BLAST/PSIBLAST alignment of GI: 254781101 and GI: 116253052 at iteration 1
>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477
>gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%)
Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
M+ LWT D++ + G G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A
Sbjct: 1 MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59
Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
+ GA L++V+ + ++G L++P+ V+DVL AL +L +A+R RS+A IIA+TGSVGKT
Sbjct: 60 MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119
Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179
Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L +
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239
Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
+LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299
Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
G+V I+ AD+ AI+AL+ P++GRGKR+R + G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359
Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
+ P G GRRIAVLGDM EMGE +Q H DLA L I HVWL+G + ALK++LP
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419
Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468