HHsearch results for GI: 254781101 and protein with PDBid: 1gg4_A

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00  E-value=0  Score=713.66  Aligned_cols=447  Identities=30%  Similarity=0.439  Sum_probs=411.4

Q ss_pred             CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf             95435678899872799952688714746774022237898889716887476888999998698899985521245544
Q gi|254781101|r    1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS   80 (472)
Q Consensus         1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~   80 (472)
                      |..| +|++|+++++|++.+.  |..|+++++|||+|+||++|||++|.++|||+|+++|+++||+++|++++.     +
T Consensus         1 m~~~-~l~~l~~~l~~~l~~~--d~~i~~is~DSr~v~~g~lFval~G~~~dG~~fi~~A~~~GA~~ii~~~~~-----~   72 (452)
T 1gg4_A            1 MISV-TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----D   72 (452)
T ss_dssp             CCCE-EHHHHHHHTTEEEESC--CCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCC-----S
T ss_pred             CCCC-CHHHHHHHHCCEEECC--CCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----C
T ss_conf             9777-5999999769998789--825727995478079997899935787788999999998699599986876-----7


Q ss_pred             CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC
Q ss_conf             69728995998999999999998306993999830365420123346777752011222122110145741000123221
Q gi|254781101|r   81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV  160 (472)
Q Consensus        81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~  160 (472)
                      .++|+|.|+|++++|..||+++|.+++.++||||||||||||++|++++|+..|.++++.||+|+++|+|++++.+.+++
T Consensus        73 ~~~p~i~v~d~~~al~~la~~~~~~~~~~vi~ITGT~GKTTt~~~l~~il~~~g~~~~~~~~~~~~ig~~~~~~~~~~~~  152 (452)
T 1gg4_A           73 IDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEY  152 (452)
T ss_dssp             CSSCEEEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHTTCCTTC
T ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf             99999998988999999999987079924699971367404456788777765214302357788737546664302555


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC
Q ss_conf             44430156644332112122323220255531210123444578888654331037622101210134246899875201
Q gi|254781101|r  161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH  240 (472)
Q Consensus       161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~  240 (472)
                      +++|+|+|++++|++.+++..++|+++|||||++||||+|+|+|+|+++|++||+++++++.+|+|.||+.+..+.....
T Consensus       153 ~~~v~E~~~~~~~~~~~~~~~~~pdiaviTNI~~dHld~~~s~e~y~~aK~~lf~~l~~~~~~i~n~Dd~~~~~~~~~~~  232 (452)
T 1gg4_A          153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG  232 (452)
T ss_dssp             SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT
T ss_pred             CEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             72899952886606776624568878999544055415656289999999999854442576323678768889988750


Q ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             2333332222222-222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r  241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV  319 (472)
Q Consensus       241 ~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~  319 (472)
                      .   ..+++|+.. +++|+++.++....++..|.+..+++.+++.++++|+||++|+++|++++..+|++.++|.++|.+
T Consensus       233 ~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~f~l~~~~~~~~~~~~l~G~hnv~NalaAia~~~~lg~~~~~i~~~l~~  309 (452)
T 1gg4_A          233 S---RKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLAN  309 (452)
T ss_dssp             T---SEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred             C---CCCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             4---6631544666577567774377079718999954614899972577321140899986665549989999999874


Q ss_pred             CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r  320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY  399 (472)
Q Consensus       320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~  399 (472)
                      |++++||++...   ..++.++|||+||+||+||+++|+++++++    +||++|+|+|.|+|+++...|+++++.+.+.
T Consensus       310 ~~~v~~R~~~~~---~~~~~~~idD~y~~np~s~~a~l~~l~~~~----~~ki~i~g~~~elG~~~~~~~~~i~~~~~~~  382 (452)
T 1gg4_A          310 LKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAA  382 (452)
T ss_dssp             CCCCTTSSEEEE---EETTEEEEECCSCCCHHHHHHHHHHHHHSS----SEEEEEECCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHEEEE---ECCCCEEEEECCCCCHHHHHHHHHHHHHCC----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             459983115898---428957998247689799999999998668----9839999976878864799999999999857


Q ss_pred             CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHHHHHHC
Q ss_conf             9989999880389899851137979997898999999998447898--99997713254899999999850
Q gi|254781101|r  400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEF  468 (472)
Q Consensus       400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gd--iVLiKGSr~~~le~iv~~L~~~~  468 (472)
                      ++|.|+++|+..+.+.+...   ...++++.++++..+.+.+.++|  +||+||||+++||+++++|+|.+
T Consensus       383 ~~d~vi~~G~~~~~i~~~~~---~~~~~~~~~~~i~~l~~~~~~~d~~~iL~KGSr~~~le~~v~~L~~~~  450 (452)
T 1gg4_A          383 GIDRVLSVGKQSHAISTASG---VGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG  450 (452)
T ss_dssp             TCSEEEEESSSTHHHHHHTT---SCEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHHC---
T ss_pred             CCCEEEEECCCHHHHHHHCC---CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf             99999997828899986478---870638999999999985336995699991418515999999998628