~-~~al~~la~~ 101 (472)
+..|++++.|||+|+||++|||++|.++|||+||++|+++||.++|+|++.. ... ..++|+|.|+|. +.++..+|..
T Consensus 1 ~~~~~~l~~~S~~V~~G~~F~A~~G~~~DG~~fi~~A~~~GA~aVv~e~~~~-~~~~~~~V~~i~~~d~~r~~~~~~A~~ 79 (494)
T TIGR01085 1 DLEVTGLTLDSREVKPGDLFVAIKGTKVDGHDFIEEAIENGAVAVVVEREVD-YVAGRAGVPVIIVPDLKRHALSSLAAA 79 (494)
T ss_pred CCEEECCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 9603110013001279967897125655848889999872988999806011-276434610799623135888999999
Q ss_pred HHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---CCHHH--H-HCCCC------CCC--H----HCCC-CCCC
Q ss_conf 98306--9939998303654201233467777520112---22122--1-10145------741--0----0012-3221
Q gi|254781101|r 102 ARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGS--Y-NNHIG------VPL--T----LARM-PVDV 160 (472)
Q Consensus 102 ~~~~~--~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~---~t~gn--~-Nn~iG------vpl--t----ll~~-~~~~ 160 (472)
++..+ +.+|||||||||||||+.|++++|+..|+.. +|.|+ + |+.|. .|- + |-+| +.++
T Consensus 80 fY~~Ps~~l~viGvTGTNGKTtt~~li~~~l~~~G~~tgliGT~g~~~~g~~~~~~~~~~TTP~~~~~q~~L~~~~~~g~ 159 (494)
T TIGR01085 80 FYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLELLGKKTGLIGTIGYRLGGNELIKDPASLTTPEALTLQKTLAEMVEAGA 159 (494)
T ss_pred HHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 73485525168999712874489999999998679708998654530477631266555679971899999999996599
Q ss_pred HHHHHCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC------CCHHHHCCCCHHH
Q ss_conf 4443015664433211--2122323220255531210123444578888654331037622------1012101342468
Q gi|254781101|r 161 DFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TGTIFLNYDDSFF 232 (472)
Q Consensus 161 ~~~V~E~g~~~~gei~--~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~------~g~~ViN~Dd~~~ 232 (472)
+|+|||+| ||.-... |+.. ++++++|||||+.||||||||||+|+.+|++||+.... -+.+|+|.||++.
T Consensus 160 ~~~v~EvS-SHaL~q~TARV~~-~~F~~~vFTNl~~DHLDfHgtmEnY~~aK~~LF~~~~~~~~~~~~~~aV~n~dD~~~ 237 (494)
T TIGR01085 160 QYAVMEVS-SHALAQGTARVEG-VDFDAAVFTNLTRDHLDFHGTMENYFAAKAKLFTELGLKSDRRRARFAVINLDDEYG 237 (494)
T ss_pred CEEEEEEE-HHHHHCCCCEEEC-CEEEEEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHH
T ss_conf 79999863-0124214211102-115799960788302340334899999998524400136775356611588645446
Q ss_pred HHHHHHCCCCCCCCCCC-CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHC-
Q ss_conf 99875201233333222-222--222222234421134651001245654-3221222222223333221035676510-
Q gi|254781101|r 233 ELLKAKSHALGIKTIYS-FGK--SKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT- 307 (472)
Q Consensus 233 ~~l~~~~~~~~~~~i~~-~g~--~~~ad~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lG- 307 (472)
..+..+......-.... ... ....|+...+......+..+.+..+++ .+.+.+|++|+||++|+|||++++..+|
T Consensus 238 ~~f~~~~~~~~~~~~~~~~A~~R~~~~~~~~~~~~~~~~G~~~~~~~~~g~~~~~~~~LiG~FNv~N~lAa~a~~~~~gg 317 (494)
T TIGR01085 238 AQFVKRLPKDITVSAITQKADWRGKAQDIKITDSGYSFEGQSFTFETPAGVEFKLHTPLIGRFNVYNLLAALATLLHLGG 317 (494)
T ss_pred HHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99986102522577885042126311240110000103456667524675206887536136889999999999997338
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCCCEEEECCHHHCCCCHH
Q ss_conf 121034554311476644331010003653113310002565321012577787411-1026871388512354171058
Q gi|254781101|r 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQ 386 (472)
Q Consensus 308 i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~-~~~~~r~i~VlG~m~ELG~~~~ 386 (472)
+++++|.+.|+.|+|++||||++.... .+..+||| |-|+|+||+.+|.+|+.+. ....+|+|+||| +|.+++
T Consensus 318 ~~~~~~~~~l~~~~gv~GRmE~v~~~~-~~f~V~VD--YAHTPDaLek~L~~lr~~~~~~~~g~L~~vFG----cGGdRD 390 (494)
T TIGR01085 318 IDLEDIVAALEKLRGVPGRMELVDGGQ-QKFLVIVD--YAHTPDALEKVLRTLRAIKLKHKKGRLIVVFG----CGGDRD 390 (494)
T ss_pred CCHHHHHHHHHHCCCCCCCCEEECCCC-CCCEEEEE--ECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE----CCCCCC
T ss_conf 889999989873489987312302789-99607997--14880589999999999984258982799981----578998
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-----HH----HHHHHCCCCCC---EEEECCHHHHHHHHHHHCCCCCEEEE--ECC
Q ss_conf 999999999986499899998803-----89----89985113797---99978989999999984478989999--771
Q gi|254781101|r 387 SFHIDLAEVLSLYNISHVWLSGFH-----VL----ALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472)
Q Consensus 387 ~~h~~i~~~~~~~~~d~v~~~G~~-----~~----~~~~~~~~~~~---~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472)
+..|.++..++....|.+|+.-++ .. .|..++..... +....|+.+|++++.+.+++||+||| ||=
T Consensus 391 r~KRplMG~iA~~~AD~~ilT~DNPR~Edp~~I~~Di~~G~~~~~~~~~~~~i~DR~~AI~~Ai~~A~~gD~VLiAGKGH 470 (494)
T TIGR01085 391 RGKRPLMGAIAEQLADLIILTSDNPRSEDPEQIIADILAGISEKEKDKDVVIIADRRQAIRKAISNAKAGDVVLIAGKGH 470 (494)
T ss_pred CCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 44575899999982986898368854579799999999714776667515896017899999998404798899961577
No 9
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=424.84 Aligned_cols=408 Identities=24% Similarity=0.292 Sum_probs=316.7
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC-
Q ss_conf 4677402223789888971688747688899999869889998552124554469728995998999999999998306-
Q gi|254781101|r 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106 (472)
Q Consensus 28 ~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~- 106 (472)
+++++|||++++|++|+|++|.++|||+|+.+|+++|+.+++++.+. .......|++.|.|++.++..+|..++..+
T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps 88 (475)
T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPS 88 (475)
T ss_pred CCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEEECCCC--CCCCCCCCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 57622365637684799973235245344065762897799970555--5545678779986853777888998523865
Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCC--CC--------CC--H---HCC--CCCCCHHHHHCCC
Q ss_conf -99399983036542012334677775201122212211014--57--------41--0---001--2322144430156
Q gi|254781101|r 107 -KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GV--------PL--T---LAR--MPVDVDFGIFELG 168 (472)
Q Consensus 107 -~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~i--Gv--------pl--t---ll~--~~~~~~~~V~E~g 168 (472)
+.++||||||||||||++|++++++..|+..+..|.-.+++ |. |- . +++ +++..+++++|++
T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 78518986387857999999999988629825899977663268863456678921789999999999738809998850
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 64433211212232322025553121012344457888865433103762210121013424689987520123333322
Q gi|254781101|r 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 (472)
Q Consensus 169 ~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~ 248 (472)
||.....++. -+..+++++||+++||||+|+++|+|..+|..+|+.+++.+.+|+|.||++...+......... ..+
T Consensus 169 -sh~l~~~Rv~-~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~-~~~ 245 (475)
T COG0769 169 -SHGLVQGRVE-GVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALG-DYI 245 (475)
T ss_pred -HHHHHHCCCC-CCEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCC-CEE
T ss_conf -3479757865-6359886456656666523574999998898776405788747987788038889999985688-789
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 2222222222234-421134651001245654322122222222333322103567651012103455431147664433
Q gi|254781101|r 249 SFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 (472)
Q Consensus 249 ~~g~~~~ad~~~~-~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~ 327 (472)
++|.+.+...... .++....+..+.+...+....+.+|++|.||++|+|+|++++..+|+|+++|.++++++++++|||
T Consensus 246 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v~GRm 325 (475)
T COG0769 246 TYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETLKPVPGRM 325 (475)
T ss_pred EECCCCCCCCHHHCCCEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 96889963121222611421354058863787326860412277899999999999874999999999997468999860
Q ss_pred CCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10100036531133100025653210125777874111026871388512354171058999999999986499899998
Q gi|254781101|r 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 (472)
Q Consensus 328 ~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~ 407 (472)
+++... +...+|| |-+||+|++++|++++.+ ..+|.|+|+|. |.+.+.-.+.++..++....|.+++.
T Consensus 326 E~v~~~---~~~v~VD--yAHnPd~le~~L~~~~~~---~~g~li~VfG~----gGDrD~~kr~~mg~ia~~~ad~vivt 393 (475)
T COG0769 326 ELVNIG---GKLVIVD--YAHNPDGLEKALRAVRLH---AAGRLIVVFGC----GGDRDKSKRPDMGAIAEQLADIVIVT 393 (475)
T ss_pred EEECCC---CCEEEEE--ECCCHHHHHHHHHHHHHH---CCCCEEEEECC----CCCCCCCCCHHHHHHHHHCCCCEEEC
T ss_conf 687389---9769999--534869999999998753---49848999776----68875343031599998559936991
Q ss_pred C-----CCHHHHHHHC----CCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8-----0389899851----1379799978989999999984478989999771
Q gi|254781101|r 408 G-----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472)
Q Consensus 408 G-----~~~~~~~~~~----~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472)
- ++...+.+.+ ....++....++++|+..+.+.++++|+|++-|.
T Consensus 394 ~dnpR~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagk 447 (475)
T COG0769 394 SDNPRSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGK 447 (475)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 899887688999999983647664143011099999999986324887899642
No 10
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=0 Score=403.92 Aligned_cols=369 Identities=27% Similarity=0.366 Sum_probs=275.3
Q ss_pred CCCEEEEECCCCCCC------CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 698899985521245------54469728995998999999999998306993999830365420123346777752011
Q gi|254781101|r 63 KGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 63 ~Ga~~~i~~~~~~~~------~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~ 136 (472)
.++-.+|++--..+. ....++|++.- + +.|..+ . ...++||||||||||||+.|++++|+..|..
T Consensus 66 ~~~d~vV~Sp~I~~~~p~~~~a~~~gi~v~~~--~-e~l~~~---~---~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~ 136 (459)
T PRK00421 66 KGADVVVVSSAIKPDNPELVAARELGIPVVRR--A-EMLAEL---M---RLRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 136 (459)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEH--H-HHHHHH---H---HCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999998998599899999999879979889--9-999999---8---2596499977888611899999999976998
Q ss_pred --CCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf --222122110145741000123221444301566443321121223232202555312101234445788886543310
Q gi|254781101|r 137 --YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 (472)
Q Consensus 137 --~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~ 214 (472)
+...|+.++ +|.+ ..+ ++.+|+|+|+.-+. + .+ .-++|+++|||||++||||+|+|+|+|+++|.+++
T Consensus 137 ~~~~iGg~~~~-~~~~---~~~-~~~~~~V~E~dE~d-~--sf--~~~~P~iavitNI~~DHLD~h~s~e~Y~~ak~~~~ 206 (459)
T PRK00421 137 PTFIIGGILNA-AGTN---ARL-GSSDYFVAEADESD-R--SF--LKLHPDIAVVTNIDADHLDYYGDFEDLKDAFQEFA 206 (459)
T ss_pred CEEEECCCCCC-CCCC---CCC-CCCCEEEEEECCCC-C--CH--HHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf 74885753355-6654---525-88988999953541-4--36--44589899991798778656018999999999999
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 3762210121013424689987520123333322222222222223442113465100124565432-212222222233
Q gi|254781101|r 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293 (472)
Q Consensus 215 ~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv 293 (472)
+.++++|.+|+|.||++...+...... .+++||.++++|+++.++.....+..|.+...+... .+.++++|.||+
T Consensus 207 ~~~~~~g~~ViN~DD~~~~~l~~~~~~----~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~l~G~HNv 282 (459)
T PRK00421 207 HNLPFYGALVACGDDPELRELLPRVDR----PVITYGFSEDADFRAENIRQDGGGSHFDVLREGEDLGDFTLPLPGRHNV 282 (459)
T ss_pred HCCCCCCCEECCCCCHHHHHHHHHCCC----CCEEECCCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEECCCHHHHH
T ss_conf 719954721146879899998774388----6002356876666788899948923899983893788999568638899
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 33221035676510121034554311476644331010003653113310002565321012577787411102687138
Q gi|254781101|r 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472)
Q Consensus 294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472)
+|+++|+++|..+|++++.|.++|++|++++||+|.. ...+++++||| |+|||++++++|++++...+ .+|.|+
T Consensus 283 ~NalAAia~a~~lGi~~e~i~~aL~~F~Gv~~R~E~v---~~~~gv~~idD-YAH~P~~i~a~l~alr~~~~--~~rii~ 356 (459)
T PRK00421 283 LNALAAIAVALELGIDDEAIRKALATFKGVKRRFEEK---GEVNGVVLIDD-YAHHPTEIKATLKAARQKYP--DKRIVA 356 (459)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EECCCEEEEEE-CCCCHHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 9999999999984999999999997535745027998---72288479973-56893899999999998768--996699
Q ss_pred EECCHHHCCC--CHHHHHHHHHHHHHHCCCCEEEEE-----------CCCHHHHHHHCCCC--CCEEEECCHHHHHHHHH
Q ss_conf 8512354171--058999999999986499899998-----------80389899851137--97999789899999999
Q gi|254781101|r 374 VLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQ 438 (472)
Q Consensus 374 VlG~m~ELG~--~~~~~h~~i~~~~~~~~~d~v~~~-----------G~~~~~~~~~~~~~--~~~~~~~~~e~a~~~l~ 438 (472)
|+.- .. +...+..++++.+. .+|.|++. |...+.+.+++... .++.++++.+++++.+.
T Consensus 357 vfqP----h~~sR~~~~~~e~a~~l~--~aD~vil~~iy~a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~~ai~~~~ 430 (459)
T PRK00421 357 VFQP----HRYSRTRDLFDEFAEVLS--DADEVILLDIYAAGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVDDLAELLA 430 (459)
T ss_pred EECC----CCHHHHHHHHHHHHHHHH--CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 9867----420548999999999987--1999998887588887657889999999998608988799699999999999
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 844789899997713254899999999850
Q gi|254781101|r 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 439 ~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
+.+++||+||++|... +.++.+.|.+.+
T Consensus 431 ~~a~~gDvVL~~GaGd--~~~~~~~l~~~l 458 (459)
T PRK00421 431 DVLQPGDLVLTMGAGD--ITKLARALLELL 458 (459)
T ss_pred HHCCCCCEEEEECCCC--HHHHHHHHHHHH
T ss_conf 8589989999979999--899999999965
No 11
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=400.87 Aligned_cols=330 Identities=23% Similarity=0.271 Sum_probs=257.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
..+.|+||||||||||||++|+++||+..|......|| ||+|+.-+ +.++.+++|+|++..+. +. +.-++|
T Consensus 106 ~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~~~~VlElSSfqL---~~-~~~~~p 176 (448)
T PRK03803 106 AAKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGN----LGTPALDL-LSDDVELYVLELSSFQL---ET-TDQLNA 176 (448)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----CCCHHHHH-HCCCCCEEEEECCCCHH---HC-CCCCCC
T ss_conf 17898899858998388999999999865983799403----27613665-25888789998664112---03-545686
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20255531210123444578888654331037622101210134246899875201233333222222222222234421
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~ 264 (472)
+++|||||++||||||+|+|+|.++|.+||++.+. +|+|.||+....+.... ...++|+.+.. ++....+.
T Consensus 177 ~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~~~---~v~n~Dd~~~~~l~~~~-----~~~~~f~~~~~-~~~~~~~~ 247 (448)
T PRK03803 177 EVATVLNISEDHLDRHGGMLAYHQAKHRIFRGAKQ---VVVNRDDALTRPLVADG-----TPCWSFGLNAP-DFGAFGLR 247 (448)
T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHCC-----CCEEEEECCCC-CCCCCCEE
T ss_conf 28998358753654633899999998777538878---99958608888886548-----85799835776-51223169
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE
Q ss_conf 13465100124565432212222222233332210356765101210345543114766443310100036531133100
Q gi|254781101|r 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472)
.......+............++++|.||++|+++|++++..+|++.+.|.++|++|+++|+|+|.+ ...+|+.+|||
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~Gl~hR~E~v---~~~~Gv~fiND 324 (448)
T PRK03803 248 EEDGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKGLEHRCQWV---REVDGVRYYND 324 (448)
T ss_pred ECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EECCCEEEEEC
T ss_conf 539839996165321433330767623599899999999982998789899886355712057999---96188899968
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCE
Q ss_conf 02565321012577787411102687138851235417105899999999998649989999880389899851137979
Q gi|254781101|r 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 (472)
Q Consensus 345 sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~ 424 (472)
|...||+|+.+||+.+... ..++.|+|+| |......+.++.+.+.+. +..++++|+....+.+.+....++
T Consensus 325 SKaTN~~at~~Al~~~~~~---~~~~iilI~G-----G~~K~~d~~~l~~~~~~~-v~~v~l~G~~~~~i~~~l~~~~~~ 395 (448)
T PRK03803 325 SKGTNVGATLAAIEGLGAD---IEGKLVLIAG-----GQGKGADFSELREPVAKY-CRAVVLIGRDAELIEQALGDAVPL 395 (448)
T ss_pred CCCCCHHHHHHHHHHHHHH---CCCCEEEEEC-----CCCCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHHCCCCCE
T ss_conf 9989978999999964652---3686899937-----866666879999999736-609999795999999975068987
Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 99789899999999844789899997---71---------325489999999
Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
..++++++|+..+.+.+++||+||+. .| ||..|.++|+.|
T Consensus 396 ~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L 447 (448)
T PRK03803 396 VRAATLEEAVTQAAELAQPGDAVLLSPACASLDMFKNFEERGRQFAQAVEGL 447 (448)
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9949999999999985789898998974402013179999999999999975
No 12
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=402.16 Aligned_cols=324 Identities=23% Similarity=0.212 Sum_probs=252.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHC-CCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6993999830365420123346777752011222122110145741000-123221444301566443321121223232
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll-~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
.+.++||||||||||||++|++++|+..|......|| ||.|++-+ .-....+|+|+|++..+ ++. +.-++|
T Consensus 110 ~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~d~~VlE~SSfq---l~~-~~~~~p 181 (450)
T PRK02472 110 SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLAGN----IGYPASEVAQKATADDTLVTELSSFQ---LMG-VETFRP 181 (450)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHCCCCCCEEEEEECCCC---HHH-HCCCCC
T ss_conf 1597899827999731999999999974997399941----67641245544789877999906551---410-022588
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 2025553121012344457888865433103762210121013424689987520123333322222222222-223442
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKW 263 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad-~~~~~i 263 (472)
+++|||||++||||||+|+|+|+++|.+||+++++++.+|+|.||+....+...... .+++|+.....+ .++.+
T Consensus 182 ~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~v~n~Dd~~~~~l~~~~~~----~~i~fs~~~~~~~~~~~~- 256 (450)
T PRK02472 182 HIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQTEDDYLVLNADQEEVKELAKQTKA----TVVPFSTTKEVDGAYIKD- 256 (450)
T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----EEEEECCCCCCCCCEEEC-
T ss_conf 689993688779766348999999999999559968779995887999999975797----089853675466517627-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE
Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472)
+ .+.+..........++++|.||++|+++|+++|..+|++.+.|.++|++|+++|+|+|.+ ...+|+.+||
T Consensus 257 ----~--~~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~i~~aL~~F~Gl~hRlE~v---~~~~Gv~~iN 327 (450)
T PRK02472 257 ----G--ALYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEAIAEVLSTFTGVKHRLQYV---GTINGRKFYN 327 (450)
T ss_pred ----C--EEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EEECCEEEEE
T ss_conf ----8--799888456642323677553499999999999982998789999987448843379999---9974778982
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC-CC
Q ss_conf 00256532101257778741110268713885123541710589999999999864998999988038989985113-79
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-~~ 422 (472)
||...||+|+.+||+++. .+.++|+|+ ........++.+.+. +++.++++|+....+.+.+.. +.
T Consensus 328 DSKaTN~~at~~Al~~~~-------~~iilI~GG-----~~Kg~d~~~l~~~~~--~vk~v~~~G~~~~~i~~~~~~~~~ 393 (450)
T PRK02472 328 DSKATNILATQKALSGFN-------QPVILLAGG-----LDRGNEFDELIPYLK--NVKAMVVFGETAPKLARAANKAGI 393 (450)
T ss_pred CCCCCCHHHHHHHHHCCC-------CCEEEEEEC-----CCCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHCCC
T ss_conf 688889999999984589-------987999915-----556888799999973--768999968899999999973797
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf 7999789899999999844789899997---71---------3254899999999
Q gi|254781101|r 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472)
Q Consensus 423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472)
.+..++++++|++.+.+.+++||+||+. .| ||..|.++|+.|+
T Consensus 394 ~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L~ 448 (450)
T PRK02472 394 TIVEADNVEDAVPKAYALSEPGDVILLSPACASWDQYKTFEERGDEFIDAVHELK 448 (450)
T ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1898799999999999858895989979733050120599999999999999747
No 13
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=402.01 Aligned_cols=336 Identities=18% Similarity=0.242 Sum_probs=258.9
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99830699399983036542012334677775201122212211014574100012322144430156644332112122
Q gi|254781101|r 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 (472)
Q Consensus 101 ~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472)
+++.....|+||||||||||||++|+++||+..|......|| ||+|+ +.+..+.+++|+|++..+ ++ .++
T Consensus 97 ~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~d~~VlElSSfQ---l~-~~~ 166 (450)
T PRK01368 97 LFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN----IGVPA--LQAKASKDGYVLELSSFQ---LD-LVK 166 (450)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC----CCHHH--HHCCCCCCEEEEEECCCC---HH-CCC
T ss_conf 997667997799968999748999999999975996289625----56366--525268975999935652---20-363
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32322025553121012344457888865433103762210121013424689987520123333322222222222223
Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 (472)
Q Consensus 181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~ 260 (472)
-++|++||||||++||||||+|+|+|+++|.+||+++++++.+|+|.||++...+...........+++|+.....+..
T Consensus 167 ~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~f~~~~~~~~g- 245 (450)
T PRK01368 167 TFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENG- 245 (450)
T ss_pred CCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-
T ss_conf 4798789994688779877268789999999999658988889997874889999986300455169740345324477-
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf 4421134651001245-654322122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r 261 RKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472)
Q Consensus 261 ~~i~~~~~~~~~~~~~-~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472)
+....+........ ......+..+++|.||++|++||+++|..+|++.+.|.++|++|+++|+|+|.+ ...+++
T Consensus 246 --~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V---~~~~gv 320 (450)
T PRK01368 246 --ISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYI---GSINNI 320 (450)
T ss_pred --EEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEE---EEECCE
T ss_conf --488547335520155330045211357565899999999999980997777787642467700146899---998999
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472)
Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472)
.+||||...||+|+.+||+++. +.++|+|+ ........++...+. .+..++++|+....+.+.++
T Consensus 321 ~~iNDSKaTN~~a~~~Al~~~~--------~i~lI~GG-----~~K~~d~~~l~~~~~--~v~~~~l~G~~~~~~~~~~~ 385 (450)
T PRK01368 321 SFYNDSKATNAISAVQSIKALD--------NIYWLAGG-----IPKEGGIEEIKPYFS--KIKKAYFYGQAKEMFANTAK 385 (450)
T ss_pred EEECCCCCCCHHHHHHHHHCCC--------CEEEEEEC-----CCCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHCC
T ss_conf 9971788789999999985689--------73999941-----577788799998874--38799998978999998605
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCE----EEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf 379799978989999999984478989----9997---71---------325489999999985
Q gi|254781101|r 420 RSIHVHYSETMDGLFLFIQSSLVDGDV----VVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 420 ~~~~~~~~~~~e~a~~~l~~~~~~gdi----VLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
....+..++++++++..+...+.++|. ||+. .| ||..|-++|+.|.++
T Consensus 386 ~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLlSPacaSfD~f~nye~RG~~F~~lv~~L~~~ 449 (450)
T PRK01368 386 NIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIKLSSILILE 449 (450)
T ss_pred CCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8987696499999999999997557878997996860204013179999999999999998755
No 14
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=391.97 Aligned_cols=355 Identities=21% Similarity=0.226 Sum_probs=257.1
Q ss_pred CCCEEEECCHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HC----C
Q ss_conf 9728995998999999999998-3069939998303654201233467777520112221221101457410-00----1
Q gi|254781101|r 82 SIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LA----R 155 (472)
Q Consensus 82 ~~~~i~v~d~~~al~~la~~~~-~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll----~ 155 (472)
++|++ .|..-+.+.+..... ..+.+++||||||||||||+.|++++|+..|......|| ||.|.. .+ .
T Consensus 97 gi~i~--~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GN----IG~p~l~~l~~~~~ 170 (501)
T PRK02006 97 GIPVW--GELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGN----ISPAALDKLAEAID 170 (501)
T ss_pred CCCEE--EHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHHHHHC
T ss_conf 99587--6899999887630222356874899938996687999999999976997465256----46102677876422
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHH
Q ss_conf 23221444301566443321121223232202555312101234445788886543310376221012101342468998
Q gi|254781101|r 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 (472)
Q Consensus 156 ~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l 235 (472)
.....+++|+|++..+ ++. +.-++|+++|||||++||||||+|+|+|+++|.+||. +.+.+|+|.||+....+
T Consensus 171 ~~~~~d~~VlElSSfQ---Le~-~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~rif~---~~~~~V~n~DD~~~~~~ 243 (501)
T PRK02006 171 AAALPDVWVLELSSFQ---LET-THTFAPDAATVLNITQDHLDWHGSMAAYAAAKGRIFG---PATVRVLNRDDALVMAM 243 (501)
T ss_pred CCCCCCEEEEEECHHH---HCC-CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHH
T ss_conf 5776868999966467---575-6557967899907886564442379999999998723---48559994888889987
Q ss_pred HHHCCCCCCCCCCCCCCCCC---CCCCCCCCC---------CCCC-CCCCCC--------CCCC----CCC-CCCCCCCC
Q ss_conf 75201233333222222222---222234421---------1346-510012--------4565----432-21222222
Q gi|254781101|r 236 KAKSHALGIKTIYSFGKSKN---ADFQLRKWK---------QCSE-QSWMEV--------QLQG----KSM-EVVHHGIG 289 (472)
Q Consensus 236 ~~~~~~~~~~~i~~~g~~~~---ad~~~~~i~---------~~~~-~~~~~~--------~~~~----~~~-~~~l~~~G 289 (472)
....... ...++||.+.. .++...... .... ...... .... ... .-.+++.|
T Consensus 244 ~~~~~~~--~~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~l~G 321 (501)
T PRK02006 244 APPAAAA--DAPVTFGLDEPAQDGDYGLLRENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLMPADALRIRG 321 (501)
T ss_pred HHHCCCC--CEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCC
T ss_conf 6650566--41688505775666540256237705787303221000000122102333444331011035520103567
Q ss_pred CCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 22333322103567651012103455431147664433101000365311331000256532101257778741110268
Q gi|254781101|r 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 (472)
Q Consensus 290 ~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~ 369 (472)
.||++|++||+++|..+|++.+.|.++|++|+++|+|+|.+ ...+++.+||||...||+|+.+||+++. +
T Consensus 322 ~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V---~~~~gv~~iNDSKaTN~~at~~Al~s~~-------~ 391 (501)
T PRK02006 322 LHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVI---ATIDDVDYVDDSKGTNVGATVAALDGLA-------Q 391 (501)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEE---EEECCEEEECCCCCCCHHHHHHHHHHCC-------C
T ss_conf 20699999999999985998789876631557876525899---9967889973787789899999997078-------9
Q ss_pred CCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC-CCEEEECCHHHHHHHHHHHCCCCCEEE
Q ss_conf 7138851235417105899999999998649989999880389899851137-979997898999999998447898999
Q gi|254781101|r 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 (472)
Q Consensus 370 r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-~~~~~~~~~e~a~~~l~~~~~~gdiVL 448 (472)
+.++|+|+ ......+.++.+.+.+. +..++++|+....+.+.+... ..+..++++++|+..+.+.+++||+||
T Consensus 392 ~iilI~GG-----~~K~~d~~~L~~~~~~~-~k~vil~G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VL 465 (501)
T PRK02006 392 RVVLIAGG-----DGKGQDFSPLAAPVARW-ARAVVLIGRDAPAIRAALADTGVPLVDAATLEEAVRAAAELAQPGDAVL 465 (501)
T ss_pred CEEEEEEC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 74999805-----77777979999999853-7099998989999999975179807985999999999997578979899
Q ss_pred EE---CC---------CHHHHHHHHHHHHHH
Q ss_conf 97---71---------325489999999985
Q gi|254781101|r 449 VK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 449 iK---GS---------r~~~le~iv~~L~~~ 467 (472)
+. .| ||..|.++|+.|..+
T Consensus 466 lSPacaSfD~F~nyeeRG~~F~~~V~~L~~~ 496 (501)
T PRK02006 466 LSPACASLDMFRNYAHRAQVFRAAVEELALD 496 (501)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8961103012069999999999999999985
No 15
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=392.94 Aligned_cols=322 Identities=19% Similarity=0.255 Sum_probs=241.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
...|+||||||||||||++|++++|+..|......|| ||.|+.-+......+++|+|++..+ ++. +.-++|+
T Consensus 112 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----IG~p~l~l~~~~~~~~~VlElSSfQ---l~~-~~~~~p~ 183 (457)
T PRK01390 112 PDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN----IGTAILSLEPPKAGRVYVVECSSYQ---IDL-TPSLDPT 183 (457)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHCCCCCCCCCCEEEEEECCCH---HHH-HHCCCCC
T ss_conf 7898899928996498999999999973998699666----2401112346889966999925752---654-4006998
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 0255531210123444578888654331037622101210134246899875201233333222222222--22223442
Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKW 263 (472)
Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~i 263 (472)
++|||||++||||||+|+|+|+++|.+||.+ .+.+|+|.||++...+......... .++.++.... ..++..+
T Consensus 184 iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~---~~~~Vin~DD~~~~~l~~~~~~~~~-~~~~~s~~~~~~~g~~~~~- 258 (457)
T PRK01390 184 VGILLNLTPDHLDRHGTMEHYAAIKERLVAG---AGTAVIGVDDAYCQAIADRLERAGK-RVVRISVEKPLARGIYADG- 258 (457)
T ss_pred EEEEECCCHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCEEEEC-
T ss_conf 8999178877865508999999999998557---9869996888889999999876388-4999716765668649857-
Q ss_pred CCCCCCCCCCCCCCCCCC---CC--CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 113465100124565432---21--2222222233332210356765101210345543114766443310100036531
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSM---EV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~---~~--~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~ 338 (472)
...+.. ..+... ++ ..+++|.||++|+++|+++|..+|++.+.|.++|++|+++|+|+|.+ ...+|
T Consensus 259 -----~~~~~~-~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~E~V---~~~~G 329 (457)
T PRK01390 259 -----GKLVRA-TGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRMEQV---GRRGK 329 (457)
T ss_pred -----CEEEEC-CCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EECCC
T ss_conf -----889984-798345443143234577542699999999999981898999999997489999852797---54278
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC
Q ss_conf 13310002565321012577787411102687138851235417105899999999998649989999880389899851
Q gi|254781101|r 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 (472)
Q Consensus 339 ~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~ 418 (472)
+++||||...||+|+.+||+++. +.++|+|+. .......++.+.+. .+..++++|+....+.+.+
T Consensus 330 v~~iNDSKaTN~~at~~Al~s~~--------~i~lI~GG~-----~K~~d~~~l~~~~~--~v~~~~liG~~~~~~~~~l 394 (457)
T PRK01390 330 VLFVNDSKATNADAAAPALSSFP--------NIYWIAGGK-----PKAGGIESLAPFFP--RIAKAYLIGEAAEEFAATL 394 (457)
T ss_pred CEEECCCCCCCHHHHHHHHHCCC--------CEEEEECCC-----CCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHH
T ss_conf 33853776789899999997378--------859994504-----78889799999874--3359999898889999987
Q ss_pred CCCCCEEEECCHHHHHHHHHHHC----CCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 13797999789899999999844----789899997---71---------325489999999
Q gi|254781101|r 419 PRSIHVHYSETMDGLFLFIQSSL----VDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 419 ~~~~~~~~~~~~e~a~~~l~~~~----~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
....+...++++++++..+.+.+ .+||+||+. .| ||..|.++|+.|
T Consensus 395 ~~~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~L 456 (457)
T PRK01390 395 GGAVPYEISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVQAL 456 (457)
T ss_pred HCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36798798598999999999999851899998997962404014269999999999999868
No 16
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=389.50 Aligned_cols=324 Identities=23% Similarity=0.284 Sum_probs=250.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCC---CCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3069939998303654201233467777520112221221101457410001---2322144430156644332112122
Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTH 180 (472)
Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~---~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472)
.+...++||||||||||||+.|++++|+..|......|| ||.|+.-.. ...+.+++|+|++..+ ++. +.
T Consensus 106 ~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~d~~VlElSSfq---l~~-~~ 177 (445)
T PRK04308 106 NRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGN----IGTPVLEAELQREGKKADVWVLELSSFQ---LEN-TE 177 (445)
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHHHCCCCCCEEEEEEECCC---CCC-CC
T ss_conf 416995799948998377999999999975996299850----3752111144432787867999960334---466-55
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32322025553121012344457888865433103762210121013424689987520123333322222222222223
Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 (472)
Q Consensus 181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~ 260 (472)
-++|+++|||||++||||||+|+|+|+++|.+||+ ..+.+|+|.||+....+.... ..+.+|+.+..+|+.+
T Consensus 178 ~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~---~~~~~vln~dd~~~~~~~~~~-----~~v~~~~~~~~~d~~~ 249 (445)
T PRK04308 178 SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWL 249 (445)
T ss_pred CCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCC---CCCEEEECCCCHHHHHHHHCC-----CCEEEEECCCCCCEEE
T ss_conf 43763899858985675453599999999997445---797799938719999998669-----9569981376563689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEE
Q ss_conf 44211346510012456543221222222223333221035676510121034554311476644331010003653113
Q gi|254781101|r 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 (472)
Q Consensus 261 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~ 340 (472)
... ...+............++++|.||++|+++|+++|..+|++.+.|.++|++|+++|+|+|.+ ...+|++
T Consensus 250 ~~~-----~~~~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v---~~~~GV~ 321 (445)
T PRK04308 250 ERE-----TGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKI---GEKNGVV 321 (445)
T ss_pred ECC-----CCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEE
T ss_conf 616-----63797468114543025667654798899999999982998899999987579999862899---8648988
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC
Q ss_conf 31000256532101257778741110268713885123541710589999999999864998999988038989985113
Q gi|254781101|r 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 (472)
Q Consensus 341 iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~ 420 (472)
+||||...||+|+.+||+++. ++.++|+| |........++.+.+.+. +..|+++|+....+.+.+..
T Consensus 322 ~iNDSKaTn~~at~~Al~~~~-------~~i~lI~G-----G~~Kg~d~~~l~~~~~~~-~~~v~~~G~~~~~i~~~l~~ 388 (445)
T PRK04308 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILG-----GMGKGQDFTPLRDALAGK-AKGVFLIGVDAPQIRRDLDG 388 (445)
T ss_pred EEECCCCCCHHHHHHHHHHCC-------CCEEEEEC-----CCCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHH
T ss_conf 980798888899999998277-------97799976-----766777869999998752-56999989799999998863
Q ss_pred -CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf -797999789899999999844789899997---71---------325489999999
Q gi|254781101|r 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 421 -~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
+..+..++++++|+..+.+.+++||+||+. .| ||..|.+.|++|
T Consensus 389 ~~~~~~~~~~l~~Av~~a~~~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~~L 445 (445)
T PRK04308 389 CGLNLTDCATLEEAVQTAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL 445 (445)
T ss_pred CCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 798558768799999999974889898998973404013079999999999999739
No 17
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=389.00 Aligned_cols=334 Identities=21% Similarity=0.211 Sum_probs=246.6
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCC-----CCCCCHHHHHCCCCCCCCCC
Q ss_conf 9983069939998303654201233467777520112221221101457410001-----23221444301566443321
Q gi|254781101|r 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEI 175 (472)
Q Consensus 101 ~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~-----~~~~~~~~V~E~g~~~~gei 175 (472)
+|+...+.++||||||||||||++|+++||+..|......|| ||.|++-+. -....||+|+|++..+ +
T Consensus 102 ~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GN----IG~p~~~~~l~~~~~~~~~d~~VlE~SSfQ---L 174 (459)
T PRK02705 102 AWRALKHIPWVGITGTNGKTTVTHLLAHILQAAGLNAPMCGN----IGYAACELALLRSGKAEKPDWIVAELSSYQ---I 174 (459)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECC----CCCCHHHHHHHCCCCCCCCCEEEEECCHHH---H
T ss_conf 999850497577717897278999999999983998536401----376204444213467887657999757133---1
Q ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 12122323220255531210123444578888654331037622101210134246899875201233333222222222
Q gi|254781101|r 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 (472)
Q Consensus 176 ~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ 255 (472)
+. +.-++|+++|||||++||||||+|+|+|+++|.+|++ ..+.+|+|.||+.+......... ..+.......
T Consensus 175 e~-~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~---~~~~~V~N~DD~~l~~~~~~~~~----~~~~~~~~~~ 246 (459)
T PRK02705 175 ES-SPELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLE---RSEIRILNGDDPYLRQGRSSWPK----GYWVSTQGKK 246 (459)
T ss_pred CC-CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHCCC----CEEEECCCCC
T ss_conf 33-6677877899966887787664217789999997506---59889993887999998764377----4799655641
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 2222344211346510012456543221-222222223333221035676510121034554311476644331010003
Q gi|254781101|r 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472)
Q Consensus 256 ad~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472)
.+..........++ +.....+..+.+ .++++|.||++|+++|+++|..+|++.+.|.++|++|+++|||+|.+ .
T Consensus 247 ~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~l~G~HN~~NalAAia~a~~lGi~~e~I~~aL~~F~GlpHRlE~V---~ 321 (459)
T PRK02705 247 SLLDQADFWIDQEG--WVVERGEPLFPLEALKMPGAHNLQNLLLAVAAARLAGLSAEAIAKALRSFPGVPHRLERI---G 321 (459)
T ss_pred CCCCCCCEEECCCC--EEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEE---E
T ss_conf 12111444882698--799778056540421687676899999999999985886366788875089999853898---7
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 65311331000256532101257778741110268713885123541710589999999999864998999988038989
Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 (472)
Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~ 414 (472)
..+|+.+||||...||+|+.+||+++. ++.|+|+|+ ........++.+.+.. .+..|+++|+....+
T Consensus 322 ~~~gV~fiNDSKaTN~~a~~~Al~~~~-------~~iilI~GG-----~~K~~d~~~l~~~~~~-~v~~v~~~G~~~~~i 388 (459)
T PRK02705 322 TINGIDFINDSKATNYDAAEVGLKAVP-------GPIILIAGG-----EAKQGDDSAWLKQIKA-KAAAVLLFGEAAPEL 388 (459)
T ss_pred ECCCEEEECCCCCCCHHHHHHHHHHCC-------CCEEEEECC-----CCCCCCHHHHHHHHHH-CCEEEEEECCCHHHH
T ss_conf 428878972787889899999998289-------986999567-----6667873999999864-061999989899999
Q ss_pred HHHCCCC---CCEEEECCHHHHHHHHHHHCCCCC--EEEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf 9851137---979997898999999998447898--99997---71---------325489999999985
Q gi|254781101|r 415 KDALPRS---IHVHYSETMDGLFLFIQSSLVDGD--VVVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 415 ~~~~~~~---~~~~~~~~~e~a~~~l~~~~~~gd--iVLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
.+.+... ..+..++++++|++.+.+.+.++| +||+. .| ||..|.++|+.|.+.
T Consensus 389 ~~~l~~~~~~~~~~~~~~l~~Av~~a~~~a~~~~~~~VLlSPacaSfD~f~nyeeRG~~F~~~V~~l~~~ 458 (459)
T PRK02705 389 AQLLQESGYTGEIEIVETLDEAVNRAFELAKELQAKSVLLSPACASFDQYQNFEERGDHFRQLIQELLKV 458 (459)
T ss_pred HHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999736998776985999999999999876589998996874401013279999999999999998616
No 18
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=386.59 Aligned_cols=333 Identities=23% Similarity=0.279 Sum_probs=247.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410-00123221444301566443321121223232
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
...|+||||||||||||++|+++||+..|......|| ||+|+. .+.-+.+.+++|+|++..+ ++. +.-++|
T Consensus 120 ~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~l~~~~~~~~~d~~V~ElSSfq---L~~-~~~~~p 191 (481)
T PRK01438 120 TPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGN----IGVPVLDAVRGPDGYDVLAVELSSFQ---LHW-APSVRP 191 (481)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHCCCCCCCEEEEECCCCC---CCC-CCCCCC
T ss_conf 8887899938997460999999999966997079962----56777764228888608999804765---133-445576
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 20255531210123444578888654331037622101210134246899875201233333222222222--2222344
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRK 262 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~ 262 (472)
+++|||||++||||||+|+|+|+++|.+||.+... .+|+|.||+....+............++|+.+.. .++...+
T Consensus 192 ~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~~~--~~v~n~dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~ 269 (481)
T PRK01438 192 HSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV--ACVYNVADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVD 269 (481)
T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE--EEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEC
T ss_conf 48997068777866523598999999998627851--4997057788999998602244770788735888712012103
Q ss_pred CCCCCCCCCCCCCC-CC-CCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE
Q ss_conf 21134651001245-65-432-2122222222333322103567651012103455431147664433101000365311
Q gi|254781101|r 263 WKQCSEQSWMEVQL-QG-KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472)
Q Consensus 263 i~~~~~~~~~~~~~-~~-~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472)
....+. ..+.-.. .. ... .-.++++|.||++|+++|++++..+|++.+.|.++|++|+++|+|+|.+ ...+|+
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~aL~~F~Gl~hR~E~v---~~~~GV 345 (481)
T PRK01438 270 GILVDR-AFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDGLRAFRPDAHRIEHV---ADADGV 345 (481)
T ss_pred CEEEEC-EEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE---EEECCE
T ss_conf 455302-0343023453000106640676576999999999999982998899998886348977337899---999999
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511
Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472)
Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472)
.+||||+..||+|+.+||+++. ..++|+|+ ........++.+.+.. .+..++++|+....+.+.+.
T Consensus 346 ~fiNDSKaTN~~A~~~AL~~~~--------~i~lI~GG-----~~Kg~d~~~l~~~~~~-~vk~~~l~G~~~~~i~~~~~ 411 (481)
T PRK01438 346 TYVDDSKATNPHAAEASLAAYP--------SVVWIAGG-----LAKGAHFDDLVRAHAA-RLRGVVLIGADRALIREALA 411 (481)
T ss_pred EEECCCCCCCHHHHHHHHHHCC--------CEEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHH
T ss_conf 9980688789889999987249--------88999378-----6578898999999860-13399997789999999997
Q ss_pred CCC---CEE-----EECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHH
Q ss_conf 379---799-----9789899999999844789899997---71---------32548999999998
Q gi|254781101|r 420 RSI---HVH-----YSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466 (472)
Q Consensus 420 ~~~---~~~-----~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~ 466 (472)
... .+. ..+++++|++.+.+..++||+||+. .| ||..|.++|++|..
T Consensus 412 ~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~l~g 478 (481)
T PRK01438 412 RHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLLAPACASMDMFTNYAERGEAFAAAVRHLLG 478 (481)
T ss_pred HCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 2289874577310237899999999996389989899895000202206999999999999997237
No 19
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=388.29 Aligned_cols=322 Identities=20% Similarity=0.242 Sum_probs=245.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410-00123221444301566443321121223232
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
.+.++||||||||||||++|++++|+..|......|| ||.|+. .+.-..+.+++|+|++..+ +..+ + ++|
T Consensus 115 ~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGN----iG~p~~~~~~~~~~~d~~V~E~SS~q---l~~~-~-~~P 185 (458)
T PRK01710 115 CPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGN----IGTPLFSNIEEIKEEDKVVLELSSFQ---LMTM-D-VSP 185 (458)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHHHCCCCCEEEEEECHHH---HHHC-C-CCC
T ss_conf 7587799936898478999999999984997585166----26446888850578866999932155---5305-4-688
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 202555312101234445788886543310376221012101342468998752012333332222222222--222344
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRK 262 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a--d~~~~~ 262 (472)
+++|||||++||||||+|+|+|+++|.+||+++++++.+|+|.||+....+...... .+++|+.+... +.+..+
T Consensus 186 ~iaVitNi~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~i~n~Dd~~~~~~~~~~~~----~~~~f~~~~~~~~~~~~~~ 261 (458)
T PRK01710 186 EVAVVTNLSPNHLDVHKDMEEYVDAKKNIFKYQSSNDLLVLNKDNEITNGMEKEAKG----DVVKFSRKEKLKEGAYYKD 261 (458)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----CEEEECCCCCCCCCCEEEC
T ss_conf 789983588536506541999999999999638877379993786999998776368----7899536654566736766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf 21134651001245654322122222222333322103567651012103455431147664433101000365311331
Q gi|254781101|r 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472)
Q Consensus 263 i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472)
. ...+..........++++|.||++|++||++++. +|++.+.|.++|++|+++|+|+|.+ ...+++++|
T Consensus 262 -----~--~~~~~~~~~~~~~~l~l~G~HN~~N~lAA~aa~~-~gi~~e~i~~aL~~F~Gl~hR~E~v---~~~~gv~~i 330 (458)
T PRK01710 262 -----G--KLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN-DDVSIESMKKVATTFTGVEHRCEFV---REINGVKYY 330 (458)
T ss_pred -----C--EEEECCCEECCHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHHHEEE---EEECCEEEE
T ss_conf -----8--8998784011324216776544999999999998-1999999999987543534231465---787476798
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC--
Q ss_conf 000256532101257778741110268713885123541710589999999999864998999988038989985113--
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-- 420 (472)
|||+..||+|+.+||+++. ++.++|+|+ ........++.+.+.+ .+..++++|+....+.+.+.+
T Consensus 331 NDSkaTn~~s~~~AL~~~~-------~~iilI~GG-----~~K~~d~~~l~~~~~~-~~k~vi~~G~~~~~i~~~l~~~~ 397 (458)
T PRK01710 331 NDSIASSPTRTLAGLNAFE-------KPVILIAGG-----YDKKIPFEPLAEEGYE-KIKILILMGDTKNKIKEAFKKVE 397 (458)
T ss_pred ECCCCCCHHHHHHHHHCCC-------CCEEEEECC-----CCCCCCHHHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHH
T ss_conf 1576689899999997167-------772999646-----5667886999998763-05299997887799999998766
Q ss_pred -----CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf -----797999789899999999844789899997---71---------325489999999
Q gi|254781101|r 421 -----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 421 -----~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
...+..++++++|+..+.+.+++||+||+. .| ||..|.++|+.|
T Consensus 398 ~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nfeeRG~~F~~~V~~L 458 (458)
T PRK01710 398 EEKGIKIPIVIVNSLEEAVKVAKNIAEKGDIITLSPACASFDMFPNFEIRGNKFKEIVNNL 458 (458)
T ss_pred HHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6316886523373599999999975889798998973311035269999999999999739
No 20
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=378.19 Aligned_cols=321 Identities=23% Similarity=0.325 Sum_probs=242.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
..+.++||||||||||||+.|++++|+..|......|| ||.|..-+ +..+.|++|+|++..+ ++. +.-++|
T Consensus 102 ~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQ---Le~-~~~~~p 172 (438)
T PRK03806 102 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPALML-LDQDCELYVLELSSFQ---LET-TSSLQA 172 (438)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHH-HCCCCCEEEEECCCCC---CCC-CCCCCC
T ss_conf 27998899948998489999999999865997567715----77527775-1376757998324533---002-354576
Q ss_pred CEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20255531210123444-57888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472)
+++|||||++||||+|+ ++|+|+++|.+||++. +.+|+|.||+....+.... ...++||.+. .++.+..
T Consensus 173 ~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~---~~~v~n~dD~~~~~~~~~~-----~~~i~fg~~~-~~~~~~~- 242 (438)
T PRK03806 173 VAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA---KVCVVNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNR- 242 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHHCC-----CCEEEEECCC-CCEEEEE-
T ss_conf 3788635888788776545999999999886279---6899947518779864035-----6558982356-6436760-
Q ss_pred CCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEE
Q ss_conf 11346510012456543-2-212222222233332210356765101210345543114766443310100036531133
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKS-M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~-~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~i 341 (472)
......+. ..+.. . .-.++++|.||++|+++|+++|..+|++.+.|.++|.+|+++|+|+|.+ ...+|+++
T Consensus 243 --~~~~~~~~--~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~v---~~~~gv~f 315 (438)
T PRK03806 243 --QQGETWLR--VKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLV---LEHNGVRW 315 (438)
T ss_pred --CCCCEEEE--ECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEE
T ss_conf --57736897--378035401212666720498899999999983999899865520479999733899---99799999
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC
Q ss_conf 10002565321012577787411102687138851235417105899999999998649989999880389899851137
Q gi|254781101|r 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 (472)
Q Consensus 342 IDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~ 421 (472)
||||...||+|+.+||+++.. .++.++|+|++ .....+.++.+.+... ...++++|+....+.+.....
T Consensus 316 iNDSKaTN~~a~~~Al~s~~~-----~~~i~lI~GG~-----~K~~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~~~~ 384 (438)
T PRK03806 316 INDSKATNVGSTEAALNGLHV-----DGTLHLLLGGD-----GKSADFSPLARYLNGD-NIRLYCFGRDGAQLAALRPEV 384 (438)
T ss_pred EECCCCCCHHHHHHHHHHCCC-----CCCEEEEECCC-----CCCCCHHHHHHHHHCC-CEEEEEECCCHHHHHHHCCCC
T ss_conf 989721589999999982620-----39779995477-----5557879999986126-569999777889999641220
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 97999789899999999844789899997---71---------325489999999
Q gi|254781101|r 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 422 ~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
...++++++|++.+.+.+++||+||+. .| ||..|.++|++|
T Consensus 385 --~~~~~~l~~Av~~a~~~a~~gd~VLlSPacaSfD~f~nye~RG~~F~~lv~~L 437 (438)
T PRK03806 385 --AQLTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDEFARLAKEL 437 (438)
T ss_pred --CHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf --41540099999999986689998998974503014249999999999999962
No 21
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=372.02 Aligned_cols=330 Identities=25% Similarity=0.264 Sum_probs=251.0
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 99983069939998303654201233467777520112221221101457410-00123221444301566443321121
Q gi|254781101|r 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFL 178 (472)
Q Consensus 100 ~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L 178 (472)
-++|.....|+||||||||||||+.|++++|+..|....-.|| ||+|.. ++.-.++.|++|+|+|.-+ ++.
T Consensus 102 L~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQ---L~~- 173 (448)
T COG0771 102 LFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGN----IGTPALELLEQAEPADVYVLELSSFQ---LET- 173 (448)
T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCC----CCCCHHHHHCCCCCCCEEEEECCCCC---CCC-
T ss_conf 8987448999899979996288999999999855998321351----67137876201578987999924555---165-
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--
Q ss_conf 223232202555312101234445788886543310376221012101342468998752012333332222222222--
Q gi|254781101|r 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-- 256 (472)
Q Consensus 179 ~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a-- 256 (472)
+.-++|++++||||++||||||+|||+|+.+|++|++++.+ ++|+|.||++...+.... ....+.+|+..+..
T Consensus 174 ~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~---~~~~~~~fs~~~~~~~ 248 (448)
T COG0771 174 TSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEA---TKARVIWFSFGEPLAD 248 (448)
T ss_pred CCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHC---CCCEEEEEECCCCCCC
T ss_conf 76678557999448877865606999999999999838962--799837727776544303---6632688974664556
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 22234421134651001245654322122222222333322103567651012103455431147664433101000365
Q gi|254781101|r 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 (472)
Q Consensus 257 d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~ 336 (472)
.+++.+-... +....-...-.++++|.||++|+++|+++|..+|++.+.|.+.|++|++++||+|.+ ...
T Consensus 249 ~~~~~~~~~~-------~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v---~~~ 318 (448)
T COG0771 249 GDYIYDGKLV-------FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFV---GEK 318 (448)
T ss_pred CCEEECCHHC-------CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEC
T ss_conf 6334340110-------353000334215875452499899999999983999899999997389998622798---861
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 31133100025653210125777874111026871388512354171058999999999986499899998803898998
Q gi|254781101|r 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 (472)
Q Consensus 337 ~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~ 416 (472)
+++.+||||...||+|..+||..+. ++.++|+|+. .....-..+.+.+... ...++++|+....+..
T Consensus 319 ~gv~f~NDSKATN~~At~~AL~~~~-------~~v~lI~GG~-----~Kg~df~~L~~~~~~~-~~~~~~~G~~~~~i~~ 385 (448)
T COG0771 319 DGVLFINDSKATNVDATLAALSGFD-------GPVILIAGGD-----DKGADFSPLAEILAKV-IKKLVLIGEDAEKIAA 385 (448)
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCC-------CCEEEEECCC-----CCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHH
T ss_conf 9889960787888889999997189-------9779997777-----8888816889977415-5599994788899999
Q ss_pred HCCCCCC-EEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf 5113797-999789899999999844789899997---71---------3254899999999
Q gi|254781101|r 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472)
Q Consensus 417 ~~~~~~~-~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472)
.+++... ...++++++|++.+.+.+.+||+||+. .| ||..|.+.+..|.
T Consensus 386 ~l~~~~~~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~l~ 447 (448)
T COG0771 386 ALKEAGPSLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSELG 447 (448)
T ss_pred HHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 98752785361476999999999872589869976442164222379999999999999854
No 22
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=372.50 Aligned_cols=319 Identities=21% Similarity=0.234 Sum_probs=238.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
.+.++||||||||||||++|++++|+..|......|| ||.|..-+ +..+.|++|+|++..+. +. +.-++|+
T Consensus 106 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQL---e~-~~~~~p~ 176 (438)
T PRK04663 106 VDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGN----IGVPALDL-LEQDAELYVLELSSFQL---ET-TSSLKLK 176 (438)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHH-HHCCCCEEEEECCCCCH---HH-HCCCCCC
T ss_conf 5897899948998289999999999828997068721----57168875-30469789984451014---34-0356863
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02555312101234445788886543310376221012101342468998752012333332222222222222344211
Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 (472)
Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~ 265 (472)
++|||||++||||||+|+|+|.++|.+||++. ..+|+|.||+.... ... ...+++||.+.. ++....
