HHsearch results for GI: 254781101 and protein with PDBid: 1e8c_A
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=587.64 Aligned_cols=430 Identities=18% Similarity=0.190 Sum_probs=344.4
Q ss_pred CHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC----CCCC
Q ss_conf 678899872799952688714746774022237898889716887476888999998698899985521245----5446
Q gi|254781101|r 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSL 81 (472)
Q Consensus 6 ~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~----~~~~ 81 (472)
+|+||+.. |..+.++..|++|++|||+|+||++||||+|+++|||+|+++|+++||+++|++++.... ....
T Consensus 4 ~l~~ll~~----~~~~~~~~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~vv~~~~~~~~~~~~~~~~ 79 (498)
T 1e8c_A 4 NLRDLLAP----WVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMH 79 (498)
T ss_dssp BHHHHHTT----TCTTCCCCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEEET
T ss_pred CHHHHHHH----HCCCCCCCEECCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCC
T ss_conf 78999677----52899887379278506758999789990468888899999999879969998075334541010037
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC---------
Q ss_conf 972899599899999999999830--699399983036542012334677775201122212211014574---------
Q gi|254781101|r 82 SIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------- 150 (472)
Q Consensus 82 ~~~~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvp--------- 150 (472)
++|++.|+|++++|++||++++.+ .++++||||||||||||++|++++|+..+.++++.|++++.++.+
T Consensus 80 ~~~~i~V~d~~~aL~~la~~~~~~~~~~~~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (498)
T 1e8c_A 80 GVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTG 159 (498)
T ss_dssp TEEEEEETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSC
T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCCCCCC
T ss_conf 98589989999999999999855733367189997899980006460004554375300025400134752245578787
Q ss_pred -----CHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf -----100012322144430156644332112122323220255531210123444578888654331037622101210
Q gi|254781101|r 151 -----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 (472)
Q Consensus 151 -----ltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~Vi 225 (472)
+++++...+.++.++|++++++|+|.+++.+++|+++|||||++||+++||++|+|+++|.+++.. .+.+.+|+
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~gs~e~~~~aK~~i~~~-~~~g~~vl 238 (498)
T 1e8c_A 160 SAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 238 (498)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 35678999999885699299990698364556407688888999489778767568836767788886530-36772899
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1342468998752012333332222222---2222223442113465100124565432212222222233332210356
Q gi|254781101|r 226 NYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 (472)
Q Consensus 226 N~Dd~~~~~l~~~~~~~~~~~i~~~g~~---~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~ 302 (472)
|.||++...+..+....... ....+.+ ...++....+........+.+...++..++.++++|.||++|+++|+++
T Consensus 239 n~Dd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hnv~NalaAia~ 317 (498)
T 1e8c_A 239 NADDEVGRRWLAKLPDAVAV-SMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALAT 317 (498)
T ss_dssp ETTSHHHHHHHTTCTTCEEE-ESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHCCCCEEE-EECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 35867887777650462588-63145675433420000246522665201100467643688751273799999999999
Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCC
Q ss_conf 76510121034554311476644331010003653113310002565321012577787411102687138851235417
Q gi|254781101|r 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 (472)
Q Consensus 303 ~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG 382 (472)
+..+|++.+++.+++.+|.+++||++.+.. .++..++|| |||||.||+++++++.... .+|+++|+|.|++.+
T Consensus 318 a~~lg~~~~~i~~~l~~~~~~~gR~e~~~~---~~~~~iidD-y~~np~s~~a~l~~l~~~~---~~rii~v~g~~g~~~ 390 (498)
T 1e8c_A 318 LLALGYPLADLLKTAARLQPVCGRMEVFTA---PGKPTVVVD-YAHTPDALEKALQAARLHC---AGKLWCVFGCGGDRD 390 (498)
T ss_dssp HHHTTCCHHHHHHHGGGCCCCTTSSEEECC---TTSCEEEEE-CCCSHHHHHHHHHHHHHTC---SSCEEEEECCCSSSC
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCEEEEEE---CCCEEEEEE-CCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCC
T ss_conf 976221258999999745898997289993---895499994-2799299999999988656---998899988766665
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE-----CCCHHHHHH----HCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 1058999999999986499899998-----803898998----511379799978989999999984478989999771
Q gi|254781101|r 383 ELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472)
Q Consensus 383 ~~~~~~h~~i~~~~~~~~~d~v~~~-----G~~~~~~~~----~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472)
......+. +.+.. ..|.|++. |+....+.+ ...+..++.++++.++|++.+.+.+++||+||++|-
T Consensus 391 ~~~~~~~~---~~a~~-~~d~vilt~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~d~~eAi~~a~~~a~~gDvVLi~G~ 465 (498)
T 1e8c_A 391 KGKRPLMG---AIAEE-FADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGK 465 (498)
T ss_dssp STHHHHHH---HHHHH-HCSEEEECCSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESC
T ss_pred CCHHHHHH---HHHHH-CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 21558999---99985-59999999878787798999999985676778879968999999999984899899999478