BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] (472 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 472/472 (100%), Positives = 472/472 (100%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA Sbjct: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT Sbjct: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 >gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] Length = 477 Score = 314 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 236/471 (50%), Positives = 314/471 (66%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT D++ G +G +P + GISIDSR++ EAFFAIKG DGHD+ A Sbjct: 1 MNWLWTVADMIAITAGRPVGNLP-TGITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAGL+VV + ++G L++P+ V+DVL AL KLA+AAR R+ A IIA+TGSVGKT Sbjct: 60 VANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML AL+ + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIAPAHL NF IEEIASAKAEIFEGLE G + LN D++ FE L+ + Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQLEEAAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ I +FG+ ADF+L ++ S S + L G++ E+ + G H+A N + L Sbjct: 240 DQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V++ A++D A + L +GRG+R+R + G F LIDESYNANPASM+AAI+VL Sbjct: 300 GAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G GRR+AVLGDM EMGE S H +LA L I HVWL+G + AL+DALP Sbjct: 360 AETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGEAMAALRDALPD 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S+ V + T L F + GD ++VKSS GF +++ LL+++PA Sbjct: 420 SVTVIWFPTTAELADFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPAF 470 >gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 242/471 (51%), Positives = 328/471 (69%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ + G G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L++V+ + ++G L++P+ V+DVL AL +L +A+R RS+A IIA+TGSVGKT Sbjct: 60 MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD+ AI+AL+ P++GRGKR+R + G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAVLGDM EMGE +Q H DLA L I HVWL+G + ALK++LP Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPPF 470 >gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 477 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 240/471 (50%), Positives = 328/471 (69%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRS P AFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GE+R L Sbjct: 120 TTKEMLRHVLAPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEVRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD+ AI+AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAVLGDM EMG+ +Q H DLA L I HVWL+G + ALK++LP Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPPF 470 >gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 477 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 245/471 (52%), Positives = 330/471 (70%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSIAP EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVE 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RPH+A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P GRRIAVLGDM EMGE +Q H DL L I HVWL+G + ALK++LP Sbjct: 360 AASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTGELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPPF 470 >gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CNPAF512] Length = 479 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 244/473 (51%), Positives = 328/473 (69%), Gaps = 3/473 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSIA EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGALPEG-ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L A+R RS+A IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAIS 358 G+V I+ AD++ AI AL+ P++GRGKR+R G FTLIDESYNANPASM+AAI+ Sbjct: 300 GVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIA 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ P G GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++L Sbjct: 360 LLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESL 419 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 P S+HV Y E L ++ +++ GDV++VKSS GF +++ LL++FPA Sbjct: 420 PESVHVEYREKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPAF 472 >gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] Length = 486 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 240/476 (50%), Positives = 327/476 (68%), Gaps = 6/476 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ AI G S G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAIVGRSFGAMPEG-ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V++ + ++G L++P VDDVL AL +L VAAR R++A IIA+TGSVGKT Sbjct: 60 MANGAAMIVISEARLPAMGRLTVPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H EIR L Sbjct: 120 TTKEMLRRTLSPSGKVHASVASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V PH+A+ITTIAPAHL NF I EIA+AKAEIF+G+ G + LN D+ FE L+ + Sbjct: 180 MVEPHVAIITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAAL 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ ++SFG+ AD +L ++ E S + + + G++MEV G H+A+N L L Sbjct: 240 AAGVEHVHSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V ++ AD+D AI AL+ ++GRG+R++ + G+FTLIDESYNANPASM+AAI++L Sbjct: 300 GTVMLVDADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGE-----GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + SP GRRIAVLGDM EMG+ +Q H +LA L I +VWL+G + AL+ Sbjct: 360 ATSSPDANVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGPEMAALR 419 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 DALP S++V Y E + L F+ +S+ GDV++VKSS GF +++ LL++FPA Sbjct: 420 DALPESVYVEYRENTEELAEFVLNSVAPGDVLMVKSSLGTGFGKIVTALLDKFPAF 475 >gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 472 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 355/472 (75%), Positives = 408/472 (86%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWTFHDLL AIQG ++G VP+ FV GISIDSRSIAP+EAFFAIKG HYDGHDF+LHA Sbjct: 1 MSNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQK A LVV+N +M+ASIG LS+PVF V+DVL ALNKLA AARLRS+A IIAITGSVGKT Sbjct: 61 VQKSACLVVINAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML +ALSS K + I SYNNHIGVPLTLA+MP D +FGIFELGMSHLGEIRFLTH Sbjct: 121 TAKEMLKLALSSAGKIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEIRFLTH 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPHIA+ITTIAPAHL NFSGIEEIASAK+EIFEGLEKTGT+ LN DDSFFE LK KSH Sbjct: 181 LVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFLKEKSH 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LGI +Y+FG+S +ADF+L +QCSE+S M VQLQGKS EVVHH +G HMAQN+L TL Sbjct: 241 LLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAVGRHMAQNILATL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GIVS+L A ++ AI+ +S+F+P++GRGKRYRCAL +GFFTLIDESYNANP SM+AAISVL Sbjct: 301 GIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTSMRAAISVL 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQISPHG+GRRIAVLGDM EMGE ++SFHIDLAE+L YNISHVWLSG HVLALK+ALP+ Sbjct: 361 SQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVLALKNALPK 420 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +HVHY E +D LFIQSSL+DGDV+V+KSS+SCGF+ L+ LLLEEF IQ Sbjct: 421 DMHVHYRERIDDFLLFIQSSLIDGDVIVIKSSHSCGFHSLVELLLEEFTLIQ 472 >gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] Length = 477 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 232/471 (49%), Positives = 317/471 (67%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ G +G +P + GISIDSR++ EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTVADMIAITAGRPVGNLP-TGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA L+VV + ++G L++P+ V+DVL AL KLA+AAR R+ A IIA+TGSVGKT Sbjct: 60 VANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML AL+ + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIAPAHL NF IEEIA+AKAEIFEG+E+ G++ LN D++ FE L+ + Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ I +FG+ ADF+L ++ + S + L G++ E+ + G H+A N + L Sbjct: 240 EAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V++ A++D A++AL +GRG+R+ +N G F LIDESYNANPASM+AAI+VL Sbjct: 300 GAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G GRR+AVLGDM EMGE S H +LA L I HVWL+G + AL+DALP Sbjct: 360 AETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPD 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S+ V + T L F + GD ++VKSS GF +++ LL+++PA Sbjct: 420 SVTVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPAF 470 >gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] Length = 1257 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 205/467 (43%), Positives = 272/467 (58%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLW D L+A+ G G + + GISIDSR+I P EAFFAIKG ++DGH F AV+ Sbjct: 785 PLWLLSDFLEAVDGDVHGDLAD-DITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVE 843 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + VV+ + + + VDDVL AL +L VAAR RSKA IIA+TGSVGKT T Sbjct: 844 AGASVAVVSREKLGELPEGG-RYVAVDDVLKALERLGVAARARSKARIIAVTGSVGKTGT 902 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L + LS T+A + S+NNH GVPLTLARM D +FGIFE+GM+H GEI L +V Sbjct: 903 KEALRLCLSKSGITHAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEITPLVKMV 962 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A++TT+ P HL F+ +E+IA AKAEIF G+E G LN D+ ++LL+ + Sbjct: 963 RPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLLRYLAAVA 1022 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+K I SFG A +K + S + + G+ + G H N L L Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L A++ A AL+ +GRG + +N G L+DESYNANPASM+AAI++++ Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + GRRIAVLGDM E+G S H DLA L I V+ G H+ L + LP Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVGTHMKVLWERLPAQT 1202 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 YSET D L + S + D+V+VK S L++ L + FP Sbjct: 1203 RGAYSETSDKLEKDLLSEVRPNDIVMVKGSLGTRMGPLVDALKKRFP 1249 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 156/472 (33%), Gaps = 37/472 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ A G ++G++ DSR++ P F A+KG DG FI AV G Sbjct: 6 LTKQEIDSA-AGDGPDGAGALTISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAG 64 Query: 65 AGL---VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A D + +P+ +D L +A A R ++A+TG+ GKT+ Sbjct: 65 AAAILIDADRIDDDIRKKAKQVPLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTS 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------L 167 + A +G+ + + + E + Sbjct: 125 VAVFVRQIFEYAGLVSASLGTIGTVTSTGQSYGGLTTPDPVSLHEDLKRLAEDGITHAAM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + VR A T + H+ +E+ AK +F L + + Sbjct: 185 EASSHGLDQHRLDGVRIVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVID 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 ++ F + ++ G D ++R + +E++ V Sbjct: 245 PEAQFADRVLEVAKERGLKTFTTG-FFGEDLKVRSVQPEGFSQVLELETAEGVFSVALPL 303 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L+ G+ + TA++AL+V GR + N +D ++ Sbjct: 304 AGDFQVSNALIAAGLAIAAGVPLQTALEALTVLRGAPGRIEHVGTRENGA-LVFVDYAHK 362 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 +VL+ + P GR I+V G G + L +S ++ Sbjct: 363 PEALE-----NVLAALRPFAPGRLISVFG----CGGDRDAGKRPLMGEISARLADVSIVT 413 Query: 408 GFHVL-----ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++++ + + L +GDV+ V K Sbjct: 414 DDNPRTENPDSIREEIVAACPAALEIGDRALAIRQAVKMLQEGDVLCVAGKG 465 >gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] Length = 477 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 241/471 (51%), Positives = 318/471 (67%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT DL+ A+ G +G +P G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MTLLWTIEDLVAAMTGRPVGTMPPG-ITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA L+VVN + ++G L++P+ VDDVL AL +LA+AAR RS+A I+A+TGSVGKT Sbjct: 60 VANGAALMVVNEAKLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ + +A + S+NNH GVPLTLARMP +G+FE+GM+H GEI L Sbjct: 120 TTKEMLRQVLAPSGEVHAAVASFNNHWGVPLTLARMPATAQYGVFEIGMNHSGEITPLVQ 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AVITTIAPAHL NF+ ++EIA AKAEIF G+ G + LN+D+ +FE L+ K+ Sbjct: 180 MVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLNHDNPYFEYLEHKAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI I+SFG+ A+F+L ++ +E S + G++ EVV G H+A+N + L Sbjct: 240 EAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRHIAENAMAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +L AD+D A+ ALS P +GRG+R+R G FTLIDESYNANPASM+AAI+VL Sbjct: 300 GAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P GEG RIAVLGDM EMGE S+ H DLA L I HVWL+G + AL+ LP Sbjct: 360 AAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAGPLLAAGIEHVWLAGPAMAALRAQLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 ++ V T + L F +S+ GDVV+VKSS GF +++ LL+ +P + Sbjct: 420 TVSVASFNTAEDLAAFAVASVHGGDVVMVKSSLGIGFGKIVAALLDNYPPL 470 >gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] Length = 458 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 140/464 (30%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+ + G V+G+S D+R+I + +KG +DGH F+ A+ KG Sbjct: 5 TLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + +PV VDD L AL +LA R + A +I ITGS GKTTTK+ Sbjct: 65 ASAVLWSE--TEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ L++ K G+ NNHIGVPLTL R+ DV+ + E+GMS+ GEI L+++ P Sbjct: 123 IVAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A+IT I +HL E IA AK EI GL+K G N D+ A H Sbjct: 183 DAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVA--HLPLP 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG+ D+ + M Q + +G H N L L + Sbjct: 241 EHVLTFGQGNKNDYYPESVHLQANG-MMFTIRQAANRSFFLPILGKHHVYNALAALAVAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +ALS + R + +T+I+++YNANP SMKAA+ +L +++ Sbjct: 300 FFDVSWENVQEALSR---LQVTRMRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + + AVLGDM E+G+ FH ++ +L + +V+ G + A Sbjct: 357 GYKKKM--AVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPD 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V+ E L + + + GDV+++K+S L+ L Sbjct: 415 GRVNAYEDKRALAKDLLAVVSPGDVILLKASRGMKLEELLPDLQ 458 >gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] Length = 458 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 140/464 (30%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+ + G V+G+S D+R+I + +KG +DGH F+ A+ KG Sbjct: 5 TLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + +PV VDD L AL +LA R + A +I ITGS GKTTTK+ Sbjct: 65 ASAVLWSE--TEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ L++ K G+ NNHIGVPLTL R+ DV+ + E+GMS+ GEI L+++ P Sbjct: 123 IVAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A+IT I +HL E IA AK EI GL+K G N D+ A H Sbjct: 183 DAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVA--HLPLP 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG+ D+ + M Q + +G H N L L + Sbjct: 241 EHVLTFGQGNKNDYYPESVHLQANG-MMFTIRQAANRSFFLPILGKHHVYNALAALAVAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +ALS + R + +T+I+++YNANP SMKAA+ +L +++ Sbjct: 300 FFGVSWENVQEALSR---LQVTRMRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + + AVLGDM E+G+ FH ++ +L + +V+ G + A Sbjct: 357 GYKKKM--AVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPD 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V+ E L + + + GDV+++K+S L+ L Sbjct: 415 GRVNAYEDKRALAKDLLAVVSPGDVILLKASRGMKLEELLPDLQ 458 >gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 476 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 221/474 (46%), Positives = 308/474 (64%), Gaps = 3/474 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ LW D+++A++G G +P G + GISIDSRS+ P EAFFAIKG +DGHDF+ Sbjct: 1 MSEWLWKSDDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GAGL+VV + + G+ +P+ V+DVL AL KL +A+R RSKA IIA+TGSVGK Sbjct: 60 AMAAGAGLIVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE L LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H EIR L Sbjct: 120 TTTKEALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLV 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F+ L+ + Sbjct: 180 KMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELA 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G++ I +FG++ +D++LR+ K S M V+ V G H+ QNML Sbjct: 240 EKAGVEHIVTFGENARSDYRLREVKLHPTCSCMTVKAGTHEAAVKVGMPGRHIVQNMLAV 299 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+ Sbjct: 300 LGAADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSL 359 Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +P G GRRIAVLGDM E+G S H DLA + ++ +++ G + ALK+AL Sbjct: 360 LHSTAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNALFIGGPDMSALKNAL 419 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 P IH Y ++ D L + ++ GDV++VKSS GF +++ L+ +FP ++ Sbjct: 420 PVEIHTEYRQSTDELLPLVVKTVRPGDVIMVKSSKGIGFSKIVKALISQFPPVE 473 >gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] Length = 476 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 221/474 (46%), Positives = 310/474 (65%), Gaps = 3/474 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ LWT +D+++A++G G +P G + GISIDSRS+ P EAFFAIKG +DGHDF+ Sbjct: 1 MSDWLWTSNDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTS 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GAGL+VV + + G+ +P+ V+DVL AL KL +A+R RSKA IIA+TGSVGK Sbjct: 60 AMAAGAGLLVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE L LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H EIR L Sbjct: 120 TTTKEALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLV 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F+ L+ + Sbjct: 180 KMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELA 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G++ I +FG++ +D++LR+ K S M V++ V G H+ QNML Sbjct: 240 EKAGVEHIATFGENARSDYRLREVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAV 299 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+ Sbjct: 300 LGAADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSL 359 Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +P G GRRIAVLGDM E+G S H DLA + ++ +++ G + ALK+AL Sbjct: 360 LHSTTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNAL 419 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 P I Y ++ D L + ++ GDV++VKSS GF +++ L+ +FP ++ Sbjct: 420 PVEIQTEYRQSTDELLPLVIKAVRPGDVIMVKSSKGIGFSKIVKTLISQFPPVE 473 >gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 225/472 (47%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G I + V GIS DSR + E F +KG YDG DF+ A Sbjct: 1 MMELL-IDEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + KGA V+ + V + S+ V V++ L AL+K+A R + IA+TGS GK Sbjct: 60 IDKGAIAVITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS K G++NN IG+PLT+ + + E+GMS GEIR L Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLK 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++ P +AV T I AH+ E I AK E+ E ++ I LN DD + K Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ K D K+ + ++ + E+ G H N L Sbjct: 240 SSKYYRYGIKSGEIKACD-----IKKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +V+ +AL F P GK + +G +ID+ YNANP SMKAA+SV Sbjct: 295 ICVGLEFGINVEDMAEALKDFQP----GKMRLNIIEKGDMKIIDDVYNANPDSMKAALSV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + + IAVLGDM E+GE + H ++ ++++ +I + SG + + Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T + + ++ + +GD ++VK S +++ L E Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459 >gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] Length = 473 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 206/472 (43%), Positives = 294/472 (62%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ AI G +G +P+ +G+SIDSR++A + FF IKG H DGHDF A Sbjct: 1 MTALWDKKALVAAINGVVMGSMPET-FSGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GAG+++V + + +S P+ V DVL AL KLA AAR RS+A IIAITGSVGKT Sbjct: 60 YERGAGVLIVAEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL+ +A + S NN GVPLTLARMP++ D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALAMTGNVHANLASLNNCWGVPLTLARMPIESDYGIFEIGMNHRDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+A+IT I H+ F +EEIA AKAEIFEGL++ G LN D FF L K+ Sbjct: 180 LVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEGLDEKGIAILNADSDFFSYLVQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+SKNAD+Q R + +++S M V+++ + EV G H+ QN L + Sbjct: 240 KCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + +++ + + F ++GRG RYR +L+ G + + SYNANPASM+AA+ + Sbjct: 300 AACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ EGRRIA+LGDM E+GE S+ H DL + + L + V+L G + +L L Sbjct: 360 LATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + + + + GD+++VKSSNS ++ LL+ + A+ Sbjct: 420 AGVKVHYAENIEKILSLLLAEISSGDLLMVKSSNSLCSSNIVTALLDRYKAV 471 >gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] Length = 463 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 134/464 (28%), Positives = 213/464 (45%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+ + G V G+S D+R+I + +KG ++GH F+ A+ KG Sbjct: 10 TLRDIQSMVDGRGLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAIDKG 69 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ +PV VDD L AL +LA R + +I ITGS GKTTTK+ Sbjct: 70 ASAVLWAE--TEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTTKD 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ K G+ NNHIGVPLTL R+ D + + E+GMS+ GEI L+++ P Sbjct: 128 MIAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIAEP 187 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +HL E IA AK EI GL+K G + D+ + Sbjct: 188 DAAVITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYHGDEPLL--VNRVPDLPLP 245 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + FG+ + D+ + + + Q + +G H N L + + Sbjct: 246 EHVLRFGQGSDNDYYPKAVHVQANGTT-FTVHQAPNRSFFLPILGKHHVYNALAAIAVAR 304 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +A S + R + +T+I+++YNANP SMKAA+ +L +++ Sbjct: 305 FFHVSWEKIQEAFSQ---LQVTRMRMELIETKKGWTIINDAYNANPTSMKAALQLLHELT 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + + IAVLGDM E+G+ FH ++ +L + +V+ G + A Sbjct: 362 GYEKK--IAVLGDMLELGDQEVEFHREIGAMLRPEMVDYVFTYGALARHIALAAQPFFPD 419 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V E L + + + GDV+++K+S L+ L Sbjct: 420 GRVKAYEDKQSLAKDLLAVVSSGDVILLKASRGMKLEELLPDLQ 463 >gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 472 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 210/472 (44%), Positives = 297/472 (62%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW +L+ AI G IG +P+ +G+SIDSR++A + FF IKG H DGHDF L A Sbjct: 1 MTALWNKQELITAIDGVVIGNIPET-FHGVSIDSRALAEGDIFFCIKGHHLDGHDFALQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG+++V + + +S P+ V DVL AL KL AAR RS+A IIAITGSVGKT Sbjct: 60 YARGAGVLIVAEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L++ +A + S NN GVPLTLARMPV+ D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQVLATAGNVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+A+IT I H+ F +EEIA AKAEIFEGL++ G LN D +FF L K+ Sbjct: 180 LVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEGLDEEGIAILNADSAFFSYLVQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+++NAD+Q R + + S M V++ G+ EV G H+ QN L + Sbjct: 240 QCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + D+D+ + +LS F P++GRG RYR +L+ G + + SYNANPASM+AA+ + Sbjct: 300 AACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ +GRRIAVLGDM E+GE S+ H DL + + L + V+L G + +L L Sbjct: 360 LATGPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + + + + GD++++KSSNS ++ LL+ + A+ Sbjct: 420 ADVKVHYAENIEKILPLLLTEISPGDLLMIKSSNSLCSSNIVTALLDRYKAV 471 >gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652] gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CIAT 652] Length = 470 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 237/464 (51%), Positives = 321/464 (69%), Gaps = 3/464 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A+ G G +P+G + GISIDSRSI EAFFAIKG DGHD+ A+ GA L+V Sbjct: 1 MIAAMAGRPFGALPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + ++G L++P+ V+DVL AL +L A+R RS+A IIA+TGSVGKTTTKEML Sbjct: 60 VSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHV 119 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L ++RP +AVI Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + +LG++ I+S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ A+F+L ++ E S + + + G+++EV G H+A+N L LG+V I+ AD Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 310 VDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ AI AL+ P++GRGKR+R G FTLIDESYNANPASM+AAI++L+ P G Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 E L ++ +++ GDV++VKSS GF +++ LL++FPA Sbjct: 420 EKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPAF 463 >gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 477 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 222/470 (47%), Positives = 306/470 (65%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT L+ A+ G +G +P+G ++GISIDSRS+ P +AFFAIKG DGHDF A Sbjct: 1 MSLLWTSDALVAAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG++VV + S+G L+ P+ V+DVL AL KL VAAR RS+A IIA+TGS GKT Sbjct: 60 IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L LS++ K +A S+NNH GVPLTLARMP + D+ +FE+GM+H EIR L Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPDNCDYAVFEIGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A++T IA AHL F ++EIA AKAEIFEGLE G LN DD F+LL +H Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDGRFKLLDKMAH 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ +Y FG++ + F+L K + ++ S + ++ G M G HM QN+L L Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G ++ AD++ AL+ + GRGKR+ G TLIDESYNANPASM AA+++L Sbjct: 300 GAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GEGRRIAVLGDM E+G+ S H LA+++ V+L G + AL +ALP Sbjct: 360 NATPVTGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMRALAEALPG 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 I + Y ++ L + ++L GDVV++KSS GF +L++ LL ++PA Sbjct: 420 DIKMEYRAGVEQLKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKYPA 469 >gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 219/472 (46%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G I + V GIS DSR + E F +KG YDG DF+ A Sbjct: 1 MMELL-IDEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + KGA V+ + V + S+ V V++ L AL+K+A R + IA+TGS GK Sbjct: 60 IDKGAIAVITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS K G++NN IG+PLT+ + + E+GMS GEIR L Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLK 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++ P +AV T I AH+ E I AK E+ E ++ I LN DD + + Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ K D ++ + ++ + E+ G H N L Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +V+ +AL F P + R + YNANP SMKAA+SV Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDD----VYNANPDSMKAALSV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + + IAVLGDM E+GE + H ++ ++++ +I + SG + + Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T + + ++ + +GD ++VK S +++ L E Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459 >gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] Length = 477 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT L+ A+ G +G +P+G ++GISIDSRS+ P +AFFAIKG DGHDF A Sbjct: 1 MNLLWTSEALVTAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG++VV + S+G L+ P+ V+DVL AL KL VAAR RS+A IIA+TGS GKT Sbjct: 60 IKAGAGVLVVAEGKLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L LS++ K +A S+NNH GVPLTLARMPVD D+ +FE+GM+H EIR L Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPVDCDYAVFEIGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A++T IA AHL F ++EIA AKAEIFEG+E G LN DD+ F+LL +H Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDGAAILNRDDARFKLLDKMAH 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ +Y FG++ + F+L K + ++ S + ++ G M G HM QN+L L Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +++AD+D + AL+ + GRGKR+ G TLIDESYNANPASM AA+++L Sbjct: 300 GAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GEGRRIAVLGDM E+G+ S H LA+++ V+L G + AL +ALP Sbjct: 360 NTTPVAGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMKALAEALPA 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 I Y L + ++L GDVV++KSS GF +L++ LL +FPA Sbjct: 420 EIQTEYRAGAAELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 469 >gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] Length = 476 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 195/471 (41%), Positives = 274/471 (58%), Gaps = 3/471 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ PLWT + A G + G V + GISIDSR++ P +AF AIKG DGHD++ Sbjct: 1 MSDPLWTSEVFIDACGGTAKGDVG-AHITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA L +V D + + VDD L A+ L VAAR R+ A I+A+TGSVGK Sbjct: 60 ALEAGASLALVAEDSLGDLPDDG-RYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L +AL+ K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI L Sbjct: 119 TGTKEALRLALAPSGKVHASVASFNNHWGVPLTLARMPADTDFGVFEIGMNHAGEITPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A+ITT+ H+ F +E+IA AKAEIF GLE G LN D+ ++LL+ + Sbjct: 179 QMVRPHVAIITTVEAVHIEFFESVEKIAQAKAEIFNGLEPDGVAILNRDNKQYDLLRFLA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ++ + +FG+ + D L+ + + +E + G+ + G H+ QN L Sbjct: 239 ATAAVRNVQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V+ L AD+ AL +GRG++ R ++ G LIDESYNANPASM+AA SV Sbjct: 299 LTAVADLGADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+Q + G GRRIAV+GDM E+G + H +L + I V+ +G H+ AL D LP Sbjct: 359 LAQATLGGSGRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPHMAALWDKLP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + H+ E L + + GDVV++K S L+ L +E+P Sbjct: 419 DDVKAHHREEAKDLIELLLKDVQPGDVVMIKGSLGTRMGPLVEALKKEYPP 469 >gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] Length = 470 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 237/461 (51%), Positives = 319/461 (69%), Gaps = 3/461 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A+ G G +P+G + GISIDSRSI EAFFAIKG DGHD+ A+ GA L+V Sbjct: 1 MIAAMAGRPFGTLPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + ++G L++P+ VDDVL AL +L A+R RS A IIA+TGSVGKTTTKEML Sbjct: 60 VSEARLPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHV 119 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L ++RP++AVI Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + +LG++ I+S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ A+F+L ++ E S + + + G+++EV G H+A+N L LG+V I+ AD Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 310 VDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ AI AL+ P++GRGKR+R G FTLIDESYNANPASM+AAI++L+ P G Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 E L ++ +S+ GDV++VKSS GF +++ LL++F Sbjct: 420 EKTSELTEYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKF 460 >gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 461 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 226/472 (47%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G I + V GIS DSR + E F +KG YDG DF+ A Sbjct: 1 MMELL-IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + KGA V+ D V + S+ V V++ L AL+K+A + IA+TGS GK Sbjct: 60 IDKGASAVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS K G++NN IG+PLT+ + + E+GM+ GEIR L Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLK 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++V+P +AV T I AH+ E I AK E+ E ++ I LN DD + + Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ K D ++ + ++ + E+ G H N L Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +V+ +AL F P GK + +G +ID+ YNANP SMKAA+SV Sbjct: 295 ICVGLEFGINVEDMAEALKDFQP----GKMRLNIIEKGDIKIIDDVYNANPDSMKAALSV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + + IAVLGDM E+GE + H ++ ++++ +I + SG + + Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNMSKYIAEESK 407 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T + + ++ + +GD ++VK S +++ L E Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459 >gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella schoenbuchensis R1] Length = 473 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 213/472 (45%), Positives = 293/472 (62%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW LL + G S+G +P+ +GISIDSRS+ + FF IKG DGHDF A Sbjct: 1 MTVLWDKQTLLSVMNGLSVGCLPET-FSGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGAG++VV + +A + L+ P+ V DVL AL KLA AAR RSKA IIA+TGSVGKT Sbjct: 60 YAKGAGVLVVAQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ + YA +GS+NN GVPLTLARMP D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALGTVGRVYANLGSFNNCWGVPLTLARMPADSDYGIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH+A+IT IA H+ F +EEIA AKAEIFEGL+ G LN D FF L K+ Sbjct: 180 LVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEGLDDEGVALLNADSHFFSRLVQKAE 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S+ A++Q ++ ++ S M + + + V G H+ QN+L L Sbjct: 240 QCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIGAPGRHIVQNILGVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + ++ AD+ AL+ F +GRG RYR +L G + + SYNANPASM+AA+ + Sbjct: 300 AVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GR+IA+LGDM E+G S+ H DL + + + + V+L G + L D L Sbjct: 360 LAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVFLVGKAMKFLADELS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 I V+YSE ++ L I + +GD++++KSS+S G R++ LL+ + I Sbjct: 420 TYIKVYYSEYIEELLPLILQEISEGDLIMIKSSHSVGLSRIVVALLDRYKKI 471 >gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 485 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 217/478 (45%), Positives = 297/478 (62%), Gaps = 9/478 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT L+ A+ G +G +P G ++GISIDSRS+ P +AFFAIKG DGHDF A Sbjct: 1 MSLLWTSEALVAAMDGRPLGPMPDG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG++VV + S+G L+ P+ V+DVL AL KL VA+R RS A IIA+TGS GKT Sbjct: 60 IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L ++ K +A S+NNH GVPLTLARMP D D+ +FE+GM+H EIR L Sbjct: 120 TTKEALRHVLQAVGKVHASAQSFNNHWGVPLTLARMPDDCDYAVFEIGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A++T IA AHL F ++EIA AKAEIFEGLE G LN DD+ F+LL +H Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDARFKLLDKMAH 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ +Y FG++ + F+L K + ++ S + ++ G + G HM QN+L L Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGRHMVQNVLAVL 299 Query: 301 GIVSILTADVDTAIKALSV--------FHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 G ++ AD+D AL+ + G TLIDESYNANPAS Sbjct: 300 GAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSHPGGLITLIDESYNANPAS 359 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA+++L+ GEGRRIAVLGDM E+G+ S H LA+++ V+L G + Sbjct: 360 MAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAALADLIVGTGTQTVFLGGPEMR 419 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 AL +ALP I Y ++ L + ++L GDVV++KSS GF +L++ LL +FPA Sbjct: 420 ALAEALPADIKTEYRAGVEELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 477 >gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 461 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 220/472 (46%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G I + V GIS DSR + E F +KG YDG DF+ A Sbjct: 1 MMELL-IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + KGA V+ D V + S+ V V++ L AL+K+A R + IA+TGS GK Sbjct: 60 IDKGASAVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS K G++NN IG+PLT+ + + E+GM+ GEIR L Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLK 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++ P +AV T I AH+ E I AK E+ E ++ I LN DD + + Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ K D ++ + ++ + + E+ G H N L Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +V+ +AL F P + R + + YNANP SMKAA+SV Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDD----VYNANPDSMKAALSV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + + IAVLGDM E+GE + H ++ ++++ +I + SG + + Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T + ++ + +GD ++VK S +++ L E Sbjct: 408 VCGMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459 >gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] Length = 476 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 277/471 (58%), Gaps = 3/471 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ PLWT ++A G G + GISIDSR++ P +AF AI G DGHD+++ Sbjct: 1 MSDPLWTLDAFVEAAGGRLQGDAG-AEITGISIDSRTLEPGDAFVAITGDRLDGHDYVVS 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA + +V D + + VDD L AL K+ VAAR RS A I+A+TGSVGK Sbjct: 60 AMEAGASVALVGEDRLPDL-PADGRYVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L + L+ K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI L Sbjct: 119 TGTKEALRLTLAESGKVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNHAGEISPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+ +ITT+ P HL F +E+IA AKAEIF+GLE G LN D+ F+LLK + Sbjct: 179 KMVRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A G+ I++FG+ +AD L+K S ++ + G+ + G H +N L Sbjct: 239 AAAGVSKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L AD+ A AL +GRG+ R + +G F LIDESYNANPASMKAA++V Sbjct: 299 LTAVVDLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GRRIAV+GDM E+G + H +L + ++ NI V+ +G H+ AL LP Sbjct: 359 LGEAPVTRPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAVYCAGPHMHALWKLLP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + HY E L + S + GDVV++K S L+ L +E+P Sbjct: 419 HDLRGHYCEEAKDLEDVLLSDVRSGDVVMIKGSLGTRMGPLVEALKKEYPP 469 >gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] Length = 461 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 208/472 (44%), Gaps = 14/472 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ +++ A+ G P V +S +SR + P F I G D H FI A Sbjct: 1 MEPI-RICEIVTAVGGALWKGNPNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + L V V D AL + A R R ++ +TGSVGK+ Sbjct: 60 LDTGAAACFTQQEPEEGFKYLDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKS 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEM+ ALS K+ + G+YN+ IG+PLT+ + + + E+GMS+ GE+ L+ Sbjct: 120 STKEMIAAALSQGKRVHKTAGNYNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEMERLSA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P AV+T I +H+ E I + K I + + + G ++LN DD + L+ Sbjct: 180 IASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRESYT 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +G + D++ + + E+ + +++ +G H N L + Sbjct: 240 GKIVW----YGMESDCDYRAVNIDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAI 295 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +D L + + T+ID+SYNA+P S+K+ I VL Sbjct: 296 AVAYDQGLTLDDIRCGLLTYEGL----AMRQQIHELDKITVIDDSYNASPDSIKSGIGVL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G++IAVL DM E+GE S H++L + + V G + + Sbjct: 352 --MAVKSTGKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLTVGREAEKIAEGAAE 409 Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 V T D F ++ L DGD V+VK S ++ LL ++ Sbjct: 410 ESRKILVKACGTNDEAFAELEKILNDGDCVLVKGSRGMHTDEIVQKLLTKYQ 461 >gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] Length = 505 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 202/470 (42%), Positives = 287/470 (61%), Gaps = 2/470 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW L++A++ +G+ G + GISIDSRS+ +AFFAI G +DGHDF+ +A + Sbjct: 5 LWETGVLIEAMRARPVGMDLPGGITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L VV+ + ++G + P+ VDDVL AL +LA AAR RSKA IIA+TGSVGKTTTK Sbjct: 65 GAALHVVSEKRLPALGRMQAPMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTK 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS+ +A + S+NNH GVPL+LAR+P D F IFE+GM+H GEIR L LVR Sbjct: 125 EALRQGLSACGSVHASVASFNNHWGVPLSLARLPADSRFAIFEIGMNHPGEIRPLVKLVR 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH A++T IA AHL +F ++EIA AKAEIFEG+ G+ +N DD+ L A + A G Sbjct: 185 PHAAIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGSAIINADDAKCMRLAAAAKAAG 244 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG+++ ADF++ ++ +E + + + G+ + V G H AQN L LG Sbjct: 245 VTNVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAA 304 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ +AL+ + +GRG+R++ G L D+SYNANPASM+AAI L+ Sbjct: 305 HVAGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLAN 364 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421 GRRIAVLGDM E+G S + H +LAE L I+ V L G + L +AL Sbjct: 365 AKLSENGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARVLLVGEEIKPLAEALGDEE 424 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 I +T + S + GD ++VK+S S G +++ L++ +P I Sbjct: 425 IECTTHKTPTEAEEQLFSDMRAGDAIMVKASRSIGLEKVVAALVDRYPPI 474 >gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] Length = 460 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 133/466 (28%), Positives = 218/466 (46%), Gaps = 17/466 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A +G I + V GIS DSR + E F +KG YDG DF+ A+ KGA Sbjct: 5 IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAS 64 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ D V + S+ V V++ L AL+K+A R + IA+TGS GKTTTK+M Sbjct: 65 AVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDM 124 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K G++NN IG+PLT+ + + E+GM+ GEIR L ++ P Sbjct: 125 IAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQ 184 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV T I AH+ E I AK E+ E ++ I LN DD + + + + Sbjct: 185 VAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYR 244 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 G+ K D ++ + ++ + + E+ G H N L + + Sbjct: 245 YGIKSGEIKACD-----IEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAICVGLE 299 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +V+ +AL F P + R + + YNANP SMKAA+SVL + Sbjct: 300 FGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDD----VYNANPDSMKAALSVLRDLPA 355 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RS 421 + IAVLGDM E+GE + H ++ ++++ +I + SG + + + Sbjct: 356 KRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGMKE 412 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ T + ++ + +GD ++VK S +++ L E Sbjct: 413 NNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 458 >gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] Length = 461 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 136/465 (29%), Positives = 210/465 (45%), Gaps = 14/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + ++ A+ G I P+ + ISIDSR+I P + F AI G +DGH FI A Sbjct: 1 MIPM-SLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 V KGA ++V+ + A G + + V+D AL LA R+ K T+I ITGS GK Sbjct: 60 VSKGARALIVDHSIKAYPG---VGIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ L G+ NN+ G+PLTL + D + + E+GMS LGEI L Sbjct: 117 TTTKDMIASVLKEKYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIELLA 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I VIT + P HL N + +A K E+ EGL G LNYD+ + +K Sbjct: 177 SISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDMKD-Y 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 Y F + + K + ++ + + + G H N L Sbjct: 236 VEGKKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERITLQKPGKHNVYNALAA 295 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + L D L + R+ TLI+++YNANP SMKAAI Sbjct: 296 IAVARYLRVDWGGIKNGLYN---IDLSSLRWDVRDLGNEITLINDTYNANPLSMKAAIEA 352 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 I+ I VLG M E+G++ + H+DL ++ N+ + G + Sbjct: 353 TFDIAQER---VITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGELGRLTARSAE 409 Query: 420 RS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + +V+ ++ + + GD ++VK S ++ Sbjct: 410 KEGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKMEEIVK 454 >gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] Length = 459 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 216/470 (45%), Gaps = 17/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + +L++A+ G + P G++ DSR + F + G +DGHD+I Sbjct: 1 MIS-FNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQC 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + + + + VDD AL LA R + ++ ITGSVGKT Sbjct: 60 FNAGATVCLTSKQIPTV---TGCTAILVDDTAKALRDLAAWYRRKFDIPVVGITGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK+M++ LS K G++NN IG+PLT+ + + + E+GMS GEI LT Sbjct: 117 STKDMVSCVLSQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISRLTA 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPHIA+IT I +H+ E I AK EI E L+K G + LN DD LK K Sbjct: 177 IARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKGKLS 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + G A K + + + E+ + V G H N L + Sbjct: 237 FRTVFYGMNVGSDYTALNYQPKGE---QGTTFEISVNDCLYNVEIPVPGIHNVYNALAAI 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ I + F P G + +N +I+++YNA+P SM+AAI+VL Sbjct: 294 AAGIEMKIPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +IS IAVLGDM EMG++S+ H + + + I+++ G + A+ Sbjct: 350 QEISSESRS--IAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTVGLDSRMISQAVAD 407 Query: 421 ----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H+ E +I ++ GD +++K S + + +++ Sbjct: 408 YGNSQTEIHHFENNKEALKYILEIVMPGDYILIKGSRGMKMEEIADGIMK 457 >gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 477 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 215/471 (45%), Positives = 298/471 (63%), Gaps = 1/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT ++ +A+ G +G +P G V GISIDSR++ +AFFAIKG +DGHDF A Sbjct: 1 MSLLWTVQEMTEAMDGRPLGNLPDG-VTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV + ++G L+ P+ V+DVL AL L AAR RS+A IIAITGSVGKT Sbjct: 60 IATGAALLVVAEAKLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 ++KEML AL + +A S+NNH GVPLTLARMP +G+FE+GM+H EIR L Sbjct: 120 SSKEMLRRALEPSGEVHASAASFNNHWGVPLTLARMPASAQYGVFEVGMNHPDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIA AHL NF + EIA+AKAEI EG+ K G + LN D+ F LK ++ Sbjct: 180 MVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVLLNRDNEKFSWLKKRAS 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + +FG+ AD++L K ++ S + ++ + V G H+ QN L L Sbjct: 240 ELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVKIGAPGRHLVQNALAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V + AD+ A AL+ ++GRG R+ +++ G F LIDESYNANPASM+AA+ +L Sbjct: 300 GAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNANPASMRAALELL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 GRRIAVLGDM EMG+ ++ H +LAE + + V LSG + AL+D L Sbjct: 360 RDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCLSGSEMKALRDELGN 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + Y +T D L +++ L DGDVV+VKSS GF R++ LL+++P + Sbjct: 420 EVETVYRDTADDLADHLKNVLRDGDVVMVKSSLGIGFGRIVKALLDKYPVL 470 >gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] Length = 464 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 132/466 (28%), Positives = 210/466 (45%), Gaps = 16/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++++A G I +NG+S DSR++ P + F A+ G YDGHDFI +AV G Sbjct: 3 LTVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+++ D IP+ V+D L AL +LA R T++AITGS GKTTTKE Sbjct: 63 ASAVMLSKDTADW----DIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + LS G+ NN IG+PLT+ + + + E+GMS LGEI L + RP Sbjct: 119 FIYAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLADIARP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 HI VIT I +H+ + I AK E+F+ LN DD L H++ Sbjct: 179 HIGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTL----HSVLP 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + F D ++ + + + + N+ +L V Sbjct: 235 CRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQREDIYLNIAGFH-NVYNSLAAVL 293 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + +R R LID++YNANP SM+AAI VL + Sbjct: 294 VGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPDIQLIDDTYNANPDSMRAAIEVLCDLD 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420 + IAVLGDM E+G ++++ H +L +++ I + G + D Sbjct: 354 SARK---IAVLGDMLELGGIAETAHTELGRIVAQKRIDVLVTVGRLAHFIADGAEASGMD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +++ + D ++ + GD +++K S+ ++ L E Sbjct: 411 AHNIYRFNSNDDAISWLDEHITHGDAILIKGSHGMHMDEIVKYLQE 456 >gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Sinorhizobium meliloti 1021] gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium meliloti 1021] gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] Length = 477 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 216/469 (46%), Positives = 306/469 (65%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+I EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AR RS A IIA+TGSVGKT Sbjct: 60 LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A + S+NNH GVPLTLARMP DFG+FE+GM+H GEI LT Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ G +N D + ++LL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G+ ++SFG + ++F+L ++ +E S + + G+++E+ G H+A+N L + Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD D + + P++GRG R+R + G T+IDESYNANPASM+AAIS+L Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIAVLGDM EMGE S + H LA + I+ VWL+G + L+DALP Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + + + L + ++ GDVV+VKSS G +++ LL+ +P Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468 >gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] Length = 477 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 217/469 (46%), Positives = 307/469 (65%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+I EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AAR RS A IIA+TGSVGKT Sbjct: 60 LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A + S+NNH GVPLTLARMP DFG+FE+GM+H GEI LT Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ G +N D + ++LL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G+ ++SFG + ++F+L ++ +E S + + G+++E+ G H+A+N L + Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD D + + P++GRG R+R + G T+IDESYNANPASM+AAIS+L Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIAVLGDM EMGE S + H LA + I+ VWL+G + L+DALP Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + + + L + ++ GDVV+VKSS G +++ LL+ +P Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468 >gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] Length = 461 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 226/472 (47%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A QG I + + GIS DSR + E F +KG YDG DF+ A Sbjct: 1 MMELL-IAEIVRATQGKLIKGSLKDKIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + KGA V+ D + + + V+D L AL+K+A R + +A+TGS GK Sbjct: 60 MTKGAKAVLTARLDNIEYLKDFPFNIIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS K G++NN IG+PLT+ + + E+GMS GEIR L Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLK 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++V+P +AV T I AH+ E I AK E+ E ++ I LN DD + + Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLLKILQQY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ K D ++ + ++ + E+ G H N L Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + DVD +AL F P GK + +G +ID++YNANP SMKAA++V Sbjct: 295 ICVGLEFGVDVDDMAEALKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + IAVLGDM E+GE + H ++ ++++ +I + SG + + Sbjct: 351 LRDFPGKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNTSKYIAEESK 407 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T + + ++ + +GD+++VK S +++ L E Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQER 459 >gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] Length = 458 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 126/468 (26%), Positives = 224/468 (47%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + + D+ I G I ++G+S D+R+I + +KG ++GH F+ Sbjct: 1 MI-IRSLADIQTMIPGSIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A +KGA + + +P+ V+D L AL +LA A R + +A II +TGS GK Sbjct: 60 AFEKGAAAALWSKH--EPNAPTDVPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ L ++ + G+ NNHIGVPLTL R+ + ++ + E+GMS GEI L+ Sbjct: 118 TTTKDMIASLLGTVYRVQKTEGNLNNHIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P +++IT I +HL E IA+AK EI +GL++ G + D+ LL+ + Sbjct: 178 TLAEPDVSIITNIGESHLQELGSREGIATAKFEIVKGLKRDGLFIYHGDEP---LLQTRV 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + +FG + D+ + ++ + + + +++ Sbjct: 235 ENANLSHVQTFGMAPTNDYYPLDIRVQADGTT----FKVNRWPNETFRMPLLGRHHVMNA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L +++ F R T+I+++YNA+P SM+AA+ + Sbjct: 291 LAAIAVARFAFVDIDHIKEGFLRLSVTKMRTEVIKRSDGVTIINDAYNASPTSMRAALEL 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q++ + + IA++GDM E+GE +FH + E++ I +V G A+ + Sbjct: 351 LGQLTGYRKK--IAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLTYGERAKAIAERAS 408 Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + V + L ++ + GDV+++K+S +I+LL Sbjct: 409 KRFSEGRVRAYDDKSELAADVRGIIEAGDVILLKASRGMKLEEIISLL 456 >gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola sp. JR] gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] Length = 458 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 204/464 (43%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ AI+ + + DSR I P F A+KG +D HDF+ A+Q G Sbjct: 4 MTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V+ M + I VDD L AL +LA R + ++A+TGS GKTTTK+ Sbjct: 64 AHGVIVSR-MQHDLPDGDI--LLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ L + +G++NN IG+PLTL + + E+GM LGEI FL + P Sbjct: 121 MISALLETKYLVLKTLGNFNNEIGLPLTLLGLDESHGAVVVEMGMRGLGEIDFLARIACP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 VIT I HL +E IA AK E+ + G LN DD + + A I Sbjct: 181 TAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVLNGDDPWQRKYAHLTRAKVI 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 AD + V + G H N L + + Sbjct: 241 FYGMDHSNHVYADNIKCNMGA---GASFTVIRDKIAKVFHLPVPGRHNIYNALAAITVGL 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + ++ L R ++ +I+++YNANPAS KAA+ +L+++ Sbjct: 298 QEGLSWEMCMEGLQNVVLSGMRL----QIIDCNGLKIINDTYNANPASSKAAVRILAEMP 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G+++AVLGDM E+G+ + H ++ E + I + G L + +A + Sbjct: 354 --CAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVTVGELALHIAEAAKAAGMD 411 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +++ S + + + L GD+V+VK S +++ + Sbjct: 412 RKNIYVSRNNNEALEILNNILKAGDLVLVKGSRGMKMEKIVEGI 455 >gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 468 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 120/475 (25%), Positives = 200/475 (42%), Gaps = 19/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + +++A G + P + GIS D+R+I + F A++G +DGH FI A Sbjct: 1 MEPI-SLSKIIEATGGTLLSGTPDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA +V+ ++ + + V D L L +A R +IA+TGS GKT Sbjct: 60 FKKGAIGAIVSREVESKNI-----IIKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ KT GSYNN +GVPLTL M + E+ + LG I+ L Sbjct: 115 TTKEMLGYILTREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGGIKRLCE 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P + V+T I HL E + K+E+ E L + G LN DD + +K Sbjct: 175 IAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLKMKEI-- 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K I +FG ++F + + + + + Sbjct: 233 -SRTKRIVTFGVENKSEFSASNIRVGDTFLEFTLNNNYRVKLNTISYCNVYNGLAAIAVS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAA 356 +V L+ + I F R N+ +I++ YNANP SM+ A Sbjct: 292 HVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNANPQSMQEA 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + + +++ + IA+LG+M E+GE + FH + ++ + + G + Sbjct: 352 LVAVGKMNSYTNK--IAILGEMLELGEKAPEFHYQIGKICADCGFDMLITVGDLAQYMAH 409 Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ S + L GD+V++K S ++ L + Sbjct: 410 GAEDEGMPRENIFVSVNNVEASDRLLRILRPGDIVLIKGSRGMKMEEIVERLRKR 464 >gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] Length = 473 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 204/472 (43%), Positives = 299/472 (63%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ AI G++IG +P+ +GISIDSR++ + FF IKG H DGHDF + A Sbjct: 1 MKALWDKQALITAIDGYAIGEIPET-FSGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA +++V + +A + +S P+ V DVL AL KLA AAR RSKA IIA+TGSVGKT Sbjct: 60 YERGAAVLIVAENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE+L L+++ K +A S NNH GVPLTLARMPV+ ++G+FE+GM+H EIR L Sbjct: 120 TTKEVLKQVLATVGKVHANSASLNNHWGVPLTLARMPVESNYGVFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT I+ AH+ F +EEIA AKAEIFEGL++ G LN DD FF L K+ Sbjct: 180 LVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADDDFFPYLVQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +K I SFG++KN+D+Q + + ++ S M V + G+ + G H+ QN L + Sbjct: 240 QCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + D++ + +LS F P++GRG RYR +L G + + SYNANPASM+AA+ + Sbjct: 300 AACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ EGRRIA+LGDM E+G S+ H DL + + L + V+L G + L L Sbjct: 360 LAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFLFGEAMKFLATDLA 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + I + + +GD++++KSS+S +++ LL+ + + Sbjct: 420 AYVKVHYAENIEKILPLILAEISNGDLLMIKSSHSLYSSDIVSALLDRYKVV 471 >gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 458 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458 >gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 442 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 209/452 (46%), Gaps = 18/452 (3%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P + G S+DSR + + F + G DGH+FI A+ GA +VN D+ S Sbjct: 2 GDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRH 61 Query: 81 LSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 P V V+D L AL ++A R + +++A+TGS+GKTTTK+M+ L+ Sbjct: 62 SVHPPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSILK 121 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G+ N+ IG+PL L + + E+GM++ GEI L L RP++ VIT IA +H+ Sbjct: 122 THGNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRIAESHIE 181 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 +E IA AK E+ E L GT LN DD++ L++K + + G D Sbjct: 182 KLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPGEVLYYGLTDG-----DL 236 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + +++ ++ KS ++ IG H N L + + + D+ +I+AL Sbjct: 237 SAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGLDLTQSIRALE 296 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R +ID++YNAN S AA VL+ + + RIAVLGDM Sbjct: 297 GFTGTSMRN----QIKYHKDMIIIDDTYNANVQSTLAAFDVLTNLPLNR---RIAVLGDM 349 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLF 434 E+G+ ++ H + E ++ G ++A + + + Sbjct: 350 FELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKLGMPEHQNIHVADREQAI 409 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I + GD ++VK S +++N LL+ Sbjct: 410 QRILQIVKSGDGILVKGSRGMAMEKIVNSLLK 441 >gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. 18P13] Length = 454 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 138/467 (29%), Positives = 212/467 (45%), Gaps = 20/467 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ QA+ G P V IS D+R+I P F A++G +DGH F A ++GA Sbjct: 5 TLTEIAQAVGGTLSNC-PDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ + + P VD AL A R + + + +TGSVGKTTTK M Sbjct: 64 VAVISDHVIP------DCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + LS+ KT G+ NN IG+P TL + + E+GMS GEI L+ P Sbjct: 118 IALVLSTHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPS 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I +H++ E I AK EI +G+ + +N DD + LK L Sbjct: 178 IGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPLK---TTLSRP 234 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K+ AD + + + + ++ QG V IG H N I + Sbjct: 235 VYTYGIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNGAAAFCIGML 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + AL + P + T+I + YNA+P SM+A++SVL Q+S Sbjct: 295 AGMEPEEIAGALRTYQP----DGMRQNIQQIDDKTVILDCYNASPDSMRASLSVLGQLSV 350 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHV 424 GRRI VLGDM E+GE S+ H + +++ + ++ G + +A + + V Sbjct: 351 --TGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRYIAEEAAKQGVPV 408 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + + L ++ SL GD V+ K+S + L FPA+ Sbjct: 409 QHFTEKEALTEQLRRSLQPGDAVLFKASRGMQLESVAKAL---FPAL 452 >gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] Length = 457 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 17/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + +A G I + + I IDSR + + F AI G DGH+FI A Sbjct: 1 MESL-TLAQIAEAASGKIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 V+ GA V+V+ + ++ V VDD AL +A R++ K I AITGSVGK Sbjct: 60 VENGAKAVIVDRQINDY---SNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+M+ L+ KT G+YNN IG+PLTL R+ +F + E+GMS GEI L Sbjct: 117 TSTKDMIAAVLAQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLA 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP IAVIT + PAH+ IE +A+AK E+ + L+K+GT LNYD+ + + Sbjct: 177 ELARPQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAENF 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ++ I +S G E+ + Q + ++ + G H N L Sbjct: 237 NSKLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGK--KLKFYLNKPGKHNIYNALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + LS + R + +I++SYNANP S++AA+ V Sbjct: 295 IAIGFLNNMNPKGIQDGLSK---IDFSDLRMEIKELENGAIVINDSYNANPISVRAALDV 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+++ + IAVL M E+G++ + H+++ E ++ NI + G + + Sbjct: 352 LAEMKGKRK---IAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLITVGEIAELIAEGAE 408 Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 R+ ++ F++ +L D++++K S S +++ L Sbjct: 409 RTAMPVEKIYSFADKASTLKFLKDNLKKDDLLLIKGSRSNQMEKIVAEL 457 >gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 222/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + + + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458 >gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus cereus Q1] gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus Q1] gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 219/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLIKASRGMKLEEVITMLK 458 >gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 461 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 138/472 (29%), Positives = 224/472 (47%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G I + V GIS DSR + E F +KG YDG DF+ A Sbjct: 1 MMELL-IAEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + KGA V+ D + + V V+D L AL+K+A R + +A+TGS GK Sbjct: 60 MTKGAKAVLTARLDNIEYLRDFPFNVIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS K G++NN IG+PLT+ + + E+GMS GEIR L Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLK 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++V+P +AV T I AH+ E I AK E+ E ++ I LN DD + + Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ + ++ + ++ + E+ G H N L Sbjct: 240 SSKYYRYGIKNGE-----IKACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + DVD + L F P GK + +G +ID++YNANP SMKAA++V Sbjct: 295 ICVGLEFGVDVDDMAEVLKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + IAVLGDM E+GE S H ++ ++++ +I + SG + + Sbjct: 351 LRDFPGKRK---IAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGNTSKYIAEESK 407 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T + + ++ + +GD+++VK S +++ L E Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQER 459 >gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] Length = 458 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458 >gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] Length = 458 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458 >gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] Length = 456 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 216/466 (46%), Gaps = 18/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ G I P VNG+ DSR + F A++G DGHDF L A+++G Sbjct: 4 YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++V + V V D + AL +LA R R ++A+TGS GKT+TK+ Sbjct: 64 ATALLVTK---TVTVPPQVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ KT G+YNN +G+PLTL + + E+GM GEI L L +P Sbjct: 121 MIAAVLNTRYKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLLARLAKP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I AHL ++ IA+AKAE+ + + G LN D ++ Sbjct: 181 TGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRNQVSRCQGQ-- 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ + + D R + ++ G + E+ G H N + +G+ Sbjct: 239 --VWFYSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVGL 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L ++ L+ R + T+I++ YNANP+S KAA+ VL++++ Sbjct: 297 RLGIPFTDIVRGLAQVELTGMRL----EIIKANNMTVINDVYNANPSSTKAALKVLAEVA 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 P GR+IAVLG+M E+G L++S H ++ E +L ++ + G + Sbjct: 353 P---GRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKGGLP 409 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VH+ + ++ + GD ++VK S S ++ L+ Sbjct: 410 GDRVHHCDNNKLAIEVLRQVMQPGDTILVKGSRSMHMEEIVQALVN 455 >gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] Length = 503 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 211/472 (44%), Positives = 287/472 (60%), Gaps = 3/472 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN LW + A+ +G +P ++GISID+R++ +AFFAI+G +DGHDF+ Sbjct: 1 MNEALWDVDAMAAAMHARPLGDLP-AAISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA L VV+ + ++G + P+ VDDVL A+++LA AAR RSKATI+A+TGSVGK Sbjct: 60 ATKAGAALHVVSEQKLPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE L L++ K +A S+NNH GVPL+LAR+P D F IFE+GM+H GEIR L Sbjct: 120 TTTKEALRHGLAAEGKVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEIRPLV 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LVRPH+A+IT IAPAHL +F ++EIA AKAEIFEGL GT LN DD L + Sbjct: 180 KLVRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPLATMA 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+ I +FG+S ADF+L + E S ME + G+++ V G HMAQN+L Sbjct: 240 RKAGVTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAV 299 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAIS 358 LG S+ AD+ AL + +GRG R + G + + SYNANPASM+AA+ Sbjct: 300 LGAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALD 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VLS P GRRIAVLGDM E+G+ + H L E + + V+L+G + AL D L Sbjct: 360 VLSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGDEMKALDDVL 419 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + E L + ++ GDVV+VK+S S GF L++ LL +P Sbjct: 420 ESRVRREWHENAGELLESLLKTMRTGDVVMVKASKSIGFSPLVDKLLALYPP 471 >gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 458 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458 >gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] Length = 459 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 138/463 (29%), Positives = 220/463 (47%), Gaps = 13/463 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+ +AI+G+ I P + G+S++SR + FFA+KG +DGHDF+ A++ GA Sbjct: 5 LLDIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGAL 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VV+ + G + V DV AL LA R R K ++ +TGSVGKTTTK++ Sbjct: 65 AAVVSRPVSLPQGLGERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLT 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + +T G+YNN IGVPLTL R+ + + E+ M +LGEI L + P Sbjct: 125 ATCLEARFQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELASIALPTC 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +I + P HL N +E IA AK E+F+ +++ G + +N D+ K + Sbjct: 185 GIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNPLLVEAAEKYAVKKV-- 242 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 FG N D +L SE++ ++ L G++ E G H+A N++ G+ L Sbjct: 243 --RFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFCLPFPGSHLAYNVIAAAGVAVRL 300 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D+ + F P R T+ID+ YNANP SMKA + VLS ++ Sbjct: 301 GVDLADIQSKIRSFSPSSRRLNIKTGLGG---ITIIDDCYNANPVSMKAGLEVLSDVAA- 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422 R+AVLGDM E+G H ++ + + + G + +A + Sbjct: 357 -GRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGELARHIGEAAKEAGLDKE 415 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + +++S L VV++K+S ++ L Sbjct: 416 RILHFSDKELAIAYLKSDLPAEAVVLIKASRGMHMEDIVQELE 458 >gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 458 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458 >gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] Length = 458 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458 >gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] Length = 458 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458 >gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] Length = 487 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 191/475 (40%), Positives = 268/475 (56%), Gaps = 10/475 (2%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MN PLWT L A G IG V G SID+RS+ P + FFAI+G DGHDF+ Sbjct: 1 MNDAPLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113 A+ KGAG VV + PV V D VL A+ +L +AAR R+ A IIA+ Sbjct: 59 AALDKGAGAAVVAEVRAKEFEGVG-PVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT TKE L LS+ T+A + SYNNH GVPLTL RMP D FG+FE+GM+H Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGA 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L A + A + +FG+ + AD + + S ++ + G + G H+A Sbjct: 238 RLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVA 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + L AD+ A +L+ P GRG+R + G L+DESYNANPAS+ Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA++ L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ G + Sbjct: 358 RAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +ALP ++ + T +G+ + ++L GD V+VK SNS R++ + + Sbjct: 418 LFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] Length = 459 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 134/463 (28%), Positives = 218/463 (47%), Gaps = 18/463 (3%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +L +A+ G + P G++ DSR + F + G +DGHD+I + GA + Sbjct: 8 ELAEAVTGKLLWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVC 67 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + + G ++ VDD AL LA R + ++ ITGSVGKT+TK+M++ Sbjct: 68 LTSKPIPEVAGCSAV---LVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSC 124 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 LS G++NN IG+PLT+ + + + E+GMS GEI LT + RP IA+ Sbjct: 125 VLSQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRLTAIARPDIAI 184 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I +H+ E I AK EI EGL K G + LN DD + LK K Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGKL----PFRTV 240 Query: 249 SFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +G +D+ ++ E + E+ + V G H N L + + Sbjct: 241 LYGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIEMK 300 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ I + F P G + +N +I+++YNA+P SM+AAI+VL +IS Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISS-- 354 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-- 425 R IAVLGDM EMG +S+ H + E + I+++ G + A+ S + Sbjct: 355 GSRSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITVGQDSGMISQAVADSGNGEIK 414 Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E+ +I ++ GD +++K S + + +++ Sbjct: 415 LRHFESNKEALKYILGIVMPGDYILIKGSRGMKMEEIADGIMK 457 >gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 457 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 136/470 (28%), Positives = 223/470 (47%), Gaps = 21/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + +++ A G + ++GIS DSR+I E F +KG +++G F+ A Sbjct: 1 MI--LSVKEIIDATSGKLLSGDINSTISGISTDSRTIKEGELFIPLKGENFNGEMFVEDA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ G + + V ++G + PV VD+ AL+K+A R + + IA+TGS GKT Sbjct: 59 LKIG-SASLTES--VNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ LS G++NN IG+PLT+ R+ D I E+GMS GEIR L + Sbjct: 116 TTKDMIYDVLSMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIRRLKN 175 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P++AV T I AH+ E I AK+E+ E ++ T+ LN DD L K Sbjct: 176 IADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLTNK-- 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++G N D + + E +V + G M+V + G H N L + Sbjct: 234 --KGPQYITYGI-DNGDVKAFDIEYKEESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + + KAL+ F P R L+ +I+++YNANP SM + L Sbjct: 291 CIGIKFGVNKEDMRKALAEFQPSAMRL----NILDVSGIKVINDAYNANPGSM---KAAL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + + + R++AVLG+M E+GE S H ++ + + NI + G + + + Sbjct: 344 SVLKEYKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVLITVGEFASKIAEGAIK 403 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S +V + + I+ + + DV ++K S ++ L E Sbjct: 404 SGMDVENVMICKNNVEAYEKIKKIMRNNDVFLIKGSRGMKMEEIVKFLQE 453 >gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] Length = 458 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458 >gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] Length = 458 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT + AHL + E IA AK EI GL++ G N D+ + + Sbjct: 183 NAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458 >gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Ames] gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A1055] gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Kruger B] gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Vollum] gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Australia 94] gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus anthracis CI] gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Ames] gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458 >gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] Length = 458 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + L +Q+ + + DVV+VK+S +I +L Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458 >gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] Length = 455 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 133/464 (28%), Positives = 215/464 (46%), Gaps = 15/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 TF + Q G PQG V + DSRS+ + F A++G +DGH FI A ++GA Sbjct: 5 TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V + V V + L AL +L R +I +TGS GKT+TK++ Sbjct: 65 AGAIVEE--FPAELPPGFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDL 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L + G+ NNHIG+PLTL R G+FE+GM+H GEI L + P Sbjct: 123 TASVLGENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPE 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +IT I AH+ E IA K + E L +GT+ L+ +D F + A++ A + Sbjct: 183 VGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAARTKADVVL 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G+ +D + + + + +G++ G HM +N ++ + Sbjct: 243 AGINKGEVFASDLR-----PSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAAGRA 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ LS +GR ++ Q +ID++YNANP S+ AA+ L+ + Sbjct: 298 FGLSLEECAAGLSKLRLTKGRLEQKMIRGIQ----VIDDTYNANPDSVAAALRTLASMPA 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--H 423 GRRIAVLG M E+G ++ H + EV + ++ V G + +A R Sbjct: 354 V--GRRIAVLGRMGELGVEAERGHRLVGEVAAQTHVDSVIGVGEEAQWITEAAWRGGVEK 411 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E+ + ++ GD+V++K S S R++ LL + Sbjct: 412 VVRVESTEEATKVLRDLAKAGDLVLIKGSRSARMERIVEGLLAQ 455 >gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 465 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 231/471 (49%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ T D+L+A +G I + V+ IS DSR+I + F A+KG +DGH+F+ A Sbjct: 1 MSLNLTVEDILKATKGILIKGNFKDKVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ D+ + + V D L AL +A A +I ITGS GKT Sbjct: 61 ILKGAKGVIVSRDVNLEDKAF---IIKVQDTLKALQDIANYYLKTLNAKVIGITGSSGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK ++ L I K Y ++NN IGVPL++ DVDF + E+ M GEI L+ Sbjct: 118 TTKNLVGRLLKLIGKVYVSKENFNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLLSK 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P I VIT I AH+ E I AKAEIF+ +++ G LN DDSF + + H Sbjct: 178 IAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYERLH 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 Y+FG + +D + + E + GK + + ++ +N+L Sbjct: 238 IKK----YTFGFEEGSDLRGLILDKGKESYTLGLYFPDGKRLTLSLPVYPLNIYRNLLSA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ ++ + +K F + R R N+ +ID++YNANP SMK AI Sbjct: 294 LLVLWSISPESIYRVKEDFDFTLPKQRLDVKR---NKDGLVIIDDTYNANPDSMKTAIEY 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GR++A+LGDM E+G S H ++ E + NI + L G + D Sbjct: 351 LELLDV--PGRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVLYGQEMKKALDEFE 408 Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + VH+S+ + + ++ SL D V++K S + + L +E+ Sbjct: 409 KIDWSKVHWSDNPEEIKSILRRSLQPKDTVLIKGSRAMRMEDFVKFLEDEY 459 >gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] Length = 460 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 133/460 (28%), Positives = 209/460 (45%), Gaps = 14/460 (3%) Query: 6 TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + G V+G+S D+R+I + + G ++GH F+ A QKG Sbjct: 5 TVQQIAEMTGGRYANPEWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ S+P VDD L AL +LA R + ++ +TGS GKTTTK+ Sbjct: 65 AAAVLWAE--AEGTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ LSS + G+ NNHIGVPLTL + D + E+GMS GEI LT + RP Sbjct: 123 MIAALLSSQYRVQKTEGNLNNHIGVPLTLLALEEGTDIAVVEMGMSGFGEIEQLTTIARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + AVIT I AHL E IA AK EI GL+ G + D+ L Sbjct: 183 NAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYHGDEPLLAELV--PSLPLP 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG+ ++ D+ + + + V + + +G H N L + + Sbjct: 241 QHVVTFGEGEDNDYYPTTVRIEAAGTS-FVINELPRQTLFIPVLGKHHVYNALAAIAVAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + ALS + R + FT+I+++YNA+P SM+AA+ +L+++ Sbjct: 300 FFGVSWENIAAALSR---LQVTRMRTEVVKTKRGFTVINDAYNASPTSMRAALMLLTELD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRS 421 + + IAVLGDM E+G+ FH + E+L + +V+ G + A Sbjct: 357 GYRKK--IAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYGPLARHIATAATPFFDQ 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V + L + S D+V++K+S L+ Sbjct: 415 GQVKAFDDKAALAEAVLSVATPDDIVLLKASRGMRLEELL 454 >gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] Length = 473 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 