T Consensus 177 iavilNIs~DHLD~h~s~e~Y~~aK~rIf~~~---~~~Ivn~dd~~~~~--~~~----~~~~~~fg~~~~-~~~~~~--- 243 (438)
T PRK04663 177 AAAFLNLSEDHMDRYQGMADYRQAKLRIFDHA---ELAVVNRDDKQTYP--DTA----SLQLVTFGFDQQ-EYGLIE--- 243 (438)
T ss_pred CHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEECCCHHHHHH--HHC----CCCEEEEECCCC-CCCEEE---
T ss_conf 33440688768777369999999999985369---78998653598887--760----785799604620-165597---
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE
Q ss_conf 34651001245654-32212222222233332210356765101210345543114766443310100036531133100
Q gi|254781101|r 266 CSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472)
..+..+....... .....++++|.||++|+++|+++|..+|++.+.|.++|++|+++|+|+|.+ ...+++++|||
T Consensus 244 -~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~glpHRlE~v---~~~~gv~~iND 319 (438)
T PRK04663 244 -HQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYNGLTHRCQVV---ADNRGIKWVND 319 (438)
T ss_pred -ECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEEECC
T ss_conf -27869998588776631430566455687799999999983999789865653358988752899---99899999747
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCE
Q ss_conf 02565321012577787411102687138851235417105899999999998649989999880389899851137979
Q gi|254781101|r 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 (472)
Q Consensus 345 sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~ 424 (472)
|...||+|+.+||++++. +++.++|+|+ ........++.+.+.+. ...++++|+....+.... ...
T Consensus 320 SKaTN~~a~~~Al~~~~~-----~~~i~lI~GG-----~~Kg~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~---~~~ 385 (438)
T PRK04663 320 SKATNVASTLAALSGLNL-----EGKLYLLVGG-----VGKGADFSELKPVLATL-NLQLCCFGEDGDQFMPLH---PSA 385 (438)
T ss_pred CCCCCHHHHHHHHHHCCC-----CCCEEEEECC-----CCCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHC---CCC
T ss_conf 877887899999983677-----7847999657-----66666879999998523-769999888899997432---453
Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 99789899999999844789899997---71---------325489999999
Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
..++++++|+..+.+.+++||+||+. .| ||..|.++|+.|
T Consensus 386 ~~~~~l~~Av~~a~~~a~~gd~vLlSPacaSfD~F~nyeeRG~~F~~lv~~l 437 (438)
T PRK04663 386 RRFETMEDAIESISPQLKSGDMVMLSPACASFDQFANFMARGDAFAELAKQY 437 (438)
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4406799999999986779998998974403003069999999999999974
No 23
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=371.98 Aligned_cols=323 Identities=19% Similarity=0.190 Sum_probs=236.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99399983036542012334677775201122212211014574100012322144430156644332112122323220
Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~i 186 (472)
..++||||||||||||++|++++|+..|......|| ||.|+.- .++++.+++|+|++..+ ++. +.-++|++
T Consensus 116 ~~~~IaVTGTnGKTTttsli~~iL~~~g~~~~~~GN----iG~p~~~-~~~~~~~~~V~ElSSfq---l~~-~~~~~p~i 186 (487)
T PRK03369 116 PRRWLVVTGTNGKTTTTSMLHAMLRAAGRRSVLCGN----IGSPVLD-VLDEPAELLAVELSSFQ---LHW-APSLRPEA 186 (487)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCHHHHH-HCCCCCCEEEEEECCCC---CCC-CCCCCCCE
T ss_conf 665599979887278999999999858998599813----6657664-12478858999813654---344-66668547
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf 255531210123444578888654331037622101210134246899875201233333222222--222222234421
Q gi|254781101|r 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264 (472)
Q Consensus 187 aiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~--~~~ad~~~~~i~ 264 (472)
+|||||++||||||+|+|+|.++|.+||. ++++|+|.||+....+....... ..+.|+. ....++...+..
T Consensus 187 aVitNI~~DHLD~h~s~e~Y~~aK~ri~~----~~~~v~n~DD~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 259 (487)
T PRK03369 187 GAVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVAGLDDSRAAALLDTAPAP---VRVGFRLGEPAAGELGVRDGH 259 (487)
T ss_pred EEECCCCHHHHHHCCCHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHCCCC---EEEEEECCCCCCCCEEEECCE
T ss_conf 88527887787542899999999755733----98799968768899997427876---799653278764421265368
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE
Q ss_conf 134651001245654322-1222222223333221035676510121034554311476644331010003653113310
Q gi|254781101|r 265 QCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~-~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472)
..... +........ -.++++|.||++|+++|++++..+|++.+.|.++|++|+++|+|+|.+ ...+|+.+||
T Consensus 260 ~~~~~----~~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~~aL~~F~glphR~E~v---~~~~Gv~fiN 332 (487)
T PRK03369 260 LVDRA----FADDLTLAPVDSIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVV---AVADGITYVD 332 (487)
T ss_pred EEEEE----CCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEEEEE
T ss_conf 99841----3677367246645886353699899999999984999999999998579999852899---9999999982
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCC
Q ss_conf 00256532101257778741110268713885123541710589999999999864998999988038989985113797
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~ 423 (472)
||+..||+|+.+||+++. +.++|+|+. .......++.+.+... +..++++|+....+.+.+.+...
T Consensus 333 DSKaTn~~a~~~Al~s~~--------~iilI~GG~-----~Kg~~~~~L~~~~~~~-v~~v~l~G~d~~~i~~~l~~~~~ 398 (487)
T PRK03369 333 DSKATNPHAARASILAYP--------RVVWIAGGL-----LKGASVDALVAEMASR-LVGAVLIGRDRAVVAEALSRHAP 398 (487)
T ss_pred CCCCCCHHHHHHHHHHCC--------CEEEECCCC-----CCCCCHHHHHHHHHHH-EEEEEEECCCHHHHHHHHHHHCC
T ss_conf 576689889999986155--------508961554-----3677707789999754-25999978888999999974277
Q ss_pred ---E---EE----------------------------ECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHH
Q ss_conf ---9---99----------------------------789899999999844789899997---71---------32548
Q gi|254781101|r 424 ---V---HY----------------------------SETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGF 457 (472)
Q Consensus 424 ---~---~~----------------------------~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~l 457 (472)
+ .. ..++++|++.+.+.+++||+||+. .| ||..|
T Consensus 399 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AV~~A~~~a~~GdvVLLSPacaSfD~f~nye~RG~~F 478 (487)
T PRK03369 399 DVPVVEVVTGEDAGMPATPEACVLDVTKVDDAGGTLGDAVMTAAVAAARGLARPGDTVLLAPAGASFDQFTGYADRGDAF 478 (487)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCHHCCCCHHHHHHHH
T ss_conf 66521331132222100134544333321001120357799999999997489999899795553410307999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254781101|r 458 YRLINLLLE 466 (472)
Q Consensus 458 e~iv~~L~~ 466 (472)
.++|++|.+
T Consensus 479 ~~~V~~l~~ 487 (487)
T PRK03369 479 AAAVRAAIR 487 (487)
T ss_pred HHHHHHHHC
T ss_conf 999999759
No 24
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=369.81 Aligned_cols=326 Identities=20% Similarity=0.209 Sum_probs=239.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9939998303654201233467777520112221221101457410-001232214443015664433211212232322
Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
+.++||||||||||||++|+++||++.|......|| ||+|++ .+...+..+++|+|++..+ ++. +.-++|+
T Consensus 122 ~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~~~~l~~~~~~d~~VlElSSfQ---L~~-~~~~~p~ 193 (476)
T PRK00141 122 PRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVAVGN----IGIPVSAALVAQNRIDVLVAELSSFQ---LHW-APTFTPD 193 (476)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHHHHCCCCCCEEEEECCCCH---HCC-CCCCCCC
T ss_conf 776388968996798999999999837997289950----67246666525787758999778201---200-2236865
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 025553121012344457888865433103762210121013424689987520123333322222222222--223442
Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKW 263 (472)
Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad--~~~~~i 263 (472)
++|||||++||||||+|+|+|+++|.+||++ ...|+|.||+....+...... ..+++|+.+...+ +...+.
T Consensus 194 iaVilNIs~DHLD~h~s~e~Y~~aK~kI~~~----~~~vi~~Dd~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~ 266 (476)
T PRK00141 194 AGVVLNLAEDHIDWHGSMRDYALDKARVLTA----PVAVIGADDPYVVELTREADL---SGLIGFTLGEPAEGQVGVRAG 266 (476)
T ss_pred EEEEECCCHHHHHHHCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHCCC---CCEEEECCCCCCCCCEEEECC
T ss_conf 8987268878986626999999999987348----824997787899998874478---867985278755352447768
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE
Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472)
............. ...-.++++|.||++|+++|++++..+|++.+.|.++|++|+++|+|+|. ....+++.+||
T Consensus 267 ~~~~~~~~~~~~l---~~~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~HR~E~---v~~~~gV~fiN 340 (476)
T PRK00141 267 ELVDNAFGDNVVL---ASADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAGHRGQV---VAEHDGVHFID 340 (476)
T ss_pred EEEEEECCCCCEE---CCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE---EEEECCEEEEC
T ss_conf 8998515775032---12432377653359999999999998499999999999856898861279---99989999981
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC--
Q ss_conf 002565321012577787411102687138851235417105899999999998649989999880389899851137--
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-- 421 (472)
||...||+|+.+||++++ +.++|+|+ ........++.+.+.. .+..++++|+....+.+.+...
T Consensus 341 DSKaTN~~at~~AL~~~~--------~iilI~GG-----~~Kg~d~~~l~~~~~~-~vk~v~l~G~~~~~i~~~l~~~~~ 406 (476)
T PRK00141 341 NSKATNPHAADSALAGHE--------SVIWVAGG-----QLKGADIDELIATHGG-RIKAALVLGADRAEIVAAVKEHAP 406 (476)
T ss_pred CCCCCCHHHHHHHHHHCC--------CCEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHHHHCC
T ss_conf 798999899999997288--------73999447-----6577787999999863-310999976898999999985478
Q ss_pred -CCEEEE------CCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf -979997------89899999999844789899997---71---------325489999999985
Q gi|254781101|r 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 422 -~~~~~~------~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
..+... +++++|+..+.+...+||+||+. .| ||..|.+.|..+.+-
T Consensus 407 ~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLLSPacaSfD~f~nyeeRG~~F~~~V~~~~~~ 471 (476)
T PRK00141 407 DAPVTVTDKTDPEEAMREAVAAAFSLAEPGDSVVLAPAAASLDMYTGMGQRGDLFAHYIIGTIKG 471 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 88268861545788999999999973889898998945430205179999999999999999713
No 25
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=369.19 Aligned_cols=325 Identities=19% Similarity=0.205 Sum_probs=239.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC
Q ss_conf 69939998303654201233467777520112221221101457410-001232214443015664433211212-2323
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLT-HLVR 183 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~-~i~~ 183 (472)
+..++||||||||||||+.|+++||+..|......|| ||.|+. ++.-.+..+++|+|+|..+ ++.+. ..++
T Consensus 113 ~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~P~~~~~~~~~~~d~~VlElSSfQ---Le~~~~~~~~ 185 (468)
T PRK04690 113 SVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN----IGQPLLEVLAPQPAPAYWAIELSSYQ---TGDVGRSGAR 185 (468)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHHHHHCCCCCCCEEEEEECCCH---HHHHHHCCCC
T ss_conf 6787899969985899999999999857998289867----76446765324788857999943205---7654531478
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22025553121012344457888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472)
Q Consensus 184 P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472)
|+++|||||++||||||+|+|+|+++|.+||.+..++ .+++|.||+....+.. ....+++|+.... +.....
T Consensus 186 p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~~~-~~vin~~D~~~~~~~~-----~~~~v~~~~~~~~--~~~~~~ 257 (468)
T PRK04690 186 PELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGRPR-IALLNAADPRLAALQL-----PDSEVRWFNHPDG--WHVRGD 257 (468)
T ss_pred CCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCC-EEEEECCCHHHHHHHC-----CCCCEEEECCCCC--EEECCC
T ss_conf 7787530488878746089999999999999657997-7999788889997525-----7784699517775--376066
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf 1-134651001245654322122222222333322103567651012103455431147664433101000365311331
Q gi|254781101|r 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472)
Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472)
. ...+...+ ....++++|.||++|+++|++++..+|++.+.|.++|++|+++|+|+|.+ ...+++.+|
T Consensus 258 ~~~~~~~~~~--------~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~I~~aL~sF~glpHRlE~v---~~~~gv~fi 326 (468)
T PRK04690 258 VVYRGEQAIF--------DTANVPLPGRHNRGNLCAVLAALEALGLDAAALAPAAASFRPLPNRLQEL---GSVDGITYV 326 (468)
T ss_pred EEEECCCCEE--------CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEEEE
T ss_conf 7883562011--------11236777700487699999999983898899999874267999752799---998999997
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC--
Q ss_conf 000256532101257778741110268713885123541710589999999999864998999988038989985113--
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-- 420 (472)
|||...||+|+.+||+++.. .+.++|+|+ ......+.++.+.+.+...-.|+++|+....+.+.+..
T Consensus 327 NDSKATN~~a~~~AL~~f~~------~~iilI~GG-----~~Kg~d~~~l~~~~~~~~~~~vi~~G~~~~~i~~~~~~~~ 395 (468)
T PRK04690 327 NDSISTTPHASLAALDCFAG------RRVALLVGG-----HDRGLDWTDFAAHMAQQAPLEIVTMGANGPRIHALLAPLA 395 (468)
T ss_pred CCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 37877898999999972766------857999736-----7667787999999863376899997478899999975234
Q ss_pred ---CCCEEEECCHHHHHHHHHHH-CCCCCEEEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf ---79799978989999999984-4789899997---71---------325489999999985
Q gi|254781101|r 421 ---SIHVHYSETMDGLFLFIQSS-LVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 421 ---~~~~~~~~~~e~a~~~l~~~-~~~gdiVLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
...+..++++++|+..+.+. ..+||+||+. .| ||..|.+++..+-..
T Consensus 396 ~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLSPacASfD~F~nyeeRG~~Fk~L~~~~~~~ 458 (468)
T PRK04690 396 DAGRFGLHAADDLPHAMALARTALGAQGGVVLLSPGAPSFGAYRDYVARGRHFAQLAGFDPAA 458 (468)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 456310254067999999999960589998997953115004179999999999987808777
No 26
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=368.33 Aligned_cols=326 Identities=24% Similarity=0.277 Sum_probs=246.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC-CHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC--
Q ss_conf 99399983036542012334677775201122212211014574-100012322144430156644332112122323--
Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR-- 183 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvp-ltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~-- 183 (472)
+.|+||||||||||||+.|++++|+..|......|| ||+| +..+.- ++.+++|+|+|.-+ ++.+- =++
T Consensus 109 ~~~~~aITGTnGKtTTT~L~~~~L~~~G~~a~~gGN----IG~p~L~~~~~-~~~~~~VlElSSFQ---L~~~~-~~~p~ 179 (476)
T TIGR01087 109 PAKVVAITGTNGKTTTTSLLYHLLKAAGLKAVLGGN----IGTPALEVLDQ-EGAELYVLELSSFQ---LETTE-SLRPA 179 (476)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHCC-CCCCEEEEEECCHH---HCCCC-CCCCC
T ss_conf 873799972686079999999999846997786257----88125553105-88966999700032---04575-55665
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCC---CHHHHHHHHHCCCCCCCCCCCCCCCC---CCC
Q ss_conf 220255531210123444578888654331037622101210134---24689987520123333322222222---222
Q gi|254781101|r 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGKSK---NAD 257 (472)
Q Consensus 184 P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~D---d~~~~~l~~~~~~~~~~~i~~~g~~~---~ad 257 (472)
|.+++||||++||||||+|||+|.++|++|+.+++.++++|+|.| ++.+........ . ++++|+..+ ..+
T Consensus 180 p~i~~~lNi~~DHLD~h~~~~~Y~~aK~~i~~~~~~~d~~v~n~d~~~~~~~~~~~~~~~---~-~~~~~~~~~CP~~~~ 255 (476)
T TIGR01087 180 PEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADQAYDPRFTRLEKKSK---A-QVVLFSVEKCPAEAE 255 (476)
T ss_pred CEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCC---C-EEEEECCCCCCHHHH
T ss_conf 124687066356301107988999998898525998767988120025504652124675---3-078740445808899
Q ss_pred CCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC----CHHHHHHHHCCCCCCC
Q ss_conf 22344211346510012456--------54322122222222333322103567651012----1034554311476644
Q gi|254781101|r 258 FQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD----VDTAIKALSVFHPKEG 325 (472)
Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~--------~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~----~~~i~~~L~~~~~~~G 325 (472)
..+ ...+++..+...-. .-......+++|.||++|+++|++++..+|++ .+.+.+.|++|++++|
T Consensus 256 ~~l---~~~~~~~~l~~~~e~~~~C~~~~~~~~~~~~l~g~h~~~n~laa~ala~~~g~~~~~~~~~~~~~l~~F~~~~H 332 (476)
T TIGR01087 256 QGL---EIRDGKEYLKPNDENDFACDDLTILPCEELKLLGLHNAENILAAIALAKSLGLNSDEELEAILEALRSFKGLPH 332 (476)
T ss_pred HHH---HHCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 764---12388526336787630000112433215676788899999999999998288976016899999984579876
Q ss_pred CCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 33101000365311331000256532101257778741110268713885123541710589999999999864998999
Q gi|254781101|r 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 (472)
Q Consensus 326 R~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~ 405 (472)
|+|. ....+|+.+||||--.||+|+.+||..++. ++|.++|+|++ +.......+.+.+... ...++
T Consensus 333 RlE~---~~~~~G~~f~NDSKATn~~At~~AL~~~~~-----~~~~~LI~GG~-----~KG~df~~L~~~~~~~-~~~~~ 398 (476)
T TIGR01087 333 RLEY---VGQKNGVHFINDSKATNVHATLAALSALKN-----PKRVILIVGGD-----DKGADFSPLAPALKKK-VKAVL 398 (476)
T ss_pred CEEE---EEECCCEEEEECCCCCCHHHHHHHHHHCCC-----CCEEEEEEECC-----CCCCCHHHHHHHHCCC-EEEEE
T ss_conf 2688---777285479825621218999999984799-----97189996034-----6899848999984365-07999
Q ss_pred EECCCHHHHHHHCCCCCCEE------EECCHHHHHHHHHHHCCCC--CEEEE---ECC---------CHHHHHHHHH
Q ss_conf 98803898998511379799------9789899999999844789--89999---771---------3254899999
Q gi|254781101|r 406 LSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDG--DVVVV---KSS---------NSCGFYRLIN 462 (472)
Q Consensus 406 ~~G~~~~~~~~~~~~~~~~~------~~~~~e~a~~~l~~~~~~g--diVLi---KGS---------r~~~le~iv~ 462 (472)
++|+....+++.++...... .++++++|++.+.+.+++| |+||+ ++| ||..|-++|+
T Consensus 399 ~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~g~~d~vLLSPacASFDqF~~y~eRGe~F~~~v~ 475 (476)
T TIGR01087 399 AIGEDAAKIAKLLKEIGLVVKYGEETLVESLEEAVQAAREVAKEGNADVVLLSPACASFDQFKSYEERGEKFKELVR 475 (476)
T ss_pred EECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 85354789999863427643546530577899999999997127997679888641217773038888899999981
No 27
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=347.19 Aligned_cols=412 Identities=23% Similarity=0.301 Sum_probs=290.2
Q ss_pred HHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHC----CCEEEEEC-CCCCCC----
Q ss_conf 788998727999526887147467740222378988897168874768889999986----98899985-521245----
Q gi|254781101|r 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK----GAGLVVVN-TDMVAS---- 77 (472)
Q Consensus 7 ~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~----Ga~~~i~~-~~~~~~---- 77 (472)
+.+++..-|.+..+ . | |..-.|..+.++.-.+=|.+ | .|-.+.++. ++..||++ .-..+.
T Consensus 15 lA~~L~~~G~~VsG-S-D--~~~~~y~t~~L~~~Gi~I~~------g-~h~~~n~~~~p~g~~~vVv~S~~Ai~~~NpEi 83 (491)
T TIGR01082 15 LAEILLNRGYKVSG-S-D--IAENAYTTKRLEALGIKIYI------G-EHSAENLDDLPTGAADVVVVSAAAIKEDNPEI 83 (491)
T ss_pred HHHHHHHCCCCEEE-E-E--CCCCCCHHHHHHHCCCEECC------C-CCCHHHHCCCCCCCCCEEEEEEECCCCCCHHH
T ss_conf 99999857890877-2-0--33563158999867876627------9-96779820367897437998640337888889
Q ss_pred --CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCHH
Q ss_conf --5446972899599899999999999830699399983036542012334677775201--122212211014574100
Q gi|254781101|r 78 --IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTL 153 (472)
Q Consensus 78 --~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~--~~~t~gn~Nn~iGvpltl 153 (472)
.....+|++.= -++|++|- +.+ + .-||||||+||||||+||+++|+..|. ++-..|..+. .| +=
T Consensus 84 ~~A~~~~IPv~~R---~~~Lael~---~~~-k-~~iaVaGtHGKTTTTamia~~~~~aGLdPt~~~GG~~~~-~~---~N 151 (491)
T TIGR01082 84 VEAKERGIPVIRR---AEMLAELM---RKR-K-ESIAVAGTHGKTTTTAMIAVILKEAGLDPTVIVGGEVKE-AG---TN 151 (491)
T ss_pred HHHHHCCCCEECH---HHHHHHHH---HHH-C-CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCC-CC---CC
T ss_conf 9999648881337---89999998---620-8-707998368725689999999984499976898664366-57---74
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHH
Q ss_conf 012322144430156644332112122323220255531210123--444578888654331037622101210134246
Q gi|254781101|r 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 (472)
Q Consensus 154 l~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld--~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~ 231 (472)
.++-...+|+|.|+-=|..+ ..---++|+++|||||.+||+| |++|+|.+.++..+.+.++++.|.+|+|.|||.
T Consensus 152 a~~g~~~~~lvaEaDESd~~---~sFl~~~P~~ai~TNie~DH~D~tY~~~~E~~~~aF~~F~~~l~~~G~~v~c~DD~~ 228 (491)
T TIGR01082 152 ARLGSSGEYLVAEADESDRS---ASFLHLQPEVAIVTNIEPDHLDNTYGSSLERLKAAFEKFIHNLPFYGLAVICADDPV 228 (491)
T ss_pred EEECCCCCEEEEEEEECCCC---CCHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 35714686799998723776---401206985799747774347766645789999999999982788879999838654
Q ss_pred HHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8998752012333332222222-22222234421134651001245654--------32212222222233332210356
Q gi|254781101|r 232 FELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGI 302 (472)
Q Consensus 232 ~~~l~~~~~~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~--------~~~~~l~~~G~hnv~NalaAia~ 302 (472)
++.+...+.......+++++.+ +++|+++.++........|.+..... ..++.++++|.||+.|++||+|+
T Consensus 229 ~~~l~~~~~~~r~d~~~~y~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~G~~~~~~~~pG~HNvLNAlAA~av 308 (491)
T TIGR01082 229 LRKLVPKATESRKDVVITYGGSGEDADIRAENIQQSGAEFEFSVRLKGKLGEATTEGPLEFKLNLPGRHNVLNALAAIAV 308 (491)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78776355533870478668777641477887432264589999970452201110027999803872006789999988
Q ss_pred HHHHCCCC---------HHHHHHHHCCCCCCCCCCCCEECCCCCC------EEEEEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 76510121---------0345543114766443310100036531------13310002565321012577787411102
Q gi|254781101|r 303 VSILTADV---------DTAIKALSVFHPKEGRGKRYRCALNQGF------FTLIDESYNANPASMKAAISVLSQISPHG 367 (472)
Q Consensus 303 ~~~lGi~~---------~~i~~~L~~~~~~~GR~~~~~~~~~~~~------~~iIDDsYNAnP~S~~aal~~l~~~~~~~ 367 (472)
|..+|++. +.|+++|.+|+++..|++.. ...++ +++||| |.+||+.++++|+++++..+.+
T Consensus 309 a~~~g~~~~G~~~~~~~~~I~~~L~~F~G~~RRf~~~---g~~~~~~n~g~~~~~DD-YAHHPtEi~aTl~aAr~~~~~k 384 (491)
T TIGR01082 309 ALELGLDFYGKVIVDFLEAIKRALANFQGVKRRFEIL---GECNGGNNNGTVLLIDD-YAHHPTEIKATLAAARQVYPDK 384 (491)
T ss_pred HHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHH---HHCCCCCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8872212368556415899999985068973101201---00278987527999965-8999789999999998752117
Q ss_pred CCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCC-CCEEEEE-----------CCCHHHHHHHCCC---CCCEEEECCHHH
Q ss_conf 687138851235417105899999999998649-9899998-----------8038989985113---797999789899
Q gi|254781101|r 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLS-----------GFHVLALKDALPR---SIHVHYSETMDG 432 (472)
Q Consensus 368 ~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~-~d~v~~~-----------G~~~~~~~~~~~~---~~~~~~~~~~e~ 432 (472)
.+|.++||=.= .=.+...+..+.++.+. . +|.|++. |...+.+.+.+.. .....|++++++
T Consensus 385 ~~r~v~~FQPH--rYsRT~~~~~~F~~~L~--~haD~l~~~diY~A~E~~~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~ 460 (491)
T TIGR01082 385 NRRIVVVFQPH--RYSRTKDLFDDFAKVLS--DHADELILLDIYAAGEEPIAGIDGKSLARKITQKKGKEEPYFVPDLAE 460 (491)
T ss_pred CCEEEEEECCC--CHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 95799997498--56789988999999997--308999981532113677678778999999862578777610421778
Q ss_pred HHHHHHHHCCCCCEEEEECC
Q ss_conf 99999984478989999771
Q gi|254781101|r 433 LFLFIQSSLVDGDVVVVKSS 452 (472)
Q Consensus 433 a~~~l~~~~~~gdiVLiKGS 452 (472)
..+.+...+.+||++|..|.
T Consensus 461 ~~~~l~~~~~~GD~~~~~GA 480 (491)
T TIGR01082 461 VVEFLAEVLQSGDLILTMGA 480 (491)
T ss_pred HHHHHHHHCCCCCEEEEECC
T ss_conf 99999997169989999605
No 28
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=335.79 Aligned_cols=354 Identities=23% Similarity=0.295 Sum_probs=263.8
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCHHCCCC
Q ss_conf 46972899599899999999999830699399983036542012334677775201--1222122110145741000123
Q gi|254781101|r 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMP 157 (472)
Q Consensus 80 ~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~--~~~t~gn~Nn~iGvpltll~~~ 157 (472)
...+|++.- -+.|.+ ..+. -..|||+||+|||||++|++++|...|. ++...|..|+ .|. ++.
T Consensus 88 e~~ipi~~r---~e~L~e---lm~~---~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~-~g~-----na~ 152 (459)
T COG0773 88 ERGIPVISR---AEMLAE---LMRF---RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN-FGT-----NAR 152 (459)
T ss_pred HCCCCEECH---HHHHHH---HHHC---CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCC-----CCC
T ss_conf 859981628---999999---9707---7169994788754089999999986799987997774455-776-----554
Q ss_pred C-CCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHH
Q ss_conf 2-214443015664433211212232322025553121012344457888865433103762210121013424689987
Q gi|254781101|r 158 V-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 (472)
Q Consensus 158 ~-~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~ 236 (472)
. +.+|.|+|.--|. .----.+|+++|+|||..||+|+|++++++.++-.+++++++..|.+|+|.|||.++.+.
T Consensus 153 ~g~~~~fV~EADEsD-----~sFl~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~l~ 227 (459)
T COG0773 153 LGSGDYFVAEADESD-----SSFLHYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRELL 227 (459)
T ss_pred CCCCCEEEEEECCCC-----CCCCCCCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 588864999951541-----650248897899807883400121899999999999998388665599978888899987
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 5201233333222222222222234421134651001245654-322122222222333322103567651012103455
Q gi|254781101|r 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 (472)
Q Consensus 237 ~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~ 315 (472)
.+..+ ..+++||.+..+||++.++.....++.|.+...++ ..++.++++|+||+.|+++|++++..+|++.+.|++
T Consensus 228 ~~~~~---~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~~ 304 (459)
T COG0773 228 SRGCW---SPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIAE 304 (459)
T ss_pred HCCCC---CCEEEECCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 22258---737942478767289997687066427999986855679997267622688899999999984999899999
Q ss_pred HHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHH
Q ss_conf 43114766443310100036531133100025653210125777874111026871388512354171058999999999
Q gi|254781101|r 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 (472)
Q Consensus 316 ~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~ 395 (472)
+|.+|+++..| +++....+++++||| |.++|+.+++.|+++++..+. .+|.++|+--= .-.+...++.+..+.
T Consensus 305 aL~~F~GvkRR---fe~~g~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~-~~rIvaifQPH--rySRt~~~~~dF~~~ 377 (459)
T COG0773 305 ALASFQGVKRR---FELKGEVNGVTVIDD-YAHHPTEIKATLAAARQKVPG-GKRIVAVFQPH--RYSRTRDLLDDFAKA 377 (459)
T ss_pred HHHHCCCCCEE---EEEEEEECCEEEEEC-CCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCC--CHHHHHHHHHHHHHH
T ss_conf 99738896413---688646887899856-888979999999999976588-86699997787--317589999999988
Q ss_pred HHHCCCCEEEEEC-----CC-------HHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 9864998999988-----03-------89899851137979997898999999998447898999977132548999999
Q gi|254781101|r 396 LSLYNISHVWLSG-----FH-------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 (472)
Q Consensus 396 ~~~~~~d~v~~~G-----~~-------~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~ 463 (472)
. ..+|.|++.. ++ ...+.+.+....+.. +++.+++...+.+.+++||+||+.|.=. +.++...
T Consensus 378 l--~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~-~~~~~~~~~~l~~~~~~gD~il~mGAGd--i~~~~~~ 452 (459)
T COG0773 378 L--SDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVD-VPDLDDLVELLAKVAQPGDVILFMGAGD--IGKIARE 452 (459)
T ss_pred H--HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHCCCCCEEEEECCCC--HHHHHHH
T ss_conf 8--519999996233357888767753999999851377014-7888899999996478999899966884--7889999
Q ss_pred HHHHC
Q ss_conf 99850
Q gi|254781101|r 464 LLEEF 468 (472)
Q Consensus 464 L~~~~ 468 (472)
+++++
T Consensus 453 ~~~~l 457 (459)
T COG0773 453 LLEAL 457 (459)
T ss_pred HHHHH
T ss_conf 99875
No 29
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=338.16 Aligned_cols=301 Identities=18% Similarity=0.200 Sum_probs=225.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
.+.|+||||||||||||++|++++|+..|......|| ||+|+ +..-.+.++.|+|+|..+. +. .....|.
T Consensus 100 ~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~~~~VlElSSfQL---~~-~~~~~p~ 169 (418)
T PRK00683 100 QRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGN----IGLPI--LDGMQQPGVRVVEISSFQL---AD-QEESIPV 169 (418)
T ss_pred CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEEC----CCHHH--HHHHCCCCCEEEEEEHHHH---HH-HHHCCCC
T ss_conf 4798799976898660999999999867998188803----46577--7643258946998312423---21-2430776
Q ss_pred E--EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0--25553121012344457888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r 186 I--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472)
Q Consensus 186 i--aiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472)
+ ||||||++||||||+|+|+|+++|.+|+..++....++++.+........... ++..
T Consensus 170 ~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~------ 229 (418)
T PRK00683 170 LSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCLRNPDDLWVGDERSLGNSYLEYV--------------QEIM------ 229 (418)
T ss_pred CCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH--------------HHHH------
T ss_conf 22121015784241221689999999999998467976468525411017888877--------------7777------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf 113465100124565432212222222233332210356765-1012103455431147664433101000365311331
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~-lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472)
..... ...+...+.||.+|+++|++++.. .|++.+.+.++|++|+++|+|+|.+ ...+|+.+|
T Consensus 230 ~~~~~-------------~~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v---~~~~Gv~fi 293 (418)
T PRK00683 230 RLLDK-------------GSALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYL---GEKDGVHYI 293 (418)
T ss_pred HHHCC-------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCCEEE
T ss_conf 77445-------------31016544032988999999999857999999999997348841113688---881782376
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
Q ss_conf 00025653210125777874111026871388512354171058999999999986499899998803898998511379
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~ 422 (472)
|||...||+|+.+||+++.. +.|+|+|+ ........++.+.+.+. +..++++|+....+.+.+....
T Consensus 294 NDSKaTN~~a~~~AL~s~~~-------~iilI~GG-----~~K~~d~~~L~~~~~~~-vk~v~~~G~~~~~i~~~l~~~~ 360 (418)
T PRK00683 294 NDSKATTVSAVEKALLAVGK-------DVIVILGG-----RNKGGDFPSLLPVLRQT-AKHVVAMGECRQEIAQALSEKF 360 (418)
T ss_pred CCCCCCCHHHHHHHHHHCCC-------CCEEEECC-----CCCCCCHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCC
T ss_conf 37767898999999985678-------85899757-----87667869999998631-8499996889999999875699
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf 7999789899999999844789899997---71---------3254899999999
Q gi|254781101|r 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472)
Q Consensus 423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472)
++..++++++|+..+.+.+++||+||+. .| ||..|.++|..|+
T Consensus 361 ~~~~~~~l~eAv~~a~~~a~~gd~VLLSPacaSfD~F~nyeeRG~~Fk~lV~~l~ 415 (418)
T PRK00683 361 PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAYFKQLVGEME 415 (418)
T ss_pred CEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8798598999999999847898989989755010021599999999999999732
No 30
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7e-45 Score=316.23 Aligned_cols=311 Identities=17% Similarity=0.182 Sum_probs=219.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 99999999830699399983036542012334677775201122212211014574100012322144430156644332
Q gi|254781101|r 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 (472)
Q Consensus 95 l~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~ge 174 (472)
..++--+++ +.+++||||||||||||+.|+.++|+..+. ...|| ||.|+ +.+.++.+++|+|+|..+
T Consensus 78 ~seiel~~~--~~~~~I~ITGTNGKsTtt~li~~iL~~~g~--~~~GN----IG~Pl--~~~~~~~~~~VlElSSfQ--- 144 (401)
T PRK03815 78 ISEYDYFYS--FMPFSIWISGTNGKTTTTQMLTHLLEDFGA--VSGGN----IGTPL--AELDPNAKIWVLETSSFT--- 144 (401)
T ss_pred HHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCCC--CEECC----CCHHH--HHCCCCCCEEEEEECHHH---
T ss_conf 149999985--278748998477778999999999986698--13041----66438--862877887999934454---
Q ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 11212232322025553121012344457888865433103762210121013424689987520123333322222222
Q gi|254781101|r 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 (472)
Q Consensus 175 i~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~ 254 (472)
++. +.-++|+++|+|||++||||||+|+|+|+++|.+||.++++++.+++|.+..... .....++|....
T Consensus 145 Le~-~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~~~~~~~~i~~~~~~~~~---------~~~~~i~~~~~~ 214 (401)
T PRK03815 145 LHY-TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKLMNEGSVAILPKKYKETP---------TKAQKISYEDEE 214 (401)
T ss_pred CCC-CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC---------CCCEEEEECCHH
T ss_conf 066-7566876898836882052362689999999999996288776799722330476---------661799726627
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 22222344211346510012456543221222222223333221035676510121034554311476644331010003
Q gi|254781101|r 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472)
Q Consensus 255 ~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472)
. .. ..+.+ .. -.+.+.|.|+..++ +|+ +....+..+.+.++|++|+++|+|+|.+ .
T Consensus 215 ~--~~----------~~~~i--~~----~~i~~~~~~~~~~~-~a~--~~~~~~~~~~~~~~l~~F~gl~HRlE~v---~ 270 (401)
T PRK03815 215 D--LA----------EKFGI--DT----EKINFKGPFLLDAL-LAL--AVEKILFDENDYERLNAFVIEAHKLEEF---R 270 (401)
T ss_pred H--HH----------HHCCC--CH----HHCCCCHHHHHHHH-HHH--HHHHCCCCHHHHHHHHHCCCCCCCEEEE---E
T ss_conf 7--78----------76588--77----87056458999999-999--9985566355899998489988853899---9
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 65311331000256532101257778741110268713885123541710589999999999864998999988038989
Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 (472)
Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~ 414 (472)
..+|+.+||||...||+|+.+||+++.. .+.++|+|+ ........++.+.+... +..++++|+....+
T Consensus 271 ~~~gv~fiNDSKATN~~At~~Al~~~~~------~~iilI~GG-----~~Kg~d~~~L~~~i~~~-~~~v~~~G~~~~~i 338 (401)
T PRK03815 271 DKQGRLWVDDSKATNIDATIQALKRYKD------KKIHLILGG-----DDKGVDLTPLFEELKNF-DIEIYAIGSNAEKI 338 (401)
T ss_pred EECCEEEECCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHH
T ss_conf 8489899668878988999999983767------867999637-----65567879999997640-56999987899999
Q ss_pred HHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 985113-797999789899999999844789899997---71---------325489999999
Q gi|254781101|r 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 415 ~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
.+.+.. +..+..++++++|+..+.+.+++||+||+. .| ||..|.++|+.|
T Consensus 339 ~~~~~~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLLSPacASfD~FknyeeRG~~Fk~~V~~L 401 (401)
T PRK03815 339 LALAKEFNIKAQKCEFLEKAVNEIKKVLKQNEVALLSPAAASLDQFSSYAERGEKFKEFVLKL 401 (401)
T ss_pred HHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 999875698469828699999999985789798998974403002069999999999999739
No 31
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=100.00 E-value=2e-44 Score=313.29 Aligned_cols=436 Identities=23% Similarity=0.291 Sum_probs=283.2
Q ss_pred CHHHHH-HHHCCEEEC-CCCCCEEEEEEEECCCC--------------CCCCEEEECC--------------CCCCCHHH
Q ss_conf 678899-872799952-68871474677402223--------------7898889716--------------88747688
Q gi|254781101|r 6 TFHDLL-QAIQGHSIG-IVPQGFVNGISIDSRSI--------------APQEAFFAIK--------------GPHYDGHD 55 (472)
Q Consensus 6 ~~~~l~-~~~~g~~~~-~~~~~~i~~i~~dSr~v--------------~~g~lFval~--------------g~~~DGh~ 55 (472)
|++||. +.+|..... .-.+...+.|..|+=.. .+|.. |-|+ ....|.|.
T Consensus 334 Ti~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~~~~L~kqG~~ldsVp~kG~~-V~Lr~~ANLSTGG~A~DrTDeiHP~~ 412 (876)
T TIGR02068 334 TIEELIGEQINKDPLRGDGHDKPLTKIRLDSVAKLVLAKQGLTLDSVPAKGRI-VYLRATANLSTGGVAIDRTDEIHPEN 412 (876)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHCCCE-EEEECCCCCCCCCEEEECCCCCCHHH
T ss_conf 07664057646777888866778883433079999998549751154540978-88632477445873162257538458
Q ss_pred HHHHHHHCCCEEE--------EECCCCCCCCCCCCCCEEEECC-HHHHH---------HHHHHHH-------HHCCCCCE
Q ss_conf 8999998698899--------9855212455446972899599-89999---------9999999-------83069939
Q gi|254781101|r 56 FILHAVQKGAGLV--------VVNTDMVASIGSLSIPVFGVDD-VLGAL---------NKLAVAA-------RLRSKATI 110 (472)
Q Consensus 56 ~i~~A~~~Ga~~~--------i~~~~~~~~~~~~~~~~i~v~d-~~~al---------~~la~~~-------~~~~~~~v 110 (472)
+.-|. .=|..| |+..+...++.+.+=.++.|+= |=--| +..|++. .+....||
T Consensus 413 -~~~a~-~aAk~iGLDiaG~D~v~~di~~PL~~~~G~iVEVNAaPGlrMH~~PS~G~pR~Va~Ai~d~LFP~~~~grIPi 490 (876)
T TIGR02068 413 -IAIAV-RAAKIIGLDIAGVDVVTEDISKPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVAKAIVDMLFPEEDDGRIPI 490 (876)
T ss_pred -HHHHH-HHHHEEEEEECCEEECCCCCCCCHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEE
T ss_conf -99998-7520000012122200310003745459729998567663444677774698710268752288878983448
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC---CHHHHHCCC----C---CCCHHCC--CCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 9983036542012334677775201122---212211014----5---7410001--23221444301566443321121
Q gi|254781101|r 111 IAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHI----G---VPLTLAR--MPVDVDFGIFELGMSHLGEIRFL 178 (472)
Q Consensus 111 I~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~gn~Nn~i----G---vpltll~--~~~~~~~~V~E~g~~~~gei~~L 178 (472)
|+||||||||||+.|++|||+..|++++ |.|-|=++- | =|.|.-+ ++++.|.||+|.. .|-|-+-
T Consensus 491 V~vTGTNGKTt~~RL~Ahil~~~G~~vG~T~tDG~Yi~~~~v~~GDntGP~SAr~~L~d~~VdaAVLEta---rGGiLR~ 567 (876)
T TIGR02068 491 VAVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKKLVEKGDNTGPKSARRILADPTVDAAVLETA---RGGILRE 567 (876)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCHHHHHHCCCCCCEEEEEEECC---CCCCCCC
T ss_conf 8872689835578899999985698276420376775576662478987157301227888018998627---8722066
Q ss_pred -CCCCCCCEEEEEEEC-CCHHHHHH--HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf -223232202555312-10123444--57888865433103762210121013424689987520123333322222222
Q gi|254781101|r 179 -THLVRPHIAVITTIA-PAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 (472)
Q Consensus 179 -~~i~~P~iaiiTNI~-~dHld~~~--s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~ 254 (472)
-.+=..+++|+|||+ .|||+.+. ++|+.+.-|.-+.+.+.++|.+|+|+|||....|+++++. .|.+|+.++
T Consensus 568 GLafD~c~VGvVtNi~~~DHLG~~dInt~e~La~Vk~vv~e~V~pDG~AVLNA~DP~va~mA~~~~G----~i~YF~~~~ 643 (876)
T TIGR02068 568 GLAFDRCDVGVVTNIADGDHLGLGDINTIEDLADVKRVVVEVVKPDGYAVLNADDPMVAAMAEKCKG----KIAYFSMDP 643 (876)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCCCEEECCCCCHHHHHHHHCCC----CEEEEECCC
T ss_conf 5010321416898337766357886004788875101267888589827864788557999842896----189862186
Q ss_pred CCCCCCCC-----CCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 22222344-----2113465100124565--------4322122222222333322103567651012103455431147
Q gi|254781101|r 255 NADFQLRK-----WKQCSEQSWMEVQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 (472)
Q Consensus 255 ~ad~~~~~-----i~~~~~~~~~~~~~~~--------~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~ 321 (472)
+...-..+ .-..-+...+.+--.+ ...+++...--.||++|+|||+++++.+++|.|.|+++|+.|.
T Consensus 644 ~~~~~~~H~~~G~~avy~~~G~ivia~G~~~~~~~~~~~iPlT~GG~~~F~ieN~LAA~aAA~~~~v~ie~Ir~G~~tF~ 723 (876)
T TIGR02068 644 NNPTVAKHIAKGGRAVYYENGYIVIAKGGAEVAIARIAEIPLTMGGRVAFQIENALAAVAAAWALGVDIELIRAGIRTFK 723 (876)
T ss_pred CHHHHHHHHHCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 25899999855989999867879997478322678997288675771578888999999998534898999998987330
Q ss_pred ----CCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHH
Q ss_conf ----6644331010003653113310002565321012577787411102687138851235417105899999999998
Q gi|254781101|r 322 ----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 (472)
Q Consensus 322 ----~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~ 397 (472)
.-||||..|++. +...++| |.|||+|+++.+++.++++ .+||+.|+|.. ||+.++.=.++++.+.
T Consensus 724 ~d~~~~PGrfnLFn~~---~~~~lvD--Y~HNp~~~~av~~a~~~~~---A~rr~gV~ggp---GDR~De~l~~~G~~~g 792 (876)
T TIGR02068 724 ADAAQAPGRFNLFNLG---GAHVLVD--YGHNPAAIEAVVEAIRNLP---ARRRIGVIGGP---GDRRDEDLVKLGEILG 792 (876)
T ss_pred CHHHCCCCEEEEEECC---CCEEEEE--CCCCHHHHHHHHHHHHHCC---CCCEEEEEECC---CCCCHHHHHHHHHHHH
T ss_conf 1010689503222258---8289996--5779789999999996178---78478998078---7786588999999975
Q ss_pred HCCCCEEEEEC-----------CCHHHHHHHCCCCC-CEEEEC---CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 64998999988-----------03898998511379-799978---9899999999844789899997713254899999
Q gi|254781101|r 398 LYNISHVWLSG-----------FHVLALKDALPRSI-HVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 (472)
Q Consensus 398 ~~~~d~v~~~G-----------~~~~~~~~~~~~~~-~~~~~~---~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~ 462 (472)
. .||.|++.. +-..-+.+.+.+.. +...++ +--+|++...+.+.+||++||--- +.++.++
T Consensus 793 ~-~FD~i~~keD~~~rGkR~~G~a~~Ll~~G~~~~~~~~~~i~~i~de~~Ai~~~L~~~~~GdL~vi~~e---~~~~a~~ 868 (876)
T TIGR02068 793 G-AFDQIILKEDDDLRGKRARGEAAALLRQGLIQAAMRKAAIEEILDETEAIKAALDSLEAGDLVVILPE---SVERAIK 868 (876)
T ss_pred H-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHH
T ss_conf 4-06879996274535788873589999963530577656799998899999999842146886999702---1003566
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781101|r 463 LLLE 466 (472)
Q Consensus 463 ~L~~ 466 (472)
.+..
T Consensus 869 ~i~~ 872 (876)
T TIGR02068 869 LIEE 872 (876)
T ss_pred HHHH
T ss_conf 7665
No 32
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=100.00 E-value=2.3e-42 Score=299.51 Aligned_cols=186 Identities=36% Similarity=0.470 Sum_probs=167.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCC-CCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 830365420123346777752011222122110145741000123-2214443015664433211212232322025553
Q gi|254781101|r 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 (472)
Q Consensus 113 ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~-~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTN 191 (472)
||||||||||++|++++|+..|.++.+.||+|+.||+|++++++. .+++|+|+|+|+++.++ .+|..+.+|+++||||
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~P~iaviTN 79 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSFGLGE-GRLEGLAKPDIAVITN 79 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHCCCCCCCEEEEEC
T ss_conf 937586899999999999838998998388474577999997666469968999832777107-6552777899999945
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12101234445788886543310376221012101342468998752012333332222222222222344211346510
Q gi|254781101|r 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 (472)
Q Consensus 192 I~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~ 271 (472)
|++||||+|+|+|+|+++|.+||+++++++.+|+|.||+....+..... ..+++||.++++|++..++.....+..
T Consensus 80 i~~DHld~~~s~e~~~~~K~~i~~~~~~~g~~v~n~Dd~~~~~~~~~~~----~~~~t~g~~~~~d~~~~~i~~~~~~~~ 155 (188)
T pfam08245 80 ISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPELAKRLKNAG----AKVITFGLENEADDRAANIYVSSEGGK 155 (188)
T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCC----CCEEEEECCCCCCEEEEEEEECCCCCE
T ss_conf 7655646621799999999999972999999999898888999998669----846998568765604467899589968
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 012-45654322122222222333322103567
Q gi|254781101|r 272 MEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 (472)
Q Consensus 272 ~~~-~~~~~~~~~~l~~~G~hnv~NalaAia~~ 303 (472)
|.+ ..++...++.++++|+||++|+++|+++|
T Consensus 156 ~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188)
T pfam08245 156 IVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 (188)
T ss_pred EEEEECCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 999962993899998866399999999999959
No 33
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=100.00 E-value=1.4e-37 Score=267.81 Aligned_cols=397 Identities=23% Similarity=0.293 Sum_probs=280.8
Q ss_pred HHHHHHHCCEEECCCCCCEEEEEEEECCCCCC--CCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE
Q ss_conf 88998727999526887147467740222378--9888971688747688899999869889998552124554469728
Q gi|254781101|r 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 (472)
Q Consensus 8 ~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~--g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~ 85 (472)
+++++..|-+++.+ ||.-++.| .|++|- =-...-|++-++..++++-.++ .-|+
T Consensus 38 ST~LE~~GIe~~~g----------fD~~QL~~~~pD~~vi-GNa~~RG~p~VE~vL~~nl~Y~-------------SGPQ 93 (459)
T TIGR01081 38 STLLEAQGIEIIEG----------FDAAQLEPFKPDLVVI-GNAMKRGNPCVEAVLEKNLPYT-------------SGPQ 93 (459)
T ss_pred HHHHHHCCCEEECC----------CCHHHCCCCCCCEEEE-CCCCCCCCHHHHHHHHCCCCCC-------------CCCC
T ss_conf 68887557303227----------7844400348887998-4633167446789872689502-------------1751
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCCHHHHHCCCCCCCHHCC-----
Q ss_conf 99599899999999999830699399983036542012334677775201-----12221221101457410001-----
Q gi|254781101|r 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-----TYACIGSYNNHIGVPLTLAR----- 155 (472)
Q Consensus 86 i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~-----~~~t~gn~Nn~iGvpltll~----- 155 (472)
+.-+..+ | +--|+||.||+|||||+.|++++|+..|- +-+-+||| |+.--|=+
T Consensus 94 WL~d~~L----------~---drWVlaV~GTHGKTTT~~M~~WvLE~~G~~pGFliGGv~gNF----gvSArLg~~pr~d 156 (459)
T TIGR01081 94 WLHDFVL----------R---DRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF----GVSARLGETPRQD 156 (459)
T ss_pred HHHHHHH----------H---CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCC----CEEEECCCCCCCC
T ss_conf 0563342----------1---342789507886046889999999863798872673424534----2142068775667
Q ss_pred CCCCCHHHHHCCCCCCCC--CCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHH
Q ss_conf 232214443015664433--211212232--3220255531210123444578888654331037622101210134246
Q gi|254781101|r 156 MPVDVDFGIFELGMSHLG--EIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 (472)
Q Consensus 156 ~~~~~~~~V~E~g~~~~g--ei~~L~~i~--~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~ 231 (472)
-+...+|+|+|.- ... =.++-++++ +|...|+.|+..||-|.|.+++.|.+..-.|++.+|..|.+|.|..+..
T Consensus 157 p~~~S~fFviEAD--EYD~AFFDKRSKFVHY~PRTlvlNNleFDHADIFddL~AI~~QFHhlvR~vP~~G~i~~~~~~~~ 234 (459)
T TIGR01081 157 PNSQSPFFVIEAD--EYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILAPERDQS 234 (459)
T ss_pred CCCCCCEEEEECC--CCCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCHHHH
T ss_conf 4546875799535--65651002543312027600145155544455787689987403068896468864843501468
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89987520123333322222222222223442113465100124565432-21222222223333221035676510121
Q gi|254781101|r 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310 (472)
Q Consensus 232 ~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~ 310 (472)
++....+-++.... .+| ++..|++..+ ..+++.|.+-..|+.. ++++.+.|+||..|+|+|+|+++..|+++
T Consensus 235 l~~~l~~GCWs~~e---~~G--~~~~W~A~~~--~~D~S~f~Vll~G~~vg~VkW~lvG~HN~~NaL~aIAAArHvGV~~ 307 (459)
T TIGR01081 235 LKDTLAKGCWSEQE---FLG--EQGEWQAEKI--TADASEFEVLLDGEKVGEVKWSLVGEHNMHNALMAIAAARHVGVAI 307 (459)
T ss_pred HHHHHHHCCCCCHH---CCC--CCCCHHHHHH--CCCCHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 99998606872011---246--7775057654--0451000220178436776533304600135899998742167687
Q ss_pred HHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEC----CHHHCCCCHH
Q ss_conf 034554311476644331010003653113310002565321012577787411102687138851----2354171058
Q gi|254781101|r 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMGELSQ 386 (472)
Q Consensus 311 ~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG----~m~ELG~~~~ 386 (472)
+...++|-.|.-.+ +|+|++.+.|+++++|| +-++|+++.+.|..|++- .-...|.++||= .|+ ||-..+
T Consensus 308 ~~Ac~ALG~F~N~k---RRlE~kG~~Ng~TVYDD-FAHHP~AI~~Tl~~LR~k-VGG~~rIlAVLEPRSnTMK-lG~~K~ 381 (459)
T TIGR01081 308 EDACEALGSFVNAK---RRLELKGEANGVTVYDD-FAHHPTAIEATLAALRDK-VGGGARILAVLEPRSNTMK-LGVHKD 381 (459)
T ss_pred HHHHHHHCCCCCCC---EEEEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCC-CCCCHH
T ss_conf 89998703200120---01567211313787327-667868999999998752-3997069998778744100-343255
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-HHH-HHHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999999999986499899998803-898-9985113-7979997898999999998447898999977132548999999
Q gi|254781101|r 387 SFHIDLAEVLSLYNISHVWLSGFH-VLA-LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 (472)
Q Consensus 387 ~~h~~i~~~~~~~~~d~v~~~G~~-~~~-~~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~ 463 (472)
. +...+. ..|.||++-.. ..+ .++.+.. ..+..+-.+++++++.+.+.++++|-|||. ||| .|+-|.++
T Consensus 382 ~----la~sL~--~AD~Vf~~~p~~~~W~V~e~~~~~~~p~~~~~~~D~~v~~ivk~A~~gD~ILVM-SNG-gFgGIH~K 453 (459)
T TIGR01081 382 D----LAPSLG--RADEVFLLQPEQIPWEVAEVAEQCVQPANVSADLDELVAMIVKEAQPGDHILVM-SNG-GFGGIHGK 453 (459)
T ss_pred H----HHHHHH--HCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECC-CCCHHHHH
T ss_conf 6----667666--003565316898870599999860240211010789999999605888758997-468-86406899
Q ss_pred HHHHC
Q ss_conf 99850
Q gi|254781101|r 464 LLEEF 468 (472)
Q Consensus 464 L~~~~ 468 (472)
|++++
T Consensus 454 lL~~L 458 (459)
T TIGR01081 454 LLDAL 458 (459)
T ss_pred HHHHC
T ss_conf 99852
No 34
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-35 Score=251.59 Aligned_cols=331 Identities=21% Similarity=0.296 Sum_probs=223.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCCH--HHHHCCC---CCCCH-----------------------
Q ss_conf 306993999830365420123346777752011---2221--2211014---57410-----------------------
Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACI--GSYNNHI---GVPLT----------------------- 152 (472)
Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~---~~t~--gn~Nn~i---Gvplt----------------------- 152 (472)
.+..+++|.|+|||||.||+.|+.+||.+.|-. +.|| -+||-.| |-|++
T Consensus 40 P~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~~~~~ 119 (427)
T COG0285 40 PQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLDLISL 119 (427)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 72149869993789842499999999997598714678876076421799999988899999999999997523666787
Q ss_pred -HCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCC
Q ss_conf -001----------2322144430156644332112122323220255531210123444-5788886543310376221
Q gi|254781101|r 153 -LAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220 (472)
Q Consensus 153 -ll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~ 220 (472)
.++ .+.+.|++|+|+|+. |..+. ++++.|.+++||+|+.||.+++| |+|.|+.||+.|++.-.|
T Consensus 120 T~FE~~Ta~Af~~F~~~~vD~aIlEVGLG--GRlDA-TNVi~p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P- 195 (427)
T COG0285 120 TYFEVLTAMAFLYFAEAKVDVAILEVGLG--GRLDA-TNVIEPDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKP- 195 (427)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCCC-HHCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-
T ss_conf 47999999999999768999899960556--66443-221687668976647257888686699999986401257995-
Q ss_pred CHHHHCC-CCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 0121013-424-6899875201233333222222222222234421134651001245654322122222222-333322
Q gi|254781101|r 221 GTIFLNY-DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH-MAQNML 297 (472)
Q Consensus 221 g~~ViN~-Dd~-~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~h-nv~Nal 297 (472)
+|+-. +.| ....+.+++...... +..++. ++.... .+..|.+...+....+.+|++|.| |+.|+.
