HHsearch results for GI: 254781101 and protein with PDBid: 2am1_A
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=100.00 E-value=0 Score=708.05 Aligned_cols=444 Identities=29% Similarity=0.417 Sum_probs=384.7
Q ss_pred CCCCCCHHHHHHHHCCEE-ECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 954356788998727999-5268871474677402223789888971688747688899999869889998552124554
Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 (472)
Q Consensus 1 m~~~~~~~~l~~~~~g~~-~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~ 79 (472)
|+ | ++.||+++++|+. +...+|..|++|++|||+|+||++|||++|++ |||+||++|+++||+++|++++.
T Consensus 1 m~-~-~l~~i~~~~~~~~~~~~~~d~~i~~i~~dSr~v~~g~lFva~kG~~-dG~~yi~~A~~~GA~~vv~~~~~----- 72 (454)
T 2am1_A 1 MK-L-TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEV----- 72 (454)
T ss_dssp CC-C-BHHHHHHHHTCSSCSTTSCCCBCCCEESCGGGCCTTCEECCCBSSS-BGGGGHHHHHHHTCSEEEESSCC-----
T ss_pred CC-C-CHHHHHHHHCCCCCCCCCCCCEECEEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCEEEEECCCC-----
T ss_conf 95-6-2999999868866677677831665995087279998899947884-07999999998799899988747-----
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCC
Q ss_conf 46972899599899999999999830699399983036542012334677775201122212211014574100012322
Q gi|254781101|r 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 (472)
Q Consensus 80 ~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~ 159 (472)
.++|+|.|+|+++||+.||+++|.+++.++||||||||||||++|++++|+..+.++.++||+|+.+|+|++++.++++
T Consensus 73 -~~~p~i~V~d~~~al~~la~~~~~~~~~~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~gn~~~~~g~~~~~~~~~~~ 151 (454)
T 2am1_A 73 -SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEG 151 (454)
T ss_dssp -CSSCEEECSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHHTCCTT
T ss_pred -CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHCCCC
T ss_conf -8999999898999999999999708898589994258877320278998776167333168768776737888734221
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHC
Q ss_conf 14443015664433211212232322025553121012344457888865433103762210121013424689987520
Q gi|254781101|r 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 (472)
Q Consensus 160 ~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~ 239 (472)
++++|+|+|++++|++..++.+++|+++|||||++||||+|+|+|+|+++|++||+.+++++.++.|. |+........
T Consensus 152 ~~~~v~E~~~~~~~~~~~l~~~~~p~iaviTNI~~dHld~~~s~e~y~~~K~~lf~~~~~~~~vi~~d-d~~~~~~~~~- 229 (454)
T 2am1_A 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPA-DPIVEDYLPI- 229 (454)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEES-CGGGGGGCCS-
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECCC-CHHHHHHHHH-
T ss_conf 03678886035421378872567996899908866765541006899998888873467545220267-7899998753-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 12333332222222222222344211346510012456543221222222223333221035676510121034554311
Q gi|254781101|r 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472)
Q Consensus 240 ~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472)
. ....+++ ...++......... ..+.+........+.++++|.||++|+++|++++..+|++.+.+.++|.+
T Consensus 230 ---~-~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~nv~N~laAia~~~~lg~~~~~i~~~l~~ 301 (454)
T 2am1_A 230 ---D-KKVVRFG--QGAELEITDLVERK--DSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQH 301 (454)
T ss_dssp ---S-SEEEEES--TTSSBCEEEEEECS--SCEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHGGG
T ss_pred ---C-CCCCCCC--CCCCEEHHHHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCC
T ss_conf ---0-2332004--56420013322034--55421245432343335566789999999999998733531221200124
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864
Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472)
Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472)
|++++||++... ..++.++|||||||||+||+++|++++.++....+|+|+|+|+|.|||++++++|+++++.++..
T Consensus 302 ~~~~~~R~e~~~---~~~~~~iidDsya~nP~s~~~aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~ 378 (454)
T 2am1_A 302 LELTRNRTEWKK---AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPD 378 (454)
T ss_dssp CCCCCCCSCEEC---CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTT
T ss_pred CCCCCCCCEEEE---CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHC
T ss_conf 566553001687---37992686562369999999999999863320378669997862001535899999999999982
Q ss_pred CCCEEEEECCCHHHHHHHCCC---CCCEE------EECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 998999988038989985113---79799------97898999999998447898999977132548999999998
Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPR---SIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472)
Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~---~~~~~------~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472)
.+|.|+++|++...+.+.... ..... .+++++++++.+.+.+++||+|||||||+++||++++.|++
T Consensus 379 ~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~gDvVLiKGSr~~~le~iv~~Lkn 454 (454)
T 2am1_A 379 VLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLEN 454 (454)
T ss_dssp TCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEESSCCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 9989999798889999999862243541145530212789999999996379999899983754009999998449