188/469 (40%), Positives = 256/469 (54%), Gaps = 12/469 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A G S G G+SID+R+I P + F A+ DGH+F+ A Sbjct: 1 MI-LWTSADAASATGGTSQGT---WTATGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 QKGA +VN G + VDDVL AL +L AAR R++A +IAITGSVGKT Sbjct: 56 FQKGASAALVNH---VPDGMDAAKCLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K+ML ALS K +A + SYNNH GVPLTL+RMPVD D+ + E+GMS GEI L+ Sbjct: 113 TVKDMLKQALSGQGKIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLSR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+A+ITTIAPAHL F IE IA KA IFEGLE G + D +L + Sbjct: 173 MARPHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILAR-AA 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +FG+++ AD +L + + M + G H A N + L Sbjct: 232 VAHAAEVVTFGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT---LIDESYNANPASMKAAI 357 V+ AD A ALS + P EGRG+R R L++ LID+++NANP S+ A + Sbjct: 292 CAVAASGADTTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ I+P GRRIAVLGDM E+G+ H D+A + ++ + V G ++ L A Sbjct: 352 EVLAAITPERGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCGPLMVHLDAA 411 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 LP + ++ET L + +L GDVV+VK S +++ L + Sbjct: 412 LPGAKRGEHTETAQDLCRAVPRTLRPGDVVLVKGSKGSRVSLVVDALRK 460 >gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] Length = 456 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 203/464 (43%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + + + I I + G+ D+R+I P F I G ++GHDF+ A+ +G Sbjct: 5 SVSTMAKWLNDADIINISEDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + +T + +P+ V+D + AL +LA A +IA+TGS GKTTTK+ Sbjct: 65 AKAALWSTK--EADAPEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ ++ K G++NNHIG+PLT+ + D + I E+GMS GEI L+ + P Sbjct: 123 MMAAVCETLWKVQKTQGNFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A+IT I +HL + E IA AK EI +GL+ + + D+ L + Sbjct: 183 DAAIITNIGESHLQDLGSRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQ----SP 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG + ++ + V + A N+L + +++ Sbjct: 239 HPLLTFGHRDTNRYFPQEIVHEPNGTRFNVGGNEIGSYFITV----LGAHNVLNAIAVIA 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K F + G R T+I+++YNA+P S+KAA+ ++ + Sbjct: 295 TARWFGIEDHKINLGFQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELVQDMK 354 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421 H VLGDM E+GE + FH D ++ I+ V+ G ++ Sbjct: 355 GHQNK--YVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFTYGTLSEHIQKGALRRFEE 412 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L ++S L D+V++K S + LL Sbjct: 413 ERAMHFSDKPALISHLKSVLKSDDLVLIKGSRGMKLEEVAEALL 456 >gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] Length = 450 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 131/465 (28%), Positives = 209/465 (44%), Gaps = 19/465 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A G I + G S DSR ++P + I G +DGHDFI +A + G Sbjct: 1 MRVSEIVEATGGKLICGNSNQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ D I + V D L AL +A R K ++ ITGSVGKT+T++ Sbjct: 61 ASAVISGRD----IDDSEHIIIKVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ + KT G+YNN IG+PLT+ R+ D + E+GM+HL E+ L+ + P Sbjct: 117 MVYSVIKQQYKTLKTEGNYNNAIGLPLTILRL-KDEQVMVLEMGMNHLKEMEELSMIACP 175 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I+ IT + AH+ E I AK EI G+ + +N D+ + +G Sbjct: 176 DISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTV-----EVGR 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G DF+ E S + +GK V G H N L+ + I Sbjct: 231 LNLIRVGIDNGVDFKANNVVLSDEGSTFNFEYKGKVYFVDVPVPGKHFVMNALIAIAIGL 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + IK + F R N TLID +YNA+ SMK++I VL+ + Sbjct: 291 QLDISPEQCIKGVKEFELTRNRMDIVELKNN---ITLIDGTYNASEDSMKSSIDVLATYT 347 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422 IAVL DM E+G+ S+ H ++ ++ I + G + DA ++ Sbjct: 348 RRK----IAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAVGKESKYIIDAASKAGVK 403 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + Y + + + ++ + DV++ K SN ++ L+ E+ Sbjct: 404 QICYCNSNEEVINYLGKIIQSNDVILFKGSNGMKLGNVVALMKEK 448 >gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] Length = 477 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 216/469 (46%), Positives = 308/469 (65%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+I EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTSSDLLGAMNGRPVGNLPEG-ITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AAR RS A IIA+TGSVGKT Sbjct: 60 LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A + S+NNH GVPLTLARMP D+G+FE+GM+H GEIR LT Sbjct: 120 TTKEMLRHMLSPLGRVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEIRPLTR 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ +++IA+AKAEIFEG+ G +N D + +ELL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELLEKAAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ ++ FG + ++F+L ++ +E S + + G+++E+ G H+A+N L + Sbjct: 240 TAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGAPGRHIAENALAAI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ AD D +L+ P++GRG R+R + G+ TLIDESYNANPASM+AAI++L Sbjct: 300 AAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNANPASMRAAITLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIA+LGDM EMGE S + H LA + I+ VWL+G + L+DALP Sbjct: 360 RDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTGTEMAHLRDALPS 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + + + L + ++ GDVV+VKSS S G +++ LL+ P Sbjct: 420 EVSVVHRDLVSDLTAYALGAVAAGDVVMVKSSKSTGCAKIVQALLDAHP 468 >gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] Length = 458 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVIMMLK 458 >gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] Length = 454 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 209/470 (44%), Gaps = 21/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A++G G V IS D+R+I F A+KG ++DGHDF A Sbjct: 1 MEKLM-LSEIIEAVRGS-YGYPANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA VV + VD AL A R + ++ ITGSVGKT Sbjct: 59 MELGAIAVVTERPVD------GARCLIVDSTAQALLDSASYYRSKFDIPLVGITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ LS KT ++NN +G+P TL + + E+GM+H GEI ++ Sbjct: 113 TTKEMIYSVLSRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMST 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P I VIT I +H+ N E I AK EI +G + L DD LL Sbjct: 173 SCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDDK---LLAKAEI 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + Y K+ D S+ + + + + + +G H +N L Sbjct: 230 YGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARINCLGEHNVKNALAAF 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + I L+ F P + + + T + + YNA P SMKA++SVL Sbjct: 290 CAGAAAGMENEDIIAGLADFRP----EGMRQNIITENGMTFVLDCYNAAPDSMKASLSVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQIS GRR AVLGDM E+G+ + +H + E + + G + + Sbjct: 346 SQISVR--GRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKNSTYYIEGACD 403 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + E+ + L +++++L +GD V+ K S + + + Sbjct: 404 KGFDRENTKHFESHEELVEYLKANLKEGDAVLFKGSRGMKLEEVYEAIKQ 453 >gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 457 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 219/470 (46%), Gaps = 21/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T ++L A +G + V+GIS DSR+I P + F +KG ++G FI A Sbjct: 1 MI--LTVKEILDATEGKLLSGDINICVSGISTDSRTIKPGDLFIPLKGERFNGEKFIDDA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G + + I + P+ V+D AL+++A R + IA+TGS GKT Sbjct: 59 LNVG-SASLTES--TNCIRHDNKPIIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ LS IG++NN IG+PLTL + D D + E+GMS GEIR L + Sbjct: 116 TTKDMIYDVLSMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEIRRLKN 175 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P++AV T I AH+ E I AK+E+ E + T+ +N DD + K Sbjct: 176 IASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEK-- 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++G N D + + E S +V + G ++V + G H N L + Sbjct: 234 --KGPKFVTYGI-NNGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + + KAL+ F P R ++ +I++ YNANP+SM + L Sbjct: 291 CIGIQFDVNKEDIRKALAKFQPSAMRL----NIIDVAGIKIINDVYNANPSSM---KAAL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418 S + + E R++AVLG+M E+G+ H ++ E + +I + G + L + D Sbjct: 344 SVLGGYTERRKVAVLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYALKIADGAIE 403 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +V I++ + + D+ +VK S ++ L E Sbjct: 404 KGMNNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGMEMEEIVKFLQE 453 >gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 1313] Length = 457 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 145/462 (31%), Positives = 225/462 (48%), Gaps = 18/462 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++++A+ G I IS DSR+I + F + G +DGH++I A++ GA Sbjct: 7 EEVVKAVGGTLISGEVNTVFYNISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGALG 66 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + G + + V D L AL LAV R + K + ITGSVGKT+TKEM+ Sbjct: 67 SLTQKETEPFPGKV---LIKVSDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMVA 123 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS K G++NN IGVPLT+ + + + E+GMS GEI LT +V+P IA Sbjct: 124 AVLSKGFKVLKNQGNFNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIA 183 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT I +H+ I AK EIFEGL + G LN DD L + L Sbjct: 184 IITNIGVSHIEKLGSKNNILKAKMEIFEGLNEKGLAILNGDDKLLYGL----NNLLKFRT 239 Query: 248 YSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +G + D + + + S +++++GK V G H N L + + L Sbjct: 240 VFYGMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIEL 299 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + ++ + F P GK +N +I+++YNA+P SM+AAI VL IS Sbjct: 300 GIPPEKIVEGIEEFSP----GKMRLDIINYNGLKIINDAYNASPQSMEAAIDVLKDIS-- 353 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSI 422 GEGR AVLGDM E+GE S+S H+++ + + I ++ G + + +A + Sbjct: 354 GEGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGEYRSNIVRGAVEAGAKEE 413 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + F++ + GDV++VK S ++N+L Sbjct: 414 KVFEFKDNMDAAKFLKEFVKSGDVLLVKGSRGMKMEEIVNIL 455 >gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] Length = 454 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 207/470 (44%), Gaps = 21/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L +++QA++G G V IS D+R+I F A+KG ++DGHDF A Sbjct: 1 MEKLM-LSEIIQAVRGS-YGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA VV + VD AL A R R ++ ITGSVGKT Sbjct: 59 MEAGAVAVVTERPVD------GARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ +S KT ++NN +G+P TL + + E+GM+H GEI ++ Sbjct: 113 TTKEMIWSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMST 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P + VIT I +H+ N E I AK EI +G + L+ DD +L Sbjct: 173 SCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDD---RILSKVQV 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K Y K++D S+ + + + + +G H +N L Sbjct: 230 YGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAF 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L D I L+ F P + + + T I + YNA P SMKA++SVL Sbjct: 290 CVGAALGMDNADIIAGLADFRP----EGMRQNIIEENGVTYILDCYNAAPDSMKASLSVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+S GRRIAVLGDM E+G+ S +H + E + + G + + Sbjct: 346 GQVSVR--GRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNYYIEGACD 403 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++ + L ++ L +GD V+ K S + + + Sbjct: 404 KGFDRANTAHFDSREELAEHLKGILKEGDAVLFKGSRGMKLEEVYEAIKQ 453 >gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] Length = 457 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 131/465 (28%), Positives = 221/465 (47%), Gaps = 13/465 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L F +++ A+ G IS D+R I F A+KG +++ +D+I+ A K Sbjct: 3 LLKFEEIVNAVGGKVHINSGNHKYTNISTDTRKITKDSIFIALKGDNFNANDYIVDASDK 62 Query: 64 GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L +V+ + S + + + V++ AL LA R + II ITGS GKT+T Sbjct: 63 GANLCIVDEINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++ ALSS K + G++NN +G+PL + + D + E+GMS+ EI L + Sbjct: 123 KDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFEEIHRLAKVA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P IA+IT I +H+ N E I AK EI + K + +N ++ + +K+ Sbjct: 183 KPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNKENDLLKNVKS----- 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + S G K+ D+ V + + G H N ++ + Sbjct: 238 NEYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGKHNILNSMLAIVA 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + D + + + + FT++D+SYNA+P SMKAAI V++ Sbjct: 298 GRSLDIEYDKLKQGIKNLS----VTSMRLDIVKKDGFTIVDDSYNASPDSMKAAIDVITT 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I + + IA+LG M E+G+ S FH ++AE NI + G A K+ ++ Sbjct: 354 IKGNRK---IAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVGEFNEAYKEGYNNNL 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T++ FI S+L + D+++VK+S S F ++N L ++ Sbjct: 411 NFKEFNTIEKAADFITSNLKEKDIILVKASRSMQFEYIVNKLKDK 455 >gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] Length = 455 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 207/465 (44%), Gaps = 19/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + ++G + G++ D+R + + F + G +++GH F+ A + G Sbjct: 5 TAKKIAEMVKGTLTDPTYENIVIQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ N V VDD LGAL +L+ A +I +TGS GKTTTK+ Sbjct: 65 VSAVLWNK--SEPNPPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML L + + + G++NNHIG+PLT+ MP D + + E+GMS GEI LT L P Sbjct: 123 MLHAVLQTQFRVHKTEGNFNNHIGLPLTVLSMPEDTEVAVLEMGMSGKGEIDLLTRLANP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL+K G + D+ Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYIGDEPLLNK------RSYS 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG + D+QL KQ + + I N+L + + Sbjct: 237 CRTKTFGADEGNDYQLEDVKQTEDGT-----HFSIKGIDKTFFIPVLGKHNVLNAIAAFA 291 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 T A + G R ++ ++I+++YNA+P SMKAAI ++ + Sbjct: 292 AGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASPTSMKAAIELIESM- 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G G+++ VLGDM E+G+L Q FH + V++ I +V+ G + R Sbjct: 351 -EGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYVFTYGKLGAFIAAGAHRHFDQ 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L + GD+++ K+S ++ L++ Sbjct: 410 ERVSHFNDKAELLQAVAEKAEKGDLILFKASRGMKLEEIVKDLMK 454 >gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis] gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 457 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 213/465 (45%), Gaps = 20/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + ++G Q ++G++ D+R + + F +KG +DGH F+ A + G Sbjct: 5 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + + + V VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 65 VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP + + + E+GMS GEI L+ L P Sbjct: 123 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL++ G + D+ + Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G + D+QL+ Q E + ++ + + G M + + Sbjct: 236 CQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAI-----A 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A + G R ++I+++YNA+P SMKAAI + + Sbjct: 291 AGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 349 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G G+++ VLGDM E+G+L ++FH + V+S I V+ G + + + Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 408 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L ++ + GD+++ K+S ++ L+E Sbjct: 409 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453 >gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] Length = 476 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 201/471 (42%), Positives = 277/471 (58%), Gaps = 3/471 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN PLWT D + G G + Q + GISIDSR+I EAFFAIKG +DGHDF+ Sbjct: 1 MNAPLWTRDDFIAGANGTPKGELGQ-DITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGT 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA + VV+ D + S+ S VDD L A+ +LAVA+R RS A I+A+TGSVGK Sbjct: 60 ALANGASVAVVSADKLDSLPSTG-RYLIVDDPLAAMERLAVASRARSNARIVAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L +AL K +A + S+NNH GVPLTLARMP DVDFG+FE+GMS GEI L Sbjct: 119 TGTKEALRLALGRSGKVHASVASFNNHWGVPLTLARMPADVDFGVFEIGMSAPGEITPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A ITT+ HL F +E IA AKAEIF+GLE G LN D++ F+LL + Sbjct: 179 RMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQFDLLMFLA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++ I +FG+++NAD ++ + S + ++ G+ + G H N L Sbjct: 239 KADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L ++ A +AL+ +GRG+ L +G L+DESYNANPASM+AA+SV Sbjct: 299 LTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GRRIAVLGDM E+GE H +L++ ++ + ++ G + L D +P Sbjct: 359 LGEAEITPPGRRIAVLGDMRELGEDGPKLHAELSDPVNEAGVEALFCVGPQMKQLWDRVP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + V Y+E L + + GDVV+VK S L+ L ++P Sbjct: 419 QGLRVMYAEQAADLQDHLLQEIRSGDVVMVKGSLGTRMGPLVEALKTDYPP 469 >gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. SMY] Length = 481 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 213/465 (45%), Gaps = 20/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + ++G Q ++G++ D+R + + F +KG +DGH F+ A + G Sbjct: 29 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 88 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + + + V VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 89 VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 146 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP + + + E+GMS GEI L+ L P Sbjct: 147 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 206 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL++ G + D+ + Sbjct: 207 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 259 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G + D+QL+ Q E + ++ + + G M + + Sbjct: 260 CQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAI-----A 314 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A + G R ++I+++YNA+P SMKAAI + + Sbjct: 315 AGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 373 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G G+++ VLGDM E+G+L ++FH + V+S I V+ G + + + Sbjct: 374 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 432 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L ++ + GD+++ K+S ++ L+E Sbjct: 433 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 477 >gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens TA208] gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens LL3] Length = 456 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 212/466 (45%), Gaps = 19/466 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + ++G V Q + G + D+R++ + F +KG H++GH F+ A +KG Sbjct: 5 TVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + V VDD L AL KLA A +I +TGS GKTTTK+ Sbjct: 65 VSAVLWDR--SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML L + + + G++NNHIG+PLT+ MP D + + E+GMS GEI FL+ L P Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL + G +F D+ Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEPLLRE------KAYT 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G+ + D +L++ KQ E ++ I N++ +G + Sbjct: 237 CRTTTYGEGADNDLRLKEIKQAEEGTYF-----TIDGIDRSFFIPVLGRHNVMNAMGAYA 291 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 T A + G R + ++++++YNA+P SMKAAI ++ + Sbjct: 292 AGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + + VLGDM E+G+ ++FH + ++ I HV+ G + D + Sbjct: 352 GYRKKM--LVLGDMLELGDEEKAFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEE 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + L I+ + GD+++ K+S + LLE+ Sbjct: 410 GRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVKDLLEK 455 >gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] Length = 457 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 214/465 (46%), Gaps = 20/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + ++G Q ++G++ D+R + + F +KG +DGH F+ A + G Sbjct: 5 TVKNIAEMVEGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + + + V VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 65 VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP + + + E+GMS GEI L+ L P Sbjct: 123 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL++ G + D+ + Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G + D+QL+ Q E + ++ K+ + G M + + Sbjct: 236 CQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIEKTFFIPILGKHNVMNAMAAI-----A 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A + G R ++I+++YNA+P SMKAAI + + Sbjct: 291 AGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 349 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G G+++ VLGDM E+G+L ++FH + V+S I V+ G + + + Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 408 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L ++ + GD+++ K+S ++ L+E Sbjct: 409 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453 >gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] Length = 460 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 214/468 (45%), Gaps = 16/468 (3%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T L I G + G+SID+R+I + IKG ++GH F+ A++ G Sbjct: 5 TLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + N D I V VDD L AL +LA + R ++ ITGS GKTT K+ Sbjct: 65 AVATLWNKD--EENPPTDISVILVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + G++NNHIG+PLT+ R+ D + E+GMS GEI FL++L P Sbjct: 123 MVKAVLDTTYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I +HL + + IA AK EI GL TG + N D+ L + Sbjct: 183 DVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEP----LLTSRVVNPV 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG S+ D + V + + +G H N L + + Sbjct: 239 FETMTFGSSEQNDLYPSAISAEELGTTFTVSRE-TTYSFFIPVLGKHNVHNALSAIAVGH 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D +T K L + R T I+++YNA+P S+KAAI+++ + Sbjct: 298 YFGLDNETIAKGLKE---LKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL- 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G ++I VLGDM E+G+ + FH ++ E + I +V G + ++ + Sbjct: 354 -EGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAE 412 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 V + E D L + + DVV+VK+S +I+ ++ + P Sbjct: 413 DKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460 >gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] Length = 454 Score = 279 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 133/463 (28%), Positives = 219/463 (47%), Gaps = 17/463 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q G + ++G++ D+R ++ F + G H++GH F AV+ G Sbjct: 5 TVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ N + +PV VDD L AL +LA + ++ ITGS GKTTTK+ Sbjct: 65 AAAVLWNQK--ETNPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP + + E+GMS GEI FL++L P Sbjct: 123 MIHSVLQTTYQVHKTDGNFNNHIGLPLTILSMPKGTEIAVLEMGMSAKGEIEFLSNLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI +GL++ GT + D+ L + Sbjct: 183 DAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEP----LIRERATQLS 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG++ + D ++ Q +E + Q++G + + +G H +N L + I Sbjct: 239 QQVKTFGEADDCDIKVTHINQLAEGTE--FQVEGYAQGFLIPVLGKHNVKNALAAIAIGQ 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L R + ++ T+I+++YNA+P SMKAAI ++ + Sbjct: 297 HFGLNERQIAQGLMQTKLTGMRLELFKTEKG---ITVINDAYNASPTSMKAAIDLVGDMD 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 I VLGDM EMG +++H +L + I HV G + + +S Sbjct: 354 GFANR--ILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGD 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + L + DVV+VK+S +I L Sbjct: 412 TRVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVITAL 454 >gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 466 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 16/466 (3%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ G V G+ DSR I F + G +DGHDF +Q G Sbjct: 5 NLAEIAAMCGGQIREAGDAGIVVQGVVTDSRQITKGCLFVPLAGERFDGHDFASDCLQAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG + S G+ P VDD L AL LA + + A ++ ITGS GKTTTK+ Sbjct: 65 AGACLW----ALSKGTPPGPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKD 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS+ K + G++NNHIG+PLT+ MP D + + E+GMS GEI L+ + P Sbjct: 121 LVYALLSTTYKVHKTKGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV+T I +HL EEIA AK EI G++ G N D+ + A+ + Sbjct: 181 ETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLAEPSTVKP 240 Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG D ++ + + + +G H N L + + Sbjct: 241 EGLQTATFGLRPENDQYPTG-ILFTDHQTLFTPHGSEGDPLELPLLGEHNVSNALAAITV 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + S E G R + T+++++YNA+P SMKAA+ VL Sbjct: 300 ARHYGVGEAAIREGFSK---VELTGMRIEVITGRSGITILNDAYNASPTSMKAALGVLEH 356 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + + IAVLGDM E+G+ +H ++ E+L+ + ++ G + + + + Sbjct: 357 MKGYRKK--IAVLGDMLELGDSEADYHREIGEMLTPGTVDQLFTCGPLSRHIAEGAKKQL 414 Query: 423 H---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H L + S L DVV+VK+S ++ + Sbjct: 415 DPNFIHAYTDKSELIRKLVSLLHPQDVVLVKASRGMKLEEVVEAIK 460 >gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] Length = 458 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 216/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ S + + ++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQSTGT-HFKMNRDETSSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLG 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G FH ++ +++ IS+V+ G + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458 >gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 458 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 219/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G FH ++ +++ IS+V+ G + + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPT 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 415 ERVKAYDNKEELAKELQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] Length = 482 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 118/471 (25%), Positives = 194/471 (41%), Gaps = 16/471 (3%) Query: 4 LWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + D + H +G P + ++ DSR++ P + F A+ G +D HDF+ V Sbjct: 8 MMSATDAAAWMAGAHLVG--PDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVA 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA V+V+ + ++ + V V D AL +LA R + ++A+TGS GKTT Sbjct: 66 RGAAAVLVSRPLAGALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 KEM++ + A G+ NN IG+PLTL R+ + ELGM+H GE L Sbjct: 126 KEMISAVFARAVGEEARLATAGNLNNDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLA 185 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P +A+I H +E +A A + L G D + Sbjct: 186 TIAQPTVALINNAQREHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANGGEYAPLW 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++ ++V +G H A+N L Sbjct: 246 RAAAGTRRV-LDFGIEGGAVSATVTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +ALS F P +GR + ++D++YNANP S++AAI Sbjct: 305 TACSLAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVVDDTYNANPDSVRAAIDA 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + R VLGDM E+G +FH ++ I V +G + DA Sbjct: 362 LATLPA----PRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLATGELARHMVDAFG 417 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 418 SGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIATHFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G FH ++ +++ ISHV+ G + + Sbjct: 352 MNGLDGFTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 458 >gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] Length = 458 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 216/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + ++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETSSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G FH ++ +++ IS+V+ G + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458 >gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G+ FH ++ +++ ISHV+ G + + Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium caulinodans ORS 571] Length = 476 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 209/470 (44%), Positives = 275/470 (58%), Gaps = 6/470 (1%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L+T ++L A G + G + V GISID+R++ P +AFFAI G + DGH ++ Sbjct: 1 MTTRALYTPEEILAATGGTARGTLAD--VTGISIDTRTLEPGDAFFAITGENSDGHAYVA 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A++ GA L VV D V + P+ V DVLGAL L AAR RS+A I+A+TGSVG Sbjct: 59 KALENGASLAVVAADRVQGLP--DGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKE L IALS+ +T+A SYNNH GVPL+LAR P +G+FE+GM+H GEI L Sbjct: 117 KTTTKEALRIALSADGETHASAASYNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +VRPH+AVITT+ H++ FSGIEEIA AKAEIF+GLE GT LN D+ F+ L A Sbjct: 177 VRMVRPHVAVITTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVAS 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A G+K I SFG + +L+ S + + G + G H+ QN L Sbjct: 237 ARAKGVKNIVSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V +L D+ A AL+ P GRG +++ G TL+DESYNANPASM+AAI Sbjct: 297 VLAAVRLLGGDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAID 356 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VLS+ GRRIAVLGDM E+G H +LAE L I V+ +G + AL + L Sbjct: 357 VLSRTPVGPRGRRIAVLGDMLELGTEGAQHHRELAEALEAGKIDRVFCAGPLMHALWEVL 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P S Y+ L I +++ GD ++VK SN L+ L E F Sbjct: 417 PSSRKGGYAVHASHLEPLISAAIRAGDTLMVKGSNGSRMGPLVKALAERF 466 >gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] Length = 456 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 19/466 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + ++G V Q + G + D+R++ + F +KG H++GH F+ A +KG Sbjct: 5 TVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + V VDD L AL KLA A +I +TGS GKTTTK+ Sbjct: 65 VSAVLWDR--SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML L + + + G++NNHIG+PLT+ MP D + + E+GMS GEI FL+ L P Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL + G +F D+ Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEPLLRE------KAYT 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G+ + D +L++ KQ E ++ I N++ +G + Sbjct: 237 CRTTTYGEGADNDLRLKEIKQGEEGTYF-----TIDSIDRSFFIPVLGRHNVMNAMGAYA 291 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 T A + G R + ++++++YNA+P SMKAAI ++ + Sbjct: 292 AGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + + VLGDM E+G+ + FH + ++ I HV+ G + D + Sbjct: 352 GYRKKM--LVLGDMLELGDEEKVFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEE 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + L I+ + GD+++ K+S + LLE+ Sbjct: 410 GRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVKDLLEK 455 >gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Coprococcus sp. ART55/1] Length = 455 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 131/465 (28%), Positives = 223/465 (47%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A G + + I I+S+ + F I G DGH FI A+ + A Sbjct: 5 TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESAL-QTA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + ++ VDD + AL + R R ++A+TGSVGKTTT+EM Sbjct: 64 AATLTSEH--DNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T A+S+ K + G+YN+ G P+T++RM + D + ELG+ GE+ LT + +P Sbjct: 122 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDVAVLELGIGEPGEMDILTDIAQPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VITTI AH+ +E K I +G+ + GT+++N DD +K + Sbjct: 182 ICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGTLYINGDDPMLYAVKDEI----PC 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +Y++G + DF+ + S ++ + V +G H +N L+ + + Sbjct: 238 KVYTYGCGEGMDFRATNIRMEDGYSVYDMVHGDDVVTVKVGVMGLHNVRNSLVAMAVSHQ 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + + KA F + G +T+ID++YNA+P SMKA+ VL + Sbjct: 298 LGVPYEKSSKAFENFRGLRQ-----KVIKLPGKYTIIDDTYNASPDSMKASTDVLCDM-- 350 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RS 421 EG++ VLGDM E+GE S +H ++ E L I V + G H +K+AL + Sbjct: 351 KCEGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVIGEHAQKIKEALDACDTKY 410 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + +++ + + D+V++K SN ++N+L Sbjct: 411 AKTVSFTDTEEIAIYLMALMKPEDIVLLKGSNGMKLSEVVNILTN 455 >gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42] gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42] Length = 456 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 210/466 (45%), Gaps = 19/466 (4%) Query: 6 TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + ++G Q + G + D+R++ + F +KG H++GH F+ A +KG Sbjct: 5 TVKRIADMVKGTLTNPEFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + V VDD L AL LA A +I +TGS GKTTTK+ Sbjct: 65 VSAVLWDR--SEPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML L + + + G++NNHIG+PLT+ MP D + + E+GMS GEI FL+ L P Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL + G +F D+ Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEPLLR------QKTYT 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G + D +L++ KQ E ++ + +S + G M GI Sbjct: 237 CRTTTYGAGADNDLRLKEIKQAEEGTYFNIDGIDRSFFIPVLGRHNVMNAMAAYAAGI-- 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 T A + G R + ++++++YNA+P SMKAA+ ++ + Sbjct: 295 ---YFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMK 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + + VLGDM E+G+ ++FH + ++ I HV+ G + D R Sbjct: 352 GYRKKM--LVLGDMLELGDEEKAFHEECGAAVNPAEIDHVFTYGTLGAFIADGARRHFEE 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + L IQ GD+++ K+S ++ LLE+ Sbjct: 410 GRVSHYLDKKELLHAIQEMAASGDLLLFKASRGMKLEEIVKDLLEK 455 >gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] Length = 458 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] Length = 466 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 204/464 (43%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +L+A +G S +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 18 FTLSQVLEATKGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I VD+ L A LA R R ++AITGS GKTTTKE Sbjct: 77 ATGAIVEKGRSVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 132 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + ++NN IG+P TL R+ + + + E+GM LG+I L + P Sbjct: 133 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + L Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DRLAK 248 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G +NA + + + + ++ IG H + L + Sbjct: 249 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F + + +++++YNANP+SM AI L Q+ Sbjct: 309 VLGIKSNTIRKGLSEFSGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 364 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + IA+LGDM E+G+ S+ H ++ +L+ S V+ G + ++ Sbjct: 365 GKRK---IAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 421 Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + GDV++VK S R++ L + Sbjct: 422 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 465 >gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 458 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G FH ++ +++ IS+V+ G + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPK 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 DRVKAYDSKEELIKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458 >gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] Length = 458 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G FH ++ +++ IS+V+ G + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458 >gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] Length = 452 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 208/469 (44%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + G G +N ++ D+R + F A+ G +D HDF A Sbjct: 1 MIPV-SLKTLAEITGGTLHG--SDFTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ + +++P V+D A +L R +S A ++A+TGS GKT Sbjct: 58 IANGAQALLVSKHL-----PVAVPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN GVP+TL R+ + + + ELG +H GEI + T Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P A++ +A AHL F + +A AK EIF+GL G LN + + + + Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPAHGIAILNDESNDWLNWQNTLQ 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++ DF R + + + + + E+V G H N L Sbjct: 233 DKTVWR--FSPQAGECDFSARDIRIAQDGTHFVMNTPRGTAEIVLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L GR R + L+D+SYNAN SM AA+ VL Sbjct: 291 ALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSA---HQLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G ++ V GDM E+GE ++ H ++ E + V G + + Sbjct: 348 SEMP----GYQVLVAGDMAELGEETEKCHREIGEAAREAGLDRVLTCGKFSHFISE---N 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + L ++ L V++K S S +++ L E+ Sbjct: 401 SGVGEHFSDKTALTERLRELLSQHSEITVLIKGSRSAAMEQVVQSLKEK 449 >gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 454 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 218/463 (47%), Gaps = 14/463 (3%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + Q + G + G+SID+R I + I+G +DGH F+ AV+ GA Sbjct: 2 LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D+ + ++PV V+D L AL LA R + ++ +TGS GKT+TK++ Sbjct: 62 VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ Sbjct: 120 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAET 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++ D+ + + + +++ +G H N L ++ I + Sbjct: 240 V--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIATH 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 297 FGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + I VLGDM E+G FH ++ +++ ISHV+ G + + + Sbjct: 354 FTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 412 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 454 >gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] Length = 454 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 218/463 (47%), Gaps = 14/463 (3%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + Q + G + G+SID+R I + I+G +DGH F+ AV+ GA Sbjct: 2 LKQVEQMVNGTGLEEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D+ + ++PV V+D L AL LA R + ++ +TGS GKT+TK++ Sbjct: 62 VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ Sbjct: 120 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAET 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 240 V--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIAKH 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 297 FGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + I VLGDM E+G+ FH ++ +++ ISHV+ G + + + Sbjct: 354 FAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 412 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 454 >gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. natto BEST195] Length = 481 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 214/465 (46%), Gaps = 20/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + ++G Q ++G++ D+R + + F +KG +DGH F+ A + G Sbjct: 29 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFEAG 88 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + + + V VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 89 VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 146 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP + + + E+GMS GEI L+ L P Sbjct: 147 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 206 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL++ G + D+ + Sbjct: 207 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 259 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G + D+QL+ Q E + ++ + + G M + + Sbjct: 260 CQTKTYGTGAHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAI-----A 314 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 T A + G R ++I+++YNA+P SMKAAI + + Sbjct: 315 AGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 373 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 G G+++ VLGDM E+G+L ++FH + V+S I V+ G + + + Sbjct: 374 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKQFEK 432 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L ++ + GD+++ K+S ++ L+E Sbjct: 433 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 477 >gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] Length = 452 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 210/469 (44%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + G G +N ++ D+R + F A+ G +D HDF A Sbjct: 1 MIPV-SLKTLAEITGGTLHG--SDLTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ + +S+P V+D A +L+ R +S A ++A+TGS GKT Sbjct: 58 IDSGAQALLVSKHL-----PVSVPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN GVP+TL R+ + + + ELG +H GEI + T Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDYGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P A++ +A AHL F + +A AK EIF+GL G LN + + + + Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPANGIAILNEESNDWPNWQTTLQ 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + ++ DF R + + + ++ E+V G H N L Sbjct: 233 DKTVWR--FSPQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L GR R + L+D+SYNAN SM AA+ VL Sbjct: 291 ALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSA---HQLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V GDM E+G+ ++ H ++ + I V G + + Sbjct: 348 SEMP----GYRVLVAGDMAELGDETEKCHREIGDAARDAGIDRVLSCGKFSHFISE---N 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + L ++ L + V++K S S +++ L E+ Sbjct: 401 SKAGEHFSDKTALTERLRQLLSEHSEITVLIKGSRSAAMEQVVQSLKEK 449 >gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] Length = 468 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 217/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 11 MIKRM-LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 70 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 127 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 128 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 187 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ Sbjct: 188 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN--RVP 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +FG ++ D+ + + + +++ +G H N L + Sbjct: 246 GMNLAAETVTFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + L + G R T+I+++YNA+P +M+AA + Sbjct: 305 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G+ FH ++ +++ ISHV+ G + + Sbjct: 362 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 419 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 420 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 468 >gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] Length = 452 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 206/464 (44%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A QG S IS D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVVEATQGTSAHTD-NIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I VD+ L A LA R R ++AITGS GKTTTKE Sbjct: 63 ATGAIVEKGRAVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + +YNN IG+P TL R+ + + + E+GM LG+I L + P Sbjct: 119 MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + +L Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G +NA + + + + ++ IG H + L + Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F + + +++++YNANP+SM AI L Q+ Sbjct: 295 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-H 423 + IA+LGDM E+G+ S+ H ++ ++L+ S V+ G + ++ Sbjct: 351 GKRK---IAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + GDV++VK S R++ L + Sbjct: 408 AFRCKSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451 >gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] Length = 462 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 210/464 (45%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ + + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 IA+LG M E+G H +++E I ++ G A ++ Sbjct: 357 KGKR---TIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL+K G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G FH ++ +++ IS+V+ G + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V ++ + L +Q+ + DVV+VK+S +I +L Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458 >gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter sulfurreducens KN400] Length = 470 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 143/472 (30%), Positives = 211/472 (44%), Gaps = 16/472 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+T D+L A G + +G+S DSR++ P E F ++G +DGHD++ A + Sbjct: 2 LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPGELFIPLRGERFDGHDYLDAARAR 61 Query: 64 GAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G L +V +A + VDD L AL LA R R ++A+TGS GKTTT Sbjct: 62 GVRLTLVERQWLAGRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L+ + G+ NN IGVP L R+ + + E+GMS GEI L +V Sbjct: 122 KEMLAAILARTGEGLKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEFGEIDRLAEIV 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + +IT PAHL +E +A AK E+F LE + N DD L A+ + Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDP----LIARCPSP 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 SFG + ++L + V H G H N L Sbjct: 238 EGVKRVSFGLRGGDVTAEDVENLGKKGQRFTLRLPNGRVTVTLHAFGSHNVANALAAAAA 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + + L F P R G LID+SYNANPASM AA++ L + Sbjct: 298 ARVLGVAPEEIARGLGEFMP----YARRFNLEEVGDVVLIDDSYNANPASMAAALTTLRE 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I G GR +AVLGDM E+G ++ H L + + + +++ G + Sbjct: 354 I--KGSGRAVAVLGDMLELGIGAEEAHRQLGRLAATC-VDRLYVLGAMAGTVAAGALEGG 410 Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 HV + + ++ + G++++VK S R+ + E F A Sbjct: 411 LEERHVTIAADHGEIVADLRRTAATGEMILVKGSRGMAMDRVAEGIREAFAA 462 >gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] Length = 452 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 204/464 (43%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +L+A +G S +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVLEATKGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I VD+ L A LA R R ++AITGS GKTTTKE Sbjct: 63 ATGAIVEKGRSVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + ++NN IG+P TL R+ + + + E+GM LG+I L + P Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + L Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DRLAK 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G +NA + + + + ++ IG H + L + Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F + + +++++YNANP+SM AI L Q+ Sbjct: 295 VLGIKSNTIRKGLSEFSGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + IA+LGDM E+G+ S+ H ++ +L+ S V+ G + ++ Sbjct: 351 GKRK---IAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407 Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + GDV++VK S R++ L + Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451 >gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] Length = 458 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 218/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 238 NLATETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G+ FH ++ +++ ISHV+ G + + Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] Length = 458 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 217/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN--RVP 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +FG ++ D+ + + + +++ +G H N L + Sbjct: 236 GMNLAAETVTFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G+ FH ++ +++ ISHV+ G + + Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 472 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 201/472 (42%), Positives = 284/472 (60%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G ++G +P+ +G+SIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMDGFTVGCLPEI-FSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + ++ P+ V DVL AL KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ K +A + S NN GVPLTLARMP+D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT IA H+ F +EE+A AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S +AD+Q+++ S M V K M + G HM QN L L Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + AD+ AL F ++GRG Y+ +L+ G + + SYNANP SM+ A+ + Sbjct: 300 AACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GRRIA+LGDM E+G+ S+ H DL E + + V+L G + L L Sbjct: 360 LATGPIGVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMGVLASDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + V+++E ++ + + S + +GD++++KSS+ ++ +L + I Sbjct: 420 AYVTVYHAENIEEIVPLVFSEISNGDLIMIKSSHHIYLSNIVAEILNRYKVI 471 >gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] Length = 479 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 128/474 (27%), Positives = 197/474 (41%), Gaps = 13/474 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G I P V G + IDSR + P F A+ G DGHDF Sbjct: 1 MIAL-SLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGERVDGHDFAR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A++ GA V+ + +P V DV+ A+ LA A R AT++A+TGS G Sbjct: 60 KAIEAGATAVLAARPVG--TADAPVPAIVVPDVIAAMGALARAVVERLDATVVALTGSAG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + E+G G IR+L Sbjct: 118 KTSTKDLIAQLLQRRGPTVWTPGSLNNEIGLPLTAMSADEATLHLVLEMGARGKGHIRYL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L P I ++ + AH+ F G E+IA AK E+ E L + + L Sbjct: 178 ATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEEG-GVAVLNADDPLVRA 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + FG++++AD + + ++ L + Y Sbjct: 237 MMSRTKARTVLFGEAEDADVRAGNVRL-ADGGRPAFTLHTPTGCSEVTMRLYGEHHVSNA 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A+++ + R T+++++YNANP SM+AA+ Sbjct: 296 LAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVNDAYNANPESMRAALR 355 Query: 359 VLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416 L + GRR AVLG M E+GE S + H + + N+S + G L Sbjct: 356 ALVAMGAATPGRRTWAVLGQMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWLDM 415 Query: 417 ALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G RL LL+ Sbjct: 416 GAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLVKASRSVGLERLAQALLD 469 >gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] Length = 454 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 216/463 (46%), Gaps = 14/463 (3%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + Q + G + G+SID+R I + I+G +DGH F+ AV+ GA Sbjct: 2 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D+ + ++PV V+D L AL LA R + ++ +TGS GKT+TK++ Sbjct: 62 VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ Sbjct: 120 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AHL + E IA AK EI GL++ G N D+ Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN--RVPGMNLAA 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 238 ETVTFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIAKH 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 297 FGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + I VLGDM E+G+ FH ++ +++ ISHV+ G + + + Sbjct: 354 FAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 412 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 454 >gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] Length = 458 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIATHFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G FH ++ +++ I+HV+ G + + Sbjct: 352 MNGLDGFTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 458 >gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 468 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 11 MIKRM-LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 70 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 127 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 128 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 187 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 188 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 247 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 248 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + + L + G R T+I+++YNA+P +M+AA + Sbjct: 305 MAIATHFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHL 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G FH ++ +++ I+HV+ G + + Sbjct: 362 MNGLDGFTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAK 419 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 420 INFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 468 >gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] Length = 458 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 216/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + + ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKGV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + E + I N+ TL ++ Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT----HFKMNREENISFYIPVLGKHNVYNTLASMA 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 I T + + G R T+I+++YNA+P +M+AA +++ + Sbjct: 297 IAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEIITMLK 458 >gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 458 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + Q + G + G+SID+R I + I+G +DGH F+ Sbjct: 1 MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV+ GA + D+ + ++PV V+D L AL LA R + ++ +TGS GK Sbjct: 60 AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP+ A+IT I AHL + E IA AK EI GL++ G N D+ + Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG ++ D+ + + + +++ +G H N L + Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I + + L + G R T+I+++YNA+P +M+AA + Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + I VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAK 409 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V + + L +Q+ + DVV++K+S +I +L Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] Length = 454 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 124/463 (26%), Positives = 218/463 (47%), Gaps = 14/463 (3%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + Q + G + G+SID+R I + I+G +DGH F+ AV+ GA Sbjct: 2 LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D+ + ++PV V+D L AL LA R + ++ +TGS GKT+TK++ Sbjct: 62 VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP+ Sbjct: 120 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AHL + E IA AK EI GL++ G N D+ + + Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAET 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++ D+ + + + +++ +G H N L ++ I + Sbjct: 240 V--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIATH 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 297 FGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + I VLGDM E+G FH ++ +++ I+HV+ G + + + Sbjct: 354 FTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 412 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 454 >gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium sp. 4-46] gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium sp. 4-46] Length = 485 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 191/474 (40%), Positives = 268/474 (56%), Gaps = 7/474 (1%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT +L A G ++ P ++G+SID+R++ + FFAI+G DGHDF+ Sbjct: 1 MTEPLWTLDAVLAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRD 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAIT 114 A+ +GAG VV+ A + P+ V D VL A+ KLA AAR RS+A I+A+T Sbjct: 61 ALARGAGAAVVSQARAADLAGAG-PLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVT 119 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKT TKE L L++ T+A + SYNNH GVPLTL RMP FG+FE+GM+H GE Sbjct: 120 GSVGKTGTKEALRHVLAAQGATHASVASYNNHWGVPLTLGRMPAASAFGVFEIGMNHAGE 179 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I LT LVRP +AV+TT+ P H+ +F + IA AK EIF GLE G +N D+ FE Sbjct: 180 IAPLTRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCGLEPGGVAVINRDNPHFER 239 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+ + A I SFG+ AD + + + S ++ ++ G + G H A Sbjct: 240 LRDHALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHTAL 299 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + V L AD+ A +L+ P GRG+R L G L+DESYNANPAS++ Sbjct: 300 NSLAVMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPASVR 359 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AA++ L+ I G RRIAVLGDM E+G + H DLA ++ + I V+++G + L Sbjct: 360 AALATLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFVAGPLMAEL 419 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +ALP + + L + + + GD V+VK SNS R++ L + Sbjct: 420 FEALPAGTRGVAAASSADLLDAVVAEIRPGDAVMVKGSNSTRMGRIVEALKARY 473 >gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] Length = 477 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT DLL A+ G +G +P+G + GISIDSR+IA EAFFAI+G DGHD+ A Sbjct: 1 MNWLWTCSDLLAAMNGRPVGNLPEGII-GISIDSRTIAKGEAFFAIRGDRVDGHDYAGIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L P+ VDDVL A+ +L AAR RS A +IA+TGSVGKT Sbjct: 60 LANGASLLVVSEGKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + + +A I S+NNH GVPLTLARMP +FGIFE+GM+H GEIR LT Sbjct: 120 TTKEMLRHVLSPLGRVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEIRPLTA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ K G +N D FELL+ + Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELLERAAV 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G+ I+SFG + ++++L ++ +E S + + G++ EV G H+A+N L + Sbjct: 240 AAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGAPGRHIAENALAVV 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + AD+D + +L+ P++GRG R+R + G TLIDESYNANPASM+AAIS+L Sbjct: 300 AAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPASMRAAISLL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P GRRIA+LGDM EMGE + + H LAE + I+ VWL+G + L+DALP Sbjct: 360 RAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGITDVWLAGPDIAHLRDALPG 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V + E + L + ++ GDVV+VKSS G +++ LL+ +P Sbjct: 420 EVSVVHREAVGDLTSYALGAVAAGDVVMVKSSKGTGCAKIVQALLDAYP 468 >gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103] gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103] Length = 452 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 212/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + G G +N ++ D+R + F AI G +D HDF A Sbjct: 1 MIPV-SLSTLAEIASGTLHGD--DLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA ++V+ + +S+P V D A KLA R ++ A ++A+TGS GKT Sbjct: 58 IAKGAKALLVSKHL-----PVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN GVP+TL R+ + + + ELG +H GEI + T Sbjct: 113 SVKEMTASILRQCGETLHTAGNLNNDFGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F +E +A AK EIF GL GT LN D + + + H Sbjct: 173 LVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGLPARGTAILNADSNDWPRWQENLH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G ++ + DF + + + ++ +++ G H N L Sbjct: 233 --GKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMRTPRGEADIILPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L GR R + ++D+SYNAN SM AA VL Sbjct: 291 ALALSVDAPLSAVQAGLKSLQSVPGRLFPVRLS---EHQLILDDSYNANVGSMVAAAQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ S+ FH ++ + V +G L + Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLSTGQFSHFLSE---S 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + L ++ L + V++K S S +++ L E+ Sbjct: 401 SGVGEHFSDKTALTERLRQLLSEHQEMTVLIKGSRSAAMEQVVQSLQEK 449 >gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU045] Length = 451 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 139/461 (30%), Positives = 208/461 (45%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + +NG+SIDSR I F KG + DGH FI A+ GA Sbjct: 5 TLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G V + S G+ P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAVFSEKENKHSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ K G+YNN IG+PLTL + D + I E+GMS +I L+H+ +P Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK EI GL+ G + D+ LLK + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + ++ + +E + + + NM ++I Sbjct: 241 KLISIGLNSDSTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + H + R + T+I+++YNA+P SMKAAI LS + Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424 GR+I +L D+ E+G SQ H + E L NI ++ G + D+ Sbjct: 354 ---GRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 Y + D L + S + D V+VK S +++ LL Sbjct: 411 KYFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451 >gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 199/464 (42%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++ A G IS D+R+I F A++G +DGHDFI A++KG Sbjct: 4 FTLQEIIDATSGT-CKGDVSLQFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I V++ L A LA R R + ++AITGS GKTTTKE Sbjct: 63 ATAAIVEKGRSVD----GIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ LS+ ++NN IG+P TL ++ + + + E+GM LG+I L + P Sbjct: 119 MVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I +IT + +H+ E IA AK E+ L LN DD F + + + Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHFVKAMSSI----AE 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G NA + + + + +V IG H + L + Sbjct: 235 GKTVTYGIHSNATVIGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAAIAAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L K LS F + + +++++YNANP+SM +I L Q+ Sbjct: 295 VLGVKSSKIKKGLSDFTGT----PMRQEIVAFEDIVILNDAYNANPSSMSESIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIH 423 + IA+LGDM E+G+ ++ H + +L+ S V+ G + + Sbjct: 351 GKRK---IAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFTFGEAANFIAKEAKLAGLE 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 VH + + GDV++VK S R++ L E Sbjct: 408 VHRCNSHLEMANAYNDIREKGDVILVKGSRGLRMERVVEELKER 451 >gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU028] Length = 451 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 138/461 (29%), Positives = 207/461 (44%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + +NG+SIDSR I F KG + DGH FI A+ GA Sbjct: 5 TLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G V + S G+ P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAVFSEKENKYSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ K G+YNN IG+PLTL + D + I E+GMS +I L+H+ +P Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK EI GL+ G + D+ LLK + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + + + +E + + + NM ++I Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + H + R + T+I+++YNA+P SMKAAI LS + Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSGMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424 GR+I +L D+ E+G SQ H + E L NI ++ G + D+ Sbjct: 354 ---GRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 Y + + L + S + D V+VK S +++ LL Sbjct: 411 KYFDNKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451 >gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus bromii L2-63] Length = 450 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 135/467 (28%), Positives = 209/467 (44%), Gaps = 23/467 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +T ++ +A G +G + + DSR + F AIKG DGHDFI Sbjct: 4 FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEKCFA 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA + + + + P V L A+ K+ A R + +I I+GSVGKT+T Sbjct: 64 QGAVCALCEK----APENATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS KT+ G+ NN +GVPLTL MP D + + E+G+S GE+ L+ +V Sbjct: 120 KEMLYAVLSQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMTRLSEMV 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I V+T I HL N + + AK E+F+ + LN DD +K + Sbjct: 180 QPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVK----TV 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K FG DF + K + + +++V IG +M N L Sbjct: 236 NGKKPVFFGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNIDVEIPAIGTYMVTNALAAAA 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +L + ++ + R +N G +ID+ YNANP S++A++ LS Sbjct: 296 AGKLLGLTDEEIANGVASYKTVGSR----ANVINTGKIKIIDDCYNANPTSVRASLDTLS 351 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + +GR++A+LGDM E+G H D I V G L Sbjct: 352 NL----DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVITVGELAKELAKGA--- 404 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +T++ I ++ GDVV+VK+S+S F ++ L + F Sbjct: 405 -DGKAFDTIEDAKPEILKTIKSGDVVLVKASHSMQFENIVEFLKQNF 450 >gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] Length = 460 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 213/468 (45%), Gaps = 16/468 (3%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T L I G + G+SID+R+I + IKG ++GH F+ A++ G Sbjct: 5 TLTQLATMIPGSVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + N D I V VDD L AL +LA + R ++ ITGS GKTT K+ Sbjct: 65 ALATLWNKD--EENPPTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + G++NNHIG+PLT+ R+ D + E+GMS GEI FL++L P Sbjct: 123 MVKAVLDTTYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I +HL + + IA AK EI GL TG + N D+ L + Sbjct: 183 DVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEP----LLTSRVVNPV 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG S+ D + V + +G H N L + + Sbjct: 239 FETVTFGSSEQNDLYPSAISAEELGTTFTVSRETTYPFF-IPVLGKHNVHNALSAIAVGH 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D +T K L + R T I+++YNA+P S+KAAI+++ + Sbjct: 298 YFGLDNETIAKGLKE---LKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL- 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G ++I VLGDM E+G+ + FH ++ E + I +V G + ++ + Sbjct: 354 -EGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAE 412 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 V + E D L + + DVV+VK+S +I+ ++ + P Sbjct: 413 DKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460 >gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 182/472 (38%), Positives = 246/472 (52%), Gaps = 10/472 (2%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT D +A QG +G+SID+R++ P + F A+ DGHDF Sbjct: 1 MTAPLWTARDAAEASQGRLTEGG--WAASGVSIDTRTLQPGDLFVALT-AQRDGHDFAQA 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ KGA V+V+ + S P V++VL L +L AR RS A + +TGSVGK Sbjct: 58 ALDKGAAAVLVSNP-----EACSGPRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ KE L + SYNNH GVPLTLARMP +FE+GM+H GEI LT Sbjct: 113 TSVKEALAAVFIKAGPAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEISELT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A+IT IAPAHL N +E IA AKAEIFEGLE G + DD F L Sbjct: 173 RMVRPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRLMQAV 232 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + FG + A ++ + + + + + GK M+ G H A N Sbjct: 233 QGSGAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGV 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAIS 358 + D D A+ ALS P EGRG + L++G + + SYNANPASM+AA Sbjct: 293 VAAALGAGVDPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFG 352 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL P G+ R+IAV+G+M E+G S++ H LAE L + V G AL DAL Sbjct: 353 VLKLRKPSGQDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARALMDAL 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 P + ET + + DGDVV+VK SN+ G ++L++ L ++ Sbjct: 413 PAEHRAAWCETAESAIETLSELARDGDVVLVKGSNASGVHKLVSSLRDKAKP 464 >gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] Length = 462 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 115/462 (24%), Positives = 208/462 (45%), Gaps = 13/462 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K + + + S + + Q + + G H N L + + Sbjct: 243 YKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACGRV 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 303 LDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNIKG 358 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423 IA+LG M E+G H +++E I ++ G A ++ + Sbjct: 359 KR---TIALLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREGFEEINKEN 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +I++ + DGD++++K+S + ++ L Sbjct: 416 YKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKELR 457 >gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] Length = 462 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 208/462 (45%), Gaps = 13/462 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K + + + S + + Q + + G H N L + + Sbjct: 243 YKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACGRV 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 303 LDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNIKG 358 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423 IA+LG M E+G H +++E I ++ G A ++ + Sbjct: 359 KR---TIALLGSMMELGAEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINKEN 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +I++ + DGD++++K+S + ++ L Sbjct: 416 YKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter sp. 638] gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterobacter sp. 638] Length = 452 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 212/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + G G V+ ++ D+R I P F A+KG +D HDF A Sbjct: 1 MISI-TLRQAATVLNGELQGQ--DLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V+ + + +P V D A +LA R + ++A+TGS GKT Sbjct: 58 KENGAGALLVSRKL-----DIDLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + ++ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTEEHEYAVIELGANHQGEIAWTVD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F +E +A AK EI+ GL + G +N D++ + + Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGGLPENGIAIMNADNNDWLNWQNIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + ++ ++V+ G H N L Sbjct: 233 SRKTWR--FSPNAANSDFSATNIHVTSHGTEFTLKTPTGDVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A D L GR + A L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGATHDAIKTGLLNLKAVPGRLFPIQLAEK---KLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ S++ HI + + I V +G A+ A Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEACHIQVGDAAKASGIDCVLSAGKLSQAISQA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++ + + + V+VK S S +++ L E Sbjct: 401 SGVGEHFADKTALITRLKKLVAEHQIVTVLVKGSRSAAMEEVVHALQE 448 >gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] Length = 473 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 203/472 (43%), Positives = 289/472 (61%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G ++G +P+ F GISIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMNGFTVGCLPETFP-GISIDSRTLLEGDVFFCIKGHHLDGHDFAAHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + + P+ V DVL +L KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ K +A + S+NN GVPLTLARMP+D D+ IFE+GM+H EIR L Sbjct: 120 TTKEALKQALETVGKVHANLASFNNCWGVPLTLARMPIDSDYAIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT IA H+ F +EEIA AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGLDKDGIALLNADDHFFSYLLQKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S AD+Q ++ ++ S M V L K + + G HM QN L L Sbjct: 240 QFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + AD+ + AL+ F ++GRG Y+ +L+ G + + SYNANP SM+AA+ + Sbjct: 300 AACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNANPTSMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GRRIA+LGDM E+G+ S+ H DL + + + + V+L G + L + L Sbjct: 360 LATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLVGKEMKFLANDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 ++V +SE ++ + + S + +GD++++KSS ++ +L+ + I Sbjct: 420 SHVNVCHSENIEEILPLVFSEISNGDLIMIKSSRRIYLSNIVTAILDRYKVI 471 >gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 462 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 118/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ Q + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 I +LG M E+G H +++E I ++ G A ++ Sbjct: 357 KGKR---TITLLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREGFEEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKELR 457 >gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU144] Length = 451 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 139/461 (30%), Positives = 208/461 (45%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + +NG+SIDSR I F KG + DGH FI A+ GA Sbjct: 5 TLEQIKNWIDCEIDEKHFKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G V + S G+ P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAVFSEKENKHSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ K G+YNN IG+PLTL + D + I E+GMS +I L+H+ +P Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK EI GL+ G + D+ LLK + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + ++ + +E + + + NM ++I Sbjct: 241 KLISIGLNSDSTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + H + R + T+I+++YNA+P SMKAAI LS + Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424 GR+I +L D+ E+G SQ H + E L NI ++ G + D+ Sbjct: 354 ---GRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 Y + D L + S + D V+VK S +++ LL Sbjct: 411 KYFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEIVDALL 451 >gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759] gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759] Length = 495 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 224/470 (47%), Gaps = 18/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T ++L+A G + + I I+S+ + F I G DGH FI A Sbjct: 40 MMVDITVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESA 99 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +Q A + + ++ VDD + AL + R R ++A+TGSVGKT Sbjct: 100 LQV-AAATLTSEH--DNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKT 156 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TT+EM+T A+S+ K + G+YN+ G P+T++RM + D + ELG+ GE+ LT Sbjct: 157 TTREMITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDAAVLELGIGEPGEMDILTD 216 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I V+TTI AH+ +E K I +G+ K GT+++N DD +K + Sbjct: 217 IAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGTLYINGDDPMLYAVKDEI- 275 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +Y++G + DF+ + S ++ + V +G H +N L+ + Sbjct: 276 ---PCKVYTYGCGEGMDFRATNIRMEDGYSIYDMVHGDDVVTVKVGVMGLHNVRNSLVAM 332 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L + + KA F + G +T+ID++YNA+P SMKA+ VL Sbjct: 333 AVSHQLGVPYEKSSKAFENFRGLRQ-----KVIKLPGKYTIIDDTYNASPDSMKASTDVL 387 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + EGR+ VLGDM E+G+ S +H ++ E L I V + G H +K+AL Sbjct: 388 CDM--KCEGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVIGEHAQKIKEALDE 445 Query: 421 S----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + +++ + + D+V++K+SN ++N+L Sbjct: 446 CDTKYAKTVSFTDTEEIAIYLMALMKPEDIVLLKASNGMNLSEVVNILTN 495 >gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter uraniireducens Rf4] gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter uraniireducens Rf4] Length = 468 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 141/470 (30%), Positives = 208/470 (44%), Gaps = 17/470 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T ++++A G IG V+G+S DSR +A E F A+KG +DGHD++ AV + Sbjct: 1 MFTIDEIIEATGGTRIGSGNDA-VSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVAR 59 Query: 64 GAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G +V D +A + V D L AL LA R R ++ ITGS GKTTT Sbjct: 60 GVRAFLVAADRLAGKQPPNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L+ G+ NN IG+PL L R+ + + E+GMS GEI L + Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSEPGEIDRLAEMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I VIT AHL + +E +A AK E+F L+ G N DD L ++ A Sbjct: 180 NPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDP----LISRCPAP 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 SFG E ++L G + V G H N L Sbjct: 236 AGVKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAAA 295 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L D + L F P + R L+D+SYNANPASM AA+ L Sbjct: 296 AHLLGVDPELIRSGLEEFTPYDKRFSLEEIRG----VVLVDDSYNANPASMAAALVTLRD 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I E R IA+LGDM E+G S + H ++ +L+ + ++ G + Sbjct: 352 IR--EESRAIAILGDMLELGTGSVAAHREVG-LLAATCVERLYAMGEMAETVAAGAVDGG 408 Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ + T + + ++ + GD ++VK S + + + F Sbjct: 409 LSPENIVVARTHEEIIADLRRRVAKGDNILVKGSRGMRMDIVAEAIRQGF 458 >gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 462 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ Q + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 IA+LG M E+G H +++E I ++ G A ++ Sbjct: 357 KGKRA---IALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] Length = 466 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 207/464 (44%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A QG + IS D+R+I F A+KG +DGHDFI A++KG Sbjct: 18 FTLSQVVEATQGANAHTD-NIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I VD+ L A LA R R ++AITGS GKTTTKE Sbjct: 77 ATGAIVEKGRAVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 132 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + +YNN IG+P TL R+ + + + E+GM LG+I L + P Sbjct: 133 MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + +L Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 248 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G +NA + + + + ++ IG H + L + Sbjct: 249 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F + + +++++YNANP+SM AI L Q+ Sbjct: 309 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 364 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + IA+LGDM E+G+ S+ H ++ ++L+ S V+ G + ++ Sbjct: 365 GKRK---IAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 421 Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ + GDV++VK S R++ L + Sbjct: 422 TFRCKSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 465 >gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 458 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 219/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVALQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + I VLGDM E+G FH ++ +++ I++V+ G + + + Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFTYGKLGAQIAEGAKINFPI 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV++K+S +I +L Sbjct: 415 ERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEVITMLK 458 >gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] Length = 458 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 211/465 (45%), Gaps = 15/465 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L + I+ + + G+SIDSR I F KG DGH F+ A++ G Sbjct: 5 SLGELAKMIKVENDLSAFQDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ +P+ V++ L AL LA A R ++ ITGS GKTTTK+ Sbjct: 65 AAASLWEKDV--PNPPEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ LS K G++N+HIG+PLT+ + + + E+GMS GEI L+++ P Sbjct: 123 MVANLLSLKYKVQKTQGNFNSHIGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A+IT I +HL + E IA+AK EI GL++ G ++ LLK + Sbjct: 183 DAAIITNIGESHLQDLGSREGIATAKMEIISGLKEDGLFVYYGEEP---LLKERIDKDWK 239 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FGK K S +V + + + +G H N L ++ + Sbjct: 240 FKVETFGKGTENTLYPLDVKTTDSGSVFKVNAEPDTEVM-LPVLGEHNVMNALASMLVAK 298 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +A + R + + +++++YNA+P SM+AAI +LS + Sbjct: 299 EFDVEYKEMPEAFQQLKLTQMRMEMMEGKRGEK---ILNDAYNASPTSMRAAIGLLSGL- 354 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G G++I V GDM E+G +++H ++ + + I V+ G + Sbjct: 355 -QGYGKKILVAGDMLELGPNEENYHYEVGQEVQKGKIDLVFTFGTLARQTARGAAENIGE 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +V + L ++S L ++++ K+S +I L E Sbjct: 414 KNVFSFDDKQELTEKLESILHGDEIILFKASRGMKLEEIIESLTE 458 >gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 457 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 214/465 (46%), Gaps = 20/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + ++G Q ++G++ D+R + + F +KG H++GH F+ A + G Sbjct: 5 TVKNIAKMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFEAG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ + + V VDD L AL +LA A +I +TGS GKTTTK+ Sbjct: 65 VAAVLWDR--SEPNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP D + + E+GMS GEI L+ L P Sbjct: 123 MIHAVLGTRYRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI GL++ G + D+ + Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------KTYS 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G D+QL+ Q E + ++ K+ + G M + + Sbjct: 236 CQTKTYGAGAQNDYQLQDVSQSEEGTHFTIKGMEKTFFIPILGKHNVMNAMAAI-----A 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 T A + G R ++I+++YNA+P SMKAAI + + Sbjct: 291 AGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYNASPTSMKAAIQLTESL- 349 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 G G+++ VLGDM E+G+L ++FH + V+S I V+ G + + + Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFTYGKLGAFIAEGALKHFEK 408 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L ++ + GD+++ K+S ++ L+E Sbjct: 409 ERVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453 >gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] Length = 473 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 125/467 (26%), Positives = 204/467 (43%), Gaps = 14/467 (2%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + G + G+ DSR+I P F I G +DGH+F+ + G Sbjct: 5 SLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG D +P+ V+D L AL LA A S+A ++ ITGS GKTT K+ Sbjct: 65 AGAAFWQRDHQP--VPADLPLIFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ L + + G+YNNHIG+PLT+ M D D + E+GMS EI L+++ RP Sbjct: 123 MVSALLETTYNVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242 + VIT + AHL EEIA AK EI G++ G + + D+ + A+ + Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKP 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++FG D + + + +G H N L + + Sbjct: 243 EGLRTFTFGNQDTNDDYPTGLMFHARGI-IFTSSRHAGEGFSLPLLGRHNVVNALAAMAV 301 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L + + + R T+++++YN++P ++KAA+ VL Sbjct: 302 ATHLGIGDEAIRSGFAH---LKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGD 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419 + + IAVLGDM E+G+ +SFH ++ E LS N V+ G L + Sbjct: 359 MKGYRRR--IAVLGDMLELGQREESFHAEIGEYLSPDNADLVFTYGPLSLHTANKAKARF 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L + + + D+V+VK+S +++ L Sbjct: 417 PEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRGMRLEHVVDALKA 463 >gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] Length = 463 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 205/469 (43%), Gaps = 16/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T D+L A++G +G ++ + DSR+I F + G +DGH +I Sbjct: 1 MEPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYIT 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A++ GA D + + VD AL LAV + + ++A+TGSVG Sbjct: 60 SALEGGAAACFTQRDRESYLP--GKCYIRVDHTQRALRDLAVWYKKKFDIPVVAVTGSVG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+M+ L K G+ N IG TL R+ + E+GM+H GEI + Sbjct: 118 KTTTKDMVAAVLGEHYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNHPGEIEVM 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P + +IT I +H+ + E I AK EIF + LN DD L+ K Sbjct: 178 SAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPLLRTLEGK 237 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + G AD + EV+ S +V +G HM LM Sbjct: 238 LPEPILWCGGAPGLDYTADHLVSDGTS---NVCCEVKTPHTSCQVEIPALGSHMIYPTLM 294 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + + F P + R + T+++++YNANP SM+AA+ Sbjct: 295 AAAVAEHFGVTAEEFRRGVLHFAPTKMRMNIIQ---RGEDITILNDTYNANPQSMRAAVE 351 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VLS+ GR+IAVLGDM E+G L+ + H + L I + G + DA Sbjct: 352 VLSKTHS---GRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAVGELAKNIYDAA 408 Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ VHY T + + + ++VK+S F L L Sbjct: 409 REAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRGMAFEDLTEYLK 457 >gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] Length = 452 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 205/464 (44%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A QG S +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVVEATQGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I VD+ L A LA R R ++AITGS GKTTTKE Sbjct: 63 ATGAIVEKGRAVD----GIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + ++NN IG+P TL R+ D + E+GM LG+I L + P Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + +L Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G +NA + + + + ++ IG H + L + Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F + + +++++YNANP+SM AI L Q+ Sbjct: 295 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + IA+LGDM E+G+ ++ H ++ ++L+ S V+ G + ++ Sbjct: 351 GKRK---IAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407 Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + GDV++VK S R++ L + Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451 >gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 452 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 205/464 (44%), Gaps = 17/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++A G S +S D+R+I F A+KG +DGHDFI A++KG Sbjct: 4 FTLSQVVEATAGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V I V++ L A LA R R ++AITGS GKTTTKE Sbjct: 63 ATGAIVEKGRAVE----GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + ++NN IG+P TL R+ + + + E+GM LG+I L + P Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT + +H+ E IA AK E+ L + LN DD + + + +L Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 234 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G +NA + + + + ++ IG H + L + Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +T K LS F + + +++++YNANP+SM AI L Q+ Sbjct: 295 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + IA+LGDM E+G+ S+ H ++ ++L+ S V+ G + ++ Sbjct: 351 GKRK---IAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407 Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + GDV++VK S R++ L + Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451 >gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] Length = 454 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 134/463 (28%), Positives = 219/463 (47%), Gaps = 17/463 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + Q G + + G++ D+R ++ F + G H++GH F AV+ G Sbjct: 5 TVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ N + +PV VDD L AL +LA + ++ ITGS GKTTTK+ Sbjct: 65 AAAVLWNQK--EANPPFGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + + G++NNHIG+PLT+ MP + + E+GMS GEI FL++L P Sbjct: 123 MIHSVLQTTYQVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIEFLSNLAEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I +H+ + E IA AK EI +GL+K GT + D+ L Sbjct: 183 ETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTFYYLGDEP----LIRDRATALS 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +FG++++ D ++ Q +E + Q++G + + +G H +N L + I Sbjct: 239 QQVKTFGEAEDCDIKVTHINQLAEGTE--FQVEGYAQGFLIPVLGKHNVKNALAAIAIGQ 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L R + ++ T+I+++YNA+P SMKAAI ++ + Sbjct: 297 HFGLNERQIAQGLMQTKLTGMRLELFKTEKG---ITVINDAYNASPTSMKAAIDLVGDMD 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 I VLGDM EMG +++H +L + I HV G + + +S Sbjct: 354 GFANR--ILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGD 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + L + DVV+VK+S +I L Sbjct: 412 ARVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVITAL 454 >gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] Length = 446 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + + G +S D+R+I P F A++GP++D +DFI A ++ Sbjct: 1 MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN + ++P+ V D L AL +LA R + I +TGS GKTTT+ Sbjct: 59 GAVGAVVNR-----VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L A S+NN+IGVPLTL R+ D + + ELG +H GEI +LT L + Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT P HL F +E +A AK EIFEGL GT +N DD F E + +H+ Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I SFG ++ AD + S+ ++ L +E+ IG H N L Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D L P +GR + +ID+SYNANP S+ AAI+VL+ Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G + VLGDM E+G+ ++ FH ++ + + ++ G +A Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAF--GK 401 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + L +++ L VV+VK S S + + LLEE Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446 >gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Pantoea ananatis AJ13355] Length = 452 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 210/469 (44%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + G G +N ++ D+R + F AI G +D HDF A Sbjct: 1 MIPV-SLSTLAEIASGTLHGD--DLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KG ++V+ + +S+P V D A KLA R ++ A ++A+TGS GKT Sbjct: 58 IAKGVKALLVSKHL-----PVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN GVP+TL R+ + + + ELG +H GEI + T Sbjct: 113 SVKEMTASILRQCGETLHTAGNLNNDFGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F +E +A AK EIF GL GT LN D + + + H Sbjct: 173 LVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGLPARGTAILNADSNDWPRWQENLH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G ++ + DF + + + + +++ G H N L Sbjct: 233 --GKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMHTPRGEADIILPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L GR R + ++D+SYNAN SM AA VL Sbjct: 291 ALALSVDAPLSAVQAGLKRLQSVPGRLFPVRLS---EHQLILDDSYNANVGSMVAAAQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ S+ FH ++ + V +G L + Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLSTGQFSHFLSE---S 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + L ++ L + V++K S S +++ L E+ Sbjct: 401 SGVGEHFSDKTALTERLRQLLSEHQEMTVLIKGSRSAAMEQVVQSLQEK 449 >gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] Length = 460 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 204/475 (42%), Gaps = 22/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M L + + Q QG Q + IS DSR I F A+ G +D HDF Sbjct: 1 MIAL-SLETIAQVTQGTLSTITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I QKGA V+VN + + P V D A+ +A R S A I+A+TGS Sbjct: 60 IADVKQKGAVAVLVNRKI-----DVECPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L +T G+ NN IGVPLTL R+ + F + ELG +H+GEI Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLTPEHRFAVIELGANHIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +V+P A++ + AH+ F ++ IA AK EIF GL++ GT +N + L + Sbjct: 175 YTVDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ + +S ADF + + + + G H N Sbjct: 235 QHFNSRQTQWSFSLSADTQADFYPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + + L+V GR ++D++YNAN SM A Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTG---KIVLDDTYNANDGSMMAG 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VLSQ+ G +I V GDM E+GE S+ H D+ I V G + + Sbjct: 352 LQVLSQLP----GYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQ 407 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 H + L + L DV V+VK S S ++N L E F Sbjct: 408 ENEGGEHFSF---KADLLTQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFE 459 >gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR 15-3] Length = 473 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 202/472 (42%), Positives = 285/472 (60%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G ++G +P+ +GISIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMDGFTVGCLPEV-FSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + + P+ V DV AL KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL + K +A + S NN GVPLTLARMP+D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALETAGKVHANLSSLNNCWGVPLTLARMPIDSDYGIFEIGMNHKDEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ ++T IA H+ F +EEIA AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ I SFG+S A++Q ++ S M V L K + + G HM QN L L Sbjct: 240 QCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + A++ + AL F ++GRG Y+ +L+ G + + SYNANPASM+AA+ + Sbjct: 300 AACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ +GRRIA+LGDM E+G+ S+ H DL E + + V+L G + L L Sbjct: 360 LATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMRVLASDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 I V++++ ++ +F + S + +GD++++KSS+ ++N +L + I Sbjct: 420 PHITVYHAQDIEEIFPLVFSEISNGDLIMIKSSHRIYLSNIVNEILSRYKVI 471 >gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Maricaulis maris MCS10] gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Maricaulis maris MCS10] Length = 474 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 182/466 (39%), Positives = 252/466 (54%), Gaps = 8/466 (1%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NPLWT + A G IG P V+GISID+R++ P + F A++ DGHDF+ A+ Sbjct: 7 NPLWTSGQAMAATGGMLIGE-PGWTVSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAM 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KGA +V P V D L L L AAR RS A +A+TGSVGKT+ Sbjct: 65 EKGASACLVERGDTGVE-----PALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTS 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KE L S + + SYNNH GVPLTLARMP D +FELGM+H GEIR L+ L Sbjct: 120 VKEALAAVFRSSGPAHWSVKSYNNHWGVPLTLARMPRDTGRAVFELGMNHAGEIRDLSSL 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL + +E IA AK+EIF+GLE+ G DD E + + Sbjct: 180 VRPHVALITRIAPAHLEHLGSVEAIADAKSEIFDGLEQDGVAIYPSDDPLAERIARHARH 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG S +A ++ +++ + S + G G H A N Sbjct: 240 SCAAFLLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFA 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVL 360 + D +ALS + GRG+ R A + G FTL+D++YNANP SM AAI+ L Sbjct: 300 AAAGAGLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAAL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P +GRRIAVLGDM E+G H +LA+ L+ + V G + L DALP+ Sbjct: 360 GAADPGPDGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGRRMKHLHDALPK 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ Y++ G ++S + GDVV++K SN G +++ ++LL+ Sbjct: 420 TVRAGYAQDAAGGLEQVKSLVRSGDVVLIKGSNGSGLHKIASVLLD 465 >gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] Length = 456 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 204/465 (43%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + + G + + G+S D+R I F + G +DGH+F AV+KG Sbjct: 5 TLETIAKIVGGTLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + I VD+ L A KLA + + A ++ ITGS GKT TK+ Sbjct: 65 AVATLWDKRHPTPYLDAGI--IIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L L + + + NN IGVP T+ M +D + + E+GM GEI+ LT++ RP Sbjct: 123 ILASILKENFRVHNTAKNLNNEIGVPKTIMEMDLDDEVVVLEMGMERFGEIKTLTNIARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVIT I +HL E IA AK EI EGL+ G N DD + + Sbjct: 183 DIAVITNIGDSHLLELGTKENIARAKFEILEGLKPDGVFIFNNDDEVLREVIKEYTI--T 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + G +++D +R + E S IG H N + + I Sbjct: 241 QKVIKIGTREDSDVIIRPIRSDEEGSSFS----IGEYAYSIPFIGKHQIYNASVAITIAG 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L + ++ LS R ++ F ++++ Y +NP S+ + I + + Sbjct: 297 LLGMNYGDIVRGLSRVKLTGMRM----ELIHLSSFDVLNDCYKSNPQSLTSCIETVYTMK 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + I +L DM E+GE + H + E + I +V G + + R+ +V Sbjct: 353 GYKNK--ILILSDMLELGENERKLHFSVGEKIDRNKIDYVICIGDLAKEIYNGANRNFNV 410 Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ET + + ++ + + +++VK S ++I +L E Sbjct: 411 NNLFHFETNEEVVNKVRELISEDTLIMVKGSRGMKLEKIIEMLKE 455 >gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + + G + G+SID+R + + I+G +DGH F+ A++ G Sbjct: 5 TLKQIEKMVNGTGLAEKYFDMTAQGVSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ ++PV V+D L AL LA R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWKRDV--QNPPANMPVIFVEDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + D + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEEDTEIAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + + IA AK EI GL++ G N D+ K Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPKMDLAVE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + + +G H N L ++ I Sbjct: 243 TI--TFGDARANDYYPTSVTLQATGTHFTMNRDENVLFY-LPVLGKHNVYNALASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKQGL---VTLQMTGMRMEVVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L ++ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEELVKNLKDIVDMEDVVLVKASRGMKMEEIITMLK 458 >gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] Length = 453 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 16/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++LL+A+ G I + N + ID+R I +FAI G ++G+ F++ A KG Sbjct: 3 LSLNELLEAMNGELIVKG-KTDFNSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKG 61 Query: 65 AGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +V+ + + ++ V V+D AL LA R + +I +TGS GKT+TK Sbjct: 62 ASIAIVDEILFDLNNTDNLQTVIKVEDTEKALLNLANYYRKKLGLKVIGVTGSCGKTSTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS K + G++NN IG+PL + + +D + E+GMS+LGEI L + R Sbjct: 122 DLIAAFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGEIDVLANCAR 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I +H+ N E I AK+EIF ++T T+ +N +D +K K + Sbjct: 182 PDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDENLLKIKDKCFEIL 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 G + D +++ V+ + + G H N ++ + + Sbjct: 242 K-----IGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGKHNILNSMLAVEVA 296 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D K + R + + T+I++ YNA+P SMK+++ V + Sbjct: 297 KKLNVTFDEMKKGIKNLEATSMRL----QVIKRNKITIINDCYNASPDSMKSSMDV---L 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S + GR+IA+LG M E+GE + HI++ L + + G + K + Sbjct: 350 SSYKTGRKIAILGTMNELGEEAVKSHIEVGNYA-LTKVDLLIAVGEYKDYFKKGF-TGEN 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + T + + + + + DVV+VK+S F +++ L E Sbjct: 408 IITFATKEECIDKLDTIIKENDVVLVKASRGMKFEDIVSSLEE 450 >gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. 1-1C] Length = 472 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 204/472 (43%), Positives = 285/472 (60%), Gaps = 2/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ A+ G +IG +P+ F G+SIDSR++ + FF IKG H DGHDF HA Sbjct: 1 MIALWDKQALISAMDGFTIGCLPEIFP-GVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG++VV + + + ++ P+ V DVL AL KLA AAR RSKA IIAITGSVGKT Sbjct: 60 YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L AL ++ K +A + S NN GVPLTLARMP+D D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ +IT IA H+ F +EEIA AKAEIFEGL+K G LN DD FF L K+ Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+S +AD+Q+++ + S M V K M + G HM QN L L Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + AD+ AL F ++GRG Y+ +L+ G + + SYNANP SM A+ + Sbjct: 300 AACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ G+RIA+LGDM E+G+ S+ H DL E + + V+L G + L L Sbjct: 360 LATGPIGVGGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLVGKEMGVLARDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + V+++E ++ +F + S + +GD++++KSS+ ++ +L + I Sbjct: 420 AYVTVYHAENIEEIFPLVFSEISNGDLIMIKSSHHIYLSNIVTEILNRYKVI 471 >gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] Length = 451 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 221/464 (47%), Gaps = 19/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+L A G + +N +S DSR + P F I G + H F+ A++ G Sbjct: 4 MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 G + A P+ V D L A+ ++A R + II ITGSVGKTTT+E Sbjct: 64 -GASLTQEHEQAEGP---HPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTRE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + +G+ N+ +GVPLTL R+ G+ E+GMS G+I L ++RP Sbjct: 120 MIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + AV+T + +H+ + I K +I GL + G ++LN D+ + K Sbjct: 180 NAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDND----MIRKHIGYVT 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 FG S++ ++ ++ Q+ + V+ + +G H N L + + Sbjct: 236 HPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKEPVILNVLGDHNVSNALAAIALGL 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T + L+ F + + L +T+ID++YNA+P SMKA + +LS Sbjct: 296 AYEVPMETIKRQLATFSG------QRQNILKIHGYTVIDDAYNASPDSMKAGLKILSDYK 349 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 GR+IAVL DM E+G S +H ++ E L +I+ ++++G +A + S Sbjct: 350 DS--GRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKKYAEAAQKKNLS 407 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + D L +++ L + DVV++K+SN Y + L Sbjct: 408 LKTKWFSSNDELISYLKDYLKENDVVLIKASNGMKLYEVAKALE 451 >gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC 35316] gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cancerogenus ATCC 35316] Length = 452 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 213/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T ++G G ++ ++ D+R + F A+KG +D HDF+ A Sbjct: 1 MISI-TLSQAAAILKGTLQGQ--DLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KENGAGALLVSRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L T G+ NN IGVP+TL R+ + +F + ELG +H GEI + Sbjct: 113 SVKEMTAAILGQCGNTLYTAGNLNNDIGVPMTLLRLTKEHEFAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L P A++ +A AHL F +E +A AK EI+ GL G +N D++ + ++ Sbjct: 173 LTCPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGLPADGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + + ++V+ G H N L Sbjct: 233 SRKTWR--FSPNAANSDFTATNIHVTSHGTEFTLNTPTGGVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A D L+ GR A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGASHDAIKTGLANLKAVPGRLFPIPLAEN---KLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ S++ HI + E + V +G A+ A Sbjct: 348 SEMP----GYRVMVVGDMGELGDESEACHIQVGEAAKAAGLDCVLSAGKLSQAISQA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + T L + + + + + V+VK S S +++ L E Sbjct: 401 SGVGEHFATKAELIERLNALIAEKQIVTVLVKGSRSAAMEEVVHALQE 448 >gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] Length = 446 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + + G +S D+R+I P F A++GP++D +DFI A ++ Sbjct: 1 MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN + ++P+ V D L AL +LA R + I +TGS GKTTT+ Sbjct: 59 GAVGAVVNR-----VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L A S+NN+IGVPLTL R+ D + + ELG +H GEI +LT L + Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT P HL F +E +A AK EIFEGL GT +N DD F E + +H+ Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I SFG ++ AD + S+ ++ L +E+ IG H N L Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D L P +GR + +ID+SYNANP S+ AAI+VL+ Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G + VLGDM E+G+ ++ FH ++ + + ++ G +A Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAF--GK 401 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + L +++ L VV+VK S S + + LLEE Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSFSMRMGNIAHALLEE 446 >gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 446 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + + G +S D+R+I P F A++GP++D +DFI A ++ Sbjct: 1 MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN + ++P+ V D L AL +LA R + I +TGS GKTTT+ Sbjct: 59 GAVGAVVNRAV-----KTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L A S+NN+IGVPLTL R+ D + + ELG +H GEI +LT L + Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT P HL F +E +A AK EIFEGL GT +N DD F E + +H+ Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRPLAHSR- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I SFG ++ AD + S+ ++ L +E+ IG H N L Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D L P +GR + +ID+SYNANP S+ AAI+VL+ Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G + VLGDM E+G+ ++ FH ++ + + ++ G +A Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAF--GK 401 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + L +++ L VV+VK S S + + LLEE Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446 >gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Clostridium botulinum F str. 230613] Length = 462 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 118/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L+ K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ Q + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 IA+LG M E+G H +++E I ++ G A ++ Sbjct: 357 KGKR---TIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] Length = 457 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 128/469 (27%), Positives = 199/469 (42%), Gaps = 16/469 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M T ++ Q I+ + + G+SIDSR I F KG + DGH F+ Sbjct: 1 MIK-KTLQEIEQMIKIENDVSSFHNTSIQGVSIDSRKIGRGNLFVPFKGENSDGHRFVED 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++KGA D+ L +P+ V+D L AL +LA + R K + ITGS GK Sbjct: 60 AIEKGAAAAFWQKDV--PNPPLHLPILIVEDTLTALQELARSYRDELKIKVAGITGSNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M LS K G+YNNHIG+PLT+ + D + + E+GMS GEI FLT Sbjct: 118 TTTKDMTANLLSLQYKVQKTEGNYNNHIGLPLTILALEEDTEIAVLEMGMSGRGEIDFLT 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP +IT I +HL + E IA AK EI GL++ G + D+ + Sbjct: 178 KLARPDAVIITNIGESHLQDLGSREGIAEAKLEIVNGLQENGLVIYYGDEPLLDEKLKSY 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG++ D KQ S + + + G + M Sbjct: 238 NGSAALR--TFGRTGKNDVYPMDIKQNDSGSTFGINVSSGKFYLPVLGTHNVLNALAAM- 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 K F + R Q +I+++YNA+P SM AAI + Sbjct: 295 ----IAAAHFGVPYEKMNEGFASLKLTNMRMELLEGQSGEKIINDAYNASPTSMNAAIEL 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ + + + I VLGDM E+G + FH + + + +V+ G + Sbjct: 351 IANLPGYKKK--ILVLGDMLELGPQEEDFHYSTGKSVDPEKVDYVFTFGKLGEYIAKGAK 408 Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V L ++ + +++VK+S +++ L Sbjct: 409 EVLPHERVAAFTDKQPLIEELKKHVDPETIILVKASRGMKLEEVVSALQ 457 >gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 175/476 (36%), Positives = 246/476 (51%), Gaps = 18/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G V G+SID+R++ P + F A+ DGHDF+ A Sbjct: 1 MSALWTGVEAAAATGGRLTR---DFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ V + P+ VDDVL AL + AAR R+KA I+A+TGSVGKT Sbjct: 57 LEKGAAAALVSR--VPEGLPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L++ +T+A SYNNH GVPLTLARMP D ++G+ ELGMSH GEI L+ Sbjct: 115 STKEMLRTVLAAAGRTHASEASYNNHWGVPLTLARMPADTEYGVLELGMSHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+PH+ VITT+A AH F IE IA KA IFEGL GT +N D + +L A + Sbjct: 175 MVQPHVGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAK 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + +FG++ +L + + + + + G H A N L + Sbjct: 235 DKGA-RVITFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGRHFAVNALAVI 293 Query: 301 GIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L D A+ AL+ + P + F LID++YNANP SM AA Sbjct: 294 AAADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSMAAA 353 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P GRR+AVLGDM E+G + H LAE +L + G Sbjct: 354 LDVLALSEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHALTAADLIVCVGTR 413 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + AL ALP + ++ T + + I GDVV+VK S +++ L + Sbjct: 414 MKALHAALP-AERAYWLATPEEILPHITRIADAGDVVLVKGSKGSRVSIIVDALRK 468 >gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] Length = 481 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Clostridium botulinum H04402 065] Length = 462 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI ++ +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMSEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ Q + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 IA+LG M E+G H +++E I ++ G A K+ Sbjct: 357 KGKR---TIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYKEGFEEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNQEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] Length = 477 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 184/468 (39%), Positives = 256/468 (54%), Gaps = 4/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT ++ +A+ V G+SIDSR++ + F AIKG DGH FI A Sbjct: 8 KPLWTGAEIARALG--IAPPAADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAF 65 Query: 62 QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA +V+ D + + P+F VDD AL +L AR R+ A I A+TGSVGKT Sbjct: 66 DNGAAGALVSRDYAPQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKT 125 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML + L T+A + SYNN +GVPL+LARMP FG+FE+GM+H GEI L Sbjct: 126 TTKEMLRVMLGESGPTHASVKSYNNFMGVPLSLARMPAASRFGVFEIGMNHAGEIVPLAK 185 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH+A++T +AP H+ F+ EIA AKAEIFEGLE+ G L D+ FE L A Sbjct: 186 LVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPADNPHFESLAA-FA 244 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + FG S A+ +L +++ E S + + + + G H+AQN + L Sbjct: 245 RERSARVVPFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPGRHLAQNAVAAL 304 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 VS+L +V+ A AL+ F EGRG+ +G +IDESYNANPASM AA+ VL Sbjct: 305 AGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNANPASMHAALDVL 364 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P RRIAVLGDM E+G + FH LA + I V+ +G + +L ++LP Sbjct: 365 GAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVFCAGPLMASLHESLPA 424 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++ + L + ++ GD V++K S ++ L F Sbjct: 425 EKRGGWANASEDLRGPVLDAVCGGDAVMIKGSLGSRMGQIAEALKARF 472 >gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella neotomae 5K33] gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] Length = 481 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. 83/13] gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] Length = 481 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 452 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 212/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T +QG G + ++ D+R + F A+KG +D HDF A Sbjct: 1 MISI-TLSQAAAVLQGMLHGQ--DLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + + ++A+TGS GKT Sbjct: 58 KDNGAGALLVSRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + ++ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTHEHEYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPDDGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + + +EV+ G H N L Sbjct: 233 SRKTWR--FSPNAANSDFSATNIHVTSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGASHAAIKAGLANLKAVPGRLFPIQLAEN---KLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ S++ H+ + E + V +G A+ DA Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEACHVQVGEAAKAAGLDRVLSAGTLSKAISDA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L +++ + + + V+VK S S +++ L E Sbjct: 401 SEVGEHFADKSALIERLKALITEKQIVTVLVKGSRSAAMEEVVHALQE 448 >gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar Abortus 2308] gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin Cpn60:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus 2308] gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis M5-90] Length = 481 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] Length = 501 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 136/465 (29%), Positives = 219/465 (47%), Gaps = 18/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D++ A G + + G+ IDSR + F + G DGH FI A+++ A Sbjct: 51 TVKDIVNATGGFLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEPAMER-A 109 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + I P VDD + AL + R R I +TGSVGKTTT+EM Sbjct: 110 SATLTSEHDNVVISEK--PFIRVDDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREM 167 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + A+ + + + G+ N+ IGVP+TL+RM D + E+G+S G++ L+ +VRP Sbjct: 168 IAAAVGTGRHCFQTNGNENSQIGVPMTLSRMTDGYDAAVIEMGISEPGQMEILSDIVRPS 227 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V+T I AH+ E I K I +++ G + LN DD +K Sbjct: 228 ICVVTMIGVAHIEFMKTQENIRDEKLSIVNHMKENGLLLLNGDDPLLREIKDDM----SC 283 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG + DFQ + + + G+++ VV +G H +N L + + Sbjct: 284 QTLTFGIDEVCDFQGSDVQCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGIAVAYQ 343 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + TA KA F +R R + +T++D++YNA+P SMKA+I VL + Sbjct: 344 LGIPMATAAKAFEHFEG-----QRQRIIRMENRYTILDDTYNASPDSMKASIDVLCDL-- 396 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421 +G++ AVL DM E+G+ S S+H + E L I V + G L +K AL Sbjct: 397 DCKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVVGEKALDIKKALDECDTKY 456 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + L++ + + D+V++K SNS ++ +L Sbjct: 457 AKTFSFMDNEEVALYLMAIMKPEDIVLLKGSNSMKLNEIVKILTN 501 >gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] Length = 481 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 LTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] Length = 451 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 204/461 (44%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + +NG+SIDSR I F KG + DGH FI A+ GA Sbjct: 5 TLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G V + + P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAVFSEKENR-YSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ K G+YNN IG+PLTL + D + I E+GMS +I L+++ +P Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ + E IA AK EI GL+ G + D+ LLK + Sbjct: 184 IAIITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVTQVKDA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + + + +E + + + NM ++I Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + H + R + T+I+++YNA+P SMKAAI LS + Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424 GR+I +L D+ E+G SQ H + E L NI ++ G + D+ Sbjct: 354 ---GRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + L + S + D V+VK S +++ LL Sbjct: 411 KHFDQKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451 >gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 452 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +QG G ++ ++ D+R + F A+KG +D HDF A Sbjct: 1 MISL-TLGKAATLLQGTLHGQ--DLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++VN + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KENGAGALLVNRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + DF + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F +E +A AK EI+ GL G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGLPDNGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + ++DF S + + +EV+ G H N L Sbjct: 233 SRKTWR--FSPNAADSDFTATHIHVTSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGATHDAIKTGLANLKAVPGRLFPVQLAEN---KLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ S++ HI + E + V +G A+ A Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEACHIQVGEAAKAAGLDCVLSAGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L +++ + + + V+VK S S +++ L E Sbjct: 401 SGVGEHFADKAALIERLKTLIAEKQIVTVLVKGSRSAAMEEVVHALQE 448 >gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] Length = 481 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 221/472 (46%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP S++AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G + H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I + Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQIEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] Length = 462 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 113/462 (24%), Positives = 210/462 (45%), Gaps = 13/462 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGAS 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S V V+ AL LA + + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFDKEKIGKSSYVIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK E+ + K + +N D+ ++ + + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLSNFESDKYKVCK- 244 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K + + + ++ S + + Q + + G H N L + + Sbjct: 245 --IGTEKKFDFNGENLNLEEESIEFDVLEQGETAYKGFNVNVPGKHNVLNSLTAIACGKV 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + + + R + FT+I++ YNA+P SMKAAI V+ + Sbjct: 303 LDMNYEDIQTGIKNLKATSMRLDIIKEKG----FTIINDCYNASPDSMKAAIDVMKNVKG 358 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423 IA+LG M E+G H +++E I ++ G A K+ + Sbjct: 359 KR---TIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYKEGFEEINKEN 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +I++ + DGD+++VK+S + ++ L Sbjct: 416 YKSFLNNEEAAKYIKNIIKDGDIILVKASRAMKLEEIVKELR 457 >gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580] gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580] Length = 491 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 143/465 (30%), Positives = 214/465 (46%), Gaps = 19/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + +G + G+S DSR +A + F + G ++GH F A Q+G Sbjct: 40 TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEG 99 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ N PV VDD L AL KLA A R + ++ +TGS GKTTTK+ Sbjct: 100 VAAVLWNR--SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKD 157 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + K + G+YNNHIG+PLT+ MP D + I E+GMS GEI FLT L RP Sbjct: 158 MIHAVLGTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARP 217 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVIT I +HL E IA AK EI GL K GT+ D+ L + Sbjct: 218 DIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEP----LLTERLNQPP 273 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG+ D+QL Q E + V+ + G N+ L ++ Sbjct: 274 YDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFFIPVLGKH-----NVKNALAAIA 328 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + G R +I+++YNA+P SMKAAI ++ Q+ Sbjct: 329 AGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQM- 387 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G G++I VLGDM E+GE ++FH ++ + ++ +I ++ G + + Sbjct: 388 -KGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPE 446 Query: 425 HYS-----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H E D L ++ GD+++VK+S +I L Sbjct: 447 HRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 491 >gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 456 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 143/465 (30%), Positives = 214/465 (46%), Gaps = 19/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + +G + G+S DSR +A + F + G ++GH F A Q+G Sbjct: 5 TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+ N PV VDD L AL KLA A R + ++ +TGS GKTTTK+ Sbjct: 65 VAAVLWNR--SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + K + G+YNNHIG+PLT+ MP D + I E+GMS GEI FLT L RP Sbjct: 123 MIHAVLGTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVIT I +HL E IA AK EI GL K GT+ D+ L + Sbjct: 183 DIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEP----LLTERLNQPP 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG+ D+QL Q E + V+ + G N+ L ++ Sbjct: 239 YDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFFIPVLGKH-----NVKNALAAIA 293 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + G R +I+++YNA+P SMKAAI ++ Q+ Sbjct: 294 AGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQM- 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G G++I VLGDM E+GE ++FH ++ + ++ +I ++ G + + Sbjct: 353 -KGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPE 411 Query: 425 HYS-----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H E D L ++ GD+++VK+S +I L Sbjct: 412 HRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 456 >gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus epidermidis FRI909] Length = 451 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 204/461 (44%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + +NG+SIDSR I F KG + DGH FI A+ GA Sbjct: 5 TLEQIKNWIDCEIDEKHLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G V + + P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAVFSEKENR-YSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ K G+YNN IG+PLTL + D + I E+GMS +I L+++ +P Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK EI GL+ G + D+ LLK + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVTQVKDA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + + + +E + + + NM ++I Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + H + R + T+I+++YNA+P SMKAAI LS + Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424 GR+I +L D+ E+G SQ H + E L NI ++ G + D+ Sbjct: 354 ---GRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + L + S + D V+VK S +++ LL Sbjct: 411 KHFDQKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451 >gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 462 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 208/464 (44%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LAEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + S V V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VGAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK E+ + K + +N DD F ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ Q + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RALDINYKDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 IA+LG M E+G H +++E I ++ G A ++ Sbjct: 357 KGKR---TIALLGSMRELGNEGYRAHREVSEYAREKGIDLLFSIGEFGEAYREGFGEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNKEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 453 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + +GD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfotomaculum reducens MI-1] gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 457 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 131/467 (28%), Positives = 215/467 (46%), Gaps = 17/467 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ Q I G + P + GI DSR P+E F A++G DGHDF A+++G Sbjct: 4 YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++V+ ++ + IPV V + L AL +LA R R ++A+TGS GKT+TK+ Sbjct: 64 ASALLVSREITG--IAPQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L++ KT G++NN +G+PLTL + + + E+GM GEI FL L +P Sbjct: 122 MIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDFLAGLAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AVIT I AHL +E IA AK E+ + + G LN D + L Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGELARNCQG--- 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ + D Q + + G E+ G H N L +G+ Sbjct: 239 -KVWLYSLEGIGDLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVGL 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L ++ + L+ R L+ +I+++YNANP+S KAA+ VL + + Sbjct: 298 QLGLQLEEIAQGLAQLCLTHSRL----QILSSNGRVIINDTYNANPSSTKAALKVLKETA 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 + IAVLG+M E+G+L QS H ++ E + + ++ G + + Sbjct: 354 RSRK---IAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGNLAQWITQGGLKGGLS 410 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + + L GD ++VK S ++ ++++ Sbjct: 411 QERVFQCQENSEAVEVLGKILKPGDTILVKGSRGMHMEYIVREIMKD 457 >gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mesorhizobium sp. BNC1] gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chelativorans sp. BNC1] Length = 477 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 213/470 (45%), Positives = 293/470 (62%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT DL+ A+ G G +P+G V GISIDSR++ EAFFAIKG +DGHDF A Sbjct: 1 MTLLWTSDDLVAAVGGRPFGALPEG-VTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAGL+V++ + + ++G L++P V DVL AL LA AAR RS+ +IA+TGS GKT Sbjct: 60 MAAGAGLLVISEEKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML ALSS+ +A S+NNH GVPL+LAR+P DF IFE+GM+H GEI LT Sbjct: 120 TTKEMLRHALSSVGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPLTQ 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+PHIA++T IA AHL +F ++EIA AK EIF G+ G +N DD F+LL + Sbjct: 180 LVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADMAA 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ ++ FG++ + F+L + + + S + +++ G+ + G HM QN L + Sbjct: 240 EAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIGAPGRHMVQNALSVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G + ADV + AL F + GRGK + + +G FTLIDESYNANPASMKAA+ VL Sbjct: 300 GAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANPASMKAALQVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 GRRIAVLGDM E+G S+ H L ++++ + L+G + AL D P Sbjct: 360 DSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLLAGTEMKALADNAPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 V Y T++ L + L GD ++VKSSN G RL+++LL+ +PA Sbjct: 420 GRLVEYRPTVEELQPLLLELLQPGDAIMVKSSNGIGLSRLVDVLLKNYPA 469 >gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] Length = 473 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 200/467 (42%), Gaps = 14/467 (2%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + G + G+ DSR+I P F I G +DGH+F+ + G Sbjct: 5 SLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG D +P+ V+D L AL LA S+A ++ ITGS GKTT K+ Sbjct: 65 AGAAFWQRDHQP--VPADLPLILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ L + + G+YNNHIG+PLT+ M D D + E+GMS EI L+++ RP Sbjct: 123 MVSALLETTYNVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHAL 242 + VIT + AHL EEIA AK EI G++ G + + D+ + ++ Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKP 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 Y+FG D + + + N++ L Sbjct: 243 EGLRTYTFGNQDTNDDYPTGLMFHARGIIFT----SRLHAGEGFSLPLLGRHNVVNALAA 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +++ S F + R T+++++YN++P ++KAA+ VL Sbjct: 299 MAVAAHLGIGDEAIRSGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGD 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419 + + IAVLGDM E+G+ +SFH ++ + LS N V+ G L + Sbjct: 359 MKGYRRR--IAVLGDMLELGQREESFHAEIGDYLSPDNADLVFTYGPLSLHTANKAKARF 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L + + + D+V+VK+S +++ L Sbjct: 417 PEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRGMRLEHVVDALKA 463 >gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662] gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662] Length = 451 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 222/464 (47%), Gaps = 19/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+L A G + +N +S DSR + P F I G + H F+ A++ G Sbjct: 4 MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 G + A P+ V D L A+ ++A R + II ITGSVGKTTT+E Sbjct: 64 -GASLTQEHEQAEGP---HPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTRE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + + +G+ N+ +GVPLTL R+ G+ E+GMS G+I L ++RP Sbjct: 120 MIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + AV+T + +H+ + I K +I GL + G ++LN D+ + K Sbjct: 180 NAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDND----MIRKHIGYVT 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 FG SK+ ++ K+ + Q+ + V+ + +G H N L + + Sbjct: 236 HPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMREPVILNVLGNHNVSNALAAIALGL 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++T + L+ F + + L +T+ID++YNA+P SMKA + +LS Sbjct: 296 AYDVPMETIKRQLATFSG------QRQNILKIHGYTVIDDAYNASPDSMKAGLKILSDY- 348 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 GR++AVL DM E+G S +H ++ E L +I+ ++++G +A + S Sbjct: 349 -QDSGRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKEYAEAAQKKNLS 407 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + D L +++ L + DVV++K+SN Y + L Sbjct: 408 LKTKWFSSNDELISYLKDYLKEHDVVLIKASNGMKLYEVAKALE 451 >gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] Length = 461 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 212/475 (44%), Gaps = 21/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M PL + +++Q +G I + IS DSR I F A+ G +D HDF Sbjct: 1 MIPL-SLGNIVQITKGKLSNIAQNQADQLIIKSISTDSRKIDEDCLFIALAGERFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I +KG+ V+VN ++ + P V D A+ ++A R S A I+A+TGS Sbjct: 60 IADVKEKGSVAVLVNREI-----DVDCPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L +T G+ NN IGVPLTL R+ + F + ELG +H+GEI Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLAPEHRFAVIELGANHIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + ++V+P A++ + AH+ F +E IA AK EIF L++ GT +N D + L + Sbjct: 175 YTVNMVKPDSALVNNLFSAHIEGFGSLEGIAQAKGEIFTHLKEQGTAIINLDSNDLPLWE 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 +A K +S +NADF + + + +EV G H N Sbjct: 235 HHLNARQTKWSFSLSAQRNADFYPTEIAVKQFITNFTLHTPEGCVEVTLPLPGRHNIANA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + A ++ LS GR + ++D++YNAN SM A Sbjct: 295 LAASALALSAGATLEDIRLGLSTLKAVPGRLYPVELTTGKM---VLDDTYNANDGSMIAG 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VLSQ+ + V GDM E+G+ S+ H D+ I V G H + D Sbjct: 352 LQVLSQLPGYK---IFFVAGDMAELGKDSEKCHRDVGRFAHNAGIDSVLTVGEHSHFISD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 H + L + L DV V+VK S S ++N L E F Sbjct: 409 ENQGGQHFAF---KADLLAQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFE 460 >gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] Length = 473 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 197/471 (41%), Positives = 285/471 (60%), Gaps = 2/471 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW L+ AI G IG +P+ +GISIDSR++ + FF IKG H DGHDF A Sbjct: 1 MTALWDKQALIAAIDGFVIGCMPET-FSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GAG+++V + + + +S P+ V DVL AL KLA AAR RS+A IIAITGSVGKT Sbjct: 60 YARGAGVLIVAENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L+++ K +A + S NN GVPLTLARMPV+ D+GIFE+GM+H EIR L Sbjct: 120 TTKEALKQVLATVGKVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHADEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+ ++T IA H+ F ++ IA AKAEIFEGL++ G LN D+ FF L K+ Sbjct: 180 LVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEGLDEEGVALLNADNGFFSYLVRKAK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+K I SFG+++N+D+Q R + ++ S M V + G+ + G H+ QN L + Sbjct: 240 QCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGRHIVQNSLAVI 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 ++ D +LS F ++GRG RY+ L G + + SYNANPASM+AA+ + Sbjct: 300 AACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNANPASMRAALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GRRIA+LGDM E+G S+ H DL + + + + V+L G + L L Sbjct: 360 LATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFLFGEAMKFLAIDLS 419 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + V+Y+E ++ + I + + +GD++++KSS S ++ LL+ + Sbjct: 420 AYVKVYYAENIEKILPLIFAEISNGDLLMIKSSRSLYSSDIVTALLDHYKV 470 >gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 453 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + +GD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] Length = 458 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 135/443 (30%), Positives = 208/443 (46%), Gaps = 12/443 (2%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + V+G+ IDSR I + + G H DGH ++ A ++GA + D+ + Sbjct: 24 NETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQKDV--PNPPAN 81 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +P+ V+D +L +L+ + R +A ++ ITGS GKTTTK+M+ LS K G+ Sbjct: 82 VPLLIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFKVQKTEGN 141 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NNH GVPLTL + D + + E+GMS GEI FLT + RP +A+IT I AH+ N Sbjct: 142 FNNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGS 201 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E IA AK EI EGL + G + D+ LL+ + + +FGK D + Sbjct: 202 REAIADAKLEITEGLPENGLLIYMGDEP---LLQERVPNITGIRTKTFGKGHGNDLYPVE 258 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 WKQ + S G +G + N L + + L Sbjct: 259 WKQETSGSTFRTNASGDIDFY-LPVLGEYNVINSLAAILAGREFGMPFEEIRAGLGKTRL 317 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R A +I+++YNA+P SM+AAI ++ Q G GR+I VLGDM E+G Sbjct: 318 ---SAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQF--EGTGRKILVLGDMLELG 372 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSL 441 E +FH ++ L+ I V+ G + +A V E L ++ + Sbjct: 373 EKEAAFHREVGRDLNPEKIDFVFTYGKLGRLIAEACDFPDNRVFAFEDKKRLIDMLKGKI 432 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 GD+V+VK+S ++ + Sbjct: 433 GAGDLVLVKASRGMQLEEVVKAI 455 >gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] Length = 453 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 209/468 (44%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P +IT I +H+ E I AK EI +K T+ + +D F L Sbjct: 180 EIASPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPNAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLCFGDFSKNIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M644/93/1] gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M13/05/1] gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M490/95/1] gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti B1/94] gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella sp. F5/99] gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] Length = 481 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 224/472 (47%), Positives = 305/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHLS+F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] Length = 457 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 222/465 (47%), Gaps = 13/465 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L F ++++A++G N IS D+R I F A+KG +++ +D+I+ A K Sbjct: 3 LLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASVK 62 Query: 64 GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G+ L +V+ S + + + V++ AL LA R + +I ITGS GKT+T Sbjct: 63 GSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++ ALSS K + G++NN +G+PL + + D + E+GMS+ EI L + Sbjct: 123 KDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFDEIHRLAKVA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P IA+IT I +H+ N E I AK EI + + + +N ++ + +K+ Sbjct: 183 KPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKENDLLKTVKS----- 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + S G K+ D+ V + + G H N ++ + Sbjct: 238 NDYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGKHNILNSMLAIVA 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + D + + + + FT++D+SYNA+P SM+AAI V++ Sbjct: 298 GRTLGIEYDKLKQGIKNLS----VTSMRLDIVKKDGFTIVDDSYNASPDSMRAAIDVINT 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I + + IA+LG M E+G+ S FH ++AE NI + G A K+ I Sbjct: 354 IKGNRK---IAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVGEFNEAYKEGYNNDI 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +T++ FI ++L D+++VK+S S F ++N L ++ Sbjct: 411 NFMAFDTIEDASDFITNNLNKEDIILVKASRSMKFEYIVNKLKDK 455 >gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 452 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S PV V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNTLVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + + L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTNDLKAHDCVLVKGSRGMKLEEVVNALI 451 >gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis HI4320] gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus mirabilis HI4320] Length = 460 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 139/475 (29%), Positives = 204/475 (42%), Gaps = 22/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M L + + QG Q + IS DSR I F A+ G +D HDF Sbjct: 1 MIAL-SLETIALVTQGTLSTITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I QKGA V+VN + + P V D A+ +A R S A I+A+TGS Sbjct: 60 IADVKQKGAVAVLVNRKI-----DVECPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L +T G+ NN IGVPLTL R+ + F + ELG +H+GEI Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLTPEHRFAVIELGANHIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + ++V+P A++ + AH+ F ++ IA AK EIF GL++ GT +N + L + Sbjct: 175 YTVNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ + +S ADF + + + + G H N Sbjct: 235 QHFNSRQTQWSFSLSADSQADFYPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + + L+V GR ++D++YNAN SM A Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTG---KIVLDDTYNANDGSMIAG 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VLSQ+ G +I V GDM E+GE S+ H D+ I V G + + Sbjct: 352 LQVLSQLP----GYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQ 407 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 H + L + L DV V+VK S S ++N L E F Sbjct: 408 ENKGGEHFSF---KADLLTQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFE 459 >gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 453 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 212/468 (45%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+IR L Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIRELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L+ R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 IKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + + L + + + +GD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YKNKEELINDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] Length = 460 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 135/475 (28%), Positives = 209/475 (44%), Gaps = 22/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M PL T L + G Q +N + IDSR + F A+KG +D HDF Sbjct: 1 MIPL-TLKQLTKLTGGVLYHTSEQQAATCQINTVEIDSRKMVRGGLFIALKGEKFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + ++GAG ++VN + + P V++ A+ KLA R +SKA I+A+TGS Sbjct: 60 VADVAKQGAGALLVNRRL-----EIDCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L T G++NN IGVPLTL R+ + F + ELG +H+GEI Sbjct: 115 SGKTSVKEMTAAILCQRGHTLYTAGNFNNDIGVPLTLFRLTEEHQFAVIELGANHIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + P A++ + AHL F + +A AK EIF GL GT +N D + + + Sbjct: 175 YTAEMTCPESALVNNLFAAHLEGFGSLAGVAKAKGEIFAGLSSAGTAIINLDSNDWTHWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ ADF ++ + + ++EV G H N Sbjct: 235 QGMSEPQAVWRFAVSPVPEADFYATDIQEQPLATSFCLHTPIGNIEVTLPLPGKHNIANA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L P GR R A ++D++YNAN SM AA Sbjct: 295 LAASALAISVGASLSDIRAGLLELKPVSGRLFPIRLAEG---KIVLDDTYNANIGSMIAA 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + LSQ+ G + V+GDM E+G+ + H + E L+ I + G + + Sbjct: 352 ANTLSQMP----GYHVMVVGDMGELGDQTVECHRQVGEALASTKIDKIMSVGEFSSHISE 407 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 S + L + L ++ +++K S S ++N L E F Sbjct: 408 ---TSGRGQHFANKAELVAALLPLLEQHEMISILIKGSRSAAMEEVVNTLKENFQ 459 >gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] Length = 481 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 453 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 456 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 212/468 (45%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 4 MLEL-NLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEA 62 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 63 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 123 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 182 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L + Sbjct: 183 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGSLPSAE 242 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 243 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 297 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L+ R + + F+++++ YN++P ++K+AI V Sbjct: 298 IAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 354 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 410 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 411 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 456 >gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 453 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 211/468 (45%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L + Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPSAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLILG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 455 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 129/467 (27%), Positives = 218/467 (46%), Gaps = 18/467 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ +F + ++ + G + P V G++ID R + P AF A G DGH F+ Sbjct: 1 MTPM-SFANFVRVVGGTPVLHEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A ++GA + VV D+ ++G P V + L A+ LA R + + ++ ITGS GK Sbjct: 60 AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM+ L ++ + NN +G+PLT+ + + E+GM LG+I L Sbjct: 116 TTTKEMVAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP+I VIT I H+ E IA AK E+ L G LN DD + ++ ++ Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRT 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + +G + D + E EV + + +G H N L Sbjct: 236 SARILW----YGMGEGCDIRATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNALAA 291 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + L + + + ++ G T+ID++YNA+P+S+ A++ V Sbjct: 292 IAVGQTLGISLGDIQIG----LGRVEAQRGRLRLVDAGDVTVIDDAYNASPSSVGASLEV 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I+ G R+AVLGDM E+GE++ H ++ ++ + + G + + A Sbjct: 348 LERIA--RPGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCVGVLAVEMARAAE 405 Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + V + ++ L + S L GDVV+VK+S R ++ + Sbjct: 406 EAGVPVVRHFNALEELLASVGSYLQPGDVVLVKASRGVQLDRAVDAI 452 >gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] Length = 466 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 179/466 (38%), Positives = 257/466 (55%), Gaps = 11/466 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT ++ A G + G V+G+SID+R+IAP + F A+K DGHDF+ A Sbjct: 1 MT-LWTANEAAAATGGRAQG---DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V+ V P+ VDDV L L A+R R+ A ++A+TGSVGKT Sbjct: 56 LEKGAGAALVSR--VPEGVPADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L Sbjct: 114 STKEMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPH+A++TT+A HL F +E IA KA I EGLE G LN D + +L+ + Sbjct: 174 PARPHVAMVTTVAAVHLEAFDNVEGIAREKAAIMEGLEPGGVAVLNADIAEAHVLRDVAS 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LG+ + +D+ L E++ G+ +E+ +G H A N L L Sbjct: 234 DLGVSARWF--GESASDYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V L AD A +L+++ P +GRG R L G TL+D+SYNANP SM AA++VL Sbjct: 292 ACVEALGADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+GRRIA GDM E+G H LA++ ++ I + G + AL +ALP Sbjct: 352 AATP--GQGRRIAYAGDMKELGPQEVELHAGLADLDAVKGIDKIHCIGPLMRALHEALPE 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +T + S + GD+V+ K S S ++++ + E Sbjct: 410 GKRGGWYQTSAEAVPGLASEIQGGDIVLAKGSLSMALAKIVDGIRE 455 >gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] Length = 481 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 222/472 (47%), Positives = 303/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 AGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AADAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 453 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 211/468 (45%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L + Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLVVCGNDDFLGALPSAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + +GD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453 >gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] Length = 446 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + + G +S D+R+I P F A++GP++D +DFI A ++ Sbjct: 1 MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN + ++P+ V D L AL +LA R + I +TGS GKTTT+ Sbjct: 59 GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L A S+NN+IGVPLTL R+ D + + ELG +H GEI +LT L + Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT P HL F +E +A AK EIFEGL GT +N DD F E + +H+ Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I SFG ++ AD + S+ ++ L +E+ IG H N L Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D L P +GR + +ID+SYNANP S+ AAI+VL+ Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G + VLGDM E+G+ ++ FH ++ + + ++ G +A Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAF--GK 401 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + L +++ L VV+VK S S + + LLEE Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446 >gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens str. 13] gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium perfringens str. 13] Length = 453 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++++A +G + + +S D+R I F A+KG +++G++++L A Sbjct: 1 MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59 Query: 61 VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA + +V+ + + + V + AL LA R + ++ ITGS GK Sbjct: 60 FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ LS K + G++NN IG+PL + + D I E+GM LG+I+ L Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P + +IT I +H+ E I AK EI +K T+ + +D F L Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G +N + S V K E G H N+++ Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + L R + + F+++++ YN++P ++K+AI V Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + I RRIAVLG M E+G S+ H ++ + I V G +K+ Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGNFSENIKEGYG 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V E + L + + + DGD+++VK+S S F + LLE+ Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453 >gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] Length = 460 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 219/475 (46%), Gaps = 22/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M PL T L + +G + Q +N + DSR I F A+KG +D HDF Sbjct: 1 MIPL-TVQQLSRLTEGTLYHVTEQQAAALQINTVKTDSRKIVCGGLFIALKGEKFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 V++GAG ++V+ + + P V D A+ KLA R +SKA ++A+TGS Sbjct: 60 AADVVKQGAGALLVSRRL-----DIDCPQVVVKDTRLAMGKLAGWVRQQSKARVVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L T G++NN IGVPLTL R+ + F + ELG +H+GEI Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNFNNDIGVPLTLFRLTEEHQFAVIELGANHIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + RP A++ + AHL F + +A AK EIF GL GT +N D + + + Sbjct: 175 YTTAMTRPESALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAPEGTAIINLDSNDWGNWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 +S + ADF + + + +E++ G H N Sbjct: 235 HGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGKIELILPLPGRHNVANA 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A ++ LS GR + T++D++YNAN SM AA Sbjct: 295 LAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSAG---KTVLDDTYNANTGSMIAA 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 +VLSQ+S G R+ V+GDM E+G+ + H ++ + ++ NI V+ G + D Sbjct: 352 ANVLSQMS----GYRVMVVGDMGELGKQAAECHREVGKAVATTNIDKVFSVGTLSSHISD 407 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 A S + L + L ++ +++K S S ++N L E F Sbjct: 408 A---SGRGQHFANKTELVAALLPLLEQHEMISILIKGSRSTAMEEVVNALKENFQ 459 >gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 446 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 139/464 (29%), Positives = 213/464 (45%), Gaps = 18/464 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + + G +S D+R+I P F A++GP++D +DFI A ++ Sbjct: 1 MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN + ++P+ V D L AL +LA R + I +TGS GKTTT+ Sbjct: 59 GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L A S+NN+IGVPLTL R+ D + + ELG +H GEI +LT L + Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT P HL F +E +A AK EIFEGL GT +N DD F E + +H+ Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I SFG ++ AD + SE + + + + Sbjct: 233 --RIISFGINQPADVMAKNITLNSEGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + AIKA R +ID+SYNANP S+ AAI+VL+ Sbjct: 291 AYAQQLSTDAIKAG--LESVVSVKGRLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLA-- 346 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G + VLGDM E+G+ ++ FH ++ + + ++ G +A + Sbjct: 347 --KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAF--GKN 402 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + L +++ L VV+VK S S + + LLEE Sbjct: 403 ARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446 >gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] Length = 448 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 225/469 (47%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LW ++ +A+ G V+ S++S++I+ F +KG +DGHDF+ A Sbjct: 1 MN-LW-LSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 +Q GA + + + I ++ +P V D L AL LA R + K T+I +TGSVGK Sbjct: 59 LQNGAISFISHKE----IENVRVPYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE + LS KT+ G+ NNHIG+P ++ MP D +FE+GMS+ GEI L+ Sbjct: 115 TSTKEYIFNVLSCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLS 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P+I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 175 QIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G ++F+ + ++ + +H N L Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIKSFNFHDIYNSLFA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I +IL D +A+ + R + +G T++D++YNA+ SM +AI Sbjct: 287 IAIGTILGIDRQLVKEAIRQKERLKRRF----EVIKKGSITIVDDTYNASTHSMLSAIDS 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + +G++I VLGDM E+GE S+ H + + I V +G + D Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAK 398 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + Y + D ++ + ++ K+S +++ L+E Sbjct: 399 KKEGSRAYFVSKDECLDVLKREVTTNSTILFKASRGIKLDEIVDEFLKE 447 >gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 462 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 116/464 (25%), Positives = 207/464 (44%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A+ G + + N +S D+R I + F A+KG +++G++F+ A++KGA Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65 Query: 67 LVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 L +V+ + V++ AL LA R + ++AITGS GKT+TK++ Sbjct: 66 LCIVSEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L+ K + G++NN IG+PL + ++ D + E+GM+H EI + +P Sbjct: 126 VGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +H+ N E I AK EI + K + +N DD ++ + Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y G K DF +E ++ Q + + G H N L + Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + R + FT+I++ YNA+P SMKAAI V+ I Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 IA+LG M E+G H +++E I ++ G A ++ Sbjct: 357 KGKR---TIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + +I++ + DGD++++K+S + ++ L Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457 >gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] Length = 452 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + ++G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLAEILRGELKG--ADLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V+ + ++P V D A +LA R + A ++A+TGS GKT Sbjct: 58 QESGAGALLVSRPL-----DTNLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRKVWR--FSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGATHEAIKAGLKDLQAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + I V +G A+ DA Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHVQVGVAAKAAGIDRVLSTGKLSQAISDA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L +++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKSALAAHLKALIAEHQVMTILVKGSRSAAMEEVVRALQE 448 >gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] Length = 481 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 222/472 (47%), Positives = 303/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++A++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +F ++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFDENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] Length = 475 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 130/479 (27%), Positives = 212/479 (44%), Gaps = 19/479 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P ++ +LL+A+ G + + G+S D+R + + +KG ++DGHDF+ AV Sbjct: 6 TPQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAV 65 Query: 62 QKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +KGAG V+V+ S + VDD L AL LA R +IAITGS Sbjct: 66 KKGAGGVLVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPVIAITGS 125 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTTKEM L G+ NN IG+PLTL RM D + ELG + GEI+ Sbjct: 126 SGKTTTKEMTAAILEQTFSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGTNARGEIK 185 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + P I ++T I PAHL +E I K +++ + K+G N DD L+ Sbjct: 186 RLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADDEAMAPLR 245 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + ++G + AD + E + +S V G H N Sbjct: 246 RSWQG----KMLTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMHNIYN 301 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + ++ + L FHP R + + L+D++YNANPAS++ Sbjct: 302 ALAAAALSRAAGIGINEISQGLRNFHPVAARFEVHFLPNGAF---LVDDTYNANPASVRE 358 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ + + + + VL DM E+G+ ++ H + + ++ ++L G + Sbjct: 359 ALKTIQTLKGNHRS--VVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSLSRSTA 416 Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + E + + + S + GD ++VK S ++ +L+ PA Sbjct: 417 AGAIKGGMTEERILFFEDPEEILDDVLSFVEAGDWILVKGSRLMKMEEIVKKILDRTPA 475 >gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis bv. 3 str. 686] gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] Length = 481 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 222/472 (47%), Positives = 303/472 (64%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++ ++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor owensensis OL] gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor owensensis OL] Length = 448 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 128/469 (27%), Positives = 218/469 (46%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LW ++ +A+ G V+ S++S++++ F +KG +DGHDF+ A Sbjct: 1 MN-LW-LSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 +Q GA + + ++ +P V D L AL LA R + K T+I +TGSVGK Sbjct: 59 LQNGAISFISQKE----FKNVRVPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE + L+ KT+ G++NNHIG+P ++ MP D +FE+GMS+ GEI L+ Sbjct: 115 TSTKEYIFNVLNYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKLS 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I VIT I AH+ N I AK+EI +G+ G + +N D+ L K + Sbjct: 175 QIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMADDGMLIINNDNDILNLHKGEL 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I + G + F+ + ++ + + +H N L Sbjct: 235 KK----RIITIGIENESHFRAKNVQRHQNGFS----FEVDNYTYFIESFNFHDIYNSLFA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + IL D +A+ + R + + T+ID++YNA+ SM +AI Sbjct: 287 IAVGIILGIDRQLIKEAIRRKERLKRRFEIIQKGS----ITVIDDTYNASTHSMLSAIDS 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + +G++I VLGDM E+GE S+ H + + I V +G + D Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAK 398 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + Y + D ++ + ++ K+S +++ L+E Sbjct: 399 KKEGSRAYFVSKDECLDVLEREVTSNSTILFKASRGIKLDEIVDEFLKE 447 >gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] Length = 455 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ +I ++ ++ DSR + F +KG DGHDFI A+ GA Sbjct: 5 LAEIAKALD-TTIEGNSDPVISSVAFDSRKLNENSLFVPLKGER-DGHDFINSAIANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + G + P+ VDD L A+ +LA + ++ ITGS GKTTTK+M+ Sbjct: 63 ATLWEKGHPNKPG--NFPLIEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LV+P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ K + Sbjct: 181 CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKITQVKS-- 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG S ++K + + IG H N + + + Sbjct: 239 --TFGFSDQDTIHALEFKSYMHHAS--FVTNSSEQKFSIPMIGKHNVSNAMAAICVGHHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D +LS F P R + + + + ++D+ YN+NP + KA ++ Q+ Sbjct: 295 GESDDEIAASLSDFTPTANRMQWRKGDVGED---IMDDIYNSNPTAAKAVLTSFGQVEVP 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G S H LA+ L I+ V+L G + L++A+ P + Sbjct: 352 EGGRRIAVLGDMLELGAASAELHASLADKLDPLVINEVYLYGPEMKNLEEAIKGKYVPDT 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K+S+ +++ LL Sbjct: 412 LHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455 >gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 484 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 213/483 (44%), Gaps = 24/483 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ + + +++QA+ G +I V VNG+S+DSR++ FFAIKG HYDG FI A Sbjct: 3 MDAI-SLEEVIQAVNGKAISNVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQA 61 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA VVV+ I +P+ VDDV AL LA R + A II ITGS GKT Sbjct: 62 FDAGAIGVVVSKQGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS S+NN IGVPLT+ + +GI E+G + GEI L+ Sbjct: 122 TTKEMLYHLLSHFAPVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPGEILRLSE 181 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IAVI I+ HL IE +A K +I + L++ G N D+ + K Sbjct: 182 IGLPDIAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNPLCCEIADKFG 241 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I SFG +NA + K+ S + G+ + + L Sbjct: 242 GNKI----SFGLGQNAQIRGTDAKKKGNGSV--FTIDIDYNTFRLCGVKGGGRRQFEIQL 295 Query: 301 