T Consensus 196 --~v~~~~~~p~a~~vi~~~a~~~~~~-~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa 263 (427)
T COG0285 196 --AVIGEQQPPEALNVIAERAEELGAP-LFVLGP----DFQVLE-----EGNGFSFQGGGGLLDLPLPLLGGHHQIENAA 263 (427)
T ss_pred --EEECCCCCHHHHHHHHHHHHHCCCC-EEECCC----CHHHCC-----CCCEEEEECCCEEEEECCCCCCCCHHHHHHH
T ss_conf --7988889878999999998751897-465173----322104-----6526887337704554166566305788899
Q ss_pred CHHHHHHHHCC--CCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 10356765101--2103455431147664433101000365311331000256532101257778741110268713885
Q gi|254781101|r 298 MTLGIVSILTA--DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 (472)
Q Consensus 298 aAia~~~~lGi--~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~Vl 375 (472)
.|++++..++. +.+.|.++|++.. +|||+|++.. +...++|-. +||+|+++..++|+......+ +.++|+
T Consensus 264 ~Ai~al~~l~~~i~~~~i~~gl~~~~-wpGR~e~l~~----~p~i~lDgA--HNp~aa~~La~~l~~~~~~~~-~~~~v~ 335 (427)
T COG0285 264 LAIAALEALGKEISEEAIRKGLANVD-WPGRLERLSE----NPLILLDGA--HNPHAARALAETLKTLFNDRP-RLTLVF 335 (427)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCC-CCCEEEEECC----CCEEEEECC--CCHHHHHHHHHHHHHHHCCCC-CEEEEE
T ss_conf 99999998314288999999998676-8733788337----974999888--999999999999997733577-528999
Q ss_pred CCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC------CHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1235417105899999999998649989999880------3898998511379799978989999999984478989999
Q gi|254781101|r 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 (472)
Q Consensus 376 G~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~------~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLi 449 (472)
|.+ .++.+..+.+.+... .+.+++... ....+.+......... .++.+++++.+.+....+|.|||
T Consensus 336 g~l------~dKd~~~~l~~L~~~-~~~~~~~~~~~~ra~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~ilV 407 (427)
T COG0285 336 GML------KDKDIAGMLAALLPI-VDEIYTTPLPWPRALDAEELLAFAGERGGVE-LDDVAEALELALEKADEDDLVLV 407 (427)
T ss_pred EEE------CCCCHHHHHHHHHCC-CCEEEECCCCCCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 832------588889999974064-7689982589735489999999987635785-00399999999971579974999
Q ss_pred ECCCHHHHHHHHHHHHHH
Q ss_conf 771325489999999985
Q gi|254781101|r 450 KSSNSCGFYRLINLLLEE 467 (472)
Q Consensus 450 KGSr~~~le~iv~~L~~~ 467 (472)
.||-.. ...+.+.+.++
T Consensus 408 ~GSly~-~~ev~~~~~~~ 424 (427)
T COG0285 408 TGSLYL-AGEVLELLKKR 424 (427)
T ss_pred EECHHH-HHHHHHHHHCC
T ss_conf 823999-99999996335
No 35
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=3.5e-35 Score=251.99 Aligned_cols=323 Identities=18% Similarity=0.173 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---CH--HHHHCCC---CCC-----------
Q ss_conf 9899999999999830699399983036542012334677775201122---21--2211014---574-----------
Q gi|254781101|r 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CI--GSYNNHI---GVP----------- 150 (472)
Q Consensus 90 d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~--gn~Nn~i---Gvp----------- 150 (472)
.+++.|.+|+. .+...++|.|+|||||.||+.|++++|++.|..++ || -+||-.| |.|
T Consensus 34 ri~~ll~~lg~---p~~~~~~IhVaGTNGKGSt~~~l~~il~~~G~~vG~ftSPHl~~~~ERi~ing~~Is~~~~~~~~~ 110 (416)
T PRK10846 34 RVSQVAARLDV---LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRVQGQELPESAHTASFA 110 (416)
T ss_pred HHHHHHHHCCC---CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 99999997299---865799899968855799999999999987997307788867951015679991289899999999
Q ss_pred ----------CHHCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHH
Q ss_conf ----------10001----------2322144430156644332112122323220255531210123444-57888865
Q gi|254781101|r 151 ----------LTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209 (472)
Q Consensus 151 ----------ltll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~e~i~~~ 209 (472)
+|.++ .+.+.|++|+|+|+.+ ..+. ++++.|+++|||||+.||++++| |+|+|+.|
T Consensus 111 ~v~~~~~~~~lT~FE~~T~~A~~~F~~~~vD~aVlEvGLGG--rlDA-TNvi~~~vsvIT~IglDH~~~LG~Tle~IA~E 187 (416)
T PRK10846 111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG--RLDA-TNIVDADVAVITSIALDHTDWLGPDRESIGRE 187 (416)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCE--EEHH-HCCCCCCEEEECCCCHHHHHHHCCCHHHHHHH
T ss_conf 98875068887699999999999998569998999835751--3432-13888877998870476420017999999998
Q ss_pred HHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43310376221012101342468998752012333332222222222222344211346510012456543221222222
Q gi|254781101|r 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 (472)
Q Consensus 210 K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G 289 (472)
|+.|++ ++..+|+. +......+.+.+...+. .++.++. |+.. ...+..+.+......+ -.+++ +
T Consensus 188 KAGIik---~g~pvV~g-~~~~~~~i~~~a~~~~a-~l~~~~~----d~~~-----~~~~~~~~~~~~~~~~-~~l~l-~ 251 (416)
T PRK10846 188 KAGIFR---SEKPAVVG-EPEMPSTIADVAQEKGA-LLQRRGV----DWNY-----SVTDHDWAFSDGDGTL-ENLPL-P 251 (416)
T ss_pred HHHHHC---CCCEEEEC-CCCHHHHHHHHHHHCCC-CEEECCC----CEEE-----EECCCEEEEECCCCCC-CCCCC-C
T ss_conf 753422---79808985-85378999999997099-7798178----4079-----8538737997588625-24888-6
Q ss_pred CCCCCCCCCHHHHHHHHC--CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 223333221035676510--121034554311476644331010003653113310002565321012577787411102
Q gi|254781101|r 290 YHMAQNMLMTLGIVSILT--ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 (472)
Q Consensus 290 ~hnv~NalaAia~~~~lG--i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~ 367 (472)
.++..|+..|+++...++ ++.+.+.++|.+.. +|||+|++. .+...++|-+ |||+++++..++++.+..
T Consensus 252 ~~~~~Naa~Al~al~~~~~~i~~~~i~~gL~~~~-wpGR~e~i~----~~p~iiLDgA--HN~~aa~~L~~~l~~~~~-- 322 (416)
T PRK10846 252 NVPQPNAATALAALRASGLEVSENAIRDGIASAI-LPGRFQIVS----ESPRVIFDVA--HNPHAAEYLTGRLKALPK-- 322 (416)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-CCCCEEEEC----CCCCEEEECC--CCHHHHHHHHHHHHHCCC--
T ss_conf 5799999999999997399999999999998577-787512414----7985777778--599999999999996077--
Q ss_pred CCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC------CHHHHHHHCCCCCCEEEECCHHHHHHHHHHHC
Q ss_conf 687138851235417105899999999998649989999880------38989985113797999789899999999844
Q gi|254781101|r 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 (472)
Q Consensus 368 ~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~------~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~ 441 (472)
.+|.++|+|-| .++.+..+.+.+... +|.++++.. ....+.+.+.. ...+++.+++++.+.+..
T Consensus 323 ~~k~~~V~g~l------~dKD~~~~l~~L~~~-~d~~~~~~~~~~Ra~~~~~L~~~l~~---~~~~~~~~~A~~~al~~a 392 (416)
T PRK10846 323 NGRVLAVIGML------HDKDIAGTLAWLKSV-VDDWYCAPLEGPRGATAEQLLEHLGN---GKSFDSVAQAWDAAMADA 392 (416)
T ss_pred CCCEEEEEECC------CCCCHHHHHHHHHHH-CCEEEEECCCCCCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHC
T ss_conf 99689998413------789999999986644-68999958999777999999998602---766699999999999847
Q ss_pred CCCCEEEEECCC
Q ss_conf 789899997713
Q gi|254781101|r 442 VDGDVVVVKSSN 453 (472)
Q Consensus 442 ~~gdiVLiKGSr 453 (472)
+++|+|||.||-
T Consensus 393 ~~~d~IlV~GSl 404 (416)
T PRK10846 393 KPEDTVLVCGSF 404 (416)
T ss_pred CCCCEEEEECHH
T ss_conf 999859997139
No 36
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=100.00 E-value=1.2e-33 Score=241.81 Aligned_cols=350 Identities=20% Similarity=0.251 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-HHHHCCC---CCH--HHHHCCC---CCCCH---------
Q ss_conf 8999999999998306993999830365420123346777-7520112---221--2211014---57410---------
Q gi|254781101|r 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTY---ACI--GSYNNHI---GVPLT--------- 152 (472)
Q Consensus 91 ~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL-~~~~~~~---~t~--gn~Nn~i---Gvplt--------- 152 (472)
.++.|..|+.-..+.-..|+|.|+|||||.||..||++|| +..|-.+ .|| -.||-.| |.|++
T Consensus 4 ~~~ll~~LG~P~~~~~a~~~IHVaGTNGKGST~a~l~~iL~~~~G~~VG~fTSPHl~~f~ERI~~nG~~i~d~~~~~~~~ 83 (460)
T TIGR01499 4 MKKLLEALGNPHQDLNALPVIHVAGTNGKGSTCAFLESILREAAGYKVGLFTSPHLVSFNERIRVNGEPISDEELAQAFE 83 (460)
T ss_pred HHHHHHHCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEECCEECCHHHHHHHHH
T ss_conf 88999970887379248977999720687589999999988753977888873738742234789885768899999999
Q ss_pred -------------------------HCC----CC-CCCHHHHHCCCCCCCCCCCCCCCCCC-CCEEEEEEECCCHHHHHH
Q ss_conf -------------------------001----23-22144430156644332112122323-220255531210123444
Q gi|254781101|r 153 -------------------------LAR----MP-VDVDFGIFELGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFS 201 (472)
Q Consensus 153 -------------------------ll~----~~-~~~~~~V~E~g~~~~gei~~L~~i~~-P~iaiiTNI~~dHld~~~ 201 (472)
++. .+ ..+|++|+|+|+. |+.|. ++++. |.+++||+|+.||.+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~t~FE~~T~~Af~~F~~~~~vd~av~EVGlG--GrlDa-TNv~~~p~~~~iT~ig~DH~~~LG 160 (460)
T TIGR01499 84 QVRPILKKLSQETEYSQPTFFELLTLLAFLYFAQLAQVDVAVLEVGLG--GRLDA-TNVVEKPLVSVITSIGLDHTEILG 160 (460)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCCC-CCCCCCCEEEEECCCCHHHHHHHC
T ss_conf 999987533101358777789999999999999850882899987376--54455-441138637997277768886505
Q ss_pred -HHHHHHHHHHHHCCCCCCCCHHHHCC-CC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -57888865433103762210121013-42-4689987520123333322222222222223442113465100124565
Q gi|254781101|r 202 -GIEEIASAKAEIFEGLEKTGTIFLNY-DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 (472)
Q Consensus 202 -s~e~i~~~K~~i~~~l~~~g~~ViN~-Dd-~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~ 278 (472)
|+++||.+|+.|++.-.| +|+.. +. +....+.+++...+...++.++. ++.+........+..+.+....
T Consensus 161 ~t~~~IA~eKAGI~k~g~P---~v~~~~~~~ea~~v~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~~g~~~~~~~~~ 233 (460)
T TIGR01499 161 DTLEEIAWEKAGIIKEGVP---IVTGEVQEPEALEVLKKKAEEKGAAPLQVVGK----DFDIKEKDENLNGEKFSFSGEN 233 (460)
T ss_pred CCHHHHHHHHHHHHCCCCC---EEEECCCCHHHHHHHHHHHHHHCCCEEEEECC----CCCCCCCCCCCCCCEEEECCCC
T ss_conf 3379999974576216765---68714886689999999999716860465034----1322111122465212223555
Q ss_pred C-CCCC--CCCCCCCCCCCCCCCHHHHHHHHC------CCCHHHH-HHHHCCCCCCCCCCCCEECCCC---CCEEEEEEC
Q ss_conf 4-3221--222222223333221035676510------1210345-5431147664433101000365---311331000
Q gi|254781101|r 279 K-SMEV--VHHGIGYHMAQNMLMTLGIVSILT------ADVDTAI-KALSVFHPKEGRGKRYRCALNQ---GFFTLIDES 345 (472)
Q Consensus 279 ~-~~~~--~l~~~G~hnv~NalaAia~~~~lG------i~~~~i~-~~L~~~~~~~GR~~~~~~~~~~---~~~~iIDDs 345 (472)
. ...+ .++++|.|++.|+..|+.++..++ ++...++ +||.+.. +|||+|+++..... +...+||-+
T Consensus 234 ~~~~~~~~~~~L~G~~Q~~Na~~A~~~~~~l~~~~~~~~~~~~~~~~GL~~~~-wpGR~e~~~~~~~~~~~~p~~~lDGA 312 (460)
T TIGR01499 234 LFLEPLLAKLSLLGDHQAENAALALAALEVLGKQSSEKLSEAAIRSEGLASTI-WPGRLEILSEDKDAKAANPNILLDGA 312 (460)
T ss_pred CCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHCCCEEEEECC
T ss_conf 42100135556567999999999999999850235666676678889888511-12201133035412233871799527
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC----E-EEEECCC------HHHH
Q ss_conf 256532101257778741110268713885123541710589999999999864998----9-9998803------8989
Q gi|254781101|r 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS----H-VWLSGFH------VLAL 414 (472)
Q Consensus 346 YNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d----~-v~~~G~~------~~~~ 414 (472)
|||+|++++.++++. ......+..+|+|-+. ++....+...+... ++ . +++.... ...+
T Consensus 313 --HNp~~~~~l~~~~~~-~~~~~~~~~~~~~~l~------~Kd~~~~l~~L~~~-~~~i~~~~~~~~~~~~~~a~~~~~~ 382 (460)
T TIGR01499 313 --HNPHSAEALVEWLKE-KEFNGRPITLLFGALA------DKDAAAMLALLREL-VPKIFEEIVYVTPFDYPRALDAADL 382 (460)
T ss_pred --CCHHHHHHHHHHHHH-HHHCCCCCEEEEEECC------CCCHHHHHHHHHHH-HHHHHCEEEEECCCCCCCCCCHHHH
T ss_conf --687899999999999-8626997188886113------68878998887874-3565221768617786233675789
Q ss_pred HHHCCCCC-C-----EEEECCHHHHHHHH---------------------HH--HCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 98511379-7-----99978989999999---------------------98--44789899997713254899999999
Q gi|254781101|r 415 KDALPRSI-H-----VHYSETMDGLFLFI---------------------QS--SLVDGDVVVVKSSNSCGFYRLINLLL 465 (472)
Q Consensus 415 ~~~~~~~~-~-----~~~~~~~e~a~~~l---------------------~~--~~~~gdiVLiKGSr~~~le~iv~~L~ 465 (472)
.+...... . ....++..++++.. ++ ....++.|||.||.. +|-.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lVtGSly-----Lvg~v~ 457 (460)
T TIGR01499 383 EAAAEAFGSEELEKAAETVSSWREALELAEKLDEAQKVSALIEIAYLLVALEKEKAKADDLILVTGSLY-----LVGEVR 457 (460)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHH-----HHHHHH
T ss_conf 999974054156677876730899997166787655102457789888888750567677378872599-----999999
Q ss_pred H
Q ss_conf 8
Q gi|254781101|r 466 E 466 (472)
Q Consensus 466 ~ 466 (472)
+
T Consensus 458 ~ 458 (460)
T TIGR01499 458 K 458 (460)
T ss_pred H
T ss_conf 8
No 37
>KOG2525 consensus
Probab=99.89 E-value=1.8e-21 Score=161.27 Aligned_cols=323 Identities=19% Similarity=0.176 Sum_probs=192.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCCHH--HHHCCC---CCCCH---------
Q ss_conf 98999999999998306993999830365420123346777752011---22212--211014---57410---------
Q gi|254781101|r 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIG--SYNNHI---GVPLT--------- 152 (472)
Q Consensus 90 d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~---~~t~g--n~Nn~i---Gvplt--------- 152 (472)
..++.|..++-- -++.+..||.|+||+||.||..++.+||++.|.. +.||- +-.-.| |.|+|
T Consensus 55 ~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~ 133 (496)
T KOG2525 55 RMRKLLERLGNP-EDQNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFW 133 (496)
T ss_pred HHHHHHHHHCCH-HHHHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHEEEECCEECCHHHHHHHHH
T ss_conf 999999970986-5443224799823789864589899999842636632268001553245888998789999999999
Q ss_pred ------------------------HCC----CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HH
Q ss_conf ------------------------001----2322144430156644332112122323220255531210123444-57
Q gi|254781101|r 153 ------------------------LAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203 (472)
Q Consensus 153 ------------------------ll~----~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~ 203 (472)
++. ..+++|++|+|+|+. |+.+...-|-+|-++.||+|+-||++.+| ++
T Consensus 134 ~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlG--G~~DaTNvI~kpvvcgITslG~DH~~~LG~tL 211 (496)
T KOG2525 134 EVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLG--GELDATNVIEKPVVCGITSLGLDHTSFLGNTL 211 (496)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEECCCCEEEEEECCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9999887763065678735556675442015555886899984356--66566533136458998405775288886589
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88886543310376221012101342468998752012333332222222222222344211346510012456543221
Q gi|254781101|r 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 (472)
Q Consensus 204 e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~ 283 (472)
++|+.+|+.||+.-.|-. ....++...+.+.+++.......-+ ..+ .....+ -..
T Consensus 212 ~eIA~eKAGIfK~gvpaf--t~~q~~e~~nvL~~ra~e~~~~L~~---v~p--------------~~~~~l------s~~ 266 (496)
T KOG2525 212 SEIAWEKAGIFKEGVPAF--TVPQPPEALNVLKERASELGVPLFV---VPP--------------LEAYEL------SGV 266 (496)
T ss_pred HHHHHHHCCCCCCCCCEE--ECCCCHHHHHHHHHHHHHCCCCCEE---CCC--------------CHHHHH------CCC
T ss_conf 999887446240588548--7588578899999988733788355---388--------------146550------487
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHH----C---------------CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE
Q ss_conf 22222222333322103567651----0---------------1210345543114766443310100036531133100
Q gi|254781101|r 284 VHHGIGYHMAQNMLMTLGIVSIL----T---------------ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472)
Q Consensus 284 ~l~~~G~hnv~NalaAia~~~~l----G---------------i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472)
.+.+.|.|+..|+..|+.++... | ++ +....||.++. +|||.|+++. +.+...++|.
T Consensus 267 ~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~GL~~~~-wPGR~qil~~--~~~~~~llDG 342 (496)
T KOG2525 267 NLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIP-PAFLSGLASTD-WPGRLQILEY--GRGVTWLLDG 342 (496)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-HHHHCCHHHCC-CCCCEEEEEC--CCCCEEEECC
T ss_conf 654006513443578988899999863850105787322366789-89961203245-7870689862--8985799658
Q ss_pred CCCCCCCCHHHHHHHHHH-HHHCCCCC-CEEEECCHHHCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCC-------
Q ss_conf 025653210125777874-11102687-1388512354171058999999999986-----499899998803-------
Q gi|254781101|r 345 SYNANPASMKAAISVLSQ-ISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSL-----YNISHVWLSGFH------- 410 (472)
Q Consensus 345 sYNAnP~S~~aal~~l~~-~~~~~~~r-~i~VlG~m~ELG~~~~~~h~~i~~~~~~-----~~~d~v~~~G~~------- 410 (472)
+ +||+||+++-+.++. ++...+.+ +|+++-.| |++... .+.+.+.. ..++.|+++.-.
T Consensus 343 A--Ht~eSaea~~~w~~~~~~~~~~~~~~illfn~t---~~~d~~---~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~ 414 (496)
T KOG2525 343 A--HTKESAEACAKWFRKAVRGLKKLTSLILLFNCT---SDRDPP---LLLPLLKPDAVIGTRFSSVVFMPNITSSSPVG 414 (496)
T ss_pred C--CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC---CCCCHH---HHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 9--998999999999999853677765269999803---776647---67677454654344514178524431158766
Q ss_pred HH-----------HH------H----HHCC----CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89-----------89------9----8511----379799978989999999984478989999771
Q gi|254781101|r 411 VL-----------AL------K----DALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472)
Q Consensus 411 ~~-----------~~------~----~~~~----~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472)
.. .+ . +... .......+.++..|.+.+....+.-+-+.|.||
T Consensus 415 ~~d~~~~~~s~~~~l~~q~~L~~~w~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~gs 481 (496)
T KOG2525 415 SADSISLNTSTEEQLNWQNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDDQHLSPRIEVLGS 481 (496)
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 6455415677268777758999999998655887313236734599999999842777770899988
No 38
>pfam01225 Mur_ligase Mur ligase family, catalytic domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=99.71 E-value=5.9e-17 Score=131.39 Aligned_cols=76 Identities=34% Similarity=0.350 Sum_probs=67.8
Q ss_pred EEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 474677402223789888971688747688899999869889998552124554469728995998999999999998
Q gi|254781101|r 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472)
Q Consensus 26 ~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472)
+|+++++|||++++|++|||++|.++|||+|+++|+++||.+++++.... ....++|+|.|+|++++|+++|+.++
T Consensus 1 eI~~i~~dSr~v~~g~lF~a~~G~~~dG~~fi~~a~~~GA~ai~~~~~~~--~~~~~~~~i~v~d~~~aL~~la~~fy 76 (76)
T pfam01225 1 EIHFIGIDSRGMSPGALFLALKGYRVDGSDFAESAIALGAVAVVSSAIPR--DPNPEVPGIPVIDRREALAELAARFY 76 (76)
T ss_pred CCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCEEEECCHHHHHHHHHHHHC
T ss_conf 90658878772799999998077867999999999980998999936545--67999739998999999999999769
No 39
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=99.00 E-value=1.2e-09 Score=83.15 Aligned_cols=78 Identities=28% Similarity=0.375 Sum_probs=61.8
Q ss_pred CCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 64433101000365311331000256532101257778741110268713885123541710589999999999864998
Q gi|254781101|r 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472)
Q Consensus 323 ~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472)
+|||||++.. .+++++|+| |++||+||+++|++++++ ..+|+|+|+|.| |++..+.|.++++.+... .|
T Consensus 1 vpGR~e~i~~---~~~~~vi~D-yaHnp~~~~a~l~~~~~~---~~~r~i~V~G~~---g~r~~~~r~~~g~~a~~~-ad 69 (87)
T pfam02875 1 VPGRLEVVGE---NNGVLVIDD-YAHNPDALEAALQALKEL---FDGRLILVFGAG---GDRDAEFHALLGALAAAL-AD 69 (87)
T ss_pred CCCCCEEEEC---CCCCEEEEE-CCCCHHHHHHHHHHHHHC---CCCCEEEEECCC---CCCCHHHHHHHHHHHHHC-CC
T ss_conf 9997389865---899789996-789969999999999862---688789999998---888678999999999971-99
Q ss_pred EEEEECCCH
Q ss_conf 999988038
Q gi|254781101|r 403 HVWLSGFHV 411 (472)
Q Consensus 403 ~v~~~G~~~ 411 (472)
.|++.+++.
T Consensus 70 ~viit~~~p 78 (87)
T pfam02875 70 VVILTGDYP 78 (87)
T ss_pred EEEECCCCC
T ss_conf 999999889
No 40
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.15 E-value=2.6e-05 Score=54.41 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf 43567889987279995268871474677402223789888971688747688899999869889998552124554469
Q gi|254781101|r 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 (472)
Q Consensus 3 ~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~ 82 (472)
|-+||+|||+.++|++.+ +++..|++++ +-.+.++++|=|+- ..+|++.+.+-.|+++|+.++..... +.+
T Consensus 1 ~s~tL~eIA~~lgg~l~G-d~d~~I~gva-~l~~A~~~~IsF~~------~~ky~~~L~~tkAsavIv~~~~~~~~-~~~ 71 (343)
T PRK00892 1 PSLTLAELAEQLGAELHG-DGDIEITGLA-PLDEAGPGQLSFLD------NPKYRKQLKDTQAGAVIVSPDDAEKV-PAH 71 (343)
T ss_pred CCCCHHHHHHHHCCEEEC-CCCCEEECCC-CHHHCCCCCEEEEE------CHHHHHHHHCCCCEEEEECHHHHHHC-CCC
T ss_conf 963199999975999977-9982796454-96668998099995------88888887557874999547888557-588
Q ss_pred CCEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 728995998999999999998306
Q gi|254781101|r 83 IPVFGVDDVLGALNKLAVAARLRS 106 (472)
Q Consensus 83 ~~~i~v~d~~~al~~la~~~~~~~ 106 (472)
.++|.|+||+.++.++...++.+.
T Consensus 72 ~~~Iiv~nP~~afaki~~lF~~~~ 95 (343)
T PRK00892 72 RAALVVKNPYLAFARVAQLFDTPP 95 (343)
T ss_pred CCEEEECCHHHHHHHHHHHHCCCC
T ss_conf 738998998999999999746764
No 41
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=96.96 E-value=0.004 Score=39.92 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf 43567889987279995268871474677402223789888971688747688899999869889998552124554469
Q gi|254781101|r 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 (472)
Q Consensus 3 ~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~ 82 (472)
+.++|+||++.+++++.+.. +..++++.-=. +..+++++|. |+-+|.++...-.|.+++++..... .....
T Consensus 2 ~~~~l~~la~~~~~e~~g~~-~~~i~~va~l~-~a~~~~i~f~------~~~ky~~~l~~s~Agaviv~~~~~~-~~~~~ 72 (338)
T COG1044 2 PSYTLAELAQQLGAELRGDG-DRVITGVAPLD-EAQPGDISFL------ANPKYRKELKTSRAGAVIVSAKDAA-FAPAK 72 (338)
T ss_pred CCCHHHHHHHHHCCEEECCC-CEEEECCCHHH-HCCCCCCEEE------CCHHHHHHCCCCCCCEEEECHHHHH-CCCCC
T ss_conf 52009999975183882578-42562013244-4484451562------2733343112376758995589972-06668
Q ss_pred CCEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 7289959989999999999983069
Q gi|254781101|r 83 IPVFGVDDVLGALNKLAVAARLRSK 107 (472)
Q Consensus 83 ~~~i~v~d~~~al~~la~~~~~~~~ 107 (472)
.+.+.+.||..+++.++..+...++
T Consensus 73 ~~~Lv~~~P~~~fA~~~~~f~~~~~ 97 (338)
T COG1044 73 KNALVVKDPYLAFAKVAQLFYRPFN 97 (338)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 7089948806789999988514776
No 42
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=96.04 E-value=0.036 Score=33.55 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred HHHHHHCCEEECC-CCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 8998727999526-887147467740222378988897168874768889999986988999855212455446972899
Q gi|254781101|r 9 DLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 (472)
Q Consensus 9 ~l~~~~~g~~~~~-~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~ 87 (472)
||++.++++|-+. .-|..|++++.= .+.++.+|=|+- .-+|.+++.+..|.+++++++..........+.|.
T Consensus 1 ela~~~~~El~g~a~g~~~i~~v~~l-~~A~~~~itF~~------n~K~~~~l~~~~AgAv~~~~~~~~~~~~~~~~~L~ 73 (336)
T TIGR01853 1 ELAERLGAELKGDAEGDIKISGVAPL-EKAKAEHITFLA------NPKYLKELKSSKAGAVIVSADDQSKLVPKKCAALV 73 (336)
T ss_pred CCHHHCCCEEECCCCCCEEEEEECCC-CCCCCCCEEEEC------CHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCEEE
T ss_conf 90442085023566676688530763-358802266533------80478765157740799715661785523250578
Q ss_pred ECCHHHHHHHHHHHHHHCCCC
Q ss_conf 599899999999999830699
Q gi|254781101|r 88 VDDVLGALNKLAVAARLRSKA 108 (472)
Q Consensus 88 v~d~~~al~~la~~~~~~~~~ 108 (472)
|+||..++++++.++..+.+.
T Consensus 74 v~~P~l~fA~~~~~F~~~~~~ 94 (336)
T TIGR01853 74 VKDPYLAFAKVAELFDPPPKR 94 (336)
T ss_pred ECCCHHHHHHHHHHHCCCCCC
T ss_conf 178179999999860887650
No 43
>PRK05439 pantothenate kinase; Provisional
Probab=95.26 E-value=0.017 Score=35.82 Aligned_cols=27 Identities=48% Similarity=0.594 Sum_probs=23.1
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 939998303--654201233467777520
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+-||||||| .||+||+.+|..+|+.-.
T Consensus 86 PfIIGIaGSVAVGKSTtARlLq~LL~r~~ 114 (312)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWP 114 (312)
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 98999762010262889999999995078
No 44
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] - UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins.
Probab=95.06 E-value=0.11 Score=30.43 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=50.9
Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 714746774022237898889716887476888999998698899985521245544697289959989999999999
Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101 (472)
Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~ 101 (472)
+..|++++. =.+.++|++=|. +..+|.+++.+-.|+++|+..+.... ...+.+.|+|+||+.++.+++..
T Consensus 2 d~~I~~va~-l~~A~~~~isF~------~n~ky~~~l~~t~A~aviv~~~~~~~-~~~~~~~Iiv~nP~~afa~i~~l 71 (72)
T pfam04613 2 DREISGIAP-LEEAGPGDISFL------ANPKYLKQLKTTKASAVIVTPDFADL-VPEGIALLVVKNPYLAFAKLLQL 71 (72)
T ss_pred CCEEECCCC-HHHCCCCCEEEE------CCHHHHHHHHHCCCCEEEECHHHHHH-CCCCCCEEEECCHHHHHHHHHHH
T ss_conf 947804547-643899978996------68878999986889899973788745-76898689989989999999975
No 45
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=94.34 E-value=0.34 Score=27.11 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=56.0
Q ss_pred HHHHHHCCEEECCCCC--CEEEEEEEECC-------CCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC--
Q ss_conf 8998727999526887--14746774022-------237898889716887476888999998698899985521245--
Q gi|254781101|r 9 DLLQAIQGHSIGIVPQ--GFVNGISIDSR-------SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-- 77 (472)
Q Consensus 9 ~l~~~~~g~~~~~~~~--~~i~~i~~dSr-------~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~-- 77 (472)
+|++.++|+++++.+. ..+.++.+-.. .+++|++.+ .+|.|.|- +..|+++|++++|......+.
T Consensus 1 ~I~~~L~g~vl~g~~~~~~~v~~~~igAm~~~~~l~~~~~g~lvI-~~gdR~di---~~~a~~~~~~~iIlTgg~~p~~~ 76 (105)
T pfam07085 1 DIAEILGAEVLNGGEGLLRRVGKVVIGAMSVENMLEYLRPGDLVI-TPGDREDI---QLAALLAGIAGLILTGGFEPSEE 76 (105)
T ss_pred CHHHHCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHCCCCEEE-EECCCHHH---HHHHHHHCCCEEEEECCCCCCHH
T ss_conf 957866999997686654205869999878999998606897999-92796899---99999824878999489898999
Q ss_pred ----CCCCCCCEEEEC-CHHHHHHHHH
Q ss_conf ----544697289959-9899999999
Q gi|254781101|r 78 ----IGSLSIPVFGVD-DVLGALNKLA 99 (472)
Q Consensus 78 ----~~~~~~~~i~v~-d~~~al~~la 99 (472)
....++|++.++ |+.++-..+.
T Consensus 77 v~~la~~~~ipii~t~~dT~~ta~~i~ 103 (105)
T pfam07085 77 VLKLAEEAGLPVLSTPYDTFTTARRIN 103 (105)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHH
T ss_conf 999998779839996688999999985
No 46
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.14 E-value=0.53 Score=25.85 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 001245654322122222222333322103567651012103455431147
Q gi|254781101|r 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 (472)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~ 321 (472)
.|....-.-.|.+.+..+|.-| |+.+|.-+|+|.+-|..+-+.+.
T Consensus 466 ~FD~~tl~PtYrl~~G~pG~S~------A~~IA~rlGlp~~ii~~A~~~l~ 510 (780)
T PRK00409 466 EFDEETLRPTYRLLIGIPGRSN------AFEIAKRLGLPPNIIEEAKKVYG 510 (780)
T ss_pred EECCCCCCCCEEEECCCCCCCH------HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 8740237860687059997636------99999992979999999998856
No 47
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=92.83 E-value=0.049 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=26.4
Q ss_pred HCCCCCCCHHHHHCCCCCCCCCCC---------CCCCCCCCCEEEEEEECC
Q ss_conf 001232214443015664433211---------212232322025553121
Q gi|254781101|r 153 LARMPVDVDFGIFELGMSHLGEIR---------FLTHLVRPHIAVITTIAP 194 (472)
Q Consensus 153 ll~~~~~~~~~V~E~g~~~~gei~---------~L~~i~~P~iaiiTNI~~ 194 (472)
+.-|..+.||.|+| |+.++-||. +.+++++|++-++--|.+
T Consensus 116 le~L~~~Yd~vv~E-GAGS~AEINL~~rDLaN~~iA~~~~A~~iLvADIDR 165 (502)
T TIGR00313 116 LEILAEEYDLVVIE-GAGSPAEINLKERDLANMRIAELADADVILVADIDR 165 (502)
T ss_pred HHHHHCCCCEEEEE-CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 98752028889982-688710005331572247898643976799975077
No 48
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication.
Probab=92.27 E-value=0.86 Score=24.47 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHH----CCCC-CEEEE---ECCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 989999999984----4789-89999---77132548999999998505779
Q gi|254781101|r 429 TMDGLFLFIQSS----LVDG-DVVVV---KSSNSCGFYRLINLLLEEFPAIQ 472 (472)
Q Consensus 429 ~~e~a~~~l~~~----~~~g-diVLi---KGSr~~~le~iv~~L~~~~~~~~ 472 (472)
+.|+|++.+.+. +..| ..|.| ||| | .|++.|+.++++.|.|+
T Consensus 765 R~E~Al~~LeK~l~~A~laG~~~v~IIHGKG~-G-~L~~~V~e~Lk~h~~Vk 814 (834)
T TIGR01069 765 RSEEALDRLEKFLDDALLAGYEVVEIIHGKGS-G-KLRKGVQELLKNHPKVK 814 (834)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-C-HHHHHHHHHHHCCCCEE
T ss_conf 27999999999999998789847899840266-5-05688998986299546
No 49
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=92.04 E-value=0.93 Score=24.25 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=71.0
Q ss_pred EEE--ECCCCCCCCHHHHHH--HHHHHHH-------CCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 310--002565321012577--7874111-------02687138851235417105899999999998649989999880
Q gi|254781101|r 341 LID--ESYNANPASMKAAIS--VLSQISP-------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 (472)
Q Consensus 341 iID--DsYNAnP~S~~aal~--~l~~~~~-------~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~ 409 (472)
||| |--|.||+ ++.|+ |+.+.-. ..+|.+|+++||.+ ++..-|..+ ..++..+--.|+++++
T Consensus 137 viNAGDG~~qHPT--Q~LLDLyTi~~~fGPDnP~l~~~~Gl~iA~vGDlk----ygRtvhS~~-~~L~~f~~~~v~l~sP 209 (336)
T TIGR00670 137 VINAGDGSGQHPT--QTLLDLYTIYEEFGPDNPALERLDGLKIALVGDLK----YGRTVHSLI-KALALFGNAEVYLISP 209 (336)
T ss_pred EEECCCCCCCCCC--HHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEECC----CCHHHHHHH-HHHHHHCCCEEEEECC
T ss_conf 6636878787975--34788999998718886303222885799984312----024766788-9986518956998677
Q ss_pred CH----HHHHHHCC-CCCCEEEECCHHHHHHHHHHHCCCCCEE---EEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 38----98998511-3797999789899999999844789899---997713254899999999850577
Q gi|254781101|r 410 HV----LALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV---VVKSSNSCGFYRLINLLLEEFPAI 471 (472)
Q Consensus 410 ~~----~~~~~~~~-~~~~~~~~~~~e~a~~~l~~~~~~gdiV---LiKGSr~~~le~iv~~L~~~~~~~ 471 (472)
+. +.+.+.+. ++..+....+++|+ +..=||+ .+. | .+-||+-....++|..|
T Consensus 210 ~~LrmP~~~~e~~~~~G~~~~~~~~l~e~-------~~~~DVlkiWY~t--R-iQkER~~~~d~~ey~~~ 269 (336)
T TIGR00670 210 EELRMPKEILEDLKAKGVKVRETESLEEV-------IDEADVLKIWYVT--R-IQKERFPEDDPEEYEKV 269 (336)
T ss_pred HHHHCHHHHHHHHHHCCCEEEEEEEHHHH-------HCCCCEEEEEEEE--C-CCCCCCCCCCHHHHHHH
T ss_conf 24306178899985289628995224344-------2157847886420--0-11123788788999841
No 50
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=91.60 E-value=0.12 Score=30.07 Aligned_cols=29 Identities=38% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCCEEEEE---CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99399983---036542012334677775201
Q gi|254781101|r 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++||+|. |-.|||||+-.+++.|...|.
T Consensus 103 ~~~VIav~N~KGGVGKTTtav~LA~~LA~~G~ 134 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTSAHLAQYLALRGY 134 (387)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 88089997888765699999999999997799
No 51
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=91.38 E-value=0.19 Score=28.79 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCC-CCCCHHHHHHHHHH
Q ss_conf 22222222333322103567651012103455431147664433101000365311331000256-53210125777874
Q gi|254781101|r 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-NPASMKAAISVLSQ 362 (472)
Q Consensus 284 ~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNA-nP~S~~aal~~l~~ 362 (472)
-|..+-..++.||.+=+...++=--| |.+++ |-... -|++ |+ +..+....| |+. .++-++.=|..-.+
T Consensus 24 IL~~L~~~~vk~ATFFlsG~Wae~hP-elvk~-lveI~---~~GH--EI--GsHgY~h~~--~~~l~~E~ikkd~~~a~~ 92 (198)
T TIGR02764 24 ILDTLKEEDVKNATFFLSGSWAERHP-ELVKE-LVEIV---KDGH--EI--GSHGYRHKN--YTTLEDEKIKKDLLRAQE 92 (198)
T ss_pred HHHHHHHCCCCCCCCEEEHHHHHCCH-HHHHH-HHHHH---HCCC--CC--CCCCCCCCC--CCCCCHHHHHHHHHHHHH
T ss_conf 76667655885333024315761277-89999-99998---4484--30--335421242--125876489999999888
Q ss_pred HHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 111026871388512354171058999999999986499899998--803898998511379799978989999999984
Q gi|254781101|r 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 (472)
Q Consensus 363 ~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~--G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~ 440 (472)
.-.+-.|+..-+|=-. -|.+. ..+.+.+.+.+...|.+- =+ ..+-+ =+..|..+....+.
T Consensus 93 ~i~~~~g~~p~LlRpP--~G~fn----~~~~~~ae~~GY~~V~WsWHvd-S~DWk-----------NPG~e~iv~~V~~~ 154 (198)
T TIGR02764 93 IIEKLTGKKPTLLRPP--NGAFN----KAVLKLAESLGYTVVHWSWHVD-SLDWK-----------NPGVESIVDRVVKN 154 (198)
T ss_pred HHHHHCCCCEEEEECC--CCCCC----HHHHHHHHHCCCCEEEEECCCC-CCCCC-----------CCCEEHHHHHHHCC
T ss_conf 8865105550165688--98604----6899999973991898624558-83545-----------78610001113312
Q ss_pred CCCCCEEEEE-CCCHH-----HHHHHHHHHHHH
Q ss_conf 4789899997-71325-----489999999985
Q gi|254781101|r 441 LVDGDVVVVK-SSNSC-----GFYRLINLLLEE 467 (472)
Q Consensus 441 ~~~gdiVLiK-GSr~~-----~le~iv~~L~~~ 467 (472)
+++|||||+= ||.+. .|.+|++.|+++
T Consensus 155 ~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~ 187 (198)
T TIGR02764 155 TKPGDIILLHDASDSAKQTVKALPEIIKKLKEK 187 (198)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 799856987634879744177899998998754
No 52
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=91.32 E-value=1.1 Score=23.75 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=53.2
Q ss_pred CCCCCEEEECCHHHCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHCC----C-CC-CEEEECCHHHHHHHHHH
Q ss_conf 2687138851235417105899999999998-6499899998803898998511----3-79-79997898999999998
Q gi|254781101|r 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALP----R-SI-HVHYSETMDGLFLFIQS 439 (472)
Q Consensus 367 ~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~-~~~~d~v~~~G~~~~~~~~~~~----~-~~-~~~~~~~~e~a~~~l~~ 439 (472)
-.|||.+|||| .+.- -.|.+.++ +.++ .|++.|...+..++.++ . .. .+.+.|+..++.+.+.
T Consensus 307 L~GKra~VFGD------~tHa--vg~T~~L~~ElG~-~vv~AGTY~k~~a~wvr~~~~gY~dGEvlv~ddf~~v~~~I~- 376 (562)
T TIGR01278 307 LTGKRAFVFGD------ATHA--VGVTKLLRDELGI-HVVGAGTYCKEQADWVREQVAGYVDGEVLVTDDFQEVADAIA- 376 (562)
T ss_pred CCCCCEEEECC------CHHH--HHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-
T ss_conf 15884698678------4489--9999998863791-798724798668999999983038824888253588999998-
Q ss_pred HCCCCCEEEEECCCHHHHHHHH
Q ss_conf 4478989999771325489999
Q gi|254781101|r 440 SLVDGDVVVVKSSNSCGFYRLI 461 (472)
Q Consensus 440 ~~~~gdiVLiKGSr~~~le~iv 461 (472)
.+.|. +|| |++|||=+
T Consensus 377 ~~~P~-lv~-----GTQMERH~ 392 (562)
T TIGR01278 377 ALEPE-LVL-----GTQMERHV 392 (562)
T ss_pred HHCCC-CEE-----CCCHHHHH
T ss_conf 60852-010-----56425677
No 53
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=91.22 E-value=0.24 Score=28.18 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHC-CC--------CCC-CH
Q ss_conf 999999999983-06993999830365420123346777752011222122110145741000-12--------322-14
Q gi|254781101|r 93 GALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RM--------PVD-VD 161 (472)
Q Consensus 93 ~al~~la~~~~~-~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll-~~--------~~~-~~ 161 (472)
+|-..|...... ....+..||||| |||=|.+.+=+=++..--|.+--+ ||+ +| |++ .+
T Consensus 16 ~AI~~L~~~l~~G~~~QtLLGvTGs-GKTFT~AnVIa~~~rPTLV~aHNK----------TLAAQLY~EfKefFPeNAVE 84 (667)
T TIGR00631 16 KAIAKLVEGLEAGEKEQTLLGVTGS-GKTFTMANVIAQVQRPTLVLAHNK----------TLAAQLYNEFKEFFPENAVE 84 (667)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECC-CHHHHHHHHHHHHCCCEEEECCCH----------HHHHHHHHHHHHHCCCCCEE
T ss_conf 9999999998568871478532148-627889899998479849985777----------67999999998638677245
Q ss_pred HHH------------------HC--CCCCCCCCCCCC-----CC-CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 443------------------01--566443321121-----22-32322025553121012344457888865433103
Q gi|254781101|r 162 FGI------------------FE--LGMSHLGEIRFL-----TH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 (472)
Q Consensus 162 ~~V------------------~E--~g~~~~gei~~L-----~~-i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~ 215 (472)
|+| || .++|. ||++| .. +-+.|+-|+=+||. +=.+|+-+.|.+--..|-.
T Consensus 85 YFvSYYDYYQPEAYvP~~DtyIEKdaSINd--eIerlR~SAT~SLl~RrDVIVVASVSc--IYGLG~P~~Y~~~~~~l~v 160 (667)
T TIGR00631 85 YFVSYYDYYQPEAYVPSKDTYIEKDASIND--EIERLRLSATKSLLERRDVIVVASVSC--IYGLGSPEEYLKMVLHLEV 160 (667)
T ss_pred EEEECCCCCCCCCCCCCCCCEEECCCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEEE--ECCCCCCHHHHCCEEEEEE
T ss_conf 255203237873214798841304553004--676778898886423787899987552--0688882556422786540
Q ss_pred CC
Q ss_conf 76
Q gi|254781101|r 216 GL 217 (472)
Q Consensus 216 ~l 217 (472)
+.
T Consensus 161 G~ 162 (667)
T TIGR00631 161 GK 162 (667)
T ss_pred CC
T ss_conf 78
No 54
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=91.09 E-value=0.15 Score=29.48 Aligned_cols=29 Identities=38% Similarity=0.403 Sum_probs=25.9
Q ss_pred CCCEEEEE---CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99399983---036542012334677775201
Q gi|254781101|r 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++||+|. |-.|||||+--|++.|...|.
T Consensus 120 ~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~ 151 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGY 151 (405)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98289997888776599999999999997799
No 55
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=90.97 E-value=0.43 Score=26.43 Aligned_cols=95 Identities=18% Similarity=0.311 Sum_probs=54.6
Q ss_pred CCHHHHHHHHCCEEECCCCC--CEEEEEEEEC-------CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEC----
Q ss_conf 56788998727999526887--1474677402-------2237898889716887476888999998698899985----
Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDS-------RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71 (472)
Q Consensus 5 ~~~~~l~~~~~g~~~~~~~~--~~i~~i~~dS-------r~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~---- 71 (472)
+|..+|+.++.|+.+++..- ..++.|++.- |-+.||.|.+ .|.|.|-|.. |+++|++..++-
T Consensus 71 LTf~Eiv~iidgqVLgG~~Gl~k~~sKFvIGAMt~~~i~rY~~~g~LlI--VGnR~~iq~l---AL~~~~AVLvTGGF~~ 145 (432)
T COG4109 71 LTFAEIVNIIDGQVLGGRAGLEKELSKFVIGAMTLDAILRYLDPGGLLI--VGNREDIQLL---ALENGNAVLVTGGFDV 145 (432)
T ss_pred HHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--EECHHHHHHH---HHHCCCEEEEECCCCC
T ss_conf 1199998762350432632266654665043521988996107895699--9468999999---9864985999579886
Q ss_pred -CCCCCCCCCCCCCEEEEC-CHHHHHHHHHHHHHH
Q ss_conf -521245544697289959-989999999999983
Q gi|254781101|r 72 -TDMVASIGSLSIPVFGVD-DVLGALNKLAVAARL 104 (472)
Q Consensus 72 -~~~~~~~~~~~~~~i~v~-d~~~al~~la~~~~~ 104 (472)
++........++|++... |+...-..+-++..+
T Consensus 146 s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n 180 (432)
T COG4109 146 SDEVIKLANEKGLPVLSTSYDTFTVATMINKALSN 180 (432)
T ss_pred CHHHHHHHCCCCCCEEEECCCCEEHHHHHHHHHHH
T ss_conf 58899764014884487045213099999899877
No 56
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=90.96 E-value=0.15 Score=29.46 Aligned_cols=71 Identities=30% Similarity=0.351 Sum_probs=42.1
Q ss_pred CCCCCEEEECC--CCCCCHH--------HHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 37898889716--8874768--------8899999869889998552124554469728995998999999999998306
Q gi|254781101|r 37 IAPQEAFFAIK--GPHYDGH--------DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 (472)
Q Consensus 37 v~~g~lFval~--g~~~DGh--------~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~ 106 (472)
+-+|.| +|. |+||-|- .| +|.+-|..+++=++|++.. |. +-..+..|..+...+-
T Consensus 76 ivegEL--PldflGsRFeGl~PPVV~~p~F---~IRkkA~~vfTLDdYV~~g-------im---taaQ~d~l~~Av~ar~ 140 (315)
T TIGR02782 76 IVEGEL--PLDFLGSRFEGLLPPVVEAPSF---AIRKKAVRVFTLDDYVEAG-------IM---TAAQRDVLREAVAARK 140 (315)
T ss_pred EEEECC--CCCHHHCCCCCCCCCCCCCCCC---HHCCCCCCCCCCHHHHHHC-------CC---CHHHHHHHHHHHHHCC
T ss_conf 266107--5111201100468775565510---1110224104707776404-------45---5789999999997129
Q ss_pred CCCEEEEECCCCCCHHH
Q ss_conf 99399983036542012
Q gi|254781101|r 107 KATIIAITGSVGKTTTK 123 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~ 123 (472)
+.-|+|=||| ||||-+
T Consensus 141 NIlv~GGTGS-GKTTLa 156 (315)
T TIGR02782 141 NILVVGGTGS-GKTTLA 156 (315)
T ss_pred CEEEECCCCC-CHHHHH
T ss_conf 8899814588-579999
No 57
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=90.42 E-value=0.21 Score=28.48 Aligned_cols=30 Identities=47% Similarity=0.586 Sum_probs=24.6
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 399983---036542012334677775201122
Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
+||-|| |-.|||||+.=|..-|...|+.+.
T Consensus 2 ~viViTSGKGGVGKTTtTANlG~aLA~lG~kVv 34 (272)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (272)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 589998178897735898999999996198289
No 58
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.28 E-value=0.98 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=12.7
Q ss_pred EEEEECCCCCCCCEEEE
Q ss_conf 67740222378988897
Q gi|254781101|r 29 GISIDSRSIAPQEAFFA 45 (472)
Q Consensus 29 ~i~~dSr~v~~g~lFva 45 (472)
.+-++||.+++|..|..
T Consensus 26 AvIls~r~i~~g~~~~~ 42 (407)
T COG1419 26 AVILSNRRIKKGGFLGL 42 (407)
T ss_pred CEEEECCEECCCCEEEE
T ss_conf 18854336347825632
No 59
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=90.16 E-value=0.15 Score=29.46 Aligned_cols=75 Identities=25% Similarity=0.296 Sum_probs=48.2
Q ss_pred HHCCCEEEEECCCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHHH-----------------CCCCCEEEEECCC--CCC
Q ss_conf 9869889998552124-5544697289959989999999999983-----------------0699399983036--542
Q gi|254781101|r 61 VQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARL-----------------RSKATIIAITGSV--GKT 120 (472)
Q Consensus 61 ~~~Ga~~~i~~~~~~~-~~~~~~~~~i~v~d~~~al~~la~~~~~-----------------~~~~~vI~ITGTn--GKT 120 (472)
+.+-+...+++.+... ...+..+.+..|+++..-|.+|...+.. ...+-||||.||. ||+
T Consensus 17 ~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKS 96 (283)
T COG1072 17 LRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKS 96 (283)
T ss_pred HHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHH
T ss_conf 54058642678999886067889779999999999999999999889988999999834668888879996057665577
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 012334677775201
Q gi|254781101|r 121 TTKEMLTIALSSIKK 135 (472)
Q Consensus 121 Tt~~~l~~iL~~~~~ 135 (472)
||+..+..+|+..+.
T Consensus 97 T~ar~L~~ll~~~~~ 111 (283)
T COG1072 97 TTARILQALLSRWPE 111 (283)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 899999999963889
No 60
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.04 E-value=0.34 Score=27.11 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=48.5
Q ss_pred CCCCCCEEEECCH-HHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHCCCCCC---EEEE---CCHHHHHHH
Q ss_conf 0268713885123-54171058999999999986499899998803898--9985113797---9997---898999999
Q gi|254781101|r 366 HGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSIH---VHYS---ETMDGLFLF 436 (472)
Q Consensus 366 ~~~~r~i~VlG~m-~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~--~~~~~~~~~~---~~~~---~~~e~a~~~ 436 (472)
....|.|+|.+.. +| |+-.- -..++..++..+ .+|.+++-+++. +...+..... ..+. .+.++++.
T Consensus 528 ~~~~kvi~vTS~~pgE-GKSt~--a~nLA~~~A~~G-~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~- 602 (726)
T PRK09841 528 ETENNILMITGATPDS-GKTFV--SSTLAAVIAQSD-QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQ- 602 (726)
T ss_pred CCCCCEEEEECCCCCC-CHHHH--HHHHHHHHHHCC-CEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCC-
T ss_conf 8888689997799999-77999--999999998479-959998288777107761599999877998389998899330-
Q ss_pred HHHHCCCCCEEEEECC---------CHHHHHHHHHHHHHHCC
Q ss_conf 9984478989999771---------32548999999998505
Q gi|254781101|r 437 IQSSLVDGDVVVVKSS---------NSCGFYRLINLLLEEFP 469 (472)
Q Consensus 437 l~~~~~~gdiVLiKGS---------r~~~le~iv~~L~~~~~ 469 (472)
....+|=-||-.|. -+-+|+.+++.|.++|-
T Consensus 603 --~~~~~~ldvl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD 642 (726)
T PRK09841 603 --HFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYD 642 (726)
T ss_pred --CCCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCC
T ss_conf --2798998998289999798999587699999999981399
No 61
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=89.45 E-value=0.51 Score=25.95 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 983069939998303--654201233467777520112
Q gi|254781101|r 102 ARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 102 ~~~~~~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+-..-+..+|||||+ .||+|..+-+..-|...|..+
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rV 82 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRV 82 (323)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 31179983787317998866889999999999779678
No 62
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=89.12 E-value=0.71 Score=25.00 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=43.5
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH-HHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99399983036--542012334677775-201122212211014574100012322144430156644332112122323
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS-IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~-~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~ 183 (472)
++.|.|+-|-| ||||+-.||+.+|.. .|++.. . | ..+..+...+.=++|... |+..-..+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~i-d-------g-----~d~~~~p~~vrr~IGVl~-~e~glY~R--- 89 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI-D-------G-----VDTVRDPSFVRRKIGVLF-GERGLYAR--- 89 (245)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEE-E-------E-----CCCCCCHHHHHHHCCEEC-CCCCHHHH---
T ss_conf 66499987689887123799999832588864998-4-------0-----021017187752021313-77670355---
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 22025553121012344457888865
Q gi|254781101|r 184 PHIAVITTIAPAHLSNFSGIEEIASA 209 (472)
Q Consensus 184 P~iaiiTNI~~dHld~~~s~e~i~~~ 209 (472)
+| ..+|+-||+-+.+....
T Consensus 90 -----lT--~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 90 -----LT--ARENLKYFARLNGLSRK 108 (245)
T ss_pred -----HH--HHHHHHHHHHHHHHHHH
T ss_conf -----30--89999999999624026
No 63
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=88.94 E-value=1.7 Score=22.48 Aligned_cols=12 Identities=8% Similarity=0.219 Sum_probs=5.4
Q ss_pred CEEEECCCCCCC
Q ss_conf 888971688747
Q gi|254781101|r 41 EAFFAIKGPHYD 52 (472)
Q Consensus 41 ~lFval~g~~~D 52 (472)
++|+-=-|.+++
T Consensus 32 ~i~i~D~G~~fp 43 (555)
T COG0595 32 DIIILDAGLKFP 43 (555)
T ss_pred CEEEEECCCCCC
T ss_conf 689997765668
No 64
>PRK06761 hypothetical protein; Provisional
Probab=88.92 E-value=0.16 Score=29.31 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=23.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHC
Q ss_conf 9830365420123346777752011--222122110
Q gi|254781101|r 112 AITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNN 145 (472)
Q Consensus 112 ~ITGTnGKTTt~~~l~~iL~~~~~~--~~t~gn~Nn 145 (472)
||-| .|||||.+|+...|++.|.- +...|+.++
T Consensus 9 GlPG-sGKSTta~~l~d~L~~~g~~v~~~~Egd~~h 43 (281)
T PRK06761 9 GLPG-FGKSTTAHLLNDKLSQLKIEVELFVEGDLNH 43 (281)
T ss_pred CCCC-CCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 6899-9801499999999986698538995078999
No 65
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=88.80 E-value=0.22 Score=28.42 Aligned_cols=21 Identities=57% Similarity=0.800 Sum_probs=17.3
Q ss_pred CEEEEECC--CCCCHHHHHHHHHH
Q ss_conf 39998303--65420123346777
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL 130 (472)
+.|+|||| .||||++..|+ -|
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HH
T ss_conf 937993799986687999999-82
No 66
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=88.79 E-value=0.31 Score=27.37 Aligned_cols=30 Identities=40% Similarity=0.531 Sum_probs=25.2
Q ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 93999830--3654201233467777520112
Q gi|254781101|r 108 ATIIAITG--SVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 108 ~~vI~ITG--TnGKTTt~~~l~~iL~~~~~~~ 137 (472)
.++|||+| -.|||||+--|+..|.+.|+.+
T Consensus 1 ~r~Iai~GKGGVGKTTtavNLA~aLa~~GkkV 32 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKV 32 (270)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 95899979985778999999999999879949
No 67
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.64 E-value=0.21 Score=28.52 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=19.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHHHHC
Q ss_conf 99399983036--542012334677775201
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~ 135 (472)
++++|..-|-+ |||||..=|++.+...++
T Consensus 74 ~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~ 104 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK 104 (270)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9818999888989889999999999986799
No 68
>PRK03839 putative kinase; Provisional
Probab=88.42 E-value=0.27 Score=27.75 Aligned_cols=21 Identities=62% Similarity=0.828 Sum_probs=17.3
Q ss_pred EEEEECC--CCCCHHHHHHHHHH
Q ss_conf 9998303--65420123346777
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL 130 (472)
+|+|||| .||||.+..|+.-|
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~l 24 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89997899999899999999976
No 69
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=88.03 E-value=0.25 Score=28.03 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEECCC--CCCHHHHHHHHHHHHHHC
Q ss_conf 99983036--542012334677775201
Q gi|254781101|r 110 IIAITGSV--GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGTn--GKTTt~~~l~~iL~~~~~ 135 (472)
|||||||. ||||++.-+.+|+...+.
