HHsearch results for GI: 254781101 and protein with PDBid: 1gg4_A
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=713.66 Aligned_cols=447 Identities=30% Similarity=0.439 Sum_probs=411.4
Q ss_pred CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 95435678899872799952688714746774022237898889716887476888999998698899985521245544
Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472)
Q Consensus 1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472)
|..| +|++|+++++|++.+. |..|+++++|||+|+||++|||++|.++|||+|+++|+++||+++|++++. +
T Consensus 1 m~~~-~l~~l~~~l~~~l~~~--d~~i~~is~DSr~v~~g~lFval~G~~~dG~~fi~~A~~~GA~~ii~~~~~-----~ 72 (452)
T 1gg4_A 1 MISV-TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----D 72 (452)
T ss_dssp CCCE-EHHHHHHHTTEEEESC--CCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCC-----S
T ss_pred CCCC-CHHHHHHHHCCEEECC--CCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----C
T ss_conf 9777-5999999769998789--825727995478079997899935787788999999998699599986876-----7
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC
Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221
Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472)
Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472)
.++|+|.|+|++++|..||+++|.+++.++||||||||||||++|++++|+..|.++++.||+|+++|+|++++.+.+++
T Consensus 73 ~~~p~i~v~d~~~al~~la~~~~~~~~~~vi~ITGT~GKTTt~~~l~~il~~~g~~~~~~~~~~~~ig~~~~~~~~~~~~ 152 (452)
T 1gg4_A 73 IDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEY 152 (452)
T ss_dssp CSSCEEEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHTTCCTTC
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 99999998988999999999987079924699971367404456788777765214302357788737546664302555
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC
Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201
Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472)
Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472)
+++|+|+|++++|++.+++..++|+++|||||++||||+|+|+|+|+++|++||+++++++.+|+|.||+.+..+.....
T Consensus 153 ~~~v~E~~~~~~~~~~~~~~~~~pdiaviTNI~~dHld~~~s~e~y~~aK~~lf~~l~~~~~~i~n~Dd~~~~~~~~~~~ 232 (452)
T 1gg4_A 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 (452)
T ss_dssp SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 72899952886606776624568878999544055415656289999999999854442576323678768889988750
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 2333332222222-222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472)
Q Consensus 241 ~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472)
. ..+++|+.. +++|+++.++....++..|.+..+++.+++.++++|+||++|+++|++++..+|++.++|.++|.+
T Consensus 233 ~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~f~l~~~~~~~~~~~~l~G~hnv~NalaAia~~~~lg~~~~~i~~~l~~ 309 (452)
T 1gg4_A 233 S---RKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLAN 309 (452)
T ss_dssp T---SEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred C---CCCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 4---6631544666577567774377079718999954614899972577321140899986665549989999999874
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472)
Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472)
|++++||++... ..++.++|||+||+||+||+++|+++++++ +||++|+|+|.|+|+++...|+++++.+.+.
T Consensus 310 ~~~v~~R~~~~~---~~~~~~~idD~y~~np~s~~a~l~~l~~~~----~~ki~i~g~~~elG~~~~~~~~~i~~~~~~~ 382 (452)
T 1gg4_A 310 LKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAA 382 (452)
T ss_dssp CCCCTTSSEEEE---EETTEEEEECCSCCCHHHHHHHHHHHHHSS----SEEEEEECCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHEEEE---ECCCCEEEEECCCCCHHHHHHHHHHHHHCC----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 459983115898---428957998247689799999999998668----9839999976878864799999999999857
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 9989999880389899851137979997898999999998447898--99997713254899999999850
Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gd--iVLiKGSr~~~le~iv~~L~~~~ 468 (472)
++|.|+++|+..+.+.+... ...++++.++++..+.+.+.++| +||+||||+++||+++++|+|.+
T Consensus 383 ~~d~vi~~G~~~~~i~~~~~---~~~~~~~~~~~i~~l~~~~~~~d~~~iL~KGSr~~~le~~v~~L~~~~ 450 (452)
T 1gg4_A 383 GIDRVLSVGKQSHAISTASG---VGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG 450 (452)
T ss_dssp TCSEEEEESSSTHHHHHHTT---SCEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHHC---
T ss_pred CCCEEEEECCCHHHHHHHCC---CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 99999997828899986478---870638999999999985336995699991418515999999998628