GIVSILTADVDTAIKALSVFHPK-----------EGRGKRYRCALNQGFFTLIDESYNAN 349 + A A+ + G T I+++YNAN Sbjct: 296 QVPGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQQIGNVTFINDAYNAN 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P S+ AA+ +I GR+I + GDM E+G+ S + H +L E S N+ +W G Sbjct: 356 PESVFAALKYFEEIDA--AGRKIFICGDMLELGKESHALHKELGEKASTLNLDLLWTVGK 413 Query: 410 HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + A V ++D + + + DV+++K S +I+ Sbjct: 414 YASDIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIKGSRGMHMETIIDKYR 473 Query: 466 EEF 468 E F Sbjct: 474 EYF 476 >gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] Length = 457 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 222/468 (47%), Gaps = 20/468 (4%) Query: 4 LWTFH--DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T ++++A+ G I + ++ DSR + + F + G +DGHD+I+ + Sbjct: 1 METLKCKEIVKAVNGVLISGDLNTEFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSF 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++G + D G + V V+D L AL L+ R + + ITGSVGKT+ Sbjct: 61 EQGVSGCLTQKDTAGYEGKV---VIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTS 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M++ L+ G++NN IGVPLT+ + + + E+GMS GEI LT + Sbjct: 118 TKDMVSSVLNKKFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTSI 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+P IA+IT I +H+ + I AK EIFEGL+ G + LN DD+ LK Sbjct: 178 VKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLK----N 233 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L +G D+Q E + E+ + ++ +V G H N L + Sbjct: 234 LLNYRTVFYGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAI 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L V I+ + F P GK ++ +I+++YNA+P SM+AAI+VL Sbjct: 294 AAGIELNIPVKDIIEGIGEFSP----GKMRLNIMDHNGIKIINDAYNASPQSMEAAINVL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418 I+ G+ R IAVLGDM E+G+++ H+ + + +S++ G + + + Sbjct: 350 KDIA--GDNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAVGENGKNIAEGALK 407 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + F+ GDV+VVK S ++NLL Sbjct: 408 AGAEEARVFHFKDNSEAGKFLLDFTKPGDVLVVKGSRGMKMEEIVNLL 455 >gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 455 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 213/472 (45%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ A G +G V I DSR F AI G H DGH FI Sbjct: 1 MKNL-TLENIAGACGGAYVGSDADRSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +GA V+ + G P V+ L AL +A R + ++ ITGSVG Sbjct: 60 QVYAQGALCVLCEKAPAEAQG----PYILVESTLKALMAIAEFYRQQLDIKVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM+ LS + G++NN +G+PLT+ ++ + + + E+G++H GE+ L Sbjct: 116 KTSTKEMIASVLSEKYRVLKTPGNFNNELGLPLTVFQLTEEDEVAVLEMGINHFGEMHRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + RP + VIT I HL + + AK+EIF+ + G I LN DD LK Sbjct: 176 SKIARPDVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKE- 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T FG + + + + +S V GYHM N L Sbjct: 235 ---VRGITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTESFAVTIPIPGYHMVLNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L ++ + + GR + T++D+ YNANP SMKA++ Sbjct: 292 AATAVGRALGMSLEEIRRGIEKLQALGGRFRILEAGG----ITVVDDCYNANPMSMKASL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ GR+IAVLGDM E+GE Q H ++ + +I + G + + Sbjct: 348 GVLADAP----GRKIAVLGDMGELGENEQQLHGEVGRFAAGLDIPVFFCVGALCRYMAEE 403 Query: 418 ---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L V +++++ + + S+ GD V+VK+S++ F +++ L + Sbjct: 404 IRRLSPEKQVITADSVEEVLRLLPDSVQKGDTVLVKASHAMHFEKIVEALTK 455 >gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] Length = 1015 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 191/468 (40%), Positives = 278/468 (59%), Gaps = 2/468 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A +G + + G+SID+RS+ P +A+FAI+G +DGH F+ A Sbjct: 542 PLWTLDAMGEATKGWLPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHA 601 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + VV D V + + VDDVL AL +L +AAR R+ A ++AITGSVGKTTT Sbjct: 602 AGATVSVVAKDWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTT 661 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L++ +A + S+NNH GVPLTLARMP D DF + E+GM+H GEI L + Sbjct: 662 KEMLRTGLAACGHVHAAVASFNNHWGVPLTLARMPADSDFAVIEIGMNHPGEITPLVQMT 721 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+I +A HL F ++EIA AK+EIF+GL GT LN DD ++ ++ Sbjct: 722 RPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNADDERLPIMLDRATEA 781 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + FG++ +AD +L K S + + G+ + + G H+AQN L+ L + Sbjct: 782 EVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNALVVLAV 841 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ AL+ +GRG++++ ++ QG LIDESYNANP SM A++ +L Sbjct: 842 AKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASLDLLGS 901 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--R 420 P GRRIAVLGDM E+G S H D+A+ +S IS V+L+G + AL+D L + Sbjct: 902 REPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRALRDTLMNTK 961 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +HV + +T D + + + GDVV+VK+S F ++IN LLE + Sbjct: 962 GVHVTWCDTADEIGAILADEIRSGDVVMVKASLGMAFAKVINHLLERY 1009 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 93/477 (19%), Positives = 161/477 (33%), Gaps = 49/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +DLL G + +++DSR + P F A+ G DG F+ A Sbjct: 1 MRLNDLL---GGGLPEASRDDVGALDITNVTVDSRKVKPGGLFIAVSGSAQDGAKFVPMA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA V+ + D A IG +S+PV ++ AL +A R I A+TG+ GKT Sbjct: 58 VENGAVAVLADRD--ADIGKISVPVLRNGNIRKALANIASRFHPRQPEIIAAVTGTAGKT 115 Query: 121 TTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLARMPVDVDFGI-----F 165 + L +A S + P + + + Sbjct: 116 SVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDELAGEGVTHC 175 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + S G + VR +A T + HL + IEE +AK +F L K G + Sbjct: 176 AMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDLLKPGQPAV 235 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 Y D F + + G+ +++ +Q EV G++ V Sbjct: 236 IYADDEFSGRVIDHAEFHGLDVKTVGREGEF-IAVKRIEQHRTSQVAEVVCDGETYRVEL 294 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N L+ G+ + A AL+ GR + +D + Sbjct: 295 PLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAAC-YVDYA 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + +VL+ + P+ G+ + V G G + ++ V Sbjct: 354 HKPEALE-----NVLAALRPYTTGQLVLVFG----CGGDRDPGKRAIMGEIAARMADRVI 404 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + A+ +A P + + + L GD ++V K Sbjct: 405 VTDDNPRSENPGSIRAAIMEAAPDATEI---GDRYEAIINAVEGLGSGDTLIVAGKG 458 >gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] Length = 459 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 13/461 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++L+A+ G + + G++ D+R+I+P E F A++G +DGH F+ A G Sbjct: 4 FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACING 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V+++ ++ V V + AL LA R++ ++A+TGS GKTTTK Sbjct: 64 ASMVIISERSSFKAVPRTVSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKN 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ ++S A ++NN IG+ LTL M + + + E+GM LG+I L + P Sbjct: 124 MIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQIAELCRIAAP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I V+T + +H+ E IA AK E+ E L G LN DD + + Sbjct: 184 TIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPYVIRMGDTF----S 239 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I +G + N + + + + ++ +V + +G H N L Sbjct: 240 GNIIGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L DV+ KALS F P R T+ID+SYNANP SM+ A + Sbjct: 300 VLGIDVNRIQKALSEFLPGAQRQFFTEING----VTVIDDSYNANPLSMEMAFHA---MR 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 VLGDM E+GE + FH +L ++ + + G + + Sbjct: 353 QVNGKHYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMITVGKLSRHIAMGARDAGKT 412 Query: 425 HY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + T + + +Q + GDVV+VK S ++ L Sbjct: 413 NIMECTTCEDAWQRLQKMIQSGDVVLVKGSRYMHMETILEL 453 >gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 452 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + + L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 448 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LW ++ +AI G V SI+S++I F +KG +DGHDFI A Sbjct: 1 MN-LW-LSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 +Q GA + D L +P V+D L AL LA R + ++ +TGSVGK Sbjct: 59 LQNGAISFISQKD----FDDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE + LS K + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ Sbjct: 115 TSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 175 QIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G ++F+ + ++ + +H N L Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIESFNFHDIYNSLFA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +IL D + +A+ + R + +G T++D++YNA+ SM +AI Sbjct: 287 IAVGTILGVDRELIKEAIRQKERLKRRF----EVIKKGSITIVDDTYNASTHSMLSAIDS 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + +G++I VLGDM E+GE S+ H + + I V +G + D + Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEVK 398 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + Y T D ++ + ++ K+S +++ L+E Sbjct: 399 KKDGTKAYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447 >gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] Length = 459 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 142/470 (30%), Positives = 235/470 (50%), Gaps = 15/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T D+L+A G I + V+ IS D+R+I E F A+KG +DGHDF+ A Sbjct: 1 MKLDLTVEDILEATNGVLIKGDIREKVDSISTDTRNINEDEVFIALKGEKFDGHDFVKDA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KG ++++ ++ +I V V D L AL +A R + K +I +TGS GKT Sbjct: 61 ILKGVKGIIISREIAVE---GNIFVIRVQDTLKALQDIANYYRRKLKTKVIGVTGSSGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK ++ LS + KTY ++NN IGVPL++ DVDF + E+ M + GEI L+ Sbjct: 118 TTKNLIGKLLSIVGKTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEISLLSK 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P I VIT I AH+ E I AKAEIFE +++ G LN DD F + K Sbjct: 178 IAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRIYEKLK 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMT 299 Y+FG + +D + ++ E +++ K +++ ++ +N+L++ Sbjct: 238 IKK----YTFGFDERSDLRGEIVEKNEENYLLKINFPDGKDIKLSLPIYPLNIYRNLLLS 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ +++ + +++ F + R R +ID++YNANP SM+ AI Sbjct: 294 LLVLWVISPESVYSLEKDFYFDLPKQRLNLKRKENG---LVIIDDTYNANPDSMRTAIEY 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GR+I +LGDM E+G+ S H ++ E + NI G + D Sbjct: 351 LDLLKSS--GRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIFYGPEMRKALDTYQ 408 Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++S+ + + +++SL GD ++VK S + + L +E Sbjct: 409 NLDKKRIYWSKDPEEIKSILKNSLCAGDTILVKGSRAMYMENFVKFLEDE 458 >gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 452 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 213/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI L ++ Sbjct: 298 LGLTYNTIYQNLKK---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + + L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] Length = 452 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLIYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + + L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 452 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus 132] gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] Length = 452 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLIYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + + L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] Length = 452 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S PV V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D ++VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRILVKGSRGMKLEEVVNALI 451 >gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] Length = 452 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 212/472 (44%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ T + L Q QG + + +S DSR I F A+KG +D H+F Sbjct: 1 MIPI-TLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V+ GA ++V+ + ++ P V+D A+ ++A R +SKA ++ +TGS GK Sbjct: 60 VVEAGATALLVDHQL-----DVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ KEM L T G+ NN IGVPLTL R+ + F + E+G +H EI + T Sbjct: 115 TSVKEMTASILGQRGNTLYTAGNLNNDIGVPLTLFRLTDEYQFAVIEMGANHPHEIEYTT 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++V+P A++ + AHL+ F E +A AK EI++GL + GT + + K Sbjct: 175 NIVKPETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTAIV-----NLDSYSDKW 229 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +T++ + ++ ADF + + + +E+ G H N+L Sbjct: 230 QFGSRQTVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEITLPLPGVHNIANVLAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A ++ + ++ GR R + ++D++YNAN SM AAI+V Sbjct: 290 SALAISVGATLEDIKQGIATTKAVPGRLFPVRLSDT---KVVLDDTYNANDGSMIAAINV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+++ G RI V GDM E+G+ + H + + V G + Sbjct: 347 LAKMP----GYRILVAGDMGELGDYAHECHERVGLAAKQAGLDKVLSVGQLSEIISQ--- 399 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEFP 469 S + L + DVV +VK S S ++N L E F Sbjct: 400 SSERGEHFTVKQDLLTRLIPLAQQNDVVSILVKGSRSSAMEDVVNALKECFE 451 >gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] Length = 452 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 213/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCKIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + + L G R + T+I+++YNA+P SM+AAI L+ ++ Sbjct: 298 LGLTYNRIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLNTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 454 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 212/464 (45%), Gaps = 13/464 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A+ G I G N IS D+R I F A+KG +++G+ + + A++KG Sbjct: 3 LNIQEVIEAVNGEIIVKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKG 62 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +V+V+ V V D AL LA R + ++ ITGS GKT+TK Sbjct: 63 ASVVIVDEIKFEKEDLKSKGTVIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS K + G++NN IG+PL + + D D + E+G S+ GEI L + Sbjct: 123 DLIAAFLSGKYKVFKTQGNFNNEIGLPLMIFELNKDYDVAVLEMGTSNFGEINTLAGIAL 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA IT + AH+ E I K I + + + +N ++ + +K + H Sbjct: 183 PDIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDDSCLVINCENDMLKTVKDEDH--K 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I G K+ + + + SE + + + + + +G H N L+ + I Sbjct: 241 NINIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNALLGIQIS 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + K L F R + + FT+I++SYNANP SM + ++ + Sbjct: 301 KDLGLKFEEMEKGLDNFKATSMRLEFIK----HNKFTIINDSYNANPDSM---KAAINVL 353 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + R+IAVLG M E+G+ + H ++ E + +G + + K+ + Sbjct: 354 KSYTGDRKIAVLGTMGELGDYANIAHKEVGEFA-KGKADILLTTGEYKDSYKEGF--GTN 410 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +T D L + S + D D ++VK+S S F +I + + Sbjct: 411 TLVFDTKDDLIKSLNSMIKDEDTILVKASRSAKFEEIIKEIQNK 454 >gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 481 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 221/472 (46%), Positives = 302/472 (63%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++ ++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VCPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ GDVV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] Length = 482 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 196/470 (41%), Gaps = 14/470 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + D + G + P + ++ DSRS+ P + F A+ G +D HDF+ V + Sbjct: 8 MMSAADAAVWMAGAHLAG-PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ A + + V V D AL +LA R + ++A+TGS GKTT K Sbjct: 67 GAAAVLVSRPPAAMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM++ + A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLAT 186 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A+I H +E +A+ A + L G D + Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++ ++VQ G +G H A+N L Sbjct: 247 AAAGTRRV-LDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAAT 305 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +ALS F P +GR + ++D++YNANP S++AAI L Sbjct: 306 ACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVVDDTYNANPDSVRAAIDAL 362 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + R VLGDM E+G +FH ++ I V +G + DA Sbjct: 363 ATLPA----PRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGG 418 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 419 GAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] Length = 482 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 196/470 (41%), Gaps = 14/470 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + D + G + P V ++ DSRS+ P + F A+ G +D HDF+ V + Sbjct: 8 MMSAADAAVWMAGAHLAG-PDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ A + + V V D AL +LA R + ++A+TGS GKTT K Sbjct: 67 GAAAVLVSRPPAAMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM++ + A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLAT 186 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A+I H +E +A+ A + L G D + Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++ ++VQ G +G H A+N L Sbjct: 247 AAAGTRRV-LDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAAT 305 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +ALS F P +GR + ++D++YNANP S++AAI L Sbjct: 306 ACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVVDDTYNANPDSVRAAIDAL 362 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + R VLGDM E+G +FH ++ I V +G + DA Sbjct: 363 ATLPA----PRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGG 418 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 419 GAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] Length = 452 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + + L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTNDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] Length = 448 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 220/469 (46%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LW ++ +AI G V SI+S++I F +KG +DGHDF+ A Sbjct: 1 MN-LW-LSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 +Q GA + D + +P V D L AL LA AR + ++ +TGSVGK Sbjct: 59 LQNGAISFISQKD----FEDIKVPYIKVQDSLLALQSLACYARRKLNDLKVVGVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE + LS K + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ Sbjct: 115 TSTKEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKLS 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I +IT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 175 QIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDILNLHKKEL 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G ++F+ + ++ + +H N L Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIESFNFHDIYNSLFA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +IL D +A+ + R + +G T++D++YNA+ SM +AI Sbjct: 287 IAVGTILEVDRQLVKEAIRQKERLKRRF----EVIKKGSITVVDDTYNASTHSMLSAIDS 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + EG++I VLGDM E+GE S+ H + + I V +G + + D Sbjct: 343 ICEF----EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAIYIFDEAK 398 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + Y + D ++ + ++ K+S +++ L+E Sbjct: 399 KKEGSRAYFVSKDECLDVLKREVTSNSTILFKASRGVKLDEVVDEFLKE 447 >gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH9] gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Staphylococcus aureus 04-02981] gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 452 Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI L ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O46] Length = 452 Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 452 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] Length = 452 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 138/461 (29%), Positives = 217/461 (47%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSRSI+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQKGTSID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ LLK + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVNEVENA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + ++ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHISVGNYLEEKHIDVLYTFGNEAKYIYESGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] Length = 452 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI L ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor bescii DSM 6725] gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor bescii DSM 6725] Length = 448 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 223/469 (47%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LW ++ +A+ G V SI+S+SI F ++G +DGHDF+ A Sbjct: 1 MN-LW-LSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 +Q GA + D L +P V D L AL LA AR + ++ +TGSVGK Sbjct: 59 LQNGAISFISQKD----FDDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE + LS + + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ Sbjct: 115 TSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 175 QITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEF 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G ++F+ + ++ + + +H N L Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQKHQNGFS----FEVDNYTYFIKSFNFHDIYNSLFA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +IL D + +A+ + R +N+G T++D++YNA+ SM +AI Sbjct: 287 IAVGTILEIDRELIKEAIRQKERLKRRF----EVINKGSITVVDDTYNASTHSMLSAIDS 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + +G++I VLGDM E+GE S+ H + + I V +G + D Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFYIFDEAK 398 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + V Y + D ++ + ++ K+S +++ L+E Sbjct: 399 KKDGVKAYFVSKDECLDVLKREVTSNCTILFKASRGIKLDEVVDEFLKE 447 >gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] Length = 451 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 129/461 (27%), Positives = 207/461 (44%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR I F KG + DGH F+ A++ GA Sbjct: 5 TLEQIKHWIPCEIDEQYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + P+ V+D L AL LA A +IA+TGS GKTTTK+M Sbjct: 65 GASFSEK-GTELSEDIEGPIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ K G+YNN IG+PLT+ + D + I E+GMS EI L+ + +P Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL++ GT + D+ + + L Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFIYDGDEPLLKPHLEQ---LNKA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + +E + + +G H +N + + I Sbjct: 241 RLISVGLGNSNTLVCHVDDIETEGIAFTINDK---ESFTLPILGTHNMKNATIAIAIGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T ++ + G R T+I+++YNA+P SMKAAI LS + Sbjct: 298 LGLSYETIKDNINH---VKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTLSSM-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424 EGR+I +L D+ E+GE SQS H ++ L+ I ++ G + + + Sbjct: 353 --EGRKILILADVLELGENSQSMHEEVGAYLNNKAIDVLYTYGDEARFIFNIGQNEVPTA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + L ++ + + D ++VK S ++ L+ Sbjct: 411 QHFDDKSELIKELKIIVKENDKILVKGSRGMKLEEVVEALI 451 >gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] Length = 454 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 137/472 (29%), Positives = 209/472 (44%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T L Q QG ++ +S DSR IA F A+KG +D HDF Sbjct: 1 MISL-TLAQLAQITQGQIESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V GA ++V + ++ P V D A+ +LA R +S+A I+ +TGS GK Sbjct: 60 VVVTGAKALLVERKL-----NVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ KEM LS KT G+ NN IGVPLTL R+ D +F + E+G +H EI + T Sbjct: 115 TSVKEMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTT 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++V+P A++ + AHL+ F E +A+AK EI++G+ + GT +N D K + Sbjct: 175 NIVKPEAALVNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGTAIVNLDSYSE---KWQF 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 YS ADF + + + S+++ G H N+L Sbjct: 232 QPRQTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPVGSVDITLPLPGRHNIANVLAA 291 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A ++ ++ GR R + ++D++YNAN SM AAI V Sbjct: 292 SALAISVGASLEDIKNGIAKTQAVPGRLYPVRLS---EHKVVLDDTYNANDGSMIAAIQV 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L ++ G RI V+GDM E+G+ ++ H + + V+ G + Sbjct: 349 LEKMP----GYRILVVGDMGELGDYAEDCHQRVGVAAKQAGLDKVFSVGQLSELISQFSE 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEFP 469 H L + DVV +VK S S ++N L E F Sbjct: 405 CGEHFTV---KADLLTRLIPLAQQKDVVSILVKGSRSSAMEDVVNALKECFE 453 >gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 446 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + + G +S D+R+I P F A++GP++D +DFI A ++ Sbjct: 1 MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN + ++P+ V D L AL +LA R + I +TGS GKTTT+ Sbjct: 59 GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L A S+NN+IGVPLTL R+ D + + ELG +H GEI +LT L + Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT P HL F +E +A AK EIFEGL GT +N DD F E + +H+ Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I SFG ++ AD + S+ ++ L +E+ IG H N L Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D L P +GR + +ID+SYNANP S+ AAI+VL+ Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G + VLGDM E+G+ ++ FH ++ + + ++ G +A Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAF--GK 401 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + L +++ L VV+VK S S + + LLEE Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446 >gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 459 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 125/461 (27%), Positives = 211/461 (45%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A +G+ I P+ N +SID+R + + AIKG ++DG+DF++ A+ KGA Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +++ L+ V++ AL +LA R + +I +TGS GKT+TK+ Sbjct: 65 ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ ALS K + G++NN IG+PL + + D + E+GMS L EI+ L+ + RP Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT I +H+ N E I AK EI K + +N+DD + + + L Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-- 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S KN D + + + + + G H N L+ + Sbjct: 243 -IKASISDDKNIDLKGESLVLKEDS----CEFKLNESKFYIPMPGKHNISNALLAIACAR 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + K R + T+I+++YNA+P SMKAAI V+ + Sbjct: 298 ELGVEDQLINKGFLNIEATSMRLDIEKNKG----ITIINDTYNASPDSMKAAIEVMKNLK 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 RIAV+G M E+GE S +H ++ ++ + G A + Sbjct: 354 GKR---RIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGEFAKAYSEGFNNKNSS 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +G ++ S + + D+++VK+S S F ++ L Sbjct: 411 IELAEKEGAIAYLTSEIREEDIILVKASRSMKFETIVEALK 451 >gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Mollicutes bacterium D7] gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. D7] Length = 450 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 215/466 (46%), Gaps = 19/466 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ A G I + G S DSR + I G YDGHDFI A G Sbjct: 1 MKVSEIVIATGGKLISGDETMEITGFSQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ + I V VD+ L AL K+A R K ++ ITGSVGKT+T++ Sbjct: 61 ASAIITDR----LIEDDKHVVILVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ + KT G+YNN+IG+PLT+ R+ D + I E+GM+HL E+ L+ + P Sbjct: 117 MVYSVVKQQYKTLKTEGNYNNNIGLPLTILRL-KDEEVMILEMGMNHLNEMEELSRIACP 175 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I+ IT + AH+ E I AK EI G+ T+ +N D+ ++ Sbjct: 176 DISAITNVGTAHIGELGSRENILKAKLEIVAGMSDGSTLVINGDNDMLSTVR-----FDN 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G A F+ K + S + GK +VV G H N L+ + I Sbjct: 231 FKVVKVGVDCAAVFKAEKVILMDDHSEFTINYNGKVYQVVVPVPGNHFVLNALVAIAIGI 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L ++ I+ +S F + R N TLID +YNA+ SMK++I VL+ S Sbjct: 291 NLEIPMEKCIQGISQFELTKKRMDVIELKNN---ITLIDGTYNASEDSMKSSIDVLATYS 347 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSI 422 IAVL DM E+GE S+ H + + ++ I + G + D AL Sbjct: 348 RRK----IAVLADMLELGEFSEQLHRSVGKYVAEKQIDVLVAVGREAKFMSDSAALSGMA 403 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 ++Y + +++++L + DVV++K SN ++ + E+F Sbjct: 404 EIYYCNNNQEVVNYLKNNLQNDDVVLLKGSNGMKLKDVVTKIEEKF 449 >gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] Length = 452 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 133/463 (28%), Positives = 211/463 (45%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L +QG G V+ ++ D+R + F A+KG +D HDF+ A + GA Sbjct: 5 TLSQLADVLQGELHG--SDLAVDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + S+P V D A +LA R + A ++A+TGS GKT+ KEM Sbjct: 63 GALLVSRKLA-----CSLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L KT G+ NN IGVP+TL R+ + +F + ELG +H GEI + L RP Sbjct: 118 TAAILGQCGKTLYTAGNLNNDIGVPMTLLRLTREHEFAVIELGANHQGEIAWTVSLTRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL + G LN D++ + ++ + Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPQDGIAILNADNNDWLNWQSVIGDRQVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +DF + S + ++ S++V+ G H N L + Sbjct: 238 R--FSPNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAMA 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A +D L+ GR L+D+SYNAN SM AA VLS + Sbjct: 296 VGAGLDAVKAGLAKLQAVPGRLF---PISLAQHKLLLDDSYNANVGSMTAAAQVLSDMP- 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ S++ H + E I V+ G + A S Sbjct: 352 ---GYRVLVVGDMAELGDESEACHRQVGEAAKAAGIDRVFSVGRLSQLIGAA---SGVGE 405 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + L +++++ + + ++VK S S ++ L E Sbjct: 406 HFADKAALIARLKTAIEEQQIITILVKGSRSAAMEEVVRALQE 448 >gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Ralstonia solanacearum CFBP2957] gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CFBP2957] Length = 482 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 197/470 (41%), Gaps = 14/470 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + D + G + P + ++ DSRS+ P + F A+ G +D HDF+ V + Sbjct: 8 MMSATDAAAWMAGAHLAG-PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ A++ + V V D AL +LA R + ++A+TGS GKTT K Sbjct: 67 GAAAVLVSRPPAAALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM++ + A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLAT 186 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A+I H +E +A+ A + L G D + Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++ ++V G + +G H A+N L Sbjct: 247 AAAGTRRV-LDFGIEGGAVSATVTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNALAAT 305 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +ALS F P +GR + +ID++YNANP S++AAI L Sbjct: 306 ACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVIDDTYNANPDSVRAAIDAL 362 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + R VLGDM E+G +FH ++ I V +G + DA Sbjct: 363 ATLPA----PRWLVLGDMGEVGAQGPAFHQEIGAYARERGIDAVLATGELARHVVDAFGG 418 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 419 GAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] Length = 452 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 214/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + ++G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLAEILRGELKGG--DLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + +P V D A +LA R + A I+A+TGS GKT Sbjct: 58 KDNGAGALLVSRAL-----DTDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS KT G+ NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSRCGKTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL G +N D++ + + Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQNIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRKVWR--FSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGATPEAVKAGLKDLQAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKTAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L +++ + + + ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALVAHLKALIAEHQIITILVKGSRSAAMEEVVRALQE 448 >gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] Length = 453 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 219/469 (46%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L G G V+ ++ D+R ++ F A++G +D HDF+ A Sbjct: 1 MITL-TLQKLADLTGGKLFGG--DLSVDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ + ++ + + D AL +LA R +S A ++A+TGS GKT Sbjct: 58 MAAGASALLVSKHVTVAVPQVVVA-----DTRIALGQLAGWVRQQSTARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN IGVPLTL R+ + + ELG +H GEI + T Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLNASHQYAVVELGANHQGEIAYTTE 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP A++ +A AHL F + +A AK EIF+GL GT LN D + + + H Sbjct: 173 ITRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPINGTAILNADSNDWPHWQHSLH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + +S ++DF K S + + S+ + G H N L Sbjct: 233 SKTVWR-FSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + K LS GR A N L+D+SYNAN SM AA VL Sbjct: 292 ALALSVDAPLSAIQKGLSHLQAVPGRLYPVALAEN---KLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G+ ++ H ++ E L I V G + +A Sbjct: 349 SEMP----GYRVMVVGDMGELGDEAEECHREVGEAARLAGIDKVLSVGKMSHLISEA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467 S + + + +Q+ L + DV ++VK S S +++ L E+ Sbjct: 402 SGAGEHLQDKAAVTARLQTLLAEHDVITILVKGSRSAAMEQVVQSLQEK 450 >gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB18] gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 479 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 197/467 (42%), Positives = 263/467 (56%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A++ G +P + GISIDSR++ P +A+FAI+G +DGH F+ A+ Sbjct: 5 PLWTASAMAEAMRATPSGALPDA-IFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GAGL VV P+ VDDVL AL L+ A+R R A +IAITGSVGKT+T Sbjct: 64 AGAGLAVVERAQRDKF-PADAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L + +T+A + S+NNH GVPL+LAR P F +FE+GM+H GEI+ L LV Sbjct: 123 KEALRAVFGAQGETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHPGEIQPLVALV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+ P HL F +E IA AKAEIF GLE G + LN D+ F L+ ++ A Sbjct: 183 RPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQFARLRKRAKAH 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI I SFG + AD +L E S + + G+ + G HMA N L L Sbjct: 243 GISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMAINSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ A LS P GRG R+ + G TLIDESYNANPASM AAI+VL Q Sbjct: 303 AELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQ 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +GRRIAVLGDM E+G H L E + I V+ G + L DAL Sbjct: 363 AAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQLWDALSTGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+E L + +++ GDV++VK S ++ L +P Sbjct: 423 RGGYAEDAAALESQVIAAIRGGDVIMVKGSLGSRMKTIVTALERRYP 469 >gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] Length = 454 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 208/471 (44%), Gaps = 22/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ T LLQ G I + + +S DSR I F A+KG +D HDF Sbjct: 1 MIPV-TLSQLLQVTHGRVINEGNQELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V GA ++V+ + ++ P VDD A+ +LA R +SKA ++ +TGS GK Sbjct: 60 VVDAGAAALLVDHQL-----DINCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ KEM L KT G+ NN IGVPLTL R+ D F + E+G +H EI + T Sbjct: 115 TSVKEMTASILVQRGKTLYTAGNLNNDIGVPLTLFRLTHDHQFAVIEMGANHPHEIEYTT 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++V+P ++ + AHL F E +A AK EI++GL GT +N D K + Sbjct: 175 NIVKPEAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGTAIVNLDSYSD---KWQF 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 YS + ++ADF + + + +++ G H N+L Sbjct: 232 KPRQTVWRYSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDITLPLPGMHNIANVLAA 291 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A ++ + L+ GR R N +ID++YNAN SM AAI+V Sbjct: 292 SALSISVGATLEEISQGLASTKAVPGRLYPVRLGDN---KVVIDDTYNANDGSMIAAINV 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + G RI V+GDM E+G + H + + V G + + Sbjct: 349 LATLP----GYRILVVGDMGELGHYAHDCHQRVGIAAKQAGLDKVLSVGQLSEIISQSSE 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEF 468 H L + DVV +VK S S ++N L E F Sbjct: 405 CGEHFTV---KQDLLTRLIPLTQQNDVVSILVKGSRSSAMEDVVNALKECF 452 >gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 476 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 172/476 (36%), Positives = 242/476 (50%), Gaps = 18/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + +A G + G G+SID+R++ + F A+ DGH+F+ A Sbjct: 1 MS-LWTAAEAARATGGEARG---DWTALGVSIDTRTLRAGDLFVALSAAR-DGHEFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ V P+ V DVL L L AAR R I+A+TGSVGKT Sbjct: 56 LEKGAAAALVSR--VPENVPADAPLLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML + ++ +A SYNNH GVPLTLARMP D + GI E+GM+H GEI L Sbjct: 114 STKEMLRTVIGGQRRVHAAEASYNNHWGVPLTLARMPRDTEVGIIEIGMNHPGEIAPLAR 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+ AHL F I+ IA KA IF GL G +N D +L+A + Sbjct: 174 LARPHVAMITTVGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAE 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G + +FG++ +L K + E ++ G H A N L L Sbjct: 234 ATGAHIL-TFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAA 356 +V L D A LS + P GRG R R + F LID+++NANP SM AA Sbjct: 293 AVVRALGLDRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAA 352 Query: 357 ISVLSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + V++ P H GRRIA+LG+M E+G + H LA++ + + V G Sbjct: 353 LEVIAAARPKDNVGRHARGRRIAILGEMLELGPDELALHAGLADLPATAELDVVHCVGKR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + AL +ALP ++E L + GDVV+VK S +++ L + Sbjct: 413 MRALYEALPPGNRGRHTEKASDLAAKAARLVDAGDVVLVKGSKGSKVSEVVDALRK 468 >gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] Length = 460 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 13/467 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++F+++ +A + G +SIDSR+I + F A+KG +DGHDF+++A +KG Sbjct: 4 FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+++ S VF V D A LA R+R ++A+TGS GKTTTK+ Sbjct: 64 ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ LSS + + NN IG+ LTL + + D + E+GM G+I+ L ++ +P Sbjct: 124 MISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIKELCNIAKP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I VIT + +H+ E IA AK E+ + L + G LN DDSF + + Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKG--- 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +G + N K + + ++ +V +G H + L Sbjct: 241 -RVIYYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 IL DV + LS F P + + +ID++YNANP SM+ A+ L QIS Sbjct: 300 ILGVDVTKIQRVLSDFSP----RAGRQSLIEINGIKIIDDAYNANPLSMEMALRSLKQIS 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422 + VL DM E+GE + FH ++ + + G + Sbjct: 356 AKNK---YLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGAKEKGMK 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 ++ +T I + GDV ++K S+S Y + +LL EE Sbjct: 413 MIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459 >gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus aureus subsp. aureus ST398] Length = 451 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 16/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQK-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + +G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNEHYD----LPILGKHNMKNATIAIAVGHE 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 297 LGLTYNIIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 353 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 409 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 410 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 450 >gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] Length = 453 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 131/463 (28%), Positives = 210/463 (45%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L A+ IG ++ ++ D+R I F A+KG +D HDF AV+ G+ Sbjct: 5 SLQTLADALNAELIGT--DTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGS 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D AL +L R + A ++ +TGS GKT+ KEM Sbjct: 63 GALLVSKRL-----PVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + DF + E+G +H GEI + T L RP Sbjct: 118 TAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIEMGANHAGEIAYTTALARPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ ++ AHL F + +A AK EIF+GL + G +N D++ + + K + + Sbjct: 178 TALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVINADNNDWANWQHKLNGKTVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + DF + + S++V G H N L + Sbjct: 238 R-FSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLPVPGRHNIANALAAAALAMS 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A + L+ +GR + TL+D+SYNAN SM AA VL+++ Sbjct: 297 VGASPENVRAGLATLQSVKGRLFPIVISEG---KTLLDDSYNANVGSMTAAAQVLAEMP- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ +GDM E+G S+ H + E + I V+ G + D S Sbjct: 353 ---GYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRIISDV---SGCGE 406 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + E L + S L + V V++K S S +++ L E Sbjct: 407 HLEDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQE 449 >gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] Length = 464 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 127/469 (27%), Positives = 205/469 (43%), Gaps = 17/469 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +A G I + +S D+R+I F + G +DGH FI A++ GA Sbjct: 5 NIQAIARACNGTIIKKGSVDTIGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGA 64 Query: 66 GLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V V + + V D L AL ++V R I +TGSVGKT+TK Sbjct: 65 QAVFVQEGHNTKTIQAFNDVWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTSTK 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++++ LS + +G++NN IG+PLTL + + + E+GMS GEIR L +V Sbjct: 125 DLISGVLSGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGEIRDLVDMVH 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I VIT I +H+ + E I AK EI ++ + +N DD E L+ Sbjct: 185 PEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDD---EYLRCIHKDDK 241 Query: 244 IKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T+ +G S DF + E S V++ G+++ +G H N L + I Sbjct: 242 DYTVIFYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVWI 301 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + L F P + R + +G +I+++YNA+P SMKAA+ VL Sbjct: 302 GLKYHMTFEEIQRGLDGFQPSKMRL----EVITKGRMKIINDAYNASPDSMKAALDVLDH 357 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 + + + IAVLG+M EMG S+ H + + NI + G + + Sbjct: 358 MKSNRK---IAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGEMANWIGLEAKKYG 414 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + + D ++VK S ++N L E Sbjct: 415 IEENSIRHVFNNKEAIEMLGQFVQEEDAILVKGSRGMAMEEIVNFLQER 463 >gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] Length = 458 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 128/461 (27%), Positives = 206/461 (44%), Gaps = 16/461 (3%) Query: 6 TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + G + V+G+S D+R+I + ++G ++GHDF+ AVQKG Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKG 64 Query: 65 AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A V+ + G + V DD L AL +LA R + +I +TGS GKTTTK Sbjct: 65 AAAVLWAEREGTPPEGVPVVVV---DDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ + G+ NNHIGVPLTL + + + E+GMS GEI LT + R Sbjct: 122 DMIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAR 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AVIT I AHL E IA AK EI GL G + D+ K Sbjct: 182 PDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPKLPLPR 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG + D+ + + + ++ + + L + Sbjct: 242 --HVVTFGAGEQNDYYPTDVRIEAGGTSFV----INALPGRTLFMPVLGKHYVYNALAAI 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + R + FT+I+++YNA+P SM+AA+ +L ++ Sbjct: 296 AVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQEL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPR 420 S + + IAVLGDM E+G+ +FH ++ EVL + +V+ G + A Sbjct: 356 SGYRQK--IAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLSHHIAAAAAPFFD 413 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V + L ++S D+V++K+S L+ Sbjct: 414 DGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELL 454 >gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] Length = 464 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 201/472 (42%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L TF ++ +A +G IG + G IDSR + F IKG DGH FI Sbjct: 6 MKNL-TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIP 64 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++GA +V+ ++ G P V+ A+ KLA R ++ ITGSVG Sbjct: 65 TVFEQGAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM++ L + G++NN IG+PLT+ + + E+G+S GE+ L Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P + VIT I HL + + AK E FE + LN DD ++ Sbjct: 181 STMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTV 240 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I + + + + H G H N + Sbjct: 241 NGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAHIHIPGEHNVYNAM 300 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + GR + T+ID+ YNANP SMK++I Sbjct: 301 AAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKTHG----MTVIDDCYNANPVSMKSSI 356 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL H +GR IAVLGDM E+G + H ++ E + +I ++ +G Sbjct: 357 EVL----SHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKEYAAG 412 Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +HY E + + + S + +GD ++VK+S+ F +++ L + Sbjct: 413 AAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSK 464 >gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] Length = 453 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 211/468 (45%), Gaps = 21/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + L + +G ++ +S D+R + F A++G +D HD+ + A Sbjct: 1 MISV-SLRQLADVLGARLVG--ENLTISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V+ + + +P VDD AL +A R +S+A ++A+TGS GKT Sbjct: 58 VNNGAAALLVSKHL-----PIDVPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G++NN IGVPLTL R+ + D+ + ELG +H+GEI + T Sbjct: 113 SVKEMAASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP A++ +A AHL F +E +A AK EIF GL G +N D + + Sbjct: 173 MVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAIINADSNDEARWQDVLT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G DF + + + + V G+H N L Sbjct: 233 GKTLWRFSPQG-HDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A ++ L GR L+D+SYNAN SM AA VL Sbjct: 292 ALALTVGASLEAVKVGLEQLQAVPGRLF---PIALAPGKLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G+ +Q+ H + E NI V G + + +A Sbjct: 349 AEMP----GYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVLSVGTLSVLIGEA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSL-VDGDV-VVVKSSNSCGFYRLINLLLE 466 S + + L +++ + + V++K S S ++++ L E Sbjct: 402 SGTGEHFDNKAALIERLRALVTQHNTITVLIKGSRSAAMEQVVHALQE 449 >gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] Length = 463 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 171/466 (36%), Positives = 250/466 (53%), Gaps = 11/466 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A VNGISID+R+I P + F A+K DGHDF+ A Sbjct: 1 MS-LWTAQE---AAAATGGRATSDWQVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V+ + + P+ V+DV AL L A R R+KA ++A+TGSVGKT Sbjct: 56 LEKGAGAALVSH--IPEGVAEDAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L+ +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L+ Sbjct: 114 STKEMLAAMLTPQGRTHAAVASYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEIAPLSR 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPH+A++TT+A HL F + IA KA I EGLE G LN D +L+ + Sbjct: 174 QARPHVALVTTVAAVHLEAFEDVAGIAREKAAIIEGLEPGGIAVLNADLEETPVLRDVAQ 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ T + + D+ L++ + + + + + +G H A N L Sbjct: 234 DAGVATRWF--GQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L AD++ A+ L + P +GRG R+ L G T++D++YNANP S+ AA++VL Sbjct: 292 AAIEALGADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + EGRRIA L DM E+G H LA+ +L I V G + L ALP Sbjct: 352 AATP--TEGRRIAYLADMKELGPEEARLHAGLADHPALAKIDAVHCIGPLMKHLYAALPE 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ET + + + GDVV+ K S S R+++ + E Sbjct: 410 NKRGTWVETSAEAASALPAQIQGGDVVLAKGSLSMAVARVVDAIRE 455 >gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] Length = 467 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 205/463 (44%), Gaps = 17/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + QA++G VN + ID+R + F AI+G +DGHDFI A + G Sbjct: 22 LTLIQVAQAVRGEL-RNPADLTVNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESG 80 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V + ++ P V D AL LA R ++ +TGSVGKTTTKE Sbjct: 81 AAAAVSDREI-----ETDRPYILVKDTREALLDLARCYRRAFDGLVVGVTGSVGKTTTKE 135 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ LS+ KT G+ NN IG+P T+ + + + E+GMS LGEI LT P Sbjct: 136 MIAAVLSAGYKTLKTQGNLNNAIGLPRTIFELDSTYEAAVIEMGMSALGEISLLTRTALP 195 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I VIT I +HL E I AK EI EG+ + +N D+ + ++ L Sbjct: 196 DIGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLVINGDNDLLQTVQLDRPVLTC 255 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +AD++ + + ++ ++ V+ IG H N L + Sbjct: 256 GI-----DNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLPAIGEHNVLNALFGFAVGR 310 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + AL + P + LI++ YNA+P SM+AA++ L Q+S Sbjct: 311 FAGMEDAAIATALGTYTPSG----MRQNTRTVNGVMLIEDCYNASPDSMRAALTTLQQLS 366 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 GR+IAVLGDM E+G +SQ H + E+ + ++ G HV Sbjct: 367 --CAGRKIAVLGDMLELGPVSQQAHAEAGELAQKCGVDALFCFGALSRETAKHGEGIPHV 424 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + L + + GD V+ K+S +I+ + ++ Sbjct: 425 EWFDDKQSLAQSLSGFVQPGDAVIFKASRGMKLEEVIHAVFDK 467 >gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Filifactor alocis ATCC 35896] Length = 452 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 228/469 (48%), Gaps = 23/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN L F +++ +G +G + I+ DSR + + F AIKG H+DG+ F+ Sbjct: 1 MNILK-FSQIVEWTEGVVLGDSMFSESIYSITTDSRKVKQGDLFIAIKGEHFDGNHFVDM 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA V+ + I S V V D + AL KLA R +I+ITGS GK Sbjct: 60 ALDNGAVAVLSS------ISHKSPRVITVPDTVKALGKLASGYRDMLDIPVISITGSSGK 113 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ AL+S Y G++NN IG+PLT+ + D I E+GMS LGEI +L Sbjct: 114 TTTKDMIFYALNSQCNAYRTEGNFNNEIGMPLTILNSDEEHDVMILEMGMSSLGEIEYLC 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P+I VIT I AHL E+I AK EI + + + +N +D F L Sbjct: 174 SIAKPNIGVITNIGTAHLEQLGSQEKIFEAKMEITSFMHEKDILLVNGEDKFLRNLDKDV 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + I +FG S + D+ + + + + + + G + +G H N L Sbjct: 234 YQP---MIKTFGFSNSCDYFCKNYDYREDSTDICAMIDGLEVNYTIPSLGKHNILNSLAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG+ S+L D+ A K+L F P + R + T+I++SYNANP S+ SV Sbjct: 291 LGVASVLQMDLQKAAKSLIDFQPSKLRM----QIEKKDGITIINDSYNANPDSV---KSV 343 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 LS ++ RRIA+LGDM E+G S +H + E + ++ + G +++ Sbjct: 344 LSILAEKNNVRRIAILGDMLELGRDSDKYHRQIGE-CAAHSCDILIGIGMFSDYMREGAL 402 Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + T + I+ + GDVV++K S +LI+L+ Sbjct: 403 EHGMDEGFCYSFRTQEESVTTIKDIMRVGDVVLLKGSRGMAMEKLIDLI 451 >gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] Length = 472 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 199/465 (42%), Gaps = 11/465 (2%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + G + G+ DSR+I P F I G +DGH+F + G Sbjct: 5 SLKSIADLCGGTLSRNQDANIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG D +P+ V+D L AL LA A + A ++ ITGS GKTT K+ Sbjct: 65 AGAAFWQRDHQPVP---DLPLILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ L + K + G+YNNHIG+PLT+ M D D + E+GMS EI L+ + RP Sbjct: 122 MVSALLETTYKVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT I AH+ EEIA AK EI G++ G + + D+ + + A+ + Sbjct: 182 DMTVITNIGEAHMLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKP 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + +F + + E + + V+ Sbjct: 242 EGLNTFTFGNQETNDDYPTGLMFHARGIIFTSNRHAGEGFSLPLLGRHNVVNALAAMAVA 301 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D AI S F + R T+++++YN++P ++KAA+ VL + Sbjct: 302 AHLGIGDEAI--RSGFANLKLSSMRIEAVETPFGVTVLNDAYNSSPTAVKAAVDVLGDMK 359 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + + IAVLGDM E+G+ FH ++ + LS N V+ G + + Sbjct: 360 GYRKR--IAVLGDMLELGQREGEFHAEIGDYLSPDNADLVFTYGPLSVHTAERAKLRFPD 417 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + L + + + D+V+VK+S +++ L Sbjct: 418 GAVLSFTDKEKLIASVLEHVSEKDIVLVKASRGMRLEHVVDALKA 462 >gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter propionicus DSM 2379] gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 469 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 186/466 (39%), Gaps = 17/466 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +++ ++ A G V+G+S DSR++A + F ++G +DGHDFI K Sbjct: 1 MFSIAEIAAATAGG-FQGDRSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G V+ + I + V V D L AL LA A R R ++ ITGS GKTTTK Sbjct: 60 GVAAVLADQSFDGEIPP-GLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L G+ NN IG+P L R+ + + E+GMS GEI L + Sbjct: 119 EMLATILEQTGPGLKTAGNLNNLIGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAA 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P ++ PAHL + +E +A AK E+ L G +N DD L A + Sbjct: 179 PQTGIVLNACPAHLESMGSVEGVARAKGELLLRLPAGGCAIINADDP----LIAGQPSPP 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +FG + L + VV G H N L Sbjct: 235 GVRRLTFGLGDADVRATEITSLGIGGQSFLLHLGEIVLPVVLWSYGRHAVYNALAAAAAA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + L F P + + G LID+SYNANPASM+AA++ L ++ Sbjct: 295 HGLGIAAELIQSGLERFRP----YDKRFQLEDVGGLVLIDDSYNANPASMEAALTTLGEL 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G GR LGDM EMG H L + ++L G + + Sbjct: 351 --KGGGRAFVALGDMLEMGSNEAELHRALGVRAAAV-ADRLYLCGPLMAHAAVGALSAGM 407 Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V D + I GD V+VK S ++ + Sbjct: 408 VEEQVMRIPDHDEIAASILRQARPGDFVLVKGSRGMRMEKVAEAIR 453 >gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] Length = 453 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 131/463 (28%), Positives = 208/463 (44%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + IG + +S D+R ++ F A+KG +D HD+ AV+ GA Sbjct: 5 SLQQLATVLNAQLIG--ENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ ++ + P V D AL +LA R +S A ++A+TGS GKT+ KEM Sbjct: 63 AALLVSKRLL-----VDEPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + F + ELG +H+GEI + T LVRP Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL G +N D + F Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHW-QVMLNHKTV 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + + DF ++ + + +V+ G H N L + Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALAMS 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A ++ LS GR L+D+SYNAN SM AA VL+++ Sbjct: 297 VGATLEAVKSGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLAEMP- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ + H + E + I V G + A S + Sbjct: 353 ---GYRVMVVGDMGELGDEAPECHRQVGEAARVAGIDRVLSVGTLSELIGTA---SGNGE 406 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + L ++ + + +V V+VK S S ++++ L E Sbjct: 407 HFQDKAALVSRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449 >gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] Length = 452 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGATLDAIKAGLANLKAVPGRLFPIQLVEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ HI + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces himastatinicus ATCC 53653] Length = 475 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 201/474 (42%), Gaps = 13/474 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + ++ + G I P V G + IDSR + P F A+ G H DGHD+ Sbjct: 1 MIPL-SLTEITGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGEHVDGHDYAR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV+ GA V+ + S +P V DV+ A+ +A A R T++A+TGS G Sbjct: 60 GAVEAGAVAVLATRPV--STPDAPVPALVVPDVVAAMGAIARAVVERLGTTVVALTGSAG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS+NN IG+PLT R + E+G G IR+L Sbjct: 118 KTSTKDLIAQLLQRHGPTVWTHGSFNNEIGLPLTALRADTTTQHLVLEMGARGKGHIRYL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L + + L Sbjct: 178 TDLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPSAEDG-GVAVLNADDPLVRA 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + FG++ +A + + ++ L + Y Sbjct: 237 MASRTKARTVLFGEAGDAHVRASNVRL-ADGGRPAFTLHTPTGCGDVTMRLYGEHHVSNA 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A+++ + R T+++++YNANP SM+AA+ Sbjct: 296 LAAAAVAHETGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVNDAYNANPESMRAALR 355 Query: 359 VLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416 L+ + GRR AVLG M E+G+ S + H + + N+S + G L Sbjct: 356 ALAAMGAATPGRRTWAVLGPMAELGDESLAEHDAVGRLAVRLNVSKLVAVGGREAAWLDM 415 Query: 417 ALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G +L LLE Sbjct: 416 GAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLVKASRSVGLEQLAQALLE 469 >gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] Length = 478 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 205/468 (43%), Positives = 276/468 (58%), Gaps = 2/468 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LWT + +A+ G +P+ +NGISIDSR+IAP EA+FAIKG +DGH F+ A+ Sbjct: 3 TALWTTAAMAEAMHATRSGALPE-SINGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAAL 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + G GL V+ A S +P+ V DVL L LA AAR R++A I+A+TGSVGKT+ Sbjct: 62 KNGGGLAVIAQSQRAKF-SGDLPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTS 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L L + T+ S+NNH GVPL+LAR P D F +FE+GM+H GEI L L Sbjct: 121 TKEALRTVLQAQGATHVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAGEIEPLVKL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+S F L ++ A Sbjct: 181 VRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFARLAERAKA 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ I +FG++++AD +L +E S + + + G HMA N L L Sbjct: 241 CGVARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLA 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +++ D+ + AL+ F P GRG R+ L G TLIDESYNANPASM AA+SVL Sbjct: 301 ASTLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLG 360 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +++ +GRRIAVLGDM E+G + H LA ++ I V+ G + L DALP + Sbjct: 361 RVAIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFCCGPLMHDLWDALPSA 420 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 YSET GL + + + GD ++VK S ++ L + FP Sbjct: 421 RKGGYSETSVGLESQLVAGVRAGDAIMVKGSLGSRMKVIVTALEKNFP 468 >gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 448 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 216/463 (46%), Gaps = 22/463 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI G V SI+S++I F +KG +DGHDFI A+Q GA Sbjct: 5 LSEIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAI 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEM 125 + D L +P V+D L AL LA R + ++ +TGSVGKT+TKE Sbjct: 65 SFISQKD----FDDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEY 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ + +P Sbjct: 121 IFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPD 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + + Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL----KR 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + G ++F+ + ++ + +H N L + + +I Sbjct: 237 KVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIESFNFHDIYNSLFAIAVGTI 292 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + +A+ + R + +G T++D++YNA+ SM +AI + + Sbjct: 293 LGVDRELIKEAIRQKERLKRRF----EVIKKGSITIVDDTYNASTHSMLSAIDSICEF-- 346 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 +G++I VLGDM E+GE S+ H + + I V +G + D + + Sbjct: 347 --DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVICTGKDAFYIFDEVKKKDGTK 404 Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Y T D ++ + ++ K+S +++ L+E Sbjct: 405 AYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447 >gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] Length = 453 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 207/468 (44%), Gaps = 21/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + L + +G ++ +S D+R + F A++G +D HD+ A Sbjct: 1 MISV-SLRQLADVLGARLVG--EDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V+ + + +P VDD AL +A R +S+A ++A+TGS GKT Sbjct: 58 VNDGAAALLVSKHL-----PIDVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G++NN IGVPLTL R+ + D+ + ELG +H+GEI + T Sbjct: 113 SVKEMTAAILRQCGNVLYTAGNFNNDIGVPLTLFRLMPEHDYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP A++ +A AHL F +E +A AK EIF GL G LN D Sbjct: 173 MVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFSGLPAQGVAILNADSHDEARWHDA-L 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + +S DF + + + V G H N L Sbjct: 232 AGKTRWRFSPQARAGVDFYASDVGISERGTDFVLHTPAGDIAVTLPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR L+D+SYNAN SM AA VL Sbjct: 292 ALSLAVGASLDAVKAGLAQLQAVPGRLF---PIALAPGKLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G+ +Q+ H + E NI V G + DA Sbjct: 349 AEMP----GYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVLSVGVLSALIGDA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSS-LVDGDV-VVVKSSNSCGFYRLINLLLE 466 S + + L +++ + V++K S S ++++ L E Sbjct: 402 SGTGEHFDNKTALIARLRALVAQHNTITVLIKGSRSAAMEQVVHALQE 449 >gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 198/469 (42%), Gaps = 22/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ A G G V+ + IDSR + F AI+G DGH FI ++ Sbjct: 4 MTLKEIAVACGGIYYGDDESYYKEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIR 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + I + S P V AL +A R ++ +TGSVGKT+T Sbjct: 64 DGALCALSEKR----IENASYPYILVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L G++NN IG+PLT+ + + + + ELG+S+ GE+ L + Sbjct: 120 KEMIASVLGEKYNVLKTAGNFNNEIGLPLTIFNIREEHEVAVLELGISNFGEMERLAKIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT I AHL + + I AK EIF + G+I LN DD + H Sbjct: 180 RPDICVITNIGVAHLEHLKSRDGILKAKTEIFLYMNPNGSIILNGDDDKLSTV----HPA 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 FG + DF + + C + + G HM N L + Sbjct: 236 NGIQPVFFGLDDSRDFYADQVESCGLRGTNAVFHTPNSTFSAHISIPGEHMVLNALAGIA 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L + + + P GR T+ID+ YNANPAS KA++ VL+ Sbjct: 296 AGYALGMNDEEIKAGIEALVPLAGRNNLIE----TDSLTIIDDCYNANPASTKASLDVLA 351 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + R+IAVLGDM E+G + H ++ + + I + G + Sbjct: 352 ----KADTRQIAVLGDMFELGPTEKQMHYEVGKYAAGLGIDILVCIGQLSEHMATGASEQ 407 Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V Y ET D F L D V+VK+SN F ++++L E Sbjct: 408 CSKTQVFYFETKDDFFEQADRILNPKDTVLVKASNGMKFSEIVSVLKER 456 >gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium wasabiae WPP163] Length = 453 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 129/463 (27%), Positives = 207/463 (44%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + IG + +S D+R ++ F A+KG +D HD+ AV+ GA Sbjct: 5 SLQQLATVLNAQLIG--ENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ + + +P V D AL +L R +S A ++A+TGS GKT+ KEM Sbjct: 63 AALLVSKRL-----HIDVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + F + ELG +H+GEI + T LVRP Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL G +N D + F + + + Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVTLNHKTVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + N DF ++ + + +V+ G H N L + Sbjct: 238 R-FSPQAACNIDFFASDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALAMS 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A ++ LS GR L+D+SYNAN SM AA VL+ + Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLADMP- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ + H + E + I V G + + + Sbjct: 353 ---GYRVMVVGDMGELGDDAPECHRQVGEAARVAGIDCVLSVGTLSKLISQ---SNGNGE 406 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + L ++ + + +V V+VK S S ++++ L E Sbjct: 407 HFHDKAALISRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449 >gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 130/463 (28%), Positives = 215/463 (46%), Gaps = 17/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF+++ +A+ G I + N +SID+R ++ F AI G +++G+ FI +AVQKG Sbjct: 1 MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 60 Query: 65 AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A L +V+ I + V+D AL LA R ++AITGS GKT+TK Sbjct: 61 AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L S + + G++NN IG+PL + ++ + + E+GM+H EI + R Sbjct: 121 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +H+ N E I AK EI + K + +N D+ + + KS + Sbjct: 181 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLLKKHEFKSINVL 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ G + L + E + ++V + G H +N ++++ Sbjct: 241 KTSLNKEGNLNAENLCLHEGNSEFE---------VQGEKLVLNMPGKHNIENAMLSIAAA 291 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + K L R +N ++D+SYNA+P SM AAI V + Sbjct: 292 LKLGLTFEEIRKGLKDLELTAMRLD----IVNGENIVIVDDSYNASPDSMIAAIDVTKNL 347 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RIAVLG M E+GE S H ++ NI + + G A D + Sbjct: 348 KGNR---RIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 404 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ET + L F+++ + GD+ ++K+S F ++ L E Sbjct: 405 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 447 >gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] Length = 966 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 210/469 (44%), Gaps = 8/469 (1%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ D+ +A + + + I D+R IA F A++G +DG DF AV+KG Sbjct: 501 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 560 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V D + + V D L A ++A A R + ++AITGS GKTTTK+ Sbjct: 561 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 620 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + +YNN IG+PLTL + + + E+GM LG+I L L P Sbjct: 621 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 680 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++T + H+ IE IA AKAE+ E +E GT+ LN DD+ ++ K A Sbjct: 681 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREK--AKAG 738 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIV 303 + +FG S++AD + + ++ + + H ++ + Sbjct: 739 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 798 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + ++ + K G +T ++++YNA+P S +A++ L+++ Sbjct: 799 IAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTLAEM 858 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 GR+IAVLGDM E+G S+S H + E + + V G + +A Sbjct: 859 FA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEAAKAGGV 915 Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 V + + ++ L GD V+ K S +I LL + A Sbjct: 916 PLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 964 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 153/482 (31%), Gaps = 50/482 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T +L ++G I + I DSR + F AI+G H DGH FI AV+K Sbjct: 1 MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA ++ ++ I + V V ++ AL + K II ITG+ GKTT Sbjct: 61 GACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTT 118 Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTL-------------ARMPVDVDFGIF 165 T M L I +P+ +DF + Sbjct: 119 TSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVM 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF- 224 E+ S + + AV T + HL +E AKA +F+ + + G Sbjct: 179 EV--SSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEG 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + A ++ K A + + + + + M++ Sbjct: 237 KTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDLS 296 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N++ +G + +AL F GR + Sbjct: 297 LGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVD--- 353 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ ++ +I+ GR + V G G + ++ V Sbjct: 354 -YAHTPDGLENILNTAREIAA---GRILTVFG----CGGDRDRTKRPIMGRIAAALSDVV 405 Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 ++ + + + + H ++ + + D+V++ Sbjct: 406 LVTSDNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVR-AVALAEKDDIVIIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale DSM 17629] Length = 464 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 201/472 (42%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L TF ++ +A +G IG + G IDSR + F IKG DGH FI Sbjct: 6 MKNL-TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIP 64 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + ++GA +V+ ++ G P V A+ KLA R ++ ITGSVG Sbjct: 65 NVFEQGAAIVLSEHELKDPAG----PYVLVGSTTDAMKKLAAFYRKSLDIKVVGITGSVG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM++ L + G++NN IG+PLT+ + + E+G+S GE+ L Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P + VIT I HL + + AK E FE + LN DD ++ Sbjct: 181 STMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTV 240 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I + + + + H G H N + Sbjct: 241 NGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAQIHIPGEHNVYNAM 300 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + GR + T+ID+ YNANP SMK++I Sbjct: 301 AAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTHG----MTVIDDCYNANPVSMKSSI 356 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL H +GR IAVLGDM E+G + H ++ E + +I ++ +G Sbjct: 357 EVL----SHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKEYAAG 412 Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +HY E + + + S + +GD ++VK+S+ F +++ L E Sbjct: 413 AAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464 >gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 455 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 215/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S+ + + + DSR P F + G DGHDF+ +A+ GA Sbjct: 5 LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAE 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +PV V+D L AL LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWKKGHEGK--PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + Sbjct: 121 AAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + A + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++ + ++ + IG H N L + + Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNDSEQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + +AL+ F P R + ++D+ YN+NP ++KA + Q+ Sbjct: 295 GENYEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVMVK 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ ++L G + L DAL + Sbjct: 352 DGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAAN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 412 LHYYPQDEMNHMIDDLKNDIKPDDIVMLKGSHGMHLEKVLDRLM 455 >gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] Length = 452 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 213/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLAGILGGELKGD--DLTLDAVTTDTRKLTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DCDLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + DF + ELG +H GEI + Sbjct: 113 SVKEMAAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + ++DF S + +Q S++V+ G H N L Sbjct: 233 DRKVWR--FSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A + L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 SLSMAAGAPLAAIKAGLANLKAVPGRLFPVQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + I V +G A+ +A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTGKLSQAISEA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + L +++ + + ++VK S S ++ L E+ Sbjct: 401 SGVGEHFADKTALIARLKALVEEQQMITILVKGSRSAAMEEVVRALQEK 449 >gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus amylolyticus DSM 11664] gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus amylolyticus DSM 11664] Length = 455 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 209/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ + + + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 5 LAEIAKALN-TTCESDEKTIITSVAFDSRKITDGGLFVPLEGER-DGHDFVAGAINNGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I V VDD L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLW--KKGHPNKPDDIAVLEVDDPLEAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P + Sbjct: 121 AAVLSKRFNVHKTQENFNNGIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L + G N D+ K + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIYNGDEPLLAERAKKINQAKA-- 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG N ++ + + + IG H N + + + Sbjct: 239 --TFGFEDNDTVYATGFRSYKHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGHHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + +L+ F P R + + + + ++ + YN+NP +++A ++ QI Sbjct: 295 GESDEEIAASLANFTPTANRMEWEKGDVGED---IMSDVYNSNPTAVRAVLNSFGQIEMP 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ V+L G + L +AL S Sbjct: 352 NGGRRIAVLGDMLELGKKSPELHAGLANSLDPQVINEVYLIGDEMKHLYEALQTKYSEES 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + ++ MD + +++ + D+VV+K S+ +++ L Sbjct: 412 LHYYQADHMDHMIDDLKNDIKPNDIVVLKGSHGMHLEKVVARLR 455 >gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 448 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 222/469 (47%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LW ++ +A+ G V SI+S+SI F +KG +DGHDF+ A Sbjct: 1 MN-LW-LSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 +Q GA + D L +P V D L AL LA AR + ++ +TGSVGK Sbjct: 59 LQNGAISFISQKD----FDDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE + LS + + G++NNHIG+P+++ MP D +FE+GMS+ GEI L+ Sbjct: 115 TSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I VIT I AH+ N I AK+EI +G+ ++G + +N D+ L K + Sbjct: 175 QIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEF 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G ++F+ + ++ + +H N L Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQKHQNGFS----FEVGGYTYFIKSFNFHDIYNSLFA 286 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +IL D + +A+ + R +N+G T++D++YNA+ SM +AI Sbjct: 287 IAVGTILEIDRELIKEAILQKERLKRRF----EVINKGSITVVDDTYNASTHSMLSAIDS 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + +G++I VLGDM E+GE S+ H + + I V +G + D Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFYIFDEAK 398 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + V Y + D ++ + ++ K+S +++ L+E Sbjct: 399 KKDGVKAYFVSKDECLDVLKREVTSNCTILFKASRGIKLDEVVDEFLKE 447 >gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] Length = 968 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 210/469 (44%), Gaps = 8/469 (1%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ D+ +A + + + I D+R IA F A++G +DG DF AV+KG Sbjct: 503 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 562 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V D + + V D L A ++A A R + ++AITGS GKTTTK+ Sbjct: 563 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 622 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + +YNN IG+PLTL + + + E+GM LG+I L L P Sbjct: 623 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 682 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++T + H+ IE IA AKAE+ E +E GT+ LN DD+ ++ K A Sbjct: 683 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREK--AKAG 740 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIV 303 + +FG S++AD + + ++ + + H ++ + Sbjct: 741 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 800 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + ++ + K G +T ++++YNA+P S +A++ L+++ Sbjct: 801 IAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTLAEM 860 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 GR+IAVLGDM E+G S+S H + E + + V G + +A Sbjct: 861 FA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEAAKAGGV 917 Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 V + + ++ L GD V+ K S +I LL + A Sbjct: 918 PLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 966 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 83/483 (17%), Positives = 153/483 (31%), Gaps = 50/483 (10%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T +L ++G I + I DSR + F AI+G H DGH FI AV+ Sbjct: 2 AMKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVE 61 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 KGA ++ ++ I + V V ++ AL + K II ITG+ GKT Sbjct: 62 KGACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKT 119 Query: 121 TTKEMLTIALSSIKKT---YACIGSYNNHIGVPLTL-------------ARMPVDVDFGI 164 TT M L I +P+ +DF + Sbjct: 120 TTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVV 179 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ S + + AV T + HL +E AKA +F+ + + G Sbjct: 180 MEV--SSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKE 237 Query: 225 -LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + A ++ K A + + + + + M++ Sbjct: 238 GKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDL 297 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N++ +G + +AL F GR + Sbjct: 298 SLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVD-- 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++ ++ +I+ GR + V G G + ++ Sbjct: 356 --YAHTPDGLENILNTAREIAA---GRILTVFG----CGGDRDRTKRPIMGRIAAALSDV 406 Query: 404 VWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V ++ + + + + H ++ + + D+V++ Sbjct: 407 VLVTSDNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVR-AVALAEKDDIVIIA 465 Query: 450 -KS 451 K Sbjct: 466 GKG 468 >gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 463 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 146/464 (31%), Positives = 204/464 (43%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ G G V G+S DSRS+ + F ++GP +DGHDFI AVQ GA Sbjct: 5 LTQIMTITGGDLTPERADGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I L +PV V D L AL LA A R ++A+TGS GKTTTKEML Sbjct: 65 ACLSE----EVIAGLPVPVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEML 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + G++NN IG+P TL R+ D + + ELGMS GEI L + RP I Sbjct: 121 AGILALRGEGLKTEGNFNNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDI 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT + PAHL ++ +A AK E+F L GT +N DD L Sbjct: 181 GVITNVGPAHLETLHNLQGVARAKGELFAALPAGGTAVINGDDPRVLQL----PVANGVR 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +G +A+ + + + L G+S V G + N L L Sbjct: 237 RLIYGCGSDAEVRAEDIAVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHAL 296 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 ++ L F GR A TL+++ YNANP ++KAA+S L ++ Sbjct: 297 KVGGAQIVEGLEAFRSCAGRMAVAELASG---ATLLEDFYNANPLAVKAALSALDEMP-- 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422 G GRRIAVLGDM E+G+ + H S + + L G + Sbjct: 352 GSGRRIAVLGDMLELGDAASEMHRQTGLDASKC-VDLLILLGERAEDTAAGARQGGMPPQ 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V ++ D + L GD V+VK S ++ N L Sbjct: 411 SVWVVKSHDEAVQLLAGILRPGDRVLVKGSRGMTMEKICNALRA 454 >gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces bingchenggensis BCW-1] Length = 480 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 131/476 (27%), Positives = 197/476 (41%), Gaps = 13/476 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + +++ + G I V G + IDSR + P F A+ G DGHDF Sbjct: 1 MIAL-SLAEIIGIVGGQPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV GA V+ + A+ +P V DV AL LA A LR AT++A+TGS G Sbjct: 60 RAVADGAVAVLAARPVPAAAADAPVPSIVVPDVQAALGALARAVVLRLDATVVALTGSAG 119 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + E+G G IR+L Sbjct: 120 KTSTKDLIAQLLRRHGPTVWTPGSLNNEIGLPLTAMSADETTRHLVLEMGARGKGHIRYL 179 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P + ++ + AH+ F G E IA AK E+ E L + + L Sbjct: 180 TDLTPPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEALPAAAEG-GVALLNADDPLVRA 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 FG++ +AD + + ++ L + Y Sbjct: 239 MATRTKARTVLFGEAADADVRAENVRL-ADGGRPSFTLHTPTGCSEVTMRLYGEHHVSNA 297 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A+++ + R + T+++++YNANP SM+AA+ Sbjct: 298 LAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERRDGVTVVNDAYNANPESMRAALR 357 Query: 359 VLSQISPHG---EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L + G GR AVLG M E+GE S + H + + N+S + G L Sbjct: 358 ALVAMGTAGQAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWL 417 Query: 415 KDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G R+ LLE Sbjct: 418 DMGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLVKASRSVGLERVAQALLE 473 >gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum EA 2018] Length = 455 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 130/463 (28%), Positives = 215/463 (46%), Gaps = 17/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF+++ +A+ G I + N +SID+R ++ F AI G +++G+ FI +AVQKG Sbjct: 4 LTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 63 Query: 65 AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A L +V+ I + V+D AL LA R ++AITGS GKT+TK Sbjct: 64 AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L S + + G++NN IG+PL + ++ + + E+GM+H EI + R Sbjct: 124 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +H+ N E I AK EI + K + +N D+ + + KS + Sbjct: 184 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLLKKHEFKSINVL 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ G + L + E + ++V + G H +N ++++ Sbjct: 244 KTSLNKEGNLNAENLCLHEGNSEFE---------VQGEKLVLNMPGKHNIENAMLSIAAA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + K L R +N ++D+SYNA+P SM AAI V + Sbjct: 295 LKLGLTFEEIRKGLKDLELTAMRLD----IVNGENIVIVDDSYNASPDSMIAAIDVTKNL 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RIAVLG M E+GE S H ++ NI + + G A D + Sbjct: 351 KGNR---RIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ET + L F+++ + GD+ ++K+S F ++ L E Sbjct: 408 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 450 >gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 453 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 130/463 (28%), Positives = 208/463 (44%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + IG ++ +S D+R +A F A+KG +D HD+ AV+ GA Sbjct: 5 SLQQLATVLNAQLIGESID--IDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ + +++P V D AL +L R +S A ++A+TGS GKT+ KEM Sbjct: 63 AALLVSKHL-----PINVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + F + ELG +H+GEI + T LVRP Sbjct: 118 TAAILRHCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL G +N D + F Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPADGVAIVNADSNDFPHW-QVMLNHKTV 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + + DF ++ + + +V+ G H N L + Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLAMS 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A ++ LS GR L+D+SYNAN SM AA VL+++ Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLAEMP- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ + H + E I V G + A S + Sbjct: 353 ---GYRVMVVGDMGELGDEAPECHRQVGEAARAAGIDRVLSVGTLSELIGTA---SGNGE 406 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + L ++ + + +V V++K S S ++++ L E Sbjct: 407 HFQDKAALVSRLKVLMSEHNVISVLIKGSRSAAMEQVVHALQE 449 >gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 460 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 214/467 (45%), Gaps = 13/467 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++F+++ +A + G +SIDSR+I + F A+KG +DGHDF+++A +KG Sbjct: 4 FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+++ S VF V D A LA R+R ++A+TGS GKTTTK+ Sbjct: 64 ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+++ LSS + + NN IG+ LTL + + D + E+GM G+I L ++ +P Sbjct: 124 MISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIEELCNIAKP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I VIT + +H+ E IA AK E+ + L + G LN DDSF + + Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKG--- 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +G + N K + + ++ +V +G H + L Sbjct: 241 -RVIYYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTAR 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 IL DV + LS F P + + +ID++YNANP SM+ A+ L QIS Sbjct: 300 ILGVDVTKIQRVLSDFSP----RAGRQSLIEINGIKIIDDAYNANPLSMEMALRSLKQIS 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422 + VL DM E+G+ + FH ++ + + G + Sbjct: 356 AKNK---YLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGAKEKGMK 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 ++ +T I + GDV ++K S+S Y + +LL EE Sbjct: 413 MIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459 >gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] Length = 462 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 217/468 (46%), Gaps = 18/468 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +++ A+QG + N IS D+R I + F A+KG +++G+++I A G Sbjct: 4 MTFDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNG 63 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +++ + V+D AL +LA A R + +I ITGS GKT+TK Sbjct: 64 ASMCIIDEIKYREDEIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++L ALSS K + G++NN IG+PL + ++ D + E+GM++L EI + + Sbjct: 124 DLLAAALSSKYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLNEIHRMAEAAK 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT + +H+ N E I AK EI + +K + +N D+ +K+ Sbjct: 184 PDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDLLSGVKS-----N 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLG 301 +IY+ G + + V+ GK E H G H N L+ + Sbjct: 239 KFSIYTTGMENGNNLNACDIELKENFVEFSVEENGKKFEETFHVEIPGKHTISNSLLAIA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 IL + + L R + F ++++ YNANP SMKAAI VL Sbjct: 299 CGRILGMENKDIKEGLKNLQTTAMRMDLIKGKK----FNILNDCYNANPDSMKAAIDVLK 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + RIAVLG M E+GE S H ++ E + + + G + A ++ S Sbjct: 355 NVESSR---RIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGEYNKAFEEGFKSS 411 Query: 422 IHVHY--SETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLE 466 Y + ++ + L +GD V+VK+S S F +++ L + Sbjct: 412 TKAEYKAFDDYSEGIKYLVNGYLKEGDTVLVKASRSMKFEKIVEELKK 459 >gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] Length = 452 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLYPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale M104/1] Length = 464 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 201/472 (42%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L TF ++ +A +G IG + G IDSR + F IKG DGH FI Sbjct: 6 MKNL-TFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFIP 64 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++GA +V+ ++ G P V+ A+ KLA R ++ ITGSVG Sbjct: 65 TVFEQGAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM++ L + G++NN IG+PLT+ + + E+G+S GE+ L Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P + VIT I HL + + AK E FE + LN DD ++ Sbjct: 181 STMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTV 240 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I + + + + H G H N + Sbjct: 241 NGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAHIHIPGEHNVYNAM 300 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + GR + T+ID+ YNANP SMK++I Sbjct: 301 AAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTHG----MTVIDDCYNANPVSMKSSI 356 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL H +GR IAVLGDM E+G + H ++ E + +I ++ +G Sbjct: 357 EVL----SHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKEYAAG 412 Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +HY E + + + S + +GD ++VK+S+ F +++ L E Sbjct: 413 AAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464 >gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] Length = 452 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L+ T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ HI + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya novella DSM 506] gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya novella DSM 506] Length = 479 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 203/468 (43%), Positives = 272/468 (58%), Gaps = 4/468 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L A+ G IG P + G+SID+R++ P + FFAI+G + DGH ++ A Sbjct: 6 PLWTPDALAAAVGGTLIG-APARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMAAD 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA L VV D V ++ + VDDVLGAL AAR R++A I+ +TGSVGKTTT Sbjct: 65 RGAALSVVERDRVGTLPE-GAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L +AL + T+A SYNNH GVPL+LARMP +G+FELGM+H GEI L +V Sbjct: 124 KEALLLALGADGPTHASAASYNNHWGVPLSLARMPASSAYGVFELGMNHAGEIEPLVKMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+AVITTI P H++ F +E IA AKAEIF G+E G LN D+ FE L A + A Sbjct: 184 RPHVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGAAVLNRDNPHFERLAAAARAA 243 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI+ I FG++ +A +L K ++ S + G+++ G H+ QN L L Sbjct: 244 GIQNIVGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVLAA 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ A ALS P GRG R + GF TLIDESYNANPASM+AA++VL Sbjct: 304 ARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVLGT 363 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G GRR+AVLGDM E+G ++ H + + V+ +G + AL +ALP + Sbjct: 364 APVEGRGRRLAVLGDMLELGPRGEAMHA--DIAPAAASADLVFCAGPLMRALWEALPENR 421 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ L + L GDVV+VK SN L L+E FPA Sbjct: 422 RGAWAPDARALLPLVAERLRGGDVVMVKGSNGSRMGPLARALVERFPA 469 >gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 466 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 171/466 (36%), Positives = 260/466 (55%), Gaps = 8/466 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G +IG V+GISID+R++ + F A+K DGH+F+ A Sbjct: 1 MSALWTSQEAAVATAGQAIG---DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V + P+ V+DV AL L AAR R+ A ++A+TGSVGKT Sbjct: 57 LEKGAGAALVTH--RPDDVAEDAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L+ +T+A + SYNNH GVPLTLARMP + +F + E+GM+H GEI L Sbjct: 115 STKEMLATMLADQGRTHAAVASYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPLAR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPH+A++TT+A HL F + IA KA I EGLE G LN D + ++LK ++ Sbjct: 175 QARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEEAE 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LG++ ++ ++L + + E + +V++ GK +E+ +G H A N L L Sbjct: 235 RLGVQHLWF--GESGQGYRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALGAL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ L D A + L+++ P +GRG R + G ++D+SYNANP SM AA+ VL Sbjct: 293 VCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALEVL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GR+IA LGDM E+G H +A++ ++ +I + G + L ALP Sbjct: 353 AATPNPEKGRKIAYLGDMGELGPKEAELHRGMADLKAVSDIDCIHCIGPLMANLHAALPE 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + T + L GD+V+ K S S G ++++ + E Sbjct: 413 ARRGKHYATSSDALPDLAGQLSCGDIVLAKGSLSTGLGKIVDGIRE 458 >gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] Length = 451 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 125/461 (27%), Positives = 199/461 (43%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + G++IDSR+I F KG + DGH FI A++ GA Sbjct: 5 TLQQIQNWISCEIDEQYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + P+ V+D L AL LA A +IA+TGS GKTTTK+M Sbjct: 65 VASFSEK-GTELSEDVEGPIIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ K G+YNN IG+PLT+ + D + I E+GMS EI L+ + P Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLTPHVKQIQQAKL- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G +E + V +G H +N + + + Sbjct: 243 --ISVGLGDANSLVCHVDDVETEGIGFTINND---ESYVLPILGIHNMKNAAIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L T + + + G R T+I+++YNA+P SMKAAI LS + Sbjct: 298 LGLPYATIKENIRH---VQLTGMRMERHQTDDNVTVINDAYNASPTSMKAAIDTLSSM-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424 EGR+I +L D+ E+G SQ H ++ L +I ++ G + + + Sbjct: 353 --EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFTYGTEAEYIFNTGQSYVETA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + L +++ + + D ++VK S ++ L+ Sbjct: 411 KHFDDKSELIKELKAIVKENDKILVKGSRGMKLEEVVEALI 451 >gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O11] Length = 452 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F KG + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ ++D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQR-GTPIDENVSGPIIWIEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] Length = 452 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ HI + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185] gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185] Length = 452 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] Length = 455 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 218/465 (46%), Gaps = 15/465 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L F ++++AI G N +S D+R I F A+KG +++ +D+I+ A +K Sbjct: 3 LLKFEEIVEAIHGKIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEASKK 62 Query: 64 GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L +V+ + + V V + AL LA R + +I ITGS GKT+T Sbjct: 63 GANLCIVDEIKFNENDLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++ ALSS K + G++NN IG+PL + + D + E+GMS EI L + Sbjct: 123 KDLTAAALSSKFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEIHRLAKVA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP IA+IT I +H+ N E I AK EI + + + +N ++ + + + + + Sbjct: 183 RPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDISSDDYKV 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 S G ++ ++ V K+ + G H N L+ + Sbjct: 243 -----ISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLAIAA 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + D + + + FT++D+ YNA+P SMKAAI V++ Sbjct: 298 GRVLNIEYDKLKEGIKNLS----VTSMRLDIVKGKKFTIVDDCYNASPDSMKAAIDVMNT 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I+ + IAVLG M E+G S FH ++AE + NI + G A K+ ++ Sbjct: 354 ITGKRK---IAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGEFNEAYKEGFNKNS 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ET++ F +++ D+++VK+S S F ++N L ++ Sbjct: 411 K--QFETIEDAAEFTTNNINKDDIILVKASRSMKFEYIVNKLKDK 453 >gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU121] Length = 453 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 132/462 (28%), Positives = 204/462 (44%), Gaps = 14/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + G++IDSR+I F KG + DGH F+ A++ GA Sbjct: 5 TLKQIKAWIDCEIDEQYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G D+ S P+ VDD L AL LA A +IA+TGS GKTTTK+M Sbjct: 65 GASFYQKDVSLSENIEG-PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ K G+YNN IG+PLT+ + D D I E+GMS EI L+ + P Sbjct: 124 IESVLNTEFKVKKTQGNYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAQAKSEITIGLKPNGTFIYDGDEPLLKPHVEQIQQAN-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + ++ + + E+ GI + + +G Sbjct: 242 -CISIGLEQGNSLVCSVNEEIDTEGIAFTINHQQQYELPILGIHNMKNAAIAIAIGQELG 300 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L+ + + G R + T+I+++YNA+P SMKAAI LS + Sbjct: 301 LSYETIQH-----NIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM-- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GR+I VLGD+ E+G+ SQS H ++ L I + G + + + + Sbjct: 354 --NGRKIIVLGDVLELGDNSQSMHEEVGSYLQNKQIDQLITFGSEATFIYNTGKQYVDEA 411 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+ D L I + D V++K S +++ L++ Sbjct: 412 HHFNDKDKLISHITQIVQPEDKVLIKGSRGMKLEEVVDALIK 453 >gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895] Length = 452 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 134/468 (28%), Positives = 213/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF +A Sbjct: 1 MISV-TLSQLAGILHGELQG--ADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V+ + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KEGGAGALLVSRPL-----DCDLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL G +N D++ + + Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPVNGIAIMNADNNDWLNWQGIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q ++V+ G H N L Sbjct: 233 DRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGDIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ +A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDSVLSTGKLSQAIGNA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L + + + + + ++VK S S ++ L E Sbjct: 401 SGVGEHFADKSALVARLNTLIAEHQIITILVKGSRSAAMEEVVRALQE 448 >gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia fergusonii B253] Length = 452 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354] gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354] Length = 452 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Parvibaculum lavamentivorans DS-1] gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Parvibaculum lavamentivorans DS-1] Length = 479 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 194/466 (41%), Positives = 269/466 (57%), Gaps = 5/466 (1%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ PLWT D+L A G + G +G+SIDSR++ + F AI G + DGH ++ Sbjct: 1 MSAPLWTKEDVLAATGGKAEGAA--WSASGVSIDSRTLEAGDLFVAIIGENSDGHAYVEG 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++KGA +V+ A + P+ V D L ALN L AAR R+KA ++A+TGSVGK Sbjct: 59 ALKKGAAAAIVSAPTEAMRAAG--PLVIVTDTLAALNALGRAARARTKAKVVAVTGSVGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L + LS T+A SYNN GVPL+LARMP FGIFE+GM+H GEI L+ Sbjct: 117 TGTKEALKLILSEQGATHASAASYNNLWGVPLSLARMPAATRFGIFEVGMNHPGEITPLS 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LV P +++ITT+ H+ F +E+IA AK EIF+GL+K G LN D+ +E L+AK+ Sbjct: 177 KLVEPFVSLITTVEAVHMEFFDSVEQIADAKGEIFDGLQKGGVAILNRDNPHYERLRAKA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G I SFG+ + AD +L K + S + + G+ + G H+ N L Sbjct: 237 EKSGAGRIISFGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAM 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L AD+ A A++ +GRG+R+ + G FTL+DESYNANP SM+AA+ Sbjct: 297 LACVHALEADLAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDA 356 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + P G GRRIAV+GDM E+GE S H LA+ + I V+ G H+ L ALP Sbjct: 357 LGRAKPEGNGRRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVFACGPHMRELYKALP 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + Y+ET L ++ ++ GDVV+VK S L++LL Sbjct: 417 AAAQGAYAETSAELGPLLRDAVEPGDVVMVKGSLGSRMGPLVDLLR 462 >gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] Length = 452 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 206/466 (44%), Gaps = 15/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I + G++IDSR++ PQ F KG H DGH F+ + Sbjct: 1 MIEV-TLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQS 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +Q GA T P+ V D L AL +LA A + +IA+TGS GKT Sbjct: 60 IQDGAAAAFYQTGQEIDSSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ L + K G+YNN IG+PLT+ + D D I E+GMS EI L+ Sbjct: 120 TTKDMIESVLKTQFKVKKTQGNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSS 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IAVIT I +H+ + IA AK+EI GL+ G + D+ + A+ Sbjct: 180 IAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + S G ++ + ++ + + NM Sbjct: 240 HAKL---ISVGLEQHNTYVCTIDSNQNDGIAFNINNTEHYELPIL------GVHNMRNAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +++ + + G R + + T+I+++YNA+P SMKA+I L Sbjct: 291 IAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419 S + EGR+I +L D E+G+ SQ H ++ E L NI ++ G + P Sbjct: 351 SNM----EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQP 406 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H + E+ + + ++ LV GD V+VK S ++N ++ Sbjct: 407 YVSHAQHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVNAII 452 >gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LF82] gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] Length = 452 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli] Length = 452 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALTAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia stali symbiont] Length = 453 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 209/469 (44%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ T L + G G + ++ D+R + F A+ G +D +DF A Sbjct: 1 MIPV-TLQILAEISGGQLHG--SDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++VN + + +P V D A +L R ++KA ++ +TGS GKT Sbjct: 58 IASGAQALLVNRRLA-----VDVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN GVP+TL R+ + + E+G +H GEI + T+ Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTPQHAYAVIEMGANHQGEIAYTTN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F + +A AK EIF GL GT +N D + +++ Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFGGLPVHGTAIINADSNDLPNWQSQ-F 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I +S +A+F+ ++ + + + V G H N L Sbjct: 232 ADKILWRFSPQPMADAEFRASDIVLRADATLFTLHTPRGDIAVELPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L P GR R A N L+D+SYNAN SM AA VL Sbjct: 292 ALALSVDAPLTAIQSGLKTLQPVPGRLFPIRLAGN---QLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R+ V+GDM E+G+ +++ H + E I V +G + + Sbjct: 349 GDMP----GFRVMVVGDMGELGDEAEACHRQVGEAAKAAGIDCVLSTGSFSHLISE---S 401 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467 S + + L +++ L ++VK S S +++ L E+ Sbjct: 402 SGRGEHFASKAELTERLRTLLSQHADITILVKGSRSAAMEQVVQSLQEK 450 >gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412] gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412] gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] Length = 452 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + DF + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDFAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L I+S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALIARIKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli CFT073] gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli CFT073] gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ABU 83972] gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 153-1] Length = 452 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGCHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 461 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 209/471 (44%), Gaps = 19/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL T+ ++ +A G G V G+S DSRS+ + F + G +DGHDFI +A Sbjct: 1 MKPL-TYEEVAKATGGRVEKSF-SGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + GA + D + +L++ PV VDD AL +LA R +AITGSVG Sbjct: 59 FEAGASATLCAEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKEM+ L+ + G++NN IG+PLTL R+ D G+ E+GMS GEI L Sbjct: 119 KTTTKEMIAAVLTRRYRVLKNEGNFNNEIGLPLTLFRL-EDHQVGVVEMGMSGFGEISRL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +V+PH+AVIT I +H+ E IA AK EI E L K + LN D Sbjct: 178 SAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSPELYA---- 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 FG K + +V V G H N L Sbjct: 234 KRGTLTPRTVYFGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALA 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + +D + L P R +ID+ YNA+P SMKAA++ Sbjct: 294 AIAVGLEFGLSIDEIRRGLMELKP---TKMRLEFKKTPFGAVVIDDCYNASPDSMKAALN 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL ++ R++A+LGDM E+G+ + H ++ + + G H L Sbjct: 351 VLREL--GEGRRKVAILGDMLELGDYAVKAHEEIGRYAA-GKTDILICIGNHAEDLAKGA 407 Query: 419 PRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +H T + + D D+++VK+S +++ L+ Sbjct: 408 TEAGLGPRFIHTFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIVDFLV 458 >gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] Length = 452 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 139/467 (29%), Positives = 215/467 (46%), Gaps = 20/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M D+ + G +S D+R++ P + F A+ G +DGH+++ A Sbjct: 1 MIGAIRLADVADFLDAKHRG--ANIPFQSVSTDTRTLQPGDLFVALIGDRFDGHEYVQQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA V+++ M +++P V D AL +L + RLR + ++AITGS GKT Sbjct: 59 IEKGASAVLISKRM-----EVTVPFLQVADTTEALGRLGLYNRLRFENPVVAITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K M+ L + G+ NNHIG PLTL R+ D+ + ELG S LGEI + Sbjct: 114 TVKGMMATLLRQQNEVLVTRGNLNNHIGAPLTLLRLSDSDDYAVIELGASGLGEIAYTAE 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP ++++T AHL F +E I K EI + L G LN D +FE + + Sbjct: 174 LARPTVSILTNAGNAHLEGFGSVEGIVKTKGEIIDALADDGVAVLNADSPYFEEWQKR-- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299 G + + SFG++ +AD + + + + + +V +G H N L Sbjct: 232 -AGSRRVISFGETLSADIRATDIQSNANGCCAFTLHINDEQSQVQLSVMGKHNVFNALAC 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + L +F EGR + +ID+SYNANPAS++AA+ V Sbjct: 291 AAACVALDMPPKLIVSGLQLFEGVEGRLLEKQGLNG---SRIIDDSYNANPASVRAAVDV 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ S H I VLGDM E+G + H ++ I + G DA Sbjct: 348 LASRSSHT----IFVLGDMAELGVETHLAHAEVGAYAREAGIDEFFALGEFSRKAADAFG 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + H+ + D L F+ L V+VK S S R++N ++E Sbjct: 404 DN--AHWFASHDNLIRFLTKKLNKDVTVLVKGSRSSHMDRVVNDIVE 448 >gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 536] gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia coli 536] gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 60-1] Length = 452 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] Length = 456 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 203/463 (43%), Gaps = 15/463 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++A +G + + +S DS SI F I G D H FI A+ GA Sbjct: 6 VRDIVKATKGEVLCGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANGAV 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ + + ++P V + AL ++ I +TGSVGKTTTKEM+ Sbjct: 66 AVLTSE---HDEMTGNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGSVGKTTTKEMI 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ALS+ K + G+ N+ IGVPLTL +M D + E+GMS GE+ L+ LV Sbjct: 123 ACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPDDQIAVIEMGMSMRGEMSRLSELVELDD 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I +H+ + I K I + + I D + K + Sbjct: 183 AVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDD---AILNKHKSELRHR 239 Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I +FG + D+ K + + S + + +G H +N L+ + + Sbjct: 240 IITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNALVAIAVAER 299 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +V AIKAL+ + + + T+ID+SYNA+P SMKA I VL Sbjct: 300 HGIEVTEAIKALAGYEGV----SMRQQITDVNGVTIIDDSYNASPDSMKAGIDVLCDY-- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 + GR+IAVL DM E+G+ S +H ++ ++ I + L G + D S Sbjct: 354 NNNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILFGTMAANIGDGFNGS--YK 411 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + ++ +L GD ++ K S ++ L E + Sbjct: 412 LFKKREEINEYLLKNLKSGDAILFKGSRGMKLNECVDFLKENY 454 >gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei 53G] Length = 452 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A ++ L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLNAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus torques L2-14] Length = 461 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 206/472 (43%), Gaps = 24/472 (5%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ A G G V+ ++IDSR + F AIKG DGH FI ++ Sbjct: 4 MTLSEIADACCGIYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + D +G + P V AL LA R ++ ITGSVGKT+T Sbjct: 64 AGALCSLSEQD----LGDVDYPYIRVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS G++NN IG+PLT+ + + + + E+G+SH G+++ L + Sbjct: 120 KEMIASVLSEKYNVLKTEGNFNNEIGLPLTVFNIREEHEVAVLEMGISHFGDMKPLAKIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + VIT I AHL N + I K+ + + + G++ N DD + ++ Sbjct: 180 RPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGSVIFNGDDDKLKSYTSRDGRT 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + ++ + ++ E G HM N L + + Sbjct: 240 PVYFGLTSS---CPFHVENIERKGLKGTYAEFVTPTSRFHAHISIPGDHMIYNALAGVAV 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D + + + P GR +T+ID+ YNANPASMK+++ VL+ Sbjct: 297 GYALGMDNEEIARGIEKLVPIAGRNNLIEAK----HYTIIDDCYNANPASMKSSLDVLAY 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419 +A+LGDM E+G + H ++ + N + G + +A Sbjct: 353 ADTRK----VAILGDMGELGADELAMHREVGAYAAFKNTDVLVCIGALSKDMAEAAKETV 408 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ V + +T + + ++ L D D +++K+S+ F ++ L EE Sbjct: 409 LATEKNMKVFHFDTKEDFYQNMRQILKDNDTILIKASHFMEFPEIVKKLSEE 460 >gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] Length = 452 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL K G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPKNGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] Length = 481 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 221/472 (46%), Positives = 302/472 (63%), Gaps = 2/472 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT +++ ++G G +P G V GISIDSR++ P EAFFAIKG +DGHDF A+ Sbjct: 8 DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GAGL+VV + + G+ +P+ V+DVL AL +L +AAR RSKA IIA+TGSVGKTT Sbjct: 67 AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS + K +A S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L + Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+ G LN DD F L+ + Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G++ I +FG++ AD++LR K S M V++ V G H+ QNML LG Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ AD+ + A++ + GRG R+ +G FTLIDESYNANP SM+AA+S+L Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366 Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G GRRIAVLGDM E+G S H DLA + ++ +++ G + LK+ALP Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 I Y ++ D L + ++ G VV+VKSSN GF +++ L+ +FP ++ Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGYVVMVKSSNRTGFSKIVKALIAQFPPVE 478 >gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TW10509] Length = 452 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei Ss046] gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii Sb227] gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ATCC 8739] gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SE11] gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sp. D9] gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046] gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227] gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli ATCC 8739] gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11] gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)] gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli BL21(DE3)] gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Escherichia coli 042] gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli W] gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 85-1] gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella flexneri CDC 796-83] gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli EC4100B] gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli EPECa14] gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E128010] gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LT-68] gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1180] gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1357] gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli KO11] gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H120] gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H489] gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TA007] gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 117-3] gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1167] gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 5216-82] gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 3594-74] gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Escherichia coli UMNK88] Length = 452 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] Length = 452 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++VN + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVNRPL-----DIDLPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ HI + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] Length = 455 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 215/465 (46%), Gaps = 15/465 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L F ++++AI G N +S D+R I F A+KG +++ +++I+ A +K Sbjct: 3 LLKFEEIVEAIHGKIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEASKK 62 Query: 64 GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L +V+ + V V++ AL LA R + II ITGS GKT+T Sbjct: 63 GANLCIVDEIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++ AL S K + G++NN IG+PL + + +D + E+GMS EI L + Sbjct: 123 KDLTAAALGSKFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGMSDFSEIHRLAKVA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP IA+IT I +H+ N E I AK EI + K + +N ++ + + + Sbjct: 183 RPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNENDLLKDI-----SS 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I + G ++ ++ V ++ + G H N L+ + Sbjct: 238 NDYNIINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGKHNILNSLLAIAA 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + D + + FT++D+ YNA+P SM+AAI V++ Sbjct: 298 GRVLNIEYDKLKDGIKNLS----VTSMRLDIVKGEKFTIVDDCYNASPDSMRAAIDVMNT 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I + IAVLG M E+G S FH ++AE N+ + G A K+ ++ Sbjct: 354 IKGKRK---IAVLGTMKELGVDSYKFHKEVAEYADSKNVDLLITVGEFNEAYKEGFNKTS 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ET++ FI +++ D+V+VK+S S F ++N L ++ Sbjct: 411 K--QFETIEDAAEFITNNINKDDIVLVKASRSMKFEYIVNKLKDK 453 >gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 207/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ G Q + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 6 AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + +I V VDD L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K + Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAKKLDQVKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R ++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424 +G RIAVLGDM E+G+ S + H L++ L I+ V+L G + L DAL H+ Sbjct: 353 DGCRIAVLGDMLELGKNSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHL 412 Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HY + MD + +++ + D+VV+K S+ ++ L Sbjct: 413 HYYTQDQMDRMIDDLKNDIKPDDIVVLKGSHGMHLENVLARLR 455 >gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli M863] gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli STEC_7v] Length = 452 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] Length = 450 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 118/462 (25%), Positives = 201/462 (43%), Gaps = 16/462 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A+ G I +G N IS D+R I F A+KG +++G+D+ + A++KG Sbjct: 3 LNLAEIIKAVDGEIIVKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKG 62 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +++++ + V D AL LA R + ++ ITGS GKT+TK Sbjct: 63 ASIIIIDDVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS K + G++NN IG+PL + + D D + E+GMS+ GEI L + Sbjct: 123 DLVAAFLSGKYKVFKTQGNFNNEIGLPLMIFELSKDYDIAVLEMGMSNFGEINKLASIAL 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + IT I AH+ E I K I + E ++ +N ++ + + Sbjct: 183 PDVGAITNIGVAHIEYLKTRENILKEKMSITDFFENKNSLIVNCENDMLKTIVE----CD 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + G + + K SE + + V ++ + +G H N L+ + I Sbjct: 239 KFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIGIQI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + K +N+ FT+I++SYNANP SMKAA+ VL Sbjct: 299 ARNFGLTFEEMEKG----LGNFNATSMRLEVINKDKFTIINDSYNANPDSMKAALEVLKN 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 S + IAVLG M E+G+ ++ HI + E + +G K Sbjct: 355 YSGSRK---IAVLGTMGELGDYAEEAHIQVGEFAKD-KADILLTTGEFKEYYKKGF--GE 408 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E+ L + + D +++K+S S F + L Sbjct: 409 RTMVFESKQELMQRLTDMIKVNDTILIKASRSAKFEEITKYL 450 >gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 455 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ QA+ S + + ++ DSR I+ F IKG DGHDF+ A++ GA Sbjct: 5 LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I V V D L A+ LA + T+++ITGS GKTTTK+M+ Sbjct: 63 ATLWEAGN--PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ Y ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F ++IA AK EI + L++ G N D+ L A+ A + Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLPQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + S+ ++ G E IG H N + + + Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + L+ F P R ++ + YN+NP ++KA + Q+ Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 +GRRIAVL DM E+G S H LA L I+ ++L G + L AL ++ Sbjct: 352 EDGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M L ++S + D+V++K S+ R+++ L Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455 >gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Ruminococcus obeum A2-162] Length = 456 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T +L + G G V+ I+ DSR I F I G D H FI Sbjct: 1 MKNL-TLRNLTEVCSGTWHGDDALLDREVSAITTDSRKIEKDCLFVPIVGERVDAHRFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + KGA + ++ P + L A+ +A + + +I ITGSVG Sbjct: 60 DVMAKGALATLSERELS----DADYPYIQITSSLQAVKDIAEFYLQQLQLPVIGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L +T G++NN +G+PLT+ R+ D + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLREDDQIAVLEMGISDFGEMTRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +P VIT I HL N + + AK EIF + +G I LN DD + Sbjct: 176 TRIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLPSGHIVLNGDDDKLATV--- 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 FG D + + + + + +V+ G HM N L Sbjct: 233 -EGYHGVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAFDVLVPTPGIHMVYNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + I ++ + + GR K F ++D+ YNANP SMKA++ Sbjct: 292 AAAAVGRIYGLTIEEIKRGIESLETIRGRFKMIE----TENFLVVDDCYNANPMSMKASL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL GEGRR+A+LGDM E+GE S H ++ E + I G L + +A Sbjct: 348 DVLHD----GEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEA 403 Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ VHY + + L + + GD ++VK+S+ F +++ L + Sbjct: 404 ARKADPDFEVHYEKDRESLLKNLGGYVRKGDTILVKASHFMKFEEVVDALEK 455 >gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] Length = 450 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 210/469 (44%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L + G + ++ID+R + F A+KG +DGHDF A Sbjct: 1 MSELLNAELIATDKGG------NHLEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAG ++V+ ++ + P V D AL + A R + A ++A+TGS GKT Sbjct: 55 VTAGAGALLVSKRLL-----VGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKT 109 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L K G++NN IGVPLTL R+ + DF + ELG +H+GEI + T Sbjct: 110 SVKEMTAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEYDFAVIELGANHVGEIAYTTD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 170 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +++ DF + + + + ++ + G H N L Sbjct: 230 NKRVWRFAP-QAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHNIANGLAAA 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + AD+ + L GR + A L+D++YNAN SM AA VL Sbjct: 289 ALAMSVGADLAAVRQGLMQLQAVPGRLFPIQLAAG---KLLLDDTYNANVGSMTAAAQVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G+ + H + E I V G L DA Sbjct: 346 AEMP----GYRVMVVGDMGELGDTAIDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDA--- 398 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467 S + + + L + L + V V++K S S ++ L E+ Sbjct: 399 SGNGEHFQDKSALAARVSELLSEHPVITVLIKGSRSAAMENVVRALQEK 447 >gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI39] gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI39] Length = 452 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L+ T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFTDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Asticcacaulis excentricus CB 48] gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Asticcacaulis excentricus CB 48] Length = 462 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 175/469 (37%), Positives = 247/469 (52%), Gaps = 12/469 (2%) Query: 1 MNPLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M PLWT +LL+A G G GI+ DSR + P + F A+ G DGHDF+ Sbjct: 1 MTPLWTGTELLKATGGTFAGLSGDASALHATGITFDSRQVQPGDIFLALSGVR-DGHDFV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A +GA + + P V DVL AL KL AR R+ A A+TGSV Sbjct: 60 GQAFAQGAVCALTRKPVD------GGPCLMVPDVLKALEKLGAYARDRAPAMRGAVTGSV 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+ +M+ ALS + ++ + S+NNHIGVPLTLARMP D + +FE+GM+H EI Sbjct: 114 GKTSVTQMVMAALSRAGRAHSAVKSFNNHIGVPLTLARMPADTERAVFEIGMNHANEITP 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ LV P +ITT+ H NF G E + AKAEIF+GL+ G LN D+ +F L Sbjct: 174 LSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGGLAILNADNHWFAELN 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ +G K FG+++ AD L + ++ + L G+ + G H A N Sbjct: 234 ERASEMGAKVQC-FGEAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNA 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L + L D T + ALS F +GRG ++ A+ G TLIDESYNANP SM A Sbjct: 293 LSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVAT 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ++ L+ GRRIAV+ DM E+G H LA L+ + V+++G + AL D Sbjct: 353 LNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVDQVFVAGPLMRALWD 412 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 LP ++ Y+ T L ++++L D+V++K SN + LL Sbjct: 413 VLPEALRGAYAATAAELLEPLKTALRPNDIVMIKGSNGSKAGLIAKSLL 461 >gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hydrogenobacter thermophilus TK-6] Length = 436 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 212/465 (45%), Gaps = 30/465 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + +L +G G +G IDSR + F A++G +DGHDF A Sbjct: 1 MGEL-SARELASICRGKLYG--ESTTFSGFCIDSREVKEGNVFVALRGGRHDGHDFAQEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V + G VDD L AL ++A+ R +I + GS GKT Sbjct: 58 FSRGAVGAIVQRGIKVPKGKF---YVLVDDTLEALRRIALYRRRLFTGRVIGVAGSAGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ LS I K +YN+ IG+P ++A D F + E+G S G+++ L Sbjct: 115 TTKEMIAFLLSKIGKVCKTPKNYNSQIGLPFSIANFEEDCQFWVVEMGASQKGDVKNLVK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +PH+ VIT I HL F ++++ EIFE +++ L S LK Sbjct: 175 LAKPHVRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAVLPKYVSHCYELK---- 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +FG+ D Q K E Q + + + + +N L +L Sbjct: 231 -----NVITFGE--GGDLQATNIKLSKEGIT----FQVEDVSLSLRVPSLAVLENALCSL 279 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G++ L + L+ F P R R F +ID++YNANP S++ A+ L Sbjct: 280 GVLKALGYNWKELSHHLANFSPAPQRFHLIRKGS----FLIIDDTYNANPPSVRKALLSL 335 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-LP 419 S +G RIA+LGDM E+G +S+++H ++ ++ + I G H+ + L Sbjct: 336 SLF----DGYRIALLGDMLELGPMSEAYHREVGKLCAELGIDACIFYGTHMRFAYEECLR 391 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++S + + ++ S + +G V++VK S L+ + Sbjct: 392 HGVLCYHSSSKEEALRYLSSLIREGSVILVKGSRGMKMEDLVREI 436 >gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] Length = 458 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 171/469 (36%), Positives = 236/469 (50%), Gaps = 17/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT ++ QA G V+G++ DSR + + F A+KG DGH F+ A Sbjct: 1 MTDLWTSEEIAQATGG---VASAPFAVSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ +++ P V D AL L +R R + ++ +TGSVGKT Sbjct: 58 FGQGAAGAIVSQ-------TIAQPHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKT 110 Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L AL + + + SYNNH+GVPL+L+RMP + FG+FE+GM+H GE+ L Sbjct: 111 GTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAAL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T VRPH+A++T IAPAH+ F E+IA AKAEIFEGLE GT + YD L AK Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I +FG AD + R+ + + L G + G H N L Sbjct: 231 AEKHAA-RILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSNAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L V L D+ A AL+ GRG+R + G LIDESYNANP SM Sbjct: 290 AVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSM---A 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L Q+ RRIAVLG M E+G+ S+ H L E L+ + + L G + L A Sbjct: 347 ATLKQLGREQADRRIAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLVGEEMDPLAQA 406 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L + + I++ + GD ++VK SN G RL+ L E Sbjct: 407 LGGVMAFDHVPDAARAIDLIRNEMRAGDAILVKGSNGIGLSRLVAALQE 455 >gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] Length = 452 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIYVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum GMI1000] gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum GMI1000] Length = 482 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 121/471 (25%), Positives = 193/471 (40%), Gaps = 16/471 (3%) Query: 4 LWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + D + H +G P + ++ DSR++ P + F A+ G +D HDF+ V Sbjct: 8 MMHATDAAAWMAGAHLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVA 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA V+V+ V + V V D AL +LA R R ++A+TGS GKTT Sbjct: 66 RGAAAVLVSRPPVGIPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 KEM++ + A G+ NN IG+PLTL R+ + ELGM+H GE L Sbjct: 126 KEMISAVFACAVGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLA 185 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P +A+I H +E +A+ A + L G D + Sbjct: 186 AIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLW 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++ ++V G +G H A+N L Sbjct: 246 RAAAGTRRV-LDFGIEGGAVSAAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +ALS F P +GR + +ID++YNANP S++AAI Sbjct: 305 TACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGHHGGLVIDDTYNANPDSVRAAIDA 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + R VLGDM E+G +FH ++ I V +G + +A Sbjct: 362 LATLPA----PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELARHMVEAFG 417 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 418 GGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466 >gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Halanaerobium praevalens DSM 2228] Length = 465 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 199/472 (42%), Gaps = 14/472 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L +++ + + V I IDSR + F AI G + DGH ++ A Sbjct: 1 MQTLK-LKEIVAFTKAELLQGNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEA 59 Query: 61 VQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVG 118 V+ GA V+V+ + A + ++ V V+D AL +A R + +I ITGS G Sbjct: 60 VKNGASAVIVDRNSPAIQAAYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAG 119 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+M+ LS G+YNN IG+PLTL R+ DF I E+GMS L EI L Sbjct: 120 KTTTKDMIFSVLSEKYYCLKTEGNYNNQIGLPLTLLRLDGREDFAILEMGMSGLAEIDLL 179 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P I +IT IA AHL +E IA AK E+ + L T LNYD+ + + + Sbjct: 180 AKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNLTAADTAILNYDNQYTKKIGTN 239 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 S A I + G + K + + Q + N+ Sbjct: 240 SKAQTIYFGFEKGADARIENYFFNSKTETLKFEFTYQAKNYKFIFN-----KAGKHNLYN 294 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + I + + R + +I++ YNANP S+KAA+ Sbjct: 295 ILPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALD 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL QI + IA+L M E+GE S H + + I + G A+ Sbjct: 355 VLEQIKAKRK---IAILASMLELGEKSLKKHQQIGLYAAAKKIDLLITIGPKAQAIATKA 411 Query: 419 P---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +S V F+ S + D++++K S + +++ L + Sbjct: 412 RTKMKSEQVINLANNKECIDFLLSEIKAEDLILIKGSRANKLEEIVDELKSK 463 >gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UTI89] gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli APEC O1] gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli S88] gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli UTI89] gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli APEC O1] gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli S88] gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IHE3034] gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UM146] gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 110-3] gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 16-3] gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H252] gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H263] gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] Length = 452 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella adiacens ATCC 49175] gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella adiacens ATCC 49175] Length = 461 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 135/466 (28%), Positives = 226/466 (48%), Gaps = 13/466 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ +A+ + + ++ D+R + P F +KG DGHD+I A+Q G Sbjct: 5 TVAEITKAVGAIDYQSAHRFETIESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQAG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ I V+D L A KLA + ++ ITGS GKTTTK+ Sbjct: 64 ATAVLWGKK--DLTPPEGICAIWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M AL + + Y G++NN IG+P T+ MP + + E+GMS+ EI FL+ L RP Sbjct: 122 MTAAALGARYRVYKTQGNFNNDIGLPQTILDMPESTEALVLEMGMSNFHEIEFLSKLARP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + IT I +H+ E IA AK EI GL++ GT + A++ Sbjct: 182 EVVAITLIGESHMEQLGSKEGIAKAKLEILSGLQEKGTFIYPAHEDLITAGIAQAEKPAT 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I + G+ + + + + S+ + E+ +++ V +G + N L+ + I Sbjct: 242 FKIVTVGE-GSKELSTKNIELYSDHTAFELVTPTETVAVTLPVLGAYNVSNALLAIEIAR 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + AL+ F + R + Q +++++YNA+P +MK+ I +S Sbjct: 301 TLEVPLSDIVSALANFELTKNR---TQWVKGQNGVAILNDAYNASPIAMKSVIQSF--VS 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 GRR+ VLGD+ E+GE S+ H ++EV+S ++ V+L G + AL DAL + Sbjct: 356 VEATGRRVLVLGDIRELGEHSKELHASISEVISPSEVALVYLYGEEMEALYDALKDQFEI 415 Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ + L +++ L +GD V++KSSN G +++ L E Sbjct: 416 AALHHYMDKEALIADLKAELKEGDQVLIKSSNGTGLLAVVDALKAE 461 >gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] Length = 458 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 129/462 (27%), Positives = 209/462 (45%), Gaps = 18/462 (3%) Query: 6 TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + G + V+G+S D+R+I + ++G ++GHDF+ A QKG Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKG 64 Query: 65 AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A V+ + G + V DD L AL +LA R + +I +TGS GKTTTK Sbjct: 65 AVAVLWAEREGTPPEGVPVVVV---DDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ + G+ NNHIGVPLTL + + + E+GMS GEI LT + R Sbjct: 122 DMIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAR 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AVIT I AHL E IA AK EI GL G + D+ LL + L Sbjct: 182 PDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEP---LLTERVPKLS 238 Query: 244 IKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + D+ + + + ++ + ++ L Sbjct: 239 LPRHVVTFGAGEQNDYYPTDVRIEAGGTSFV----INALPGRTLFMPVLGKHHVYNALAA 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +++ + + R + FT+I+++YNA+P SM+AA+ +L + Sbjct: 295 IAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQE 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LP 419 +S + + IAVLGDM E+G+ +FH ++ EVL + +V+ G + A Sbjct: 355 LSGYRQK--IAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAHHIAAAAAPFF 412 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V + L ++S D+V++K+S L+ Sbjct: 413 DDGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELL 454 >gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 452 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 217/469 (46%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPRGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + T L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTTIKAGLATLKAVPGRLFPVQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ HI + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKRSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L +++ L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLKALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] Length = 455 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 207/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ G Q + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 6 AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + +I V VDD L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K + Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAKKLDQVKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R ++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424 +G RIAVLGDM E+G+ S + H L++ L I+ V+L G + L DAL H+ Sbjct: 353 DGCRIAVLGDMLELGKSSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHL 412 Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HY + MD + +++ + D+VV+K S+ ++ L Sbjct: 413 HYYTQDQMDRMIDDLKNDIKPDDIVVLKGSHGMHLENVLARLR 455 >gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter metallireducens GS-15] gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter metallireducens GS-15] Length = 470 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 207/472 (43%), Gaps = 16/472 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L++ D+ +A G G V G+S DSR++ P E F ++G +DGHD++ A + Sbjct: 2 LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDR 61 Query: 64 GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G +V+ + + VDD L AL LA R R ++A+TGS GKTTT Sbjct: 62 GVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L G+ NN IG+P L R+ + + E+GMS GEI L + Sbjct: 122 KEMLAAILGQTGPGLKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFGEIDRLAEIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + +IT PAHL +E +A AK E+F L G N DD L A+ + Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDP----LIARCPSP 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 SFG ++L +S+ V G H N L Sbjct: 238 DGVRRVSFGLHNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAAA 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L +T + L F P R G LID+SYNANPASM AA++ L + Sbjct: 298 AHVLGVPTETIARGLGEFSP----YARRFNLEEVGDVILIDDSYNANPASMAAALTTLRE 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I R +AVLGDM E+GE ++ H L +L+ + +++ G + Sbjct: 354 IRA--GRRAVAVLGDMLELGEGAEEAHRQLG-LLAATCVDRLYVMGGMAGIVAAGALEGG 410 Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 V + + D + ++ + GD ++VK S R+ + E F A Sbjct: 411 LADDAVTVATSHDAIVADLRRTTAAGDFILVKGSRGLAMDRVAEKMREVFVA 462 >gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii DPC 6026] Length = 455 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S+ + + + DSR P F + G DGHDF+ +A+ GA Sbjct: 5 LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +PV V+D L AL LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM H G++ L+ LVRP + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDHPGQLHHLSELVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + A + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++ + ++ G + + IG H N L + + Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + +AL+ F P R + ++D+ YN+NP ++KA + Q+ Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVMVE 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ ++L G + L DAL + Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLATSLDPAIINELYLYGPEMKNLYDALVDKYPAEN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 462 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 216/465 (46%), Gaps = 15/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + D++ A G + +N I +DSR + + F I G D H F+ +KGA Sbjct: 5 SVQDIVLATGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGA 64 Query: 66 GLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G V+ + + + S VDD AL + R R I+ +TGSVGKTTT+ Sbjct: 65 GAVLTSEHKEKTEEMAETSCAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTR 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ ALS+ Y G+ N+ +GVP+T++ + + + G+ ELGMS GE+ + + + Sbjct: 125 EMIAAALSARFHVYKTPGNSNSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAK 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I H+ E I K I +GL G + LN DD + ++ Sbjct: 185 PDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDD----MLCRTRGKV 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +G + D++ ++ GK+ +V+ + +G H N L + + Sbjct: 241 GVKTVYYGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNALAAIAVC 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ A + L FH K + G FT++D+SYNA+PASMKAA+ V + Sbjct: 301 CERGMTMEEAAEGLLTFHG----FKHRQQVYADGRFTVMDDSYNASPASMKAALDVFQGL 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RS 421 + IAVL DM E+G ++H ++ E + + V G +L + + + Sbjct: 357 TGKR---HIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVTLGEACRSLAEGVRAVKE 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I V + ++++ + DGD V+ K SNS G + + +E Sbjct: 414 IPVVEFSDCGEMVKYLEAEIRDGDCVLFKGSNSMGLSAVADQFVE 458 >gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 452 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I+ F +G + DGH F+ A+Q GA Sbjct: 5 TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++S P+ V+D L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQK-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + K G+YNN IG+PLT+ + D + I E+GMS EI FL++L +P Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + + + + + + + G H +N + + + Sbjct: 242 -CISIGVATDNALVCCVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T + L G R + T+I+++YNA+P SM+AAI LS ++ Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 GRRI +LGD+ E+GE S+ HI + L +I ++ G + D+ + + Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + + S L D V+VK S ++N L+ Sbjct: 411 QHFNSKDDMIGVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451 >gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 452 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 206/466 (44%), Gaps = 15/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I + G++IDSR++ PQ F KG H DGH F+ + Sbjct: 1 MIEV-TLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQS 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +Q GA T P+ V D L AL +LA A + +IA+TGS GKT Sbjct: 60 IQDGAAAAFYQTGQEIDSSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ L + K G+YNN IG+PLT+ + D D I E+GMS EI L+ Sbjct: 120 TTKDMIESVLKTQFKVKKTQGNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSS 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IAVIT I +H+ + IA AK+EI GL+ G + D+ + A+ Sbjct: 180 IAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + S G +N + ++ + + NM Sbjct: 240 HAKL---ISVGLEQNNTYVCTIDSNQNDGIAFNINNTEHYELPIL------GVHNMRNAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +++ + + G R + + T+I+++YNA+P SMKA+I L Sbjct: 291 IAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419 S + EGR+I +L D E+G+ SQ H ++ E L NI ++ G + P Sbjct: 351 SNM----EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQP 406 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H + E+ + + ++ LV GD V+VK S ++N ++ Sbjct: 407 YVSHAQHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVNAII 452 >gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] Length = 452 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 204/463 (44%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L ++G G ++ ++ D+R + P F A+KG +D HDF A GA Sbjct: 5 SLSQLAVILKGELHGADTD--IDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D A +LA R + A ++A+TGS GKT+ KEM Sbjct: 63 GALLVSRKL-----DIDLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L T G+ NN IGVP+TL R+ + + + ELG +H GEI + L RP Sbjct: 118 TAAILGECGNTLYTAGNLNNDIGVPMTLLRLTPEHQYAVIELGANHQGEIAWTVSLTRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL G LN D++ + ++ + Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPANGIAILNADNNDWLNWQSVIGDRKVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +DF S + ++ ++V+ G H N L + Sbjct: 238 R--FSPNLATSDFSATNIHITSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASALAMA 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A + L+ GR A N L+D+SYNAN SM AA VLS++ Sbjct: 296 VGAPLQAIKAGLAKLKAVPGRLFPVHLAEN---QLLLDDSYNANVGSMTAAAQVLSEMP- 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ +++ H + E I V G + A S Sbjct: 352 ---GYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRA---SGVGE 405 Query: 426 YSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466 + + +++ + + ++ +VK S S ++ L E Sbjct: 406 HFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQE 448 >gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coprococcus catus GD/7] Length = 456 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 203/466 (43%), Gaps = 19/466 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++ A G + G+ IDSR I P F A KG DGH FI Sbjct: 4 MTLENIAAACGGQIYYMREDLAQETAKGVVIDSRQIEPGYIFVATKGERVDGHRFIPDVF 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V+ +G P V+D AL + A R + ++ ITGSVGKT+ Sbjct: 64 AKGALAVICEVLPEEDLG----PCILVEDSFMALKQAAAFYRQQLNIRVVGITGSVGKTS 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE + L K + G+YNN +G+PLT+ + D + E+G++ GE+ L+ + Sbjct: 120 TKEFIAAVLVEKYKVHKTAGNYNNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEV 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP I V+T I HL N + I AK+EIF+ + GT+ +N DD + Sbjct: 180 ARPDICVMTNIGQCHLENLIDRDGILRAKSEIFDFMNPEGTVIVNGDDDKLATIHDVYGK 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I + + AD + S ++ + + G HM N + Sbjct: 240 APITFGMNKDNAIWADHIENRGLL---GSRADIHMGDVLVHANIPLPGEHMIYNAMAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + +S GR G +ID+ YNANP SMKAAI +L+ Sbjct: 297 VGVQFDMTKEEITAGISHVEAVAGRSHLIE----AGDKVVIDDCYNANPVSMKAAIDLLA 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420 GR++A+LGDM E+GE ++ H ++ + + I + G + + A + Sbjct: 353 TAP----GRKVAILGDMFELGENERAMHREVGQYAAEKGIDLILCVGGLSSEMYEGAAEK 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E + L +Q L GD V+VK+S+S F ++ + E Sbjct: 409 GGEARHFEIREALEAVLQDLLQPGDTVLVKASHSMAFENIVQNIQE 454 >gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] Length = 458 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 122/461 (26%), Positives = 205/461 (44%), Gaps = 16/461 (3%) Query: 5 WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +T ++ QA + + D+RS+ F A+KG +DGHDF+L AV Sbjct: 4 FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVA 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA VVV + +L +PVF V D L A LA R R +IA+TGSVGKT+T Sbjct: 64 KGAAGVVV-AAREETFAALPVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++M+ LS + + ++NN IG+P TL + + + + E+GM G+I L + Sbjct: 123 RQMIASVLSQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQIAELAAIA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I V+T + +H+ E IA AK E+ L TGT LN DD + Sbjct: 183 EPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAAMAKLCRGK 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I S G + + + + + + ++ +G H N L + Sbjct: 243 VIGYGTSVGAA----VRAGEIQTDDKGLSFICRCFDQTFRATVPVLGKHHVYNALAAVAT 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L K L+ + ++ G +T I+++YNANPASM + Sbjct: 299 ARLLGLSETQMCKGLAAYAGV----PMREELVHVGPYTFINDAYNANPASM---EEAVQT 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 ++ + ++IAVLG M E+G+ + H L + ++ +I+ + G + +A ++ Sbjct: 352 LAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPASYIAEAAEKAG 411 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V+ ++ L G VV++K S +++ Sbjct: 412 MKAVYQVSDHQAGAAVLRDLLEPGAVVLLKGSRGFTMEKIL 452 >gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 459 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 127/465 (27%), Positives = 218/465 (46%), Gaps = 10/465 (2%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P +T ++ +A + + I D+R I P F A KG ++G DF+ AV+ Sbjct: 2 PAFTLDEVREATGAQLYKMEHE-EFTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVE 60 Query: 63 KGAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V+V+T + + L V +D L A +LA A R+R ++AITGS GKTT Sbjct: 61 KGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK++ LS+ +YNN IG+PLTL + + + E+GM L +I + + Sbjct: 121 TKDLTAAVLSARGPVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEAMAPI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P + ++T + H+ IE IA AK+E+ E + GT+ LN D+ + ++++ A Sbjct: 181 AAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAMRSQ--A 238 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG K AD + ++ + N+ L Sbjct: 239 REGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHNVYNALA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ A T +A S + R+ + + +I+++YNA+P SMKAAI LS Sbjct: 299 AIAAGFALGLTPAEAASGLRNLKATKMRFE-VQDVKTYHVINDAYNASPMSMKAAIETLS 357 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ +GR+IAV+GDM E+G +S+ H ++ L+ + + V G + D Sbjct: 358 EL---TKGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVTRGQMGAFIADGAEEG 414 Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V +++ + ++ L GD ++ K S ++I+LL Sbjct: 415 GVPQVFRADSHEAAADYLHKILEPGDTILFKGSRGMQMEKIIDLL 459 >gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] Length = 458 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 125/461 (27%), Positives = 206/461 (44%), Gaps = 16/461 (3%) Query: 6 TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + G + V+G+S D+R+I + ++G ++GHDF+ A QKG Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKG 64 Query: 65 AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A V+ + G + V DD L AL +LA R + +I +TGS GKTTTK Sbjct: 65 AAAVLWAEREGTPPEGVPVVVV---DDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ + G+ NNHIGVPLTL + + + E+GMS GEI LT + + Sbjct: 122 DMIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAK 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AVIT I +HL E IA AK EI GL G + D+ K Sbjct: 182 PDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPKLPLPR 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG + D+ + + + ++ + ++ L + Sbjct: 242 --HVVTFGAGEQNDYYPTDVRIEAGGTSFV----INALPGRTLFMPVLGKHHVYNALAAI 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + R + FT+I+++YNA+P SM+AA+ +L ++ Sbjct: 296 AVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQEL 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPR 420 S + + IAVLGDM E+G+ +FH ++ EVL + +V+ G + A Sbjct: 356 SGYRQK--IAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAHHIAAAAAPFFD 413 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V + L ++S D+V++K+S L+ Sbjct: 414 DGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELL 454 >gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM] gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus acidophilus ATCC 4796] gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM] gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus acidophilus ATCC 4796] Length = 455 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 129/463 (27%), Positives = 208/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ + + + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 6 AEIAKALD-KTCEGDDKTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + I V VDD L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPEGIAVIEVDDPLAAMQTLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L RP +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTVLEMKPNTEILVLEMGMDRPGQLHHLSELTRPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG + +K + + + IG H N + + + Sbjct: 239 -TFGFEDDDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R ++ + YN+NP +++A I+ Q+ Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDVGEAIMSDIYNSNPTAVRAVITSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHV 424 GRRIAVLGDM E+GE S H +L++ L I+ V+L G + L DAL S H+ Sbjct: 353 GGRRIAVLGDMLELGENSPKLHAELSDTLDPQIINEVYLYGPEMKNLYDALQGKYESEHL 412 Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HY + MD + +++ + D+VV+K S+ ++ L Sbjct: 413 HYYTKDQMDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455 >gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 455 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 209/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ QA+ S + + ++ DSR I+ F IKG DGHDF+ A++ GA Sbjct: 5 LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I V V D L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWEAGH--PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ Y ++NN IGVP+T+ M + + E+GM G++ L+ L RP + Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F ++IA AK EI + L++ G N D+ L A+ A + Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLSQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + S+ ++ G E IG H N + + + Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + L+ F P R ++ + YN+NP ++KA + Q+ Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVL DM E+G S H LA L I+ ++L G + L AL ++ Sbjct: 352 EGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M L ++S + D+V++K S+ R+++ L Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455 >gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] Length = 452 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELKG--ADIALDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAGA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALAMSVGATRDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAIGVA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L +++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALIAHLKTLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] Length = 469 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 206/469 (43%), Gaps = 17/469 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++T ++ +A G IG Q V +S DSR +AP E F +KG +DGHDFI A Sbjct: 2 AMFTLQEIAEATGGRLIGEA-QAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAG 60 Query: 63 KGAGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +G + + + A V+D L AL LA R R ++A+TGS GKTT Sbjct: 61 RGVTAFLMAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML L+ G+ NN IG+PLTL R+ + + E+GMS GEI L + Sbjct: 121 TKEMLARILAQTGPGLKTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGEIDRLAEI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P + +IT PAHL +E +A AK E+F L++ N DD L + Sbjct: 181 ADPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDP----LVSSCPT 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T +FG E ++L +V G H N L Sbjct: 237 HLNVTRLTFGLRGAEVSSASIKSLGKEGESFTLRLPDGEEQVTLKAYGRHNIYNALAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L L F P + R + A TLID+SYNANPASM AA++ L Sbjct: 297 AAHALGVPGQVIRLGLEEFTPYDKRFQLEEVAG----VTLIDDSYNANPASMAAALATLK 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +++ G R AVLGDM E+G ++ H +L + + ++L G ++ + Sbjct: 353 EVA--GGARTAAVLGDMLELGLGTEEAHRELGGKAAAT-VERLYLLGGLATEVEKGALEA 409 Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ T + L + + L GD V+ K S ++ + E Sbjct: 410 GLSPERIVHAATHEELARELAAWLEPGDCVLFKGSRGMKMEKVATAVKE 458 >gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 455 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ QA+ S + + ++ DSR I+ F IKG DGHDF+ A++ GA Sbjct: 5 LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I V V D L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWEAGH--PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ Y ++NN IGVP+T+ M + + E+GM G++ L+ L RP + Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ ++IA AK EI + L++ G N D+ L A+ A + Sbjct: 181 AVITMIGEAHIEFLGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLSQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + S+ ++ G E IG H N + + + Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + L+ F P R ++ + YN+NP ++KA + Q+ Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVL DM E+G S H LA L I+ ++L G + L AL ++ Sbjct: 352 EGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M L ++S + D+V++K S+ R+++ L Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455 >gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 458 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 209/466 (44%), Gaps = 21/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + + A+ G IG ++ + D+R + F A+KG +D HDF A Sbjct: 1 MIPV-SLQAVALAVNGQLIG--ADTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V KGAG ++V+ + + P V D AL L R + A IIA+TGS GKT Sbjct: 58 VAKGAGALLVSKRL-----PIDAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G++NN IGVPLTL R+ + +F + ELG +H+GEI + + Sbjct: 113 SVKEMSAEILRQCGNVLYTAGNFNNDIGVPLTLLRLEPEHEFAVVELGANHVGEIAYTVN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P A++ +A AHL F + +A AK EIF+GL GT +N D + + + K Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEKIT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S ++ DF + + + E+ ++ V+ G H N L Sbjct: 233 HQRVWR-FSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A ++ + LS GR R ++D++YNAN SM AA VL Sbjct: 292 ALTMSVGATLENVRQGLSELKAVPGRLFPIRL---NAQQLILDDTYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R+ V+GDM E+G + H + I V G + + Sbjct: 349 GSMP----GYRVMVVGDMGELGTEEEDCHRQVGIAAREAGIDKVLSVGRLSHLISE---T 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLL 464 S + L +++ L + ++VK S S +++ L Sbjct: 402 SGCGEHFTDKTALIERLKNLLCEHAAITILVKGSRSAAMEQVVRGL 447 >gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 455 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 208/464 (44%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ QA+ S + + ++ DSR I+ F IKG DGHDF+ A++ GA Sbjct: 5 LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I V V D L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWEAGH--PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ Y ++NN IGVP+T+ M + + E+GM G++ L+ L RP + Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F ++IA AK EI + L++ G N D+ L A+ A + Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLSQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + S+ ++ G E IG H N + + + Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 L+ F P R ++ + YN+NP ++KA + Q+ Sbjct: 295 GESDGEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVL DM E+G S H LA L I+ ++L G + L AL ++ Sbjct: 352 EGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M L ++S + D+V++K S+ R+++ L Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455 >gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 455 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 211/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ QA+ S + + ++ DSR I+ F IKG DGHDF+ A++ GA Sbjct: 5 LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFIPIKGER-DGHDFVGSAIEAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + I V V D L A+ LA + T+++ITGS GKTTTK+M+ Sbjct: 63 ATLWEAGN--PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ Y ++NN IGVP+T+ M + + E+GM G++ L+ L RP + Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F ++IA AK EI + L++ G N D+ L A+ A + Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLPQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + S+ ++ G E IG H N + + + Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + L+ F P R ++ + YN+NP ++KA + Q+ Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 +GRRIAVL DM E+G S H LA L I+ ++L G + L AL ++ Sbjct: 352 EDGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M L ++S + D+V++K S+ R+++ L Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455 >gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus coahuilensis m4-4] Length = 456 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 209/466 (44%), Gaps = 18/466 (3%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + + + + V+G+ ID+R + F KG + DGH F+ ++KG Sbjct: 5 TIGQIATIVGALNDVSLFKDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG A +PV V+D L AL L+ A R ++ +TGS GKTTTK+ Sbjct: 65 AGAAFWEK--SAGPAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L LS+ + + G+YNNHIG+PLT+ +P D + + E+GMS GEIR LT + P Sbjct: 