T Consensus 1 IIaVtGsSGAGtsTv~r~f~~IF~re~v 28 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGI 28 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9899338888478799999998720588
No 70
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=88.00 E-value=0.21 Score=28.50 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCC--CCCHHHHHHHHHHHHHH
Q ss_conf 99983036--54201233467777520
Q gi|254781101|r 110 IIAITGSV--GKTTTKEMLTIALSSIK 134 (472)
Q Consensus 110 vI~ITGTn--GKTTt~~~l~~iL~~~~ 134 (472)
||||||+. ||||++..+.++|....
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 989978887869999999999858487
No 71
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=87.73 E-value=0.89 Score=24.36 Aligned_cols=40 Identities=33% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999983069939998303--654201233467777520112
Q gi|254781101|r 98 LAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 98 la~~~~~~~~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+...+...-+..+|||||+ .||+|..+-+...|...++.+
T Consensus 39 l~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v 80 (325)
T PRK09435 39 LDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKV 80 (325)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 998630179825997427999868899999999999679858
No 72
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=87.72 E-value=0.28 Score=27.73 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99983036542012334677775201
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL~~~~~ 135 (472)
++||.|| ||||+..-+++-|.+.|+
T Consensus 3 lmGvaG~-GKs~~a~~l~~~lg~iyP 27 (175)
T TIGR01313 3 LMGVAGS-GKSTIASALAHRLGDIYP 27 (175)
T ss_pred EECCCCC-CHHHHHHHHHHHHHHHCC
T ss_conf 7602786-288999999998543157
No 73
>PRK11519 tyrosine kinase; Provisional
Probab=86.97 E-value=1.3 Score=23.34 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=48.3
Q ss_pred CCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHCCCCC-C--EEEE---CCHHHHHHHH
Q ss_conf 026871388512354171058999999999986499899998803898--998511379-7--9997---8989999999
Q gi|254781101|r 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSI-H--VHYS---ETMDGLFLFI 437 (472)
Q Consensus 366 ~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~--~~~~~~~~~-~--~~~~---~~~e~a~~~l 437 (472)
...+|.|+|.+..-.=|+-.- -..++..++..+ .+|.+++-+++. +.+.+.... . ..+. .+.++++
T Consensus 523 ~~~~~vi~vTS~~pgEGKSt~--a~nLA~~~A~~G-~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i--- 596 (720)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFV--CANLAAVISQTN-KRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAA--- 596 (720)
T ss_pred CCCCCEEEEEECCCCCCHHHH--HHHHHHHHHHCC-CEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHC---
T ss_conf 888767999708999978999--999999998379-91999938777701677539999998599807999789970---
Q ss_pred HHHCCCCCEEEEECCC---------HHHHHHHHHHHHHHCCC
Q ss_conf 9844789899997713---------25489999999985057
Q gi|254781101|r 438 QSSLVDGDVVVVKSSN---------SCGFYRLINLLLEEFPA 470 (472)
Q Consensus 438 ~~~~~~gdiVLiKGSr---------~~~le~iv~~L~~~~~~ 470 (472)
...-.++=-||-.|.. +-+|..+++.|+++|.-
T Consensus 597 ~~~~~~~l~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~ 638 (720)
T PRK11519 597 KPTSIANFDLIPRGQVPPNPSELLMSERFAELVAWASKNYDL 638 (720)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCE
T ss_conf 357989989976999994989983875999999999852999
No 74
>COG4240 Predicted kinase [General function prediction only]
Probab=86.96 E-value=1.1 Score=23.86 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=37.1
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCHHHHHHHHHHHHHHC
Q ss_conf 9599899999999999830699399983036--542012334677775201
Q gi|254781101|r 87 GVDDVLGALNKLAVAARLRSKATIIAITGSV--GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 87 ~v~d~~~al~~la~~~~~~~~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~ 135 (472)
.++=....+.+++.++-+.-.+-++||.|+- ||||++..|..+|...|.
T Consensus 29 ~~dl~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ 79 (300)
T COG4240 29 AQDLHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL 79 (300)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999877889864454421279639985268887653599999999997365
No 75
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=86.55 E-value=0.44 Score=26.38 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCEEEE---ECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 939998---30365420123346777752011
Q gi|254781101|r 108 ATIIAI---TGSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 108 ~~vI~I---TGTnGKTTt~~~l~~iL~~~~~~ 136 (472)
++||+| -|-.|||||+--|++.|...|+.
T Consensus 1 MkiIai~s~KGGVGKTT~t~nLa~aLa~~G~r 32 (244)
T pfam06564 1 MAVLALQGVRGGVGTTSLTAALGWALQQLGES 32 (244)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 92999966999861999999999999977995
No 76
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=86.47 E-value=0.33 Score=27.23 Aligned_cols=24 Identities=54% Similarity=0.686 Sum_probs=19.9
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 9998303--65420123346777752
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
+|||+|. .||||++..+..+|...
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~ 26 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRW 26 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98978899877999999999986002
No 77
>pfam06555 consensus
Probab=86.12 E-value=2.3 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 6972899599899999999999830699399983036
Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 (472)
Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTn 117 (472)
.++....|++..+|+..+-... ++...|+.-||.
T Consensus 10 ~~f~~~~~~t~eeA~~~~~~lI---~~g~sV~~GGS~ 43 (200)
T pfam06555 10 NNFEAYYVENKEEALELILELI---PEGSTVGFGGSM 43 (200)
T ss_pred CCCEEEEECCHHHHHHHHHHHC---CCCCEEEECCHH
T ss_conf 8987999799999999999868---998999869317
No 78
>COG2403 Predicted GTPase [General function prediction only]
Probab=85.92 E-value=0.65 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHHH-CCC
Q ss_conf 69939998303---654201233467777520-112
Q gi|254781101|r 106 SKATIIAITGS---VGKTTTKEMLTIALSSIK-KTY 137 (472)
Q Consensus 106 ~~~~vI~ITGT---nGKTTt~~~l~~iL~~~~-~~~ 137 (472)
..-|+|+|||| .|||++..+++++|++.| +++
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred HCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 148559999723665567888999999986698237
No 79
>PRK10037 cell division protein; Provisional
Probab=85.66 E-value=0.53 Score=25.84 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC----CCHHH-HHCCCCCCCH
Q ss_conf 9998303654201233467777520112----22122-1101457410
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIALSSIKKTY----ACIGS-YNNHIGVPLT 152 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL~~~~~~~----~t~gn-~Nn~iGvplt 152 (472)
+.++.|-.||||++.-|++.|...|+.+ ..+.| +.-+.|+|++
T Consensus 6 l~s~kGGVGkTTltAnLA~aL~~~g~~VlaID~dpqN~Lrlhfg~~~~ 53 (250)
T PRK10037 6 LQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFT 53 (250)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 960788876899999999999977991899957825667875499854
No 80
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=85.51 E-value=0.75 Score=24.84 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCCCEEEE----ECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 069939998----3036542012334677775201
Q gi|254781101|r 105 RSKATIIAI----TGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 105 ~~~~~vI~I----TGTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++.|||.| .|-.|||-+..+|+..|++.|.
T Consensus 48 ~~~vPVI~VGNitvGGTGKTP~v~~La~~L~~~G~ 82 (332)
T PRK00313 48 RAPVPVIVVGNITVGGTGKTPLILWLIEHCRRRGL 82 (332)
T ss_pred CCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 58998999878735887777999999999997799
No 81
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=85.23 E-value=0.72 Score=24.96 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9939998303--654201233467777520112
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+..+|||||. .||+|.-+-+..-|...|..+
T Consensus 37 nA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~V 69 (333)
T TIGR00750 37 NAHVVGITGVPGAGKSTLVEKLIMELRRRGLKV 69 (333)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 907876646888857779999989997659768
No 82
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.18 E-value=0.39 Score=26.70 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 3999830365420123346777752
Q gi|254781101|r 109 TIIAITGSVGKTTTKEMLTIALSSI 133 (472)
Q Consensus 109 ~vI~ITGTnGKTTt~~~l~~iL~~~ 133 (472)
-|.||.|| ||||+...|++-|.-.
T Consensus 7 VVmGVsGs-GKSTvg~~LA~~L~~~ 30 (176)
T PRK09825 7 ILMGVSGS-GKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEECCCC-CHHHHHHHHHHHHCCC
T ss_conf 99828989-9899999999995987
No 83
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=85.00 E-value=0.64 Score=25.30 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 939998303--6542012334677775201122212
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIG 141 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~g 141 (472)
++|++|+|. .||||..+=+...|++.|..+++..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 728999962799734289999999975793799998
No 84
>PRK05480 uridine kinase; Provisional
Probab=84.88 E-value=0.52 Score=25.92 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=20.9
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 9939998303--6542012334677775
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
++-+|||+|. .||||.+..|...|..
T Consensus 5 ~P~iIgIaG~SgSGKTT~a~~L~~~l~~ 32 (209)
T PRK05480 5 QPIIIGIAGGSGSGKTTVASTIYEELGD 32 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9889999899977899999999998086
No 85
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=84.72 E-value=0.86 Score=24.46 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=26.8
Q ss_pred CCCCCEEEE----ECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 069939998----3036542012334677775201
Q gi|254781101|r 105 RSKATIIAI----TGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 105 ~~~~~vI~I----TGTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++.|||.| .|-.|||-++.+++..|++.|.
T Consensus 32 ~~~vpVI~VGNit~GGtGKTP~v~~l~~~l~~~g~ 66 (318)
T pfam02606 32 RLPVPVIVVGNITVGGTGKTPLVIALAELLRARGL 66 (318)
T ss_pred CCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 48999999989845887858999999999997699
No 86
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=83.88 E-value=0.61 Score=25.46 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=17.2
Q ss_pred CCEEEEECC--CCCCHHHHHHHH
Q ss_conf 939998303--654201233467
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTI 128 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~ 128 (472)
..+||+||+ .||||+..+++.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 64999957887788999999997
No 87
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=83.87 E-value=0.53 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=15.6
Q ss_pred EEEEECC--CCCCHHHHHHHH
Q ss_conf 9998303--654201233467
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTI 128 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~ 128 (472)
+|||||. .||||+..++..
T Consensus 2 iIgiTG~IgsGKStv~~~l~~ 22 (179)
T pfam01121 2 IVGLTGGIGSGKSTVANLFAD 22 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899857864789999999998
No 88
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=83.77 E-value=0.36 Score=26.95 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCCCE--EEECCCCCCCHHHHHHHHHH
Q ss_conf 467740222378988--89716887476888999998
Q gi|254781101|r 28 NGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQ 62 (472)
Q Consensus 28 ~~i~~dSr~v~~g~l--Fval~g~~~DGh~~i~~A~~ 62 (472)
.|.|..-+.+..|.. ++-+.+....|-+-+.+.++
T Consensus 73 cg~C~~C~~i~~g~~~d~~EiDaAs~~~vdd~rel~~ 109 (717)
T PRK08853 73 CGQCATCKEIDEGRFVDLLEIDAASRTKVEDTRELLD 109 (717)
T ss_pred CCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 8887026767447877524540565678899999998
No 89
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=83.63 E-value=0.57 Score=25.64 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9998303--654201233467777520
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+|||+|- .||||.+..|...|...+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNG 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 989989897789999999999984648
No 90
>PRK05259 consensus
Probab=83.13 E-value=3.4 Score=20.55 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=41.6
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||== .+-.++..|.+.|+.. + -++|.+...= |-.+..-. +.+...+++.|++.-.-.. .+.
T Consensus 211 ~~IIvDDiI-dTGgTl~~aa~~Lk~~---G-A~~V~~~~TH---gvfs~~A~----~ri~~s~i~~vvvTdTi~~--~~~ 276 (310)
T PRK05259 211 DCILIDDIV-DSGGTLCNAAEALLAN---G-ANSVTAYITH---GVLSGGAV----ARIASSKLKELVITDSIQP--TEA 276 (310)
T ss_pred EEEEECCHH-HCHHHHHHHHHHHHHC---C-CCEEEEEEEC---CCCCCHHH----HHHHCCCCCEEEEECCCCC--CHH
T ss_conf 489517344-1688999999999877---9-9869999978---53685699----9986289978999389788--845
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
.++..++...+ ...++..+...+..|
T Consensus 277 ~~~~~kl~vls-va~llAeaI~r~~~~ 302 (310)
T PRK05259 277 VNDAPNIRVLS-IAPLIGEAIRRTAAE 302 (310)
T ss_pred HHCCCCCEEEE-HHHHHHHHHHHHHCC
T ss_conf 70589939998-299999999998679
No 91
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=83.08 E-value=1 Score=24.03 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCCCCEEEE----ECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 069939998----3036542012334677775201
Q gi|254781101|r 105 RSKATIIAI----TGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 105 ~~~~~vI~I----TGTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++.|||.| +|..|||-++.+++..|...|.
T Consensus 46 ~~~vpVI~VGNitvGGtGKTP~v~~la~~l~~~g~ 80 (334)
T PRK00652 46 RFPVPVISVGNLTVGGNGKTPVVIWLAEQLQARGV 80 (334)
T ss_pred CCCCCEEEEECEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 58998999908887887779999999999997699
No 92
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=83.05 E-value=0.48 Score=26.11 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=18.6
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 9998303--6542012334677775
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
+|||+|. .||||++..|...|..
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9898899988599999999998099
No 93
>PRK13764 ATPase; Provisional
Probab=82.93 E-value=1.1 Score=23.84 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=47.4
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCC-CCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9939998303--654201233467777520112221221101457410001232-2144430156644332112122323
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVR 183 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~-~~~~~V~E~g~~~~gei~~L~~i~~ 183 (472)
+..=|=|.|+ .||||-..-++..|...+++++|..+ |-- +++++ =++|+-+|-+|...+||-- +++
T Consensus 258 ~a~GilIaG~PGaGKsTfaqalA~~~~~~g~iVKTmEs-------PRD-l~v~~~iTQy~~l~g~~e~t~diLl---LvR 326 (605)
T PRK13764 258 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMES-------PRD-LQVPPEITQYTPLEGSMEETADILL---LVR 326 (605)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCC-------CCC-CCCCCCCCEECCCCCCHHHHEEEEE---EEC
T ss_conf 36649997799997789999999999847978983248-------623-6689542052435688777300678---854
Q ss_pred CCEEEEEEEC
Q ss_conf 2202555312
Q gi|254781101|r 184 PHIAVITTIA 193 (472)
Q Consensus 184 P~iaiiTNI~ 193 (472)
||+.|+--+-
T Consensus 327 PDytifDE~R 336 (605)
T PRK13764 327 PDYTIFDEMR 336 (605)
T ss_pred CCCEEEEEHH
T ss_conf 8826640020
No 94
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=82.71 E-value=1.2 Score=23.61 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCCCCEEEE----ECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 069939998----3036542012334677775201
Q gi|254781101|r 105 RSKATIIAI----TGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 105 ~~~~~vI~I----TGTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++.|||.| .|-.|||-++.+++..|++.|.
T Consensus 53 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~G~ 87 (339)
T PRK01906 53 DVGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGF 87 (339)
T ss_pred CCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 48999999868876887577999999999997699
No 95
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=82.69 E-value=2.3 Score=21.61 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9939998303--654201233467777520112
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+..+|||||+ .||+|..+-+...|...++.+
T Consensus 28 ~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~v 60 (267)
T pfam03308 28 RAHRVGITGVPGAGKSTLIEALGMELRRRGHRV 60 (267)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 955998768998879999999999999689868
No 96
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=82.68 E-value=0.91 Score=24.31 Aligned_cols=29 Identities=38% Similarity=0.494 Sum_probs=24.2
Q ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3999830--3654201233467777520112
Q gi|254781101|r 109 TIIAITG--SVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~ITG--TnGKTTt~~~l~~iL~~~~~~~ 137 (472)
++|||+| -.|||||+-=|+..|.+.|+.+
T Consensus 1 r~iai~GKGGVGKTTtsvNLA~aLA~~GkrV 31 (269)
T pfam00142 1 RKIAIYGKGGIGKSTTSQNTSAALAEMGKKV 31 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9589989997688999999999999879909
No 97
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=82.64 E-value=1.1 Score=23.70 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred CCCCEEEEECCCCC--CHHHHHHHHHHHHH
Q ss_conf 69939998303654--20123346777752
Q gi|254781101|r 106 SKATIIAITGSVGK--TTTKEMLTIALSSI 133 (472)
Q Consensus 106 ~~~~vI~ITGTnGK--TTt~~~l~~iL~~~ 133 (472)
.+.|+|+||||.|- |||+.-...|+++.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~ 32 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQL 32 (289)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 778668884478887544899999999851
No 98
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=82.43 E-value=0.58 Score=25.61 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9998303--654201233467777520
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+|||+|. .||||.+..|...|...+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREG 27 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 989989985719999999999966058
No 99
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=82.05 E-value=0.4 Score=26.65 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCE--EEECCCCCCCHHHHHHHHHHC
Q ss_conf 88998727999526887147467740222378988--897168874768889999986
Q gi|254781101|r 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQK 63 (472)
Q Consensus 8 ~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~l--Fval~g~~~DGh~~i~~A~~~ 63 (472)
+-+++.++- .......-.|.|..-+.|..|.. ++-+.+....|-+-+.+.+++
T Consensus 56 Ri~Ak~lnC---~~~~~~~pcg~C~~C~~i~~g~~~d~iEiDaAS~~~vd~~r~l~~~ 110 (816)
T PRK07003 56 RIFAKALNC---ETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER 110 (816)
T ss_pred HHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 999998678---9999989787755578775588775478635543576899999986
No 100
>PRK10818 cell division inhibitor MinD; Provisional
Probab=82.00 E-value=1 Score=24.00 Aligned_cols=29 Identities=41% Similarity=0.583 Sum_probs=24.1
Q ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9399983---0365420123346777752011
Q gi|254781101|r 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 108 ~~vI~IT---GTnGKTTt~~~l~~iL~~~~~~ 136 (472)
.+||+|+ |-.|||||+--|+..|...|+.
T Consensus 2 ~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~k 33 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKK 33 (270)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 74999978999841899999999999977996
No 101
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=81.70 E-value=0.79 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99983036542012334677775201
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL~~~~~ 135 (472)
||+++|.=||||+-..|+.-|+..|+
T Consensus 1 VIs~VGaGGKTS~m~~LA~e~~~~G~ 26 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGY 26 (232)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 98998898799999999999987699
No 102
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=81.53 E-value=1.2 Score=23.42 Aligned_cols=31 Identities=45% Similarity=0.584 Sum_probs=24.7
Q ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9399983---036542012334677775201122
Q gi|254781101|r 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 108 ~~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
.++|-|| |-.|||||+.-++.-|...|+.+.
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~ 35 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV 35 (272)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 6499994488876743106778999997398599
No 103
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=81.11 E-value=1 Score=24.03 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=56.8
Q ss_pred CEEEE--CCC-CCCCHH-HHHHHHHHCCCEEE------EECCCCC-CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 88897--168-874768-88999998698899------9855212-4554469728995998999999999998306993
Q gi|254781101|r 41 EAFFA--IKG-PHYDGH-DFILHAVQKGAGLV------VVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 (472)
Q Consensus 41 ~lFva--l~g-~~~DGh-~~i~~A~~~Ga~~~------i~~~~~~-~~~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~ 109 (472)
.+-|+ .+| .-.+-. .|+.+|+++|...+ +.+.|.. ......+..+.-|.++..-|..+.----.+-+.+
T Consensus 70 ~liIgia~~gG~~~~~~~~~i~eAl~~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~ 149 (339)
T COG3367 70 ALIIGIAPPGGVLPESWREYIVEALEAGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAK 149 (339)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCC
T ss_conf 48999615888575788999999998373166555777611868999998719756762267420334304751146776
Q ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9998303---654201233467777520112221
Q gi|254781101|r 110 IIAITGS---VGKTTTKEMLTIALSSIKKTYACI 140 (472)
Q Consensus 110 vI~ITGT---nGKTTt~~~l~~iL~~~~~~~~t~ 140 (472)
+|.+-|| .||-||+--|...++..|......
T Consensus 150 ~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fv 183 (339)
T COG3367 150 VVLVVGTDCAVGKRTTALELREAAREEGIKAGFV 183 (339)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8999335632104388999999999709863157
No 104
>PRK07429 phosphoribulokinase; Provisional
Probab=81.09 E-value=0.92 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303--654201233467777520
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
++-+|||+|. .||||.+.-|..+|....
T Consensus 7 rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~ 36 (331)
T PRK07429 7 RPVIIGVAGDSGCGKSTFLRRLADLFGEEL 36 (331)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 998999857887789999999999838887
No 105
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=81.04 E-value=0.64 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=18.0
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303--654201233467777520
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+..+|-|.|- .||||+...|++-|.-.+
T Consensus 7 ~~~iiVVMGVsGsGKSTig~~LA~~l~~~f 36 (177)
T PRK11545 7 DHHIYVLMGVSGSGKSAVASAVAHQLHAAF 36 (177)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 875999984798999999999999819985
No 106
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=81.02 E-value=4 Score=20.05 Aligned_cols=67 Identities=28% Similarity=0.404 Sum_probs=28.7
Q ss_pred CEEEECCCC-CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHHHHHCCCCCEEEEECC--
Q ss_conf 888971688-747688899999869889998552124554469728995-9989999999999983069939998303--
Q gi|254781101|r 41 EAFFAIKGP-HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGS-- 116 (472)
Q Consensus 41 ~lFval~g~-~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v-~d~~~al~~la~~~~~~~~~~vI~ITGT-- 116 (472)
|.=+.++|. ||=+|-|. ++|+.+.+-.. .+..+|-+.- .=|+..|.++|.. ..+ .|=|||-
T Consensus 73 Dfs~~~~~~~RfRvN~f~----QRg~~a~vlR~------ip~~Ip~fe~LGLP~~v~~~~a~~----~~G-LiLVTGPTG 137 (350)
T TIGR01420 73 DFSFSLPGLARFRVNAFK----QRGGVALVLRL------IPSKIPTFEELGLPRPVLRELAER----PRG-LILVTGPTG 137 (350)
T ss_pred CEEEEECCCCEEEEHHHH----HCCHHHHHHHH------CCCCCCCHHHCCCCHHHHHHHHHC----CCC-CEEEECCCC
T ss_conf 446630673221220323----50006423231------153462166637987899999836----699-389876889
Q ss_pred CCCCHH
Q ss_conf 654201
Q gi|254781101|r 117 VGKTTT 122 (472)
Q Consensus 117 nGKTTt 122 (472)
.|||||
T Consensus 138 SGKSTT 143 (350)
T TIGR01420 138 SGKSTT 143 (350)
T ss_pred CCHHHH
T ss_conf 867899
No 107
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=80.79 E-value=0.75 Score=24.88 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=24.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777520
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSIK 134 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~~ 134 (472)
..+.|+|+=|=| |||||..||..+|+...
T Consensus 19 ~~G~vfGfLGPNGAGKTTti~mLtTll~P~s 49 (343)
T TIGR01188 19 REGEVFGFLGPNGAGKTTTIRMLTTLLKPTS 49 (343)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCCCCCC
T ss_conf 0624899768799851335634102557998
No 108
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=80.66 E-value=0.91 Score=24.29 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.4
Q ss_pred CCEEEEECC--CCCCHHHHHHHH
Q ss_conf 939998303--654201233467
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTI 128 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~ 128 (472)
..+|||||. .||||+..++..
T Consensus 2 m~~IgiTG~igsGKStv~~~l~~ 24 (199)
T PRK00081 2 MLIIGLTGGIGSGKSTVANIFAE 24 (199)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999578887779999999998
No 109
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=80.53 E-value=2.6 Score=21.34 Aligned_cols=28 Identities=39% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303--654201233467777520
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+..+|||+|. .||||+++.+...|+..+
T Consensus 33 rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~ 62 (230)
T PRK09270 33 RRTVVGIAGPPGAGKSTLAETLWEALSQQG 62 (230)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 718999989998899999999999986237
No 110
>PRK06696 uridine kinase; Validated
Probab=80.38 E-value=3.1 Score=20.79 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHC-C-CCCEEEEEC--CCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999999830-6-993999830--36542012334677775201
Q gi|254781101|r 93 GALNKLAVAARLR-S-KATIIAITG--SVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 93 ~al~~la~~~~~~-~-~~~vI~ITG--TnGKTTt~~~l~~iL~~~~~ 135 (472)
+.+.+||...... + ..-+|||.| -.||||.+.-|+..|.+.|.
T Consensus 9 ~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~ 55 (227)
T PRK06696 9 QVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGR 55 (227)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 89999999998359998689997789987879999999999974699
No 111
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=80.19 E-value=0.62 Score=25.42 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=5.6
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998505
Q gi|254781101|r 458 YRLINLLLEEFP 469 (472)
Q Consensus 458 e~iv~~L~~~~~ 469 (472)
+..|+.|+++|-
T Consensus 676 DP~VQ~L~q~Fg 687 (705)
T PRK05648 676 DPLIQQMIQQFG 687 (705)
T ss_pred CHHHHHHHHHCC
T ss_conf 989999999819
No 112
>CHL00175 minD septum-site determining protein; Validated
Probab=79.87 E-value=1.3 Score=23.19 Aligned_cols=30 Identities=40% Similarity=0.546 Sum_probs=24.4
Q ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9399983---03654201233467777520112
Q gi|254781101|r 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 108 ~~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
.+||+|+ |-.|||||+.-++..|.+.|+.+
T Consensus 13 ~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kV 45 (279)
T CHL00175 13 TRIIVITSGKGGVGKTTTTANLGMSIARLGYRV 45 (279)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 869999748998448999999999999789988
No 113
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=79.73 E-value=0.74 Score=24.90 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=6.5
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998505
Q gi|254781101|r 458 YRLINLLLEEFP 469 (472)
Q Consensus 458 e~iv~~L~~~~~ 469 (472)
+-+|+.|+++|-
T Consensus 639 DP~VQ~L~q~Fg 650 (663)
T PRK08770 639 DPTVQLLIQQQG 650 (663)
T ss_pred CHHHHHHHHHHC
T ss_conf 989999999729
No 114
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=79.66 E-value=0.11 Score=30.26 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHCCCCCCCHHC---C-CCCCCHHHHHCC-CCCCCCCCCCC
Q ss_conf 06993999830365420123346777752-011222122110145741000---1-232214443015-66443321121
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLA---R-MPVDVDFGIFEL-GMSHLGEIRFL 178 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~-~~~~~t~gn~Nn~iGvpltll---~-~~~~~~~~V~E~-g~~~~gei~~L 178 (472)
....++|.|+|++||+++..+....+.+. .++....|. |..=++-..+. + ....+.+++.|. +++ +|... -
T Consensus 61 ~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGT-NgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~-~~~~~-~ 137 (475)
T COG0769 61 EAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGT-NGKTTTTSLLAQILKKLGKKTALIGTEGDELS-PGILE-P 137 (475)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEEEEEECC-CCCCC-C
T ss_conf 567877998685377788899852386578518986387-85799999999998862982589997766326-88634-5
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 223232202555312101234445
Q gi|254781101|r 179 THLVRPHIAVITTIAPAHLSNFSG 202 (472)
Q Consensus 179 ~~i~~P~iaiiTNI~~dHld~~~s 202 (472)
+....|+.-.++|+..+++|..++
T Consensus 138 ~~~tTP~~~~l~~~~~~~~d~~~e 161 (475)
T COG0769 138 TGLTTPEALDLQNLLRDLLDRGAE 161 (475)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 667892178999999999973880
No 115
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=79.36 E-value=0.96 Score=24.15 Aligned_cols=27 Identities=41% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCC
Q ss_conf 9998303--65420123346777752011
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~~~ 136 (472)
||||||+ .||||..+-+...|...++.
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~ 29 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKR 29 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 97625899787899999999999978983
No 116
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=78.55 E-value=4.8 Score=19.54 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=5.1
Q ss_pred EEEEEECCCCC
Q ss_conf 46774022237
Q gi|254781101|r 28 NGISIDSRSIA 38 (472)
Q Consensus 28 ~~i~~dSr~v~ 38 (472)
.++-.|.|+|.
T Consensus 51 aafDVD~~KVG 61 (351)
T TIGR03450 51 AAFDVDAKKVG 61 (351)
T ss_pred EEEECCCCCCC
T ss_conf 99732704047
No 117
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.47 E-value=0.67 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCCCE--EEECCCCCCCHHHHHHHHHHC
Q ss_conf 467740222378988--897168874768889999986
Q gi|254781101|r 28 NGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQK 63 (472)
Q Consensus 28 ~~i~~dSr~v~~g~l--Fval~g~~~DGh~~i~~A~~~ 63 (472)
.|.|..-+.|..|.- ++=+.+....|-+-+.+.+++
T Consensus 78 cg~C~~C~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~ 115 (721)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDQ 115 (721)
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87765468775689876477436767888999999985
No 118
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=78.38 E-value=1.2 Score=23.62 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCCCEEE--ECCCCCCCHH--HHHHHHHHCCCEEE------EECCCCC-CCCCCCCCCEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 7898889--7168874768--88999998698899------9855212-4554469728995998999999999998306
Q gi|254781101|r 38 APQEAFF--AIKGPHYDGH--DFILHAVQKGAGLV------VVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 (472)
Q Consensus 38 ~~g~lFv--al~g~~~DGh--~~i~~A~~~Ga~~~------i~~~~~~-~~~~~~~~~~i~v~d~~~al~~la~~~~~~~ 106 (472)
.+..+.+ |-.|-...-+ ..|.+|+++|-..+ +.+.+.. ......++.++-|..+...+ .++.......
T Consensus 33 g~~~liiGiA~~GG~lp~~w~~~i~~Ai~~GldIvsGLH~~L~ddp~l~~~A~~~g~~i~DvR~p~~~~-~~~~g~~~~~ 111 (302)
T pfam07755 33 GADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVVSGLHEFLSDDPELAAAAKKHGVQIIDVRKPPVDL-PVATGKAREV 111 (302)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCC-CCCCCCCCCC
T ss_conf 999899974168884898999999999982892623357775148989999998699799915899988-6576840147
Q ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHHHCC
Q ss_conf 9939998303---65420123346777752011
Q gi|254781101|r 107 KATIIAITGS---VGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 107 ~~~vI~ITGT---nGKTTt~~~l~~iL~~~~~~ 136 (472)
+.++|.+-|| .||-||+-.|.+-|++.|..
T Consensus 112 ~~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~ 144 (302)
T pfam07755 112 KAKRVLTVGTDCAVGKMTTALELERALRERGLN 144 (302)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 987899960573340789999999999977998
No 119
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=78.37 E-value=4.8 Score=19.50 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=31.4
Q ss_pred CCCCCCCEECCCCC--CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 44331010003653--1133100025653210125777874111026871388512354171058999999999986499
Q gi|254781101|r 324 EGRGKRYRCALNQG--FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 (472)
Q Consensus 324 ~GR~~~~~~~~~~~--~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~ 401 (472)
++..+.+.+.++.. .+.++||== .+-.++..|.+.|+.. + -++|.+...= |-.+..- .+.+....+
T Consensus 325 ~neve~m~iIGDVkGK~~IIVDDmI-DTgGTL~~AA~~Lke~---G-Ak~VyA~aTH---GVfSg~A----ierI~~S~I 392 (443)
T PTZ00145 325 PNEIEKMDLVGNVYDSDVIIVDDMI-DTSGTLCEAAKQLKKH---G-ARRVFAFATH---GLFSGPA----IDRIEKSPL 392 (443)
T ss_pred CCCEEEEEEEECCCCCEEEEECCCC-CCCHHHHHHHHHHHHC---C-CCEEEEEEEC---CCCCHHH----HHHHHCCCC
T ss_conf 9936653557502798789967743-4556799999999967---9-9879999977---3078548----989754899
Q ss_pred CEEEEEC
Q ss_conf 8999988
Q gi|254781101|r 402 SHVWLSG 408 (472)
Q Consensus 402 d~v~~~G 408 (472)
+.|++.-
T Consensus 393 ~evVVTD 399 (443)
T PTZ00145 393 EEVVVTD 399 (443)
T ss_pred CEEEECC
T ss_conf 7899878
No 120
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=77.95 E-value=1.6 Score=22.76 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 939998303--6542012334677775201122212
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIG 141 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~g 141 (472)
.|||||+|. .||||..+=+-..|...|-.+++.+
T Consensus 2 ~Pii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IK 37 (170)
T PRK10751 2 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37 (170)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 877999946999999999999999998798499994
No 121
>PRK10799 putative hydrolase-oxidase; Provisional
Probab=77.91 E-value=4.7 Score=19.57 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=49.1
Q ss_pred CHHHHHHHHCCEEE-CCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 67889987279995-2688714746774022237898889716887476888999998698899985521
Q gi|254781101|r 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 (472)
Q Consensus 6 ~~~~l~~~~~g~~~-~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~ 74 (472)
.++||.+.+...+- ....|+.-+|+..++|+ .-.-+.+|+.-. -.-+++|+++||-++|+..|.
T Consensus 2 k~~El~~~l~~~l~~~~~~D~d~~GLqV~~~~-eV~kI~~alD~t----~~vi~eAi~~~aDliitHHpl 66 (247)
T PRK10799 2 KNTELEQLINEKLNSAAISDYAPNGLQVEGKE-TVQKIVTGVTAS----QALLDEAVRLQADAVIVHHGY 66 (247)
T ss_pred CHHHHHHHHHHHCCHHHCCCCCCCEEEECCCC-CCCEEEEEECCC----HHHHHHHHHCCCCEEEECCCC
T ss_conf 58999999985679966058897645877987-511899995698----999999998599999986740
No 122
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=77.82 E-value=1.2 Score=23.47 Aligned_cols=27 Identities=44% Similarity=0.594 Sum_probs=21.9
Q ss_pred EEEEE---CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99983---0365420123346777752011
Q gi|254781101|r 110 IIAIT---GSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 110 vI~IT---GTnGKTTt~~~l~~iL~~~~~~ 136 (472)
||+|. |-.||||++.-|+..|.+.|+.
T Consensus 1 iIav~s~KGGVGKTT~a~NLA~aLa~~g~~ 30 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYK 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 989973999870999999999999977991
No 123
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.80 E-value=0.99 Score=24.06 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=15.0
Q ss_pred EEEEEECCCCCCCCE--EEECCCCCCCHHHHHHHHHHC
Q ss_conf 467740222378988--897168874768889999986
Q gi|254781101|r 28 NGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQK 63 (472)
Q Consensus 28 ~~i~~dSr~v~~g~l--Fval~g~~~DGh~~i~~A~~~ 63 (472)
.|.|..-+.+..|.- ++-+.+....|-+-+.+.+++
T Consensus 73 cg~c~~c~~i~~g~~~d~~eidaas~~~v~~~r~l~~~ 110 (696)
T PRK06872 73 CGECENCKAIEEGNFIDLIEIDAASRTKVEDTRELLDN 110 (696)
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88862257674478775467505655788999999984
No 124
>PRK11670 putative ATPase; Provisional
Probab=77.61 E-value=1.6 Score=22.62 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.8
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399983---03654201233467777520112
Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
.||+|+ |-.|||||+.-|+..|.+.|..+
T Consensus 108 ~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kV 139 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKV 139 (369)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 89999858998889999999999999669937
No 125
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=77.17 E-value=4.7 Score=19.60 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=27.7
Q ss_pred HHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCC-H--HHHHHHHHH-CCCEEEEECC
Q ss_conf 7889987279995268871474677402223789888971688747-6--888999998-6988999855
Q gi|254781101|r 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD-G--HDFILHAVQ-KGAGLVVVNT 72 (472)
Q Consensus 7 ~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~D-G--h~~i~~A~~-~Ga~~~i~~~ 72 (472)
.++||+.. ..+-+|+.. ++|++||+-|| |++|= | ..=+.-|++ .|..|+|++.
T Consensus 27 ~~eLA~ha---M~g~~PeF~--------~kvr~GDviVA--GkNFGcGSSREQA~~ALK~aGv~aviA~S 83 (159)
T TIGR02087 27 PDELASHA---MEGIDPEFA--------KKVREGDVIVA--GKNFGCGSSREQAALALKAAGVAAVIAES 83 (159)
T ss_pred HHHHHHHC---CCCCCCCHH--------HHCCCCCEEEE--CCCCCCCCCHHHHHHHHHHCCEEEEEEEE
T ss_conf 78899870---558996313--------40789978871--41647788778899999747904898520
No 126
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=76.94 E-value=1.7 Score=22.56 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=23.4
Q ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9399983---0365420123346777752011
Q gi|254781101|r 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 108 ~~vI~IT---GTnGKTTt~~~l~~iL~~~~~~ 136 (472)
+++|+|+ |-.|||||+--|++.|.+.|+.
T Consensus 1 MkiIav~n~KGGVGKTT~avNLA~~La~~G~r 32 (246)
T TIGR03371 1 MKVIAIVGIKGGVGRTTLTAALASALKLLGEP 32 (246)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 93999975999854999999999999968997
No 127
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=76.74 E-value=0.99 Score=24.05 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=14.5
Q ss_pred EEEEECC--CCCCHHHHHHH
Q ss_conf 9998303--65420123346
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLT 127 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~ 127 (472)
+|||||. .||||+..++.
T Consensus 1 iigiTG~igSGKStv~~~l~ 20 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLK 20 (179)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 98863787578999999999
No 128
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=76.72 E-value=5.4 Score=19.20 Aligned_cols=312 Identities=21% Similarity=0.234 Sum_probs=145.7
Q ss_pred HHHHHHCCCEEEEECCCCC-------CCCCCC--CCCEEEECCHHHHHH--HHHHHHHHCCCCCEEEEECCC-CCCHHHH
Q ss_conf 9999986988999855212-------455446--972899599899999--999999830699399983036-5420123
Q gi|254781101|r 57 ILHAVQKGAGLVVVNTDMV-------ASIGSL--SIPVFGVDDVLGALN--KLAVAARLRSKATIIAITGSV-GKTTTKE 124 (472)
Q Consensus 57 i~~A~~~Ga~~~i~~~~~~-------~~~~~~--~~~~i~v~d~~~al~--~la~~~~~~~~~~vI~ITGTn-GKTTt~~ 124 (472)
|.+++++|-+.-....... ...+.. +..-++=+-|+..|. +||+.+-.|. ++|=.-|+. |=
T Consensus 73 v~e~lerG~syG~PtE~Ei~lA~~i~~~v~~~t~e~vRfVnSGTEATMsAvRLARG~TGR~--~IiKFeGcYHGh----- 145 (434)
T TIGR00713 73 VKEALERGTSYGAPTEAEILLAKEIISRVPSVTEEMVRFVNSGTEATMSAVRLARGFTGRD--KIIKFEGCYHGH----- 145 (434)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC--CEEEECCCCCCC-----
T ss_conf 9999973012689988999999999864055546516862176488999999863105887--278861764101-----
Q ss_pred HHHHHHHHHHCCCCCHHH---HHCCCCCCCHHCC----CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH
Q ss_conf 346777752011222122---1101457410001----232214443015664433211212232322025553121012
Q gi|254781101|r 125 MLTIALSSIKKTYACIGS---YNNHIGVPLTLAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 (472)
Q Consensus 125 ~l~~iL~~~~~~~~t~gn---~Nn~iGvpltll~----~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHl 197 (472)
-=.+|-.+|.-..|.|| -|| .|+|-...+ ++=+.-=++=|+ +.+.| .+||.|
T Consensus 146 -~D~lLv~AGSGaaT~g~CG~P~S-pGvP~~~~k~Tl~~PYND~~a~~~~-f~~~G----------~~iAgv-------- 204 (434)
T TIGR00713 146 -HDALLVKAGSGAATLGSCGLPTS-PGVPEDFAKLTLVLPYNDLEALEEA-FEEYG----------EEIAGV-------- 204 (434)
T ss_pred -HHHHCCCCCCHHHCCCCCCCCCC-CCCHHHHHHHCCCCCCCCHHHHHHH-HHHCC----------CCEEEE--------
T ss_conf -23200354521010468877888-8870114311340451738999999-98679----------834378--------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34445788886543310376221012101342468998752012333332222222222222344211346510012456
Q gi|254781101|r 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 (472)
Q Consensus 198 d~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~ 277 (472)
|++-+.-| .-|++-...++..+++.+...+.-.|+ | =-++ -|.+...
T Consensus 205 ---------------IvEPv~GN-mGvvpP~~eFL~~Lr~lt~e~g~LLI~----D----EV~T---------GFRva~~ 251 (434)
T TIGR00713 205 ---------------IVEPVAGN-MGVVPPKKEFLEGLRELTEEYGALLIF----D----EVIT---------GFRVALG 251 (434)
T ss_pred ---------------EECCCCCC-CCCCCCCCCHHHHHHHHHHHHCCEEEE----E----CCCC---------HHHCCHH
T ss_conf ---------------86120257-666488522358999999872957755----0----2210---------1221332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 54322122222222333322103567651--0121034554311476644331010003653113310002565321012
Q gi|254781101|r 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSIL--TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 (472)
Q Consensus 278 ~~~~~~~l~~~G~hnv~NalaAia~~~~l--Gi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~a 355 (472)
|-+ +.|+|.==| +++.+.+ |+|.- -.-||-+.|+-..=.|.+ +==-+.|.||-||-|
T Consensus 252 GAQ--------~yfgV~PDl--~~lGKI~GGGlP~g----------A~gGrrEiM~~laP~G~v-YQAGTlsGNPlam~A 310 (434)
T TIGR00713 252 GAQ--------EYFGVEPDL--TTLGKIIGGGLPVG----------AFGGRREIMERLAPEGPV-YQAGTLSGNPLAMAA 310 (434)
T ss_pred HCC--------HHCCCCCCC--EEECHHHCCCCCCE----------EECCCHHHHHHHCCCCCC-CCCCCCCCCHHHHHH
T ss_conf 150--------113787410--34233233764510----------122675688431788774-456435558899999
Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEE---------EC--CCHHHHHHHCCCCCCE
Q ss_conf 577787411102687138851235417105899999999998649989999---------88--0389899851137979
Q gi|254781101|r 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SG--FHVLALKDALPRSIHV 424 (472)
Q Consensus 356 al~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~---------~G--~~~~~~~~~~~~~~~~ 424 (472)
-+.+|+.+.....- + .+|-...+.+.+.|-+.+.+.++..-+. ++ +......++.+
T Consensus 311 G~atLk~~~~~~~~--Y------~~l~~~~~~L~~g~~e~l~~~gip~~~~~~gSMf~~FFtd~~~V~ny~~A~~----- 377 (434)
T TIGR00713 311 GLATLKLLDEEKGV--Y------TELDELAKRLAEGLSEVLEDKGIPHTVNRVGSMFSLFFTDEEEVTNYADAKK----- 377 (434)
T ss_pred HHHHHHHHHCCCCH--H------HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCHHHHHH-----
T ss_conf 99999985348883--4------8999999999999999998279858995044004566577889878899988-----
Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEECC----------CH-HHHH----HHHHHHHHHC
Q ss_conf 9978989999999984478989999771----------32-5489----9999999850
Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVKSS----------NS-CGFY----RLINLLLEEF 468 (472)
Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiKGS----------r~-~~le----~iv~~L~~~~ 468 (472)
.|.|...++....+.+| |.+--| +. -.+| ..++++.+-|
T Consensus 378 ---SD~e~F~~Ff~~mL~~G--VylpPS~FEa~F~S~AH~~E~i~yaq~~ti~a~~~~f 431 (434)
T TIGR00713 378 ---SDTELFAKFFHEMLEKG--VYLPPSQFEACFISAAHTEEDIEYAQTNTIEAAEEVF 431 (434)
T ss_pred ---HHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ---61898899999998588--8789872115551677772117899999999999998
No 129
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=76.71 E-value=1.2 Score=23.59 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=44.0
Q ss_pred CCHHHHHCC-CCCCCCCCC-------------CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 214443015-664433211-------------212232322025553121012344457888865433103762210121
Q gi|254781101|r 159 DVDFGIFEL-GMSHLGEIR-------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 (472)
Q Consensus 159 ~~~~~V~E~-g~~~~gei~-------------~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~V 224 (472)
+.|..|+=| |+|+.|.+. .+.+ ++++..|+|-|+.+||+.+- ..++.+|++-+..+.++|
T Consensus 55 ~~DvviLPv~G~~~~G~v~t~f~~~~~~l~~~~~~~-~~~~~~~~~Gisn~yL~~l~-----~~a~~~Li~l~erDdvAI 128 (288)
T TIGR02853 55 TLDVVILPVQGVSQDGKVATVFSNEKVVLKPELLEE-TKKHCTIYVGISNDYLEELA-----AEAGVKLIELFERDDVAI 128 (288)
T ss_pred CCCEEEECCCCCCCCCEEEEECCCCCEEECHHHHHH-CCCCEEEEECCCCHHHHHHH-----HHCCCCEEEECCCCCEEE
T ss_conf 666788167885998848741158721646689952-07943899737765899999-----871960241003575334
Q ss_pred HCC
Q ss_conf 013
Q gi|254781101|r 225 LNY 227 (472)
Q Consensus 225 iN~ 227 (472)
||.
T Consensus 129 YNS 131 (288)
T TIGR02853 129 YNS 131 (288)
T ss_pred ECC
T ss_conf 458
No 130
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=76.40 E-value=1.8 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCCEEEEE---CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99399983---036542012334677775201
Q gi|254781101|r 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472)
++.||+|. |-.|||||+--|++.|...|.
T Consensus 105 ~~~VIAVaNqKGGvGKTTTavnLA~~LAl~G~ 136 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGL 136 (388)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 87289995278885599999999999997799
No 131
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=76.09 E-value=3.4 Score=20.55 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHH-HC
Q ss_conf 69939998303---65420123346777752-01
Q gi|254781101|r 106 SKATIIAITGS---VGKTTTKEMLTIALSSI-KK 135 (472)
Q Consensus 106 ~~~~vI~ITGT---nGKTTt~~~l~~iL~~~-~~ 135 (472)
-+.++|+||.+ .||||+..-++..|... ++
T Consensus 33 ~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~ 66 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDK 66 (207)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7880999978999998899999999999972498
No 132
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=76.08 E-value=5.1 Score=19.33 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=11.7
Q ss_pred HCCCCEEEEECCCH-HHHHHHCCCC
Q ss_conf 64998999988038-9899851137
Q gi|254781101|r 398 LYNISHVWLSGFHV-LALKDALPRS 421 (472)
Q Consensus 398 ~~~~d~v~~~G~~~-~~~~~~~~~~ 421 (472)
-..+|.|+.+.|+. ..+-..+++.
T Consensus 74 L~~VD~VV~F~EDTP~~LI~~~~Pd 98 (144)
T TIGR02199 74 LSSVDYVVIFDEDTPEELIEELKPD 98 (144)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCCC
T ss_conf 7850037863898968999862962
No 133
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=75.91 E-value=0.84 Score=24.53 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=37.1
Q ss_pred CCCCCHHCCCCCCCHHH--HHC----CCC----------CCCCCCCCCCCCCCCCEEEEEEECCCHH----HHHHHHHHH
Q ss_conf 45741000123221444--301----566----------4433211212232322025553121012----344457888
Q gi|254781101|r 147 IGVPLTLARMPVDVDFG--IFE----LGM----------SHLGEIRFLTHLVRPHIAVITTIAPAHL----SNFSGIEEI 206 (472)
Q Consensus 147 iGvpltll~~~~~~~~~--V~E----~g~----------~~~gei~~L~~i~~P~iaiiTNI~~dHl----d~~~s~e~i 206 (472)
.+.|==+|-++.|..|. .++ +|+ ..|-.|..|-+-++|||.||| |+|=. ....++++|
T Consensus 110 F~~PGrVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViT--GHDa~~K~~~~~~DL~aY 187 (292)
T TIGR02855 110 FGMPGRVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVIT--GHDAYSKNKGNYGDLNAY 187 (292)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEE--CCCCEEECCCCHHHHHHC
T ss_conf 248864774228888999999988661972799998412180889999973099789994--666302167871136423
Q ss_pred HHHHH
Q ss_conf 86543
Q gi|254781101|r 207 ASAKA 211 (472)
Q Consensus 207 ~~~K~ 211 (472)
...|-
T Consensus 188 RhSky 192 (292)
T TIGR02855 188 RHSKY 192 (292)
T ss_pred CCCHH
T ss_conf 66568
No 134
>PRK01184 hypothetical protein; Provisional
Probab=75.71 E-value=1.7 Score=22.58 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=16.8
Q ss_pred CCEEEEECCC--CCCHHHHHHHHHHHHHH
Q ss_conf 9399983036--54201233467777520
Q gi|254781101|r 108 ATIIAITGSV--GKTTTKEMLTIALSSIK 134 (472)
Q Consensus 108 ~~vI~ITGTn--GKTTt~~~l~~iL~~~~ 134 (472)
..+||+||.. ||||+.++ |++.|
T Consensus 1 M~iIGlTG~iGSGKstva~i----~~e~G 25 (183)
T PRK01184 1 MMIIIVTGMPGSGKGEFSKI----ARELG 25 (183)
T ss_pred CEEEEEECCCCCCHHHHHHH----HHHCC
T ss_conf 93999968998878999999----99779
No 135
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=75.69 E-value=1.1 Score=23.67 Aligned_cols=37 Identities=16% Similarity=0.004 Sum_probs=16.7
Q ss_pred CCCCCCCCCCC----CCCCCHHHHH-HHHCCCCHHHHHHHHC
Q ss_conf 12222222233----3322103567-6510121034554311
Q gi|254781101|r 283 VVHHGIGYHMA----QNMLMTLGIV-SILTADVDTAIKALSV 319 (472)
Q Consensus 283 ~~l~~~G~hnv----~NalaAia~~-~~lGi~~~~i~~~L~~ 319 (472)
+..--||+||= .|.+...|.+ +..=...++..+.+..
T Consensus 281 ~D~W~PGEHNGTFRGNNlAFVtA~aAL~~yW~Dd~f~~~v~~ 322 (413)
T TIGR02407 281 LDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQR 322 (413)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 674678877886466527899999999984896268999999
No 136
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=74.51 E-value=1.8 Score=22.42 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHHCCCCCCEEEECCH---------HHHHHHHHHHCCCCCEEEE
Q ss_conf 99851137979997898---------9999999984478989999
Q gi|254781101|r 414 LKDALPRSIHVHYSETM---------DGLFLFIQSSLVDGDVVVV 449 (472)
Q Consensus 414 ~~~~~~~~~~~~~~~~~---------e~a~~~l~~~~~~gdiVLi 449 (472)
++-++-.++++-.||.- +.+...+.+.++-=.+|.|
T Consensus 612 iARALv~nPrILifDEATSALDYESE~~Im~Nm~~Ic~GRTVIiI 656 (703)
T TIGR01846 612 IARALVANPRILIFDEATSALDYESEAVIMRNMREICRGRTVIII 656 (703)
T ss_pred HHHHHHCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999973589467201131221476899999755887459827974
No 137
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=73.52 E-value=6.5 Score=18.67 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=8.4
Q ss_pred ECCHHHHHHHHHHHHHHCCCC
Q ss_conf 599899999999999830699
Q gi|254781101|r 88 VDDVLGALNKLAVAARLRSKA 108 (472)
Q Consensus 88 v~d~~~al~~la~~~~~~~~~ 108 (472)
|++.......|.++..+..++
T Consensus 60 v~~~~~~~~~l~~~La~~~~~ 80 (436)
T TIGR01035 60 VENLEEGKSALLKILAEYKNL 80 (436)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 876889999999998762367
No 138
>PTZ00301 uridine kinase; Provisional
Probab=73.38 E-value=2.6 Score=21.25 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=17.0
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHH
Q ss_conf 9939998303--65420123346777
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL 130 (472)
++.||||+|- .||||.+.-+..-|
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l 27 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98899996887678999999999998
No 139
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=73.22 E-value=1.9 Score=22.16 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=8.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999830365420123346777
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIAL 130 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL 130 (472)
.||=||| ||||+...++-+|
T Consensus 469 LVGeTGt-GKTT~IQ~La~~l 488 (4600)
T COG5271 469 LVGETGT-GKTTMIQYLALKL 488 (4600)
T ss_pred EEECCCC-CHHHHHHHHHHHH
T ss_conf 8714887-6546999999986
No 140
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=73.21 E-value=2.9 Score=20.93 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=25.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHHHCC
Q ss_conf 699399983036--5420123346777752011
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~~ 136 (472)
-++.||-+.|=| |||||-.=|++.|.+.|+.
T Consensus 80 ~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~ 112 (284)
T TIGR00064 80 KKPNVILFVGVNGVGKTTTIAKLANKLKKQGKS 112 (284)
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCE
T ss_conf 897799998440886010288999999874990
No 141
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=73.20 E-value=1.8 Score=22.35 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 651012103455431147664433101000365311331000256532101257778
Q gi|254781101|r 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 (472)
Q Consensus 304 ~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l 360 (472)
..-|++.+++...+..--+.+ +|... -. .+||.| -+++.+...++.|
T Consensus 143 ~r~gls~~~A~aRIaaQ~~~e---~r~a~----AD-~VIDNs--Gt~~~l~~~v~~l 189 (394)
T PRK03333 143 EQRGMAEADARARIAAQASDE---QRRAA----AD-VWLDNS--GTPEELVEAVRDL 189 (394)
T ss_pred HCCCCCHHHHHHHHHHCCCHH---HHHHH----CC-EEEECC--CCHHHHHHHHHHH
T ss_conf 637989999999999479999---99985----99-999698--9999999999999
No 142
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=72.81 E-value=2 Score=22.03 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 939998303--65420123346777752
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
.-+|||+|- .||||.+..|...|+..
