HHsearch results for GI: 254781101 and protein with PDBid: 1p3d_A
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=0 Score=412.34 Aligned_cols=340 Identities=19% Similarity=0.265 Sum_probs=268.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9939998303654201233467777520112-221221101457410001232214443015664433211212232322
Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~-~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
..++||||||||||||+.|++++|+..+... ...|| ++.|+......++.+++|+|++.++ +++ .. ++|+
T Consensus 117 ~~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~g~----~~~~~~~~~~~~~~~~~V~E~s~~~-~~~---~~-~~p~ 187 (475)
T 1p3d_A 117 FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGG----LVKSAGKNAHLGASRYLIAEADESD-ASF---LH-LQPM 187 (475)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEE----EETTTTEEEECCSSSEEEEECCCTT-SGG---GG-CCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC----CCCCCCHHCCCCCCCEEEEEECCCH-HHH---HH-CCCC
T ss_conf 6525788656787517999999999779997899898----1465410033689872899976344-558---63-5998
Q ss_pred EEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0255531210123444-578888654331037622101210134246899875201233333222222222222234421
Q gi|254781101|r 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 (472)
Q Consensus 186 iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~ 264 (472)
++|||||++||||+|+ ++|+|+.+|.+++++++++|.+|+|.||+....+...... ++++||.+++++++...+.
T Consensus 188 iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~----~~~~fg~~~~~~~~~~~~~ 263 (475)
T 1p3d_A 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGR----QVITYGFSEQADYRIEDYE 263 (475)
T ss_dssp EEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCS----EEEEEESSTTCSEEEEEEE
T ss_pred EEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCC----CEEEECCCCCCCCCCCCCH
T ss_conf 899967871242010688999999999999569948889996886788766786378----5799525766552211100
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC-EECCCCCCEEEE
Q ss_conf 134651001245-654322122222222333322103567651012103455431147664433101-000365311331
Q gi|254781101|r 265 QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLI 342 (472)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~-~~~~~~~~~~iI 342 (472)
.......+.+.. ......+.++++|.||++|+++|++++..+|++.+.|.++|++|+++++|+++. ++....+++.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiava~~lGi~~e~i~~aL~~f~g~~~R~e~~~ei~~~~~~~~ii 343 (475)
T 1p3d_A 264 QTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLV 343 (475)
T ss_dssp EETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEE
T ss_pred HHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEE
T ss_conf 00146520001244420122004675466999999999999849999999976764378753110688999548978999
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-----------CCCH
Q ss_conf 00025653210125777874111026871388512354171058999999999986499899998-----------8038
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~-----------G~~~ 411 (472)
|| |||||+|+++++++++.+. ++|+++++++|.+ +....++|.++++.+. .+|.+++. |...
T Consensus 344 DD-ya~~p~si~a~l~al~~~~---~~~~ii~i~~~~~-~~~~~~~~~e~~~~l~--~~d~vil~~i~~a~e~~~~g~~~ 416 (475)
T 1p3d_A 344 DD-YGHHPTEVGVTIKAAREGW---GDKRIVMIFQPHR-YSRTRDLFDDFVQVLS--QVDALIMLDVYAAGEAPIVGADS 416 (475)
T ss_dssp EE-CCCSHHHHHHHHHHHHHHH---CSSCEEEEECCBC-HHHHHHTHHHHHHHHT--TSSEEEEECCBCTTCCCCTTCSH
T ss_pred EC-CCCCHHHHHHHHHHHHHHC---CCCEEEEEECCCC-CCCHHHHHHHHHHHHH--HCCEEEECCCCCCCCCCCCCCCH
T ss_conf 76-7889799999999998656---9976999954777-7327899999999998--49999987766776665458489
Q ss_pred HHHHHHCCC--CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 989985113--797999789899999999844789899997713254899999999850
Q gi|254781101|r 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 412 ~~~~~~~~~--~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
+.+.+.+.. ..+..++++.+++++.+.+.+++||+||+|||++ +.++.+.|.|+|
T Consensus 417 ~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~GsG~--i~~~~~~l~~~l 473 (475)
T 1p3d_A 417 KSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS--VSKISRGLAESW 473 (475)
T ss_dssp HHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCEEEEECSST--HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC--HHHHHHHHHHHH
T ss_conf 999999986089897996999999999998589989999978998--899999999985