123 ILFALLSTKYRVHKTEGNYNNHIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A+IT I +HL + E I+ AK EI EGL+ G N D+ L + Sbjct: 183 DAAIITNIGESHLQDLGSREGISKAKFEIVEGLKSEGLFVYNGDEP----LLQERVKGYG 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG+ + K + E +G H N + + I Sbjct: 239 GSKETFGRHSSNTMYP--TKLAPSGFGTTFSVNVSDEEFHLPILGEHNVMNTMGAMLIAK 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K LS + G R + T+I+++YNA+P+S KAAI +L IS Sbjct: 297 FFGVGFGDMQKGLST---LKLTGMRLEVSTGAKGETIINDAYNASPSSTKAAIDLLQTIS 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 G+R V+ DM E+G ++FH ++ ++ +I V G + + Sbjct: 354 --TTGKRYFVVSDMLELGPNEEAFHHEVGTYVTD-DIDCVLTYGPLSSFIAEGAKETLPE 410 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + + L +++ + D V+VK+S ++ L +E Sbjct: 411 DRVIHFDEKSALIAYLKVVVKSDDTVLVKASRGMKMEEVVLALQKE 456 >gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli AA86] gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] Length = 452 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 214/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANNDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae Sd197] gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197] gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] Length = 452 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGGAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 466 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 223/471 (47%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P D+++A++ + ++ + DSR I P F +KG DGH +I Sbjct: 1 MKPTQ-IKDIVKAVEAIDFTSTARFTEIDSVEFDSRLITPGALFVPLKGA-TDGHSYIDK 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA + + D + + P+ V+D L A+ A A K ++ ITGS GK Sbjct: 59 AIENGAVAALWSND--PNEAPVGFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M ALS+ K + G+YNN IG+P T+ MP D + + E+GMS GEI FL+ Sbjct: 117 TTTKDMTAAALSTALKVHKTNGNYNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLS 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P + VIT I H+ E IA AK EI +GL++ GT D+ L+ + Sbjct: 177 KLAEPDVVVITMIGENHIEFLGSRENIAKAKLEILDGLKEEGTFIYPGDEP---LIVDQM 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ++ + G + + D + +++ G + QN L Sbjct: 234 PTDLKQSTLTIGLNDDHDIFAFD-VMMDQFQSTFYTNLSPELKMEIPLSGGYNVQNALYA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG+ ++ L+ F RG R L+ +++++YNA+P++MKA I Sbjct: 293 LGVAYSFGLSMEQVRPNLAEFSITPDRGSWERGILDTQ---ILNDTYNASPSAMKAVIRN 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418 S I+ G ++I VLGDM E+G S H ++A V+ L HV+L G + L DAL Sbjct: 350 FSAIASKGMSQKILVLGDMLELGAFSDELHREIATVIGLNTFKHVFLYGPRIQPLVDALI 409 Query: 419 PRSIH----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +H + + L +++ L D V+VK+SN G L+ L Sbjct: 410 EKGMHPDLITYIESDKEALIEQVKAILQPEDKVLVKASNGMGLIELVEALR 460 >gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E482] Length = 452 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQITDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] Length = 454 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 125/466 (26%), Positives = 203/466 (43%), Gaps = 16/466 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++L A + + G++ DSR++ P E F A+KG ++DGHD+ AV+ Sbjct: 1 MLKASEVLAATKA----VCADFEFTGVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVEL 56 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA VVV+ ++ + VF V+D L A +LA A R + + AITGS GKT+T Sbjct: 57 GAAGVVVSHEVSG--LPAGVAVFMVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTST 114 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++L LS G++NN IG+P TL + D D + E+GM LG+I L + Sbjct: 115 KDLLAACLSCKYNVVKTQGNFNNEIGLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIA 174 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +IT + H+ +E I AK+EI L + G LN D+ + K+ A Sbjct: 175 EPDSGLITNVGETHMELLGSMENIGKAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKAK 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + FG +N DF+ + + V I Sbjct: 235 VVY----FGLGENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAI 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V A+ A + + + G T I+++YNA+PASM+AA+ L++ Sbjct: 291 AGAFCYGVPMAVSAQA--LATARLTGSRQEIVYIGDITFINDAYNASPASMEAALKTLAE 348 Query: 363 IS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 HG+ R IAVL DM E+G++S+ H + + V G + D Sbjct: 349 AKKAAHGKARTIAVLADMLELGDISEDAHRRVGRWAVENGVDFVLTYGPQAAYIADEAAE 408 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++ GD++++K S+S +++ L Sbjct: 409 LGGKSKHCADRQEAADALRLMASAGDIILLKGSHSMQVDKMLELFK 454 >gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase [Clostridium sticklandii DSM 519] gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Clostridium sticklandii] Length = 457 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 131/471 (27%), Positives = 204/471 (43%), Gaps = 22/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + +L G + + + DSR I + + AIKG ++DG+DFI A Sbjct: 1 MIKL-TKNQILSWTSGENNFKDYNPKIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + A +++ N V V+D + AL +A ++ +A+TGS GKT Sbjct: 60 INNKASVILSNRQSSNKE------VITVEDTVIALGSIAKNYLMQFDIKKLAVTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+ML + T+ G+YNN IG+PLT + + IFE+GMS LGEI +L Sbjct: 114 TTKDMLYYVFNEHFSTHRTDGNYNNEIGLPLTALNIDKGYEAAIFEMGMSALGEIDYLAQ 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP+IA+IT I H+ E I AK EI L + +N DD + L + Sbjct: 174 IVRPNIAIITNIGSCHIEILKSQENIFKAKMEISNYLNNDDYLIVNGDDKYLTSLSENEY 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +G + + +K QS V G + IG H N L + Sbjct: 234 KFNLIK---YGFGEECQLRASDYKAVDGQSEFWVTGMGINRRFTLPAIGLHNVSNALSAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + L F P + R L + I++SYNANP SM+A I+ Sbjct: 291 AAGLIYKIPTEKIQAGLMKFQPSKLRM----QILEKNNIKYINDSYNANPESMEAVITSF 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 + GR+IA+LGDM E+GE S + H + + S V+ G + D Sbjct: 347 ESYAR---GRKIAILGDMLELGEFSVAAHERIGRLASE-KFDLVFFIGSQMKHAFDNFST 402 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + I+ + GD +++K S + + L ++ Sbjct: 403 DENTDKRKYHFIDNNIAIEEIKRIIKYGDTILLKGSRGMKLDEIFSALTDD 453 >gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Photorhabdus asymbiotica] Length = 459 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 216/474 (45%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M L T L Q G + ++ ++ D+R + F A+KG +D HDF Sbjct: 1 MISL-TLQQLAQVTDGVLNQVTERQAIDIYIRDVTTDNRKVENGSLFIALKGERFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 AV+ GAG ++V+ + +++ P V+D A+ KLA R +SKA ++A+TGS Sbjct: 60 SADAVKAGAGALLVSR-----VLAINCPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L T G+ NN IGVPLTL R+ +F + ELG SH+GEI Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLFRLTEQHEFAVVELGASHVGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +VRP A++ + AHL++F + IA AK EIF GL + GT +N + + + Sbjct: 175 YTVEMVRPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLPEKGTAIINVESNDWAYW- 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + +S ++ ADF + + + S E+ G H N Sbjct: 234 QQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVANA 293 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + LS GR A L+D++YNAN SM A Sbjct: 294 LAASALAISVGATLRDIRLGLSELRAVPGRLFPINLAEG---KLLLDDTYNANVGSMTVA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VLSQ+ G R+ V+GD+ +GE S+ +H + E + I V+ G + + + Sbjct: 351 VQVLSQMP----GYRVMVVGDIGALGEQSEDYHRQIGETAASCGIDRVFSVGKLSIHISE 406 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468 A S + L + L V V+VK S + +++ L E F Sbjct: 407 A---SGCGQHFADKAALIATLIPLLQQHKVISVLVKGSRNTAMEDVVHALQESF 457 >gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 57-2] Length = 452 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A + L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAES---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella boydii ATCC 9905] Length = 452 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G + A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHTISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] Length = 466 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 124/475 (26%), Positives = 205/475 (43%), Gaps = 17/475 (3%) Query: 4 LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + D+L G G P + DSR++ P + F A++G +DGHDF+ AV+ Sbjct: 1 MISLRDVLDGTAGMLRGSAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVR 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA +V + +L IP+ VDD L AL +LA R + A+TGSVGKT+T Sbjct: 61 RGAAGALVEARWAEELANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTHL 181 KE + L+ + S+N +G+ L L + + D + E LGE+R L L Sbjct: 121 KEAIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGEVRELCAL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P I V+T ++ AHL+ IE IA + AE+ E L G LN DD L+ ++ A Sbjct: 181 AEPRIGVVTNVSYAHLARMGTIERIAQSIAELPESLPADGVAVLNGDDFRVRLMAERTPA 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + S + + ++ G+ V +G H + L + Sbjct: 241 RVLLYGLS---PDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVHHALAAIA 297 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L ++ + R TL+D++YNA+PAS AA+S+L+ Sbjct: 298 VGYELGLTLEEMLPGFHDPR----VQVRLLTVPGINGATLLDDTYNASPASCMAALSLLA 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +I RIAV GDM E+G + H + + + ++ G + +A + Sbjct: 354 EIPAQR---RIAVFGDMYELGWYEEEGHRMVGRRAAAV-VDRLFTLGPRARWIAEAAIEA 409 Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 V ++ L ++ +L GD V++K + ++ L Q Sbjct: 410 GLAPERVWATDDRRELVAVLRETLRPGDFVLIKGARGMRMEEIVEALRAAQETEQ 464 >gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15] Length = 452 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 452 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 214/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G + + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTFDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri ATCC 33323] gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri ATCC 33323] gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] Length = 455 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 215/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S+ + + + DSR P F + G DGHDF+ +A+ GA Sbjct: 5 LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAE 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +PV V+D L AL LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWKKGHEGK--PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + Sbjct: 121 AAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + A + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQD 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++ + ++ + IG H N L + + Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEINDSEQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + +AL+ F P R + ++D+ YN+NP ++KA + Q+ Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVMVQ 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ ++L G + L DAL + Sbjct: 352 DGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAAN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 412 LHYYPQDEMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] Length = 474 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 180/470 (38%), Positives = 255/470 (54%), Gaps = 8/470 (1%) Query: 1 MNP--LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M LW+ L+ A++ G +P +GISID+R++AP + FFAIKG DGHDF+ Sbjct: 1 MKAESLWSGLGLVGALRARVSGGLP-RDASGISIDTRTLAPGDLFFAIKGEARDGHDFVA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A ++GA VV+ ++ P++ V DV +L +L AR RS A ++ +TGSVG Sbjct: 60 AAFERGAAGAVVDEAHAGALAGR-APLYVVKDVQESLERLGARARERSAAYVVGVTGSVG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM LS +A SYNN GVPL+LARMP FG+FE+GM+H GEI L Sbjct: 119 KTSTKEMAAAVLSRFGAAHASAASYNNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAAL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 LV PH+A++T +AP HL +F+ +E IA AK+EIF G+ G LN DD FE + Sbjct: 179 APLVEPHVALVTRVAPVHLEHFACLEAIADAKSEIFSGVVDGGVAILNRDDETFERMLEA 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A ++ FG S+ A +L + ++ + G H A N L Sbjct: 239 AAASRAAHVFGFGVSEGAQARLLSYDPRENSVEADIFGRRL--RYRIGAPGRHFALNSLA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L I +L D+ A AL+ F P +GRG+R + TLIDESYNANP SM+AA+ Sbjct: 297 VLTIAHVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTLIDESYNANPTSMRAALE 356 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L P GRR+AVLGDM E+G + H +LA L + ++ +G + L A Sbjct: 357 LLGAERPI--GRRVAVLGDMLELGPSAAELHAELASDLEAAGVDLLFTAGPLMARLYYAA 414 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P + + T L + SL GDVV++K SN R++ + +F Sbjct: 415 PERMRGAHRATARELEEAVLDSLGAGDVVMIKGSNGSRMTRIVEAIRTKF 464 >gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-3A-US] gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus 214-1] gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus crispatus CTV-05] gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-3A-US] gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus 214-1] gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus crispatus CTV-05] Length = 455 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 205/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ + Q + ++ DSR I F ++G DGH+FI A+ GA Sbjct: 6 AEIAKALN-TTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + I V VDD L A+ +LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTVNDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R +++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFTPTANR---MEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422 GRRIAVLGDM E+G+ S H LA+ + I+ V+L G + L DAL P + Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLADTMDPQIINEVYLYGSEMKNLYDALQGKYEPEHL 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H + E D + +++ + D+VV+K S+ ++ L Sbjct: 413 HYYTQEQTDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455 >gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 455 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S+ + + + DSR P F + G DGHDF+ +A+ GA Sbjct: 5 LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +PV V+D L AL LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + A + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++ + ++ G + + IG H N L + + Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + +AL+ F P R + ++D+ YN+NP +++A + Q+ Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVRAVTTSFGQVMVE 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ ++L G + L DAL + Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEEN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 5 str. 8401] gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401] gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 4343-70] gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-218] gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-272] gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-227] Length = 452 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya zeae Ech1591] gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae Ech1591] Length = 453 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 208/463 (44%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + +G ++ +S D+R + F A++G +D HD+ AV GA Sbjct: 5 SLRQLADVLGARLVGK--DLIISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ + + +P VDD AL +A R +S+A ++A+TGS GKT+ KEM Sbjct: 63 AALLVSKHL-----PIEVPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + D+ + ELG +H+GEI + T +VRP Sbjct: 118 TASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F +E +A AK EIF GL G +N D + + A Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAIINADSNDEARWQD-VLAGKTL 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + DF + + + + V G H N L + Sbjct: 237 WRFSPQECDGVDFYAGDIRISERGTDFVLHSPMGDIAVTLPLPGRHNIANALAATALALA 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A ++ L GR L+D+SYNAN SM AA+ VL+++ Sbjct: 297 VGASLEAVKVGLEQLQAVSGRLF---PIALAPGKLLLDDSYNANVGSMTAAVHVLAEMP- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ +Q+ H + E NI V G + + S Sbjct: 353 ---GYRVMVVGDMAELGQDAQACHRQVGEAACKANIDKVLSVGALSALIGE---TSGTGE 406 Query: 426 YSETMDGLFLFIQSSL-VDGDV-VVVKSSNSCGFYRLINLLLE 466 + + L +++ + + V++K S S ++++ L E Sbjct: 407 HFDNKTALIDRLRALVTQHNTITVLIKGSRSAAMEQVVHALQE 449 >gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] Length = 444 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 141/462 (30%), Positives = 223/462 (48%), Gaps = 18/462 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L ++G +G GIS+DSRSI P E F A++G YDGH ++ A Q G Sbjct: 1 MKLSTLASRLKGTLLG--ADAHYKGISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A VV + +P+ V+D AL +LA R + II +TGS GKTTT+E Sbjct: 59 AAAAVVEE-----VIETDLPLVLVEDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTRE 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L+ + A ++NN IG+PLTL + + + + E+G +H GEI +LTH+ +P Sbjct: 114 MIRSILAEMGPVLANFKNFNNAIGLPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQP 173 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I PAHL F I +A AKAEIF GL + G LN D+ ++L+ A Sbjct: 174 DIALITNIGPAHLQGFGSILRVAEAKAEIFSGLAQKGVAILNAADNHRDILEK---ASAQ 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++N DF R+ + +++ L S E + + +++ L + Sbjct: 231 YRRVNFGLTQNCDFYARQIQL--DKTGRPTFLLVSSGEEIIIRLNLSGQHHVMNALAAAA 288 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + S + R + TLID+SYNANP+S+ AA+ +L+ Sbjct: 289 VARQVGVEFSVIQSGLEKMQPLSGRVINRTTKTGATLIDDSYNANPSSVAAALKLLA--- 345 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 H +G RI VLGDM E+G+ + ++H + E+ I V+ G A H Sbjct: 346 -HYKGLRILVLGDMSELGKSAGAYHRQMGELAKALTIDKVYTCGDLSEETAKAF--GAHG 402 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L L ++ + +++K S + ++ L++ Sbjct: 403 KHYSNHQKLILALKPDVQKNVTILIKGSRNAQMEKVAAALMD 444 >gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrosococcus oceani ATCC 19707] gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] Length = 454 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 138/460 (30%), Positives = 208/460 (45%), Gaps = 19/460 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L A+QG G +G+S D+RS+ P F A++G +DGH FI A +KG Sbjct: 7 MSLRELTSAVQGRLQG--ANVAASGVSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ + +P V D AL +LA R R I+A+TGS GKTT KE Sbjct: 65 ASAALLEQAINDP-----LPQIEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L + A G+ NN IGVPLTL + F + E+G + GEI +L+ L RP Sbjct: 120 MIASVLGWREPVLATRGNLNNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT PAHL F ++ +A AK EIF+G+ G LN DD F + G Sbjct: 180 QVALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPCFSYWRD---LAGE 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + FG SK+A+ R + S + ++ G H N L Sbjct: 237 LPVIGFGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATI 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D +L+ GR + R L+D++YNANPAS +AA+ +L++ Sbjct: 297 ALGVDRQHLSASLAALSSVPGRLQIRRGIGG---MRLLDDTYNANPASFQAALELLAKFP 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R VLGD E+GE + S H + + ++ ++ G +A R Sbjct: 354 ----GERALVLGDFAELGEEAASLHRIMGKQARAAGVNRLYTLGRLGAFAAEAFGRG--A 407 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L +Q L ++VK S +++ +L Sbjct: 408 LHFLEQRSLLEVLQEELHPNITLLVKGSRCMRMEQIVAVL 447 >gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] Length = 455 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S+ + + + DSR P F + G DGHDF+ +A+ GA Sbjct: 5 LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +PV V+D L AL LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + A + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++ + ++ G + + IG H N L + + Sbjct: 237 KSTFGFREEDTVFATIFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + +AL+ F P R + ++D+ YN+NP +++A + Q+ Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVRAVTTSFGQVMVE 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ ++L G + L DAL + Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEEN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia sp. 4_1_40B] gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli H736] gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli] gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K12 substr. W3110] gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli DH1] gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Escherichia coli ETEC H10407] gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia coli DH1] gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1520] gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] Length = 452 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] Length = 457 Score = 264 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 200/468 (42%), Gaps = 22/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G V+G++IDSR + F AIKG DGHDFI ++ Sbjct: 4 MSLQEIATACGGTYFGDSTKLSLEVSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + D +G + V AL LA RL ++ ITGSVGKT+T Sbjct: 64 NGALCALSEKD----LGDVPYSYILVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L G++NN IG+PLT+ + + + + E+G++ E+ L + Sbjct: 120 KEMIASVLEQKYSVLKTEGNFNNEIGLPLTIFNIREEHEVAVLEMGINEFEEMHRLAKVA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT I HL N + + AK E+F+ + I LN DD ++ + Sbjct: 180 RPDICVITNIGFCHLENLIDRDGVLRAKTEMFDFMRDGAQIILNGDDDKLITVQ----NV 235 Query: 243 GIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 FG ++ D+ + + + L ++ H G HM N L Sbjct: 236 KGIIPVFFGLTERHDYYATDVHSLGLKGTSCILHLPNGTVNANIHLPGAHMVYNALAGAC 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L + K + P GR F +ID+ YNANP SMKA++ VL Sbjct: 296 VGYSLGLTNEEIQKGIESLLPVSGRNNLIE----TDDFLIIDDCYNANPVSMKASLDVL- 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419 + GR++A+LGDM E+GE ++ H + + + G + Sbjct: 351 ---SNALGRKVAILGDMGELGEDEKALHYGVGVYAAKKETDLICCIGTLAQEFVNGANSV 407 Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Y T + + S + GD ++VK+S+S F ++ L + Sbjct: 408 TSKSETLYFATKEEFLSQMHSIVKKGDTILVKASHSMEFPEIVEALQK 455 >gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola granulosus HTCC2516] gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola granulosus HTCC2516] Length = 480 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 179/474 (37%), Positives = 251/474 (52%), Gaps = 17/474 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LWT + +A G +G+SID+R++AP + F A+K DGH+F+ A++ Sbjct: 2 ALWTAAEAARATGGD---NRTDWTADGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALE 57 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA +V + P+ V DVL AL L AAR R+ A + AITGSVGKT++ Sbjct: 58 KGAAAALVTH--RPEGVAADAPLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTSS 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML AL +T+A SYNNH GVPLTLARMP D ++ I E+GM+H GEI L L Sbjct: 116 KEMLRAALERQGRTHAAEASYNNHWGVPLTLARMPADTEYAIVEIGMNHPGEIAPLARLA 175 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A++T +APAHL F IE IA KA IFEGLE GT +N D +L+A + A Sbjct: 176 RPHVAMVTIVAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEAA 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G + + SFG +L K + +L + + G H A N L L Sbjct: 236 GAEIV-SFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATEGAHFAVNALGCLAT 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAAIS 358 + L AD A+ L+ + P GRG R L+ G LID+++NANPAS+ AA+ Sbjct: 295 AAALGADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANPASLAAALE 354 Query: 359 VLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 VL+ P G+GRRIA+LGDM E+G + H +A+ ++ ++ V G + Sbjct: 355 VLAAARPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLVHCVGPLMR 414 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L ALP + E + L + GDVV+VK S R+++ + + Sbjct: 415 ELHRALPDGRRGRWVENAEDLAAKAARLVDPGDVVLVKGSKGSRVSRVVDAIRK 468 >gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Micromonospora sp. L5] gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora sp. L5] Length = 469 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 130/474 (27%), Positives = 205/474 (43%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A+ G +G P V G + DSR + F A G DGHD+ Sbjct: 1 MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 A+ GA V+ ++ +P+ V D L A+ +LA A R T+I +TGS G Sbjct: 60 AISAGAVAVLGTREVP------GVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + T A GS+NN +G P T + + + + E G +G +R+L Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AHL F +E IA AK E+ E L G LN DD + + ++ Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPDDGLAVLNADDPRVDAMASR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + +G+S++AD + + + S V G H N L Sbjct: 234 TRA----RVVRYGESEHADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + AL+ R T+ID+SYNANPAS A+ Sbjct: 290 AAAAVGRELGLPLPDLAAALNELGLVSTRRMD--VFERPDGVTVIDDSYNANPASTGVAL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + GEGR +AVLG M E+G+ H + + + + + + G + + Sbjct: 348 RALASMR--GEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVGEPAAPIHEG 405 Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++S L GDVV+VK S + + + L + Sbjct: 406 ATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALRAD 458 >gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] Length = 457 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 206/468 (44%), Gaps = 15/468 (3%) Query: 3 PLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 ++T +++ A + + I D+R+I F A++G +DGHDFI AV Sbjct: 2 AMFTDGEIVLATGARILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAV 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 G V+V+ D +F V + L A LA+ R R ++A+TGSVGKT+ Sbjct: 62 SLGTTAVIVD-DAGRLYPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTS 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+ ++ LS ++NN IG+P TL ++ + + E+GM LG+I+ L + Sbjct: 121 TRSLIATVLSQKYNVLQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGLGQIKELADI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P I V+T + +H+ IA AK E+ E L GT LN DD + K Sbjct: 181 AEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRVAAMAEKCKG 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + SFG +NA K + + + M+V +G H N L + Sbjct: 241 KTV----SFGIKENAPVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVYNALAAVA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +L K L+ + + ++ T I+++YNANPASM A+ L Sbjct: 297 VGRLLGMSEHQMQKGLAEYKGV----PMRQELIHLEDLTFINDAYNANPASMAEAVHTLM 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ GR+IAVLG M E+G+ +++ H + +L+ + G + D + Sbjct: 353 SVAS---GRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGDEATYIADGAEQK 409 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +V+ T ++ V GD +++K S +++ + Sbjct: 410 GMKNVYKVRTHKEGAEILRKIAVAGDTILLKGSRGFAMEKILPYFERK 457 >gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 453 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 129/463 (27%), Positives = 208/463 (44%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + IG + +S D+R + F A+KG +D HD+ AV+ GA Sbjct: 5 SLQQLATVLNAQLIGESID--IEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ + + +P V D L +L R +S A ++A+TGS GKT+ KEM Sbjct: 63 AALLVSKHL-----PIDVPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L G++NN IGVPLTL R+ + F + ELG +H+GEI + T LVRP Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL G +N D + F + + + Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIVNADSNDFPHWQVTLNHKTVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + + DF ++ + + +V+ G H N L + Sbjct: 238 R-FSPQAACDIDFFASDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLAMS 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A ++ LS GR L+D+SYNAN SM AA VL+++ Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLAEMP- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ + H + E + I V G + A S + Sbjct: 353 ---GYRVMVVGDMGELGDDAPECHRQVGEAARVAGIDRVLSVGTLSELIGTA---SGNGE 406 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + L ++ + + +V V+VK S S ++++ L E Sbjct: 407 HFQNKAALVSRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449 >gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia fergusonii ECD227] Length = 452 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 214/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G + Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHVIST---T 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITHLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] Length = 478 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 208/470 (44%), Positives = 271/470 (57%), Gaps = 3/470 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M LWT + +A+ +G +P+G V GISIDSR+IAP EA+FAIKG +DGH F+ Sbjct: 1 MTGQLWTIAAMAEAMSAERVGALPEG-VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ G G+ V+ A +P+ V DVL L LA A+R R+ A IIA+TGSVGK Sbjct: 60 ALKNGGGVAVIAQSHRAEFPD-DLPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE L L + KT+A S+NNH GVPL+LAR P F IFE+GM+H GEI L Sbjct: 119 TSTKEALRTVLQAQGKTHASAASFNNHWGVPLSLARCPSSARFAIFEIGMNHAGEIEPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LVRPH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+S F L+ K+ Sbjct: 179 KLVRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A G+ I +FG++ AD +L E S + L + G HMA N L Sbjct: 239 KASGVSRIVTFGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ AD+ + AL+ F P GRG R L G TLIDESYNANPASM AA++V Sbjct: 299 LAATTLAGADLALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPASMTAAMNV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q + GRRIAVLGDM E+G + H LA ++ I V+ G + AL DALP Sbjct: 359 LGQTAIGPRGRRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMRALWDALP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + Y+E L + + + GD ++VK S ++ L + FP Sbjct: 419 SAKKGGYAEDSAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFP 468 >gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 452 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 209/469 (44%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + Q G G + ++ D+R A F A+KG +D HDF+ A Sbjct: 1 MISV-TLQQVAQLTGGTLHGD--DRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G ++V+ + + +P V D AL +LA R +S A I+A+TGS GKT Sbjct: 58 ITAGCSALLVSKRL-----PVELPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G++NN IGVPLTL R+ + + + ELG +H GEI + + Sbjct: 113 SVKEMTAAILRECGETLYTTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 173 LVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQQALH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I + ++DF ++ + + ++V+ G H N L Sbjct: 233 AKTIWR--FSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNIANALAAS 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + LS GR + + L+D+SYNAN SM AA VL Sbjct: 291 ALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R+ ++GDM EMG + H + + I V +G + DA Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGSLSHGISDA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467 S + L L + +VK S S +++ +L E+ Sbjct: 401 SGVGEHFADKAALGARALELLAQHQHITLLVKGSRSASMEQVVQILQEK 449 >gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.] Length = 493 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 142/476 (29%), Positives = 226/476 (47%), Gaps = 19/476 (3%) Query: 1 MNPL--WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L WT ++++A G ++ + G+SIDSR+IA E F AIKG ++DGH F Sbjct: 1 MKQLIPWTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAFAE 60 Query: 59 HAVQKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 V++G +V+N + + + VD+ AL LA R R+ +++AI Sbjct: 61 AVVEQGIKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVVAI 120 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKT+TKEM +S T + G+ NN IG+PLTL ++ + + ELGM+H G Sbjct: 121 TGSNGKTSTKEMANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGMNHPG 180 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI L + +P I +IT I HL IE + +AK E+ +G++ GT LN DD Sbjct: 181 EIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADDERVM 240 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L K+ + + FG S+NA + + + ++L S+ V + G M Sbjct: 241 CLARKT----TRNVIYFGLSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMV 296 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + +L L F P +GR T+ID+SYNANP SM Sbjct: 297 SNALAAASVGYLLNLSAQEIKSGLENFAPVKGRMNITTLQNG---VTIIDDSYNANPDSM 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AAI L+ + G V GDM E+G S++ H + E+ + I ++ +G Sbjct: 354 EAAIKSLAGLKGKNRG--ALVAGDMLELGIYSETLHKKIGELCAECGIERLYATGQFSSD 411 Query: 414 LKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + I ++ + + + + L D +++K S + G +++ L E Sbjct: 412 IAAGAIIGGMDISSVFTGSQEDILSDMTEWLRPEDWILIKGSRAMGMEKIVVKLKE 467 >gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus 125-2-CHN] gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-1A-US] gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Lactobacillus crispatus ST1] gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus 125-2-CHN] gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-1A-US] gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus ST1] Length = 455 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 204/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ + Q + ++ DSR I F ++G DGH+FI A+ GA Sbjct: 6 AEIAKALN-TTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + I V VDD L A+ +LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTVNDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R +++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFTPTANR---MEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424 GRRIAVLGDM E+G+ S H L + L I+ V+L G + L DAL H+ Sbjct: 353 NGRRIAVLGDMLELGKNSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHL 412 Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HY E D + +++ + D+VV+K S+ ++ L Sbjct: 413 HYYTQEQTDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455 >gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 452 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 466 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 193/473 (40%), Gaps = 22/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + I P V+G + IDSR + F A G DGHD+ Sbjct: 1 MIAL-SLAEIASVVGGQTHDIPDPSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYAD 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV+ GA V+ + +P V+DV AL LA R AT++A+TGS G Sbjct: 60 QAVRAGAVAVLAQRP-------VGVPAIVVEDVQTALGALARHVVRRLGATLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + F + E+G +G I +L Sbjct: 113 KTSTKDLIAQVLRRKAPTVFTPGSLNNEIGLPLTALTATEETRFLVLEMGARGIGHISYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L G LN DD + ++ Sbjct: 173 TDLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPAEGAAILNADDPLVRAMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A I FG+S AD + + L S Y Sbjct: 233 TKAKVIL----FGESGEADVRAENVRLTDSGQ-PAFMLHTPSGASEVTMRLYGEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP S + Sbjct: 288 LAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTIVNDAYNANPES--MRAA 345 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414 + + + R AVLG M E+G+ + + H + + N+ + G L Sbjct: 346 LRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 405 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LL+ Sbjct: 406 AYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLD 458 >gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] Length = 463 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 206/473 (43%), Gaps = 27/473 (5%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G + ++IDSR + F AIKG DGH FI + Sbjct: 4 MSLKEIAAACGGTYHGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMD 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA + D +G ++ P V AL LA R ++ I+GSVGKT+T Sbjct: 64 QGAICSLSEQD----LGDVTYPYIQVASCTEALKDLAEHYRRSLDIKVVGISGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS G++NN IG+PLT+ + + + + E+G+SH G++ L + Sbjct: 120 KEMIASVLSEKYCVLKTEGNFNNEIGLPLTVFNLRKEHEVAVLEMGISHFGDMEPLAKIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + VIT I AHL N + I K +F+ + GT+ LN DD L+ + Sbjct: 180 RPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDD---KLRGYTSER 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI+ +Y + K + + S G HM N L + + Sbjct: 237 GIQPVYFGLDPACPFHAEQIQKMGLKGTVATFVTPSSSFSAHVSIPGDHMISNALAGVAV 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + I+ + P GR +T+ID+ YNANPASMK+++ VL+ Sbjct: 297 GYALGMKDEEIIRGIEKLVPIAGRNNLIE----AEHYTIIDDCYNANPASMKSSLDVLAF 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + R +A+LGDM E+G + H ++ IS + G + +A + Sbjct: 353 ----ADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLICIGTLSAEMANAARTAS 408 Query: 423 H----------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V++ +T + + + L + D V+VK+S+ F ++ L Sbjct: 409 EASSDSDTKTLVYHFDTKEAFYRQMDQLLKEQDTVLVKASHFMEFPEIVKRLQ 461 >gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] Length = 462 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 211/470 (44%), Gaps = 16/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T ++++ G +G + G+S DSR+I E F + GP++DGHDFI A Sbjct: 1 MKAL-TIKEVIKYTSGEYLGNQFNIQITGVSTDSRTINKGELFVPLTGPNFDGHDFIERA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +KGA ++ + + + + +L I + VD+ AL L+ R +AITGSVGK Sbjct: 60 FEKGAAAILCDKNKRSKVDNLPIKNIIFVDNPQSALLSLSAYYRRLFDIPFVAITGSVGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM L+ K G+ NN IG+PLT+ R+ G+ ELGMS LGEI + Sbjct: 120 TTTKEMTAEILNMRFKVLKTSGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRP IAVIT I AH+ + IA AK EI E L + LN D + Sbjct: 180 SVVRPKIAVITNIGIAHIEKLGSKQNIARAKMEILEPLGENDLAVLNGDCQELWDARKTI 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + FG+ + + + ++ M G H N L Sbjct: 240 ----VPKTVFFGQERGDIKARNIKSNSTNELEFDIYGCYGEMTFKALLPGIHNVNNALAA 295 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + + + + R + + +ID++YNANP SMK+A+ Sbjct: 296 IAVGFEMGLTKEEIQQGFLNLKLP---EMRLQFKKSYFGADIIDDAYNANPDSMKSALDF 352 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q S +R +LGDM E+G+LS+ H ++ + + G + + K Sbjct: 353 LQQYS--YGKKRAVILGDMLELGDLSEKAHFEIGKYAAER-ADIFIAVGNYAQSFKKGAL 409 Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++H T+ I+ + D D++++K+S ++ L+ Sbjct: 410 QGHLDSRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRGMKMEQITQTLV 459 >gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri VA-6] Length = 452 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 213/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIARTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S+ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEDCHVQVGEAAKAAGIDRVLSMGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] Length = 455 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S+ + + + DSR P F + G DGHDF+ +A+ GA Sbjct: 5 LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + +PV V+D L AL LA + T++ ITGS GKTTTK+M+ Sbjct: 63 ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LVRP + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + A + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++ + ++ G + + IG H N L + + Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + +AL+ F P R + ++D+ YN+NP ++KA + Q+ Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPIAVKAVTTSFGQVMVE 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421 GRRIAVLGDM E+G+ S H LA L I+ ++L G + L DAL + Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPAEN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K S+ ++++ L+ Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455 >gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] Length = 452 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 131/467 (28%), Positives = 201/467 (43%), Gaps = 19/467 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + A+ G G+S DSR++ P + F A+ G +DGH FI A++ Sbjct: 1 MMSTQEAALALHADWSGD--NAVFTGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIEN 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ D V D L +LA + R R ++A+TGS GKTT K Sbjct: 59 GAVTAMVSADTAILPTQPDFGWIKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVK 118 Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM+ G+ NN IGVP L ++ + E+GM+H GEI +L+ Sbjct: 119 EMIAAIFRCEFGLENVLATTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSR 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L P IAVIT AH+ E IA AK EIFEGLE+ G +N DD L + + Sbjct: 179 LAAPTIAVITNAGTAHIEYLGTTEAIARAKGEIFEGLEEQGVAIINADDPHARLWRQLAG 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G + + Q +QL ++E+ G H N L Sbjct: 239 NRPVVDFSMNGTAAVSARQP----AHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAA 294 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + L F GR + LID++YNANP SM+AA++VL Sbjct: 295 AAATAAGISTSSIAEGLHSFRGVPGR---LQKKTGLNRSVLIDDTYNANPDSMQAALNVL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G++I ++GDM E+G + +FH + + + + + G R Sbjct: 352 AEMP----GKKILIIGDMGELGADTATFHHRIGQQAASAGVDILLALGESSRQAVAGFGR 407 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLE 466 + +D L +S L + V V+VK S R+I L Sbjct: 408 G--AQHFADLDTLLEKAKSCLDEQHVFVLVKGSRFMQMERVIEQLQA 452 >gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 452 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ HI + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 459 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 211/467 (45%), Gaps = 20/467 (4%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ +A+ + V + DSR + P F IKG DGH FI A+Q GA Sbjct: 5 LSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D +P V+D L AL KLA + ++AITGS GKTTTK+M Sbjct: 64 VATLWAKDH-EDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L++ ++NN IGVP+T+ M + + + ELGM G++ FL+ LV+P Sbjct: 123 TAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I AH+ F + IA AK EI +GL++ G + D+ L A+ Sbjct: 183 IAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEP----LLAERAKAVDV 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG D ++ ++ L +EV IG + +N L + + Sbjct: 239 EQRTFGMKNENDVFASDVAGTDTETSFKINLD-PEVEVKLPIIGEYNVKNALAAITVGDR 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 V + +AL+ F R + ++ + YN+NP + KA ++ + Sbjct: 298 YHVGVADSARALADF---NLTKNRTEWLKGRQGERILSDVYNSNPTAAKAVLNSFAHT-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------- 418 GRR VLGDM E+GE + H LA+ L+ V+L G H+ AL L Sbjct: 353 KKTGRRFVVLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYP 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++H++ + + L +Q + D V++K+S+ +++ L Sbjct: 413 AEAVHLYDANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK 459 >gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 452 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ HI + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 452 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens DM4] gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens DM4] Length = 487 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 191/475 (40%), Positives = 267/475 (56%), Gaps = 10/475 (2%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MN PLWT L A G IG V G SID+RS+ P + FFAI+G DGHDF+ Sbjct: 1 MNDAPLWTPAALEAATGGRLIGTP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113 A++KGAG VV PV V D VL A+ +L +AAR R+ A IIA+ Sbjct: 59 AALEKGAGAAVVAEARAKEFEGAG-PVLAVPGEGEDPVLDAMRRLGLAARARTGAAIIAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT TKE L LS+ T+A + SYNNH GVPLTL RMP D FG+FE+GM+H Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGA 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L A + A + +FG+ + AD + + S ++ + G + G H+A Sbjct: 238 RLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQLGTPGRHVA 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + L AD+ A +L+ P GRG+R + G L+DESYNANPAS+ Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA++ L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ G + Sbjct: 358 RAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +ALP + + T +G+ + ++L GD V+VK SNS R++ + + Sbjct: 418 LFEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citreicella sp. SE45] gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citreicella sp. SE45] Length = 477 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 179/476 (37%), Positives = 250/476 (52%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT + A G G G+SID+R+IAP + F A+K DGHDF+ A Sbjct: 1 MT-LWTAQEAAAATGGQVAG---DWDATGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ G + VDDV L KL +AAR R +A ++A+TGSVGKT Sbjct: 56 LEKGAAAALVSH---VPEGVDPARLLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L + K +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 113 STKEMLRCVLGAQGKVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLSR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+A++T +APAHL+ F +E IA K IFEGLE GT +N D +L+ + Sbjct: 173 MARPHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMAQ 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I FG++ ++ + C + + + ++ G H A N + L Sbjct: 233 ARAAHVID-FGEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVPGRHFAVNGMGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAA 356 + L D A+ AL + P GRG R Q LID++YNANPAS+ A+ Sbjct: 292 AVAHALGLDRALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASLGAS 351 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P GRRIA +GDM E+GE + H LA S+ I V G Sbjct: 352 LEVLAAAEPRDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKIDVVHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ALP H++E + ++ L GDVV+VK S S R+++ + + Sbjct: 412 MRELWTALPYEKRGHWTEDSRAMAARVRHDLDAGDVVLVKGSLSMALSRVVDAIRK 467 >gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 155-74] Length = 452 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S + L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEAVRALQE 448 >gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 452 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRLVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 461 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 139/444 (31%), Positives = 205/444 (46%), Gaps = 19/444 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+SID+R++ P FFAI G +DGHDFI A KGA VVN SI + I Sbjct: 33 NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----SIDGVHI 88 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P F V L AL K+A A R IIA+TGS GKTT KEM+ L ++A G+ Sbjct: 89 PQFVVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 146 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIGVPL++ + + +FELG +H GEI +V+P +++I IAPAH+ F I Sbjct: 147 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 206 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + +A +K EI +GL TG +N DD++ I F AD + Sbjct: 207 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILR---FSSLHPADIYAQDI 263 Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + L +E+ G H +N L + + + L+ F Sbjct: 264 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 323 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR Q T+ID++YNAN S+ A+ VL GR+I V GDM E+G Sbjct: 324 VKGRMT---MLSGQNQSTVIDDTYNANLRSVLTALEVL----SGRPGRKIFVFGDMGELG 376 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + H ++ I + G H A + + + L +++ L Sbjct: 377 EWTTQHHREVGVAARQLGIDKLMSCGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLT 434 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L++ Sbjct: 435 PDTTVLVKGSRSSAMENVVHRLVQ 458 >gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 301] gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301] gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2002017] gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2747-71] gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-671] gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2930-71] gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-304] Length = 452 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] Length = 457 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 205/474 (43%), Gaps = 25/474 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M PL T L G ++ +S DSR I F A+KG +D HDF Sbjct: 1 MIPL-TLAQLAAVTAGRLFNAEGIDAATLTLSEVSTDSRQIGQDCLFIALKGERFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 V+ GA ++V ++ + P V + ++ +LA R +S+A ++ +TGS Sbjct: 60 APSVVENGAVALLVEREL-----DVDCPQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM LS KT G+ NN IGVPLTL R+ + D+ + E+G +H EI Sbjct: 115 SGKTSVKEMTASILSQRGKTLYTAGNLNNDIGVPLTLFRLTHEYDYAVIEMGANHPNEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T++V+P A++ + AHL+ F E +A AK EI++GL GT +N D Sbjct: 175 YTTNIVKPESALVNNLFAAHLAGFGSPEGVARAKGEIYQGLPDEGTAIVNLDSYSPHW-- 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + YS ADF + + + + + G H N+ Sbjct: 233 -QFQPRQTVWYYSLKPQDKADFYPSDIEVKQLSTNFTLHTPVGQIAITLPLPGMHNIANV 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A ++ L+ GR + + ++D++YNAN SM AA Sbjct: 292 LAASALAISVGATLEDIRNGLATTKAVPGRLYPVQLSPT---KVVLDDTYNANDGSMIAA 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I+VL+++ G RI + GDM E+G+ +Q H + + V G + Sbjct: 349 INVLAKMP----GYRILIAGDMGELGDYAQDCHQRVGIAAKDAGLDKVLSVGTLSEMISQ 404 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEF 468 H + L + + +VV +VK S S ++N L E F Sbjct: 405 FSECGEHFAF---KKDLLTRLIPLVQQNEVVSILVKGSRSSAMEDVVNALKECF 455 >gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 452 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 452 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] Length = 468 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 133/466 (28%), Positives = 214/466 (45%), Gaps = 16/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T+ ++ A G + +G GI+ D+R + + F A++G +DG DF A++ Sbjct: 4 MTWDEIRAATGGRLLLGKMRGTDAFAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALR 63 Query: 63 KGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 GA V+ V+ + +S V GV D L A ++A A R++ ++A+TGS G Sbjct: 64 AGAVAVMLPEPVSDAHRKELDRMSGAVIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNG 123 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKE+ ALS +YNN IG+PLTL M + + E+GM G+I L Sbjct: 124 KTTTKELTAAALSGRGAVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAAL 183 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P + ++T + H+ IE IA AKAE+ + G + LN DD+ ++A+ Sbjct: 184 AAIAAPTVGIVTNVGETHMELLGSIENIARAKAELVAAIAPGGIVILNADDARVVAMRAQ 243 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I ++G AD + + + ++ V G+ + +G H N L Sbjct: 244 --AADGVRILTYGIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALA 301 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L L LS P + R + G +T I+++YNA+PASM+AA+ Sbjct: 302 ALAAGFALGLSPQEMQAGLSRLAPPKMRY----EVHHVGAWTFINDAYNASPASMRAALE 357 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417 +++ P GRRIAVLGDM E+G S H + + + V G + + A Sbjct: 358 TTARLYP---GRRIAVLGDMLELGAASAEGHRSVGRTAAAEGFAVVITYGDEARRIYEAA 414 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 ++ T + ++ L DGD V+ K S ++ L Sbjct: 415 AAAGCLCRHAATHEEAANLLRGMLADGDTVLFKGSRGMRMEHIMEL 460 >gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 460 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 117/464 (25%), Positives = 209/464 (45%), Gaps = 20/464 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 10 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHEYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + Sbjct: 126 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +AVIT I +HL +EIA AK EI +GL + G N D+ L ++++ Sbjct: 186 QPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKT 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +F + D + ++ +V HG + + + Sbjct: 242 SSVNCKTFSEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV-- 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + K R++ + FT+I++++NA+P+SMKAAI L + Sbjct: 300 ---GQFYKVSTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQK 356 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 ++ + + I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + ++ Sbjct: 357 LNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAEFVAEEARKNY 414 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + + DVV++K S ++ Sbjct: 415 HIGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIVQK 458 >gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 3431] Length = 452 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSASMEEVVRALQE 448 >gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK966] gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. EDL933] gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. TW14359] gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1044] Length = 452 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIVWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFAEKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 438 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 133/443 (30%), Positives = 211/443 (47%), Gaps = 15/443 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +NG++IDSR+I+ F KG + DGH F+ A+Q GAG ++S Sbjct: 9 NQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQR-GTPIDENVSG 67 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 PV V+D L AL +LA A +IA+TGS GKTTTK+M+ L + K G+Y Sbjct: 68 PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNY 127 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLT+ + D + I E+GMS EI FL++L +P IAVIT I +H+ + Sbjct: 128 NNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSR 187 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA AK+EI GL+ GT + D+ + + S G + + Sbjct: 188 EGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK---CISIGVATDNALVCSVD 244 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + + + G H +N + + + L +T + L Sbjct: 245 DRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHELGLTYNTIYQNLKN---V 298 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 G R + T+I+++YNA+P SM+AAI LS ++ GRRI +LGD+ E+GE Sbjct: 299 SLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDVLELGE 354 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLV 442 S+ HI + L +I ++ G + D+ + + + + D + + S L Sbjct: 355 NSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLK 414 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 D ++VK S ++N L+ Sbjct: 415 AHDRILVKGSRGMKLEEVVNALI 437 >gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 452 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ HI + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] Length = 470 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 146/465 (31%), Positives = 226/465 (48%), Gaps = 22/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++Q +G + + V GISIDSR+ + FFAI+G +DGH F+ A+ +GA Sbjct: 8 TISQVIQ--RGATNPLQELAEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV V GS + VDDV AL + A R + A +I +TGSVGKTTT+ M Sbjct: 66 AACVVKRGEVTDPGSQ--LLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + ALSS ++NN GVPL++A + F + EL SH+GEIR L + P Sbjct: 124 IYTALSSCLTGIQSPANFNNEFGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQ 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I +HL +F +++IA K E+FE L TG + DD F + L +++ A + Sbjct: 184 IGVITAIGHSHLEHFGTLQQIAETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKV- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 G +N D Q +Q + V Q + + +G H L + + Sbjct: 243 ---RIGLGENNDLQAVSIEQDQQGISFRVNGQ----QYLLPVVGRHFVNAALAAIAVARE 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++L + GR + + G +T+ID++YNA+P SM+AA VL Sbjct: 296 LGISEQDVAESLRNYSTVPGRCHQMQ----IGDWTVIDDTYNASPDSMRAACQVLHDHV- 350 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422 G G+RI VLGDM E+G ++ +H +L ++ + ++ G ++ + Sbjct: 351 -GTGKRIMVLGDMLELGPETERYHRELGILVCQAGVDLLFACGKQATSVAQGARSAGMSH 409 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++ L + L GDVV+VK S RL+ L + Sbjct: 410 TKIITAADVELLAEDVTDLLEPGDVVLVKGSRGMRMERLLQHLQQ 454 >gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] Length = 469 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 143/469 (30%), Positives = 209/469 (44%), Gaps = 17/469 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++T +++ +A G IG G + +S DSR +AP E F A++G +DGHDFI+ AV Sbjct: 2 AMFTLNEIAEATGGRVIGEAA-GEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVS 60 Query: 63 KGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG + + A V D L AL LA R R + +TGS GKTT Sbjct: 61 KGVTIFLAEESWAAKHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML L+ G+ NN IG+PLT+ R+ + +FE+GMS GEI L + Sbjct: 121 TKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P + +IT PAHL +E +A AK E+F L+ N DD L + Sbjct: 181 AEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDP----LVSTCPT 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T +FG ++L +V G H N L Sbjct: 237 HLNVTRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L D + L F P + R + A TLID+SYNANPASM AA++ L Sbjct: 297 AAHALGVPGDLIRQGLEEFSPYDKRFQLEEVAG----VTLIDDSYNANPASMAAALTTLK 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ GEGR +AVLGDM E+G ++ H +L ++ + N+ ++L G V + Sbjct: 353 EL--QGEGRLVAVLGDMLELGLGTEEAHRELGKLAA-GNVDRLYLLGKLVEETAKGALEA 409 Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + D L + S + GD ++ K S ++ L+ + Sbjct: 410 GLPAADLVLGRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQ 458 >gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ED1a] gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ED1a] Length = 452 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris CGA009] gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Rhodopseudomonas palustris CGA009] Length = 479 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 199/469 (42%), Positives = 258/469 (55%), Gaps = 2/469 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A+ G +P V GISIDSR++AP +A+FAIKG +DGHDF+ A+ Sbjct: 5 PLWTSDAMAEAMAATRSGTLP-RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV A P+ VDDVL L +L +AAR R A +IA+TGSVGKT+T Sbjct: 64 AGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + T+A + S+NNH GVPL+LAR P D F +FE+GM+H GEI L +V Sbjct: 123 KEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPADTRFAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPHIA+ITT+ HL FSGIE IA AK+EIF GLE G LN D F+ L + + Sbjct: 183 RPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALRA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + I +FG AD +L ++ S + + G + G HMA N L L Sbjct: 243 SVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ A ALS P GRG R + G TLIDESYNANPASM AA+ VL + Sbjct: 303 AELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLGR 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G+GRRIAVLGDM E+G H L E + I V+ G + L DAL Sbjct: 363 AEVSGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 Y+ L + +++ GDVV+VK S ++ L + FP Sbjct: 423 RGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFPGT 471 >gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 452 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 214/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H G I + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGAIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 458 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 131/458 (28%), Positives = 199/458 (43%), Gaps = 23/458 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + + G +G +S D+R++ P F A+ G DGH+F+ AV KGA Sbjct: 6 ASTIARVTGGVLLG--EDREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAA 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VVV S+++ V D AL +LA+ R + +I ITGS GKTTTK+++ Sbjct: 64 GVVVERPF-----SINVTQIVVKDTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLV 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L A ++NN +GVPLTL + + GI E+GM LGEI L + RP I Sbjct: 119 KAVLRQKYNVCATEKNFNNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDI 178 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT I AHL E IA AK+E+ + L G +N + + + + A Sbjct: 179 GIITNIGEAHLELLKSQENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKKYFF 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G D ++K+ Q + + E G H A N L + L Sbjct: 239 GHRAG-----DLYIKKFSQEDDG-LRFITAGILEEEFFLPLFGVHNAVNALAAILTALTL 292 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 V K LS R G +I + YNA+P SM+AA+ VL+ Sbjct: 293 GVRVPLIKKGLSEVELTGMRL----EIQFIGSMKIIKDYYNASPTSMEAALKVLAGTGQK 348 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422 GR+IAVLG+M E+G+ + H + EV S + + G + + Sbjct: 349 --GRKIAVLGEMYELGDFETTGHRRVGEVASKLGVDFLITVGPKAREIGNGALAGGMSPQ 406 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 ++ + T + F+ + L D V++K+S F L Sbjct: 407 NIFHFATKEEAGSFLLNFLKPEDTVLLKASRGMKFEEL 444 >gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] Length = 469 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 130/474 (27%), Positives = 204/474 (43%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A+ G +G P V G + DSR + F A G DGHD+ Sbjct: 1 MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 A+ GA V+ ++ +P+ V D L A+ +LA A R T+I +TGS G Sbjct: 60 AISAGAVAVLGTREVS------GVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + T A GS+NN +G P T + + + + E G +G +R+L Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AHL F +E IA AK E+ E L G LN DD + + ++ Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPSDGLAVLNADDPRVDAMASR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + +G+S+ AD + + + S V G H N L Sbjct: 234 TRA----RVVRYGESERADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + AL+ R T+ID+SYNANPAS A+ Sbjct: 290 AAAAVGRELGLPLPDLAAALNELGLVSTRRMD--VFERPDGVTVIDDSYNANPASTGVAL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + GEGR +AVLG M E+G+ H + + + + + + G + + Sbjct: 348 RALASMR--GEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVGEPAAPIHEG 405 Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++S L GDVV+VK S + + + L + Sbjct: 406 ATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALRAD 458 >gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] Length = 455 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 152/467 (32%), Positives = 224/467 (47%), Gaps = 23/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + Q + +G G +S DSR I F A+KG +DGHDF A Sbjct: 1 MIPL-NLSGICQRLNARLVG--ADGEFRHVSSDSRVIPEHTLFVALKGEKFDGHDFANMA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA ++V+ ++ L+I V D A+ L R + +A+TGS GKT Sbjct: 58 VENGATALLVDHEL-----PLNIAQLIVKDTQKAMGDLGAYLRELIQPKSVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS K G++NN IGVPLTL R+ D +FG+FELG +H GEI + + Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHQGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F + +A AK+EIF L TGT +N DD F ++ + S Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLAGVACAKSEIFNHLAATGTAVINADDQFASVMLSASM 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMT 299 + T +FG AD Q + S + + ++ G H N L Sbjct: 233 S---FTQLTFGVESEADIQASDLEADSVGCYRFKLSYMQESVLIALPLSGRHQVSNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I +D LS+ P +GR + G +ID+SYNANPAS+ AAI Sbjct: 290 TAICLSFGLTLDEIKLGLSLLLPVKGRMLPTQ----LGRVRVIDDSYNANPASVTAAIDW 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I EG R VLGD+ E+G+ + H +L E++ + ++ G A Sbjct: 346 LQEI----EGHRCLVLGDLGELGDNASLLHTELGELIKQRGLDSLFTLGELSANASRAFG 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465 H+ ++ L I+ GDV V+VK S S R++ L+ Sbjct: 402 VDGHISLERLVEDLIKNIKQL--QGDVTVLVKGSRSAKMERVVEALI 446 >gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosomonas eutropha C91] gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosomonas eutropha C91] Length = 457 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 208/468 (44%), Gaps = 16/468 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + A+ +S G+S DSR++ P + F A+ G +DG FI A++K Sbjct: 1 MMSVQEAALALHANSNWSGGNPIFTGVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+TD V V+D +LA R ++A+TGS GKTT K Sbjct: 61 GAVAAMVSTDTVIVPTKSDFGWIKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVK 120 Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM+ + G+ NN IGVP L ++ + E+GM+H GEI +L+ Sbjct: 121 EMIAAIFRHEFGSGNVLATTGNLNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQ 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L P IAVIT AH+ + E IA AK EIF GL G +N DD++ +L + Sbjct: 181 LAAPTIAVITNAGTAHIEHLGTTEAIARAKGEIFTGLGAQGIAIINADDAYAQLWRQ--- 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + I FG + A + ++ SE + +QL +E+ G H N L Sbjct: 238 LAGSRQILDFGITNPAAIRAQQMSSSSE-AAWLLQLPDDKVEITLQVPGRHNIYNALAAA 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + L F GR + + LID++YNANP SM+AA++VL Sbjct: 297 AAATAAGISTTSIAEGLHNFMGTPGR---LQKKVGLYQSILIDDTYNANPDSMQAALNVL 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G++I ++GDM E+G + FH + + + I + G Sbjct: 354 AEMP----GKKILIMGDMGELGTDAAGFHYTIGQQAAKAGIDALLALGELSQQTVAGFGS 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 Y +D L + L V+VK S R+I L + + Sbjct: 410 G--AQYFADLDTLLEKAKDCLGKNVSVLVKGSRFMRMERVIEQLQDRY 455 >gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 452 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLSAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Edwardsiella tarda FL6-60] Length = 458 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 134/463 (28%), Positives = 203/463 (43%), Gaps = 21/463 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L AI IG V ++ D+R + P F A++G ++DGHDF A Sbjct: 1 MIA-TTLQTLADAIGATLIG--ADSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++VN + L +P V D AL +L R + A ++A+TGS GKT Sbjct: 58 REGGAGALLVNRRLA-----LDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G+ NN IGVPLTL R+ DF + ELG +H+GEI + Sbjct: 113 SVKEMSAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH A++ +A AHL F + +A AK EIF GL GT +N D + +E + Sbjct: 173 LTRPHSALVNNLAAAHLEGFGSLSGVAQAKGEIFAGLPPQGTAIVNADSNDWENWQHALT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S DF + + + + +V+ G H N L Sbjct: 233 EQRVWR-FSPQAGAGVDFYASAVRSDAAGTHFTLHTPAGQCDVLLPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L+ GR R L+D+SYNAN SM AA VL Sbjct: 292 ALTMSVGATLTQVQQGLAGLQAVPGRLFPIRL---GEHQLLLDDSYNANVGSMSAAAEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R+ V+GDM E+G +++ H + + I V G + +A Sbjct: 349 GHMP----GYRVMVVGDMAELGAEAEACHRRVGQAARAAGIDKVLSVGGLSRLIGEA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLI 461 S + L ++ L + ++VK S S +++ Sbjct: 402 SGCGEHFMDKTALIERLKHLLCEHAAITILVKGSRSAAMEQVV 444 >gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 452 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T ++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G + A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] Length = 467 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 222/475 (46%), Gaps = 19/475 (4%) Query: 1 MNPLWTFHDLLQAI-----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L ++L+A G + + ++ I IDSR P F AI G + DGH Sbjct: 1 MISLK-IKEVLEATRGQKSNGRLVIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHK 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 +I A G +V+ ++ + VD+ A+ +LA + + ++ ITG Sbjct: 60 YIKSAYDLGCRTFMVSQELDILDQLDGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGITG 119 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 SVGKTTT++M+ +S+ +T + NN GVPLT+ + + + E+GMS GEI Sbjct: 120 SVGKTTTRDMVYAVVSNKFRTLKNEKNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEI 179 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +L +VRP IAVI+ I +H+ + E I AK EI + + + +N DD + L Sbjct: 180 DYLADIVRPDIAVISNIGTSHIEHLGSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKL 239 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 +A+ A+ ++ SFGK L+ + ++ V+L+ K E +G H N Sbjct: 240 RAEKDAIS-YSLCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYN 298 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + + + L ++D + L F R + +N G + +I++ YNA+P SM Sbjct: 299 AMSAILVGLRLGMNIDEIRQGLMNFVATGDR----QNIINTGKYLVINDVYNASPDSM-- 352 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I+ L ++ + + R++A+LGD EMG+ + H + + + G + Sbjct: 353 -IASLKVLALNKDRRKVAILGDCLEMGDYEEEGHRRVGLQSVRRS-DVIITQGKAARFIG 410 Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++++ +T L +++ L D D ++VK+S F ++N L E Sbjct: 411 IEAQEHGFDLSNIYHFDTKKELIEDLKNILEDQDAILVKASRGMAFEDIVNYLKE 465 >gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] Length = 459 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 212/464 (45%), Gaps = 15/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + + G IG +++ I DSR + + F A+KG ++DG DF+ AV KGA Sbjct: 5 SIERIAKWTGGELIGDKTSCWISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V+ M G L++PV V D L AL +A+ R A IIAITGS GKT+TKEM Sbjct: 65 AAVIVDR-MQPGFGPLAVPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L KT G++NN IG+PL+L +M ++G+FELG +H GEI L+ ++ P Sbjct: 124 VGSVLRQKYKTVCTSGNFNNQIGLPLSLLQMDKTTEYGVFELGTNHPGEIATLSRIIAPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I ++T I AH+ +F +E IA K ++ + + + H Sbjct: 184 IVIVTNIGSAHVGHFGSVEAIAQEKTDL----LTFVSARGFAILGTDDFWSKRLHVRSAG 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G +N+ L + + + + EV + MA+N L + + Sbjct: 240 RVIWVGDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFL 299 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + L EGR + ++D+SYNANP SM +A+ L + Sbjct: 300 SSLSSEEITRGLEKTSFPEGRLTVHPIKNGF----VLDDSYNANPQSMLSALRALVEYPF 355 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-- 423 + I VLG M E+G+ +++ H ++ +SHV + G + + + L S Sbjct: 356 SSKK--IVVLGSMGELGDKARASHFEVGSFAGGLPLSHVIVVGPYGEDVYEGLRSSSFPI 413 Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + F + L V+VK S ++ LL Sbjct: 414 DCIFRTADTEEAFFCLHKLLNGNVTVLVKGSRFLKLDMIVKKLL 457 >gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 455 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 150/466 (32%), Positives = 237/466 (50%), Gaps = 16/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G IS D+R+I + F A+KG ++DGHDF+ A KG Sbjct: 4 WNTNNIIDATGGRGKSGCHNL---NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ D ++PV V D L AL+ +A A +IAITGSVGKTTT Sbjct: 61 AAAAVVSEDKY-----RNLPVIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+ML LS ++ G+ NN+IG+PLT+ + P + + I E+GM+ GEI+ L+ + Sbjct: 116 KDMLHTVLSQYGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSKIS 175 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P+IAVIT I P H+ NFS + +IA AK EI G++ GT+ LN D+ +++ L + Sbjct: 176 NPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLLSHVDRD 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + S + ++ K + + M G H ++L + + Sbjct: 236 VVSFGRSESATVCLLNVIKNDK---GLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAV 292 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L ++ AL F+ +GRG ++ N LID+SYNA+PASMKAAI L Sbjct: 293 IQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLGI 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 S + +A+LGDM E+G S +FH+ L + + Y++ V+ G +L L LP +I Sbjct: 353 YSNRRK---VALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVGKFMLKLHRLLPGNI 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + L + + + + DVV+VK S ++ + E+ Sbjct: 410 KGTHFNDSNQLKSNLANIVQNNDVVLVKGSRGVKMDFIVQGFIIEY 455 >gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Kitasatospora setae KM-6054] Length = 467 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 128/476 (26%), Positives = 202/476 (42%), Gaps = 22/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T + QA+ G G PQ + G + D+R I P F ++G DGHD+ Sbjct: 1 MIAL-TLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVG 118 AV GA V+ + +P VDDV+ AL +L + I+ +TGS G Sbjct: 60 AVADGAVAVLATRP-------VGVPAILVDDVVVALGRLARAVVARAADVRIVGLTGSSG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L+ +T GS NN IG PLT R+ + E+G H G+I +L Sbjct: 113 KTSTKDLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPSTRHLVMEMGARHKGDIEYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + P + ++ I AHL F E IA AK E+ E L G LN DD + ++ Sbjct: 173 TGITPPTVGLVLNIGTAHLGEFGSREGIAEAKGEMVEALSPEGVAVLNADDPLVRAMSSR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG+S +A + + + + L + Y Sbjct: 233 TRA----RVVLFGESPDAHVRATDVRLDATG-RPQFTLSTPAGSAPVRLRLYGEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + A ++ R T+++++YNANP SM+AA+ Sbjct: 288 LAAAAVAVELGMPVDRVAEALSEAGALSRWRMEVVDRADGLTVVNDAYNANPESMRAALR 347 Query: 359 VLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK 415 L+ ++ G R AVLG+M E+GE S H + + +I+ + G ++ Sbjct: 348 ALATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRLDITKLVAVGGREAARME 407 Query: 416 DALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 D ++S + GDVV+VK+S S G R+ LL + Sbjct: 408 LGARNEGSWGEESVLVSDADAAIELLRSQVRPGDVVLVKASRSVGLERVAEALLAD 463 >gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris TIE-1] gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodopseudomonas palustris TIE-1] Length = 479 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 200/469 (42%), Positives = 259/469 (55%), Gaps = 2/469 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A+ G +P V GISIDSR++AP +A+FAIKG +DGHDF+ A+ Sbjct: 5 PLWTSDAMAEAMAATRSGTLP-RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV A P+ VDDVL L +L +AAR R A +IA+TGSVGKT+T Sbjct: 64 AGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + T+A + S+NNH GVPL+LAR PVD F +FE+GM+H GEI L +V Sbjct: 123 KEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPVDSRFAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPHIA+ITT+ HL FSGIE IA AK+EIF GLE G LN D F+ L + + Sbjct: 183 RPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALRA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + I +FG AD +L ++ S + + G + G HMA N L L Sbjct: 243 NVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ A ALS P GRG R + G TLIDESYNANPASM AA+ VL + Sbjct: 303 AELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLGR 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G+GRRIAVLGDM E+G H L E + I V+ G + L DAL Sbjct: 363 AEISGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 Y+ L + +++ GDVV+VK S ++ L + FP Sbjct: 423 RGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFPGT 471 >gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium radiotolerans JCM 2831] gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium radiotolerans JCM 2831] Length = 482 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 256/473 (54%), Gaps = 8/473 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT +L A G G + ++G SID+R++ P + FFAI+G DGHDF+ A Sbjct: 1 MTALWTREELESATGGCLTG--AERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAITG 115 + + V + A + PV V D VL A+ +L AAR R+ A ++A+TG Sbjct: 59 LGR-GAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 SVGKT TKE L LS +T+A SYNNH GVPLTL RMP +G+FE+GM+H EI Sbjct: 118 SVGKTGTKEALRHVLSEQGETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEI 177 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 LT VRP IA+ITTIAPAH+ +F+ + IA AK EIF GL G LN D F+ L Sbjct: 178 VPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRL 237 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A + A + +FG+ +AD + K + S ++ + G+ + G H A N Sbjct: 238 AAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAALN 297 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + +V L AD+ A +L P GRG+R + G L+DESYNANP +++A Sbjct: 298 SLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVRA 357 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++ L+ I GRRIAVLGDM E+G + H LAE + + V+ +G + L Sbjct: 358 ALATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEAARVDLVFTAGPLMRNLF 417 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 +ALP S ++T L + +L GD V+VK SN R++ L + Sbjct: 418 EALPVSRRGAVADTAADLLEPLARTLRSGDAVMVKGSNGSRMGRIVEALKARY 470 >gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] Length = 461 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 190/465 (40%), Gaps = 16/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T LL+A+ G +G V+G+ DSR I P F + G +DGH +I A++ Sbjct: 5 TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + V + AL LA + R + + ITGSVGKTT K Sbjct: 65 GAAGCLTARVRTDYRE--DKFYIQVGNTERALRDLAAWYKDRFQIPFVGITGSVGKTTAK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS K G++NN+IG+PLTL R+ G+ E+GM GEI +L+ +VR Sbjct: 123 DMIAAVLSVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEIDYLSDIVR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242 P + VIT I AH+ E I AK E+ + K + LN DD L+ K+ Sbjct: 183 PEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKTPVQ 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + A + +V +G HM L+ + Sbjct: 243 AVFCGKAEDADYRAQVTGGDGVSHIH---CHITTPKMERDVKIPALGEHMIYPTLIAAAV 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D ++ F P R + T++D+SYNANP SM + +S Sbjct: 300 GEHFGLTPDEIEDGIARFVPTRMRMNVIQREGE---ITILDDSYNANPQSM---RAAISV 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ ++A+LGDM E+G + + H + + L I + G + + Sbjct: 354 LADTHSSWKVAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAVGKLSEHMAQGAREAG 413 Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V+ + + + + ++VK+S L LL Sbjct: 414 VPMVYSCADKEAAKVVLPQVVRPDSTILVKASRGMALEELTAQLL 458 >gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 459 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 209/467 (44%), Gaps = 20/467 (4%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ +A+ + V + DSR + P F IKG DGH FI A+Q GA Sbjct: 5 LSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D +P V+D L AL KLA + ++AITGS GKTTTK+M Sbjct: 64 VATLWAKDH-EDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L++ ++NN IGVP+T+ M + + + ELGM G++ FL+ LV+P Sbjct: 123 TAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I AH+ F + IA AK EI +GL++ G + D+ L A+ Sbjct: 183 IAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEP----LLAERAKAVDV 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 FG D ++ + L +EV IG + +N L + + Sbjct: 239 EQRMFGMKNENDVFASDVAGTDTETSFKTNLD-PEVEVKLPIIGEYNVKNALAAITVGDR 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 V + +AL+ F R + ++ + YN+NP + KA ++ + Sbjct: 