T Consensus 8 ~iiIgIaG~SgSGKTTv~~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 6999986798778899999999982867
No 143
>PRK08233 hypothetical protein; Provisional
Probab=72.80 E-value=2.2 Score=21.71 Aligned_cols=24 Identities=50% Similarity=0.511 Sum_probs=17.6
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHH
Q ss_conf 9939998303--65420123346777
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL 130 (472)
++.||||+|- .||||.++-|..-|
T Consensus 2 kp~IIgIaGgSgSGKTtla~~l~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98899996888678999999999974
No 144
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=72.74 E-value=1.4 Score=23.15 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=22.4
Q ss_pred CEEEEEEEECCCCCCCCE--EEECCCCCCCHHHHHHHHHHC
Q ss_conf 147467740222378988--897168874768889999986
Q gi|254781101|r 25 GFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQK 63 (472)
Q Consensus 25 ~~i~~i~~dSr~v~~g~l--Fval~g~~~DGh~~i~~A~~~ 63 (472)
..-.|.|..-+.+..|.. ++-+.+....|-+.+.+.+++
T Consensus 70 ~~pcg~c~~c~~i~~g~~~d~~eidaas~~~vd~~rel~~~ 110 (643)
T PRK07994 70 ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 (643)
T ss_pred CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99787677689886589887588636777888999999984
No 145
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=72.64 E-value=6.8 Score=18.54 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=46.6
Q ss_pred CEEEEECCCH---HHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEE---------EEECCCHHHHHHHHHHHHHHCC
Q ss_conf 8999988038---989985113797999789899999999844789899---------9977132548999999998505
Q gi|254781101|r 402 SHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV---------VVKSSNSCGFYRLINLLLEEFP 469 (472)
Q Consensus 402 d~v~~~G~~~---~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiV---------LiKGSr~~~le~iv~~L~~~~~ 469 (472)
..-+++|+.. +++.+.+....-+..+++.+++.+.+...+...+.- .+...+| ..+++++.|.+-+|
T Consensus 342 g~pvi~GP~~~nf~e~~~~L~~~g~~~~v~~~~eL~~~~~~ll~~~~~~~~~~~~a~~~v~~~~G-at~r~~~~i~~~L~ 420 (423)
T PRK05749 342 GVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVSSLLTDPDAREAMGEAGVAFLKQNRG-ALQRTLQLLKPYLP 420 (423)
T ss_pred CCCEEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHCC
T ss_conf 99889993832779999999978995896899999999999976999999999999999997847-99999999997635
Q ss_pred CCC
Q ss_conf 779
Q gi|254781101|r 470 AIQ 472 (472)
Q Consensus 470 ~~~ 472 (472)
.+|
T Consensus 421 ~~~ 423 (423)
T PRK05749 421 PLK 423 (423)
T ss_pred CCC
T ss_conf 789
No 146
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=72.57 E-value=2.1 Score=21.90 Aligned_cols=26 Identities=46% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 9998303--6542012334677775201
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
+|.++|. .||||++..++..|.+.|.
T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~~g~ 28 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGK 28 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9898589977689999999999998899
No 147
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=72.32 E-value=2.8 Score=21.03 Aligned_cols=29 Identities=41% Similarity=0.557 Sum_probs=23.6
Q ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3999830--3654201233467777520112
Q gi|254781101|r 109 TIIAITG--SVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~ITG--TnGKTTt~~~l~~iL~~~~~~~ 137 (472)
+.|||.| -.|||||+.-|+..|.+.|+.+
T Consensus 1 ~~iaiyGKGGVGKTTts~NLaaaLA~~G~rV 31 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKV 31 (212)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9599988983568778999999999869969
No 148
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.07 E-value=3.3 Score=20.62 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=13.6
Q ss_pred CCEEEEECCC--CCCHHHHHHHHHHHHHH
Q ss_conf 9399983036--54201233467777520
Q gi|254781101|r 108 ATIIAITGSV--GKTTTKEMLTIALSSIK 134 (472)
Q Consensus 108 ~~vI~ITGTn--GKTTt~~~l~~iL~~~~ 134 (472)
+.||-+.|-| |||||-.=|++.|.+.|
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g 167 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG 167 (340)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 67999993488863717999999999789
No 149
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=71.80 E-value=2.7 Score=21.16 Aligned_cols=34 Identities=38% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 939998303--6542012334677775201122212
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIKKTYACIG 141 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~g 141 (472)
+++|+|.|- .||||..+=+-..|...|-.+++..
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iK 36 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 929999967999999999999999997798598997
No 150
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=71.41 E-value=5.5 Score=19.13 Aligned_cols=71 Identities=25% Similarity=0.319 Sum_probs=44.4
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCC-CCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 39998303--654201233467777520112221221101457410001232-214443015664433211212232322
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~-~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
.=|=|.|. .||||-..-++..+...|++++|..+ |-- +++++ =++|+=+|-.|...++|-- +++||
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEs-------PRD-l~v~~eITQYs~l~g~me~t~DiLL---LvRPD 332 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMES-------PRD-LQVSPEITQYSPLEGDMEKTADILL---LVRPD 332 (604)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCC-------CCC-CCCCHHHHHCCCCCCCHHHHCCEEE---EECCC
T ss_conf 646995699997468999999999866968863247-------513-5688666320644564555233799---96588
Q ss_pred EEEEE
Q ss_conf 02555
Q gi|254781101|r 186 IAVIT 190 (472)
Q Consensus 186 iaiiT 190 (472)
+.|+-
T Consensus 333 YTIyD 337 (604)
T COG1855 333 YTIYD 337 (604)
T ss_pred CEEHH
T ss_conf 45103
No 151
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=71.28 E-value=7.3 Score=18.34 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=31.5
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 113310002565321012577787411102687138851235417105899999999998649989999880
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~ 409 (472)
.+.++||== .+-.++..|.+.|+.. + -++|.+...= |-.+..- .+.+...+++.|+..-.
T Consensus 220 ~vIIVDDiI-dTGgTl~~aa~~Lk~~---G-A~~V~~~~TH---glfs~~A----~~rl~~s~i~~ivvTnT 279 (323)
T PRK02458 220 KAILIDDIL-NTGKTFAEAAKILERS---G-ATEIYAVASH---GLFAGGA----AEVLETAPIKEILVTDS 279 (323)
T ss_pred EEEEECCHH-HHHHHHHHHHHHHHHC---C-CCEEEEEEEC---CCCCHHH----HHHHHCCCCCEEEECCC
T ss_conf 678762023-2248899999999964---9-9768999976---4257079----99986499868998589
No 152
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=71.15 E-value=6.5 Score=18.66 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHCCCCCEEEEECCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 830699399983036------542012334677775201
Q gi|254781101|r 103 RLRSKATIIAITGSV------GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 103 ~~~~~~~vI~ITGTn------GKTTt~~~l~~iL~~~~~ 135 (472)
.++.+++.|-||+.+ |||||+==|++-|...|+
T Consensus 58 ~~~~~gklILVTaitPTP~GEGKTTttIGL~~aL~~lgk 96 (587)
T PRK13507 58 KDRPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGK 96 (587)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 048996399998468888889862105629999986088
No 153
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=70.99 E-value=2.6 Score=21.24 Aligned_cols=25 Identities=52% Similarity=0.603 Sum_probs=19.8
Q ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHC
Q ss_conf 99830--36542012334677775201
Q gi|254781101|r 111 IAITG--SVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 111 I~ITG--TnGKTTt~~~l~~iL~~~~~ 135 (472)
|+|+| -.||||++.++++.|.+.++
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~g~ 28 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGK 28 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 789889977499999999999997899
No 154
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=70.65 E-value=2.8 Score=21.05 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 05899999999998649989999880389899851137979997898999999998447
Q gi|254781101|r 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 (472)
Q Consensus 384 ~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~ 442 (472)
+-+++|=.+-+.+++..+|.++++-.+...+.+.+..- ..-.++.+..+.+.+.+.
T Consensus 273 Dfeql~P~~~~~i~~~r~DL~ll~~p~tew~~Dg~R~l---~~~~~R~~F~~~l~~~L~ 328 (346)
T TIGR01526 273 DFEQLHPFLKKTIAEYRFDLTLLLKPNTEWVDDGLRSL---GSEESRKEFQELLERALA 328 (346)
T ss_pred CHHHCCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCC---CCHHHHHHHHHHHHHHHH
T ss_conf 54450627887763278847997279987342885207---743227899999999999
No 155
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=70.53 E-value=5.2 Score=19.31 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=7.3
Q ss_pred CCCEEEEEEEEC
Q ss_conf 871474677402
Q gi|254781101|r 23 PQGFVNGISIDS 34 (472)
Q Consensus 23 ~~~~i~~i~~dS 34 (472)
.+..+.|+-..|
T Consensus 14 ~~~~~~g~~~p~ 25 (421)
T PRK04183 14 EGTVYEGILMPS 25 (421)
T ss_pred CCEEEEEEEECC
T ss_conf 997999998178
No 156
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=70.16 E-value=4.8 Score=19.52 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=15.4
Q ss_pred CCCCEEEEECC--CCCCHHHHHHHHHHH
Q ss_conf 69939998303--654201233467777
Q gi|254781101|r 106 SKATIIAITGS--VGKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGT--nGKTTt~~~l~~iL~ 131 (472)
+++-+|+|-|. .||||. +.++.+
T Consensus 37 pPP~vVavvGPpgvGKtTL---iksLvk 61 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTL---IKSLVK 61 (225)
T ss_pred CCCEEEEEECCCCCCHHHH---HHHHHH
T ss_conf 9996999989899778899---999999
No 157
>PRK07667 uridine kinase; Provisional
Probab=69.84 E-value=3.1 Score=20.77 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303--654201233467777520
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+--+|||.|- .||||.+.-|+..|...+
T Consensus 13 ~r~iIgIaG~sgSGKTTla~~L~~~l~~~~ 42 (190)
T PRK07667 13 NRFILGIDGLSRSGKTTFVANLKENMKQEG 42 (190)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 869999779897889999999999986659
No 158
>KOG0950 consensus
Probab=69.83 E-value=5.9 Score=18.94 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=44.6
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 223789888971688747688899999869889998552124-5544697289959989999999999983069939998
Q gi|254781101|r 35 RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 (472)
Q Consensus 35 r~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~-~~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~I 113 (472)
+.+.-|-.|.- -|..+|+.++|++|+.+|...+++..+... .......++|.-. |.-.-..+.+. +|+ +.+|.
T Consensus 519 ~ti~~GvAyHh-aGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira-P~~g~~~l~~~---~Yk-QM~GR 592 (1008)
T KOG0950 519 KTIPYGVAYHH-AGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA-PYVGREFLTRL---EYK-QMVGR 592 (1008)
T ss_pred EECCCCCEECC-CCCCCCHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCEEEEEC-CCCCCCHHHHH---HHH-HHHHH
T ss_conf 02003533034-44650068889999974676999943446406868751158747-75462300024---677-65302
Q ss_pred ECCCCCCHH
Q ss_conf 303654201
Q gi|254781101|r 114 TGSVGKTTT 122 (472)
Q Consensus 114 TGTnGKTTt 122 (472)
||..|..|.
T Consensus 593 AGR~gidT~ 601 (1008)
T KOG0950 593 AGRTGIDTL 601 (1008)
T ss_pred HHHCCCCCC
T ss_conf 000334657
No 159
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=69.76 E-value=3.3 Score=20.61 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9399983---036542012334677775201
Q gi|254781101|r 108 ATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 108 ~~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472)
+-||+|. |-.|||||+--|++.|...|.
T Consensus 106 ~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~ 136 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGH 136 (387)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 5289986168877699999999999997699
No 160
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=69.75 E-value=2 Score=22.03 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=17.1
Q ss_pred EEEEECC--CCCCHHHHHHHHHHH
Q ss_conf 9998303--654201233467777
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALS 131 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~ 131 (472)
||||+|. .||||.+..|...|.
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 989968888759999999999879
No 161
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.67 E-value=7.8 Score=18.11 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=40.9
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||== .+-.++..|.+.|+. .+. ++|.+...= |-.+..- .+.+.+.+++.|+..-.-.. .+.
T Consensus 203 ~viIVDDiI-~TGgTl~~aa~~Lk~---~GA-~~V~~~~TH---glfs~~A----~~rl~~s~i~~iv~TnTip~--~~~ 268 (304)
T PRK03092 203 TCVLVDDMI-DTGGTIAGAVEALKE---AGA-KDVIIAATH---GVLSDPA----AERLKNCGAREVVVTNTLPI--PEE 268 (304)
T ss_pred EEEEECCHH-HCCHHHHHHHHHHHH---CCC-CEEEEEEEC---CCCCHHH----HHHHHHCCCCEEEEECCCCC--CCC
T ss_conf 599977645-437359999999986---699-839999979---3459679----99997389987998188038--620
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
....++...+ +..++..+...+..|
T Consensus 269 -~~~~ki~~~s-va~llAeaI~ri~~~ 293 (304)
T PRK03092 269 -KRFDKLTVLS-IAPLLARAIREVFED 293 (304)
T ss_pred -CCCCCEEEEE-HHHHHHHHHHHHHCC
T ss_conf -0689829998-199999999998669
No 162
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=69.46 E-value=1.9 Score=22.26 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 544697289959989999999999983069-939998303654201233467777520112
Q gi|254781101|r 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 78 ~~~~~~~~i~v~d~~~al~~la~~~~~~~~-~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
..+.++|.|.--+.++-|-+ ....... +-|-|.||| ||+| ++|+|.+..+++.
T Consensus 124 vips~IP~L~~MgiE~DLf~---alLP~~GLGLiCG~TGS-GKST---l~AaiY~~~l~t~ 177 (374)
T TIGR02525 124 VIPSDIPDLKKMGIEPDLFE---ALLPKAGLGLICGETGS-GKST---LAAAIYRHCLETY 177 (374)
T ss_pred HCCCCCCCHHHCCCCHHHHH---HHCCCCCCEEECCCCCC-CHHH---HHHHHHHHHCCCC
T ss_conf 05566651323478768998---70500378022177897-2899---9999999850748
No 163
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=69.13 E-value=2.2 Score=21.80 Aligned_cols=29 Identities=41% Similarity=0.404 Sum_probs=23.2
Q ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399983--03654201233467777520112
Q gi|254781101|r 109 TIIAIT--GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~IT--GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
+-|||- |-.|||||+-=|+..|...|+.+
T Consensus 2 ~~ia~yGKGGVGKTTTavNLAaALA~~GkkV 32 (292)
T PRK13230 2 KQIAFYGKGGIGKSTTVCNLAAALSKSGKKV 32 (292)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 6799917998578989999999999879959
No 164
>PRK10416 cell division protein FtsY; Provisional
Probab=69.06 E-value=4 Score=20.04 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=12.3
Q ss_pred CEECCCCCCEEEEEECCCCCCCCH
Q ss_conf 100036531133100025653210
Q gi|254781101|r 330 YRCALNQGFFTLIDESYNANPASM 353 (472)
Q Consensus 330 ~~~~~~~~~~~iIDDsYNAnP~S~ 353 (472)
+++.....++-+|-..++++|.|+
T Consensus 342 L~~w~~r~~v~vi~~~~g~Dpa~V 365 (499)
T PRK10416 342 LQVWGQRNNIPVIAQHTGADSASV 365 (499)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 999842457369836899997999
No 165
>PHA02518 ParA-like protein; Provisional
Probab=68.92 E-value=3.1 Score=20.74 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=21.9
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 399983---0365420123346777752011
Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~~ 136 (472)
+||+|. |-.|||||+--|+..|...|+.
T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~ 31 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHK 31 (211)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9899980899974999999999999978994
No 166
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=68.51 E-value=3.4 Score=20.48 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=29.6
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 959989999999999983069939998303--65420123346777752
Q gi|254781101|r 87 GVDDVLGALNKLAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 87 ~v~d~~~al~~la~~~~~~~~~~vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
+|+|++..|.... ..+.+.++.-+||- .|||||..+|+.-|.-.
T Consensus 27 KV~eV~~WL~~~~---~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~e 72 (490)
T pfam03215 27 KIAEVDHWLKAVF---LESNKQLILLLTGPSGCGKSTTVKVLSKELGIE 72 (490)
T ss_pred HHHHHHHHHHHHH---CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 3999999999985---477773189987989988999999999975968
No 167
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=67.31 E-value=2.9 Score=20.99 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCEEEEECC--CCC----CHHHHHHHHHHHH
Q ss_conf 939998303--654----2012334677775
Q gi|254781101|r 108 ATIIAITGS--VGK----TTTKEMLTIALSS 132 (472)
Q Consensus 108 ~~vI~ITGT--nGK----TTt~~~l~~iL~~ 132 (472)
+-+|||+|. .|| ||+.++|.+.|..
T Consensus 10 c~iigI~GgSgSGKs~iATtV~~~i~~~~~~ 40 (220)
T TIGR00235 10 CIIIGISGGSGSGKSLIATTVARKIYEQLGK 40 (220)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 1799701766101567899999999998314
No 168
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=67.23 E-value=3.4 Score=20.49 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.3
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHH
Q ss_conf 939998303--654201233467777
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALS 131 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~ 131 (472)
.++|+|.|+ .||||.+++|++=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 60899844644687899999998838
No 169
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=66.67 E-value=9 Score=17.71 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCCEEEE----ECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 69939998----303654201233467777520112
Q gi|254781101|r 106 SKATIIAI----TGSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 106 ~~~~vI~I----TGTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
.+.|||.| -|-+|||-+.-+|+.-|++.|-..
T Consensus 45 ~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~ 80 (336)
T COG1663 45 APVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRV 80 (336)
T ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 788789985577778996889999999998669736
No 170
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=66.41 E-value=2.4 Score=21.57 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=19.0
Q ss_pred ECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 30365420123346777752011
Q gi|254781101|r 114 TGSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 114 TGTnGKTTt~~~l~~iL~~~~~~ 136 (472)
-|-.||||++..+++.|.+.|+.
T Consensus 7 KGGVGKTT~a~nLA~~la~~G~r 29 (212)
T pfam01656 7 KGGVGKTTLAANLARALAKRGYR 29 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99806999999999999978997
No 171
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=65.72 E-value=2.2 Score=21.83 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=26.8
Q ss_pred ECC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHC
Q ss_conf 303-65420123346777752011222122110145741000123221444301
Q gi|254781101|r 114 TGS-VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 (472)
Q Consensus 114 TGT-nGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E 166 (472)
||| .|||.++..+...|++.|......+ | -..+|+.++|
T Consensus 6 TdT~VGKT~vt~~l~~~l~~~G~~v~~~K--------P------v~t~D~vlVE 45 (134)
T cd03109 6 TGTDIGKTVATAILARALKEKGYRVAPLK--------P------VQTYDFVLVE 45 (134)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEC--------H------HHCCCEEEEE
T ss_conf 78887689999999999997799177875--------6------6727989998
No 172
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=65.39 E-value=4.1 Score=19.99 Aligned_cols=33 Identities=36% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH-CCCCC
Q ss_conf 9939998303--654201233467777520-11222
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK-KTYAC 139 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~-~~~~t 139 (472)
++..|+|.|- .||||..++++..|...| +|+.|
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 962999978888988999999999999829807998
No 173
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=65.39 E-value=3.6 Score=20.36 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEE---CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99983---03654201233467777520112
Q gi|254781101|r 110 IIAIT---GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 110 vI~IT---GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
||+|+ |-.||||++..++..|.+.|+.+
T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v 31 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKV 31 (169)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 9899749998819999999999999879978
No 174
>KOG1970 consensus
Probab=64.57 E-value=6.1 Score=18.84 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=33.5
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 959989999999999983069939998303--65420123346777752
Q gi|254781101|r 87 GVDDVLGALNKLAVAARLRSKATIIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 87 ~v~d~~~al~~la~~~~~~~~~~vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
.++++..+|..+ .....+....+.=+||- +|||||...|+..|.-.
T Consensus 90 KI~eVk~WL~~~-~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970 90 KISEVKQWLKQV-AEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred HHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCE
T ss_conf 489999999999-974536676079985798887131999999864802
No 175
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=64.52 E-value=9.9 Score=17.45 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=42.0
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||-= .+-.+|..|.+.|++. +. ++|.+...= |-.+..-. +.+...+++.|+..-.-.. .+.
T Consensus 219 ~~IIVDDiI-dTGgTl~~aa~~Lk~~---GA-~~V~~~~TH---glfs~~A~----~rl~~s~i~~ivvTnTip~--~~~ 284 (319)
T PRK04923 219 TCVLVDDLV-DTAGTLCAAAAALKQR---GA-LKVVAYITH---PVLSGPAV----DNINNSQLDELVVTDTIPL--SEA 284 (319)
T ss_pred EEEEECCHH-CCCHHHHHHHHHHHHC---CC-CEEEEEEEC---CCCCHHHH----HHHHHCCCCEEEEECCCCC--CHH
T ss_conf 699966432-0651299999999875---99-868999979---76886799----9997089988998289658--622
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
.+...++...+ ...++..+...+..|
T Consensus 285 ~~~~~kl~vls-va~llA~aI~ri~~~ 310 (319)
T PRK04923 285 ARTCAKIRQLS-VAELLAETIRRIAFG 310 (319)
T ss_pred HCCCCCCEEEE-HHHHHHHHHHHHHCC
T ss_conf 33589838997-389999999998679
No 176
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=64.49 E-value=3.8 Score=20.19 Aligned_cols=51 Identities=35% Similarity=0.604 Sum_probs=33.2
Q ss_pred EEEEE---CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCC
Q ss_conf 99983---0365420123346777752011222122110145741000123221444301566
Q gi|254781101|r 110 IIAIT---GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 (472)
Q Consensus 110 vI~IT---GTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~ 169 (472)
||+|+ |-.||||++--++..|.+.|+.+.-. --++|++ + -+.||.++.+++
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~---D~D~g~a----n--~~~D~viiD~~a 54 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLL---DADLGLA----N--LDYDYIIIDTGA 54 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE---ECCCCCC----C--CCCCEEEEECCC
T ss_conf 9899649999839999999999999789969999---8989996----5--799999994899
No 177
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=64.34 E-value=5 Score=19.42 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCEEEEECCC---CCCHHHHHHHHHHHHHHCC
Q ss_conf 9399983036---5420123346777752011
Q gi|254781101|r 108 ATIIAITGSV---GKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 108 ~~vI~ITGTn---GKTTt~~~l~~iL~~~~~~ 136 (472)
.+.+=||||. |||.++..|++.|++.|..
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~ 33 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYS 33 (223)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 73699982799964999999999999968970
No 178
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=63.90 E-value=5.2 Score=19.29 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=24.8
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 939998303--6542012334677775201122
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~ 138 (472)
..+|||.|- -|||||+.-++..|...|+.+-
T Consensus 2 ~~~iaiyGKGGIGKSTttaNlsaALA~~GkkV~ 34 (269)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAALAKLGKKVL 34 (269)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 539999789954788899999999997699389
No 179
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=63.77 E-value=4.7 Score=19.57 Aligned_cols=85 Identities=25% Similarity=0.235 Sum_probs=37.7
Q ss_pred EEEECC--CCCCHHHHHHHHHHHHHHC----------CCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCC-C--
Q ss_conf 998303--6542012334677775201----------122212211014574100012322144430156644332-1--
Q gi|254781101|r 111 IAITGS--VGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE-I-- 175 (472)
Q Consensus 111 I~ITGT--nGKTTt~~~l~~iL~~~~~----------~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~ge-i-- 175 (472)
|.+-|+ +||||.+.-|.--=-..-| ..-|||-|-++=+.--+|+-.-.|.|+.++=.+++..-. +
T Consensus 3 ~~f~G~~gCGKTTL~q~L~g~~~~YKKTQAvE~~~k~~IDTPGEY~enr~~Y~AL~vtaaDAd~i~lV~~a~~~~~~f~P 82 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIKYKKTQAVEYKDKEAIDTPGEYVENRRYYSALIVTAADADVIALVQSATDEESRFSP 82 (144)
T ss_pred EEEEECCCCCHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCC
T ss_conf 78871588874435431168732102334454258886559850015752378888887210236677357764223785
Q ss_pred CCCCCCCC-CCEEEEEEECCC
Q ss_conf 12122323-220255531210
Q gi|254781101|r 176 RFLTHLVR-PHIAVITTIAPA 195 (472)
Q Consensus 176 ~~L~~i~~-P~iaiiTNI~~d 195 (472)
..++=+.+ |-|||||=+..+
T Consensus 83 gF~~~f~kK~~IG~vTK~DLA 103 (144)
T TIGR02528 83 GFASIFVKKEVIGIVTKIDLA 103 (144)
T ss_pred CCCCCCCCCCEEEEEEECCCC
T ss_conf 000236788634788403788
No 180
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=63.61 E-value=7.2 Score=18.35 Aligned_cols=10 Identities=40% Similarity=0.321 Sum_probs=3.4
Q ss_pred CCCCHHHHHH
Q ss_conf 5321012577
Q gi|254781101|r 349 NPASMKAAIS 358 (472)
Q Consensus 349 nP~S~~aal~ 358 (472)
||.||.+|++
T Consensus 287 ~~~s~~~Ai~ 296 (304)
T PRK03946 287 NTKSYLNAIK 296 (304)
T ss_pred CHHHHHHHHH
T ss_conf 9699999999
No 181
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=63.39 E-value=2.5 Score=21.35 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=33.4
Q ss_pred EEECC--CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCC-CCCCCC--CCCCC
Q ss_conf 98303--654201233467777520112221221101457410001232214443015-664433--21121
Q gi|254781101|r 112 AITGS--VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLG--EIRFL 178 (472)
Q Consensus 112 ~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~-g~~~~g--ei~~L 178 (472)
=-||+ .||||++..+|..|.-. .....|=|- +-+-.....+.-.=|+|+ |+|+-| ||..|
T Consensus 40 LF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~------C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l 104 (363)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNE------CESCKEINSGSSLDVIEIDAASNNGVDDIREL 104 (363)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCC------CCHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 502859976355899999986588-787787777------50227765289866688648656878899999
No 182
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=63.15 E-value=10 Score=17.28 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=26.0
Q ss_pred HCCCCCEEEEECCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 30699399983036------542012334677775201
Q gi|254781101|r 104 LRSKATIIAITGSV------GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 104 ~~~~~~vI~ITGTn------GKTTt~~~l~~iL~~~~~ 135 (472)
.+.+++.|-||+.+ |||||+==|++-|...|+
T Consensus 50 ~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk 87 (577)
T PRK13506 50 DQPKGKLVIVTAVTPTPLGEGKTVTTIGLTQGLNALGQ 87 (577)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 38996499998568988989841109879999987198
No 183
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=63.14 E-value=3.4 Score=20.48 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.6
Q ss_pred EECC---CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8303---6542012334677775201122
Q gi|254781101|r 113 ITGS---VGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 113 ITGT---nGKTTt~~~l~~iL~~~~~~~~ 138 (472)
|||| .|||-++..|++-|++.|..++
T Consensus 2 vTGtDT~VGKT~~ss~La~~lk~~G~~~g 30 (187)
T TIGR00347 2 VTGTDTGVGKTVVSSALAKKLKKAGYSVG 30 (187)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 10224586178998999999997598525
No 184
>PRK08356 hypothetical protein; Provisional
Probab=63.05 E-value=4.3 Score=19.87 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=18.7
Q ss_pred CEEEEECCC--CCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 399983036--54201233467777520112221
Q gi|254781101|r 109 TIIAITGSV--GKTTTKEMLTIALSSIKKTYACI 140 (472)
Q Consensus 109 ~vI~ITGTn--GKTTt~~~l~~iL~~~~~~~~t~ 140 (472)
-+|||||-+ ||+|++.++ +..|-++.+.
T Consensus 6 mIIgitG~~gSGK~tva~~l----~~~G~~~~s~ 35 (195)
T PRK08356 6 MIVGIAGKIAAGKTTVAKFL----EELGFCRISC 35 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEEEEC
T ss_conf 69998589988789999999----9869928842
No 185
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=62.97 E-value=2.2 Score=21.75 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHH-HHCCC
Q ss_conf 9939998303--6542012334677775-20112
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSS-IKKTY 137 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~-~~~~~ 137 (472)
++-++.|-|- +||||+..||..+.+. +|+++
T Consensus 18 ~GEi~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~ 51 (372)
T TIGR01186 18 KGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGQIF 51 (372)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 5438999778998578999998722577787467
No 186
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=62.95 E-value=5.9 Score=18.95 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHH-HHCCCC
Q ss_conf 93999830--36542012334677775-201122
Q gi|254781101|r 108 ATIIAITG--SVGKTTTKEMLTIALSS-IKKTYA 138 (472)
Q Consensus 108 ~~vI~ITG--TnGKTTt~~~l~~iL~~-~~~~~~ 138 (472)
.+.|||.| -.|||||+.=|+..|.. .|+.+-
T Consensus 2 ~~~iaiyGKGGIGKSTTt~NLaaALA~l~GkrVl 35 (275)
T PRK13233 2 TRKIAIYGKGGIGKSTTTQNTAAAMAHFHDKKVF 35 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 7389998998544654599999999964798899
No 187
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235 Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=62.93 E-value=6.5 Score=18.63 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE---ECCCHHHHH
Q ss_conf 71058999999999986499899998803898998511379799978989999999984478989999---771325489
Q gi|254781101|r 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSCGFY 458 (472)
Q Consensus 382 G~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLi---KGSr~~~le 458 (472)
|.+|+. -..+-.+.+...||+.=... .-.+..-...++|-..+.+.++||.|+|+ +--|+..|+
T Consensus 139 G~fSE~----tL~~t~~LGY~~vFWSlAy~---------DW~~D~Q~G~~~A~~~im~~~HpGai~LLHAVS~dNA~aLd 205 (225)
T TIGR02884 139 GKFSER----TLAYTKELGYKTVFWSLAYK---------DWEVDKQKGKEYAYKQIMKKIHPGAILLLHAVSKDNAEALD 205 (225)
T ss_pred CCCHHH----HHHHHHHCCCCEEEEEEEEC---------CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 754057----89999974882110012202---------67769877877788777541570241332314745899999
Q ss_pred HHHHHHHHH
Q ss_conf 999999985
Q gi|254781101|r 459 RLINLLLEE 467 (472)
Q Consensus 459 ~iv~~L~~~ 467 (472)
+|++.|+++
T Consensus 206 ~~i~~lk~~ 214 (225)
T TIGR02884 206 EIIKDLKEQ 214 (225)
T ss_pred HHHHHHHHC
T ss_conf 999999865
No 188
>KOG3347 consensus
Probab=62.81 E-value=4.7 Score=19.60 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=19.2
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 39998303--654201233467777520
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
|-|-|||| .||||+.+-++..+.-.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~ 35 (176)
T KOG3347 8 PNILVTGTPGTGKSTLAERLAEKTGLEY 35 (176)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCE
T ss_conf 8879867999880259999999739856
No 189
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=62.68 E-value=3.2 Score=20.70 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 03654201233467777520112
Q gi|254781101|r 115 GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 115 GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
|-.|||||+.=|+--|.+.|+.+
T Consensus 10 GGtGKTT~tANLgVALA~~Gk~V 32 (258)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKV 32 (258)
T ss_pred CCCCHHHEEEHHHHHHHHCCCEE
T ss_conf 89861400000778898609768
No 190
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=62.61 E-value=4.8 Score=19.51 Aligned_cols=29 Identities=38% Similarity=0.412 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCCCEEEEECC--CCCCHHHHHHH
Q ss_conf 999999983069939998303--65420123346
Q gi|254781101|r 96 NKLAVAARLRSKATIIAITGS--VGKTTTKEMLT 127 (472)
Q Consensus 96 ~~la~~~~~~~~~~vI~ITGT--nGKTTt~~~l~ 127 (472)
.-|....+.+.+ |-|+|. .||||+-..+.
T Consensus 16 ~~L~~~v~~~~n---IlIsG~tGSGKTTll~al~ 46 (186)
T cd01130 16 AYLWLAVEARKN---ILISGGTGSGKTTLLNALL 46 (186)
T ss_pred HHHHHHHHCCCC---EEEECCCCCCHHHHHHHHH
T ss_conf 999999985998---9998999998999999999
No 191
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=62.60 E-value=2.7 Score=21.23 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99983036542012334677775
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIALSS 132 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL~~ 132 (472)
|.||.|| ||||+...|+.-|..
T Consensus 4 v~GvsGs-GKSTia~~La~~lg~ 25 (150)
T cd02021 4 VMGVSGS-GKSTVGKALAERLGA 25 (150)
T ss_pred EECCCCC-CHHHHHHHHHHHHCC
T ss_conf 9918999-999999999997199
No 192
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=62.51 E-value=4 Score=20.06 Aligned_cols=27 Identities=44% Similarity=0.493 Sum_probs=20.7
Q ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 998303---654201233467777520112
Q gi|254781101|r 111 IAITGS---VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 111 I~ITGT---nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+=|||| .|||.++..|.+.|++.|..+
T Consensus 5 ~FITGTDTdVGKT~vsaaL~~~l~~~G~~v 34 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKSV 34 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 799878999539999999999999789948
No 193
>KOG2792 consensus
Probab=62.27 E-value=4.6 Score=19.67 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=5.7
Q ss_pred EECCCCCCHHH
Q ss_conf 83036542012
Q gi|254781101|r 113 ITGSVGKTTTK 123 (472)
Q Consensus 113 ITGTnGKTTt~ 123 (472)
++.+||++..+
T Consensus 39 ~~~~~~~s~~~ 49 (280)
T KOG2792 39 LLETNGLSPLA 49 (280)
T ss_pred EECCCCCCCCC
T ss_conf 32257888756
No 194
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=62.19 E-value=6.2 Score=18.80 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCEEEEE---CCCCCCHHHHHH-HHHHHHHHCC
Q ss_conf 9399983---036542012334-6777752011
Q gi|254781101|r 108 ATIIAIT---GSVGKTTTKEML-TIALSSIKKT 136 (472)
Q Consensus 108 ~~vI~IT---GTnGKTTt~~~l-~~iL~~~~~~ 136 (472)
.++|+|+ |-.||||++.-+ +.+++..+++
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~ 34 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKV 34 (262)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 789999845887568989986999999648976
No 195
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=62.08 E-value=3.5 Score=20.43 Aligned_cols=28 Identities=29% Similarity=0.441 Sum_probs=22.4
Q ss_pred EEEE---ECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9998---303654201233467777520112
Q gi|254781101|r 110 IIAI---TGSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 110 vI~I---TGTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
||+| -|-.|||||+--++..|...|+.+
T Consensus 2 IIaVaNqKGGvGKTTtavnLA~aLA~~G~rV 32 (261)
T pfam09140 2 VIVVGNEKGGSGKSTTAVHVAVALLYLGARV 32 (261)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 7999717898729999999999999889978
No 196
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=61.98 E-value=11 Score=17.15 Aligned_cols=33 Identities=36% Similarity=0.371 Sum_probs=26.6
Q ss_pred HHCCCCCEEEEECCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 830699399983036------542012334677775201
Q gi|254781101|r 103 RLRSKATIIAITGSV------GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 103 ~~~~~~~vI~ITGTn------GKTTt~~~l~~iL~~~~~ 135 (472)
.++.+++.|-||+-+ |||||+==|.+-|...|+
T Consensus 33 ~~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~~gk 71 (524)
T cd00477 33 EKRPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGK 71 (524)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 348995599998468888888853109989999987366
No 197
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=61.82 E-value=3.2 Score=20.71 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCE--EEECCCCCCCHHHHHHHHHHC
Q ss_conf 88998727999526887147467740222378988--897168874768889999986
Q gi|254781101|r 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA--FFAIKGPHYDGHDFILHAVQK 63 (472)
Q Consensus 8 ~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~l--Fval~g~~~DGh~~i~~A~~~ 63 (472)
+-+++.++ +.......-.|.|..-+.|..|.- ++=+.+....|-+-+.+.+++
T Consensus 56 ri~Ak~lN---C~~~~~~~pCg~C~~C~~i~~g~~~D~~EiDaAs~~~vdd~R~l~~~ 110 (704)
T PRK08691 56 RILAKSLN---CENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN 110 (704)
T ss_pred HHHHHHHC---CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999967---99999999787777678785589987477424544588999999985
No 198
>PRK04507 consensus
Probab=61.21 E-value=10 Score=17.32 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=7.8
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 6532101257778741
Q gi|254781101|r 348 ANPASMKAAISVLSQI 363 (472)
Q Consensus 348 AnP~S~~aal~~l~~~ 363 (472)
|||.||.+|++.-.++
T Consensus 304 A~~~s~~~Ai~la~~~ 319 (323)
T PRK04507 304 ADPSSLMAATALCARL 319 (323)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9969999999999999
No 199
>pfam08353 DUF1727 Domain of unknown function (DUF1727). This domain of unknown function is found at the C-terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=61.05 E-value=11 Score=17.04 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC----CCCE
Q ss_conf 532101257778741110268713885123541710589999999999864998999988038989985113----7979
Q gi|254781101|r 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHV 424 (472)
Q Consensus 349 nP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~----~~~~ 424 (472)
||.++..+|+.+..-+. +...++.+-|-.-=|.+-..+..-=.+.+.. .+..+++.|..+..++--++- ..++
T Consensus 4 NP~G~~~~l~~i~~~~~--~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~-~~~~vivsG~Ra~DmAlRLkyAGv~~~~i 80 (110)
T pfam08353 4 NPAGLNEVLDMLATDPG--PKSLVILLNDNYADGRDVSWIWDVDFEKLNQ-NIRNIVVSGERAYDMALRLKYAGVPEEKI 80 (110)
T ss_pred CCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCEEEECCHHHHCC-CCCEEEEECCCHHHHHHHEEECCCCHHHE
T ss_conf 83769999999853899--8549999658577886563640456778354-77679997352999786723368377781
Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9978989999999984478989999
Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVV 449 (472)
Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLi 449 (472)
...++.+++++.+.. .+++.+.+
T Consensus 81 ~v~~d~~~ai~~~~~--~~~~~~yi 103 (110)
T pfam08353 81 IVEPDLEQAIEAIEE--SPTKTVYI 103 (110)
T ss_pred EECCCHHHHHHHHHH--CCCCEEEE
T ss_conf 762899999999986--89981999
No 200
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=60.69 E-value=5.7 Score=19.03 Aligned_cols=24 Identities=54% Similarity=0.553 Sum_probs=18.3
Q ss_pred EEEEECC--CCCCHHHHH-HHHHHHHH
Q ss_conf 9998303--654201233-46777752
Q gi|254781101|r 110 IIAITGS--VGKTTTKEM-LTIALSSI 133 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~-l~~iL~~~ 133 (472)
.|||||- .||||.+.+ +..+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~ 28 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG 28 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 699965997658999999999998648
No 201
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit; InterPro: IPR005683 The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins.The inner membrane translocase is formed of a complex with a number of proteins, including the Tim17, Tim23 and Tim44 subunits. This family is specific for the Tom22 proteins. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane.
Probab=60.25 E-value=2.1 Score=21.89 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHC
Q ss_conf 365420123346777752011222122110145741000123221444301
Q gi|254781101|r 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 (472)
Q Consensus 116 TnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E 166 (472)
+|+=.||+.++...+...|+..++...--=.||||+++ .+.++..|+-+|
T Consensus 78 ~~~~~ttt~fv~~~~~f~G~~aW~~stsaLLlGVPf~~-s~~eeq~l~emE 127 (152)
T TIGR00986 78 ADKYSTTTSFVKKLLSFAGKAAWAVSTSALLLGVPFAL-SLAEEQQLIEME 127 (152)
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 01100255899999876044578999989998889999-999876899998
No 202
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=60.21 E-value=5.1 Score=19.35 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 998303---654201233467777520112
Q gi|254781101|r 111 IAITGS---VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 111 I~ITGT---nGKTTt~~~l~~iL~~~~~~~ 137 (472)
|=|||| .|||+++..|.+.|++.|..+
T Consensus 2 ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v 31 (223)
T PRK00090 2 LFVTGTDTGVGKTVVTAALAQALREQGYRV 31 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 899868999769999999999999789948
No 203
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=60.05 E-value=4.1 Score=19.99 Aligned_cols=73 Identities=29% Similarity=0.320 Sum_probs=43.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 98303654201233467777520112221221101457410001232214443015664433211212232322025553
Q gi|254781101|r 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 (472)
Q Consensus 112 ~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTN 191 (472)
.--|-.||||++-.++..|...|..+ -+..++++.|+.++-...+ .+.... .-+..-|. +|.-
T Consensus 6 n~KGGvGKtt~~~~la~~~a~~g~~v--------------l~iD~DpQyD~iiIDtpp~-~~~~~~-~al~~aD~-viiP 68 (104)
T cd02042 6 NQKGGVGKTTTAVNLAAALARRGKRV--------------LLIDLDPQYDYIIIDTPPS-LGLLTR-NALAAADL-VLIP 68 (104)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEE--------------EEEECCCCCCEEEEECCCC-CCHHHH-HHHHHCCE-EEEE
T ss_conf 38998768999999999999779929--------------9997798888899979499-989999-99997899-9998
Q ss_pred ECCCHHHHHH
Q ss_conf 1210123444
Q gi|254781101|r 192 IAPAHLSNFS 201 (472)
Q Consensus 192 I~~dHld~~~ 201 (472)
+.++-.+..+
T Consensus 69 ~~p~~~~~~~ 78 (104)
T cd02042 69 VQPSPLDLDG 78 (104)
T ss_pred CCCCHHHHHH
T ss_conf 3698899999
No 204
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=59.83 E-value=6.6 Score=18.60 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=21.0
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 39998303--6542012334677775201
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
|+|.|.|. .||||...+|...|...|.
T Consensus 1 p~v~i~G~~~sGKttl~~~L~~~~~~~g~ 29 (122)
T pfam03205 1 PIVLVVGPKDSGKTTLIRKLLNYLKRRGY 29 (122)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 97999948999899999999999998799
No 205
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.47 E-value=5 Score=19.43 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCC
Q ss_conf 99983036542012334677775-20-112
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIALSS-IK-KTY 137 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL~~-~~-~~~ 137 (472)
|...-|-.|||||+-.++..|.. .+ +|.
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 985788851999999999999983899789
No 206
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=59.38 E-value=4.3 Score=19.84 Aligned_cols=29 Identities=45% Similarity=0.573 Sum_probs=22.9
Q ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399983--03654201233467777520112
Q gi|254781101|r 109 TIIAIT--GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~IT--GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
+-|||- |-.|||||+.=|+..|...|+.+
T Consensus 2 ~~iaiyGKGGVGKSTTt~NLaAALA~~GkkV 32 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKI 32 (273)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 5799979986658878999999999779969
No 207
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=58.92 E-value=4.6 Score=19.62 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||+|.| ||||.-.++.-+++.
T Consensus 24 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 52 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79959999999999999999999667788
No 208
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=58.79 E-value=4.3 Score=19.82 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=22.8
Q ss_pred EEEEE--CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99983--036542012334677775201122
Q gi|254781101|r 110 IIAIT--GSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 110 vI~IT--GTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
.|||- |-.|||||+.-++..|...|+.+-
T Consensus 2 kiaiyGKGGIGKSTttaNl~aaLA~~G~kVl 32 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 7999779965787789999999998799599
No 209
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=58.70 E-value=12 Score=16.78 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHH--HHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH----HHHHHCCC
Q ss_conf 565321012577--787411102687138851235417105899999999998649989999880389----89985113
Q gi|254781101|r 347 NANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----ALKDALPR 420 (472)
Q Consensus 347 NAnP~S~~aal~--~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~----~~~~~~~~ 420 (472)
+.+|+ ++.|+ ++++......|.+|+++||.+ ++.--|.. ...+...+ -.|+++|+..- .+.+.+..
T Consensus 136 ~qHPT--Q~LLDl~TI~~~~G~~~gl~iaivGDlk----hsRva~S~-~~~L~~~g-a~v~lvsP~~L~~p~~i~~~l~~ 207 (316)
T COG0540 136 HQHPT--QALLDLYTIREEFGRLDGLKIAIVGDLK----HSRVAHSN-IQALKRFG-AEVYLVSPETLLPPEYILEELEE 207 (316)
T ss_pred CCCCC--HHHHHHHHHHHHHCCCCCCEEEEECCCC----CHHHHHHH-HHHHHHCC-CEEEEECCHHHCCCHHHHHHHHH
T ss_conf 98952--8999999999984876794799982544----11888877-99999819-87999886586794657888762
Q ss_pred C-CCEEEECCHHHH
Q ss_conf 7-979997898999
Q gi|254781101|r 421 S-IHVHYSETMDGL 433 (472)
Q Consensus 421 ~-~~~~~~~~~e~a 433 (472)
. ....+.+..+++
T Consensus 208 ~~~~~~~~~~~e~~ 221 (316)
T COG0540 208 KGGVVVEHDSDEEV 221 (316)
T ss_pred CCCEEEEECCHHHH
T ss_conf 48527981466664
No 210
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=58.33 E-value=4.5 Score=19.73 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=23.1
Q ss_pred CEEEE--ECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 39998--3036542012334677775201122
Q gi|254781101|r 109 TIIAI--TGSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 109 ~vI~I--TGTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
+-||| -|-.|||||+.=|+..|...|+.+-
T Consensus 2 ~~iaiyGKGGVGKSTtt~NLaAALA~~GkkVl 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 67999799855476789999999997899799
No 211
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=58.27 E-value=11 Score=17.18 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE-EECC
Q ss_conf 035676510121034554311476644331010003653113310002565321012577787411102687138-8512
Q gi|254781101|r 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA-VLGD 377 (472)
Q Consensus 299 Aia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~-VlG~ 377 (472)
.-++|..||+++=.++ |.|.+.++-+ |+.-..+|+.|+. ++.||=-. |+|.
T Consensus 261 V~gaCE~LGldPl~lA--------------------NEG~~v~~V~-----~E~A~~vLe~lk~---hp~G~~A~YiIG~ 312 (345)
T TIGR02124 261 VKGACELLGLDPLYLA--------------------NEGKLVLAVP-----PEAAEKVLEILKS---HPLGKDAAYIIGE 312 (345)
T ss_pred HHHHHHHHCCCHHHHH--------------------CCCEEEEEEC-----HHHHHHHHHHHHH---CCCCCCCCEEEEE
T ss_conf 9999986170325420--------------------4762899828-----3779999999860---7764332156301
No 212
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=58.01 E-value=12 Score=16.91 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=5.6
Q ss_pred HCCCCHHHHHHHHC
Q ss_conf 10121034554311
Q gi|254781101|r 306 LTADVDTAIKALSV 319 (472)
Q Consensus 306 lGi~~~~i~~~L~~ 319 (472)
.+.+.++..+.|..
T Consensus 47 ~~~~~~~~l~~l~~ 60 (158)
T TIGR03180 47 QNLSEQDLFEALAG 60 (158)
T ss_pred HHCCHHHHHHHHHH
T ss_conf 81999999999980
No 213
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=57.99 E-value=5.7 Score=19.01 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHHHCC
Q ss_conf 699399983036--5420123346777752011
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~~ 136 (472)
.++..|||.|.+ ||||.-.+|..++...|.+
T Consensus 28 ~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~G~I 60 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60 (275)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 799999999999997999999996035789539
No 214
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=57.98 E-value=9 Score=17.71 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=18.7
Q ss_pred CCCEEEEECCC--CCCHHHHH--HHHHHHHHH
Q ss_conf 99399983036--54201233--467777520
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEM--LTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~--l~~iL~~~~ 134 (472)
+.+++=|||.| ||||.-.. +..+|.+.|
T Consensus 27 ~~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G 58 (200)
T cd03280 27 NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSG 58 (200)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 93399998898775099999999999999977
No 215
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=57.57 E-value=4.5 Score=19.68 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.0
Q ss_pred ECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 30365420123346777752011
Q gi|254781101|r 114 TGSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 114 TGTnGKTTt~~~l~~iL~~~~~~ 136 (472)
-|-.||||++.-++..|+..|+.
T Consensus 7 KGGVGKTTvAaalA~~lA~~G~r 29 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKK 29 (217)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 99661999999999999968994
No 216
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=57.52 E-value=8.4 Score=17.92 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=19.0
Q ss_pred CCEEEEECCC--CCCHHHHHHHHHHHHHHC
Q ss_conf 9399983036--542012334677775201
Q gi|254781101|r 108 ATIIAITGSV--GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 108 ~~vI~ITGTn--GKTTt~~~l~~iL~~~~~ 135 (472)
+.||++.|-+ |||||..=|+..+...++
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~ 30 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGK 30 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 969999899999889999999999997799
No 217
>PRK00698 tmk thymidylate kinase; Validated
Probab=57.36 E-value=8.6 Score=17.85 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=24.1
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 9939998303--6542012334677775201
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
++..|+|-|- .||||...+|+.-|...|.
T Consensus 2 kG~fIviEGiDGsGKsTq~~~L~~~L~~~g~ 32 (204)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLAERLEEQGR 32 (204)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8319999889999899999999999996799
No 218
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=57.33 E-value=4.7 Score=19.55 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEE--CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99983--0365420123346777752011
Q gi|254781101|r 110 IIAIT--GSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 110 vI~IT--GTnGKTTt~~~l~~iL~~~~~~ 136 (472)
+|=+| |-.||||++.-++.-|...|+.
T Consensus 2 ~i~~~GKGGVGKTT~AaalA~~lA~~G~k 30 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKK 30 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 89996898554899999999999968994
No 219
>PRK03367 consensus
Probab=57.11 E-value=13 Score=16.61 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=8.7
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 65321012577787411
Q gi|254781101|r 348 ANPASMKAAISVLSQIS 364 (472)
Q Consensus 348 AnP~S~~aal~~l~~~~ 364 (472)
|||.||.+|++.-.++.
T Consensus 309 A~~~s~~~Ai~~A~~~~ 325 (329)
T PRK03367 309 ADVGSFITALNLAIKMI 325 (329)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 99699999999999998
No 220
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=57.06 E-value=13 Score=16.60 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=30.3
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 113310002565321012577787411102687138851235417105899999999998649989999880
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~ 409 (472)
.+.++||== .+-.+|..|.+.|+.. +. ++|.+...= |-.+..- .+.+...+++.|+..-.
T Consensus 210 ~vIIvDDiI-~TGgTl~~aa~~Lk~~---GA-~~V~~~~TH---glfs~~A----~~rl~~s~i~~iv~TnT 269 (309)
T PRK01259 210 DCILVDDMI-DTGGTLCKAAEALKER---GA-KSVFAYATH---PVLSGGA----AERIANSVLDELVVTDS 269 (309)
T ss_pred EEEEECCHH-HCCHHHHHHHHHHHHC---CC-CEEEEEEEC---HHCCHHH----HHHHHHCCCCEEEEECC
T ss_conf 399976534-3456599999999756---99-669999876---3139459----99987089988998189
No 221
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=56.78 E-value=8.6 Score=17.84 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHH
Q ss_conf 35678899872799952688714746774022237898889716887476888
Q gi|254781101|r 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 (472)
Q Consensus 4 ~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~ 56 (472)
|..+.+.++-+.|+-.... ..+++-+. +-..+|+++.+..+.-|
T Consensus 1 m~~leevlr~L~g~~y~ay--k~lTg~s~-------d~g~yavr~~d~q~dpv 44 (554)
T COG3044 1 MDRLEEVLRKLEGQNYRAY--KQLTGASY-------DFGDYAVRIDDIQSDPV 44 (554)
T ss_pred CCCHHHHHHHHHCCCCHHH--HHHCCCCC-------CCCEEEEECCCCCCCCC
T ss_conf 9328999987624530136--76424444-------65405897345666633
No 222
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=56.77 E-value=11 Score=17.15 Aligned_cols=33 Identities=33% Similarity=0.329 Sum_probs=25.4
Q ss_pred HHCCCCCEEEEECCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 830699399983036------542012334677775201
Q gi|254781101|r 103 RLRSKATIIAITGSV------GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 103 ~~~~~~~vI~ITGTn------GKTTt~~~l~~iL~~~~~ 135 (472)
..+.+++.|-||+-+ |||||+==|++-|...|+
T Consensus 49 ~~~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~lgk 87 (556)
T PRK13505 49 KDKKDGKLILVTAINPTPAGEGKTTVTVGLGDALNKIGK 87 (556)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 248996399998458888888863017989999987187
No 223
>PRK10437 carbonic anhydrase; Provisional
Probab=56.69 E-value=10 Score=17.31 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=13.5
Q ss_pred CCCCCEEEEEEEECCC-------CCCCCEEEE
Q ss_conf 6887147467740222-------378988897
Q gi|254781101|r 21 IVPQGFVNGISIDSRS-------IAPQEAFFA 45 (472)
Q Consensus 21 ~~~~~~i~~i~~dSr~-------v~~g~lFva 45 (472)
..|...+=+ |.|||- .+||++||-
T Consensus 33 Q~P~~L~Ig-CsDSRV~p~~I~~~~PGelFV~ 63 (220)
T PRK10437 33 QKPRFLWIG-CSDSRVPAERLTGLEPGELFVH 63 (220)
T ss_pred CCCCEEEEE-ECCCCCCHHHHCCCCCCCEEEE
T ss_conf 999849997-3377889999738998667899
No 224
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=56.63 E-value=10 Score=17.31 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=45.5
Q ss_pred CCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 64433101000365311331000256532101257778741110268713885123541710589999999999864998
Q gi|254781101|r 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472)
Q Consensus 323 ~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472)
+-||-+.++..... +..+-..+++.||.+|.+.+.+|..+..... +.-.|. ...+.+...+-+.+.+.+++
T Consensus 279 ~gGr~eiM~~~~p~-g~vyqaGT~sgnplamaAG~atl~~l~~~~~-----~y~~l~---~~~~~L~~gl~~~~~~~g~~ 349 (432)
T COG0001 279 FGGRAEIMEQLAPL-GPVYQAGTLSGNPLAMAAGLATLEELMTEEG-----VYERLD---ALGERLAEGLRAAAERHGIP 349 (432)
T ss_pred ECCHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-----HHHHHH---HHHHHHHHHHHHHHHHHCCC
T ss_conf 25699999632778-8764567778868999999999999873651-----899999---99999999999999983998
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254781101|r 403 HVWL 406 (472)
Q Consensus 403 ~v~~ 406 (472)
..+.
T Consensus 350 ~~v~ 353 (432)
T COG0001 350 LTVN 353 (432)
T ss_pred EEEE
T ss_conf 5886
No 225
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=56.42 E-value=3.8 Score=20.17 Aligned_cols=37 Identities=32% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99999999983069939998303654201233467777
Q gi|254781101|r 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 (472)
Q Consensus 94 al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~ 131 (472)
-|..+-.-=..++++-.||=||| |||-.+.-||..|.
T Consensus 141 elehleeVEL~KSNILLiGPTGS-GKTLLAqTLA~~L~ 177 (452)
T TIGR00382 141 ELEHLEEVELSKSNILLIGPTGS-GKTLLAQTLARILN 177 (452)
T ss_pred HHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHHCC
T ss_conf 35444443330066245468885-26899999998738
No 226
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=56.26 E-value=5.3 Score=19.24 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHHHHCC
Q ss_conf 99399983036--5420123346777752011
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~~ 136 (472)
++.++||.|.| ||||.-.++.-++...|.+
T Consensus 22 ~Ge~v~iiGpNGaGKSTLlk~i~Gl~p~~G~I 53 (245)
T PRK03695 22 AGEILHLVGPNGAGKSTLLARMAGLLSGSGEI 53 (245)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 99899999789941999999984668889659
No 227
>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalysed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Probab=56.09 E-value=14 Score=16.50 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=4.6
Q ss_pred CCCCCHHHHHH
Q ss_conf 65321012577
Q gi|254781101|r 348 ANPASMKAAIS 358 (472)
Q Consensus 348 AnP~S~~aal~ 358 (472)
|||.||.+|++
T Consensus 286 A~~~s~~~Ai~ 296 (299)
T pfam04166 286 ADPGSLIAALK 296 (299)
T ss_pred CCHHHHHHHHH
T ss_conf 99699999999
No 228
>pfam09818 ABC_ATPase Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.
Probab=56.01 E-value=14 Score=16.49 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=10.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCH
Q ss_conf 9999999864998999988038
Q gi|254781101|r 390 IDLAEVLSLYNISHVWLSGFHV 411 (472)
Q Consensus 390 ~~i~~~~~~~~~d~v~~~G~~~ 411 (472)
..|.+.+ +.+. .++++.|+.
T Consensus 330 AnI~Eal-EaGa-~~lLIDEDT 349 (447)
T pfam09818 330 ANIQEAL-EAGA-SLLLIDEDT 349 (447)
T ss_pred HHHHHHH-HCCC-CEEEECCCC
T ss_conf 9999999-7489-789983564
No 229
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=55.91 E-value=14 Score=16.48 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred EEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC-CCCCCCCEEEECCH----------------HH
Q ss_conf 74022237898889716887476888999998698899985521245-54469728995998----------------99
Q gi|254781101|r 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLSIPVFGVDDV----------------LG 93 (472)
Q Consensus 31 ~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~-~~~~~~~~i~v~d~----------------~~ 93 (472)
-.++..+.+.++==+++-.+..|-.|=+.|++-| +|++.+.... ....+.|++...|. -+
T Consensus 9 l~~~g~i~~~~~~~~l~~q~~~g~rfGea~~~lg---~~t~~di~~als~q~~~py~~~~~~~~~~~l~aa~~P~s~~~E 85 (274)
T TIGR03029 9 LLDAGKLSEDEAERILRLQKQENIRFGEAALRLG---LINEDDIRQALSRQFEYPYLPPNDGSFSPDLIAAYQPFSPQVE 85 (274)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHH
T ss_conf 9982998999999999999984866899999819---9769999999998628987784557889899877389988999
Q ss_pred HHHHHHHHHHH---CCCCCEEEEECC---CCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999983---069939998303---6542012334677775201
Q gi|254781101|r 94 ALNKLAVAARL---RSKATIIAITGS---VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 94 al~~la~~~~~---~~~~~vI~ITGT---nGKTTt~~~l~~iL~~~~~ 135 (472)
+++.|-....- ..+.+.++||.. .|||||..=++..|.+.|+
T Consensus 86 a~R~lRs~l~~~~~~~~~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~ 133 (274)
T TIGR03029 86 ALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGE 133 (274)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999998457888389996899999899999999999996799
No 230
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=55.82 E-value=8.7 Score=17.82 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 993999830--36542012334677775201122
Q gi|254781101|r 107 KATIIAITG--SVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 107 ~~~vI~ITG--TnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
+.++|||=| --||+||+.-++..|...|+.+-
T Consensus 30 ~~~~IAiYGKGGIGKSTts~NlsAAlA~~GkkVm 63 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVL 63 (329)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 4549999768843561688999999997799699
No 231
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=55.19 E-value=11 Score=17.08 Aligned_cols=32 Identities=38% Similarity=0.379 Sum_probs=24.8
Q ss_pred HCCCCCEEEEECCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 30699399983036------542012334677775201
Q gi|254781101|r 104 LRSKATIIAITGSV------GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 104 ~~~~~~vI~ITGTn------GKTTt~~~l~~iL~~~~~ 135 (472)
.+.+++.|-||+-+ |||||+==|++-|...|+
T Consensus 50 ~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk 87 (555)
T pfam01268 50 DRPDGKLILVTAITPTPAGEGKTTTTIGLGQALNRLGK 87 (555)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCC
T ss_conf 48985399998457888888863023659999986287
No 232
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=55.19 E-value=6.1 Score=18.86 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.+++++|-| ||||.-.++.-+++.
T Consensus 25 ~~G~i~~l~G~NGaGKSTLlkli~Gl~~p 53 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79979999889998799999999778588
No 233
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase; InterPro: IPR011904 Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) is a ubiquitous enzyme, found in both prokaryotes and eukaryotes, which catalyses the formation of acetyl-CoA from acetate, coenzyme A (CoA) and ATP as shown below : ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. It is especially important in eukayotic species as it is the only route for the activation of acetate to acetyl-CoA in these organisms (some prokaryotic species can also activate acetate by either acetate kinase/phosphotransacetylase or by ADP-forming acetyl-CoA synthase). Eukaryotes typically have two isoforms of acetyl-CoA synthase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. The crystal structures of a eukaryotic (Q01574 from SWISSPROT, from yeast) and bacterial (Q8ZKF6 from SWISSPROT, from Salmonella) form of this enzyme have been determined , . The yeast enzyme is trimeric, while the bacterial enzyme is monomeric. The trimeric state of the yeast protein may be unique to this organism however, as the residues involved in the trimer interface are poorly conserved in other sequences. Despite differences in the oligomeric state of the two enzyme, the structures of the monomers are almost identical. A large N-terminal domain (~500 residues) containing two parallel beta sheets is followed by a small (~110 residues) C-terminal domain containing a three-stranded beta sheet with helices. The active site occurs at the domain interface, with its contents determining the orientation of the C-terminal domain.; GO: 0003987 acetate-CoA ligase activity, 0016208 AMP binding.
Probab=54.99 E-value=14 Score=16.38 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=50.1
Q ss_pred CCCCCCEEEECCCC--CCCHHHHHHH-HHHCCCEEEEECCCCCCC--------CCCCCCCEEEEC-CHHHHHHHHHHHHH
Q ss_conf 23789888971688--7476888999-998698899985521245--------544697289959-98999999999998
Q gi|254781101|r 36 SIAPQEAFFAIKGP--HYDGHDFILH-AVQKGAGLVVVNTDMVAS--------IGSLSIPVFGVD-DVLGALNKLAVAAR 103 (472)
Q Consensus 36 ~v~~g~lFval~g~--~~DGh~~i~~-A~~~Ga~~~i~~~~~~~~--------~~~~~~~~i~v~-d~~~al~~la~~~~ 103 (472)
+++|+|+|.|- +. -.-||.||=- =+.+||+.++-|--...+ .....+.++..+ =..++|.+++..+.
T Consensus 286 D~~d~D~fWCT-ADvGWiTGHSYiVYGPL~~GAT~~mfEG~P~YP~~~R~W~~iekh~vtiFYTAPTAIR~L~r~G~~~~ 364 (643)
T TIGR02188 286 DIKDGDIFWCT-ADVGWITGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV 364 (643)
T ss_pred ECCCCCEEEEE-CCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHCCHHH
T ss_conf 03799626862-11200205324012422115317874377833278767855331576503315689999986111213
Q ss_pred HCCCCCEEEEECCCC
Q ss_conf 306993999830365
Q gi|254781101|r 104 LRSKATIIAITGSVG 118 (472)
Q Consensus 104 ~~~~~~vI~ITGTnG 118 (472)
++++.-=.=|=||.|
T Consensus 365 ~k~DlSSLR~LGSVG 379 (643)
T TIGR02188 365 KKHDLSSLRLLGSVG 379 (643)
T ss_pred HHCCCCCEEECCCCC
T ss_conf 441764001502568
No 234
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=54.96 E-value=7.1 Score=18.41 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.2
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 939998303--6542012334677775
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
.|+|+|+|+ .||||...-++.+++.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 513556457665717999999999688
No 235
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=54.93 E-value=14 Score=16.38 Aligned_cols=84 Identities=25% Similarity=0.196 Sum_probs=50.0
Q ss_pred ECCCCCC-CCEEEECCCCCCCHHHHHHHHHHCCC-EEEEECCCCCC-CCCCCCCCEEEEC---CHHHHHHHHHHHHHHCC
Q ss_conf 0222378-98889716887476888999998698-89998552124-5544697289959---98999999999998306
Q gi|254781101|r 33 DSRSIAP-QEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVA-SIGSLSIPVFGVD---DVLGALNKLAVAARLRS 106 (472)
Q Consensus 33 dSr~v~~-g~lFval~g~~~DGh~~i~~A~~~Ga-~~~i~~~~~~~-~~~~~~~~~i~v~---d~~~al~~la~~~~~~~ 106 (472)
.+++++| ..+.||==|-..-|-+++...+...+ .-+++.+++.. .-.+.+.-+|.|+ +|.+.|..+..+.++
T Consensus 27 ~~~~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~~y~lP~~v~~~tLVIavSySGnTeETL~a~~~A~~r-- 104 (328)
T PRK08674 27 IEVEIEPYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVRDYFLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKKR-- 104 (328)
T ss_pred CHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--
T ss_conf 110147657299995756489999999998447998679855887998658885799982899977999999999975--
Q ss_pred CCCEEEEECCCCC
Q ss_conf 9939998303654
Q gi|254781101|r 107 KATIIAITGSVGK 119 (472)
Q Consensus 107 ~~~vI~ITGTnGK 119 (472)
..++|+|| |.||
T Consensus 105 ga~vi~It-sGG~ 116 (328)
T PRK08674 105 GAKIIAIT-SGGK 116 (328)
T ss_pred CCCEEEEE-CCCC
T ss_conf 99589994-8970
No 236
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=54.43 E-value=14 Score=16.47 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC--EEEEE-CCCHHHHHH---HHHHH
Q ss_conf 9999998649989999880389899851137979997898999999998447898--99997-713254899---99999
Q gi|254781101|r 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVK-SSNSCGFYR---LINLL 464 (472)
Q Consensus 391 ~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gd--iVLiK-GSr~~~le~---iv~~L 464 (472)
.+.+.+.+...|.+++...+..+..+.+.+-. ..+++++.-+.+++.+.+.. .+.+. ||---++++ ++++|
T Consensus 329 ~l~~~a~~~~yDL~Lll~~DvpwVdDGlRd~~---~~~~R~~f~~~lk~lL~k~ni~yv~I~~~~y~eR~~kAi~~Id~l 405 (411)
T PRK08099 329 FVQALIDEYRFDLVILLENNTPWVADGLRSLG---SSVDRKRFQNLLVEMLEENNIEYVRVESPDYDARFLRCVELVDQM 405 (411)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 99999863587789980899875567876667---888999999999999998199769971788899999999999999
Q ss_pred HHH
Q ss_conf 985
Q gi|254781101|r 465 LEE 467 (472)
Q Consensus 465 ~~~ 467 (472)
+++
T Consensus 406 L~~ 408 (411)
T PRK08099 406 LGE 408 (411)
T ss_pred HHC
T ss_conf 714
No 237
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=54.17 E-value=15 Score=16.30 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=20.1
Q ss_pred HHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEE
Q ss_conf 78899872799952688714746774022237898889
Q gi|254781101|r 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFF 44 (472)
Q Consensus 7 ~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFv 44 (472)
.-+.++.+|..+........|+|... .....+..+++
T Consensus 56 ti~al~~LG~~I~~~~~~~~I~G~g~-~~~~~~~~l~~ 92 (662)
T PRK11860 56 MLDALRQLGCGVEQAGDTVRITGLGG-QLPVKKADLFL 92 (662)
T ss_pred HHHHHHHCCCEEEECCCEEEEEECCC-CCCCCCCEEEC
T ss_conf 99999986996996599899990788-87899865773
No 238
>pfam09905 DUF2132 Uncharacterized conserved protein (DUF2132). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.99 E-value=5 Score=19.42 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=33.2
Q ss_pred HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 10121034554311476644331010003653113310002565321012577787411
Q gi|254781101|r 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 (472)
Q Consensus 306 lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~ 364 (472)
-|+.++.|...|...-++++-.+++++ .|++.|| |++++|++|+..+
T Consensus 7 HGvtLe~il~~Lv~~yGW~~L~~~i~i-----------~CF~~~P-sikSSLkFLRkTp 53 (64)
T pfam09905 7 HGLKLETILTELVEHYGWEELGERINI-----------NCFKNNP-SIKSSLKFLRKTP 53 (64)
T ss_pred CCCHHHHHHHHHHHHHCHHHHHHHCCC-----------CCCCCCC-CHHHHHHHHHCCH
T ss_conf 400399999999998698999845571-----------5178999-6688999991598
No 239
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=53.86 E-value=9.4 Score=17.58 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=18.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
+++ ++||.|-| ||||.-.++..+|.
T Consensus 21 p~G-itaIvGpsGsGKSTLl~~i~~~lg 47 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 898-289999999988999999998747
No 240
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=53.60 E-value=10 Score=17.30 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHCCC-CCEEEE-ECCCHHHHHHHHHHHHHHCC
Q ss_conf 989999999984478-989999-77132548999999998505
Q gi|254781101|r 429 TMDGLFLFIQSSLVD-GDVVVV-KSSNSCGFYRLINLLLEEFP 469 (472)
Q Consensus 429 ~~e~a~~~l~~~~~~-gdiVLi-KGSr~~~le~iv~~L~~~~~ 469 (472)
+-|-|++.+.+.... -|.|+- -|. .+||-++..|+++|-
T Consensus 419 ~EEGAVQv~~~l~~~krD~I~~AVG~--LQF~VV~~RL~~EY~ 459 (530)
T TIGR00503 419 SEEGAVQVLRPLDNNKRDLIVGAVGV--LQFDVVVYRLKEEYN 459 (530)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHCCCC
T ss_conf 22643232311321477605542011--468899887300134
No 241
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=53.52 E-value=14 Score=16.37 Aligned_cols=41 Identities=29% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHH----CCCCC--EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999983----06993--9998303654201233467777520
Q gi|254781101|r 93 GALNKLAVAARL----RSKAT--IIAITGSVGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 93 ~al~~la~~~~~----~~~~~--vI~ITGTnGKTTt~~~l~~iL~~~~ 134 (472)
+-+.+++.+... ..+.. +.|.+|| |||+|...+..-|+...
T Consensus 37 ~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGT-GKT~~vk~v~~~l~~~~ 83 (394)
T PRK00411 37 EQIEELAFALRPALRGSRPSNVLILGPPGT-GKTTTVKKVFEELEEAA 83 (394)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHC
T ss_conf 999999999999975999984799889999-89999999999999746
No 242
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=53.46 E-value=5.6 Score=19.06 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 654201233467777520
Q gi|254781101|r 117 VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 117 nGKTTt~~~l~~iL~~~~ 134 (472)
-||||++.+|+.++..-+
T Consensus 53 TGKTTVAR~~gklf~emn 70 (261)
T TIGR02881 53 TGKTTVARLLGKLFKEMN 70 (261)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 843899999999985337
No 243
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=53.34 E-value=6.3 Score=18.73 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH-HHCC
Q ss_conf 699399983036--542012334677775-2011
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS-IKKT 136 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~-~~~~ 136 (472)
.++.+++|+|.| ||||.-.++.-+++. .|.+
T Consensus 24 ~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I 57 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57 (195)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 7997999999999819999999967988984089
No 244
>PRK07078 hypothetical protein; Validated
Probab=53.20 E-value=6.4 Score=18.72 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=11.3
Q ss_pred ECCCCCCHHHHHHHHHHHHH
Q ss_conf 30365420123346777752
Q gi|254781101|r 114 TGSVGKTTTKEMLTIALSSI 133 (472)
Q Consensus 114 TGTnGKTTt~~~l~~iL~~~ 133 (472)
+|.|||+|.-+.|..+|...
T Consensus 250 ~G~NGKStf~~vl~~lLGdY 269 (510)
T PRK07078 250 TGANGKSVFVNTLATILGDY 269 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 89884789999999986566
No 245
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=52.66 E-value=6.6 Score=18.62 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=15.4
Q ss_pred EEEE---CCCCCCHHHHHHHHHHH
Q ss_conf 9983---03654201233467777
Q gi|254781101|r 111 IAIT---GSVGKTTTKEMLTIALS 131 (472)
Q Consensus 111 I~IT---GTnGKTTt~~~l~~iL~ 131 (472)
|+|+ |-.||||++.-|+..|.
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l~ 25 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALLK 25 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 899958998609999999999742
No 246
>KOG2182 consensus
Probab=52.43 E-value=16 Score=16.12 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=63.0
Q ss_pred EECCCCCC-CCEEEECCCCC--------CCHHHHHHHHHHCCCEEEEECCCCCC---CCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 40222378-98889716887--------47688899999869889998552124---55446972899599899999999
Q gi|254781101|r 32 IDSRSIAP-QEAFFAIKGPH--------YDGHDFILHAVQKGAGLVVVNTDMVA---SIGSLSIPVFGVDDVLGALNKLA 99 (472)
Q Consensus 32 ~dSr~v~~-g~lFval~g~~--------~DGh~~i~~A~~~Ga~~~i~~~~~~~---~~~~~~~~~i~v~d~~~al~~la 99 (472)
.++.-.++ |-+|..|-|+- ..+..+..-|.+-||.++..|...-. +..+.+.+-++.=..++||..+|
T Consensus 77 ~n~~~~~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla 156 (514)
T KOG2182 77 NNNQWAKPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLA 156 (514)
T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 01201369996699976778778873356760699999982982688640003667788877640056660898999899
Q ss_pred HHHHHC---C----CCCEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999830---6----99399983036542012334677775201
Q gi|254781101|r 100 VAARLR---S----KATIIAITGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 100 ~~~~~~---~----~~~vI~ITGTnGKTTt~~~l~~iL~~~~~ 135 (472)
.+.... + +.|.|..-||.-= .|+.-.++.++
T Consensus 157 ~fI~~~n~k~n~~~~~~WitFGgSYsG-----sLsAW~R~~yP 194 (514)
T KOG2182 157 EFIKAMNAKFNFSDDSKWITFGGSYSG-----SLSAWFREKYP 194 (514)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCHH-----HHHHHHHHHCC
T ss_conf 999998765277789976997887700-----89999987583
No 247
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.42 E-value=12 Score=16.80 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 79799978989999999984478989999
Q gi|254781101|r 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 (472)
Q Consensus 421 ~~~~~~~~~~e~a~~~l~~~~~~gdiVLi 449 (472)
+.++....+.+++-+.+.. +...|+|||
T Consensus 251 ~vp~~vv~~~~~l~~~l~~-~~~~d~IlI 278 (282)
T TIGR03499 251 GVPVKVARDPKELAKALER-LRDKDLILI 278 (282)
T ss_pred CCEEEEECCHHHHHHHHHH-CCCCCEEEE
T ss_conf 9748993999999999986-579899998
No 248
>PRK13236 nitrogenase reductase; Reviewed
Probab=52.28 E-value=11 Score=17.26 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 993999830--36542012334677775201122
Q gi|254781101|r 107 KATIIAITG--SVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 107 ~~~vI~ITG--TnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
+.+-|||=| --||+||+.-++..|.+.|+.+-
T Consensus 5 ~mk~IAiYGKGGIGKSTts~NlsAAlA~~G~rVl 38 (295)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIL 38 (295)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 7618999679843475789999999997799699
No 249
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=52.12 E-value=6.2 Score=18.80 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=15.6
Q ss_pred EEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 998303--6542012334677775
Q gi|254781101|r 111 IAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 111 I~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
.=.||+ .|||||..+++..|.-
T Consensus 48 ~l~~g~rg~gktt~ari~a~~lnc 71 (600)
T PRK09111 48 FMLTGVRGVGKTTTARILARALNY 71 (600)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 764578987899999999999669
No 250
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.41 E-value=3.7 Score=20.27 Aligned_cols=98 Identities=27% Similarity=0.295 Sum_probs=51.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC----CCCCHHHHHCCCC--CCCHHCCCCCCCHH--HHHCCCCCCCCCCC
Q ss_conf 0699399983036542012334677775201----1222122110145--74100012322144--43015664433211
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKK----TYACIGSYNNHIG--VPLTLARMPVDVDF--GIFELGMSHLGEIR 176 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~----~~~t~gn~Nn~iG--vpltll~~~~~~~~--~V~E~g~~~~gei~ 176 (472)
+++.-+||=||| |||-...-|+.+|.-.+. |.-|..-| +| |.--++++=-.+|| .--|-|+-+..||+
T Consensus 97 KSNILLiGPTGs-GKTlLAqTLAk~LnVPFaiADATtLTEAGY---VGEDVENillkLlqaadydV~rAerGIIyIDEID 172 (408)
T COG1219 97 KSNILLIGPTGS-GKTLLAQTLAKILNVPFAIADATTLTEAGY---VGEDVENILLKLLQAADYDVERAERGIIYIDEID 172 (408)
T ss_pred ECCEEEECCCCC-CHHHHHHHHHHHHCCCEEECCCCCHHHCCC---CCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHH
T ss_conf 031799888997-577999999998489847514441210663---5500899999999876458888828859985102
Q ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2122323220255531210123444578888654331037
Q gi|254781101|r 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 (472)
Q Consensus 177 ~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~ 216 (472)
..++-.. +. +|++| -|=|.+.++=++|+++
T Consensus 173 KIarkSe-n~----SITRD-----VSGEGVQQALLKiiEG 202 (408)
T COG1219 173 KIARKSE-NP----SITRD-----VSGEGVQQALLKIIEG 202 (408)
T ss_pred HHHCCCC-CC----CCCCC-----CCCHHHHHHHHHHHCC
T ss_conf 5420578-98----72343-----6735899999999707
No 251
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=51.26 E-value=7.6 Score=18.20 Aligned_cols=29 Identities=38% Similarity=0.586 Sum_probs=22.7
Q ss_pred EEEE--ECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9998--3036542012334677775201122
Q gi|254781101|r 110 IIAI--TGSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 110 vI~I--TGTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
++|| =|--||+||+.=|+..|+..|+.+-
T Consensus 2 ~lAvYGKGGiGKSTTssNLSvA~A~~GkkVl 32 (275)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVALAKKGKKVL 32 (275)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 6888638887700467899999984699189
No 252
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.94 E-value=17 Score=15.97 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=18.9
Q ss_pred ECCCCCCCCEEEECC--CCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 022237898889716--8874768889999986988999
Q gi|254781101|r 33 DSRSIAPQEAFFAIK--GPHYDGHDFILHAVQKGAGLVV 69 (472)
Q Consensus 33 dSr~v~~g~lFval~--g~~~DGh~~i~~A~~~Ga~~~i 69 (472)
..+.+.+++++|++- |+..|=.+-++.|.++|+..+.
T Consensus 40 ~~~~~~~~~lvI~iS~SG~t~e~i~a~~~a~~~g~~~i~ 78 (126)
T cd05008 40 RRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 478899985999986897980078899999982994898
No 253
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=50.58 E-value=17 Score=15.93 Aligned_cols=13 Identities=62% Similarity=0.912 Sum_probs=6.0
Q ss_pred CEEEEECCCCCCHH
Q ss_conf 39998303654201
Q gi|254781101|r 109 TIIAITGSVGKTTT 122 (472)
Q Consensus 109 ~vI~ITGTnGKTTt 122 (472)
...||||| |||=|
T Consensus 36 tLLGvTGS-GKTfT 48 (663)
T COG0556 36 TLLGVTGS-GKTFT 48 (663)
T ss_pred EEEEECCC-CCHHH
T ss_conf 88620368-83107
No 254
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=50.41 E-value=8.3 Score=17.95 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+.|.| ||||+-.++.-++..
T Consensus 24 ~~GEi~~liG~nGaGKSTll~~l~G~~~p 52 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHCCCCCC
T ss_conf 59969999888999926377876698678
No 255
>PRK04117 consensus
Probab=50.12 E-value=17 Score=15.88 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=41.1
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||== .+-.+|..|.+.|+.. +. ++|.+...= |-.+..- .+.+...+++.++..-.-.. .
T Consensus 213 ~vIIVDDiI-~TGgTi~~aa~~L~~~---GA-~~V~~~~TH---glfs~~A----~~rl~~s~i~~ivvTnTip~--~-- 276 (309)
T PRK04117 213 DVILVDDMI-DTAGTIVKAAEALKEK---GA-TSVMACCTH---AVLSGPA----YERIAKGALDELVVTNTIPL--K-- 276 (309)
T ss_pred EEEEECCHH-HHHHHHHHHHHHHHHC---CC-CEEEEEEEC---CCCCCHH----HHHHHHCCCCEEEECCCCCC--C--
T ss_conf 689757256-5279999999999866---99-748999945---5458369----99998389978998289877--4--
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 1137979997898999999998447898
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD 445 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~gd 445 (472)
+...++... +...++..+...+..|.
T Consensus 277 -~~~~kl~~i-sVa~llAeaI~ri~~~~ 302 (309)
T PRK04117 277 -EELPKIKVL-SVAPLFAEVIRRVYHNE 302 (309)
T ss_pred -CCCCCEEEE-EHHHHHHHHHHHHHCCC
T ss_conf -459980998-83999999999986799
No 256
>PRK00023 cmk cytidylate kinase; Provisional
Probab=50.08 E-value=10 Score=17.33 Aligned_cols=28 Identities=39% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303--654201233467777520
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+.+||+|-|. .||||+..+++.-|.-.+
T Consensus 3 ~~iIIaIDGpagSGKST~ak~lA~~L~~~y 32 (225)
T PRK00023 3 KAPVIAIDGPAGSGKGTVAKILAKKLGFHY 32 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 897899658986787899999999939887
No 257
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=50.06 E-value=17 Score=15.88 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 3113310002565321012577787411102687138851235417105899999999998649989999880
Q gi|254781101|r 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 (472)
Q Consensus 337 ~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~ 409 (472)
..+.++||=- ++...|-.|-+.|++. +-+++.+...- |-.+.. ..+.+....++.|+..-.
T Consensus 215 k~~iiVDDiI-dTgGTi~~Aa~~Lk~~----GAk~V~a~~tH---~vfs~~----a~~~l~~~~i~~vivTnT 275 (314)
T COG0462 215 KDVVIVDDII-DTGGTIAKAAKALKER----GAKKVYAAATH---GVFSGA----ALERLEASAIDEVIVTDT 275 (314)
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHC----CCCEEEEEEEC---HHHCHH----HHHHHHCCCCCEEEEECC
T ss_conf 8799993651-3656899999999977----99759999983---660708----999986488767998278
No 258
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=50.02 E-value=12 Score=16.95 Aligned_cols=28 Identities=32% Similarity=0.279 Sum_probs=16.9
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9998303-654201233467777520112
Q gi|254781101|r 110 IIAITGS-VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 110 vI~ITGT-nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+||=|.| .||||++--|...|++.|..+
T Consensus 5 lIAa~~SgsGKTtvt~gL~~aL~~rG~~V 33 (432)
T PRK13896 5 VLAGTSSGVGKTVATLAVLQALADAGYDV 33 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99778999989999999999999784963
No 259
>PRK01999 consensus
Probab=49.70 E-value=17 Score=15.84 Aligned_cols=89 Identities=10% Similarity=0.189 Sum_probs=39.6
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||== .+-.+|..+.+.|+.. +. ++|.+...= |-.+..- .+.+...+++.++..-.-.. .
T Consensus 214 ~~IIVDDiI-dTGgTl~~aa~~L~~~---GA-~~V~~~~TH---glfs~~A----~~rl~~s~i~~iv~TdTip~--~-- 277 (311)
T PRK01999 214 NVILVDDMV-DTAGTITKAADLMMEK---GA-KSVRAIASH---AVMSGPA----SERVENSKLTEMIFTDSIPY--R-- 277 (311)
T ss_pred EEEEECCHH-HHHHHHHHHHHHHHHC---CC-CEEEEEEEC---CCCCCHH----HHHHHHCCCCEEEECCCCCC--C--
T ss_conf 699975444-4347899999999855---99-738999945---5458559----99997489988998378558--5--
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
+...++...+ ...++..+...+..|
T Consensus 278 -~~~~k~~vis-va~llAeaI~ri~~~ 302 (311)
T PRK01999 278 -KKCSKVKVLS-VADLFAEAIKRVMNN 302 (311)
T ss_pred -CCCCCCEEEE-HHHHHHHHHHHHHCC
T ss_conf -5699848987-689999999998679
No 260
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=49.51 E-value=13 Score=16.62 Aligned_cols=30 Identities=37% Similarity=0.481 Sum_probs=24.6
Q ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHHHCC
Q ss_conf 9939998303---65420123346777752011
Q gi|254781101|r 107 KATIIAITGS---VGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 107 ~~~vI~ITGT---nGKTTt~~~l~~iL~~~~~~ 136 (472)
...+|+||.+ .|||||+..|+..|.+.|+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~r 88 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKR 88 (265)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 661899975899875689999999999963993
No 261
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950 This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=49.44 E-value=17 Score=15.81 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf 77787411102687138851235417105899999999998649989999880389899851137979997898999999
Q gi|254781101|r 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 (472)
Q Consensus 357 l~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~ 436 (472)
.++|..++. .|.+++++.+ |... ....+|...=...-||.|++.++.. ..+++..+ +..|++.
T Consensus 119 ~~~L~~LR~--~Gy~Lg~iT~----G~~~-~Q~eKl~~lg~~~fFD~V~~s~e~g-----~~KPhP~I-----F~~Al~~ 181 (244)
T TIGR02253 119 VDTLMELRE--SGYRLGLITD----GLTV-KQWEKLERLGIRDFFDAVITSEELG-----VEKPHPKI-----FYAALRR 181 (244)
T ss_pred HHHHHHHHH--CCCEEEEEEC----CCHH-HHHHHHHHHCCCCCCCEEEECCCCC-----CCCCCHHH-----HHHHHHH
T ss_conf 899999986--4778899866----8778-9999999827753577057224447-----76978589-----9999997
Q ss_pred HHHHCCCCCEEEE
Q ss_conf 9984478989999
Q gi|254781101|r 437 IQSSLVDGDVVVV 449 (472)
Q Consensus 437 l~~~~~~gdiVLi 449 (472)
+ .++|+|.|+|
T Consensus 182 ~--gV~p~eaVmV 192 (244)
T TIGR02253 182 L--GVKPEEAVMV 192 (244)
T ss_pred H--CCCCCCEEEE
T ss_conf 0--8893666676
No 262
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=49.39 E-value=9.5 Score=17.56 Aligned_cols=24 Identities=46% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 9998303--65420123346777752
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
+|.|.|- .||||++.+|+.-|+-.
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~ 27 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 78873589686478999999863983
No 263
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=49.38 E-value=17 Score=15.81 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEE-ECCCC
Q ss_conf 89999999999983069939998-30365
Q gi|254781101|r 91 VLGALNKLAVAARLRSKATIIAI-TGSVG 118 (472)
Q Consensus 91 ~~~al~~la~~~~~~~~~~vI~I-TGTnG 118 (472)
..++|.++=..+.+..++-+||| +|+=|
T Consensus 76 AieTL~e~l~~f~~s~~plIvaINlG~L~ 104 (504)
T TIGR03238 76 AMETLDEIFDGFNQSNKPLIVGINMGMLH 104 (504)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEHHHHH
T ss_conf 99999999998545699779998455443
No 264
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=49.15 E-value=8.8 Score=17.79 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 998999999999998306993999830365420123346777752011222122
Q gi|254781101|r 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 (472)
Q Consensus 89 ~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn 142 (472)
+.+.....+.-+|.-.-++...+|=||| ||||.+--+|.-+.. +|..--|+
T Consensus 5 ~~v~~v~~R~l~yL~~G~PvHl~GPaG~-GKT~LA~hvA~~r~R--PV~l~~Gd 55 (265)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGT-GKTTLAMHVARKRDR--PVVLINGD 55 (265)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHHHHHCCC--CEEEEECC
T ss_conf 2379999987663227886674478885-568999999973689--68998658
No 265
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=49.13 E-value=14 Score=16.55 Aligned_cols=27 Identities=37% Similarity=0.363 Sum_probs=20.9
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 39998303--6542012334677775201
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
++|=+||- .||||++.-++-.+...|+
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G~ 30 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSEQGK 30 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 19999579857489999999999995899
No 266
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=49.10 E-value=8.6 Score=17.86 Aligned_cols=32 Identities=38% Similarity=0.357 Sum_probs=23.3
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9998303--6542012334677775201122212
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIKKTYACIG 141 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~~~~~t~g 141 (472)
|++|+|- .||||.-+-+...|+..|-++.+.+
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IK 34 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATIK 34 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9378962588678999999999970799508986
No 267
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=49.01 E-value=16 Score=16.12 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=20.4
Q ss_pred CCEEEEECC---CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 939998303---654201233467777520112
Q gi|254781101|r 108 ATIIAITGS---VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 108 ~~vI~ITGT---nGKTTt~~~l~~iL~~~~~~~ 137 (472)
.|-|=|.|| .||||.+.-|..+|++.|..+
T Consensus 3 ~p~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~V 35 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRV 35 (451)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 887999868999978999999999999687945
No 268
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=48.96 E-value=14 Score=16.53 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=17.4
Q ss_pred EEEEECCC--CCCHHHHHHHHHHHHHHC
Q ss_conf 99983036--542012334677775201
Q gi|254781101|r 110 IIAITGSV--GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGTn--GKTTt~~~l~~iL~~~~~ 135 (472)
||.+.|-+ |||||..=+++-+...++
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~ 29 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGK 29 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999899999889999999999997699
No 269
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=48.96 E-value=18 Score=15.77 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCCCCCEEEEEEEECCC-------CCCCCEEEE
Q ss_conf 26887147467740222-------378988897
Q gi|254781101|r 20 GIVPQGFVNGISIDSRS-------IAPQEAFFA 45 (472)
Q Consensus 20 ~~~~~~~i~~i~~dSr~-------v~~g~lFva 45 (472)
+..|...+=+ |.|||- ..|||+||.
T Consensus 23 gQ~P~a~vi~-CsDSRV~pe~if~~~~GdlFVv 54 (190)
T cd00884 23 GQSPKALFIA-CSDSRVVPALITQTQPGELFVV 54 (190)
T ss_pred CCCCCEEEEE-EECCCCCHHHHHCCCCCCEEEE
T ss_conf 8999679998-6535899999828999767998
No 270
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=48.90 E-value=8.5 Score=17.87 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++-++||.|.| ||||+-.++.-++..
T Consensus 46 ~~GeivgilG~NGaGKSTLl~~i~Gl~~p 74 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 38989999979998199999999758777
No 271
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=48.85 E-value=18 Score=15.76 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 699399983036--5420123346777752011222122
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSIKKTYACIGS 142 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~~~~t~gn 142 (472)
.++.|.||-|=| ||+| |+.+|.....+--|.|+
T Consensus 24 ~~GE~HAiMGPNGsGKST----L~~~iaGhp~y~vt~G~ 58 (248)
T TIGR01978 24 KKGEIHAIMGPNGSGKST----LSKTIAGHPKYEVTSGT 58 (248)
T ss_pred CCCEEEEEECCCCCCHHH----HHHHHHCCCCEEEEEEE
T ss_conf 685179986889984788----87776179933784208
No 272
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=48.54 E-value=17 Score=15.82 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCHHH
Q ss_conf 9899999999999830-699399983036542012
Q gi|254781101|r 90 DVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 (472)
Q Consensus 90 d~~~al~~la~~~~~~-~~~~vI~ITGTnGKTTt~ 123 (472)
|--+|..+|.....+. ....+.||||| |||=|-
T Consensus 17 DQP~AI~~L~~gi~~g~~~Q~LlGvTGS-GKTfTm 50 (657)
T PRK05298 17 DQPQAIAELVEGIESGEKHQTLLGVTGS-GKTFTM 50 (657)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHH
T ss_conf 8799999999899749963699703678-566899
No 273
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=48.10 E-value=8.9 Score=17.74 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||.-.++.-+++.
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p 52 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 69989999889999899999999568577
No 274
>PRK04607 consensus
Probab=48.04 E-value=18 Score=15.67 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=10.3
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 56532101257778741
Q gi|254781101|r 347 NANPASMKAAISVLSQI 363 (472)
Q Consensus 347 NAnP~S~~aal~~l~~~ 363 (472)
.|||.||.+|++.-.++
T Consensus 310 ~A~~~S~~~Ai~~A~~~ 326 (330)
T PRK04607 310 QADTGSFRTALTHAIEL 326 (330)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 89969999999999999
No 275
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=47.96 E-value=8.2 Score=17.97 Aligned_cols=28 Identities=39% Similarity=0.501 Sum_probs=21.8
Q ss_pred EEEE--CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9983--036542012334677775201122
Q gi|254781101|r 111 IAIT--GSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 111 I~IT--GTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
|||- |--|||||+.=++..|...|+.+-
T Consensus 3 iaiyGKGGIGKSTtsaNlsaaLA~~GkkVl 32 (271)
T CHL00072 3 IAVYGKGGIGKSTTSCNISIALARRGKKVL 32 (271)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 999789854485889999999998799799
No 276
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=47.87 E-value=9.2 Score=17.65 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
..+.++||.|.| ||||+-.++.-++.
T Consensus 25 ~~Gei~~iiG~nGaGKSTLlk~i~Gl~~ 52 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4997999988999989999999964677
No 277
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=47.87 E-value=8.8 Score=17.78 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=20.5
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 99399983036--542012334677775
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
++.++||.|-| ||||.-.+++-+++.
T Consensus 24 ~GEiv~liGpNGaGKSTLlk~l~Gll~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 7989999979997699999999778788
No 278
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=47.71 E-value=19 Score=15.64 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=9.3
Q ss_pred CCCEEEEEEECCCHHH
Q ss_conf 3220255531210123
Q gi|254781101|r 183 RPHIAVITTIAPAHLS 198 (472)
Q Consensus 183 ~P~iaiiTNI~~dHld 198 (472)
++|..|+|..-..|++
T Consensus 108 ~yDlviflG~~~yy~s 123 (170)
T COG1880 108 NYDLVIFLGSIYYYLS 123 (170)
T ss_pred CCCEEEEEECCHHHHH
T ss_conf 8456999702299999
No 279
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=47.70 E-value=12 Score=16.86 Aligned_cols=26 Identities=4% Similarity=0.250 Sum_probs=16.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 789899997713254899999999850
Q gi|254781101|r 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 442 ~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
.+.|-|+|--|+ +-.|++++++.+-|
T Consensus 476 ~A~DAi~IDTs~-lsieeVv~kI~~l~ 501 (512)
T PRK13477 476 KADDAIELITDG-LSIEEVVDKIIDLY 501 (512)
T ss_pred CCCCEEEEECCC-CCHHHHHHHHHHHH
T ss_conf 589848998999-99999999999999
No 280
>PRK04554 consensus
Probab=47.60 E-value=19 Score=15.63 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=43.2
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||=- .+..++..|.+.|+.. +. ++|.+...= |-.+..- .+.+...+++.+++.-.-... +.
T Consensus 217 ~~IIVDDiI-dTGgTl~~aa~~Lk~~---GA-~~V~~~aTH---glfs~~A----~~rl~~s~i~~ivvTnTIp~~--~~ 282 (327)
T PRK04554 217 TCLIVDDMI-DTANTLCKAAVALKER---GA-ERVLAYASH---AVFSGEA----VSRIASSEIDQVVVTDTIPLS--EA 282 (327)
T ss_pred EEEECCCCC-CCHHHHHHHHHHHHHC---CC-CEEEEEEEC---CCCCCHH----HHHHHHCCCCEEEEECCCCCC--HH
T ss_conf 367204321-3506799999999976---99-878999879---1606339----999971899789991897687--45
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
.+...++...+ ...++..+...+..|
T Consensus 283 ~~~~~Ki~vls-va~llAeaI~rih~~ 308 (327)
T PRK04554 283 AKNCDRIRQVT-IAGLLAETVRRISNE 308 (327)
T ss_pred HCCCCCEEEEE-HHHHHHHHHHHHHCC
T ss_conf 62589809988-899999999998679
No 281
>KOG3022 consensus
Probab=47.52 E-value=8.8 Score=17.77 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=22.2
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 399983---036542012334677775201
Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472)
.+|.|+ |-.|||||+.+++..|+..+.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~ 77 (300)
T KOG3022 48 HIILVLSGKGGVGKSTVTVNLALALASEGK 77 (300)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 589998678877616899999999861797
No 282
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=47.45 E-value=8.9 Score=17.76 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||+|.| ||||.-.++.-++..
T Consensus 34 ~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99989999999985899999999669999
No 283
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.36 E-value=19 Score=15.61 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=28.7
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 31133100025653210125777874111026871388512354171058999999999986499-89999880
Q gi|254781101|r 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGF 409 (472)
Q Consensus 337 ~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~-d~v~~~G~ 409 (472)
..+.++||== .+-.++..|.+.|+. .+. ++|.+.-.= |-.+..- .+.+.+.++ +.|+..-.
T Consensus 231 r~~IIVDDiI-dTGgTl~~aa~~Lk~---~GA-~~V~a~aTH---gvfsg~A----~~rl~~s~ii~~vvvTdT 292 (331)
T PRK02812 231 KTAILVDDMI-DTGGTICEGARLLRK---EGA-KRVYACATH---AVFSPPA----IERLSASGLFEEVIVTNT 292 (331)
T ss_pred CEEEEECCHH-HHHHHHHHHHHHHHH---CCC-CEEEEEEEC---CCCCHHH----HHHHHHCCCCCEEEEECC
T ss_conf 5189962144-227999999999985---799-878999989---6558779----999972897677998089
No 284
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.05 E-value=9.4 Score=17.59 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||+..++.-++..
T Consensus 28 ~~GE~vaivG~nGsGKSTL~~~l~Gll~p 56 (276)
T PRK13650 28 KQGEWLSIIGHNGSGKSTTVRLIDGLLEA 56 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999998799999999738898
No 285
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=46.94 E-value=19 Score=15.56 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=50.6
Q ss_pred CHHHHHHHHCCEEECCCC--CCEEEEEEEECCCC-------CCCCEEEECCCCCCCHHHHHHHHHHCCC--EEEEECCCC
Q ss_conf 678899872799952688--71474677402223-------7898889716887476888999998698--899985521
Q gi|254781101|r 6 TFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSI-------APQEAFFAIKGPHYDGHDFILHAVQKGA--GLVVVNTDM 74 (472)
Q Consensus 6 ~~~~l~~~~~g~~~~~~~--~~~i~~i~~dSr~v-------~~g~lFval~g~~~DGh~~i~~A~~~Ga--~~~i~~~~~ 74 (472)
++.|+++.++|+++++.. +..+.++.+-.+.+ ++|.|-| .+|.|.|=-.=.-.|..+|. ++++..-..
T Consensus 219 rV~DIa~~L~A~vL~g~e~ldR~V~~vvV~Am~v~N~L~~L~~GsLVI-TPGDRsDIil~~~~a~~~~~~~agi~ltgg~ 297 (702)
T PRK05632 219 RVIDIAKHLGATVINGGDLLTRRVRSVTVCARSIPNMLEHLKPGSLVV-TPGDRSDVILAACLAAMNGVPIAGLLLTGGY 297 (702)
T ss_pred CHHHHHHHHCCEEECCCCHHCCEEEEEEEEEEECHHHHHCCCCCCEEE-CCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 299999983989965752102465049999700555561068995798-1685789999999984169980599961898
Q ss_pred CC---------CCCCCCCCEEEEC-CHHHHHHHHHHH
Q ss_conf 24---------5544697289959-989999999999
Q gi|254781101|r 75 VA---------SIGSLSIPVFGVD-DVLGALNKLAVA 101 (472)
Q Consensus 75 ~~---------~~~~~~~~~i~v~-d~~~al~~la~~ 101 (472)
.+ ......+|++.|+ |+.+....++..
T Consensus 298 ~~~~~i~~l~~~~~~~~lpil~~~~~t~~ta~~l~~~ 334 (702)
T PRK05632 298 EPDPRIAKLCEGAFETGLPILSVDTNTYQTALRLQSF 334 (702)
T ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHC
T ss_conf 9878999999864238988799568769999999745
No 286
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=46.78 E-value=2.5 Score=21.45 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=43.1
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHH--HHHHHHH----HHHHC--CCCC
Q ss_conf 78988897168874768889999986988999855212455446972899599899--9999999----99830--6993
Q gi|254781101|r 38 APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG--ALNKLAV----AARLR--SKAT 109 (472)
Q Consensus 38 ~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~--al~~la~----~~~~~--~~~~ 109 (472)
+.|..=|.+... +|-.+|.+.+=-||..++-..|.. .+.++-..+-++ ...+.+. .|+-. -+++
T Consensus 30 rtg~~~I~i~~~--~gkpvIsE~lCiGCGICvkkCPF~------AI~IvnLP~eLe~e~vHRYg~NgFkL~~LP~pr~G~ 101 (591)
T COG1245 30 RTGKETIEIDED--TGKPVISEELCIGCGICVKKCPFD------AISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGK 101 (591)
T ss_pred CCCCEEEEECCC--CCCCEEEHHHHCCCHHHHCCCCCC------EEEEECCCHHHCCCCEEECCCCCEEEECCCCCCCCC
T ss_conf 578726995477--798436764423203431348866------178843834643443044057743784578788884
Q ss_pred EEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 99983036--54201233467777
Q gi|254781101|r 110 IIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 110 vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
|+||-|+| ||||+...|+--|.
T Consensus 102 V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 102 VVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799876897657889999747607
No 287
>PRK06942 glutamate-1-semialdehyde 2,1-aminomutase; Validated
Probab=46.72 E-value=9.1 Score=17.68 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=30.8
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 002565321012577787411102687138851235417105899999999998649989
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~ 403 (472)
-+||.||.||.+++.+|+.+.... ++..+.++| +.+-..+-+.+.+.++..
T Consensus 296 gTf~gnp~a~AAalatL~~~~~~~------~~~~~~~~g---~~L~~gl~~~~~~~g~~~ 346 (425)
T PRK06942 296 GTLSGNPIAVAAGLKTLRLIQAPG------FYDALAAQT---RRLADGLAAEARAAGVPF 346 (425)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCC------HHHHHHHHH---HHHHHHHHHHHHHCCCCE
T ss_conf 899878799999999999984567------999999999---999999999999779988
No 288
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.50 E-value=11 Score=17.27 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=19.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.+++|+|.| ||||+-.++.-++.
T Consensus 23 ~~Ge~~~i~G~nGaGKSTLl~~l~gl~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7997999987889998999999958847
No 289
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=45.99 E-value=11 Score=17.04 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH-HHCCC
Q ss_conf 699399983036--542012334677775-20112
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS-IKKTY 137 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~-~~~~~ 137 (472)
..+.+.|.-|-| |||||-.|+-.+|+. .|...
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~ 60 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60 (300)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCEEE
T ss_conf 48717876658889732339998645786676689
No 290
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=45.83 E-value=9.6 Score=17.53 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=31.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 31000256532101257778741110268713885123541710589999999999864998
Q gi|254781101|r 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472)
Q Consensus 341 iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472)
+.--+||.||.||.+++.+|..+.... +...+.++|++ +-..+-+.+.+.++.
T Consensus 297 ~~~gTf~gnpla~AAa~AtL~~l~~~~------~~~~~~~~g~~---l~~gl~~~~~~~g~~ 349 (433)
T PRK00615 297 FQAGTLSGNPLAMAAGKASIELCREEG------FYTQLSNLEQL---FLSPIEEMIRSQGFP 349 (433)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCC------HHHHHHHHHHH---HHHHHHHHHHHCCCC
T ss_conf 546887406999999999999983578------99999999999---999999999976998
No 291
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=45.71 E-value=10 Score=17.41 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+.|-| ||||+-.++.-++..
T Consensus 36 ~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p 64 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999989988899999999658988
No 292
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=45.58 E-value=9.7 Score=17.49 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=15.4
Q ss_pred CCCEEEEECCCCCCHHHH-HHHHHHH
Q ss_conf 993999830365420123-3467777
Q gi|254781101|r 107 KATIIAITGSVGKTTTKE-MLTIALS 131 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~-~l~~iL~ 131 (472)
+.-|+|.||| |||.|.. ++..+++
T Consensus 25 H~aIlg~TGs-GKS~tv~vLl~~l~~ 49 (218)
T pfam01935 25 HFAILGSTGS-GKSNTVAVLLEELLE 49 (218)
T ss_pred HEEEECCCCC-CHHHHHHHHHHHHHH
T ss_conf 1478726999-769999999999985
No 293
>PRK13544 consensus
Probab=45.57 E-value=11 Score=17.27 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+.|.| ||||.-.+++-++..
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p 53 (208)
T PRK13544 25 KQNSLTLVIGNNGSGKTSLLRLLAGLIPI 53 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 29949999999999899999999588068
No 294
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family; InterPro: IPR014228 Members of this entry include YlxY, and are related to IPR014132 from INTERPRO, which represents a subset of the polysaccharide deacetylase family found in a species if, and only if, the species forms endospores e.g. Bacillus subtilis or Clostridium tetani. Proteins in this entry are likewise restricted to spore-formers, but are not universally found among endospore-forming species..
Probab=45.49 E-value=20 Score=15.42 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE--ECCCHHHHHHHHHHHHHH
Q ss_conf 8989999999984478989999--771325489999999985
Q gi|254781101|r 428 ETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEE 467 (472)
Q Consensus 428 ~~~e~a~~~l~~~~~~gdiVLi--KGSr~~~le~iv~~L~~~ 467 (472)
++.+..++.+.+-++||.+||- ..|-..+||.++..|++|
T Consensus 216 P~p~vl~~Rvl~KiHpGA~vLMHPT~Ssa~gLe~lIt~ikek 257 (269)
T TIGR02873 216 PEPSVLVDRVLSKIHPGAMVLMHPTESSAEGLEELITKIKEK 257 (269)
T ss_pred CCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 874689888774068986576489976689999998999762
No 295
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=45.49 E-value=16 Score=16.02 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=15.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHH
Q ss_conf 99399983036--5420123346
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLT 127 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~ 127 (472)
+..++.|||.| ||||.-..++
T Consensus 20 ~g~~~iItGpN~sGKSt~Lr~i~ 42 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98689998998775799999999
No 296
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.37 E-value=10 Score=17.37 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|.| ||||.-.++.-++.
T Consensus 25 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7998999999999859999999976888
No 297
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=45.17 E-value=12 Score=16.91 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCCEEEEECC--CCCCHHHHHHHHHHHH-HHCCCCC
Q ss_conf 69939998303--6542012334677775-2011222
Q gi|254781101|r 106 SKATIIAITGS--VGKTTTKEMLTIALSS-IKKTYAC 139 (472)
Q Consensus 106 ~~~~vI~ITGT--nGKTTt~~~l~~iL~~-~~~~~~t 139 (472)
.|.|+-=|||= .|||| |++|+|+- .|+..+-
T Consensus 2 ~KiPvTvvTGFLGaGKTT---LiRhlL~NA~GkRiAv 35 (349)
T TIGR02475 2 AKIPVTVVTGFLGAGKTT---LIRHLLENAEGKRIAV 35 (349)
T ss_pred CCCCEEEEECCCCCCHHH---HHHHHHHCCCCCEEEE
T ss_conf 732327873756761589---9999971747876999
No 298
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=45.17 E-value=12 Score=16.92 Aligned_cols=21 Identities=52% Similarity=0.664 Sum_probs=17.6
Q ss_pred EEEEECC--CCCCHHHHHHHHHH
Q ss_conf 9998303--65420123346777
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL 130 (472)
+|+|+|. .||||+..-+++.|
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 299
>PRK10824 hypothetical protein; Provisional
Probab=45.13 E-value=19 Score=15.57 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=5.9
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 03455431147664
Q gi|254781101|r 311 DTAIKALSVFHPKE 324 (472)
Q Consensus 311 ~~i~~~L~~~~~~~ 324 (472)
++++++|+.|..+|
T Consensus 56 ~~ir~~lk~~s~WP 69 (115)
T PRK10824 56 PDIRAELPKYANWP 69 (115)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 88999989981997
No 300
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=45.08 E-value=11 Score=17.16 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++..+||+|.+ ||||...++.-++.
T Consensus 26 ~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5999999999999809999999966666
No 301
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=45.00 E-value=16 Score=16.06 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 993999830--36542012334677775201122
Q gi|254781101|r 107 KATIIAITG--SVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 107 ~~~vI~ITG--TnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
+.+-|||=| --||+||+.-++..|...|+.+-
T Consensus 3 ~mr~IAiYGKGGIGKSTtssNlsAAlA~~G~rVl 36 (293)
T PRK13234 3 ALRQIAFYGKGGIGKSTTSQNTLAALVEMGQKIL 36 (293)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 7757999779844587789999999997799699
No 302
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.98 E-value=12 Score=16.91 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+-|-| ||||+-.++.-++..
T Consensus 24 ~~Gei~gllG~NGaGKTTll~~i~Gl~~p 52 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79959999989998499999999600266
No 303
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=44.98 E-value=12 Score=16.79 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=19.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++..+||.|.| ||||.-.++..++.
T Consensus 26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 6999999999998759999999986176
No 304
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=44.83 E-value=10 Score=17.34 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 99399983036--542012334677775
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
++.++||.|.| ||||.-.+|+-++..
T Consensus 25 ~GEi~gLiGpNGaGKSTLlk~i~Gll~P 52 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9809999899997099999999679868
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=44.66 E-value=11 Score=17.19 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+-|.| ||||+-.+++-++..
T Consensus 48 ~~GEivgllG~NGaGKSTLlk~I~Gl~~P 76 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59989999989986199999999679888
No 306
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.63 E-value=11 Score=17.13 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=20.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|-| ||||+-.++.-++.
T Consensus 29 ~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~ 56 (273)
T PRK13647 29 PEGSKTAILGPNGAGKSTLLLHLNGIYT 56 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998999999999759999999966988
No 307
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=44.58 E-value=21 Score=15.33 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=17.2
Q ss_pred CCCCCCEEEEEEEECCC-------CCCCCEEEEC
Q ss_conf 26887147467740222-------3789888971
Q gi|254781101|r 20 GIVPQGFVNGISIDSRS-------IAPQEAFFAI 46 (472)
Q Consensus 20 ~~~~~~~i~~i~~dSr~-------v~~g~lFval 46 (472)
+..|...+=+ |.|||- ..|||+|+.-
T Consensus 22 gQ~P~a~vi~-CsDSRv~pe~ifd~~~GdlFvvR 54 (182)
T cd00883 22 GQTPEYLWIG-CSDSRVPENTILGLLPGEVFVHR 54 (182)
T ss_pred CCCCCEEEEE-ECCCCCCHHHHCCCCCCCEEEEE
T ss_conf 8999669998-64789899998099997679997
No 308
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=44.57 E-value=21 Score=15.33 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=10.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 65321012577787411
Q gi|254781101|r 348 ANPASMKAAISVLSQIS 364 (472)
Q Consensus 348 AnP~S~~aal~~l~~~~ 364 (472)
|||.||.+|++.-..+.
T Consensus 313 A~~~s~~~Ai~~A~~~a 329 (334)
T PRK00232 313 ADVGSFITALNLAIRMA 329 (334)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 99699999999999999
No 309
>KOG3220 consensus
Probab=44.51 E-value=14 Score=16.45 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=15.7
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 39998303--654201233467777520
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
.+||+||+ .||||+ .+.|++.|
T Consensus 2 ~iVGLTGgiatGKStV----s~~f~~~G 25 (225)
T KOG3220 2 LIVGLTGGIATGKSTV----SQVFKALG 25 (225)
T ss_pred EEEEEECCCCCCHHHH----HHHHHHCC
T ss_conf 6999405656673799----99999749
No 310
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.48 E-value=11 Score=17.15 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+.|-| ||||+-.++.-++..
T Consensus 28 ~~Ge~~aliG~NGaGKSTLl~~i~Gll~p 56 (277)
T PRK13652 28 GRKQRIAVIGPNGAGKSTLFKHFNGILKP 56 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999994799999999669999
No 311
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=44.23 E-value=16 Score=16.10 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHHHC
Q ss_conf 9939998303---6542012334677775201
Q gi|254781101|r 107 KATIIAITGS---VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~ITGT---nGKTTt~~~l~~iL~~~~~ 135 (472)
..|+++||=. -|||||..=+|.-+.+.|.
T Consensus 18 e~K~l~itS~~~~eGKsT~S~NiA~~fAqaGy 49 (207)
T TIGR01007 18 EIKVLLITSVKAGEGKSTTSANIAVSFAQAGY 49 (207)
T ss_pred CEEEEEEEECCCCCCCEEEEHHHHHHHHHCCC
T ss_conf 70589984110588862410788999985685
No 312
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=43.91 E-value=12 Score=16.88 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++..+||.|.+ ||||...++..++.
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 2999999999999849999999964546
No 313
>KOG3354 consensus
Probab=43.77 E-value=11 Score=17.13 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998303654201233467777520
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~~iL~~~~ 134 (472)
|+||.|| ||||..-++.+-|+-.+
T Consensus 17 vmGvsGs-GKSTigk~L~~~l~~~F 40 (191)
T KOG3354 17 VMGVSGS-GKSTIGKALSEELGLKF 40 (191)
T ss_pred EEECCCC-CHHHHHHHHHHHHCCCC
T ss_conf 9835887-74459999999858862
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=43.77 E-value=11 Score=17.08 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=19.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++-++||.|-| ||||+-.|++-++..