298 YHVGVADSARALADF---NLTKNRTEWLKGRQGERILSDVYNSNPTAAKAVLNSFAHT-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------- 418 GRR VLGDM E+GE + H LA+ L+ V+L G H+ AL L Sbjct: 353 KKTGRRFVVLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYP 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++H++ + + L +Q + D V++K+S+ +++ L Sbjct: 413 AEAVHLYDANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK 459 >gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] Length = 473 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 208/479 (43%), Gaps = 22/479 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-----SIDSRSIAPQEAFFAIKGPHYDGHD 55 M L + +DL + G G + NG+ +IDSR I+ E FFA+KG H DGH Sbjct: 1 MAQL-SLNDLEEI--GTLFGQKERVA-NGVHHPVAAIDSRKISGGEIFFALKGEHTDGHA 56 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSK 107 F+ A + GA L VV+T+ + V D L AL KLA R + Sbjct: 57 FVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTENLFLSVQDPLVALQKLANRYRKKFP 116 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 I+ I GS GKTTTKEM L + + A G++NNHIGVPLTL R+ D + + E+ Sbjct: 117 IPIVTIAGSNGKTTTKEMTAAVLGTTFRVVATEGNFNNHIGVPLTLFRLRDDTEIAVVEM 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G++H GE+ L + P +IT I H EEIA A+ E++ L +TG Sbjct: 177 GINHHGEMNELCQIAEPTHGLITNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVN 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D A L + + ++ +++ + Sbjct: 237 ADDGLASQTAGELNLQTLYGIEQPNLGLNIWAKEVQLNQQGCASFKICTPKQALTLNLQI 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L I A +++ AL F PK G + R T++++SYN Sbjct: 297 SGRHNVYNALAAAAIGLNFGAKLESVKLALEHFVPKSGSKRMERICA--AGLTILNDSYN 354 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANP SM++A+ L+ + +G++I +LGDM E+G +S++ H L E + I + Sbjct: 355 ANPESMRSALGTLASL--ICDGKKIVLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGF 412 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G + P H T + ++ GD ++ K S ++ LL Sbjct: 413 GNAMKWTCQEAPNKCKGH-FNTKSEMVQALKEVAAPGDALLFKGSRGMKMEEVLEALLA 470 >gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Erwinia amylovora ATCC 49946] gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia amylovora ATCC 49946] gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 452 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 210/469 (44%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + Q G G + ++ D+R A F A+KG +D HDF+ A Sbjct: 1 MISV-TLQQVAQLTGGTLHGD--DRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G ++V+ + + +P V D AL +LA R +S A I+A+TGS GKT Sbjct: 58 ITAGCSALLVSKRL-----PVELPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G++NN IGVPLTL R+ + + + ELG +H GEI + + Sbjct: 113 SVKEMTAAILRECGETLYTTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 173 LVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQQALH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + ++DF ++ + + ++V+ G H N L Sbjct: 233 AKTVWR--FSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNIANALAAS 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + LS GR + + L+D+SYNAN SM AA VL Sbjct: 291 ALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R+ ++GDM EMG + H + + I V +G + DA Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGSLSHGISDA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467 S + L + L + +VK S S +++ +L E+ Sbjct: 401 SGVGEHFADKAALGVRALELLAQHQHITLLVKGSRSASMEQVVQILQEK 449 >gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] Length = 455 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 206/464 (44%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ S Q + +S DSRS+ F + DGH+F+ A Q GA Sbjct: 5 LSEVARALGIESEDQYDQITITSVSFDSRSLEQGALFVPLI-ASNDGHEFVEAAKQNGAC 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D IP+ VDD L AL K+ + ++AITGS GKTTTK+M+ Sbjct: 64 AALWQKDH--ENRPQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKDMI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ ++NNHIGVP+T+ M + + + E+GM H GE+ L HL+ P + Sbjct: 122 AAVLSTQFNVAKTHDNFNNHIGVPMTVLSMEPNTEILVVEIGMDHFGELDHLVHLLDPDV 181 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F + IA AK EI L++ G + N D+ L + Sbjct: 182 AVITMIGEAHIEFFKTRDRIADAKMEITHALKEDGLLVYNGDEP----LLIERAEKLDFE 237 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG N D Q + +E++ Q + IG + +N L L + S Sbjct: 238 TKTFGTGANVDLQAQNIVSDAEKTS-FRVKQWPELNFTIPMIGAYNVKNALAALCVGSEF 296 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D + +KAL F + R ++ + YN+NP + ++ Sbjct: 297 QIDPRSMVKALEHF---DLTRNRTEWVKASNGADILSDVYNSNPTACAEVLTAFQN--AE 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423 GRR AVLGDM E+GE H LA+ + + V+L G + L +AL Sbjct: 352 TTGRRYAVLGDMLELGEQGPKMHAGLADKIDPKKVDEVFLCGPLMKNLAEALTDKFDQGK 411 Query: 424 VHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H+ T + L ++ L D+V++K S+ ++ L Sbjct: 412 IHHYATGEKEQLVSDLKERLRSEDMVMLKGSHGIHLEDVLAELR 455 >gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-63q42] gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile ATCC 43255] Length = 457 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 137/464 (29%), Positives = 216/464 (46%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++T T+ +N DD F LK K HA + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHAYKL 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG +KN D + + + GK E+ IG H N + + + Sbjct: 244 ---KTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F + R + T+I++SYNA+P SM +I Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420 +GRR+A+LGD+ EMGE+S+ H + + S+ N + G + + + + Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 455 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 206/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ G Q + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 6 AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + +I V VDD L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R ++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424 GRRIAVLGDM E+G+ S + H L++ L I+ V+L G + L DAL H+ Sbjct: 353 GGRRIAVLGDMLELGKNSPALHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYKPEHL 412 Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HY + MD + +++ + D+VV+K S+ ++ L Sbjct: 413 HYYTKDQMDRMIDDLKNDIKSDDIVVLKGSHGMYLENVLARLR 455 >gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] Length = 478 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 170/472 (36%), Positives = 252/472 (53%), Gaps = 20/472 (4%) Query: 1 MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN LWT ++ A +G G V+GISIDSR +A + F A+K DGH+++ Sbjct: 1 MNKSLWTSKEIAAATKGEMTG---DWKVSGISIDSREVAKGDLFVALKDLR-DGHEYVSS 56 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++KGA ++++D +P VD+ L AL L +AAR RSKA AITGSVGK Sbjct: 57 AIEKGAAGALISSDCG------DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGK 110 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ KEM+ S K + + S+NNH GVPLTLARMP D IFE+GM+ GEI + Sbjct: 111 TSVKEMIAQIFRSKGKAHWNVKSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIAPRS 170 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238 +VRP IA++T IA AHL IE +A K++IF GLE G L +D FF+ +KA+ Sbjct: 171 RMVRPQIALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEPNGVAILPREDDFFDYMKARV 230 Query: 239 -SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G AD +L ++ S + G+++ + IG H N + Sbjct: 231 FDCQPTASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAV 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + A L + P GRG + G TL+D+SYNANP SM+A + Sbjct: 291 LAILVGRLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L GR+IA+LG+M E+G + H DL + + +S ++L+G +L L+D+ Sbjct: 351 AAL----GQRSGRKIAILGEMRELGPDADKLHADLKDPILKAGVSELFLAGDGLLPLRDS 406 Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + V ++ T L L + SL+ GDVV++K SN+ G + N L Sbjct: 407 CSNNENEPGVCWASTSKELVLMVNKSLISGDVVLIKGSNASGIASVANALKA 458 >gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] Length = 456 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 215/471 (45%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ +A +G G V+G+ IDSR + P F AI G + H FI Sbjct: 1 MKNL-SIENITKACRGTFHGDESILSQEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V+ GA VV + D +G P V+ AL +A R ++ ITGSVG Sbjct: 60 DTVKAGAMCVVSHED----LGETDFPYILVESTGQALLDIAKLYRDSFDMKVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM+ L+ + +G++NN G+P+T+ MP D + + E+G++H GE+R L Sbjct: 116 KTSTKEMIASVLAQKYHVHKTLGNFNNEWGLPITIFDMPEDTEVAVLEMGVNHFGEMRRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P I VIT I AHL F E I K+++ + ++ G+I LN DD L +K Sbjct: 176 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDD----LLSK 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T FG N F+ + + + L+ S + + Sbjct: 232 MSPVKGVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLKDGSSFDCLVPVPGIHMVSNA 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V IKA P + ++D+ YNANP SMKA+I Sbjct: 292 VAGAAVGYTLGLTADEIKAGIESLP---SIPGRNHIIETDHMIILDDCYNANPISMKASI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ GR++AVLG+M E+G+ +++ H ++ + N+ V G +L + Sbjct: 349 DVLNMAI----GRKVAVLGNMGELGDTAEALHAEVGTYAAEQNVDLVCGIGDLTRSLVEE 404 Query: 418 LPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + I + DGD V+VK+S+ F ++++ L E Sbjct: 405 ASKGANTEALWFADNESFIQAIPDIIKDGDNVLVKASHGMNFPQIVHALEE 455 >gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 451 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 205/470 (43%), Gaps = 27/470 (5%) Query: 4 LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T +L Q + IG G + +S D+R++ F A++G +D HDF AV Sbjct: 1 MMTLRLAELAQVLDARLIG--EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAV 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA ++V ++ L+IP V D L L +L R R ++AITGS GKTT Sbjct: 59 AAGASALLVEREL-----PLAIPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KEM T L A G++NN +GVPLTL R+ F + ELG +H GEI + T L Sbjct: 114 VKEMATAILRQEGDVLATAGNFNNEVGVPLTLLRLEPQHRFAVMELGANHPGEIAWTTSL 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P A+I +A AHL F +E + AK+EIFEGL + GT +N D+ F+ +A+ Sbjct: 174 AKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGLGEGGTAIVNADNEFWPKWQAR--- 230 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 GI +S + + + + + G H N L Sbjct: 231 -GIHCAFSIEDQRQPFHARNVVINQQGCAEFVMVTPQGEISLTLAIPGRHNVANALAAAA 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L A + + L + P +GR R TL+D++YNA+ S+ A I L+ Sbjct: 290 GTLALGASLASVKAGLELMAPVKGRFCVQRWGG----LTLVDDTYNASVESVLAGIDALT 345 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +S G ++ V GDM E+GE S H + S + V G DA Sbjct: 346 AMS----GYKVLVFGDMKELGEESAEQHARVGRHASERGLDAVLTVGEQSRHTADAAA-- 399 Query: 422 IHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFP 469 + + LF + + ++VK + ++ ++ + Sbjct: 400 --GRHFDNKASLFEVLAQMINTHQEIAILVKGARGSRMEDIVEMVKDRQE 447 >gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] Length = 456 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 128/460 (27%), Positives = 209/460 (45%), Gaps = 16/460 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L A G + + + ISIDSR++ + F + G D H FI A GA Sbjct: 6 VKDILSATGGRLLCGSEEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAA 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ + + P V+D AL + R R ++ ITGSVGKTTT+EM+ Sbjct: 66 AVLTSR---HDAMDSARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMV 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ALS+ Y G++N+ +GVP+T++ + + + G+ ELGMS GE+ + + + + Sbjct: 123 ACALSARYSVYKTPGNHNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQM 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I H+ + I K I +GL + G +FLN DD F + KAK Sbjct: 183 AVITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKE----GCR 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +G +N D++ K + V +G H N +++L + + Sbjct: 239 TIYYGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVRLAVMGSHNVLNAMVSLAVAAEC 298 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 ++ A K L F + + G T+ID++YNA+P SMKA + VL I+ Sbjct: 299 GIPMEKAAKCLEAFTG----FRNRQQIYQTGGITVIDDTYNASPVSMKAGLEVLGSITKA 354 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 IAVL DM E+G+ + S+H ++ E ++ + + + G + A+ Sbjct: 355 KRR--IAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVTLGELAGEIARAVKEHAPCIQ 412 Query: 427 SETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + L +++ L +GD V+ K SNS + Sbjct: 413 VKEFMEQDPLVSYLKEELKEGDCVLFKGSNSMMLGPVAEK 452 >gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 205/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ + + G + + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 6 AEIAKDLNTTCEGDD-KTVITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + +I V VD+ L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPENITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGHHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R ++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422 GRRIAVLGDM E+G+ S H L++ L I+ V+L G + L DAL P ++ Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENL 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H + + MD + +++ + D++V+K S+ ++ L Sbjct: 413 HYYTQDQMDHMINDLKNDIKPDDIIVLKGSHGMHLENVLARLR 455 >gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] Length = 456 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 210/472 (44%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T +L + G G ++ I+ DSR I F I G D H FI Sbjct: 1 MKNL-TLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + KGA + ++ + VD L A+ +A + + ++ ITGSVG Sbjct: 60 DVMTKGALATLSERELPEA----DYAYIQVDASLQAVKDIAEFYLEQLQIPVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L +T G++NN +G+PLT+ R+ + + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +P VIT I HL N + + AK EIF+ ++ G I LN DD ++ Sbjct: 176 TKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPNGHIVLNGDDDKLITVRE- 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 FG + D + + + + L + +V+ G HM N L Sbjct: 235 ---YNGVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDAFDVLVPTPGIHMVYNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + I ++ + + GR K F ++D+ YNANP SMKA++ Sbjct: 292 AAAAVGRIYGLTIEEIRRGIESLETIRGRFKMIE----TDKFLVVDDCYNANPMSMKASL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL GEGRR+A+LGDM E+GE + H + ++ I G + + +A Sbjct: 348 DVLHD----GEGRRVAILGDMGELGEDEAALHEGVGIHAAICGIDACVCVGDLAVHIAEA 403 Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ V+Y +T + L + + GD ++VK+S+ F ++ L E Sbjct: 404 ARKANPDFPVYYEKTRESLLEHLNDYVQKGDTILVKASHFMKFEEVVKALEE 455 >gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] Length = 469 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 219/473 (46%), Gaps = 17/473 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L +++QA QG + G + I IDSR P F AI G DGH F+ Sbjct: 1 MISL-RVEEVVQATQGQLVCQGMDGGEITNIVIDSRLAGPGAMFVAIVGESTDGHIFLES 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A Q+G +V+ + + + VD+ L +A R + ITGSVGK Sbjct: 60 AHQEGCRFFLVSNESYITDRFKDSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTT++M+ L+S T +YNN GVPLTL R+ + E+GMS GEI +L Sbjct: 120 TTTRDMVYSVLASKFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEIEYLA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++VRP I +IT I +H+ + E I AK EI G ++T ++ +N DDS+ + Sbjct: 180 NIVRPKIGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERY 239 Query: 240 HA--LGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 +YSFG D + + +++ + ++ E +G H +N Sbjct: 240 RNSQKDSYKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNA 299 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I ++ K L F E R + + FTLI++ YNA+P SM Sbjct: 300 MAAILAGHITGMTMEEISKGLLDFVATENR----QDIIKTDRFTLINDVYNASPDSM--- 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-K 415 I+ L + + + RR+A+LGD EMG+ ++ H + S+ + +G + Sbjct: 353 IAALKVLKLYKDRRRVAILGDCLEMGQYAEEGHRRVG-YQSIDKADIIITAGHAAKFIGV 411 Query: 416 DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +A+ R V + ET + L + + DGDV+++K+S F ++ +L Sbjct: 412 EAMERGFDLSRVFHFETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVLK 464 >gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] Length = 447 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 136/462 (29%), Positives = 215/462 (46%), Gaps = 21/462 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A G + VNG + D+R I P + + G DGHD+I A KGA Sbjct: 3 IREIIEATNGKLLSGHLDDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAA 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + N + + V V+D + AL LA R+ S A +I ITGS GKT+TK+M+ Sbjct: 62 ATLTNRPIEDDSHN----VILVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMI 117 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 +S T G++NN+IG+PLT+ R + + E+GM+HL EI +LT + P I Sbjct: 118 ASVISQQYTTLKTQGNFNNNIGLPLTILR-YNGEEVMVIEMGMNHLEEIDYLTKIALPDI 176 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A IT I AH+ E I AK EI G+ + N +D + + Sbjct: 177 AAITNIGTAHIGELGSRENILQAKMEIVHGMNHGTLVVNNDNDLLSTVHPE------GIS 230 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G +AD + + S V++ G+ V + G H N L+ + I +L Sbjct: 231 LKTIGIESDADLKATDIILNEDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQIGLLL 290 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 ++ I+ + F + R +ID +YNAN SMK++I VLS + Sbjct: 291 DIPMEKCIRGIETFELTKNRNDI---LTLDRHIRVIDGTYNANLDSMKSSIDVLSGYTDR 347 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-- 424 IAVLGDM E+G+ ++ H + L NI + G + D + ++ Sbjct: 348 K----IAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTVGPAARYISDEVNKAKPGIA 403 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ + L ++Q L + DVV+VK+SN +IN L E Sbjct: 404 YHFDDNASLSAYLQECLEENDVVLVKASNGMHLKEVINDLKE 445 >gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter segnis ATCC 33393] gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter segnis ATCC 33393] Length = 459 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 127/477 (26%), Positives = 203/477 (42%), Gaps = 29/477 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + ++ IG V +S DSR FFA+KG ++D HD+++ A Sbjct: 1 MITL-SLSQIASILEAQLIG-DGNVTVENVSTDSRKAVNNGLFFALKGENFDAHDYVMKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++G VV +I V D AL +LA R + ++A+TGS GKT Sbjct: 59 AEQGCVAAVVEHPTEG-----NIAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSGKT 113 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM G++NN IGVPLTL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTASILQQCAVDFDDVLFTQGNFNNDIGVPLTLLRLTEKHKFAVIELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T L +P +A++ + AHL F ++ +A+AK EIF GL G +N ++ + + Sbjct: 174 YTTALAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTHHGVAIINQAHNYQQKWQ 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + Y + ADF + + + + ++++ +G H N Sbjct: 234 KEI--GQHEVQYFSYDNPQADFYAEHIQFSEQGASFVLHTPQGNVQIDSPYLGEHNVSNA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + K L +GR L+D++YNAN SMK+A Sbjct: 292 LAATALAMNVGATLAQVKKGLETPSLVKGRLF---PIHPCDNLLLLDDTYNANVGSMKSA 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ISVL + R+ V+GDM E+G+ + H ++ E + V G + Sbjct: 349 ISVLQKYPA----FRVFVVGDMGELGDNTPLCHQEVGEFAWAAKLDLVISFGRSSSVISA 404 Query: 417 ALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + L ++ Q VV+VK S S +I+LL F Sbjct: 405 V----NFGRHFTDKTELVAYLTPIIKQQLTQQKVVVLVKGSRSMKMEDVIDLLKGNF 457 >gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] Length = 478 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 121/473 (25%), Positives = 192/473 (40%), Gaps = 16/473 (3%) Query: 2 NPLWTFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + D H G P + ++ DSR++ P + F A+ G +D HDF+ Sbjct: 5 TVMMRATDAAAWMTGAHLAG--PDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEV 62 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+V+ A++ ++ V V D L +LA R + ++A+TGS GKT Sbjct: 63 VARGAAAVLVSRAPAATLDVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKT 122 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM++ + A G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 123 TVKEMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAV 182 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P +A+I H +E +A A + L G D + Sbjct: 183 LAAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYAP 242 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A +A ++ +EVQ G+ + +G H A+N L Sbjct: 243 VWKAAAGSRRV-LDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNAL 301 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + +AL F P +GR + +ID++YNANP SM+AAI Sbjct: 302 AATACALAAGVAPEVIAQALGNFAPVKGR---LQRKQGTHGGLVIDDTYNANPDSMRAAI 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L + R VLGDM E+G +FH ++ I V +G DA Sbjct: 359 DALVTLPA----PRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDA 414 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ V+VK S R++ L+ + P Sbjct: 415 FGPG--AQHFASAEDLIEHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDPV 465 >gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2, 6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax paradoxus EPS] gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus EPS] Length = 479 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 209/468 (44%), Gaps = 12/468 (2%) Query: 1 MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T Q I G + P + + D+R++A + F A+KG +D +DF+ Sbjct: 4 MTPLNMTLAQAQQWIPGSRLVGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQ 63 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A +KGA + + + A+ + V D L AL L R + + +IA+TGS GK Sbjct: 64 AKEKGAIAAIAHHGLEAA----GLAGLEVPDSLVALGALGAGWRAQFELPLIAVTGSNGK 119 Query: 120 TTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 TT +M+ + A G++NN IGVPLTL R+ + ELGM+H GEI Sbjct: 120 TTVTQMIAAILVAFRADRALATAGNFNNEIGVPLTLLRLRARHQHAVLELGMNHPGEIAR 179 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ + RP IA++ H + +E +A A +F L GT Y D+F L Sbjct: 180 LSAISRPTIALVNNAQREHQEFMATVEAVAIENAAVFAVLPDDGTAVFPYGDTFTSLWTD 239 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +H G + +FG+ + AD L + + V+ + + H G H A N L Sbjct: 240 MAHDGGSRRCMTFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNAL 299 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAA 356 +D + LS F P +GR K N+ TL+D+SYNANP S+ AA Sbjct: 300 AATACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDSVIAA 359 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ + G + VLGDM E+G + FH ++ I V+ G Sbjct: 360 IDVLAGLP----GPHLLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYTLGTETAHTIA 415 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + + + L + + L V+VK S R++ + Sbjct: 416 AFQDADNGRHFNDYEALHAAVLARLPLVGSVLVKGSRFMKMERVVQAI 463 >gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 455 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 130/462 (28%), Positives = 203/462 (43%), Gaps = 17/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + + V+GISID+R+I + F +G +GH F+ A +KGA Sbjct: 4 TLKQLAAWLN-EDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + D IP+ VDD AL ++A A R KA I ITGS GKT+TK++ Sbjct: 63 GASLWQKD--EPNPPEGIPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTSTKDI 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L+ K IG++NN +G+P+T+ ++ D + + E+GMS GEI FLT L +PH Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPH 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + VIT I AH+ + IA AK EI +G++ G +F + D+ + L AK L Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQPDGLLFYDGDEPLLQELVAKEMHLNA- 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG N + S + + + TL + I Sbjct: 240 --VAFGLEPNNLLYADHIHANANGSSFTTHGMIEGDFFISV----LGKHQVKNTLVAMLI 293 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + R + I+++YNA P S+KAAI ++ + Sbjct: 294 SHQLGLKNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATSTI 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 E VLGDM E+G Q FH LAE + I +V L G + L + L + Sbjct: 354 RPEKW--LVLGDMLELGPDEQRFHEGLAEEIDEQEIDYVCLFGPRMTHLYEVLKERFGAE 411 Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + Y+E + ++ + +V++K S ++ Sbjct: 412 RLLYAEDDYTAIIEKLK-LANESSIVLLKGSRGMKLETILQA 452 >gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] Length = 458 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 134/463 (28%), Positives = 203/463 (43%), Gaps = 21/463 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L AI IG G V ++ D+R + P F A++G +DGHDF A Sbjct: 1 MIA-TTLQTLADAIGATLIG--ADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG ++VN + L +P V D AL +L R + A ++A+TGS GKT Sbjct: 58 LEGGAGALLVNRRLA-----LDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G+ NN IGVPLTL R+ DF + ELG +H+GEI + Sbjct: 113 SVKEMSAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH A++ +A AHL F + +A AK EIF GL GT +N D + +E + Sbjct: 173 LTRPHSALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIVNVDSNDWESWQHALT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S DF + + + + V+ G H N L Sbjct: 233 EQRVWR-FSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L+ GR R L+D+SYNAN SM AA VL Sbjct: 292 ALTMSVGASLTQVQQGLAGLQAVPGRLFPIRL---GEQQLLLDDSYNANVGSMSAAAEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R+ V+GDM E+G +++ H + + I V G + + Sbjct: 349 GNMP----GYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKVLSVGGLSRLIGEV--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLI 461 S + + L ++ L + ++VK S S +++ Sbjct: 402 SGCGEHFMDKEALLERLRHLLCEHAAITILVKGSRSAAMEQVV 444 >gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium populi BJ001] gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium populi BJ001] Length = 487 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 190/475 (40%), Positives = 271/475 (57%), Gaps = 10/475 (2%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+ PLWT L A G IG V G SID+RS+ P + FFAI+G DGHDF+ Sbjct: 1 MSDAPLWTPAALESATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113 A++KGAG VV + PV V D VL A+ +L +AAR R+ A I+A+ Sbjct: 59 AALEKGAGAAVVAAARANEFEGVG-PVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT TKE L LS+ T+A + SYNNH GVPLTLARMP FG+FE+GM+H Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNHGA 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L A +HA + +FG+ AD + + + S ++ + G + G H+A Sbjct: 238 RLLAHAHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVA 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + L AD+ A +L+ P GRG+R + G LIDESYNANPAS+ Sbjct: 298 MNSLGVLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASI 357 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA++ L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ + I V+ G + Sbjct: 358 RAALATLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVVFAVGPLMAH 417 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +ALP ++ + + +G+ + ++L GD V+VK SNS R++ + + Sbjct: 418 LFEALPMAVRGTAAPSAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 460 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++++AI Q VNG+ D+R + P + F + G H DGHDFI +A+ Sbjct: 3 MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFIENAI 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA + +D + ++IP VDD L A KL+ + +IA+TGS GKTT Sbjct: 62 KGGAVATLWASDHTDRL-PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M+ LS ++NN IGVP T+ +M + DF + E+GM G++ FL+ L Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A+IT I AH+ F ++IA AK EI GL+ G + D+ L + Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP----LLIERAK 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG+S D K + EV L +V +G + N L + Sbjct: 237 QVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + I+ LS F + R ++ + YN+NP + + ++ S Sbjct: 296 VGKLFQIPQIEIIQKLSHF---DLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418 Q GRRI VLGDM E+G+ S H LA + I+ V+L G + AL + L Sbjct: 353 QTDVM--GRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P ++H + ++ +D L ++ + D V++K+S+ ++ L Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA 460 >gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 451 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 204/466 (43%), Gaps = 16/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I + + G++IDSR + + F KG + DGH F+ A Sbjct: 1 MIEV-SLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG S+ P+ VDD L AL +LA A +I +TGS GKT Sbjct: 60 LKSGAGASFYEK-GQDISDSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ L + + G+YNN IG+PLT+ ++ D + I E+GMS EI L+ Sbjct: 119 TTKDMIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSK 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IAVIT I +H+ + E IA AK+EI GL+ GT + D+ LLK Sbjct: 179 IAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEP---LLKPHVE 235 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + S G + + ++ + + + NM Sbjct: 236 NVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYELPIL------GIHNMKNAT 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++I + G R + T+I+++YNA+P SMKAAI L Sbjct: 290 IAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + GR+I VL D E+GE SQ H D+ L I + G + + Sbjct: 350 SHM----NGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGNDAKFISRTGGQ 405 Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V Y + L +++S L D V++K S ++N L+ Sbjct: 406 FVEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451 >gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] Length = 454 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 117/464 (25%), Positives = 199/464 (42%), Gaps = 21/464 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + Q ++G I GIS DSR + P F A+KG ++D H F+ K Sbjct: 4 TLSQIRQWVRGSRI--TADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKV 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V + +P V D A+ ++A R R ++ +TGS GKTT KEM Sbjct: 62 AAVLVER----VPENYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEM 117 Query: 126 LTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + G++NN +GVPLT+ R+ + ELGM+H+GE+ +L + + Sbjct: 118 IASIFRTAWGENCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQ 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++ H +E +A + L + G DD++ L G Sbjct: 178 PTVGLVNNAQREHQEFMQSVEAVARENGTVIRMLPENGIAVFPADDAYSSLWA---GYAG 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG SK+AD ++ ++ + + L G+ +E+ G H +N + Sbjct: 235 GRQTMTFGFSKDAD-VSAAYRIEKGKTRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACC 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + L F P GR LID++YNANP S++AAI VL+ + Sbjct: 294 LAAGIGKLEIAEGLEKFVPVRGR---LERKTAFNGALLIDDTYNANPDSVRAAIDVLADM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G I VLGDM E+GE + FH ++ I+H + G +A Sbjct: 351 PSDG----IFVLGDMGEVGEEGERFHAEVGAYARERRINHFFTFGEMARFASEAY--GKE 404 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ + +++ + ++VK S R++ L+ + Sbjct: 405 ARHFMDLEEMNGVLKALVKPDMAILVKGSRFMRMERVVEQLMND 448 >gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] Length = 453 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 207/469 (44%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + + L G G V + D+R + F A+ G +D HDF+ A Sbjct: 1 MIPI-SLNTLATVSGGKLYG--SDITVGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ + ++ + + D A +L R ++KA ++A+TGS GKT Sbjct: 58 IASGAQALLVSKHLPVAVPQVVV-----ADTRIAFGQLGAWVRQQAKARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN GVP+TL R+ D D+ + ELG +H GEI + T Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDFGVPMTLLRLTKDHDYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + Sbjct: 173 LTRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFAGLPAHGTAIINADSNDLANWQPQLV 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S +F + ++ + + + + G H N L Sbjct: 233 GKTLWR-FSPQPQAEVEFGASDIQLRADATSFTLHTPRGDIAITLPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ P GR R A LID+SYNAN SM AA VL Sbjct: 292 ALALSVDAPLSAIQAGLTKLQPVPGRLFPVRLA---EHQLLIDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R+ V+GDM E+G+ +++ H + E I V +G + D Sbjct: 349 GDMP----GYRVMVVGDMAELGDEAEACHRQVGEAAKAAGIDCVLSTGSLSQLISD---N 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + + L +++ L + +++K S S +++ L E+ Sbjct: 402 SGNGEHFANKAALIERLRTLLSEHQEITILIKGSRSAAMEQVVQSLQEK 450 >gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 156/467 (33%), Positives = 241/467 (51%), Gaps = 15/467 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G G+ + + IS D+RSI + F A+KG +DGHDF+ A KG Sbjct: 4 WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ D + P+ V D L AL+ +A A +I ITGSVGKTTT Sbjct: 64 AVAAVVSEDKY-----RNFPLIIVQDTLKALHNMASYYIRNILVNAKVITITGSVGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+ML L ++ G+ NN+IG+P T+ + P D + I E+GMS GEI+ L+ + Sbjct: 119 KDMLNTVLLHYGVSHVNEGNLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKIS 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IAVIT I PAH+ NFS + +IA AK EI G++ GT+ LN D+ ++ L + Sbjct: 179 NPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSN---- 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLG 301 + + SFGK+++A L + + ++++L + M G H A + L+ Sbjct: 235 ANRNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVTA 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L D+ AL F EGRG ++ N LI++SYNANP SMKAAI L Sbjct: 295 VLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLG 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 S + +A+LGDM +G S FH +L + + N++ V G +L L LP + Sbjct: 355 TYSNLRK---VALLGDMLGLGNESIVFHTELLDSIVEQNVNKVHTVGKFMLELNKLLPEN 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 I + + + L + + + DV++VK S+ ++ E+ Sbjct: 412 IKGMHFDDSNQLKSNLANIVQGNDVILVKGSHGMRMDLVVQEFTIEY 458 >gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] Length = 460 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++++AI Q VNG+ D+R + P + F + G H DGHDFI +A+ Sbjct: 3 MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAI 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA + +D + ++IP VDD L A KL+ + +IA+TGS GKTT Sbjct: 62 KGGAVATLWASDHTDRL-PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M+ LS ++NN IGVP T+ +M + DF + E+GM G++ FL+ L Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A+IT I AH+ F ++IA AK EI GL+ G + D+ L + Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP----LLIERAK 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG+S D K + EV L +V +G + N L + Sbjct: 237 QVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + I+ LS F + R ++ + YN+NP + + ++ S Sbjct: 296 VGKLFQIPQIEIIQKLSHF---DLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418 Q GRRI VLGDM E+G+ S H LA + I+ V+L G + AL + L Sbjct: 353 QTDVM--GRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P ++H + ++ +D L ++ + D V++K+S+ ++ L Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA 460 >gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens AM1] gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens AM1] Length = 487 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 189/475 (39%), Positives = 265/475 (55%), Gaps = 10/475 (2%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+ PLWT L A G IG V G SID+RS+ P + FFAI+G DGHDF+ Sbjct: 1 MSDAPLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113 A++KGAG VV PV V D VL A+ +L +AAR R+ A I+A+ Sbjct: 59 AALEKGAGAAVVAEARAKEFEGAG-PVLAVPGEGDDPVLDAMRRLGLAARARTGAAIVAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT TKE L LS+ T+A + SYNNH GVPLTL RM D FG+FE+GM+H Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMLEDTRFGVFEIGMNHGA 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L A + A + +FG+ AD + + S ++ + G + G H+A Sbjct: 238 RLLAHAQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVA 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + L AD+ A +L+ P GRG+R + G L+DESYNANPAS+ Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA+S L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ G + Sbjct: 358 RAALSTLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +ALP + + T +G+ + ++L GD V+VK SNS R++ + + Sbjct: 418 LFEALPMPVRGTAAPTAEGVTDAVLATLRSGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 477 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 131/486 (26%), Positives = 205/486 (42%), Gaps = 36/486 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L+A+ G I + + +IDSR + P F A+ G DGH F+ A Q Sbjct: 1 MLTLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQN 60 Query: 64 GAGLVVVNTDMVASIGSLSIP--------------------VFGVDDVLGALNKLAVAAR 103 GA L +V D+ +L + V++ L AL +LA R Sbjct: 61 GAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWR 120 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 R +I ITGSVGK+TTKE++ LS +T G+ NN IG+PLTL R+ + Sbjct: 121 RRLNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERA 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+G GEI L + +P + VIT I H E IA K+E+ + L G Sbjct: 181 VLEMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGGYA 240 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LN+DD + + K+ A + + AD E + + +S V Sbjct: 241 ILNHDDPWVRWMADKTQAQILYYGLTPEAHLWAD---EIETMGLEGIRFRLHYRRESFSV 297 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG+H Q L + + I L R + ++D Sbjct: 298 RVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR----SPTQLRLVAVRSSSGALILD 353 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++YNA+P S A++ +L ++ GRRIAVLGDM E+G QS H + + Sbjct: 354 DTYNASPESTLASLQILHEMK----GRRIAVLGDMLELGPYEQSGHEKVGVRAAEV-ADV 408 Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + G + A + + + ++ L +GDVV++K S+ R Sbjct: 409 LVAVGELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGDVVLIKGSHGLRMDR 468 Query: 460 LINLLL 465 +++ L Sbjct: 469 IVSALE 474 >gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 452 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSCPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRLVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G A+ A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 S + L + + L + ++VK S S +++ L E+ Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449 >gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 455 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 127/462 (27%), Positives = 203/462 (43%), Gaps = 17/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + + V+GISID+R+I + F +G H +GH ++ A +KGA Sbjct: 4 TLKQLAAWLN-EDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + D IP+ VDD AL ++A A RL KA I ITGS GKT+TK++ Sbjct: 63 GASLWQKD--EPNPPDGIPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDI 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L+ K IG++NN +G+P+T+ ++ D + + E+GMS GEI FLT L +PH Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPH 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + VIT I AH+ + IA AK EI +G++ G +F + D+ + L AK + Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQPEGLLFYDGDEPLLQELVAKEQHINA- 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG + + S + + + TL + I Sbjct: 240 --VAFGLEPDNLLYADHIHANANGSSFTTHGMIEGDFFISV----LGKHQVKNTLIAMLI 293 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + R + I+++YNA P S+KAAI ++ + Sbjct: 294 SNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATSTI 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV- 424 E VLGDM E+G Q FH LAE ++ I +V L G + L + L Sbjct: 354 RPEKW--LVLGDMLELGPDEQRFHEGLAEYINEQEIDYVCLFGARMTHLYEVLKEDFEAD 411 Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + + + + +V++K S +++ Sbjct: 412 RLLYTEDDYTAIIEKL-ELANESSIVLLKGSRGMKLEKILQA 452 >gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 460 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 124/460 (26%), Positives = 212/460 (46%), Gaps = 20/460 (4%) Query: 7 FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKG 64 + L + + G + + GI IDS+ I F I DGHD++ A+ G Sbjct: 12 LNKLEEVVDGEGLQESFHNIEIQGICIDSKKIKKGNLFVPII--RVKDGHDYVKEAMDNG 69 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + IP+ VDD L AL +LA R +I ITGS GKTT K+ Sbjct: 70 AVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKD 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS+ + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P Sbjct: 128 IINTILSTTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSKIAQP 187 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I +HL EEIA AK EI +GL+ G N D+ L K+ L Sbjct: 188 DVAIITMIGQSHLETLGSREEIAKAKLEIIDGLKDEGLCLYNGDEP----LLLKNKNLSS 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG+ DF + ++ +V HG N+L + ++ Sbjct: 244 INCKAFGEKYTNDFFPTNVQLDEYGIHFKLNDSNIQYDVPLHGKH-----NILNAIVGIA 298 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 I K R++ + FT+I++++NA+P+SMKAAI ++ Sbjct: 299 IGQYYNVPVEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETFQTLN 358 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 + + I V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + + S Sbjct: 359 AYKKK--IIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKYDS 416 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V + + + + D+V++K S ++ Sbjct: 417 GKVQSFNSKAKIAEEVLKVITKKDIVLLKGSRGIALEEIV 456 >gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] Length = 455 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 135/467 (28%), Positives = 219/467 (46%), Gaps = 18/467 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ F + + + G I P + G++ID R + P AF A G DGH F+ Sbjct: 1 MTPMP-FANFVHVVGGIPVIHEAPNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A ++GA + VV D+ ++G P V + L A+ LA R + + ++ ITGS GK Sbjct: 60 AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM+ LS+I + NN +G+PLT+ + + E+GM LG+I L Sbjct: 116 TTTKEMVAAVLSAIGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP+I VIT I H+ E IA AK E+ L K G LN DD + ++ ++ Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRT 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + S G D + E EV + + +G H N L Sbjct: 236 TARILWYGMSEG----CDIRATSVAWSQEGMSFEVDTPHGTATMRIRLLGQHNVMNALAA 291 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + L ++ K + + ++ G T+ID++YNA+P+S+ A++ V Sbjct: 292 IAVGQTLGLSLEDIEKG----LGRVEAQRGRLRLVDAGDVTVIDDAYNASPSSVAASLEV 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I+ G R+AVLGDM E+GE++ H D+ ++ + + G + A Sbjct: 348 LERIA--RPGHRVAVLGDMLELGEMAVQAHRDVGRRVASAGVDRLLCVGELAAEMARAAE 405 Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + V + ++ L ++S L GDVV+VK+S R ++ + Sbjct: 406 EAGVPEVRHFNGLEELLASVRSYLQPGDVVLVKASRGVQLDRAVDAI 452 >gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] Length = 458 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 128/467 (27%), Positives = 210/467 (44%), Gaps = 12/467 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P + + ++ G P+ V + DSR + P + FFA+ G +DGH+FI Sbjct: 1 MEP-RSLTYVAASMLGELRAGSPETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KG VV + V VD+ AL +LA R + IIA+ GS GKT Sbjct: 60 ASKGVAAVVAERTRMTGKMPE-CGVIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE+L L T S+NN IGVP TL R+ + E+G +H GE+ L Sbjct: 119 STKELLAGVLKKRLNTLWSEASFNNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVS 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P +IT+I HL F + +A + + E L G +FLN D + + + ++ Sbjct: 179 MIQPKFGIITSIGREHLEFFGDVAGVADEEGWLAELLPADGKLFLNGDSDWTKQIARRTR 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++ FG + K ++ + S + +G H A N L Sbjct: 239 ATVVRVG--FGAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATFAL 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L D + LS + R N +ID++YNAN SM AA++ L Sbjct: 297 AVGAELGLTRDHLEQGLSDCKSAKMRL----QLSNWNGICVIDDAYNANADSMLAALNTL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ GRR+AVLGDM E+G S++ H ++ ++ ++ ++ G A+ + Sbjct: 353 QEMP--CVGRRVAVLGDMAELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSARD 410 Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + +++ L GDVV++K+S S RL +L Sbjct: 411 AGLAEASEFDDVPAAAAAVKNFLKAGDVVLLKASRSTRLERLFEMLK 457 >gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 479 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 201/467 (43%), Positives = 268/467 (57%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A+ ++ P V GISIDSR++AP +A+FAI+G +DGHDF+ A++ Sbjct: 5 PLWTSDAIIAAMGA-AVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAALK 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV T P+ VDDVL L L AAR R A +IA+TGSVGKT+T Sbjct: 64 AGAALAVVETAQRGKFAP-DAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + +T+A + S+NNH GVPLTLAR P V + +FE+GM+H GEI L +V Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+ F+ L A + Sbjct: 183 RPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFKRLTASARKA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G++ I SFG AD +LR ++ S ++ + G + + G H+A N L L Sbjct: 243 GVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ A AL+ P GRG R L QG TLIDESYNANPASM AA+ VL Sbjct: 303 ADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASMAAALGVLGS 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G+GRRIAVLGDM E+G H LA + + V+ G + L DAL Sbjct: 363 AEISGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCCGPLMHNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ET L + +++ GDV+++K S ++ L + FP Sbjct: 423 RGGYAETAAALESQVVAAVRSGDVLMIKGSLGSRMKTIVTALEKRFP 469 >gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 460 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 203/468 (43%), Gaps = 20/468 (4%) Query: 7 FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ +A+ + V + DSR ++P F I G DGHDFI AV GA Sbjct: 5 LSEIARALGTDEYPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D +P V + L AL KLA + ++AITGS GKTTTK+M Sbjct: 64 VATLWAEDHQE-RRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTKDM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L + ++NN +GVP+T+ M + + + E+GM G++ FL+ LV+P Sbjct: 123 TAAVLEAEYNVVKTKANFNNELGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I AH+ F E IA AK EI +GL++ G N D+ L + Sbjct: 183 IAVITMIGEAHIEFFKTRERIADAKMEITDGLKEDGCFVFNGDEP----LLEQRAKDLNV 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 Y FG + D + + + E I N+ L +++ Sbjct: 239 EQYRFGLKADNDVSASDIQ----GTDTSTMFKTNLDEETTVTIPVLGDYNVTNALAAIAV 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 K + R + ++ + YN+NP + +A + + + Sbjct: 295 GHKYHIDLKKEAEALVDFDLTKNRTEWLTGKKGERILSDVYNSNPTAARAVLDSFANV-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----- 420 + EGRR+ VLGDM E+GE + H LAE L+ + V+L G H+ AL+ L Sbjct: 353 NTEGRRLVVLGDMLELGENADQMHASLAEKLNAKRFAQVYLIGPHMKALEKRLIDEDIYS 412 Query: 421 SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY ET + L + + + D +++K+S+ +++ + Sbjct: 413 KDAVHYYETGELKRLTDDLSTEIQANDSILLKASHGIHLENVVDKIKN 460 >gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 453 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 213/464 (45%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++L+AI G + +G IS D+R I F A+KG +++G+++++ A++ G Sbjct: 3 LTLNEVLKAIDGELLIKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAG 62 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +++ + + V V+D AL LA R + ++ ITGS GKT+TK Sbjct: 63 ATVAIIDEVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS + G++NN IG+PL + + D + E+G ++ EI L ++ R Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNEIHRLANIAR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT + +H+ E I K I + +K T+ +NY++ + K + Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYEND----MLQKVNESN 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I G K D + E + + V G+ + +G H N L+ + I Sbjct: 239 EFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ F R + + + FT+I++ YNA+P SM S LS Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSM---KSALSV 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + R+IAVLGDM E+GE ++S H + + V +G K Sbjct: 352 LKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAI-GKADIVLTTGEFREDYKSGF--GK 408 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++ + + DGDV++VK+S S F ++ + Sbjct: 409 DTVTFNCKEELKNYLCNLIKDGDVILVKASRSAKFEDIVKNIEA 452 >gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 455 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 215/464 (46%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ +I ++ ++ DSR I F +KG DGHDFI A+ GA Sbjct: 5 LAEIAKALD-TTIEGNSDPVISSVAFDSRKINENALFVPLKGER-DGHDFINSAIANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + PV VDD L A+ +LA + ++ ITGS GKTTTK+M+ Sbjct: 63 ATLWEKGH--PNKPDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LV+P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ K Sbjct: 181 CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKISQAKS-- 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + ++K + + IG H N + + + Sbjct: 239 --TFGFNDQDTIYALEFKSYMHHASFVTS--SSEQKFSIPMIGKHNVSNAMAAICVGHHF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D +LS F P R + + + + ++D+ YN+NP + KA ++ Q+ Sbjct: 295 GETDDEIAASLSNFTPTANRMQWRKGDVGED---IMDDIYNSNPTAAKAVLTSFGQVEVP 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S + H LAE L I+ V+L G + L++A+ S Sbjct: 352 EGGRRIAVLGDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAPAS 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + M+ + +++ + D+V++K+S+ +++ LL Sbjct: 412 LHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455 >gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 487 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 205/472 (43%), Gaps = 18/472 (3%) Query: 3 PLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 L+T ++ + + + + + DSRS+ + F A +G +D H F+ Sbjct: 11 ALFTVEEICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVP 70 Query: 59 HAVQKGAGLVVVNTDM--VASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITG 115 A+ +GA +V D + +PV V D L A +LA R R +IAITG Sbjct: 71 KALAQGAVCAIVQEDYRLPPAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITG 130 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKTTTKEM+ ++ KT G+ NN IGVP TL ++ + E+G+ G+ Sbjct: 131 SNGKTTTKEMVAQVVAQRWKTLKTEGNLNNRIGVPQTLFQLAPRHQAAVIEMGVDQQGQT 190 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L + RP I VIT I P HL F +E A AKAE+ + L + G + LN DD +F+ L Sbjct: 191 TRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDHLPQDGAVVLNADDEYFDYL 250 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A++ + +FG S A + + + + + I N Sbjct: 251 AARAQ----CRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEIRIRAQGQHN 306 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + L + + + A++ K +I++ YNANPASMKA Sbjct: 307 VSNALAAA-AVGYVLGLSGTAIAEGLAKFRPAAMRSQISLSHGVQVINDCYNANPASMKA 365 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ +L+++ R IA LGDM E+G S+ H ++ L+ I H+ G L Sbjct: 366 AVQLLAEL--GRGKRSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACGVLGRELA 423 Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + ++ + + + GDVV+VK+S +++ Sbjct: 424 EGARQAGMASDRITELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVEA 475 >gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 452 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 203/469 (43%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + Q G G + ++ D+R F A+KG +D HDF+L A Sbjct: 1 MISV-TLQHIAQLTGGTLHG--SDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G ++V+ + + + V D AL +LA R +S A I+A+TGS GKT Sbjct: 58 INAGCSGLLVSKRL-----PVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN IGVPLTL R+ + + ELG +H GEI + T Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLKPQHRYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F + +A AK EIF GL GT +N + + + + H Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINGESNDWPHWQQALH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G ++DF ++ + + ++V G H N L Sbjct: 233 --GKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIANALAAS 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + LS GR + + L+D+SYNAN SM AA VL Sbjct: 291 ALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R+ ++GDM EMG + H + + I V +G + DA Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGLLSHGISDA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467 S + L L + +VK S S +++ +L E+ Sbjct: 401 SGVGEHFADKAALGARAIELLAQHQHITLLVKGSRSASMEQVVQILQEK 449 >gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 440 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 191/461 (41%), Gaps = 24/461 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + VN I DSR I + F +KG DGHDFI A Sbjct: 3 LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + VDD L A LA ++K +IA+TGS GKTTTK Sbjct: 62 GAIISFSEKEVEQA-------HLLVDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS KTY G++NN IG+P T+ MP D + + E+GM H G+I FL+ L + Sbjct: 115 DMIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQ 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT I AHL E IA K I G + D ++ Sbjct: 175 PELALITLIGEAHLEFMGSRENIAKGKMGITAG---LHGELIAPADPIINAFIPENQK-- 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + L K + + + + G + A N ++ + Sbjct: 230 ------ISRFGLPGEDLFITKLIEHKERLTFETNFLDESITIPVPGKYNATNAMLAAYVG 283 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 AL E R ++ L+ + YNANP +M+ + I Sbjct: 284 LHYGLTEAEIKNALKE---VELTRNRTEWNKSKNGADLLSDVYNANPTAMRLILETFQAI 340 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GR+IAVL DM E+G + H ++ + + I V+L G + L D + Sbjct: 341 PKNENGRKIAVLADMLELGPTAAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKP 399 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V Y +D L + + L D V+ K SNS ++ L Sbjct: 400 VSYFTDLDLLTESLSADLKPADQVLFKGSNSMKLSEVVEKL 440 >gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile 630] gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Clostridium difficile] Length = 457 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 136/464 (29%), Positives = 216/464 (46%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++T T+ +N DD F LK K H + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEH---V 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +KN D + + + GK E+ IG H N + + + Sbjct: 241 YKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F + R + T+I++SYNA+P SM +I Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420 +GRR+A+LGD+ EMGE+S+ H + + S+ N + G + + + + Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] Length = 453 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 128/462 (27%), Positives = 203/462 (43%), Gaps = 14/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I + G++IDSR+I F KG + DGH F+ A++ GA Sbjct: 5 TLKQIKAWIDCEIDEQYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G D+ + P+ VDD L AL LA A +IA+TGS GKTTTK+M Sbjct: 65 GASFYQKDVSLP-KDIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ G+YNN IG+PLT+ + + D I E+GMS EI L+ + P Sbjct: 124 IECVLNTEFNVKKTQGNYNNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL+ GT + D+ + + + Sbjct: 184 IAVITNIGESHMQDLGSREGIAQAKSEITIGLKSNGTFIYDGDEPLLKPHVEQ---IKEA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G + Q ++ E +G H +N + + + Sbjct: 241 KCISIGLEQGNSLVCSVNDQV--ETEGIAFTINHQQEYELPILGIHNMKNAAIAIAVGQE 298 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L T + + G R + T+I+++YNA+P SMKAAI LS + Sbjct: 299 LGLSYKTIQHNIKR---VKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM-- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHV 424 GR+I VLGD+ E+G+ SQ H ++ L +I + G + + Sbjct: 354 --NGRKIIVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLITFGSEATFIHNTGKSYVDEA 411 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+ + L ++ + D V++K S +++ L++ Sbjct: 412 HHFNDKEKLISYMTHIVQPDDNVLIKGSRGMKLEEVVDALIK 453 >gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] Length = 462 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 137/466 (29%), Positives = 227/466 (48%), Gaps = 14/466 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++A++ + + +S D+R ++ F +KG DGHD+I A+ +G Sbjct: 5 TVAQIVKAVKAIDYQTDYRFDMIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V I VDD L A +LA + + +I ITGS GKTTTK+ Sbjct: 64 AKAVFWGRQ--DQTPPEGICAIWVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L+S + Y G++NN IG+P T+ MP D + + E+GMS GEI FL+ L +P Sbjct: 122 MTAAVLASRYRVYKTQGNFNNDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A IT I +H+ N IA AK EI +GL + G+I ++ E + A Sbjct: 182 SVAAITLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEH 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + FG+ ++ Q + + + + ++ V +G + N L L + Sbjct: 242 FKVLPFGEGSSSVIQAENIQLFEDHT-IFDLVKPSKQSVQLPVLGAYNVNNALAALQVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ AI+A+ F + R + +++++YNA+P +MK+ I + ++ Sbjct: 301 ECGVPLEQAIEAIQQFELTKNR---TQWVDGIHGSKILNDAYNASPIAMKSVIQSFTSVA 357 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 +GR+I VLGD+ E+GE S++ H ++EV+ +I V+L G + AL +AL + Sbjct: 358 --TKGRKIVVLGDIRELGEQSKALHASISEVMFPEDIQEVYLYGEEMSALFEALKTRFEA 415 Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H+HY E L ++ L D V+VKSSN G ++ L E Sbjct: 416 SHLHYVENDKQALIRLLEEELRQNDQVLVKSSNGTGLLSVVEALKE 461 >gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-66c26] gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-76w55] gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-97b34] gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-37x79] gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile QCD-32g58] gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] Length = 457 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 136/464 (29%), Positives = 217/464 (46%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR + Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++T T+ +N DD F LK K H + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEH---V 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +KN D + + + GK E+ IG H N + + + Sbjct: 241 YKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F + R + T+I++SYNA+P SM +I Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420 +GRR+A+LGD+ EMGE+S+ H + + S+ N + G + + + + Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thiomicrospira crunogena XCL-2] gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 474 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 131/476 (27%), Positives = 210/476 (44%), Gaps = 20/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M W DL++A+ G G +S D+R++ + AIKG H+DGH FI Sbjct: 1 MT--WNLADLVEAVNGVLAGELLGDEPVVFTSVSTDTRTLKSGALYIAIKGEHFDGHAFI 58 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGS 116 AV++GA V+++ M +P VDD A + A R + ++ +TGS Sbjct: 59 GEAVRQGAVAVLISEPM-----ETVVPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGS 113 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTTK +L LS + + G+ NN G+P TL + D+ + E+G +H+ EI Sbjct: 114 NGKTTTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVKEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +LT + +P +AVIT A AHL F +E + K EI +G+ + G LN D FE Sbjct: 174 YLTQIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVCEGGKAVLNTDSPGFEYWI 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 KS LG+ +FG+++ A+ Q+ + Q Q + L +++ + + Sbjct: 234 EKSQQLGLSV-ITFGQARFANVQVTDFTQAENQITFTLDLNWQNIRQAEVVTMPVLGFHN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 M + + + + LID+SYNANP+S+KAA Sbjct: 293 AMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSKLPQGLLIDDSYNANPSSVKAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I L Q+ G LG M E+G S++ H D+A ++H+ L G + Sbjct: 353 IDALVQLP----GPSAVCLGGMAELGAESEALHQDVAAFAKAKGVTHLLLFGEATQCMPT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470 + E+ + L + + V+VK S S ++ +L A Sbjct: 409 VFGEG--AKWFESHEALAQEAVDLIQQDKIQNVLVKGSRSAKMEQVSQKVLARLEA 462 >gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] Length = 447 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 128/460 (27%), Positives = 202/460 (43%), Gaps = 19/460 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + + + G + + ++G+SIDSR+I F KG H DGH ++ A+ KGA Sbjct: 7 SLNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGA 66 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D A +PV V+D L AL +L+ A +IA+TGS GKTTTK+M Sbjct: 67 YAALWQRD--AGEVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDM 124 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS K G+YNN IG+PLTL ++ D + I E+GMS GEI L+H+ PH Sbjct: 125 IEAVLSPHFKVKKTQGNYNNEIGLPLTLCQLDEDTEISILEMGMSGFGEISLLSHIAEPH 184 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA IT I +H+ + E IA AK EI +G + E L Sbjct: 185 IAAITNIGESHMRDLGSREGIAKAKYEITDG------LTGPLFYDGDEALLKPLVKDN-- 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 K + + + M+ + + + + + N ++I Sbjct: 237 ------KDAHRIGFNEDNEYYIHEMIMQDKHLQFKVNDDTYIVPTLGSHNARNATIAIAI 290 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + + G R + LI+++YNA+P SMKAAI +SQ+ Sbjct: 291 GSYLGLSPEQINHSLQQLKLTGMRMEQLEGKDGALLINDAYNASPTSMKAAIDTVSQMDS 350 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 + I V GD+ E+GE +H + L I +V+ +G + A V Sbjct: 351 EVK---IIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNAARHISKAAEPFTTVQ 407 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +T + L ++ L V+ K+S +IN LL Sbjct: 408 HFDTKEALTNHLKGMLNAHTSVLFKASRGMKLETIINELL 447 >gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] Length = 469 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 213/472 (45%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T+ ++ A+ + I+ D+R I+ + F A++G +DG DF Sbjct: 1 MTGM-TWDEVQAAVGAAAHNGKLAGNTVFPHITTDTRKISSGDLFVALRGEKFDGADFAA 59 Query: 59 HAVQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 A+++GA V+V +T ++ V DD L A +A A R++ +IAIT Sbjct: 60 EALERGAAAVIVGTPLSTSAEKALKKAKGTVLKADDGLRAYQAIAHAWRMKFDIPVIAIT 119 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTKE+ LS K +YNN +G+PLTL + + + E+GM LG+ Sbjct: 120 GSNGKTTTKELTAAVLSGRGKVCRTAENYNNEVGLPLTLLGIVPEDFAAVVEIGMRGLGQ 179 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + P I ++T + H+ IE IA AKAE+ E + GT+ LN DDS Sbjct: 180 IAALAPVAAPTIGIVTNVCEVHMELLGSIENIAKAKAELVEAIPSGGTVILNADDSRVAA 239 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 +++ A I ++ +AD + + ++ S V + E G H Sbjct: 240 MRS--FAADGVRILTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVS 297 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L L L L + R + G + I+++YNA+P+SM Sbjct: 298 NTLAALAAGFALGLTPQEMQAGLRNIEGTKMRY----ETESVGAWMFINDAYNASPSSMH 353 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AA+ + + P GR+IAVLGDM E+G ++ H + + + V G + Sbjct: 354 AALETTAALYP---GRKIAVLGDMLELGAAAEEAHRMIGRRAAELGFAAVVTYGPQARWI 410 Query: 415 KDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +A + ++ET + ++ L DGD V+ K S ++I LL Sbjct: 411 HEAAEETGCAACFHAETHEEAAQLLRKILSDGDTVLFKGSRGMRMEQVIALL 462 >gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus denitrificans PD1222] gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paracoccus denitrificans PD1222] Length = 461 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 246/465 (52%), Gaps = 17/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D +A G + V G+SID+R+I P + F A++ DGHDF+ A Sbjct: 1 MT-LWTSQDAAEATGGRATR---DFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ + + P+ V DVL AL L A R R + ++AITGSVGKT Sbjct: 56 LEKGACAALVSR--IPEGVAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEM +AL+ + +A SYNNH GVPLTLARMP D DF I E+GM+H GEI L Sbjct: 114 STKEMARVALAGQGRVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLAR 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A++TT+A AHL F IE IA K IF GL + GT + D +LL+ Sbjct: 174 LARPHVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRD--- 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + K + + + ++ G++++ + G H N + L Sbjct: 231 CADDAAAIVIGFGQQGMARPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGML 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +S ADV A K LS + P GRG + LID++YN+NP S+ A ++ L Sbjct: 291 AALSAAGADVAEAAKHLSDWRPPLGRGA----VEDLDGIRLIDDAYNSNPTSLSAGLATL 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ GRR+A+LGDM E+G + H +A ++ + V +G + AL +ALP+ Sbjct: 347 ARL---TGGRRVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQ 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ET L + + GD+V+VK S S +++ L Sbjct: 404 GRRGMHAETAAELAGKVGELVASGDIVLVKGSKSSKVSTVVDALR 448 >gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] Length = 458 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 238/470 (50%), Gaps = 17/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT ++ QA G V+G++ DSR + + F A+KG DGH F+ A Sbjct: 1 MTALWTSEEIAQATGG---VASAPFAVSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ + P V D AL LA A+R R + ++ +TGSVGKT Sbjct: 58 FGQGAAGAIVSEAIAQ-------PHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKT 110 Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L AL I + + SYNNH+GVPL+L+RMP + +G+FE+GM+H GE+ L Sbjct: 111 GTKEALFHALDRICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAAL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T VRPH+A++T IAPAH+ F E+IA AKAEIFEGLE GT + YD L AK Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I +FG AD R+ + + + L G + G H N L Sbjct: 231 AEKHAA-RILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSNAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L V + D+ A AL+ GRG+R + G LIDESYNANP SM Sbjct: 290 AVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSM---A 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L Q+ GRRIAVLG M E+G+ S+ H L E L ++ + L G + L +A Sbjct: 347 ATLKQLGREQAGRRIAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGDEMQPLAEA 406 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L I + IQ + GD ++VK SN G RL+ L E+ Sbjct: 407 LGGVIAFDHVPDAAKATDLIQGEMRAGDAILVKGSNGIGLSRLVAALQEK 456 >gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus helveticus H10] Length = 455 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 204/463 (44%), Gaps = 18/463 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ + + G + + ++ DSR I F ++G DGHDF+ A+ GA Sbjct: 6 AEIAKDLNTTCEGDD-KTVITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + +I V VD+ L A+ LA + T++ ITGS GKTTTK+M+ Sbjct: 64 TLW--KKGHPNKPKNITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + ++NN IGVP+T+ M + + + E+GM G++ L+ L P +A Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 VIT I AH+ F ++IA AK EI + L + G N D+ + K Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG +K + + + IG H N + + + Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGHHFG 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +LS F P R ++ + YN+NP +++A ++ Q+ Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDVGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422 GRRIAVLGDM E+G+ S H L + L I+ V+L G + L DAL P ++ Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLCDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENL 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H + + MD + +++ + D++V+K S+ ++ L Sbjct: 413 HYYTQDQMDHMINDLKNDIKPDDIIVLKGSHGMHLENVLARLR 455 >gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella frigidimarina NCIMB 400] gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 462 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 137/471 (29%), Positives = 213/471 (45%), Gaps = 18/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L Q + G G G + +S DSR+I Q F A+KG +DGHDF+ A Sbjct: 1 MISV-TMSVLAQHLNGTLHGQ--DGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V+ +V + I V D A+ K+ R +A+TGS GKT Sbjct: 58 IKNGAVALLVDHLLVDHPFAADIAQIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEML LS + G++NN IGVPLTL R+ ++G+FELG +H GEI + + Sbjct: 118 SVKEMLATILSQHHQVLFTAGNFNNEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSS 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P +A++ + AHL F +E +A AK+EIF L GT +N DD F + + +S Sbjct: 178 LVLPQVALVNNVGNAHLEGFGSLEGVAQAKSEIFNHLTPDGTAIINADDKFADFMLQQSQ 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + G+ V G H N L Sbjct: 238 GRKHLRFSREMNVDADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLHQVSNALAAA 297 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L + + ++ P +GR + + + G LID+SYNANP S+ AAI+ L Sbjct: 298 SMCIALDISLYDIAQGFALLKPVKGRMQPH----DLGRVLLIDDSYNANPTSVSAAINWL 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +G R VLGD+ E+G+ + H + + I ++ G +A Sbjct: 354 Q----QRDGYRCLVLGDLGELGDNAAPLHASIGLQVKNAAIESLFCCGQLSANTSEAFGS 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468 + + L + +Q L V+VK S S R+++ LL+ + Sbjct: 410 ----EHFCAQEPLIVALQKQLASTTGNITVLVKGSRSAAMERVVDSLLDAY 456 >gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC 14672] gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] Length = 476 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 126/476 (26%), Positives = 194/476 (40%), Gaps = 20/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G + I P V G + DSR P F A G DGHDF Sbjct: 1 MIAL-SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFVGERVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V+ GA V+ + + +P V+DV AL LA R T++A+TGS G Sbjct: 60 RVVEAGAAAVLASRP-------VGVPAIVVEDVQAALGALARHVVGRLGTTLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + F + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLTALTATEETKFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P + ++ + AH+ F G E+IA AK E+ E L + + L Sbjct: 173 TGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEG-GAAILNADDPLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG+S AD + + +L S Y Sbjct: 232 MASRTKAKVILFGESDEADVRAENVRLTDSGQ-PSFRLHTPSGACDVTMRLYGEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 291 LAAAAVAHELGMPADEIARALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALR 350 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L+ + S GR AVLG M E+G+ + + H + + N+S + G L Sbjct: 351 ALAAMGKASQAKGGRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREAAWL 410 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LLE Sbjct: 411 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 466 >gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] Length = 478 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 120/472 (25%), Positives = 194/472 (41%), Gaps = 14/472 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + D + G + P + ++ DSRS+ P + F A+ G +D HDF+ V Sbjct: 5 TVMMHATDAAAWMAGAHLAG-PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVV 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA V+V+ A++ ++ V V D L +LA R + ++A+TGS GKTT Sbjct: 64 ARGAAAVLVSRPPAATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTT 123 Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM++ + A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 124 VKEMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVL 183 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +P +A+I H +E +A A + L G D + + Sbjct: 184 AAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYA-R 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + +A ++ +EVQ G+ + +G H A+N L Sbjct: 243 VWKAAAGSRRVLDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALA 302 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + +AL F P +GR + +ID++YNANP SM+AAI Sbjct: 303 ATACALAAGVAPEVIAQALGNFAPVKGR---LQRKQGTHGGLVIDDTYNANPDSMRAAID 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + R VLGDM E+G +FH ++ I V +G DA Sbjct: 360 ALVTLPA----PRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDAF 415 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ V+VK S R++ L+ + P Sbjct: 416 GPG--AQHFASAEDLIEHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDPV 465 >gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 460 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++++AI Q VNG+ D+R + P + F + G H DGHDFI +A+ Sbjct: 3 MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAI 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA + +D + ++IP VDD L A KL+ + +IA+TGS GKTT Sbjct: 62 KGGAVATLWASDHT-NRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M+ LS ++NN IGVP T+ +M + DF + E+GM G++ FL+ L Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A+IT I AH+ F ++IA AK EI GL+ G + D+ L + Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP----LLIERAK 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG+S D K + EV L +V +G + N L + Sbjct: 237 QVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + I+ LS F + R ++ + YN+NP + + ++ S Sbjct: 296 VGKLFQIPQIEIIQKLSHF---DLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418 Q GRRI VLGDM E+G+ S H LA + I+ V+L G + AL + L Sbjct: 353 QTDVM--GRRIVVLGDMLELGDKSSQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P ++H + ++ +D L ++ + D V++K+S+ ++ L Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA 460 >gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] Length = 457 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 135/464 (29%), Positives = 215/464 (46%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ A G I V+ I IDSR Q AF AI G + DGH F+ A G Sbjct: 4 LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + N + S I + V D AL ++ + + I +TGSVGKTTT++ Sbjct: 64 CKTFIKNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ + NNH GVPLTL + + + + E+GMS EI++L +V P Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEIKYLVDIVNP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAVI+ I +H+ E I AK EI ++ T+ +N DD F LK K H + Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTLKEKEH---V 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +KN D + + + GK E+ IG H N + + + Sbjct: 241 YKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D K L F + R + T+I++SYNA+P SM +I Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420 +GRR+A+LGD+ EMGE+S+ H + + S+ N + G + + + + Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S ++++ E + +F + + GD ++VK S +++ L Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455 >gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806] Length = 454 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 132/466 (28%), Positives = 209/466 (44%), Gaps = 26/466 (5%) Query: 5 WTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + + L Q + I P V+GI+ DSRSI +AF A+KG +++GHDFI A+ Sbjct: 5 LSLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA ++V+ + + S +IPVF V + L +LA R + +IAITGSVGKTT Sbjct: 65 ARGAAALIVDQPVSVNY-SSNIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE++ L++ K + + +YNN IGVP TL + D + E+GM GEI L + Sbjct: 124 TKELIASVLATRGKVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQI 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P IAVIT + AH+ IA AK E+ + LNYD + Sbjct: 184 AQPTIAVITNVGTAHIGRLGSESAIAEAKCELLSESPSSSIAVLNYDHPLLTETAKRVWQ 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T FG + L+ ++ G H A N + L Sbjct: 244 GETITYGFFGGD------------IVGELLDLTTLRVNGLDFNLPLSGRHHALNFMAALA 291 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + IL D + + + V P + + L+DE+YNA SM ++ L Sbjct: 292 VAKILGIDWTSLQQGIKVNLPSGRAKRYQ----LEPDILLLDETYNAGLESM---LAALD 344 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419 + R +AVLG M E+G S+ H + E + I +++ + +A Sbjct: 345 LLKATPGQRHLAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIAEAA- 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +T L ++ + GD ++ K+S+S G R++ L+ Sbjct: 404 TGVACECFQTHADLINRLKEVIDSGDRILCKASHSVGLNRVVEELI 449 >gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] Length = 449 Score = 259 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 222/463 (47%), Gaps = 19/463 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++++A G + + VNG + D+R I + + G + DGH +I A GA Sbjct: 3 IKEIIEATNGQLLSGDMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + + V V D L A++ +A R+ + ++ ITGSVGKT+TK+M+ Sbjct: 63 SIITAHKVHYPDKN----VILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKDMI 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 +S+ KT +G+YNNHIG+PLT+ R+ + + I E+GM+HLGEI LT + P + Sbjct: 119 YSVVSTKYKTLKTLGNYNNHIGLPLTILRLQNE-EVMILEMGMNHLGEIEHLTQIALPDV 177 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A IT I AH+ E+I AK EI GL+ GT+ +N D+ + A++ Sbjct: 178 AAITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVNAEN-----YH 232 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G++++ D + + E S+ ++ QG+ V G H N L+ + I L Sbjct: 233 MIRVGQNEDCDLKAIDVELRLEDSYFDIDYQGQRYHVHVPVSGEHFVYNALIAIAIGLSL 292 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D++ I + F + R N +ID +YNAN SMK++++VL+Q Sbjct: 293 DIDMNLCIAGVEHFELTKNRMDMIELKDNIK---VIDGTYNANLDSMKSSLAVLAQYPKR 349 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHV 424 IAVL DM E+GE Q+ H ++ + NI + G + + + Sbjct: 350 K----IAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCVGEASCYIVEKAQSLGLKNA 405 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ E L ++ L D +++K SN ++ L E Sbjct: 406 YHFEDNQALMTYLDEMLEPEDTILIKGSNGMHLKEVVEHLKER 448 >gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] Length = 457 Score = 259 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 192/468 (41%), Gaps = 17/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + ++ I + V+ + D+R + P E FFA+KG +YD +DF+ Sbjct: 1 MKTM-SLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQG 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 K A VVV+ V S + V V D L AL LA R +I +TGS GKT Sbjct: 60 KAKQAAAVVVSR--VLSAVNSGTAVLQVQDSLKALQALARYNRQLFNIPVIGVTGSNGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK+M+ L KT G+YNN IG+PLTL M + E+ M GEI FL Sbjct: 118 STKDMIASVLGVRYKTLKTSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEIDFLCQ 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP AVIT I AHL E IA+AK E+ + + G L+ + S L Sbjct: 178 LARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLA---- 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + +G D + + S S V ++ G H N L + Sbjct: 234 GLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQEDIFLPIPGRHNIINSLAAV 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ L + L+ R + + T+I++ YNANP S KAA++ L Sbjct: 294 GVGLELGLSLPEIKAGLAEVVLTGMRMEIIKING----ITVINDVYNANPDSSKAALTTL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + + IAVLG M E+G + H ++ ++ G + Sbjct: 350 ADLGHNRRK--IAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLVTVGELARQIAVGAKN 407 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + E + DV++VK S +++ L