T Consensus 23 ~~GEiv~ilGpNGaGKSTllk~i~G~l~p 51 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89989999899999999999999688678
No 315
>KOG1324 consensus
Probab=43.75 E-value=21 Score=15.25 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=36.8
Q ss_pred HCCCCCCCCCCCCEECCCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHH
Q ss_conf 114766443310100036531133100-0256532101257778741110268713885123541710589999999999
Q gi|254781101|r 318 SVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 (472)
Q Consensus 318 ~~~~~~~GR~~~~~~~~~~~~~~iIDD-sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~ 396 (472)
.++.|++||+...=.......+ ..++ .| --.|+.+||+.|..-+....--+|.|+|+ .. .+++ .+
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~-~~t~~~~--~~~slesAl~lL~~pp~~~~ve~vfvIGG-----~~---vy~~---al 126 (190)
T KOG1324 61 EKFRPLPGRINVVLSRSLKEDF-APTENVF--LSSSLESALDLLEEPPSSNSVEMVFVIGG-----SE---VYSE---AL 126 (190)
T ss_pred CCCCCCCCCEEEEEECCCCCCC-CCCCCEE--EECCHHHHHHHHCCCCCCCCEEEEEEECC-----HH---HHHH---HH
T ss_conf 3458899855799944667566-7756789--83139999985138853352147999868-----89---9999---87
Q ss_pred HHCCCCEEEEE
Q ss_conf 86499899998
Q gi|254781101|r 397 SLYNISHVWLS 407 (472)
Q Consensus 397 ~~~~~d~v~~~ 407 (472)
....+|.+++.
T Consensus 127 ~~p~~~~i~~T 137 (190)
T KOG1324 127 NSPRCDAIHIT 137 (190)
T ss_pred CCCCCCEEEEE
T ss_conf 38775528988
No 316
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.71 E-value=12 Score=16.86 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||...++.-++..
T Consensus 26 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 54 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 48999999999998099999999706858
No 317
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=43.55 E-value=17 Score=15.89 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 9998303--6542012334677775201
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
.|+|-|- .||||...+|+.-|...|.
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g~ 29 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGY 29 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8999899899999999999999997799
No 318
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=43.47 E-value=11 Score=17.09 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||+-.++.-++..
T Consensus 32 ~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p 60 (269)
T PRK11831 32 PRGKITAIMGPSGIGKTTLLRLIGGQIAP 60 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999939997599999999679888
No 319
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.36 E-value=16 Score=16.10 Aligned_cols=26 Identities=38% Similarity=0.309 Sum_probs=21.3
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 39998303--654201233467777520
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
--|+|||. .||||...-++..|+..|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5999867998458999999999998559
No 320
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=43.20 E-value=13 Score=16.56 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=16.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHH
Q ss_conf 699399983036--5420123346
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLT 127 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~ 127 (472)
+...+++|.|-| ||||.-.++.
T Consensus 20 f~~~itaivG~NGaGKSTLl~~i~ 43 (204)
T cd03240 20 FFSPLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EECCEEEEECCCCCCHHHHHHHHH
T ss_conf 508889999899999999999986
No 321
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=43.13 E-value=22 Score=15.18 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||== .+-.++..|.+.|++ . +-++|.+...= |-.+..--+.+.+...+..+|.|+..-.-... .
T Consensus 228 ~vIIVDDiI-dTGgTl~~aa~~Lk~---~-GA~~V~a~aTH---gvfsg~A~eri~~~~~~~~i~~vvvTnTip~~---~ 296 (340)
T PRK00553 228 NCLIVDDMI-DTGGTVIAAAKLLKK---Q-KAKKVCVMATH---GLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQT---K 296 (340)
T ss_pred EEEEECCHH-HHHHHHHHHHHHHHH---C-CCCEEEEEEEC---CCCCHHHHHHHHHCCCCCCCCEEEECCCCCCH---H
T ss_conf 489525244-312569999999998---7-99879999979---51485799999852025776589985788772---5
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 1137979997898999999998447898999977132548999999998
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472)
.....++... +...++..+...+..|. |=+.=|.+..+-.+|
T Consensus 297 ~~~~~kl~vl-sva~llaeaI~ri~~~~------SvS~LF~~~~~~~~~ 338 (340)
T PRK00553 297 FEKKPQFKVV-DLAHLYEEVLLCYANGG------SISAIYTRHIEWIKK 338 (340)
T ss_pred HHCCCCCEEE-EHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHH
T ss_conf 6559982998-77999999999986799------689987740998862
No 322
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=43.06 E-value=22 Score=15.18 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHHHHCC--CCCEEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 99999998306--9939998303--65420123346777752
Q gi|254781101|r 96 NKLAVAARLRS--KATIIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 96 ~~la~~~~~~~--~~~vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
..||....... .+-+|||.|. .||||.-.|+.+-|++.
T Consensus 6 ~~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~~~ 47 (301)
T pfam07693 6 ENLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEF 47 (301)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999957778999799998989999999999999998613
No 323
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.02 E-value=12 Score=16.95 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||+..++.-++..
T Consensus 31 ~~GE~v~iiG~nGsGKSTLl~~l~GLl~p 59 (287)
T PRK13637 31 EDGEFVALIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999993999999999739988
No 324
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.91 E-value=13 Score=16.76 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||...++.-++..
T Consensus 34 ~~Ge~vaivG~nGsGKSTLlk~l~Gll~p 62 (273)
T PRK13632 34 NEGEYVAILGHNGSGKSTISKILTGLLKP 62 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 49989999999998699999999738778
No 325
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=42.90 E-value=12 Score=16.90 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|.| ||||+-.++.-++.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6998999999999869999999972898
No 326
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=42.82 E-value=18 Score=15.78 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=9.9
Q ss_pred CCCEEEEECCCCCCHH
Q ss_conf 9939998303654201
Q gi|254781101|r 107 KATIIAITGSVGKTTT 122 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt 122 (472)
+.+++-|.+--||+|-
T Consensus 31 ~~~vvVVvSA~gg~Td 46 (239)
T cd04261 31 GNQVVVVVSAMGGTTD 46 (239)
T ss_pred CCCEEEEECCCCCCHH
T ss_conf 9928999779875368
No 327
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=42.73 E-value=11 Score=17.14 Aligned_cols=29 Identities=38% Similarity=0.360 Sum_probs=21.9
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399983---03654201233467777520112
Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
+||.+. |-.||||+.-.|+.-|...|..+
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V 33 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRV 33 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 37999617998659999999999999689959
No 328
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=42.58 E-value=12 Score=16.86 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=19.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++|+.|.| ||||+-.++.-++.
T Consensus 24 ~~Gei~~lvG~nGaGKSTl~~~i~Gl~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7998999998899899999999957768
No 329
>PRK02270 consensus
Probab=42.45 E-value=22 Score=15.12 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=41.4
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.++||== .+-.++..|.+.|+. .+. ++|.+.-.= |-.+.. ..+.+....++.|+..-.-. ..+.
T Consensus 216 ~~IIVDDiI-dTGgTl~~aa~~Lk~---~GA-~~V~~~aTH---gvfs~~----a~~~~~~s~i~~ivvTnTip--~~~~ 281 (327)
T PRK02270 216 NAVIIDDII-DTGGTIINAAEVLKE---KGA-KKIVLAATH---GLFSKG----FEIFEENPNIDKVIITNSID--NKEL 281 (327)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHH---CCC-CEEEEEEEC---HHCCCH----HHHHHHCCCCCEEEEECCCC--CCHH
T ss_conf 489976700-054779999999998---799-879999977---443804----99996589987899938866--8433
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
.+...++... +...++..+...+..|
T Consensus 282 ~~~~~kl~vl-sva~llaeaI~ri~~~ 307 (327)
T PRK02270 282 AKKFKKLLIV-SLAEFLSKVILACIFS 307 (327)
T ss_pred HHCCCCEEEE-EHHHHHHHHHHHHHCC
T ss_conf 5028982998-8799999999998679
No 330
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.42 E-value=13 Score=16.75 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|.+ ||||.-.++.-+++
T Consensus 26 ~~Ge~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5998999999999839999999976775
No 331
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=42.40 E-value=22 Score=15.11 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHCCCC--HHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 221035676510121--034554311476644331010003653113310002565321012577787411102687138
Q gi|254781101|r 296 MLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472)
Q Consensus 296 alaAia~~~~lGi~~--~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472)
++.-+|++...|+++ +++ +.++.-. | ....+. .+|-..+.|-|+| ..+.+.++.|..+- + +-...
T Consensus 279 vLHL~AIA~eaGi~l~l~df-d~is~~~--P---~l~~l~--P~G~~~~~d~~~a--GGvp~vmk~L~~lL-~--~d~~T 345 (577)
T PRK06131 279 VIHLIAIAGRAGVELDLDDW-DRIGRDV--P---VLVNLQ--PSGEYLMEDFYYA--GGLPAVLRELGELL-H--LDALT 345 (577)
T ss_pred HHHHHHHHHHHCCCCCHHHH-HHHHCCC--C---EEEEEC--CCCCCHHHHHHHC--CCHHHHHHHHHHHC-C--CCCCC
T ss_conf 88899999973899999999-9870678--7---787733--6764029888873--79999999999750-6--88875
Q ss_pred EECC-HHHCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCHHH---HH------HHCCCCCCEEEECCHHHHHHHHHH
Q ss_conf 8512-35417105899999999998----6499899998803898---99------851137979997898999999998
Q gi|254781101|r 374 VLGD-MCEMGELSQSFHIDLAEVLS----LYNISHVWLSGFHVLA---LK------DALPRSIHVHYSETMDGLFLFIQS 439 (472)
Q Consensus 374 VlG~-m~ELG~~~~~~h~~i~~~~~----~~~~d~v~~~G~~~~~---~~------~~~~~~~~~~~~~~~e~a~~~l~~ 439 (472)
|-|. +.|.=+..+..-+++++-+. ..+ -..++.|.-+.. ++ +...-..++..|++.|++.+.+..
T Consensus 346 VtG~tl~e~l~~~~~~~~~VIr~~~~P~~~~G-gl~iL~GNLAP~GaVvK~sav~~~~~~~~G~A~VF~~ee~~~~ai~~ 424 (577)
T PRK06131 346 VNGKTLGENLAGAEIYNDDVIRPLDNPLKPEG-GIAVLRGNLAPDGAVIKPSAASPELLKHEGRAVVFEDYEDYKARIDD 424 (577)
T ss_pred CCCCCHHHHHHCCCCCCCCEECCCCCCCCCCC-CEEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHC
T ss_conf 27986999970687789774666565656778-88982266578852675201473112787425775799999999848
Q ss_pred H---CCCCCEEEE-----ECCCHHH
Q ss_conf 4---478989999-----7713254
Q gi|254781101|r 440 S---LVDGDVVVV-----KSSNSCG 456 (472)
Q Consensus 440 ~---~~~gdiVLi-----KGSr~~~ 456 (472)
. .++||+|.+ ||..||.
T Consensus 425 ~~l~i~~gdVvViR~eGPkGgPGMp 449 (577)
T PRK06131 425 PDLDVDEDSVLVLRNAGPKGYPGMP 449 (577)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 7767877259999566898999873
No 332
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=42.27 E-value=13 Score=16.72 Aligned_cols=27 Identities=41% Similarity=0.470 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||...++.-+|..
T Consensus 31 ~~GE~v~IiG~nGsGKSTL~k~l~Gll~P 59 (304)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLP 59 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59989999879998599999999669998
No 333
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype; InterPro: IPR006412 Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/Escherichia coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by IPR006411 from INTERPRO from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This family represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis.
Probab=42.18 E-value=22 Score=15.09 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHCCCCHHHHHHHHC
Q ss_conf 76510121034554311
Q gi|254781101|r 303 VSILTADVDTAIKALSV 319 (472)
Q Consensus 303 ~~~lGi~~~~i~~~L~~ 319 (472)
-...|+|.++|.++++.
T Consensus 251 ~etyGvPveei~~Gi~~ 267 (347)
T TIGR01521 251 KETYGVPVEEIVKGIKY 267 (347)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 31247868998867762
No 334
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=41.94 E-value=13 Score=16.56 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||...++.-++..
T Consensus 35 ~~GE~v~iiG~nGsGKSTL~r~l~gl~~P 63 (281)
T PRK13633 35 KKGEFLVILGHNGSGKSTIAKHMNALLLP 63 (281)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999998499999999758878
No 335
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=41.92 E-value=16 Score=15.99 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=22.8
Q ss_pred CCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 311331000256-532101257778741110268713885
Q gi|254781101|r 337 GFFTLIDESYNA-NPASMKAAISVLSQISPHGEGRRIAVL 375 (472)
Q Consensus 337 ~~~~iIDDsYNA-nP~S~~aal~~l~~~~~~~~~r~i~Vl 375 (472)
..+.++|..-++ +|.+.+...+.++.++. .++-++++
T Consensus 164 P~lllLDEPtsgLD~~~~~~i~~~i~~l~~--~~~tviiv 201 (248)
T PRK09580 164 PELCILDESDSGLDIDALKIVADGVNSLRD--GKRSFIIV 201 (248)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE
T ss_conf 998999796223999999999999999983--89999999
No 336
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.85 E-value=13 Score=16.75 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH-HHHCC
Q ss_conf 699399983036--54201233467777-52011
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS-SIKKT 136 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~-~~~~~ 136 (472)
.++.++||.|-| ||||+..++.-++. ..|.+
T Consensus 26 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I 59 (275)
T PRK13639 26 EEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSV 59 (275)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 8998999999999649999999973989996399
No 337
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.71 E-value=13 Score=16.75 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.3
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 99399983036--542012334677775
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
++.+++|.|.| ||||.-.+++-++..
T Consensus 36 ~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p 63 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8989999999998799999999769778
No 338
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=41.71 E-value=23 Score=15.04 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=6.3
Q ss_pred HCCCCHHHHHHHHCC
Q ss_conf 101210345543114
Q gi|254781101|r 306 LTADVDTAIKALSVF 320 (472)
Q Consensus 306 lGi~~~~i~~~L~~~ 320 (472)
...+.++..+.|...
T Consensus 45 ~~~~~~~~l~ll~aH 59 (157)
T TIGR03164 45 RAASPEQQLALIRAH 59 (157)
T ss_pred HHCCHHHHHHHHHHC
T ss_conf 959999999999869
No 339
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=41.58 E-value=13 Score=16.63 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||+-.++.-++..
T Consensus 24 ~~Gei~gliG~nGaGKSTL~~~i~Gl~~p 52 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89989999989997399999999679878
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=41.40 E-value=12 Score=16.85 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=20.6
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 99399983036--542012334677775
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.+.|+|+-|.| ||||+--+|+-.|..
T Consensus 98 ~G~v~GLiG~NGaGKST~lkILsG~l~P 125 (590)
T PRK13409 98 EGKVTGILGPNGIGKSTAVKILSGELIP 125 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9878998899999899999999587148
No 341
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=41.36 E-value=12 Score=16.82 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9998303--654201233467777520
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+|+|-|. .||||+..+|+.-|.-.+
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~ 27 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPY 27 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 988868997898999999999909907
No 342
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=41.35 E-value=23 Score=15.01 Aligned_cols=15 Identities=20% Similarity=-0.093 Sum_probs=5.7
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 121013424689987
Q gi|254781101|r 222 TIFLNYDDSFFELLK 236 (472)
Q Consensus 222 ~~ViN~Dd~~~~~l~ 236 (472)
..|.|..-.....+.
T Consensus 205 i~IaNRT~erA~~La 219 (414)
T COG0373 205 ITIANRTLERAEELA 219 (414)
T ss_pred EEEECCCHHHHHHHH
T ss_conf 999758789999999
No 343
>PRK13974 thymidylate kinase; Provisional
Probab=41.23 E-value=21 Score=15.24 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303--654201233467777520
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
+++.|.+-|. .||||-..+|+.-|.+.|
T Consensus 2 ~G~fIv~EGiDGsGKsTq~~~L~~~L~~~g 31 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 941999889999989999999999998658
No 344
>CHL00181 cbbX CbbX; Provisional
Probab=41.21 E-value=23 Score=14.99 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.8
Q ss_pred EEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 998303--654201233467777520
Q gi|254781101|r 111 IAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 111 I~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
...+|- .||||++.+++.+|...|
T Consensus 62 ~vF~GnPGTGKTTVARl~a~il~~lG 87 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYRLG 87 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 88878998679999999999999869
No 345
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=41.00 E-value=13 Score=16.73 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHH
Q ss_conf 699399983036--5420123346777752
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSI 133 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~ 133 (472)
.++.++|+-|-| |||||-.|+.-++...
T Consensus 29 ~~Gei~gllGpNGAGKTTli~~l~Gl~~p~ 58 (304)
T PRK13537 29 QPGECFGLLGPNGAGKTTTLKMLLGLTHPD 58 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 699599999998972999999997795689
No 346
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=40.89 E-value=23 Score=15.03 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=18.9
Q ss_pred CCCEEEEECCC--CCCHHHHH--HHHHHHHHH
Q ss_conf 99399983036--54201233--467777520
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEM--LTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~--l~~iL~~~~ 134 (472)
..+++=|||.| ||||.--. +..+|.+.|
T Consensus 41 ~~~~~iiTGpN~sGKSt~Lk~igl~~~lAq~G 72 (234)
T pfam00488 41 RSRILLITGPNMGGKSTYLRQVALIVIMAQIG 72 (234)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 61699997887776199999999999999836
No 347
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.80 E-value=13 Score=16.57 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHH
Q ss_conf 699399983036--5420123346777752
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSI 133 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~ 133 (472)
.++.++||-|.| ||||+..++.-++...
T Consensus 50 ~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p~ 79 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK 79 (320)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 599899999499984999999997588899
No 348
>KOG3308 consensus
Probab=40.80 E-value=15 Score=16.23 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.0
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 939998303--6542012334677775
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
.-||||.|- .||||.+..+...|..
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~ 30 (225)
T KOG3308 4 TLIVGISGCTNSGKTTLAKSLHRFFPG 30 (225)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899986424678776899999987368
No 349
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=40.79 E-value=12 Score=16.80 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 99399983036--542012334677775
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
++.++|+.|-| ||||+-.|+..+++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~Gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8959999899999899999999679778
No 350
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.78 E-value=14 Score=16.45 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||...++.-++..
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p 59 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999998199999999707888
No 351
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.61 E-value=17 Score=15.95 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||...++.-+|..
T Consensus 32 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 60 (283)
T PRK13640 32 PRGSWTALIGHNGSGKSTISKLINGLLLP 60 (283)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89999999999998799999999640378
No 352
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=40.19 E-value=17 Score=15.89 Aligned_cols=30 Identities=40% Similarity=0.444 Sum_probs=22.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH-HHC
Q ss_conf 699399983036--542012334677775-201
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS-IKK 135 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~-~~~ 135 (472)
+++.++|.-|-| |||||--||.-++.. .|+
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~ 80 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80 (325)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCE
T ss_conf 898689887588886033398973860368875
No 353
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.01 E-value=15 Score=16.27 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||...++.-++..
T Consensus 35 ~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p 63 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999995799999999659889
No 354
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=39.88 E-value=24 Score=14.86 Aligned_cols=20 Identities=65% Similarity=0.757 Sum_probs=9.7
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 9998303--6542012334677775
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
+|=|||= .||||| |+..|+.
T Consensus 247 IiLVTGPTGSGKtTT---LYaaL~~ 268 (495)
T TIGR02533 247 IILVTGPTGSGKTTT---LYAALSR 268 (495)
T ss_pred EEEECCCCCCCHHHH---HHHHHHH
T ss_conf 188417789852588---9999986
No 355
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=39.88 E-value=14 Score=16.49 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||.-.++.-++..
T Consensus 23 ~~GE~v~iiG~nGaGKSTLl~~i~Gll~p 51 (233)
T PRK10771 23 ERGEQVAILGPSGAGKSTLLNLIAGFLTP 51 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999998199999999659999
No 356
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=39.87 E-value=14 Score=16.45 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=46.4
Q ss_pred HHCCCCC--CCC-C-CCCCCCCCCCC------EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH----CCCC
Q ss_conf 3015664--433-2-11212232322------0255531210123444578888654331037622101210----1342
Q gi|254781101|r 164 IFELGMS--HLG-E-IRFLTHLVRPH------IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL----NYDD 229 (472)
Q Consensus 164 V~E~g~~--~~g-e-i~~L~~i~~P~------iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~Vi----N~Dd 229 (472)
|+|+|+. +-| + |++...+++|+ +.=+|||+.|||+.=.+.|....+-.++++. .++|. |.|-
T Consensus 223 iIE~gA~k~~nGk~ii~~~~~FikP~~~l~~~~~elT~ITq~ml~n~~~~~~vL~k~~~f~~d----~ilVAHNGasFD~ 298 (1264)
T TIGR01405 223 IIEFGAVKVKNGKRIIDKFQFFIKPKEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFLKD----SILVAHNGASFDI 298 (1264)
T ss_pred EEEEEEEEEECCCEEEEEHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHHCC----EEEEECCCCCCCH
T ss_conf 467875887468576231232328875467542662466479737984178999999997697----5888627610366
Q ss_pred HHHHHHHHHCC
Q ss_conf 46899875201
Q gi|254781101|r 230 SFFELLKAKSH 240 (472)
Q Consensus 230 ~~~~~l~~~~~ 240 (472)
++++...++..
T Consensus 299 ~Fl~~~~~k~~ 309 (1264)
T TIGR01405 299 GFLNTNFEKVG 309 (1264)
T ss_pred HHHHHHHHHCC
T ss_conf 88988987627
No 357
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=39.78 E-value=21 Score=15.26 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 5432212222222233332210356765101210345543114
Q gi|254781101|r 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 (472)
Q Consensus 278 ~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~ 320 (472)
...+.+....+|+-| |+.++..+|++...|.++...+
T Consensus 463 ~ptY~l~~G~~g~S~------Af~ia~rlGl~~~iie~a~~~~ 499 (753)
T COG1193 463 RPTYRLLEGVPGRSN------AFDIALRLGLPEPIIEEAKTEF 499 (753)
T ss_pred HHHHHHHCCCCCCCH------HHHHHHHCCCCHHHHHHHHHHC
T ss_conf 677887607866102------7999998399889999987750
No 358
>PRK13542 consensus
Probab=39.65 E-value=14 Score=16.45 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||.-.++.-++..
T Consensus 42 ~~Gei~~liGpNGaGKTTLlk~l~Gll~p 70 (224)
T PRK13542 42 APGDLLQVMGPNGSGKTSLLRVLSGLMPP 70 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59979999999999999999999579788
No 359
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=39.46 E-value=25 Score=14.82 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=14.3
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 223789888971688747688899999869889998
Q gi|254781101|r 35 RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 (472)
Q Consensus 35 r~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~ 70 (472)
.+-+--.+=-|=-|.+.=|=-| .|-+-|.+|+||
T Consensus 63 ~E~~A~GVIaASAGNHAQGVAl--sa~~LG~~A~IV 96 (508)
T TIGR01124 63 AEQRARGVIAASAGNHAQGVAL--SAEKLGLKAVIV 96 (508)
T ss_pred HHHHCCCEEECCCCCHHHHHHH--HHHHCCCCEEEE
T ss_conf 7584182012024545789987--663179726987
No 360
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=39.41 E-value=11 Score=17.19 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHC
Q ss_conf 6542012334677775201
Q gi|254781101|r 117 VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 117 nGKTTt~~~l~~iL~~~~~ 135 (472)
.||||...+|+.-|+..|.
T Consensus 7 sGKsTq~~~L~~~L~~~g~ 25 (186)
T pfam02223 7 AGKTTQAELLKERLKEQGI 25 (186)
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999998799
No 361
>PRK04040 adenylate kinase; Provisional
Probab=39.33 E-value=19 Score=15.60 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 939998303--654201233467777520112
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~~~~ 137 (472)
+++|-|||- .||||+...+...|...++.+
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~v 33 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 41899975898878999999999723587598
No 362
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=39.30 E-value=22 Score=15.12 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=18.7
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHH
Q ss_conf 939998303--65420123346777
Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL 130 (472)
.+++.|||- .||||+.......|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5599997579887266999999877
No 363
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=39.22 E-value=14 Score=16.48 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=21.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||.-.+++-++..
T Consensus 33 ~~GE~v~iiG~sGsGKSTLl~~i~Gl~~p 61 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89989999999994099999999669999
No 364
>PRK10436 hypothetical protein; Provisional
Probab=39.10 E-value=25 Score=14.78 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 33332210356765101210345543114
Q gi|254781101|r 292 MAQNMLMTLGIVSILTADVDTAIKALSVF 320 (472)
Q Consensus 292 nv~NalaAia~~~~lGi~~~~i~~~L~~~ 320 (472)
+..++..|+.=...+|+++..+...|..+
T Consensus 317 Htnda~~ai~RL~~mgi~~~lla~~L~~V 345 (461)
T PRK10436 317 HTNSTSETLIRLQQMGVARWMISSALTLV 345 (461)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHE
T ss_conf 26977889999998399888999866334
No 365
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=38.94 E-value=15 Score=16.28 Aligned_cols=53 Identities=25% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEEC-CHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 311331000256-5321012577787411102687138851-2354171058999999999986499899998
Q gi|254781101|r 337 GFFTLIDESYNA-NPASMKAAISVLSQISPHGEGRRIAVLG-DMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 (472)
Q Consensus 337 ~~~~iIDDsYNA-nP~S~~aal~~l~~~~~~~~~r~i~VlG-~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~ 407 (472)
..+.+.|...++ +|.+....++.++.+.. .++-+++.- +| +.+.+. +|+|++.
T Consensus 151 P~lLlLDEPtsgLD~~~~~~~~~~i~~l~~--~g~tii~vtHdl---------------~~~~~~-~drii~l 205 (213)
T cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDL---------------GLVLEY-FDRVLLL 205 (213)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCH---------------HHHHHH-CCEEEEE
T ss_conf 999998188667899999999999999996--899999990798---------------999997-9999999
No 366
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=38.92 E-value=19 Score=15.58 Aligned_cols=26 Identities=42% Similarity=0.247 Sum_probs=17.7
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHC
Q ss_conf 9998303-6542012334677775201
Q gi|254781101|r 110 IIAITGS-VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 110 vI~ITGT-nGKTTt~~~l~~iL~~~~~ 135 (472)
+||=|.| .||||++--|-..|+..|.
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~ 30 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGL 30 (451)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 995488888589999999999986687
No 367
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=38.90 E-value=25 Score=14.76 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 0699399983036------542012334677775201
Q gi|254781101|r 105 RSKATIIAITGSV------GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 105 ~~~~~vI~ITGTn------GKTTt~~~l~~iL~~~~~ 135 (472)
+.+++.|-||+-| |||||+-=|.+-|...|+
T Consensus 49 k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK 85 (554)
T COG2759 49 KPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGK 85 (554)
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHHHCCC
T ss_conf 8886089998257888888861254248999986186
No 368
>pfam05577 Peptidase_S28 Serine carboxypeptidase S28. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase.
Probab=38.82 E-value=25 Score=14.75 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=64.4
Q ss_pred CEEEEEEEECCCCCCCC-EEEECCCCC-------CCHHHHHHHHHHCCCEEEEECCCCCCCCC---CCCCCEEEECCHHH
Q ss_conf 14746774022237898-889716887-------47688899999869889998552124554---46972899599899
Q gi|254781101|r 25 GFVNGISIDSRSIAPQE-AFFAIKGPH-------YDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLG 93 (472)
Q Consensus 25 ~~i~~i~~dSr~v~~g~-lFval~g~~-------~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~---~~~~~~i~v~d~~~ 93 (472)
++-..--++++--++|. +||-+-|+- ..| ...+-|-+-||..++.|..+-.... +.....+.-=.+.+
T Consensus 13 TF~qRY~~n~~y~~~ggPifly~gGE~~~~~~~~~~g-~~~~lA~~~~a~~v~lEHRYYG~S~P~~~~s~enL~yLt~~Q 91 (433)
T pfam05577 13 TFQQRYFYNDQHYRNGGPIFLMIGGEGPESASWVRNG-HWLDLAKEFGALVFSLEHRFYGQSKPIGDLSTANLRYLSSLQ 91 (433)
T ss_pred EEEEEEEEECCEECCCCCEEEEECCCCCCCCCCCCCC-HHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 7887799855684699978999899876752311362-899999983996999851035036688998811236478999
Q ss_pred HHHHHHHHHH---HC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999998---30----699399983036542012334677775201
Q gi|254781101|r 94 ALNKLAVAAR---LR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 94 al~~la~~~~---~~----~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~ 135 (472)
||..+|.+.. .+ .+.|+|.+-||.| -||+.-++..++
T Consensus 92 ALaD~a~Fi~~~k~~~~~~~~~pwI~~GGSY~-----G~LaAw~R~kYP 135 (433)
T pfam05577 92 ALADVASFIKAMNQKFNGLSSSKWITFGGSYS-----GSLAAWARKKYP 135 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH-----HHHHHHHHHHCC
T ss_conf 99999999999998637889999899878608-----799999998688
No 369
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=38.78 E-value=14 Score=16.46 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=21.7
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399983---03654201233467777520112
Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
+||.+. |-.||||+.-.++..|...|+.+
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v 33 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRV 33 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 37999618998769999999999999789959
No 370
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.68 E-value=15 Score=16.33 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=19.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++|+.|-| ||||.-.++.-++.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6994999989999989999999958878
No 371
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=38.51 E-value=15 Score=16.27 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=17.8
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHH
Q ss_conf 699399983036--5420123346777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIAL 130 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL 130 (472)
.++.++||.|.| ||||.-.++.-++
T Consensus 29 ~~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 699899999999985899999981895
No 372
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=38.48 E-value=11 Score=17.23 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=16.4
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 22233332210356765101210345543114
Q gi|254781101|r 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 (472)
Q Consensus 289 G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~ 320 (472)
-..+..+++..+--....|.++..+.+.|..+
T Consensus 257 ~~~d~~~~l~~~~~i~~~G~d~~~fl~dLi~~ 288 (541)
T PRK05563 257 IEKDIEKSMEIIDDIVLSGKDIYNFIKDLITH 288 (541)
T ss_pred HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 85899999999999998699999999999999
No 373
>KOG4777 consensus
Probab=38.32 E-value=9.4 Score=17.58 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCHHHH----------HHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCC
Q ss_conf 993999830365420123----------34677775201122212211014574100012322144430156
Q gi|254781101|r 107 KATIIAITGSVGKTTTKE----------MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~----------~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g 168 (472)
..+|+|.||+.|.--..- ||..--+++|+.++-.+|+-..+-+| ++-++|.|-|.-
T Consensus 6 ~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp------~~~~e~~V~ec~ 71 (361)
T KOG4777 6 SAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLP------ESAHEYTVEECT 71 (361)
T ss_pred CCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCHHCCCCC------CHHHHHHHHHCC
T ss_conf 355210343147789998616985134230133314698157604411202465------034341375558
No 374
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.18 E-value=15 Score=16.18 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=21.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||...++.-++..
T Consensus 18 ~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P 46 (276)
T PRK13634 18 PSGSYVAIIGHTGSGKSTLLQHLNGLLKP 46 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999996999999999749998
No 375
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=38.16 E-value=15 Score=16.22 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+.|-| ||||+-.++.-++..
T Consensus 27 ~~Gei~~liGpNGaGKSTLl~~i~Gl~~~ 55 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 39979999889998699999999678888
No 376
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=38.14 E-value=26 Score=14.68 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=12.0
Q ss_pred CCCCHHHHCCC------CHHHHHHHHHCCCCCCCC
Q ss_conf 22101210134------246899875201233333
Q gi|254781101|r 218 EKTGTIFLNYD------DSFFELLKAKSHALGIKT 246 (472)
Q Consensus 218 ~~~g~~ViN~D------d~~~~~l~~~~~~~~~~~ 246 (472)
.+...+|++.. ..++..+...++..+.+.
T Consensus 128 ~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~v 162 (310)
T COG1105 128 ESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKV 162 (310)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 64889999088999999799999999998659839
No 377
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=38.03 E-value=26 Score=14.67 Aligned_cols=11 Identities=18% Similarity=-0.031 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254781101|r 93 GALNKLAVAAR 103 (472)
Q Consensus 93 ~al~~la~~~~ 103 (472)
..+-.+|..+.
T Consensus 21 ~~ll~~A~~~K 31 (304)
T PRK00856 21 ELLLDTAEQFK 31 (304)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 378
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=38.00 E-value=18 Score=15.72 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||-|.| ||||+-.++.-++.
T Consensus 28 ~~GE~~~iiGpNGaGKSTLlk~i~Gll~ 55 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999998999609999999975677
No 379
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=37.94 E-value=26 Score=14.66 Aligned_cols=39 Identities=31% Similarity=0.603 Sum_probs=26.4
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf 531133100025653210125777874111026871388512354
Q gi|254781101|r 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 (472)
Q Consensus 336 ~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~E 380 (472)
.+.+.|+|.+=|.+|..++..|. .+ ..+-|+++.||..+
T Consensus 119 ~n~~iIvDEaQN~t~~~lk~ilT---Ri---G~~SK~vi~GD~~Q 157 (205)
T pfam02562 119 NDAFIILDEAQNTTPEQMKMFLT---RI---GFNSKMVVTGDITQ 157 (205)
T ss_pred CCCEEEEECHHCCCHHHHHHHHH---HC---CCCCEEEEECCHHH
T ss_conf 56889997221399999999984---21---79968999478665
No 380
>PRK03846 adenylylsulfate kinase; Provisional
Probab=37.90 E-value=26 Score=14.66 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 99983069939998303--6542012334677775201
Q gi|254781101|r 100 VAARLRSKATIIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 100 ~~~~~~~~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
+..+...++.||=+||= .||||....+..-|...+.
T Consensus 16 r~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~ 53 (198)
T PRK03846 16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGV 53 (198)
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99986899869998799999889999999999997599
No 381
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=37.56 E-value=26 Score=14.62 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=17.7
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 797999789899999999844789
Q gi|254781101|r 421 SIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 421 ~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
..++..+++.+++...+.+....|
T Consensus 179 ap~~~~~~~y~el~~~i~~~~~~~ 202 (205)
T PRK13582 179 FPQFPVVHDYDDLKKEIDKASARG 202 (205)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 889953068999999999974367
No 382
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=37.49 E-value=15 Score=16.22 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=23.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHHHCC
Q ss_conf 699399983036--5420123346777752011
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~~ 136 (472)
.++.++||-|-+ ||||+..++..+|...+.+
T Consensus 40 ~~GEilgivGeSGsGKSTl~~~i~gll~~~~~~ 72 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANGRI 72 (330)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 899899998689877999999997688888833
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.39 E-value=16 Score=15.98 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 311331000256-532101257778741110268713885
Q gi|254781101|r 337 GFFTLIDESYNA-NPASMKAAISVLSQISPHGEGRRIAVL 375 (472)
Q Consensus 337 ~~~~iIDDsYNA-nP~S~~aal~~l~~~~~~~~~r~i~Vl 375 (472)
..+.++|.-.+. +|.+.+...+.++.+... ++-|++.
T Consensus 114 p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~--g~tvi~~ 151 (173)
T cd03230 114 PELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLS 151 (173)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 9999990886579999999999999999968--9999999
No 384
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.30 E-value=17 Score=15.86 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCC--CCHHHHHHHHHHHH
Q ss_conf 6993999830365--42012334677775
Q gi|254781101|r 106 SKATIIAITGSVG--KTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTnG--KTTt~~~l~~iL~~ 132 (472)
.++.++||.|.|| |||+..++.-++..
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p 59 (280)
T PRK13649 31 LDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999959998699999999669998
No 385
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=37.21 E-value=17 Score=15.95 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=21.2
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 99399983036--542012334677775
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.+.++|+-|-| ||||+-.++.-++..
T Consensus 46 ~Gei~gLlGpNGaGKSTllk~l~Gl~~p 73 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8959999999983099999999649488
No 386
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; InterPro: IPR014165 This entry represents 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin and fluorene. LigK gene has been shown to be, not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase..
Probab=37.18 E-value=27 Score=14.59 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=6.7
Q ss_pred CEEEEEEECCCHHHHHHHH
Q ss_conf 2025553121012344457
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGI 203 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~ 203 (472)
|+.+...-++..=+|||++
T Consensus 77 d~~~~~~t~~~~dG~fG~l 95 (222)
T TIGR02798 77 DVVVAAVTAESEDGYFGDL 95 (222)
T ss_pred CEEEEECCCCCCCCCHHHH
T ss_conf 7799842666666611558
No 387
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.09 E-value=16 Score=15.97 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||-|-| ||||+..++.-++..
T Consensus 31 ~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~ 59 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999996899999999638998
No 388
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=36.94 E-value=11 Score=17.18 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCCEEEEEEEECC--------CCCCCCEEEECCCCCCC-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf 8714746774022--------23789888971688747-----688899999869889998552
Q gi|254781101|r 23 PQGFVNGISIDSR--------SIAPQEAFFAIKGPHYD-----GHDFILHAVQKGAGLVVVNTD 73 (472)
Q Consensus 23 ~~~~i~~i~~dSr--------~v~~g~lFval~g~~~D-----Gh~~i~~A~~~Ga~~~i~~~~ 73 (472)
|-.+|-||-=+-+ .+++++++||=|....- =.+|.++= =|.+.++...+
T Consensus 71 ~~PfIaHV~K~~K~pHYYVvy~~~kn~l~IaDPDpTvg~TK~sK~~F~~EW--TGi~i~i~p~~ 132 (710)
T TIGR01193 71 PLPFIAHVIKEGKLPHYYVVYGVTKNSLLIADPDPTVGITKISKEDFEEEW--TGIAIFIAPTP 132 (710)
T ss_pred CCCEEEEEEECCCCCCEEEEEEEECCEEEEECCCCCCCCEEECHHHHCCCC--CEEEEEEECCC
T ss_conf 997699998078521237897333366788268869762112378840326--40577763788
No 389
>KOG0479 consensus
Probab=36.89 E-value=27 Score=14.56 Aligned_cols=77 Identities=26% Similarity=0.226 Sum_probs=44.7
Q ss_pred CCCEEEECC---CCCCCHHHHHHHHHH----CCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 898889716---887476888999998----6988999855212455446972899599899999999999830699399
Q gi|254781101|r 39 PQEAFFAIK---GPHYDGHDFILHAVQ----KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 (472)
Q Consensus 39 ~g~lFval~---g~~~DGh~~i~~A~~----~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI 111 (472)
..++|=-|- ...-.||+|+++|+- -|.--.+-+- ....-++.++.|.||-.|=.+|=++..+- .+.-|
T Consensus 288 ~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NG----shlRGDINiLlvGDPSvAKSQLLRyVLnt-AplAI 362 (818)
T KOG0479 288 KKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENG----SHLRGDINILLVGDPSVAKSQLLRYVLNT-APLAI 362 (818)
T ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEECCCCC----CEECCCEEEEEECCCHHHHHHHHHHHHHC-CCCCC
T ss_conf 17889998650376203579999999999854501205788----62225203898469527899999999841-54001
Q ss_pred EEEC--CCCCC
Q ss_conf 9830--36542
Q gi|254781101|r 112 AITG--SVGKT 120 (472)
Q Consensus 112 ~ITG--TnGKT 120 (472)
+-|| |.|-.
T Consensus 363 ~TTGRGSSGVG 373 (818)
T KOG0479 363 ATTGRGSSGVG 373 (818)
T ss_pred CCCCCCCCCCC
T ss_conf 03688877755
No 390
>PRK13768 GTPase; Provisional
Probab=36.75 E-value=15 Score=16.34 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=52.3
Q ss_pred EEEEEECCCCCCCCHHH-HHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 13310002565321012-57778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 339 FTLIDESYNANPASMKA-AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 339 ~~iIDDsYNAnP~S~~a-al~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
+-++|-.+-.+|....+ .|.+++.+. +-.-..|.||.-+-=+++ +...++.+|.. +...+.+.
T Consensus 133 v~l~D~~~~~~~~~fiS~~L~a~s~m~-~l~lP~inVlsK~Dll~~---~~~~~i~~~~~------------D~~~l~~~ 196 (253)
T PRK13768 133 VYLIDAVLAKDPSDFVSLLLLALSVQL-RLGLPQIPVLNKIDLLSE---EELERIRKWLE------------DPETLLEE 196 (253)
T ss_pred EEEECHHHHCCHHHHHHHHHHHHHHHH-HCCCCEEEEEEHHHCCCH---HHHHHHHHHHC------------CHHHHHHH
T ss_conf 998450563788799999999999999-739997998676862783---77999999862------------99999999
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 113797999789899999999844789899997713254899999999850
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
+..... ...+-.+++...+.+....-..|-+....+.+|+.+..++.+-|
T Consensus 197 l~~~~~-~~~~l~~~l~~~l~e~~~~v~~ipvS~~~~eg~~~l~~~I~~~~ 246 (253)
T PRK13768 197 LKLDKG-VQGDLAEELLSALEESGIPVRVIPVSAKTGEGFEELYALLQEVF 246 (253)
T ss_pred HHCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 850611-58999999999999846666527756898787999999999996
No 391
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.73 E-value=17 Score=15.85 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||...++.-++..
T Consensus 31 ~~GE~vaivG~nGsGKSTL~k~l~Gl~~p 59 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999996599999999728888
No 392
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211 SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=36.72 E-value=16 Score=16.00 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 210356765101210345543114766443
Q gi|254781101|r 297 LMTLGIVSILTADVDTAIKALSVFHPKEGR 326 (472)
Q Consensus 297 laAia~~~~lGi~~~~i~~~L~~~~~~~GR 326 (472)
.+.|-+|...|+|+++|.++|..+ |+||
T Consensus 47 Va~Ik~AQ~vGipL~~I~~ALa~L--P~gr 74 (142)
T TIGR01950 47 VAVIKVAQRVGIPLAEIAEALAEL--PEGR 74 (142)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHC--CCCC
T ss_conf 674332332589888999999734--6889
No 393
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=36.65 E-value=15 Score=16.26 Aligned_cols=29 Identities=41% Similarity=0.440 Sum_probs=20.8
Q ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399983--03654201233467777520112
Q gi|254781101|r 109 TIIAIT--GSVGKTTTKEMLTIALSSIKKTY 137 (472)
Q Consensus 109 ~vI~IT--GTnGKTTt~~~l~~iL~~~~~~~ 137 (472)
+-|||- |-.|||||+.-|+..|....+|.
T Consensus 3 ~~iAiyGKGGIGKSTt~~NlaaalA~g~rVl 33 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSSDNSTL 33 (264)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 2899978985478889999999998799779
No 394
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=36.64 E-value=17 Score=15.89 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHH
Q ss_conf 699399983036--5420123346777752
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSI 133 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~ 133 (472)
.++.++|+-|-| ||||+-.++.-++...
T Consensus 24 ~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~ 53 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPD 53 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 698199999999999999999995783789
No 395
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=36.52 E-value=27 Score=14.52 Aligned_cols=53 Identities=23% Similarity=0.129 Sum_probs=25.3
Q ss_pred CCCCCHHHHHCCCCCCCCC---CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2322144430156644332---1121223232202555312101234445788886543310
Q gi|254781101|r 156 MPVDVDFGIFELGMSHLGE---IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 (472)
Q Consensus 156 ~~~~~~~~V~E~g~~~~ge---i~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~ 214 (472)
+..+.++.++=-+++++-. -..++-..+|.||++|-+... ..++|...|.-|.
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLa------ed~dI~~~~~~L~ 116 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLA------EDADISLVKRWLR 116 (148)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCC------CHHHHHHHHHHHH
T ss_conf 7611332554300268444488421344666558998603466------4676899999999
No 396
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.39 E-value=17 Score=15.89 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH-HHHCC
Q ss_conf 699399983036--54201233467777-52011
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS-SIKKT 136 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~-~~~~~ 136 (472)
.++.++||.|-| ||||.-.++.-++. ..|.+
T Consensus 31 ~~Ge~~~iiG~nGsGKSTLl~~l~Gll~P~sG~V 64 (286)
T PRK13641 31 EDGSFVALIGHTGSGKSTLMQHFNALLKPSSGKI 64 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 6999999999998399999999965989885499
No 397
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.31 E-value=17 Score=15.87 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||+-.++.-+++.
T Consensus 25 ~~Gei~~liGpNGaGKSTLlk~l~Gl~~p 53 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 38979999999998099999999668888
No 398
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=36.12 E-value=18 Score=15.67 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=22.0
Q ss_pred CEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 14746774022237898889716887476888999998
Q gi|254781101|r 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 (472)
Q Consensus 25 ~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~ 62 (472)
..++++++ .|.+|+. +||-|.+--|-.=+-.++.
T Consensus 17 ~ll~~vsl---~I~~Ge~-vgLVG~NGsGKSTLl~iL~ 50 (632)
T PRK11147 17 PLLDNAEL---HIEDNER-VCLVGRNGAGKSTLMKILS 50 (632)
T ss_pred EEEECCEE---EECCCCE-EEEECCCCCHHHHHHHHHH
T ss_conf 68986259---9989989-9999999987999999983
No 399
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=36.04 E-value=17 Score=15.87 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+.|-| ||||+-.++.-+++.
T Consensus 24 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~p 52 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89989999999998599999999779889
No 400
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=35.98 E-value=17 Score=15.90 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=19.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++|+.|.| ||||+-.++.-+++
T Consensus 29 ~~Gei~~liG~NGaGKSTLl~~i~G~~~ 56 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6997999987999759999999967998
No 401
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=35.95 E-value=28 Score=14.46 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=12.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 3069939998303654201233467
Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTI 128 (472)
Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~ 128 (472)
++..+-+++-||| |||.+...+..
T Consensus 17 ~~~~~~i~~pTGs-GKT~~~~~~i~ 40 (103)
T pfam04851 17 EKKRGLIVMATGS-GKTLTAAKLIA 40 (103)
T ss_pred HCCCEEEEECCCC-CHHHHHHHHHH
T ss_conf 6398699958999-87999999999
No 402
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.64 E-value=18 Score=15.77 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||.-.+++-++..
T Consensus 28 ~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p 56 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999995799999999759998
No 403
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=35.64 E-value=17 Score=15.81 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHHH
Q ss_conf 699399983036--5420123346777752
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSSI 133 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~~ 133 (472)
.++.++|+-|-| ||||+-.|+.-++...
T Consensus 26 ~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~ 55 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPD 55 (301)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 598199999999981999999996795689
No 404
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=35.55 E-value=13 Score=16.66 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHH-HH-CCCCC
Q ss_conf 6542012334677775-20-11222
Q gi|254781101|r 117 VGKTTTKEMLTIALSS-IK-KTYAC 139 (472)
Q Consensus 117 nGKTTt~~~l~~iL~~-~~-~~~~t 139 (472)
.||||..+.+...|.. .| .++.|
T Consensus 13 aGKTT~~~~l~~~l~~l~g~~~~~t 37 (211)
T TIGR00041 13 AGKTTQLNLLKKLLKELEGYKVLFT 37 (211)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7589999999999775138347887
No 405
>PRK07560 elongation factor EF-2; Reviewed
Probab=35.43 E-value=28 Score=14.41 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 3210125777874
Q gi|254781101|r 350 PASMKAAISVLSQ 362 (472)
Q Consensus 350 P~S~~aal~~l~~ 362 (472)
.+.+..+|+-|..
T Consensus 404 ~~kL~~aL~~L~~ 416 (730)
T PRK07560 404 LPKLIEVLRQLAK 416 (730)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999884
No 406
>PRK12367 short chain dehydrogenase; Provisional
Probab=35.28 E-value=29 Score=14.39 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=19.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0699399983036542012334677775201122
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~ 138 (472)
.++.+.|||||-+|= -=++++.+..+...+|.+
T Consensus 14 ~~kgKtIgITGAsGa-LG~AL~k~f~~~GakVIa 46 (250)
T PRK12367 14 RWNGKRIGITGASGA-LGKALTKLFRAKGAKVIG 46 (250)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEE
T ss_conf 638987999678738-999999999988998999
No 407
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=35.27 E-value=24 Score=14.94 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=17.1
Q ss_pred EEEEECC--CCCCHHHHHHHHHHH
Q ss_conf 9998303--654201233467777
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALS 131 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~ 131 (472)
+|.|.|- .||||+..+|+..|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 799617999970279999999829
No 408
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.26 E-value=18 Score=15.68 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||-|.| ||||.-.++.-++.
T Consensus 30 ~~Ge~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILK 57 (285)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999809999999965988
No 409
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=35.09 E-value=18 Score=15.78 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.+..++|+.|-| ||||.-.++.-.+.
T Consensus 24 ~~ge~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999998999849999999848988
No 410
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.09 E-value=17 Score=15.85 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=20.3
Q ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 399983--036542012334677775201
Q gi|254781101|r 109 TIIAIT--GSVGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 109 ~vI~IT--GTnGKTTt~~~l~~iL~~~~~ 135 (472)
+++-+| |-.||||++.-++--|.+.|+
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~ 31 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGK 31 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 79999368854589999999999997599
No 411
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.94 E-value=19 Score=15.53 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=20.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|.| ||||...++.-++..
T Consensus 33 ~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p 61 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59989999999999799999999649799
No 412
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=34.93 E-value=29 Score=14.35 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCCCCHHH-HHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---HHHHHHHCCCCCC
Q ss_conf 65321012-5777874111026871388512354171058999999999986499899998803---8989985113797
Q gi|254781101|r 348 ANPASMKA-AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLALKDALPRSIH 423 (472)
Q Consensus 348 AnP~S~~a-al~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~---~~~~~~~~~~~~~ 423 (472)
.+|.|+-. |++........-.+++++|+|. |+-. +.+.+.+.+.++..+++..-. +..+++.+ +..
T Consensus 156 ~~~vSv~~~av~~a~~~~~~l~~~~vLviGa----Gem~----~l~~~~L~~~g~~~i~v~nRt~~ra~~la~~~--g~~ 225 (311)
T cd05213 156 RGAVSISSAAVELAEKIFGNLKGKKVLVIGA----GEMG----ELAAKHLAAKGVAEITIANRTYERAEELAKEL--GGN 225 (311)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEECC----CHHH----HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC--CCE
T ss_conf 8988899999999998718721167999868----7999----99999999659982599768678999999974--989
Q ss_pred EEEECCHHHHHHHHHHHCCCCCEEEEE-CCC
Q ss_conf 999789899999999844789899997-713
Q gi|254781101|r 424 VHYSETMDGLFLFIQSSLVDGDVVVVK-SSN 453 (472)
Q Consensus 424 ~~~~~~~e~a~~~l~~~~~~gdiVLiK-GSr 453 (472)
.. ..++ +.+.+..-|+|... ||-
T Consensus 226 --~~-~~~~----l~~~l~~~DvvisaT~s~ 249 (311)
T cd05213 226 --AV-PLDE----LLELLNEADVVISATGAP 249 (311)
T ss_pred --EE-CHHH----HHHHHHHCCEEEEECCCC
T ss_conf --97-2999----999997689999927999
No 413
>KOG0927 consensus
Probab=34.92 E-value=29 Score=14.35 Aligned_cols=38 Identities=39% Similarity=0.435 Sum_probs=21.3
Q ss_pred ECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 789899999999844789899997713254899999999850577
Q gi|254781101|r 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 (472)
Q Consensus 427 ~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~~~~ 471 (472)
.++.+.+.+++.+ -+|.+||+ |+-+ +++.+.-++.|.+
T Consensus 542 i~tid~laeaiNe--~~Ggvv~v--SHDf---rlI~qVaeEi~~c 579 (614)
T KOG0927 542 IETIDALAEAINE--FPGGVVLV--SHDF---RLISQVAEEIWVC 579 (614)
T ss_pred CHHHHHHHHHHHC--CCCCEEEE--ECHH---HHHHHHHHHHHHH
T ss_conf 5069999999852--67851553--2123---4899887776701
No 414
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=34.76 E-value=19 Score=15.60 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|.| ||||.-.++.-++.
T Consensus 25 ~~Ge~~aliG~sGsGKSTLl~~l~gl~~ 52 (248)
T PRK11264 25 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7998999999999809999999975899
No 415
>PRK10908 cell division protein FtsE; Provisional
Probab=34.61 E-value=17 Score=15.86 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||+-.++.-++..
T Consensus 26 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 54 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999980799999999659999
No 416
>KOG0447 consensus
Probab=34.59 E-value=22 Score=15.12 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=15.0
Q ss_pred CCCEEEEEC--CCCCCHHHHHHHHH
Q ss_conf 993999830--36542012334677
Q gi|254781101|r 107 KATIIAITG--SVGKTTTKEMLTIA 129 (472)
Q Consensus 107 ~~~vI~ITG--TnGKTTt~~~l~~i 129 (472)
+.|.|-|-| |.||||+-+|+++.
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447 307 HLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 6862799756666622899999874
No 417
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=34.56 E-value=20 Score=15.40 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=28.9
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 00256532101257778741110268713885123541710589999999999864998
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472)
-+|+.||.||.+++.+|+.+.... ++..+.++|++ +.+.+-+.+.+.++.
T Consensus 298 gTf~gnpla~AAa~a~L~~l~~~~------l~~~~~~~G~~---l~~~l~~~~~~~~~~ 347 (429)
T PRK00062 298 GTLSGNPLAMAAGLATLRLLDQEG------VYETLDALTDR---LAEGLKEAAEKAGIP 347 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC------HHHHHHHHHHH---HHHHHHHHHHHCCCC
T ss_conf 878888799999999999997357------99999999999---999999999877998
No 418
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=34.55 E-value=20 Score=15.46 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.8
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|-| ||||.-.++.-++.
T Consensus 28 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6998999999999989999999967971
No 419
>pfam01784 NIF3 NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.
Probab=34.51 E-value=29 Score=14.31 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=15.5
Q ss_pred CCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 71388512354171058999999999986499899998803
Q gi|254781101|r 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 (472)
Q Consensus 370 r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~ 410 (472)
++++|.| |..+. +.+.+...++| +|+.|+-
T Consensus 171 ~~Vai~~-----GsG~~-----~i~~a~~~gaD-~~ITGd~ 200 (238)
T pfam01784 171 KKVAICG-----GSGSS-----LIEEAKAKGAD-LLITGEL 200 (238)
T ss_pred EEEEEEC-----CCCHH-----HHHHHHHCCCC-EEEECCC
T ss_conf 6899974-----66677-----89998757996-9997688
No 420
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=34.43 E-value=30 Score=14.30 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=28.8
Q ss_pred CEEEECCHHHHHHHHHHHHHHC-C-----------CCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 2899599899999999999830-6-----------99399983036--54201233467777
Q gi|254781101|r 84 PVFGVDDVLGALNKLAVAARLR-S-----------KATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 84 ~~i~v~d~~~al~~la~~~~~~-~-----------~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
+.+.|+|.-+.+..-+..+|.+ + ....+||-|-| ||+|...|++-+..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~ 64 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 12221433443333354555644520041578960796799982699747589999835558
No 421
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=34.37 E-value=21 Score=15.29 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=19.8
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++..|||.|.+ ||||...++.-++.
T Consensus 28 ~~G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7999999999999859999999967254
No 422
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.34 E-value=19 Score=15.62 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=19.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|.| ||||.-.+|+-++.
T Consensus 31 ~~Gei~~llG~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 0984999998999988999999837878
No 423
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=34.29 E-value=26 Score=14.71 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=20.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++..|||.|-| ||||.-.++.-++..
T Consensus 32 ~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 69999999999998799999999987288
No 424
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=34.29 E-value=30 Score=14.29 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHHHC
Q ss_conf 56532101257778741110
Q gi|254781101|r 347 NANPASMKAAISVLSQISPH 366 (472)
Q Consensus 347 NAnP~S~~aal~~l~~~~~~ 366 (472)
.|||.||.+|++...++..+
T Consensus 310 ~A~~~s~~~Ai~~a~~~a~~ 329 (333)
T PRK03743 310 IASSVSMEEAIKLAAKYAPK 329 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 89969999999999999987
No 425
>PRK13946 shikimate kinase; Provisional
Probab=34.25 E-value=18 Score=15.73 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=17.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0699399983036542012334677775
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSS 132 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~ 132 (472)
+-+.-+||..| .||||+-..|+..|.-
T Consensus 20 kknIvLIG~mG-sGKStvGk~LA~~L~~ 46 (195)
T PRK13946 20 KRTVVLVGLMG-AGKSTVGRRLATMLGL 46 (195)
T ss_pred CCCEEEECCCC-CCHHHHHHHHHHHHCC
T ss_conf 99589989999-9889999999999797
No 426
>PRK13695 putative NTPase; Provisional
Probab=34.18 E-value=26 Score=14.64 Aligned_cols=25 Identities=40% Similarity=0.340 Sum_probs=14.9
Q ss_pred EEEEECC--CCCCHHHHHHHHHHHHHH
Q ss_conf 9998303--654201233467777520
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472)
-|.|||- .||||...=+...|+..+
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g 31 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREG 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999878999889999999999986369
No 427
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=34.18 E-value=22 Score=15.13 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=11.1
Q ss_pred EEECCC-------CCCCCEEEE
Q ss_conf 740222-------378988897
Q gi|254781101|r 31 SIDSRS-------IAPQEAFFA 45 (472)
Q Consensus 31 ~~dSr~-------v~~g~lFva 45 (472)
|.|||- .+||++|+.
T Consensus 10 C~DSRv~p~~i~~~~pGdlfv~ 31 (142)
T cd03379 10 CMDARLDPEKALGLKLGDAKVI 31 (142)
T ss_pred ECCCCCCHHHHCCCCCCCEEEE
T ss_conf 6254879899709998747999
No 428
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=34.16 E-value=19 Score=15.53 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=35.4
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEE---EEECCCCCC
Q ss_conf 9999986988999855212455446972899599899999999999830699399---983036542
Q gi|254781101|r 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII---AITGSVGKT 120 (472)
Q Consensus 57 i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI---~ITGTnGKT 120 (472)
+.+|++.|=.-|||=.....+ ...|--+|+-++.-+.+|++. -+|.+.|+| |..|....+
T Consensus 115 L~KAL~~gLkPIVViNKiDrp---~ARP~eV~d~vFDLF~~LgA~-deQLDFP~vYASa~~G~A~l~ 177 (609)
T TIGR01394 115 LKKALELGLKPIVVINKIDRP---SARPDEVVDEVFDLFIELGAD-DEQLDFPIVYASARAGWASLD 177 (609)
T ss_pred HHHHHHCCCCEEEEECCCCCC---CCCHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHCCCCCCCC
T ss_conf 999995689369997134788---788378875787888853888-001012567665236720144
No 429
>PRK01506 consensus
Probab=34.12 E-value=30 Score=14.27 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=41.2
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 11331000256532101257778741110268713885123541710589999999999864998999988038989985
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~ 417 (472)
.+.|+||== .+-.+|..|.+.|+.. +. ++|.+...= |-.+..- .+.+...+++.+++.-.-.. -+.
T Consensus 219 ~vIIVDDiI-~TGgTl~~aa~~Lk~~---GA-~~V~~~~TH---glfs~~A----~~rl~~s~i~~iv~TnTip~--p~~ 284 (317)
T PRK01506 219 TAILIDDII-DTAGTITLAANALVEN---GA-SEVYACCTH---PVLSGPA----IERIQNSKIKELVVTNSIVL--PEE 284 (317)
T ss_pred EEEEECCHH-HCCCHHHHHHHHHHHC---CC-CEEEEEEEC---CCCCCHH----HHHHHCCCCCEEEEECCCCC--CHH
T ss_conf 278751322-1350599999999865---99-758999977---0068179----99986189988999388448--612
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 113797999789899999999844789
Q gi|254781101|r 418 LPRSIHVHYSETMDGLFLFIQSSLVDG 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~e~a~~~l~~~~~~g 444 (472)
+...++... +...++..+...+..|
T Consensus 285 -~~~~kl~vl-sva~llAeaI~ri~~~ 309 (317)
T PRK01506 285 -KKIDKVHEL-SVAPLIAEAIIRVYEE 309 (317)
T ss_pred -HCCCCCEEE-EHHHHHHHHHHHHHCC
T ss_conf -337983998-8499999999998679
No 430
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.10 E-value=20 Score=15.43 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||-|.| ||||...++.-++..
T Consensus 30 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p 58 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59989999999994799999999748888
No 431
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.04 E-value=20 Score=15.48 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=19.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++..|||+|.+ ||||.-.++.-++.
T Consensus 27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7999999999999809999999966866
No 432
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=33.97 E-value=30 Score=14.25 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=19.8
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHHHHC
Q ss_conf 99399983036--542012334677775201
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~~~~~ 135 (472)
..++..|+|++ ||||.-+-|.+.| .|+
T Consensus 29 sl~~f~i~G~tGAGKtsLldAI~yAL--YGk 57 (1063)
T TIGR00618 29 SLKLFVICGKTGAGKTSLLDAITYAL--YGK 57 (1063)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH--CCC
T ss_conf 25736777889983545999999987--288
No 433
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=33.90 E-value=19 Score=15.50 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
..+.++||.|-| ||||+-.+++-++..
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p 56 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999998699999999669999
No 434
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=33.88 E-value=21 Score=15.32 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=20.6
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||.|-| ||||.-.++.-++..
T Consensus 31 ~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p 59 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59969999999999999999999646688
No 435
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=33.86 E-value=28 Score=14.44 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=27.0
Q ss_pred CHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECC
Q ss_conf 678899872799952688714746774022237898889716
Q gi|254781101|r 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK 47 (472)
Q Consensus 6 ~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~ 47 (472)
....+|+--+|..+-..-++.+=....-|++.++|.=||+|.
T Consensus 10 etGklAkqA~GsV~v~~GdT~VL~T~~~~~~~~~~~DFfPLt 51 (684)
T TIGR03591 10 ETGKIARQADGAVVVRYGDTVVLVTVVAAKEAKEGQDFFPLT 51 (684)
T ss_pred ECCHHHHHCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCE
T ss_conf 745335416842999989969999998148888999977754
No 436
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=33.81 E-value=11 Score=17.02 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHC--CCCCEEEEECCCCCCHH
Q ss_conf 9999999999830--69939998303654201
Q gi|254781101|r 93 GALNKLAVAARLR--SKATIIAITGSVGKTTT 122 (472)
Q Consensus 93 ~al~~la~~~~~~--~~~~vI~ITGTnGKTTt 122 (472)
+.+.++|....+. ...+++-|.+--|++|-
T Consensus 15 e~i~~va~iI~~~~~~g~~viVVvSA~gg~Td 46 (239)
T cd04246 15 ERIKRVAERIKKAVKKGYQVVVVVSAMGGTTD 46 (239)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH
T ss_conf 99999999999998679829999848986567
No 437
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995 This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=33.49 E-value=31 Score=14.20 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCEEEEECC-CHHHHHHHCC-CCCCEEEECCHHHHHHH--HHHHCCCCCEEEEE-CCCHHHHHHHHHHHH
Q ss_conf 9999998649989999880-3898998511-37979997898999999--99844789899997-713254899999999
Q gi|254781101|r 391 DLAEVLSLYNISHVWLSGF-HVLALKDALP-RSIHVHYSETMDGLFLF--IQSSLVDGDVVVVK-SSNSCGFYRLINLLL 465 (472)
Q Consensus 391 ~i~~~~~~~~~d~v~~~G~-~~~~~~~~~~-~~~~~~~~~~~e~a~~~--l~~~~~~gdiVLiK-GSr~~~le~iv~~L~ 465 (472)
+|.+.+.+.+...+++..- ++..+.+.-. +....+.++.+--++-- -.+.-+.||+.++| |. .|..|+..++
T Consensus 436 ri~~~~~~~g~~~llTADHGNAE~M~De~~G~P~T~HT~npVPfv~~~GeGrk~~~~G~~~~~~eGG---~L~dIAPT~L 512 (529)
T TIGR01307 436 RIVEACKKVGGTLLLTADHGNAEEMKDENGGNPHTAHTTNPVPFVYVGGEGRKIPKNGDVKLVREGG---VLADIAPTIL 512 (529)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCEEEEECCC---CCCCHHHHHH
T ss_conf 9999997489629996055660016788887730115578634688588430456787764541674---4213578899
Q ss_pred H
Q ss_conf 8
Q gi|254781101|r 466 E 466 (472)
Q Consensus 466 ~ 466 (472)
+
T Consensus 513 ~ 513 (529)
T TIGR01307 513 D 513 (529)
T ss_pred H
T ss_conf 9
No 438
>pfam03142 Chitin_synth_2 Chitin synthase. Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They catalyse chitin synthesis as follows: UDP-N-acetyl-D-glucosamine + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <= UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Probab=33.31 E-value=31 Score=14.19 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=7.2
Q ss_pred ECCCCCCHHHHHHHHHHH
Q ss_conf 303654201233467777
Q gi|254781101|r 114 TGSVGKTTTKEMLTIALS 131 (472)
Q Consensus 114 TGTnGKTTt~~~l~~iL~ 131 (472)
+|+--.-||-+.+-.+|.
T Consensus 69 ~G~G~~~~Tp~i~l~im~ 86 (536)
T pfam03142 69 KGSGNDRSTPDIVLDMMK 86 (536)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 158888781799999850
No 439
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=33.19 E-value=31 Score=14.17 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=4.2
Q ss_pred CCCCCEEEEECC
Q ss_conf 478989999771
Q gi|254781101|r 441 LVDGDVVVVKSS 452 (472)
Q Consensus 441 ~~~gdiVLiKGS 452 (472)
+.+|+-.-||||
T Consensus 500 L~~G~pCPVCGS 511 (1047)
T PRK10246 500 LQAGQPCPLCGS 511 (1047)
T ss_pred CCCCCCCCCCCC
T ss_conf 479998999999
No 440
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=33.11 E-value=22 Score=15.17 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=14.8
Q ss_pred EEEEECC--CCCCHHHHHHHHHH
Q ss_conf 9998303--65420123346777
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL 130 (472)
+|+|-|. .||||...+|+..|
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98998888888999999999966
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.03 E-value=21 Score=15.32 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+-|-| ||||+-.|+.-+++.
T Consensus 24 ~~Gei~gllGpNGAGKSTll~~i~Gl~~p 52 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89839999999987199999999769788
No 442
>PRK13137 consensus
Probab=32.79 E-value=31 Score=14.13 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHH---CCCCCEE-EE-ECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH
Q ss_conf 89999999999983---0699399-98-303654201233467777520112221221101457410
Q gi|254781101|r 91 VLGALNKLAVAARL---RSKATII-AI-TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 (472)
Q Consensus 91 ~~~al~~la~~~~~---~~~~~vI-~I-TGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt 152 (472)
+.+.|.++-..+.+ +-..-.| =+ .|--...++.+.+..+. .+... =+||+|+|
T Consensus 5 ~~~~m~Ri~~~F~~~k~~~~~ali~yitaG~P~~~~s~~~~~~l~--~gaDi-------iElGiPFS 62 (266)
T PRK13137 5 TNRGVQRLHAAFARARAEGRAAFIPFLTAGYPSAAGFLQVAEELL--AYADL-------LEVGIPYS 62 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--CCCCE-------EEECCCCC
T ss_conf 020488999999999976995388786681888789999999997--38998-------99789988
No 443
>PRK13948 shikimate kinase; Provisional
Probab=32.78 E-value=13 Score=16.66 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=15.9
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf 39998303--65420123346777752
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSSI 133 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~~ 133 (472)
+.|...|= .||||+-..|+..|.-.
T Consensus 11 ~~IvLIG~mGsGKStiGk~LA~~l~~~ 37 (182)
T PRK13948 11 TFVALAGFMGTGKSRIGWELSRALALH 37 (182)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 818988999998899999999996959
No 444
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=32.77 E-value=31 Score=14.13 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHCCCCC-EEEEECC--CCCCHHHH
Q ss_conf 98999999999998306993-9998303--65420123
Q gi|254781101|r 90 DVLGALNKLAVAARLRSKAT-IIAITGS--VGKTTTKE 124 (472)
Q Consensus 90 d~~~al~~la~~~~~~~~~~-vI~ITGT--nGKTTt~~ 124 (472)
|..++...+-.......+.+ -|||||- +||+|--.
T Consensus 16 ~l~~a~s~I~e~L~~~~~~~lnIavtGesG~GkSsfIN 53 (375)
T pfam05049 16 NLQKVVSIIKKAIQEISSAPLKIAVTGDSGNGKSSFIN 53 (375)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 98999999999997544382479985489986789999
No 445
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=32.75 E-value=31 Score=14.13 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 65321012577787411
Q gi|254781101|r 348 ANPASMKAAISVLSQIS 364 (472)
Q Consensus 348 AnP~S~~aal~~l~~~~ 364 (472)
|||.||.+|++.-..+.
T Consensus 307 A~~~s~~~Ai~~A~~~a 323 (329)
T PRK01909 307 ADPGSMIAAIDTAVTMA 323 (329)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 99699999999999999
No 446
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=32.68 E-value=31 Score=14.12 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHC
Q ss_conf 99999998649989999880389899851
Q gi|254781101|r 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL 418 (472)
Q Consensus 390 ~~i~~~~~~~~~d~v~~~G~~~~~~~~~~ 418 (472)
..+++.+.+.++|-+++.+.+...+++..
T Consensus 139 ~~~a~~a~~~g~dGiVcs~~e~~~ir~~~ 167 (231)
T PRK00230 139 LRLAKLAQEAGLDGVVCSAQEAAALREAT 167 (231)
T ss_pred HHHHHHHHHHCCCEEECCHHHHHHHHHHC
T ss_conf 99999999969984863888999998645
No 447
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=32.49 E-value=22 Score=15.19 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=20.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.+++|.|-| ||||+-.++.-++.
T Consensus 25 ~~Ge~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999809999999963899
No 448
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=32.32 E-value=22 Score=15.09 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
..+.++||-|-| ||||.-.++.-++.
T Consensus 26 ~~Gei~~liGpNGaGKSTLlk~i~Gl~~ 53 (257)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELP 53 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6998999999999879999999856757
No 449
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=32.27 E-value=32 Score=14.07 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=4.0
Q ss_pred HHHHHHHHCC
Q ss_conf 0345543114
Q gi|254781101|r 311 DTAIKALSVF 320 (472)
Q Consensus 311 ~~i~~~L~~~ 320 (472)
++|++++..+
T Consensus 105 ~TirkSi~kL 114 (227)
T TIGR01011 105 KTIRKSIKKL 114 (227)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 450
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=32.19 E-value=23 Score=15.03 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=15.4
Q ss_pred EEEEECC--CCCCHHHHHHHHHH
Q ss_conf 9998303--65420123346777
Q gi|254781101|r 110 IIAITGS--VGKTTTKEMLTIAL 130 (472)
Q Consensus 110 vI~ITGT--nGKTTt~~~l~~iL 130 (472)
+|+|-|. .||||...+|+.-|
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l 23 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98996785679999999999985
No 451
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.19 E-value=22 Score=15.15 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHH
Q ss_conf 699399983036--5420123346777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIAL 130 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL 130 (472)
.++..|||+|.+ ||||.-.++..++
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999899982999999996676
No 452
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=32.01 E-value=24 Score=14.89 Aligned_cols=51 Identities=18% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 95435678899872799952688714746774022237898889716887476888999998
Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 (472)
Q Consensus 1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~ 62 (472)
|.||..++.+...-++.. -.+++++ .+.+|.+ ++|-|.+--|-.=+-.++.
T Consensus 1 M~~il~v~~l~k~y~~~~-------aL~~vsl---~i~~Gei-~~liG~nGaGKSTL~~~l~ 51 (501)
T PRK10762 1 MEALLQLKGIDKAFPGVK-------ALSGAAL---NVYPGRV-MALVGENGAGKSTLMKVLT 51 (501)
T ss_pred CCEEEEEEEEEEEECCEE-------EECCEEE---EECCCCE-EEEECCCCCHHHHHHHHHH
T ss_conf 961599963599999999-------8855478---9989969-9998999982999999995
No 453
>KOG2749 consensus
Probab=31.91 E-value=32 Score=14.04 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=27.3
Q ss_pred CEEEECCHHHHHHHHHHHHHH-CCCCC-EEEEECCC-CCCHHHHHHH-HHHHHH
Q ss_conf 289959989999999999983-06993-99983036-5420123346-777752
Q gi|254781101|r 84 PVFGVDDVLGALNKLAVAARL-RSKAT-IIAITGSV-GKTTTKEMLT-IALSSI 133 (472)
Q Consensus 84 ~~i~v~d~~~al~~la~~~~~-~~~~~-vI~ITGTn-GKTTt~~~l~-~iL~~~ 133 (472)
|...-=|...+|......+-. ...+| ++-|-+|+ ||||.+.||- ..+++.
T Consensus 78 pM~~ylNlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~g 131 (415)
T KOG2749 78 PMVLYLNLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQG 131 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 730001399999998665542002597799989876566789999999998717
No 454
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=31.89 E-value=28 Score=14.45 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=13.5
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf 998306993999830365420123
Q gi|254781101|r 101 AARLRSKATIIAITGSVGKTTTKE 124 (472)
Q Consensus 101 ~~~~~~~~~vI~ITGTnGKTTt~~ 124 (472)
+.-...+.+-|=|.|-.|...++.
T Consensus 84 yAv~~L~v~~IiV~GH~~CGav~a 107 (207)
T COG0288 84 YAVYVLGVKEIIVCGHTDCGAVKA 107 (207)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 999974998899966898478770
No 455
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=31.88 E-value=24 Score=14.89 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 95435678899872799952688714746774022237898889716887476888999998
Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 (472)
Q Consensus 1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~ 62 (472)
|.||..++.+-..-++. .-+++|++ ++.+|.+ ++|-|.+--|-.=+-.++.
T Consensus 2 m~~ll~v~~l~~~~g~~-------~aL~~vsl---~i~~Ge~-~~lvG~nGsGKSTL~~~l~ 52 (513)
T PRK13549 2 MPYLLEMKNITKTFGGV-------KALDNISL---RVRAGEI-VSLCGENGAGKSTLMKVLS 52 (513)
T ss_pred CCHHEEEEEEEEEECCE-------EEECCEEE---EECCCCE-EEEECCCCCHHHHHHHHHH
T ss_conf 60687996179998999-------99756389---9889979-9998999972999999995
No 456
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=31.80 E-value=33 Score=14.02 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9999999844789899997713
Q gi|254781101|r 432 GLFLFIQSSLVDGDVVVVKSSN 453 (472)
Q Consensus 432 ~a~~~l~~~~~~gdiVLiKGSr 453 (472)
..++.+++.....|+|-+.+-|
T Consensus 311 ~~~e~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK00676 311 KQWESYEKKSSHIDCVQINAPR 332 (338)
T ss_pred HHHHHHHHHCCCCCCHHHCCCC
T ss_conf 9999998650558802312686
No 457
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=31.62 E-value=23 Score=15.03 Aligned_cols=27 Identities=44% Similarity=0.492 Sum_probs=21.2
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++|+-|-| ||||+-.++.-++..
T Consensus 26 ~~Gei~~llG~NGaGKSTLl~~i~Gl~~p 54 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 49959999989997399999999669878
No 458
>pfam05711 TylF Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex.
Probab=31.59 E-value=30 Score=14.27 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=6.1
Q ss_pred CCCEEEEEECCC
Q ss_conf 531133100025
Q gi|254781101|r 336 QGFFTLIDESYN 347 (472)
Q Consensus 336 ~~~~~iIDDsYN 347 (472)
.||+.+||| |+
T Consensus 205 ~GG~iiiDD-Y~ 215 (249)
T pfam05711 205 PGGFVIVDD-YC 215 (249)
T ss_pred CCCEEEEEC-CC
T ss_conf 882899926-89
No 459
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=31.47 E-value=23 Score=14.98 Aligned_cols=138 Identities=20% Similarity=0.334 Sum_probs=78.2
Q ss_pred ECCCCC-CCHH----HHHHHH-------HHCCCEEEEECCCCCCCCCCCCCCEEE--E-CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 716887-4768----889999-------986988999855212455446972899--5-998999999999998306993
Q gi|254781101|r 45 AIKGPH-YDGH----DFILHA-------VQKGAGLVVVNTDMVASIGSLSIPVFG--V-DDVLGALNKLAVAARLRSKAT 109 (472)
Q Consensus 45 al~g~~-~DGh----~~i~~A-------~~~Ga~~~i~~~~~~~~~~~~~~~~i~--v-~d~~~al~~la~~~~~~~~~~ 109 (472)
+|||+. +|++ .=|+.| -+-|+=+++.|... +.|+.. | ..+..||..++....+.-..|
T Consensus 12 pLPGs~~~~~~lGl~~vid~A~~da~aL~~GG~DAv~~eN~f-------d~PF~kq~v~~~tvAAMa~I~~~l~~~v~~P 84 (261)
T TIGR00259 12 PLPGSPSFDDNLGLNAVIDKAVKDAKALEEGGVDAVILENFF-------DAPFLKQEVDPETVAAMAVIAKELKEDVSIP 84 (261)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 876397638755648999999999999985698789985246-------8697765056344318899999887512046
Q ss_pred EEEEECCCCCCHHHHHHH----------HHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 999830365420123346----------7777520112221221101457410001232214443015664433211212
Q gi|254781101|r 110 IIAITGSVGKTTTKEMLT----------IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 (472)
Q Consensus 110 vI~ITGTnGKTTt~~~l~----------~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~ 179 (472)
+ || ..|. ..-...+-.+ |-.-|+. -+|.-|+| ...||+-++.
T Consensus 85 l-Gi----------NvLrNDa~aa~~iA~~v~A~FiRV------n~L~G~~--------~sD~G~~e---g~a~E~~ry~ 136 (261)
T TIGR00259 85 L-GI----------NVLRNDAVAALAIAKAVGAKFIRV------NVLTGVA--------ASDQGIIE---GNAGELLRYK 136 (261)
T ss_pred C-CE----------EEECCCHHHHHHHHHHHCCCEEEE------EEEEEEE--------ECCCCCEE---CCHHHHHHHH
T ss_conf 4-10----------121234777898867647726898------5332125--------53674000---4165433433
Q ss_pred CCCCC-CEEEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCC
Q ss_conf 23232-20255531210123444--578888654331037622
Q gi|254781101|r 180 HLVRP-HIAVITTIAPAHLSNFS--GIEEIASAKAEIFEGLEK 219 (472)
Q Consensus 180 ~i~~P-~iaiiTNI~~dHld~~~--s~e~i~~~K~~i~~~l~~ 219 (472)
+.+.. ++.|+-||-..|--+|| +++.+.. .-+++++..
T Consensus 137 ~~~~sG~v~~ladv~vkhA~~lG~~~l~~~~~--~Tver~laD 177 (261)
T TIGR00259 137 KLLGSGEVKILADVVVKHAVHLGNRDLESIVL--DTVERGLAD 177 (261)
T ss_pred HCCCCCCEEEEECCCHHHCCCCCCCCHHHHHH--HHHHHCCCC
T ss_conf 12676645630315245210258836688986--445416988
No 460
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=31.46 E-value=33 Score=13.99 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=7.6
Q ss_pred HHHHHCCCCHHHHHHHHCC
Q ss_conf 6765101210345543114
Q gi|254781101|r 302 IVSILTADVDTAIKALSVF 320 (472)
Q Consensus 302 ~~~~lGi~~~~i~~~L~~~ 320 (472)
++..+|+++.+|++-|+.|
T Consensus 38 La~~~gi~~~qVRKDls~f 56 (211)
T PRK05472 38 LAEAVGVDSAQIRKDLSYF 56 (211)
T ss_pred HHHHHCCCHHHHHHHHHHH
T ss_conf 9999698999999899986
No 461
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=31.44 E-value=23 Score=15.06 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|-| ||||+-.++.-++.
T Consensus 26 ~~Ge~~~iiG~nGaGKSTLl~~l~gl~~ 53 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7998999999999719999999965888
No 462
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=31.35 E-value=23 Score=14.98 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=19.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++||.|-| ||||.-.++.-++.
T Consensus 23 ~~Ge~~~liG~nGsGKTTLl~~i~G~~~ 50 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6997999998999889999999957989
No 463
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=31.27 E-value=21 Score=15.24 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=20.7
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.++||-|-| ||||+-.++.-++..
T Consensus 31 ~~Ge~~~ilGpnGsGKSTLl~~i~G~~~~ 59 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEG 59 (226)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 18809999989996099999999678978
No 464
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=31.10 E-value=23 Score=15.04 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
..+.++||-|-| ||||+-.++.-++.
T Consensus 29 ~~Gei~~liGpnGaGKSTL~~~i~Gl~~ 56 (255)
T PRK11300 29 REQEVVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9997999998999649999999967988
No 465
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=31.05 E-value=29 Score=14.34 Aligned_cols=37 Identities=11% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 311331000256-532101257778741110268713885
Q gi|254781101|r 337 GFFTLIDESYNA-NPASMKAAISVLSQISPHGEGRRIAVL 375 (472)
Q Consensus 337 ~~~~iIDDsYNA-nP~S~~aal~~l~~~~~~~~~r~i~Vl 375 (472)
..+.+.|.-.++ +|.+.+...+.++.+..+ ++-+++.
T Consensus 123 P~lllLDEPtsgLD~~~~~~i~~~i~~l~~~--g~tiiii 160 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLII 160 (200)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 9999996962269999999999999999857--9999999
No 466
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=30.93 E-value=27 Score=14.58 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=19.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++..|||+|.+ ||||...+|..++.
T Consensus 27 ~~G~~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6999999999999989999999823861
No 467
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=30.88 E-value=27 Score=14.58 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred CHHHHHC--C----CC--CCCCCC---CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHCC
Q ss_conf 1444301--5----66--443321---1212232322025553121012344457888865433103-762210121013
Q gi|254781101|r 160 VDFGIFE--L----GM--SHLGEI---RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-GLEKTGTIFLNY 227 (472)
Q Consensus 160 ~~~~V~E--~----g~--~~~gei---~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~-~l~~~g~~ViN~ 227 (472)
.+++|+| + |+ +..+|+ ...+++++-=|..+-|... | -+|--+++.=-. .|+ +++-.|+ |+|.
T Consensus 80 s~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~PvvLv~n~~~--L--~~saaAiv~Gy~-~fdp~V~l~GV-ILN~ 153 (464)
T TIGR00379 80 SDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDAPVVLVVNAKR--L--SRSAAAIVLGYR-SFDPDVKLKGV-ILNR 153 (464)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCH--H--HHHHHHHHHHHH-HCCCCCEEEEE-EEEE
T ss_conf 9657972741343676887768775188999986598899995640--3--357867764134-30898317878-8731
Q ss_pred --CCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf --4246899875201233-3332222222222222344211346510012456543221222222223333221035676
Q gi|254781101|r 228 --DDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 (472)
Q Consensus 228 --Dd~~~~~l~~~~~~~~-~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~ 304 (472)
.+.+...++..-.... ...|+.+= -.+.|+.+. ....-..-+.+. . +-......--++-+.
T Consensus 154 V~~~rH~~k~k~A~e~L~Pgi~vlG~~-pR~~~l~~p-----~RHLGLVpa~E~--l--------~~~~~~~~~~la~~~ 217 (464)
T TIGR00379 154 VGSERHLEKLKTAVEKLAPGIEVLGVI-PRKEDLKVP-----DRHLGLVPAVER--L--------DEIIQQILDWLAEVV 217 (464)
T ss_pred ECCHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCC-----CCCCCCCCCCCC--C--------CHHHHHHHHHHHHHH
T ss_conf 077446899999988636894588777-367532147-----754653166135--3--------178999999999999
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCC--EEE-EEECC
Q ss_conf 5101210345543114766443310100036531--133-10002
Q gi|254781101|r 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTL-IDESY 346 (472)
Q Consensus 305 ~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~--~~i-IDDsY 346 (472)
+--+|+++|.+-+++-...++-++.+....+.+. +-| +|.++
T Consensus 218 e~~lD~~kl~~i~~~~~~~~~~~~~~~~~~~~~~~kiava~D~aF 262 (464)
T TIGR00379 218 EKYLDLDKLLEIAEKARELDSEMELLWEDENKKYVKIAVARDQAF 262 (464)
T ss_pred HHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 974497798887406787777521012345677237899973321
No 468
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=30.82 E-value=34 Score=13.92 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=12.0
Q ss_pred HHHHHHHHHCC-CCCEEEEECC
Q ss_conf 99999998306-9939998303
Q gi|254781101|r 96 NKLAVAARLRS-KATIIAITGS 116 (472)
Q Consensus 96 ~~la~~~~~~~-~~~vI~ITGT 116 (472)
..|-+..+.++ +...+||.|-
T Consensus 18 a~LikaLk~~~~~~efvGvgG~ 39 (381)
T COG0763 18 AGLIKALKARYPDVEFVGVGGE 39 (381)
T ss_pred HHHHHHHHHHCCCEEEEEECCH
T ss_conf 9999999863898389981767
No 469
>PRK13973 thymidylate kinase; Provisional
Probab=30.64 E-value=34 Score=13.90 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=23.0
Q ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHHC
Q ss_conf 9939998303--6542012334677775201
Q gi|254781101|r 107 KATIIAITGS--VGKTTTKEMLTIALSSIKK 135 (472)
Q Consensus 107 ~~~vI~ITGT--nGKTTt~~~l~~iL~~~~~ 135 (472)
+++.|.+-|. .||||-..+|+.-|...|.
T Consensus 2 kG~fIv~EGiDGsGKsTq~~~L~~~L~~~g~ 32 (216)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGY 32 (216)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8249998899999899999999999997799
No 470
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.62 E-value=34 Score=13.90 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=31.5
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 113310002565321012577787411102687138851235417105899999999998649989999880
Q gi|254781101|r 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 (472)
Q Consensus 338 ~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~ 409 (472)
.+.|+||== .+-.++..|.+.|+. .+. ++|.+...= |-.+..- .+.+...+++.|+..-.
T Consensus 219 ~vIIVDDiI-dTGgTl~~aa~~Lk~---~GA-~~V~~~~TH---gvfs~~A----~~rl~~s~i~~ivvTdT 278 (321)
T PRK02269 219 KCILIDDMI-DTAGTICHAADALAE---AGA-TAVYASCTH---PVLSGPA----LDNIQKSAIEKLIVLDT 278 (321)
T ss_pred EEEEECCHH-HCHHHHHHHHHHHHH---CCC-CEEEEEEEC---CCCCHHH----HHHHHCCCCCEEEEECC
T ss_conf 699966243-142669999999984---899-827999978---0278479----99986089988998089
No 471
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=30.58 E-value=24 Score=14.90 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCEEEEEECC-----CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 3113310002-----56532101257778741110268713885123541710589999999999864998999988038
Q gi|254781101|r 337 GFFTLIDESY-----NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 (472)
Q Consensus 337 ~~~~iIDDsY-----NAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~ 411 (472)
..+.|||-+| ++||.+. ..|++......+..|=.+.|.=. +.|.-.+--.+=++.+.. +-|..++..-..
T Consensus 735 rK~~~iDEAW~Ll~~g~~~~~~-~FIE~gyRr~RK~~Ga~~tiTQ~---~~D~~~dka~~~arA~ya-NS~~~iiL~Q~~ 809 (900)
T TIGR02746 735 RKILIIDEAWSLLDDGANPQAA-NFIETGYRRARKYGGAFITITQG---IEDFYSDKASPEARAAYA-NSDWKIILRQSA 809 (900)
T ss_pred CEEEEEHHHHHHHHCCCCCHHH-HHHHHHHHCCHHHCCCEEEEECC---EEHHHCCCCCHHHHHHHH-CCCEEEEECCCH
T ss_conf 5167644248987427851358-98887632011116436899644---001000347988999884-533004127886
Q ss_pred HHHHHHC
Q ss_conf 9899851
Q gi|254781101|r 412 LALKDAL 418 (472)
Q Consensus 412 ~~~~~~~ 418 (472)
+.+.+..
T Consensus 810 ~~~~~~~ 816 (900)
T TIGR02746 810 ESIEKLK 816 (900)
T ss_pred HHHHHHH
T ss_conf 4789999
No 472
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=30.52 E-value=12 Score=16.89 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=17.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 939998303654201233467777520
Q gi|254781101|r 108 ATIIAITGSVGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 108 ~~vI~ITGTnGKTTt~~~l~~iL~~~~ 134 (472)
.-.||=||| |||-...-|+.+|.-.+
T Consensus 112 ILliGPTG~-GKTlla~tLAk~l~vPF 137 (411)
T PRK05342 112 ILLIGPTGS-GKTLLAQTLARILNVPF 137 (411)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHCCCE
T ss_conf 899899997-78899999999869998
No 473
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=30.44 E-value=34 Score=13.91 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=15.6
Q ss_pred CEEEEECC--CCCCHHHHHHHHHHHH
Q ss_conf 39998303--6542012334677775
Q gi|254781101|r 109 TIIAITGS--VGKTTTKEMLTIALSS 132 (472)
Q Consensus 109 ~vI~ITGT--nGKTTt~~~l~~iL~~ 132 (472)
||+-|||- .|||| ++.++|+.
T Consensus 1 Pv~iitGFLGsGKTT---ll~~ll~~ 23 (174)
T pfam02492 1 PVTVLTGFLGSGKTT---LLEHLLRD 23 (174)
T ss_pred CEEEEECCCCCCHHH---HHHHHHHH
T ss_conf 969993488788999---99999984
No 474
>PRK10744 phosphate transporter subunit; Provisional
Probab=30.32 E-value=34 Score=13.86 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 699399983036--54201233467777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
.++.++|+-|-| ||||+-.++.-++.
T Consensus 34 ~~Ge~~~liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 34 AKNQVTAFIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8998999999999819999999987651
No 475
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=30.26 E-value=25 Score=14.82 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 699399983036--542012334677775
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIALSS 132 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL~~ 132 (472)
.++.+++|.|-| ||||+-.+++-++..
T Consensus 25 ~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~p 53 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPP 53 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999984699999999759988
No 476
>PRK02224 chromosome segregation protein; Provisional
Probab=30.21 E-value=35 Score=13.85 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHHH
Q ss_conf 699399983036--5420123346777
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLTIAL 130 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~~iL 130 (472)
|+..+.+|+|-| ||||.-+-|.+.|
T Consensus 21 F~~Gi~~I~G~NGsGKSsIldAI~~aL 47 (880)
T PRK02224 21 LEDGVTVIHGLNGSGKSSLLEACFFAL 47 (880)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699858998999998899999999998
No 477
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.21 E-value=25 Score=14.82 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 99399983036--54201233467777
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
++..+||.|.+ ||||...++.-++.
T Consensus 26 ~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999999989999999743854
No 478
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.18 E-value=35 Score=13.85 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCCCHH-HHHHHH------HHCCCEEEEECCCCCCCCCCCCCCEEEECC------HHHHHHHHHHHHHHCC--CCCEEE
Q ss_conf 8874768-889999------986988999855212455446972899599------8999999999998306--993999
Q gi|254781101|r 48 GPHYDGH-DFILHA------VQKGAGLVVVNTDMVASIGSLSIPVFGVDD------VLGALNKLAVAARLRS--KATIIA 112 (472)
Q Consensus 48 g~~~DGh-~~i~~A------~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d------~~~al~~la~~~~~~~--~~~vI~ 112 (472)
|.+|.|| +|+.+. ...-....++............+|.-.|.+ ..+.+..+....+..+ +-|.||
T Consensus 132 G~~f~GHTE~LA~l~g~~~~~~~~~vMml~~~~LrV~l~TtHIpLk~V~~~It~~~I~~~i~l~~~~L~~~fgi~~PrIa 211 (336)
T PRK05312 132 GFAFPGHTEFLAELAGVALGKPVQPVMMLAGPQLRVVPVTIHIPLRDVPAALTTELIVATARITAADLRRRFGIAAPRLA 211 (336)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 78889869999998554446777426886158736888533505999976544899999999999999985498887289
Q ss_pred EECCC
Q ss_conf 83036
Q gi|254781101|r 113 ITGSV 117 (472)
Q Consensus 113 ITGTn 117 (472)
|+|=|
T Consensus 212 V~GLN 216 (336)
T PRK05312 212 VAGLN 216 (336)
T ss_pred EEEEC
T ss_conf 99708
No 479
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=30.16 E-value=23 Score=14.97 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 99399983036--54201233467777
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
++..++|+|.| ||||.-.++.-++.
T Consensus 26 ~Ge~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999995899988999999869876
No 480
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=30.12 E-value=26 Score=14.70 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCC--CCHHHHHHHHHHH
Q ss_conf 6993999830365--4201233467777
Q gi|254781101|r 106 SKATIIAITGSVG--KTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTnG--KTTt~~~l~~iL~ 131 (472)
.++.++||.|-|| |||.-.++.-++.
T Consensus 35 ~~Ge~~~liG~NGaGKSTLl~~l~gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999809999999956889
No 481
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=30.09 E-value=35 Score=13.84 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHH--HCCCEEEEECCCCC-----------------CCCCCCCC
Q ss_conf 871474677402223789888971688747688899999--86988999855212-----------------45544697
Q gi|254781101|r 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV--QKGAGLVVVNTDMV-----------------ASIGSLSI 83 (472)
Q Consensus 23 ~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~--~~Ga~~~i~~~~~~-----------------~~~~~~~~ 83 (472)
++..|.|+.+=-+-+.+.-+.|+|...+-+.-.-+..|+ ..+....++...|+ ......++
T Consensus 191 a~eIi~Gi~Il~~~l~~~~~iIgIEdNKPeAI~al~~a~~~~~~i~V~~lptkYPqGgEKqLI~~lTGreVP~G~lPadv 270 (725)
T PRK05035 191 ADEILEGIRILAHILQPKEVLIGIEDNKPEAIAALRAALAGADDIRVRVIPTKYPSGGEKQLIQILTGKEVPSGGRPADI 270 (725)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999998399879999838989999999997466998599981787999489999999949746899987656
Q ss_pred CEEEECCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH
Q ss_conf 2899599899999999999830699-39998303654201233467777520112221221101457410
Q gi|254781101|r 84 PVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 (472)
Q Consensus 84 ~~i~v~d~~~al~~la~~~~~~~~~-~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt 152 (472)
-++ |.|+-.++.-.-.....++-. +||-|||.. +..+|||.-.||.|++
T Consensus 271 Gvv-v~NVgTa~AI~~Av~~G~PLieRvVTVTG~a-------------------v~~P~N~~v~iGTPv~ 320 (725)
T PRK05035 271 GVL-MQNVGTAYAIKRAVIDGEPLIERVVTLTGEA-------------------VARPGNVWARLGTPVR 320 (725)
T ss_pred CEE-EECHHHHHHHHHHHHCCCCEEEEEEEEECCC-------------------CCCCCEEEEECCCCHH
T ss_conf 659-8668999999999974997468999974675-------------------4899728997999599
No 482
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=30.01 E-value=32 Score=14.04 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=0.0
Q ss_pred CCCCEEEEECCC--CCCHHHHHHH
Q ss_conf 699399983036--5420123346
Q gi|254781101|r 106 SKATIIAITGSV--GKTTTKEMLT 127 (472)
Q Consensus 106 ~~~~vI~ITGTn--GKTTt~~~l~ 127 (472)
.++.++|+.|.| ||||...++.
T Consensus 28 ~~Ge~~~lvG~nGaGKSTL~~~l~ 51 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILS 51 (501)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 898199998999981999999984
No 483
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=29.91 E-value=26 Score=14.70 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCC--CCHHHHHHHHHHH
Q ss_conf 6993999830365--4201233467777
Q gi|254781101|r 106 SKATIIAITGSVG--KTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTnG--KTTt~~~l~~iL~ 131 (472)
.++.++|+-|-|| |||+-.++.-+++
T Consensus 24 ~~Gei~~llGpNGAGKSTll~~i~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9995999999999619999999977999
No 484
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=29.90 E-value=26 Score=14.67 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCC--CCHHHHHHHHHHH
Q ss_conf 6993999830365--4201233467777
Q gi|254781101|r 106 SKATIIAITGSVG--KTTTKEMLTIALS 131 (472)
Q Consensus 106 ~~~~vI~ITGTnG--KTTt~~~l~~iL~ 131 (472)
.++.++||-|-|| |||.-.++.-+..
T Consensus 29 ~~Gei~~iiG~sGsGKSTLl~~i~gl~~ 56 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7997999998999819999999965999
No 485
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=29.83 E-value=25 Score=14.73 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 99399983036--54201233467777
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
++.++|+.|-| ||||.-.++.-++.
T Consensus 29 ~Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 997999998999889999999966888
No 486
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=29.74 E-value=26 Score=14.72 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=0.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 99399983036--54201233467777
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIALS 131 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL~ 131 (472)
++.++||.|-| ||||.-.++.-++.
T Consensus 31 ~GEi~~iiG~nGaGKSTLl~~i~G~~~ 57 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 997999988899889999999856788
No 487
>PRK07247 DNA polymerase III subunit epsilon; Validated
Probab=29.68 E-value=34 Score=13.88 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHCCCC---CCCCCCCCCCCCCCCCEEE------EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHH
Q ss_conf 301566---4433211212232322025------5531210123444578888654331037622101210134246899
Q gi|254781101|r 164 IFELGM---SHLGEIRFLTHLVRPHIAV------ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 (472)
Q Consensus 164 V~E~g~---~~~gei~~L~~i~~P~iai------iTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~ 234 (472)
|+|+|+ .....++....+++|..-| +|+|+.+.+..=.+++++..+-.+.+...+--+.-+.+.|-++...
T Consensus 23 IIEIgAVk~~~g~ivd~F~slVnP~~~I~~~i~~lTGIt~~~v~~aP~~~eVl~~f~~Figd~~lVaHNa~~FD~~fL~~ 102 (195)
T PRK07247 23 IIQVSAVKYDHHKEVDSFDTYVYTDVPLQSFINGLTGITADKIAAAPKVEEVLAAFKNFVGELPLIGYNAQKSDLPILAE 102 (195)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
T ss_conf 69999999989989999983566989999555413598999983599999999999999689918990884514999999
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 87520123333322
Q gi|254781101|r 235 LKAKSHALGIKTIY 248 (472)
Q Consensus 235 l~~~~~~~~~~~i~ 248 (472)
.............+
T Consensus 103 ~~~~~~~~~~~~~~ 116 (195)
T PRK07247 103 NGLDLRDQYQVDLF 116 (195)
T ss_pred HHHHHCCCCCCCHH
T ss_conf 87741577668569
No 488
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=29.67 E-value=35 Score=13.79 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8999999998447898999977132548999999998
Q gi|254781101|r 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472)
Q Consensus 430 ~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472)
+.+-.+.+.+.+..|..|+|+||+.|. .-|.+.|.+
T Consensus 231 l~~~~~~v~~~l~~ga~iyVCGs~~Ma-~~V~~aL~~ 266 (289)
T cd06201 231 LRADAERLRRLIEDGAQIMVCGSRAMA-QGVAAVLEE 266 (289)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHHHHHH
T ss_conf 999899999999889899994896089-999999999
No 489
>pfam00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disea
Probab=29.58 E-value=35 Score=13.78 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 012103455431147664433101000365311331000256532101257778741110268713
Q gi|254781101|r 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 (472)
Q Consensus 307 Gi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i 372 (472)
.++.+++.+-++.|.++..-.-...-.....+.-+|. | .++++...|++.+... .-.||+|
T Consensus 9 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~--f-~~~~~A~~Ai~~lng~--~~~gr~i 69 (70)
T pfam00076 9 DTTEEDLKDLFSKFGPIESIKIVRDETGRSKGFAFVE--F-EDEEDAEKALEALNGK--ELGGREL 69 (70)
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEE--E-CCHHHHHHHHHHHCCC--EECCCCC
T ss_conf 5889999999998398142422223578878977999--8-8999999999985999--8396099
No 490
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=29.55 E-value=35 Score=13.78 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=0.0
Q ss_pred CCCEEEEECCC--CCCHHHHH--HHHHHHHHH
Q ss_conf 99399983036--54201233--467777520
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEM--LTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~--l~~iL~~~~ 134 (472)
..+++=|||.| ||||.-.. +..+|.+.|
T Consensus 28 ~~~~~iITGpN~gGKSt~Lktigl~~ilAq~G 59 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIG 59 (204)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 72599998999887199999999999999968
No 491
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=29.52 E-value=35 Score=13.78 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCC--CCHHHHHHHHHH
Q ss_conf 6993999830365--420123346777
Q gi|254781101|r 106 SKATIIAITGSVG--KTTTKEMLTIAL 130 (472)
Q Consensus 106 ~~~~vI~ITGTnG--KTTt~~~l~~iL 130 (472)
.++.++||.|-|| ||| ++..+|
T Consensus 28 ~~G~~~~iiGPNGaGKST---LlK~iL 51 (254)
T COG1121 28 EKGEITALIGPNGAGKST---LLKAIL 51 (254)
T ss_pred CCCCEEEEECCCCCCHHH---HHHHHH
T ss_conf 489689999998888899---999996
No 492
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=29.50 E-value=25 Score=14.75 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9939998303654201233467777520
Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIK 134 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~ 134 (472)
++-|-|-||| |||-|-..++.-|+..|
T Consensus 23 HGLiaGATGT-GKTvTLq~lAE~~S~~G 49 (504)
T pfam05872 23 HGLIAGATGT-GKTVTLQVLAESFSDAG 49 (504)
T ss_pred CCEECCCCCC-CHHHHHHHHHHHHHHCC
T ss_conf 1662265778-61789999999874549
No 493
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=29.48 E-value=36 Score=13.77 Aligned_cols=54 Identities=22% Similarity=0.142 Sum_probs=0.0
Q ss_pred HH------HHHHHHHHCCCEEEEECCC---------CCCCCCCCCCCEEEECC--HHHHHHHHHHHHHHCCC
Q ss_conf 68------8899999869889998552---------12455446972899599--89999999999983069
Q gi|254781101|r 53 GH------DFILHAVQKGAGLVVVNTD---------MVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSK 107 (472)
Q Consensus 53 Gh------~~i~~A~~~Ga~~~i~~~~---------~~~~~~~~~~~~i~v~d--~~~al~~la~~~~~~~~ 107 (472)
|| ++|+.|.+.|...+++++. |.-.-.-...=+|-.+| |..||.+| .|.+.+++
T Consensus 320 GHvs~~~ip~i~ra~d~Gv~V~MTSQClyGRVNlnVY~TGR~Ll~aGVIp~EDMlPEvAyVKL-MWvLg~~~ 390 (413)
T TIGR02153 320 GHVSEDWIPSIKRATDDGVPVVMTSQCLYGRVNLNVYSTGRELLKAGVIPGEDMLPEVAYVKL-MWVLGQTD 390 (413)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEEEECCEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHH-HHHHCCCC
T ss_conf 555235899999987589689996114335050753433489997587278888769999999-99746898
No 494
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.47 E-value=36 Score=13.77 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 33221035676510121034554311476644331010003653113310002565321012577787411102687138
Q gi|254781101|r 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472)
Q Consensus 294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472)
.|-..|-.+|..||+++-.+. +..|.--+-..+..+-..+ ..+.++..++..| +.+...|-.+..++.....|.++
T Consensus 7 s~~~La~~ia~~Lg~~l~~~~--~~~F~DGE~~v~i~~~vrg-~dV~i~~~~~~~n-d~lmELll~i~A~r~a~A~~It~ 82 (286)
T PRK00934 7 GSQNLAAEVAKLLNSELARVE--TKKFPDGELYVRVDEELGG-EDIVIISTQYPQD-ENLIELILLLDALRDEGVKSITL 82 (286)
T ss_pred CCHHHHHHHHHHHCCCCEEEE--EEECCCCCEEEEECCCCCC-CEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 989999999998699714128--8988999889986887799-8699991899984-79999999999998758973899
Q ss_pred EECCHHHCCCCHHHH------HHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEE
Q ss_conf 851235417105899------99999999864998999988038989985113797999789899999999844789899
Q gi|254781101|r 374 VLGDMCEMGELSQSF------HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 (472)
Q Consensus 374 VlG~m~ELG~~~~~~------h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiV 447 (472)
|+.-|.-.-.+.... -+-+++.+... +|.|+++.-+...+...+ ..++........+.++++. ..++.+
T Consensus 83 ViPY~~YsRQDr~~~~ge~isak~va~ll~~~-~d~vitvDlH~~~i~~fF--~~p~~nl~~~~~~~~~~~~--~~~~~v 157 (286)
T PRK00934 83 VAPYLAYARQDRRFKEGEPISIKALAKVYSSY-YDEIITINIHEEHTLEFF--DIPFTNLSAMPAIAEYIKE--KLVDPL 157 (286)
T ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEECCHHHHHHCC--CCCCCCCCCCHHHHHHHHH--HCCCCE
T ss_conf 83465533464346899865089999999753-174699947887884046--8983111057145899984--388878
Q ss_pred EE---ECCCHHHHHHHHHHH
Q ss_conf 99---771325489999999
Q gi|254781101|r 448 VV---KSSNSCGFYRLINLL 464 (472)
Q Consensus 448 Li---KGSr~~~le~iv~~L 464 (472)
++ .|+.. +-+.+.+.|
T Consensus 158 VVsPD~G~~~-ra~~~a~~L 176 (286)
T PRK00934 158 VLAPDKGALE-RAKEVAEIL 176 (286)
T ss_pred EECCCCCHHH-HHHHHHHHH
T ss_conf 9847974899-999999975
No 495
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=29.29 E-value=36 Score=13.75 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred CEEEECCHHHCCCCHHHH--HHHHHHHHHHCCCCEEEEE-------------CCCHHHHHHHCCCCCCEEEECCHHHHHH
Q ss_conf 138851235417105899--9999999986499899998-------------8038989985113797999789899999
Q gi|254781101|r 371 RIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS-------------GFHVLALKDALPRSIHVHYSETMDGLFL 435 (472)
Q Consensus 371 ~i~VlG~m~ELG~~~~~~--h~~i~~~~~~~~~d~v~~~-------------G~~~~~~~~~~~~~~~~~~~~~~e~a~~ 435 (472)
|++|++ |...+-. |..|.+.+.+. +|.|+.. .+..+-+.+++....++....--.-.++
T Consensus 2 riai~p-----GSFDPit~GHldii~ra~~l-fD~viv~v~~Np~K~~~f~~eeR~~mi~~~~~~~~nv~V~~~~gL~vd 75 (159)
T PRK00168 2 KIAIYP-----GSFDPITNGHLDIIERASKL-FDEVIVAVAINPSKKPLFSLEERVELIREVTAHLPNVEVVGFDGLLVD 75 (159)
T ss_pred CEEEEC-----CCCCCCCHHHHHHHHHHHHH-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 489947-----26798844799999999986-799999405698877778999999999998515899799943650323
Q ss_pred HHHHHCCCCCEEEEECCCHH
Q ss_conf 99984478989999771325
Q gi|254781101|r 436 FIQSSLVDGDVVVVKSSNSC 455 (472)
Q Consensus 436 ~l~~~~~~gdiVLiKGSr~~ 455 (472)
++++. |..++++|-|..
T Consensus 76 ~ak~~---~a~~iiRGlR~~ 92 (159)
T PRK00168 76 FAREV---GATVIVRGLRAV 92 (159)
T ss_pred HHHHC---CCEEEEEECCCC
T ss_conf 57766---984999605640
No 496
>PRK06031 phosphoribosyltransferase; Provisional
Probab=29.22 E-value=36 Score=13.74 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHCCCC-------------HHHHHHHHCCCCCCCCCCCCEE------CCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 221035676510121-------------0345543114766443310100------036531133100025653210125
Q gi|254781101|r 296 MLMTLGIVSILTADV-------------DTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAA 356 (472)
Q Consensus 296 alaAia~~~~lGi~~-------------~~i~~~L~~~~~~~GR~~~~~~------~~~~~~~~iIDDsYNAnP~S~~aa 356 (472)
+..|.++++.+|.+. ++....++++.. |+-..|+.+ ......+.+|||.- ++-.|+.++
T Consensus 96 l~lA~~Var~LG~~rYVplg~SrKfwy~d~Ls~~vsSITt-p~~~krlylDp~~lpLl~GrRV~lVDDVI-SSG~Si~a~ 173 (233)
T PRK06031 96 LTLAAAVARKLGHTRYVPLGTSRKFWYDDELSVPLSSITT-PDQGKRLYIDPRMLPLLRGRRVALIDDVI-SSGASIVAA 173 (233)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCEECCCC-CCCCCEEEECHHHHHHHCCCEEEEEECHH-CCCHHHHHH
T ss_conf 0458999997097636765647753313443551000358-88773156774441243287799982122-155659999
Q ss_pred HHHHHHHHHCCCCCCEEEEC-CHHHCCCCHHHHHHHHHH
Q ss_conf 77787411102687138851-235417105899999999
Q gi|254781101|r 357 ISVLSQISPHGEGRRIAVLG-DMCEMGELSQSFHIDLAE 394 (472)
Q Consensus 357 l~~l~~~~~~~~~r~i~VlG-~m~ELG~~~~~~h~~i~~ 394 (472)
|+.|...-.+ ++.+| .|.| ++.++..+..
T Consensus 174 l~LL~~~G~e-----~v~igvaM~Q----~erWre~l~a 203 (233)
T PRK06031 174 LRLLATCGIE-----PAGIGAAMLQ----SERWRESLAA 203 (233)
T ss_pred HHHHHHCCCC-----EEEEEEEEHH----HHHHHHHHHH
T ss_conf 9999975997-----3788763214----4567787751
No 497
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=29.10 E-value=36 Score=13.73 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHH
Q ss_conf 99399983036--5420123346777
Q gi|254781101|r 107 KATIIAITGSV--GKTTTKEMLTIAL 130 (472)
Q Consensus 107 ~~~vI~ITGTn--GKTTt~~~l~~iL 130 (472)
+.+++-|||.| ||||.-..++...
T Consensus 28 ~~~~~iiTGpN~sGKSt~lkti~l~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98289998998875399999999999
No 498
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=29.08 E-value=36 Score=13.73 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHC
Q ss_conf 22378988897168874768889999986988999855212455446972899599899999999999830
Q gi|254781101|r 35 RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 (472)
Q Consensus 35 r~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~ 105 (472)
|+.-+.++.+--+|-+..|.. ..+|+++||..+|+ ..|+..-+||.++..++-+....+
T Consensus 157 r~~~~~~~~ivtPGI~~~~~~-~~~ai~~Gad~iVV-----------GR~It~A~dP~~aa~~i~~~i~g~ 215 (215)
T PRK13813 157 RRRLGDDLKIISPGIGAQGGK-ASDAIKAGADYVIV-----------GRSIYNAADPREAAKKIREEILGK 215 (215)
T ss_pred HHHCCCCCEEECCCCCCCCCC-HHHHHHHCCCEEEE-----------CCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 986288746985761679999-89999818999998-----------943358999999999999986799
No 499
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=29.01 E-value=27 Score=14.57 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCEEEEECCCC--CCHHHHHHHHHHHHHHCCCC
Q ss_conf 993999830365--42012334677775201122
Q gi|254781101|r 107 KATIIAITGSVG--KTTTKEMLTIALSSIKKTYA 138 (472)
Q Consensus 107 ~~~vI~ITGTnG--KTTt~~~l~~iL~~~~~~~~ 138 (472)
.+.++||-|-+| |||+...+.-+|...+++..
T Consensus 32 ~GEilgivGeSGsGKSTl~~~ilgll~~~~~~~~ 65 (327)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMA 65 (327)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 9999999999987899999999748898997654
No 500
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.97 E-value=36 Score=13.71 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECC--CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf 2237898889716--8874768889999986988999855212455446972899599899999
Q gi|254781101|r 35 RSIAPQEAFFAIK--GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96 (472)
Q Consensus 35 r~v~~g~lFval~--g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~ 96 (472)
+.+.|+|++|++- |...+=.+.++.|.++||..+.+......+.....--.+.+......+.
T Consensus 175 ~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD~~L~~~~~e~~~~ 238 (282)
T PRK11557 175 QALSPDDLLLAISYSGERRELNLAADEALRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATR 238 (282)
T ss_pred HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEEECCCCCCCC
T ss_conf 8189999899985999978999999999987993999729899815886999998478531013
Done!