Sbjct: 408 AGMPADRIFVYEDKQRACDCLGELCKKEDVILVKGSRGMHMEEVVSYL 455 >gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] Length = 462 Score = 259 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 213/466 (45%), Gaps = 18/466 (3%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ +A+Q ++ P V G++ DSR + + F + G + DGH +I A++ GA Sbjct: 5 VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + +D + +PV V D L AL +L + ++A+TGS GKTTTK+M Sbjct: 64 VATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ ++NN IGVP+TL M + + + E+GM H GE+ FL+ LV+P Sbjct: 123 IASVLSTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT I AH+ F + IA AK EI GL++ GT N D+ L + + Sbjct: 183 VAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAKEVSQ 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG S + Q + + I A N+ L + + Sbjct: 239 HQRTFGLDDTNTLAGSDITT----SRAQTQFKTSLWPDNTYTIPMMGAYNVNNALAALLV 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A R ++ + YN+NP + + ++ + + Sbjct: 295 ADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAILSDVYNSNPTAARRVLAAFAAVP- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 +G+RIAVLGDM E+G+ S + H+ LA L I+ V+L+G H+ AL + L + Sbjct: 354 -TKGQRIAVLGDMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAG 412 Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY +T L + +++ D V++K S+ +++ L Sbjct: 413 AVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTALEA 458 >gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Erwinia sp. Ejp617] Length = 452 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 202/469 (43%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + Q G G + ++ D+R F A+KG +D HDF+L A Sbjct: 1 MISV-TLQHIAQLTGGTLHG--SDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G ++V+ + + + V D AL +LA R +S A I+A+TGS GKT Sbjct: 58 INAGCSGLLVSKRL-----PVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN IGVPLTL R+ + + ELG +H GEI + T Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLKPQHRYAVIELGANHQGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F + +A AK EIF GL GT +N + + + H Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINGESHDWPHWQQALH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G ++DF ++ + + ++V G H N L Sbjct: 233 --GKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIANALAAS 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + LS GR + + L+D+SYNAN SM AA VL Sbjct: 291 ALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R+ ++GDM EMG + H + + I V +G + DA Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGLLSHGISDA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467 S + L L + +VK S S +++ +L E+ Sbjct: 401 SGVGEHFADKAALGARAIELLAQHQHITLLVKGSRSASMEQVVQILQEK 449 >gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 459 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 212/474 (44%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M L T L Q G ++ ++ DSR + F A+KG +D HDF Sbjct: 1 MISL-TLQQLSQVTDGVLNQVTEQQAANICISDVTTDSRRVGNGSLFIALKGERFDAHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 AV+ GAG ++V+ + ++ P V D A+ KLA R +S A ++A+TGS Sbjct: 60 FADAVKAGAGALLVSR-----VLDINFPQVVVKDTRLAMGKLASWVRQQSNARVVALTGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM L T G+ NN IGVPLTL R+ +F + ELG SH+GEI Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLFRLTEQHEFAVVELGASHVGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + RP A++ + AHL++F + IA AK EIF GL + GT +N + + + Sbjct: 175 YTVEMARPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLSEKGTAIINMESNDWAHW- 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + +S ++ ADF + + + S E+ G H N Sbjct: 234 QQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVANA 293 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + LS GR A L+D++YNAN SM A Sbjct: 294 LAASALAISVGATLQDIRLGLSELKAVPGRLFPINLAEG---KLLLDDTYNANVGSMTVA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VLSQ+ G R+ V+GD+ +GE S +H + E ++ I+ V+ G + + + Sbjct: 351 VQVLSQMP----GYRVLVVGDIGALGEQSADYHRQIGETVASCGINSVFSVGKLSIHVSE 406 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468 A S + L + L V V+VK S + +++ L E F Sbjct: 407 A---SGCGQHFADKAALIATLVPLLQQHKVFSVLVKGSRNTTMEDVVHALQESF 457 >gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Xanthobacter autotrophicus Py2] gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xanthobacter autotrophicus Py2] Length = 493 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 207/467 (44%), Positives = 269/467 (57%), Gaps = 3/467 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L T ++++A G V GISIDSR++ P +AFFAI G + DGH ++ A+ Sbjct: 22 LHTVGEMVEATGAAVRGAPHD--VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGA 79 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L VV D P+ VDDVL AL +A AAR RSKA I+A+TGSVGKTTTK Sbjct: 80 GAALCVVARDRADGF-PADAPLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTK 138 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L IAL + +T+A SYNNH GVPL+LAR P + +G+FE+GM+H GEI L LVR Sbjct: 139 EALRIALGADGETHASAASYNNHWGVPLSLARFPREARYGVFEIGMNHPGEITPLVRLVR 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++TT+ P H++ FS IEEIA AKAEIF+G+E G LN D+ F+ LKA + A G Sbjct: 199 PHVAIVTTVEPVHIAQFSSIEEIADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARG 258 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I I SFG + AD +L+ S S + G + G H+ QNML L Sbjct: 259 ISRIVSFGSGEGADVRLKDAALKSYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAA 318 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + AD+ A ALS P GRG + L G TL+DESYNANPASM+AA+ VLS+ Sbjct: 319 KLAGADMALAALALSHLKPPPGRGVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRT 378 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 GRRIAVLGDM E+G ++ H LAE + I V+ G + AL ALP Sbjct: 379 PVGPRGRRIAVLGDMLELGPDGEAHHAGLAEAIVAAKIDQVYCCGPQMHALWQALPSERR 438 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Y+ L + +++ GD ++VK SN L+ L E F A Sbjct: 439 GGYAIHATHLEPMVAAAIRVGDTLMVKGSNGSRMGPLVKKLAERFRA 485 >gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 462 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 212/466 (45%), Gaps = 18/466 (3%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ +A+Q ++ P V G++ DSR + + F + G + DGH +I A++ GA Sbjct: 5 VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + +D + +PV V D L AL +L + ++A+TGS GKTTTK+M Sbjct: 64 VATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L + ++NN IGVP+TL M + + + E+GM H GE+ FL+ LV+P Sbjct: 123 IASVLGTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPD 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT I AH+ F + IA AK EI GL++ GT N D+ L + + Sbjct: 183 VAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAKEVSQ 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG S + Q + + I A N+ L + + Sbjct: 239 HQRTFGLDDTNTLAGSDITT----SRAQTQFKTSLWPDNTYTIPMMGAYNVNNALAALLV 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A R ++ + YN+NP + + ++ + + Sbjct: 295 ADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAILSDVYNSNPTAARRVLAAFAAVP- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 +G+RIAVLGDM E+G+ S + H+ LA L I+ V+L+G H+ AL + L + Sbjct: 354 -TKGQRIAVLGDMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAG 412 Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY +T L + +++ D V++K S+ +++ L Sbjct: 413 AVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTALEA 458 >gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 454 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 211/467 (45%), Gaps = 21/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58 M L + L + + G + + G+ IDS+ I F I DGHD++ Sbjct: 1 MIQLQ-LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKITKGNLFVPII--RVKDGHDYVK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A++KGA + IP+ VDD L AL K+A R S +I ITGS G Sbjct: 58 EAMEKGAAASLWKKSYGD--PPKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT K++++ LS+ + + G+ N+ IG+PLT+ M D +F I E+GMS G+IR L Sbjct: 116 KTMVKDIISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQIRNL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +P +A+IT I +HL EEIA AK EI +GL G N D+ L ++ Sbjct: 176 AQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEP----LLSQ 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + SFG D + ++ +V HG + + Sbjct: 232 NINMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGI 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + K R++ + FT+I++++NA+P+SMKAAI Sbjct: 292 AV-----GQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIE 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +++ + + I V+GDM E+G+ ++++H ++ E+L+ +I +V+ G + + Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEA 404 Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++ + + + + + DVV++K S ++ Sbjct: 405 RKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451 >gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 451 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 203/470 (43%), Gaps = 27/470 (5%) Query: 4 LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T DL Q + IG G + +S D+R++ F A++G +D HDF AV Sbjct: 1 MMTLRLADLAQVLDARLIG--EDGEITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAV 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA ++V ++ SL+IP V D L L + R R ++AITGS GKTT Sbjct: 59 AAGASALLVEREL-----SLAIPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KEM T L + A G++NN +GVPLTL R+ F + ELG +H GEI + T L Sbjct: 114 VKEMTTAILRHEGEVLATAGNFNNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSL 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP A+I +A AHL F +E + AK+EIFEGL + GT +N D +F+ +A Sbjct: 174 ARPDAALINNVAAAHLEGFGSLEGVFHAKSEIFEGLSEQGTAIVNADSAFWPKWQAA--- 230 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 GI +S + + + + G H N L Sbjct: 231 -GIHCAFSIEDQNQPFHARGIALNGQGCAEFVMVTPNGELSLTLAIPGRHNVANALAAAA 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L A + + L P +GR R TL+D++YNA+ S+ A I L+ Sbjct: 290 GCLALGASLASVKAGLEQMAPVKGRFCVQRWGG----LTLVDDTYNASVESVLAGIDALT 345 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G ++ V GDM E+GE S H + S + V G DA Sbjct: 346 AM----GGYKVLVFGDMKELGEESAEQHARVGRHASECGLDAVLTVGEQSRHTADAAA-- 399 Query: 422 IHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFP 469 + + LF + + ++VK + ++ ++++ Sbjct: 400 --GRHFDNKASLFEVLAQMINTHQEISILVKGARGSRMEDIVKMVVDRQE 447 >gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Paris] gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Paris] gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 445 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 138/444 (31%), Positives = 204/444 (45%), Gaps = 19/444 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+SID+R++ P FFAI G +DGHDFI A KGA VVN I + I Sbjct: 17 NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHI 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P F V L AL K+A A R IIA+TGS GKTT KEM+ L ++A G+ Sbjct: 73 PQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 130 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIGVPL++ + + +FELG +H GEI +V+P +++I IAPAH+ F I Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + +A +K EI +GL TG +N DD++ I F AD + Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILR---FSSLHPADIYAQDI 247 Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + L +E+ G H +N L + + + L+ F Sbjct: 248 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR Q T+ID++YNAN S+ A+ VL GR+I V GDM E+G Sbjct: 308 VKGRMT---MLSGQNQSTVIDDTYNANLRSVLTALEVL----SGRPGRKIFVFGDMGELG 360 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + H ++ I + G H A + + + L +++ L Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLT 418 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L++ Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442 >gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] Length = 456 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 201/468 (42%), Gaps = 20/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ A G G V G++IDSR I F AI+G DGH FI ++ Sbjct: 4 MTLKEIAVACGGIYYGDDENYYKEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIH 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA V I S S P V+ AL +A R + ++ I+GSVGKT+T Sbjct: 64 DGALCAVSEKR----IESASYPYIMVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L G++NN IG+PLT+ + + + + E+G+S GE+ L + Sbjct: 120 KEMIASVLGQKYNVLKTEGNFNNEIGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + V+T I AHL E I AK E+F + G I LN DD L + + A Sbjct: 180 RPDVCVLTNIGCAHLEQLKSREGILKAKTEMFLYMNPKGDIILNGDDDM---LASVTPAN 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I+ ++ A + + G HM N L + + Sbjct: 237 HIEPVFFGLDPALAYSAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAAIAV 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L + + + P GR F T+ID+ YNANPASMKA++ VL Sbjct: 297 GRVLGMNDGEIRQGIESLVPLAGRNNLIE----TEFLTIIDDCYNANPASMKASLDVL-- 350 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LP 419 +G +A+LGDM E+G + H + E + I + G+ + Sbjct: 351 --SKAKGHTVAILGDMFELGPKAHEMHCETGEFAAEAGIDELICIGYLSEDIARGAVSAN 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + VH+ +T I + + D ++VK+S++ F ++ +L + Sbjct: 409 PEMEVHHFDTKTEFLDHIDTLINKDDTILVKASHAMEFPEIVEILKKR 456 >gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis M50/1] Length = 470 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 147/481 (30%), Positives = 209/481 (43%), Gaps = 33/481 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T + + G G + G IDSR + F A+KG DGH FI + Sbjct: 4 MTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFE 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA V+ ++ G P V+ LGA+ KLA R ++ ITGSVGKT+T Sbjct: 64 KGALAVLSEQELSDPAG----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS G++NN IG+PLT+ ++ + + E+G+S GE+ L + Sbjct: 120 KEMIASVLSQKYNVLKTEGNFNNEIGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I VIT I HL N + I AK E FE L GT LN DD K Sbjct: 180 YPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTPEGTAVLNGDDDKLCE--KKMVNG 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQ--------------CSEQSWMEVQLQGKSMEVVHHGI 288 Y GK + K + + + + +S V Sbjct: 238 KPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + + L VD + + GR +++G T+ID+ YNA Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS----NLIHKGGMTIIDDCYNA 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SMKA+I VL+ GR+IAVLGDM E+GE Q H + E I ++ +G Sbjct: 354 NPVSMKASIDVLA----AAPGRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAG 409 Query: 409 FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L A+ + VHY +T D L + + GD V+VK+S+ GF ++ L Sbjct: 410 ALSENLAQAVGKCSKETEVHYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQLT 469 Query: 466 E 466 + Sbjct: 470 K 470 >gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] Length = 452 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 208/465 (44%), Gaps = 21/465 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ +A G +G + G+ DSR I + G DGHDFI Sbjct: 4 MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQVFD 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA + D+ G P V+ V AL +A R + II ITGSVGKT+T Sbjct: 64 KGALCTLSEKDLNNPKG----PYIKVESVATALKDIAEFYRKQLSCKIIGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ L K G+YNN IG PLT+ ++ + + + E+G+S E+ L + Sbjct: 120 KEIIASVLEEKFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMHRLAKVS 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP + VIT I HL N + + AK E+F+ K + LN DD +K + Sbjct: 180 RPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVKE----V 235 Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 FG + D K++ + + ++++ K ++ V GYHM N + + Sbjct: 236 NGHAPVFFGIDTDRDVMAIKYESLGIQGTKVKIKYFDKELDTVIPIPGYHMIYNAMAAVC 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I S +D + GR T+ID+ YNANP SMKA+I+VL Sbjct: 296 IGSYFGMTLDEIDSGIRNLKAIGGRN----NIFTTNGITVIDDCYNANPMSMKASINVL- 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420 GR++A+LGDM E+GE S+ H ++ + ++ + + G + + A+ Sbjct: 351 ---SQANGRKVAILGDMFELGENSKKLHKEVGQ-AAVGKVDILVCIGNLSKDIAEAAIEG 406 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + Y + + + +GD V++K+SN F ++ L Sbjct: 407 GCNTLYFPNKADFEDNLSAYIKEGDTVLIKASNGMKFKTIVEKLK 451 >gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Lens] gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Lens] Length = 445 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 138/444 (31%), Positives = 204/444 (45%), Gaps = 19/444 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+SID+R++ P FFAI G +DGHDFI A KGA VVN I + I Sbjct: 17 NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHI 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P F V L AL K+A A R IIA+TGS GKTT KEM+ L ++A G+ Sbjct: 73 PQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 130 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIGVPL++ + + +FELG +H GEI +V+P +++I IAPAH+ F I Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + +A +K EI +GL TG +N DD++ I F AD + Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILR---FSSLHPADIYAQDI 247 Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + L +E+ G H +N L + + + L+ F Sbjct: 248 RLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR Q T+ID++YNAN S+ A+ VL GR+I V GDM E+G Sbjct: 308 VKGRMT---MLSGQNQSTVIDDTYNANLRSVLTALEVL----SGRPGRKIFVFGDMGELG 360 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E + H ++ I + G H A + + + L +++ L Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLT 418 Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466 V+VK S S +++ L++ Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442 >gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] Length = 465 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 134/468 (28%), Positives = 211/468 (45%), Gaps = 13/468 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D + I G I + + ISIDSR+I E FFAIKG +DGHDF++ A++ Sbjct: 3 IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRA 62 Query: 64 GAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 A VV+ + V ++ + GV+D AL LA R +I ITGS GKTT Sbjct: 63 EAVGAVVDNEQVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTT 122 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+++ L + KT G+YNN G+PLTL R+ + + EL M LG+I+ L + Sbjct: 123 TKDLVASVLETKFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGDIKTLCQI 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P I V+T + HL E IA AK+E+ E L TGT LN DD + + ++ A Sbjct: 183 AQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQMADETKA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + G + A V Q + + G + N L +G Sbjct: 243 EILYYGRESGNNLQASRV---DNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALAAVG 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L +++ + L+ + G R + TLI+++YNANP SM+A + +L Sbjct: 300 VGLKLGLNINEIQQGLAE---PDLTGMRGEIKELKDDITLINDAYNANPTSMEAGLDLLV 356 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 I G IAVLGDM E+G ++ H + + + I ++ G + + Sbjct: 357 DIGTDKGG-LIAVLGDMLELGSAAEEAHRQIGKKVINKKIDYLLTVGDLASLIGQEAKKL 415 Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S + + + + + D +++K S + LL Sbjct: 416 GMDSSRIFICDDNQEINRQLLQLIKPDDTILLKGSRGMKLEEVEKALL 463 >gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] Length = 470 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 123/476 (25%), Positives = 201/476 (42%), Gaps = 18/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ + + A+ G GI P V G ++ DSR + F A+ G DGHD++ Sbjct: 1 MIPV-SCGQIADAVGGELAGIDPAAVVTGAVAKDSREVVAGGLFVALPGERVDGHDYVPA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 + GA + + + P V D AL +LA + T+I +TGS G Sbjct: 60 VTEAGATVSLTTRPVD------GCPCIVVADTQVALGELARYVVAQLPELTVIGLTGSQG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ ++ T A GS+NN IG PLT + D + + E+G HLG+I +L Sbjct: 114 KTSTKDLIAQLVAPYGPTVAPTGSFNNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P + ++ + +H+ F + IA AK E+ + GT LN DD + ++ Sbjct: 174 CRITPPKVGLVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGTAVLNADDPRVAAMASR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + +TI +FG++ AD + + E L Sbjct: 234 T----EQTIRTFGEAPEADVRATDLEVDGEG-RPGFTLHADGQSFPVQLQLIGEHNVSNA 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L + A + R T+I+++YNANP S++AA+ Sbjct: 289 LAAATAALAVGLTPEQVADGLNAAARVSQARMEVVERPDGVTVINDAYNANPDSVRAALK 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L I E R AVLG+M E+G+ S + H + + +++ + G + Sbjct: 349 ALVAIGRAREARTWAVLGEMLELGDSSATEHDAVGRLAVRLDVNRLLAVGEGAKPIHLGA 408 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Y T+ ++ L GDVV+VKSS + L + LLE PA Sbjct: 409 SLEGSWGNESAYVATIAEALELLRGELRSGDVVLVKSSKAANLRSLADALLETAPA 464 >gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis XB6B4] Length = 470 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 147/481 (30%), Positives = 209/481 (43%), Gaps = 33/481 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T + + G G + G IDSR + F A+KG DGH FI + Sbjct: 4 MTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFE 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA V+ ++ G P V+ LGA+ KLA R ++ ITGSVGKT+T Sbjct: 64 KGALAVLSEQELSEPAG----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS G++NN IG+PLT+ ++ + + E+G+S GE+ L + Sbjct: 120 KEMIASVLSQKYNVLKTEGNFNNEIGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I VIT I HL N + I AK E FE L GT LN DD K Sbjct: 180 YPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTPEGTAVLNGDDDKLCE--KKMVNG 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQ--------------CSEQSWMEVQLQGKSMEVVHHGI 288 Y GK + K + + + + +S V Sbjct: 238 KPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L + + L VD + + GR +++G T+ID+ YNA Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS----NLIHKGGMTIIDDCYNA 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SMKA+I VL+ GR+IAVLGDM E+GE Q H + E I ++ +G Sbjct: 354 NPVSMKASIDVLA----AAPGRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAG 409 Query: 409 FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L A+ + VHY +T D L + + GD V+VK+S+ GF ++ L Sbjct: 410 ALSENLAQAVGKCSKETEVHYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQLT 469 Query: 466 E 466 + Sbjct: 470 K 470 >gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] Length = 473 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 133/477 (27%), Positives = 210/477 (44%), Gaps = 23/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +L + G I + +SI++R+++ + F AIKG +DGH F+ +A Sbjct: 1 MIKPLDLQNLSRRFGGEVINNSHAVNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVANA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +VV ++V +P + V D AL +A A R I+AITGS GKT Sbjct: 61 QNQGAIALVVEKEIV----DSDLPQWLVGDTTLALGHIAEAQRDNFLGKIVAITGSSGKT 116 Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 T K ML L +A G+ NNHIGVPL+L + + + E+G S +GEI++L Sbjct: 117 TVKGMLESILRVAVSDHVFATKGNLNNHIGVPLSLLSLKSQHQYAVIEMGASAVGEIQYL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +P +A+I + AH+ F I+ IA K EI+ GL G +N D + + Sbjct: 177 TQMAKPDVAMINNVMSAHVEGFGSIDNIAKGKGEIYNGLTNAGVAVINIADKYAPQWLEQ 236 Query: 239 SHALGIKTIYSFGKSKNADFQL--------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + NA ++ + + ++QL KS E+ +G Sbjct: 237 NSQRQTLLFSASTDVSNAMDMNSVANITATNVKQKHNGCAKFDLQLLEKSTEINLSVLGM 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N L L ++ + LS F GR + T+ID+SYNANP Sbjct: 297 HNVANALAASTCAYALNISIEDIAQGLSEFTGVAGRLHCLEGVND---STVIDDSYNANP 353 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 S AAI VLS +S + V+GDM E+G+ S S H + + NI + G Sbjct: 354 NSFCAAIDVLSDMSAKT----VLVMGDMAELGDDSDSEHEKIGRYANEKNIDLLLTLGRQ 409 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++++ L V+++K S S R++ L + Sbjct: 410 SEEASKVFSGDKQ--HFDSVEQLITVAVQQANKSTVLLIKGSRSSRMDRVVQALTQR 464 >gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 468 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 213/466 (45%), Gaps = 18/466 (3%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ +A+Q ++ P V G++ DSR + + F + G + DGH +I A++ GA Sbjct: 11 VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGA 69 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + +D + +PV V D L AL +L + ++A+TGS GKTTTK+M Sbjct: 70 VATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDM 128 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ ++NN IGVP+TL M + + + E+GM H GE+ FL+ LV+P Sbjct: 129 IASVLSTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPD 188 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT I AH+ F + IA AK EI GL++ GT N D+ L + + Sbjct: 189 VAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAKEVSQ 244 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG S + Q + + I A N+ L + + Sbjct: 245 HQRTFGLDDTNTLAGSDITT----SRAQTQFKTSLWPDNTYTIPMMGAYNVNNALAALLV 300 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A R ++ + YN+NP + + ++ + + Sbjct: 301 ADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAILSDVYNSNPTAARRVLAAFAAVP- 359 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 +G+RIAVLGDM E+GE S + H+ LA L I+ V+L+G H+ AL + L + Sbjct: 360 -TKGQRIAVLGDMLELGEQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAG 418 Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY +T L + +++ D V++K S+ +++ L Sbjct: 419 AVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTALEA 464 >gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] Length = 473 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 193/470 (41%), Gaps = 14/470 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D + G + P + ++ DSRS+ P + F A+ G +D HDF+ V + Sbjct: 2 MMHATDAAAWMAGAHLAG-PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ A++ ++ V V D L +LA R + ++A+TGS GKTT K Sbjct: 61 GAAAVLVSRPPAATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVK 120 Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM++ + A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 121 EMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAA 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A+I H +E +A A + L G D + Sbjct: 181 IAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPADGVAVYPRDAANGGEFAPVWQ 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A A +E ++VQ G+ + +G H A+N L Sbjct: 241 AAAGSRRV-LDFGIEAGAVTGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAAT 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +AL F P +GR + +ID++YNANP SM+AAI L Sbjct: 300 ACALAAGVAPEVIAQALGNFAPVKGR---LQRKQGTHGGLVIDDTYNANPDSMRAAIDAL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + R VLGDM E+G +FH ++ I V +G DA Sbjct: 357 ATLPA----PRWLVLGDMGEVGSQGPAFHEEIGAYARTRGIDAVLATGELARHTVDAFGA 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ V+VK S R++ L+ + P Sbjct: 413 G--AQHFASAEDLIEHGLGAIAPAATVLVKGSRFMRMERIVEALVLKDPV 460 >gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] Length = 459 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 222/473 (46%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + +L ++G IG F++ +S DSR++ Q F A+KG ++DGH F A Sbjct: 1 MISV-SLSELATRLKGQLIGD--DLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ ++ V++ A+ ++ R + T +A+TGS GKT Sbjct: 58 VDAGANALLVEREL-----PINATQLIVNNSQKAMGEIGAYVREQVAPTCVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS + G++NN IGVPLTL R+ +FG+FELG +H GEI + + Sbjct: 113 SVKEMIATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F +E +A AK+EIF + GT +N DD+F +++ S Sbjct: 173 LVKPSVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHISTGGTAVINADDAFADVMLQASS 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++ + + + V G H N L Sbjct: 233 HVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRVELPLAGRHQVSNALA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I L + + LS+ P +GR + G T+ID+SYNANPAS+ AAI Sbjct: 293 ATSICIALGLSLPLICQGLSLLQPVKGRMLPSQ----LGRVTVIDDSYNANPASVGAAID 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +I G R VLGD+ E+G+ + H +L E+ +S ++ G A Sbjct: 349 WLQEIK----GNRCLVLGDLGELGDNAALLHRELGELAKAKGVSALFCVGTLSEGASHAF 404 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468 + +DGL + + + V+VK S S R++ L + Sbjct: 405 GSK----HYHDIDGLVAGLVQYINELPADITVLVKGSRSARMERVVEALTTAY 453 >gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] Length = 460 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 226/468 (48%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L Q + H +G + +S DSR I P F A+KG +DGHDF A Sbjct: 1 MIPI-SLEALSQHLSAHRVGD--DVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + +P V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAVALLVEREL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ + +G+FELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRPH+A++ + AHL F +A AK+EI+ L+ GT +N DD+F +++ KAK Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAK 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + + D K SE + + G+S EV G H N L Sbjct: 233 QYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQ----LGRIRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 H + ++ L I G V V+VK S S R+++ L Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450 >gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] Length = 460 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 226/468 (48%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L Q + H +G + +S DSR I P F A+KG +DGHDF A Sbjct: 1 MIPI-SLEALSQHLSAHRVGD--DITIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + +P V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAVALLVEREL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ + +G+FELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRPH+A++ + AHL F +A AK+EI+ L+ GT +N DD+F +++ KAK Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAK 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + + D K SE + + G+S EV G H N L Sbjct: 233 QYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 H + ++ L I G V V+VK S S R+++ L Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450 >gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 444 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 21/463 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T DLL A G + + SID+R+I + FFA+KG DGH+F+ A+ K Sbjct: 1 MFTLDDLLIATGGKLVSKGNEI-FKEASIDTRTIGKNDLFFALKGSKKDGHEFVDEALIK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A VV+ + + + V VDD L +L LA R + K IIA+ GS GKTTTK Sbjct: 60 -ASGAVVSKN--EGMDFKNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ LS K G++NN+IGVPL ++R+ + + + ELG + G+I+ L +V Sbjct: 117 ELIASFLSKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKELCDIVY 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A+IT I H+ F I+ + G + + + Sbjct: 177 PDYALITNIGYEHIEGFGSIQGVRE-------GELEILPYVKTVFANGDDKFLMDGLKRY 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG SK DF+ ++ + + V +G + N+ + + Sbjct: 230 SGQILTFGMSKECDFRAENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNLTGAIAVA 289 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + L + + F + RG+ + + ++YNANP+SMK A + Sbjct: 290 TFLGISKCSIQQITESFTSVKMRGEIIKING----VEIFFDAYNANPSSMKVA--LQELT 343 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 R +AVLGDM E+GE + H ++ + ++ I G +K+AL R ++ Sbjct: 344 RRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFIGVG---KFIKNAL-RYVN 399 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + F++ L ++V++K S + +++ +L E Sbjct: 400 GYVFNDPIQAAEFLKKELKGSEIVLIKGSRAMKLEKILEILKE 442 >gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodopseudomonas palustris DX-1] gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodopseudomonas palustris DX-1] Length = 479 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 193/467 (41%), Positives = 259/467 (55%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A+ G +P+ GISIDSR++AP +A+FAI+G +DGHDF+ A+ Sbjct: 5 PLWTSDAMAEAMAATRSGTLPRDVF-GISIDSRTLAPGDAYFAIRGDVHDGHDFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV + P+ VDDVL L +L +AAR R A +IA+TGSVGKT+T Sbjct: 64 AGAALAVVEKAQRDKFAA-DAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + T+A + S+NNH GVPLTLAR P V + +FE+GM+H GEI L +V Sbjct: 123 KEGLRSVLGAQGPTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+ P HL FSG+E IA AK+EIF GLE G LN D F+ L A + Sbjct: 183 RPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMFDRLSANALRA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + I +FG AD +L ++ S + + G + G HMA N L L Sbjct: 243 NVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ AD+ A A+S P GRG R + G TLIDESYNANPASM AA+ VL + Sbjct: 303 AELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLGR 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +GRRIAVLGDM E+G + H L + I V+ G + L DAL Sbjct: 363 AEIGAQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ L + +++ GD V+VK S +IN + + FP Sbjct: 423 RGGYAGDATALESQVVAAIRAGDAVMVKGSLGSRMKTIINAIEKRFP 469 >gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 458 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 189/473 (39%), Gaps = 21/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + A G P V G++ DSR P + F A+ G DGHDF A Sbjct: 1 MQPL-SLAQIATATGGRVTDADPATQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 V+ GA V+ L +P V+D L AL A A +IA+TGS GK Sbjct: 60 VEAGAVAVLAARP-------LGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK+++ L T GS+NN IG+PLT D + E+G G I +LT Sbjct: 113 TSTKDLIAQVLDRAGATVFTQGSFNNEIGLPLTALEATADTRHLVVEMGARGQGHIAYLT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSFFELLK 236 + P I + + AH F G + A AK E+ + G LN DD + Sbjct: 173 GITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMS 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A++ A + +FG + AD + L + + Q Sbjct: 233 ARTKAEVV----TFGVERAADVYATGVAL-DGRGRASFTLHTPAGQAPVRLQVVGEHQVP 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 A +D ++ R R T++D++YNAN S AA Sbjct: 288 NALAAAAVAGAAGMDVEQIGGALTAAVPVSEGRMRVTERPDGVTVVDDAYNANTDSTSAA 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALK 415 + L+ + GR IA+LG+M E+G+ S+ H + + + + + G AL Sbjct: 348 LRALAHLGRESGGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVGRAEAHALA 407 Query: 416 DALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467 D V D +++ L GDVV+VK +N+ L + L Sbjct: 408 DEYGPGGQV--VADRDAAGEWLERYGLRAGDVVLVKGANALKLGELADALAAR 458 >gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CMR15] Length = 485 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 122/474 (25%), Positives = 193/474 (40%), Gaps = 19/474 (4%) Query: 4 LWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + D + H +G P + ++ DSR++ P + F A+ G +D HDF+ V Sbjct: 8 MMHATDAAAWMAGAHLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVA 65 Query: 63 KGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +GA V+V+ DM + V V D AL +LA R R ++A+TGS GK Sbjct: 66 RGAAAVLVSRRLADMPDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGK 125 Query: 120 TTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 TT KEM++ + A G+ NN IG+PLTL R+ + ELGM+H GE Sbjct: 126 TTVKEMISAVFACAVGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETE 185 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + +P +A+I H +E +A+ A + L G D + Sbjct: 186 VLAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYA 245 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + ++V +G H A+N Sbjct: 246 PLWRAAAGTRRV-LDFGIEGGAVSAAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNA 304 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + +ALS F P +GR + +ID++YNANP S++AA Sbjct: 305 LAATACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGHHGGLVIDDTYNANPDSVRAA 361 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I L+ + R VLGDM E+G +FH ++ I V +G L + + Sbjct: 362 IDALATLPA----PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELTLHMVE 417 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 A + + + L ++ G V+VK S R+++ L+ + PA Sbjct: 418 AFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 469 >gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum CECT 5716] Length = 459 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 214/469 (45%), Gaps = 19/469 (4%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + Sbjct: 3 MSLAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D P VDD L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAKATLWAKDHPYDPAD-GYPRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AH+ F ++IA AK EI GL + GT + D+ L + A Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKL 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG+ + D + Q +G + N L + + Sbjct: 237 SQQTKTFGRQLDDDLYATSVNPDVDHVS-FTVNQWPDEVFTIPLVGEYNVNNALAAMTVG 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ +AL E R ++ + YN+NP ++K ++ L+ I Sbjct: 296 KLMHVTPANMKQALQN---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G+R+AVLGDM E+GE S H L + + ++ V+L G + ALKDAL ++ Sbjct: 353 PV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410 Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H + + L +Q+SL GDVV++K+S+ +++ L + Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459 >gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 456 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 199/471 (42%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ + G G + V + DSR F I G D H FI Sbjct: 1 MKNL-TLENIARVCGGTYYGPADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++ GA + + + P V+ L A+ +A + + ++ ITGSVG Sbjct: 60 QVMEAGALATLSER----VLDNADFPYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L+ T G++NN +G+PLT+ R+ + + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLNQKYHTLKTQGNFNNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP VIT I HL N + AK EIF+ L G I LN DD +K Sbjct: 176 AQIARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRPEGHIVLNGDDDKLITVKEY 235 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + S D + + + + L + V G HM N L Sbjct: 236 EKIKPVFFGMSNECQVYGD---KIVSRGLKGMTCTIHLGDTAFTVDIPMPGRHMVYNALA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + +I D + P GR + F ++D+ YNANP SMKA++ Sbjct: 293 AAAVGNIYGLTTDQIKAGIESLEPISGRFRMIE----TDKFLIVDDCYNANPMSMKASLD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL G GR+IAVLGDM E+GE H ++ E +I + +G + + Sbjct: 349 VLQD----GAGRKIAVLGDMGELGENEVQLHEEVGEHAGKCDIDVLICTGKLCRNMAERA 404 Query: 419 PR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 R + V Y + L ++ + DGD ++VK+S+ F ++ L Sbjct: 405 QRTNPDLKVIYEPDRESLLEHLEGYVQDGDTILVKASHFMKFEEVVTKLEN 455 >gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] Length = 451 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 203/466 (43%), Gaps = 16/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I + + G++IDSR + + F KG + DGH F+ A Sbjct: 1 MIEV-SLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG S+ P+ VDD L AL +LA A +I +TGS GKT Sbjct: 60 LKDGAGASFYEK-GQDISDSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ L + + G+YNN IG+PLT+ ++ D + I E+GMS EI L+ Sbjct: 119 TTKDMIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSK 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IAVIT I +H+ + E IA AK+EI GL+ GT + D+ LLK Sbjct: 179 IAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEP---LLKPHVE 235 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + S G + + ++ + + + NM Sbjct: 236 NVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYELPIL------GIHNMKNAT 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++I + G R + T+I+++YNA+P SMKAAI L Sbjct: 290 IAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + GR+I VL D E+GE SQ H D+ L I + G + Sbjct: 350 SHM----NGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGNDAKFISRTGGH 405 Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V Y + L +++S L D V++K S ++N L+ Sbjct: 406 FVEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451 >gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 454 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 118/468 (25%), Positives = 212/468 (45%), Gaps = 21/468 (4%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58 M + L + I G ++G+ IDS+++ F I DGHD++ Sbjct: 1 MIQM-NLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNLFVPII--RVKDGHDYVK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA + +P+ VD+ L AL +LA R +I ITGS G Sbjct: 58 EAMDNGAVASLWKKSYG--TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT K+++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G+IR L Sbjct: 116 KTTVKDIIESILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGQIRNL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P +AVIT I +HL +EIA AK EI +GL + G N D+ L ++ Sbjct: 176 SRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSR 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ +FG+ D + ++ +V HG + + Sbjct: 232 NNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGI 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + K R++ + FT+I++++NA+P+SMKAAI Sbjct: 292 AV-----GQFYKVPTEKIQEALQQINITQMRFQFLTAKKGFTIINDAWNASPSSMKAAIE 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +++ + + I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEA 404 Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 ++ V + + + + DVV++K S ++ Sbjct: 405 RKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIVQK 452 >gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 459 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 214/469 (45%), Gaps = 19/469 (4%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + Sbjct: 3 MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D P VDD L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AH+ F ++IA AK EI GL + GT + D+ L + A Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKL 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG+ + D + Q +G + N L + + Sbjct: 237 SQQTKTFGRQLDDDLYATSVNPDVDHVS-FTVNQWPDEVFTIPLVGEYNVNNALAAMTVG 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ +AL E R ++ + YN+NP ++K ++ L+ I Sbjct: 296 KLMHVTPANMKQALQN---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G+R+AVLGDM E+GE S H L + + ++ V+L G + ALKDAL ++ Sbjct: 353 PV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410 Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H + + L +Q+SL GDVV++K+S+ +++ L + Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459 >gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] Length = 463 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 143/468 (30%), Positives = 217/468 (46%), Gaps = 14/468 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + D + + G G+S D+R IA + F A++G ++DGHD++ Sbjct: 1 MMRPFALADAVNWLGGTVAVGDLDGLMFQGVSTDTRRIASGDVFVALRGENFDGHDYLAV 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA VV+ + S+ +P V D + AL +LA+A R S A +AITGS GK Sbjct: 61 AEKAGAVAAVVDK----ADPSMGLPQIRVSDTIDALAQLALANRNASTARFVAITGSSGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT +EM+ LS + T A G+ NNHIGVPLTL R+ + G ELG S LGEI Sbjct: 117 TTVREMVAAILSQVGNTLATEGNLNNHIGVPLTLFRLSPEHQLGAIELGASGLGEIAHTV 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++VRP + ++T AHL F G + + AK EI +G +TG + LN DD F+L + ++ Sbjct: 177 NIVRPEVVILTNAGQAHLEGFGGYDNVVRAKGEIIDGAPETGLVVLNSDDPAFDLWRQRA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + + G S +V G H N L+ Sbjct: 237 GQRRVAGVSGRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLA 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L AD + L+ P +GR + + T+ID+SYNANPASMKAA+ V Sbjct: 297 IAAARELGADNEAIKAGLAALKPVKGR---LQMMVLTPKLTVIDDSYNANPASMKAALDV 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ +AVLG M E+G+ S + H ++ E I + G + Sbjct: 354 LAARPASR----VAVLGAMAELGQDSLALHREIGEFARARGIERLIAVGPGCEGYVEGFG 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + V + D + + V+VK S S R++ + E+ Sbjct: 410 DAAEV--CASHDDAVRRLFEGPAESQTVLVKGSRSSAMDRVVEGIQEK 455 >gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] Length = 456 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 134/468 (28%), Positives = 217/468 (46%), Gaps = 18/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T + + G + +NG+S DSR++ + F +KGP+YDGHD++ A Sbjct: 1 MN--LTSDQVATIVGGRRLAAATDPEINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA + +G L +PV V+D L AL +LA R ++A+TG+ GKT Sbjct: 59 VEHGAAACLSE----EVVGGLPVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTTGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L+ G++NN IG+PLTLAR+ + + + ELGMS GEI LT Sbjct: 115 STKEMLASILAQGSDGLKTEGNFNNLIGLPLTLARLSDEHRWMVLELGMSQHGEIERLTE 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A+IT + HL+ IE +A AK E+F GL+ + + L A Sbjct: 175 IAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSGLKAG----ATAVVNRDDALIAALP 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + F + + + S+ + V G H N L Sbjct: 231 IPDGVRVIDFSLTYQTQVRATSIDSGQQASFTLHV-GESQVRVELPLPGRHQVYNALAAA 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ L + R T++D+SYNANP SM+AA+SVL Sbjct: 290 AAAHAVGCSLEQIATGLGC---VKMAAGRLEVRTLPHGATVLDDSYNANPQSMQAALSVL 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419 S +G +IAVLGDM E+G++SQ+ H +L + + V G A+ + Sbjct: 347 SDWP--CQGTKIAVLGDMLELGDVSQACHEELGRLAAQRA-EQVLCYGDWAAAVLKGVVE 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D + +++ + + D ++VK S ++++ LL + Sbjct: 404 QGGQGAICTSHDEILDWLERQVREDDCILVKGSRGMRMEKVVHALLAQ 451 >gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 459 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 214/469 (45%), Gaps = 19/469 (4%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + Sbjct: 3 MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D P VDD L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AH+ F ++IA AK EI GL + GT + D+ L + A Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKL 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG+ + D + Q +G + N L + + Sbjct: 237 SQQTKTFGRQLDDDLYATSVNPDVDHVS-FTVNQWPDEVFTIPLVGEYNVNNALAAMTVG 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ +AL E R ++ + YN+NP ++K ++ L+ I Sbjct: 296 KLMHVTPANMKQALQN---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 G+R+AVLGDM E+GE S H L + + ++ V+L G + ALKDAL ++ Sbjct: 353 PV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410 Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H + + L +Q+SL GDVV++K+S+ +++ L + Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459 >gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 477 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 166/478 (34%), Positives = 244/478 (51%), Gaps = 21/478 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + +A G G NG+SID+R++ P + F A+K DGH+F+ A Sbjct: 1 MS-LWTATEAAEATGGRVQG---DWACNGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVG 118 + GAG +V V P+ V+DV AL L A R R +A + A+TGSVG Sbjct: 56 LDSGAGAALVTH--VPEGVGEDAPLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEML K +A + SYNNH GVPLTLARMP D D+ + E+GM+H GEI L Sbjct: 114 KTSTKEMLLAIFGDQGKAHASVDSYNNHWGVPLTLARMPRDTDYAVIEIGMNHPGEIAPL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +PH A++T +A HL F + IA KA IF+G+E G +N D +++ K Sbjct: 174 AKQAQPHAAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPGGVAVINADHDHSDIVLDK 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G+ +FG+ + + L K E + + ++ G + G H A N L Sbjct: 234 ALERGL-RETTFGRKGHH-YTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALG 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMK 354 L + L AD A+++L + P GRG R + N LID+SYNANP SM Sbjct: 292 ALAVAEALGADRALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMA 351 Query: 355 AA------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 AA V I +GRRIA +GDM E+G + + H LA++ + + V G Sbjct: 352 AALEVLAASEVTHDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVG 411 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + A D LP ++ET + + +++ L GDVV++K S S +++ + + Sbjct: 412 PLMKAFYDNLPEHQRGDWTETAEEMLQGLRARLDSGDVVLIKGSLSMKLGSIVDAIRK 469 >gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 465 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 120/466 (25%), Positives = 203/466 (43%), Gaps = 15/466 (3%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +++ + I + + G+ IDSR + + I G +GH ++ A+ G Sbjct: 5 SIDAIIRMLDADYIENGAIEEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + V V+D AL LA A R + ++ ITGS GKT+TK+ Sbjct: 65 AKAVLWERK--EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L L T +G+YNN IGVPLTL + +V+ + E+GM +LGE+ FLTH+V P Sbjct: 123 ILASLLQEHYITQKTLGNYNNEIGVPLTLLSLSENVEAAVIEMGMENLGELSFLTHMVEP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+I+ + AHL N +E IA AK EI EGL++ G N D + ++ G Sbjct: 183 DIAIISNVGTAHLENLKTMENIAKAKLEIVEGLKEHGLFIYNGDQEILQNAVTQAQIPGH 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I +FG D+ + Q E + V G M Sbjct: 243 IRIRTFGVKPQNDYVISHITQKREGVSFCLNDDVCPYHVDMIGKHQAMNATAAWIAAKAL 302 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L+ + ++ G ++++SY +NP S AA+ + + Sbjct: 303 GLSVEEIREGYQNIEKTGLRNE------LVDFGNCLILNDSYKSNPQSALAALDTMEEFD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 + IAVLGDM E+G+ S H L + L+ Y+++ V G + Sbjct: 357 VPYK---IAVLGDMLELGDTSDMIHYTLGKDLAKYHLNEVLTIGDMARYITQGAFNNLTG 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +H+ + + L +++ +++VK S +++ L+++ Sbjct: 414 VHIEHFTDKEALICYLRPYEHKDCMLLVKGSRGMKLDEVVDALVKK 459 >gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] Length = 468 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 136/470 (28%), Positives = 208/470 (44%), Gaps = 17/470 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +++QA G IG V+G+S DSRS+ + F A+KG +DGH+FI A+ K Sbjct: 1 MLSIDEIIQATGGTLIGSGG-KMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAK 59 Query: 64 GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G +V D +A+ + V + L AL LA R + +I ITGS GKTTT Sbjct: 60 GVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L G+ NN IG+PL L RM + + E+GMS GEI L + Sbjct: 120 KEMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT AHL++ +E +A AK E+F+ L+ G N DD L ++ Sbjct: 180 EPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDP----LISRLPTA 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG E ++L + V G H N L Sbjct: 236 AGVSRLSFGLRGAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNIYNALAAAAA 295 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D T L F P + G LID+SYNANPAS+ AA+ L Sbjct: 296 AHAIGLDHQTIRAGLEEFTP----YDKRFHVEQVGDIVLIDDSYNANPASIAAALVTLKD 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 I R IAVLGDM E+G + + H ++ +L+ + +++ G + + Sbjct: 352 IRQQN--RAIAVLGDMLELGSGAPAAHREVG-LLAATCVERLYVMGEYAETVAAGAVDGG 408 Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 H++ + + + ++ + GD ++VK S ++ + F Sbjct: 409 MGADHIYVAGSHGEIVEDLRRKVTKGDNILVKGSRGMHMDKVAEAIRNGF 458 >gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium chloromethanicum CM4] gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium chloromethanicum CM4] Length = 487 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 187/475 (39%), Positives = 267/475 (56%), Gaps = 10/475 (2%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+ PLWT L A G IG V G SID+RS+ P + FFAI+G DGHDF+ Sbjct: 1 MSDAPLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113 A+ KGAG VV + V V D VL A+ +L +AAR R++A I+A+ Sbjct: 59 AALDKGAGAAVVAEARAKEFEGVG-SVLAVPGEGDDPVLDAMRRLGLAARARTEAAIVAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT TKE L LS+ T+A + SYNNH GVPLTL RMP FG+FE+GM+H Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNHGA 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D+ +E Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L A + A + +FG+ AD + + + S ++ + G + G H+A Sbjct: 238 RLLAHAQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVA 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L L + L AD+ A +L+ P GRG+R + G L+DESYNANPAS+ Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA++ L+ I +GRRIAVLGDM E+G ++ H +LA+ ++ I V+ G + Sbjct: 358 RAALATLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +ALP ++ + T +G+ + ++L GD V+VK SNS R++ + + Sbjct: 418 LFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472 >gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC 27064] gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 479 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 130/479 (27%), Positives = 197/479 (41%), Gaps = 26/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G S I V G + DSR + P F A G DGHDF Sbjct: 1 MIAL-SLAEIAAIVGGQSYDIPDADRLVTGPVVTDSRRVGPGSLFTAFAGERADGHDFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV GA V+ + +P VDDV AL LA R T +A+TGS G Sbjct: 60 RAVADGAVAVLATRP-------VGVPAIVVDDVTAALGALARHVVERLGTTTVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T G+ NN IG+PLT R + + E+G ++G+IR+L Sbjct: 113 KTSTKDLIAQLLERKGPTVYPEGNLNNEIGLPLTALRADESTEHLVLEMGARYIGDIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDSFFELL 235 T LV P I ++ + AHL F E IA AK E+ E L LN DD + Sbjct: 173 TGLVPPRIGLVLNVGTAHLGEFGSRERIAEAKGEMVESLPSGEEGGVAVLNADDPLVRAM 232 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ A + FG+ +AD + + + V + Sbjct: 233 AERTRA----RVVLFGEHSSADIRAANVRLTRQGRPAFTLHTPTGCSDVTMRLY-GEHHV 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + AL++ R T+++++YNANP SM+A Sbjct: 288 SNALAAAAVAHELGLSADEIALALSEAGTLSRWRMEVTERPDGVTIVNDAYNANPESMRA 347 Query: 356 AISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411 A+ L+ + + GR AVLG M E+G+ + + H + + N+S + G Sbjct: 348 ALRALAAMGQGAQSRGGRTWAVLGLMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREA 407 Query: 412 LAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L + + ++S L GDVV+VK+S S G R+ LL+ Sbjct: 408 SWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLERVAQALLD 466 >gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 460 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 114/462 (24%), Positives = 209/462 (45%), Gaps = 18/462 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + G + ++G+ IDS+++ F I DGH+++ A+ Sbjct: 10 MNLKKLEEVVNGEGLQESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + IP+ VDD L AL +LA R +I ITGS GKTT K Sbjct: 69 GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LSS K + G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + + Sbjct: 127 DIIGSILSSTYKVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I +HL +EIA AK EI + L + G N D+ L ++++ Sbjct: 187 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDWLRENGLFLYNGDEP----LLSRNNKTS 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +FG+ D + ++ +V HG + + + Sbjct: 243 SVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 299 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K R++ + FT+I++++NA+P+SMKAAI L ++ Sbjct: 300 --GQFYKVPIEKIQEALQQINITKMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + + + V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ Sbjct: 358 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYH 415 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + + + + DVV++K S ++ Sbjct: 416 TGKIKSFDNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 457 >gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces albus J1074] gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] Length = 474 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 204/477 (42%), Gaps = 23/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G I V G + IDSR AP F A G DGHD+ Sbjct: 1 MIAL-SLAEISSIVGGQPADIPDLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV+ GA V+ + +P VDDV AL LA A R T++A+TGS G Sbjct: 60 TAVETGAVAVLATRP-------VGVPALVVDDVERALGALARAVVERLGTTVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L+ + T GS NN IG+PLT R D + E+G +G IR+L Sbjct: 113 KTSTKDLVAQLLTRVAPTVWTPGSLNNEIGLPLTALRAEADTRHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I V+ + AH+ F G E+IA AK E+ E L + G LN DD + + ++ Sbjct: 173 TGLTPPRIGVVLNVGSAHIGEFGGREQIAQAKGELVEALPEDGVAILNADDRYVRDMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + +FG++ AD + + L S Y Sbjct: 233 TKA----RVVTFGEAPEADIRAENVRLTENG-RPAFTLHTPSGCGDVTMRLYGEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ + R T+++++YNANP SM+AA+ Sbjct: 288 LAAAAVASELGMPVDEIAQALSEAESLSRWRMEVTERPDGVTIVNDAYNANPESMRAALR 347 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L + GR AVLG M E+G+ + + H + + N+S + G L Sbjct: 348 ALVAMGGARRGEGGRTWAVLGQMAELGDEALTEHDAVGRLAVRLNVSKLVAVGGREAAWL 407 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++S L GDVV+VK+S S G ++ LL + Sbjct: 408 QMGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAAALLAD 464 >gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] Length = 483 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 127/485 (26%), Positives = 193/485 (39%), Gaps = 38/485 (7%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G V+ + IDSR F AI+G DGH FI ++ Sbjct: 14 MSLQEIAAACGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVME 73 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA V D +G + V AL +A R ++ I+GSVGKT+T Sbjct: 74 QGALCAVSEED----LGDVPYSYIKVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTST 129 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS G++NN IG+PLT+ + + + + E+G+S E+ L + Sbjct: 130 KEMIASVLSQKYSVLKTEGNFNNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVA 189 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I V+T I AH+ N + I AK E+F + + GTI LN DD L+ S Sbjct: 190 RPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNENGTIILNGDDD---KLRGYSPEN 246 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI +Y + + + S + G HM N L + Sbjct: 247 GITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAV 306 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + P GR R FT+ID+ YNANP SMKA++ VL+ Sbjct: 307 GYALGMTDREICAGIEANVPIAGRNNLIR----APHFTIIDDCYNANPTSMKASLDVLAF 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 A+LGDM E+GE + H ++ I + G + + D Sbjct: 363 ADTRKA----AILGDMFELGENEKQMHREVGIHAVRKGIDVLICIGSLMKSAADGALEYL 418 Query: 421 -------------------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + + T + L +GD V+VK+S+ F ++ Sbjct: 419 EQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKEGDTVLVKASHGMEFPEIV 478 Query: 462 NLLLE 466 L + Sbjct: 479 EFLQQ 483 >gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Paenibacillus polymyxa SC2] gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus polymyxa SC2] Length = 467 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 215/468 (45%), Gaps = 16/468 (3%) Query: 6 TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63 T + G + V G+ DSR F + G +DGH ++ ++ Sbjct: 4 TIGQIASMCGGTLHAEADAERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSER 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D A ++ V+D L AL LA A + +++ ITGS GKTTTK Sbjct: 64 GATAYLWQKDHGAPP---TVNAIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L + K + G+YNNHIG+PLT+ MP D D + E+GMS GEIR L ++ + Sbjct: 121 DIVNALLGTTFKVHKTEGNYNNHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQ 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I +HL EIA AK EI G++ G + N D+ + A+ + Sbjct: 181 PDVAVITNIGESHLLQLGSRTEIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVK 240 Query: 244 IK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +++FG + + D + E S + Q +G H N L L Sbjct: 241 PEGLELFTFGLAADNDDYPTEITSDGEGSL-FITAQSGQEAFRLPLLGQHNVVNGLAALA 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D D K LS + G R T+++++YNA+PASMKAAI LS Sbjct: 300 VARHFNVDADHIRKGLS---SLKLTGMRIEVVKCSDGLTVLNDAYNASPASMKAAIQTLS 356 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 GR+IAVLGDM E+G + FH ++ + +NI ++ G ++ Sbjct: 357 AY--KTGGRKIAVLGDMLELGAEEKQFHEEIGRFAAKHNIEALFTYGALGASIAQGAQGT 414 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +VH L ++S L D+V+VK+S +++ L Sbjct: 415 MPTANVHAYTDKQKLIQHLRSYLHADDIVLVKASRGMRLEEIVDALKN 462 >gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E] gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E] Length = 461 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 130/478 (27%), Positives = 211/478 (44%), Gaps = 29/478 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + Q ++ IG + +S D+R P FFA+KG +DGH+++ A Sbjct: 1 MIKL-NVKKIAQILKAKLIGE-ETLTIESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +G VVV+ + +P V D AL +LA R + +AITGS GKT Sbjct: 59 VAQGCTAVVVDHPC-----EIDVPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L G++NN IGVPLTL R+ ++ + ELG +H GEI Sbjct: 114 TVKEMTAAILQRTAGDDEAVLFTEGNFNNDIGVPLTLLRLTEKHEYAVIELGANHAGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + HL P +A++ ++ AHL F +E +A AK EI+ GL G LN D ++ Sbjct: 174 YTAHLTMPDVALVNNVSAAHLEGFGSVEGVAQAKGEIYSGLTPDGVAILNLDSNYAHYWG 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + ++ AD+ K S + ++++ +G H N Sbjct: 234 GDINDREFESFAY--DHVGADYYAEKIMLSEYGSRFTLNTPKGAIKIELPYLGKHNVANA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + + A ++ + L +GR + + N L+D++YNAN AS+ Sbjct: 292 VAASALAMNVGASLEDIKRGLENPSHVKGRLFPIQLSTN---LLLLDDTYNANVASV--- 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 S +S +S + E RI GDM E+G+ + S H ++A+ N+ V G + Sbjct: 346 KSAISVLSDYREAFRIFAFGDMAELGDETISCHQEVADFAKAANLDLVVTYGSESAVVSK 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468 A + + L ++ + + D+V++ K S S +IN L + F Sbjct: 406 A----CGGVHFSNKEALIASLKEIISHQLKENEDIVLLAKGSRSMKMEDVINSLKDRF 459 >gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] Length = 460 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 225/468 (48%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L Q + H +G + +S DSR I P F A+KG +DGHDF A Sbjct: 1 MIPI-SLEALSQHLSAHRVGD--DVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V + + +P V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAVALLVERQL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ + +G+FELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRPH+A++ + AHL F +A AK+EI+ L+ GT +N DD+F +++ KAK Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVKAK 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + + D K SE + + G+S EV G H N L Sbjct: 233 QYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 H + ++ L I G V V+VK S S R+++ L Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450 >gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] Length = 475 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 180/467 (38%), Positives = 261/467 (55%), Gaps = 5/467 (1%) Query: 1 MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M LWT + + A G +G +G++ID+R++ P + F A+ G DGHD++ Sbjct: 1 MTAVLWTRAEAVVATGGTPLGR--DWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQ 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+Q GA +V+ + + S P+ V D L L +L AAR RS A I A+TGSVGK Sbjct: 59 ALQTGASAALVSR--RPADLAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T +KEML AL++ T+A G+ NNHIG PL+LAR D F +FELGM+H EIR L+ Sbjct: 117 TGSKEMLAAALAAYGTTHASKGNLNNHIGAPLSLARFSRDAAFAVFELGMNHPEEIRPLS 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LVRPH A+IT + H F+GIE+IA AKAEIF+GLE GT+ LN D+S F L + Sbjct: 177 RLVRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 L I+ I FG +A+ +L + ++ ++ G+ M GIG H A N L Sbjct: 237 GRLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGV 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L D + AL GRG + + +L G TLIDESYNA+P +++AA++V Sbjct: 297 AATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPPAVRAALAV 356 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ P RRIAVLGDM E+G + H LAE + V+L G + AL ALP Sbjct: 357 FAETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFLVGPEMAALAAALP 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ ++++ + L + +++ GDVV+VK S +++ L Sbjct: 417 AALVAGHADSSEALAATVAAAVAPGDVVLVKGSLGMRMKAIVSALEA 463 >gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 455 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 212/472 (44%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + +N I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D+ P V+D L A LA + + +IA+TGS GKT+TK Sbjct: 62 GAVAIFSEKDLPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M++ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + R Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G++ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDSYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + + E+ + + V G + A N ++ + Sbjct: 233 ---VIRFGDHQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420 + + G++IAVL DM E+G S + H L + LS I + G + L Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV + + + + +Q L D +++K SNS G +L+N L+E Sbjct: 403 EGHVQFFRKNQQADQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNRLVE 454 >gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS155] gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella baltica OS155] Length = 460 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 142/470 (30%), Positives = 227/470 (48%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + +G + +S DSR I F A+KG +DGHDF A Sbjct: 1 MIPL-SLETLSQHLGMFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ +FGIFELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F + + KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + ++ D K ++ + + G+S +VV G H N L Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L ++ + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLNLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464 + +++ L + + G V V+VK S S R+++ L Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450 >gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 460 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 130/470 (27%), Positives = 214/470 (45%), Gaps = 19/470 (4%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +AI + I + ++ DSR + F ++G DGH ++ A Sbjct: 3 MKLAEIAKAIGAENNIEQWKDVEITSVAFDSRQLDSGALFIPLQGAQ-DGHQYVESAFAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +D + P+ VDD L +L +L+ + ++A+TGS GKTTTK Sbjct: 62 GAVATLWASDHDVTTTE-DQPILVVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M LS+ ++NN IGVP+TL M + + E+GM G++ FL+ LV Sbjct: 121 DMTASILSTQLNVTKTHANFNNEIGVPVTLLNMESSTEVVVVEMGMDRPGQLDFLSKLVS 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AVIT I AH+ F ++IA AK EI GL++ GT N D+ L + A Sbjct: 181 PDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAANV 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG+ DF Q E S + E +G + N L + + Sbjct: 237 EQRKVTFGRQLTDDFYATSVNQ-HETSIDFKVNEWPDEEFTIPMVGEYNVNNALAAIAVG 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L KAL E R ++ + YN+NP + K + + ++ Sbjct: 296 KQLHITPAHIKKALKN---VELTENRAEWVNGAQGERILSDVYNSNPTAAKQVLKTIEEL 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G+RIAVLGDM E+G+ S H LA + I V+L G + L+DAL + + Sbjct: 353 P--TTGKRIAVLGDMLELGDASARLHASLAANIDPKKIEEVYLVGSEMENLQDALEKQGY 410 Query: 424 ----VHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +H+ T +D L + +Q+++ D+V++K+S+ +++ L + Sbjct: 411 PASAIHHYSTAELDKLVVDLQATISADDLVLLKASHGIHLEKVLAELTTK 460 >gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] Length = 473 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 127/485 (26%), Positives = 193/485 (39%), Gaps = 38/485 (7%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G V+ + IDSR F AI+G DGH FI ++ Sbjct: 4 MSLQEIAAACGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA V D +G + V AL +A R ++ I+GSVGKT+T Sbjct: 64 QGALCAVSEED----LGDVPYSYIKVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS G++NN IG+PLT+ + + + + E+G+S E+ L + Sbjct: 120 KEMIASVLSQKYSVLKTEGNFNNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I V+T I AH+ N + I AK E+F + + GTI LN DD L+ S Sbjct: 180 RPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNENGTIILNGDDD---KLRGYSPEN 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI +Y + + + S + G HM N L + Sbjct: 237 GITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAV 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + P GR R FT+ID+ YNANP SMKA++ VL+ Sbjct: 297 GYALGMTDREICAGIEANVPIAGRNNLIR----APHFTIIDDCYNANPTSMKASLDVLAF 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 A+LGDM E+GE + H ++ I + G + + D Sbjct: 353 ADTRKA----AILGDMFELGENEKQMHREVGIHAVRKGIDVLICIGSLMKSAADGALEYL 408 Query: 421 -------------------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + + T + L +GD V+VK+S+ F ++ Sbjct: 409 EQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKEGDTVLVKASHGMEFPEIV 468 Query: 462 NLLLE 466 L + Sbjct: 469 EFLQQ 473 >gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 453 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 208/469 (44%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L + G G G + ++ D+R F AIKG +D HDF+ A Sbjct: 1 MITL-TLQQLAEITGGTLYG--SDGAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V G ++V+ + + + V D AL +LA R RS+A I+A+TGS GKT Sbjct: 58 VTAGCSGLLVSQRL-----PVEVSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L +T G+ NN IGVPLTL R+ + + ELG +H EI + T Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDIGVPLTLLRLKPQHQYAVIELGANHQDEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP A++ +A AHL F + +A AK EIF GL GT +N D + + ++ H Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQSALH 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S + ++DF ++ + + ++V G H N L Sbjct: 233 GKTVWR-FSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + LS GR + + L+D+SYNAN SM AA VL Sbjct: 292 ALALSVGAPLSAVCQGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ ++GDM EMG + H + + I V +G + DA Sbjct: 349 AEMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAAIDKVLSTGSLSHGISDA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 S + L L ++VK S S +++ +L E+ Sbjct: 402 SGVGEHFADKTALGARALELLAQHQQITLLVKGSRSASMEKVVQILQEK 450 >gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 453 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 117/464 (25%), Positives = 215/464 (46%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++L+AI G + +G IS D+R I F A+KG +++G+++++ A++ G Sbjct: 3 LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAG 62 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +++ + + V V+D AL LA R + ++ ITGS GKT+TK Sbjct: 63 ATVAIIDEVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS + G++NN IG+PL + + D + E+G ++ EI LT++ R Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT + +H+ E I K I + ++ T+ +NY++ + K + Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYEND----MLQKVNEDH 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I G K D + E + + V G+ + +G H N L+ + I Sbjct: 239 EFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ F R + + + FT+I++ YNA+P SM S LS Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSM---KSALSV 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + R+IAVLGDM E+G+ ++S H + + + +G K + Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAI-GKADIILTTGEFRDNYKSGFGKG- 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++ + + DGDV++VK+S S F ++ + Sbjct: 410 -AVSFNCKEDLQNYLCNLIKDGDVILVKASRSAKFEDIVKKIEA 452 >gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 460 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 209/461 (45%), Gaps = 20/461 (4%) Query: 7 FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKG 64 + L + + G + + G+ IDS+ I F I DGHD++ A++KG Sbjct: 12 LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKITKGNLFVPII--RVKDGHDYVKEAMEKG 69 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + IP+ VDD L AL K+A R S +I ITGS GKT K+ Sbjct: 70 AAASLWKKSYGD--PPKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKD 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +++ LS+ + + G+ N+ IG+PLT+ M D +F I E+GMS G+IR L + +P Sbjct: 128 IISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQP 187 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I +HL EEIA AK EI +GL G N D+ L +++ + Sbjct: 188 DVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEP----LLSQNINMLG 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 SFG D + ++ +V HG + + + Sbjct: 244 IEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV---- 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 K R++ + FT+I++++NA+P+SMKAAI L +++ Sbjct: 300 -GQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLN 358 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + + I V+GDM E+G+ ++++H ++ E+L+ +I +V+ G + + ++ Sbjct: 359 AYKKK--IIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHT 416 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + + + + DVV++K S ++ Sbjct: 417 GKIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 457 >gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 451 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 118/463 (25%), Positives = 212/463 (45%), Gaps = 18/463 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + G + ++G+ IDS+++ F I +GH+++ A+ Sbjct: 1 MNLKKLEEVVNGEGLQESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYVKEAMDN 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + IP+ VDD L AL +LA R +I ITGS GKTT K Sbjct: 60 GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LSS + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + + Sbjct: 118 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERDTEFLILEMGMSEKGQIRNLSRIAQ 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I +HL EEIA AK EI +GL G N D+ L +++ + Sbjct: 178 PDVAVITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLFLYNGDEP----LLSQNINML 233 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 SFG D + ++ ++ HG N+L + + Sbjct: 234 SIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKIQYDIPLHGKH-----NILNAIVGI 288 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + K R++ + FT+I++++NA+P+SMKAAI L ++ Sbjct: 289 AVGQFYKVSTEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 348 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + + + V+GDM E+G+ +++H ++ ++L+ +I +V+ G + + ++ Sbjct: 349 NAYKKKM--IVIGDMLELGKKGETYHREIGKMLNEKSIQYVFTYGELAKIVAEEARKNYD 406 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + + DVV++K S ++ Sbjct: 407 AGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIVQK 449 >gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] Length = 460 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + +G + +S DSR I F A+KG +DGHDF A Sbjct: 1 MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ +FGIFELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F + + KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + ++ D K ++ + + G+S +VV G H N L Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464 + +++ L + + G V V+VK S S R+++ L Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450 >gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 460 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 212/464 (45%), Gaps = 20/464 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS+++ F I DGHD++ A+ Sbjct: 10 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + Sbjct: 126 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +AVIT I +HL +EIA AK EI +GL + G N D+ L ++++ Sbjct: 186 QPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKT 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +FG+ D + ++ +V HG + + +G Sbjct: 242 SSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQ 301 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 S + + R++ + FT+I++++NA+P+SMKAAI L + Sbjct: 302 FSKVPTEKIQEA-----LQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQK 356 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 ++ + + I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + ++ Sbjct: 357 LNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNY 414 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + + DVV++K S ++ Sbjct: 415 HIGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIVQK 458 >gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] Length = 459 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 214/468 (45%), Gaps = 24/468 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L + G IG ++ +S DSR++ + F A+KG ++DGH+F AV GA Sbjct: 5 SLAELATRLNGQLIGD--DLPIDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V ++ + V + A+ ++ R + T +A+TGS GKT+ KEM Sbjct: 63 NALLVEREL-----PIDAAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS + G++NN IGVPLTL R+ +FG+FELG +H GEI + + LV+P Sbjct: 118 IATILSQQHRVLYTAGNFNNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGLVKPS 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A++ +A AHL F +E +A AK+EIF + GT +N DD+F +++ S + Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHVTVGGTAVINADDAFADVMLQASSHVKQL 237 Query: 246 TIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + V G H N L I Sbjct: 238 CFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVHRVELPLAGRHQVSNALAATSIC 297 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + LS P +GR G T+ID+SYNANPAS+ AAI L +I Sbjct: 298 LALGLSLAHICQGLSQLKPVKGRMLP----SVLGRVTVIDDSYNANPASVGAAIDWLQEI 353 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G R VLGD+ E+G+ + H +L + ++ ++ G A Sbjct: 354 K----GNRCLVLGDLGELGDNAALLHRELGALAKAKGVNSLFCVGTLSEGASHAFGSK-- 407 Query: 424 VHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468 + + +D L + + + V+VK S S R++ L F Sbjct: 408 --HYQDIDDLVAGLIQYINELPAEITVLVKGSRSARMERVVEALTTAF 453 >gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 471 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 144/474 (30%), Positives = 219/474 (46%), Gaps = 26/474 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ + + Q +QG I I + G+S D+R I P + F A+ GP++DGH F Sbjct: 1 MIPV-SLTWIAQQVQGELIRSEKSIAANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I A Q GA V+V+ + + V D AL +L A + +AITGS Sbjct: 60 IDTAAQGGAVAVIVSRKV-----DTELAQILVSDTKEALGRLGQAIKREVAPKTVAITGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM+ LS K A G++NN IGVPLTL R+ D +F + ELG +HLGEI Sbjct: 115 SGKTTVKEMVAAILSRRGKVLATKGNFNNDIGVPLTLLRLEADHEFAVVELGANHLGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P +A I A AHL F + +A AK+EIF+GL K G N D F+ Sbjct: 175 YTTELVKPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWH 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295 K L +F AD+ + + + + G H N Sbjct: 235 GKYEHL---RNQAFSTKDEADYYAQDVVLGLNGCADFLMVTPLGKVSISLPLPGLHNVSN 291 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L++ + + A++ L GR + + + ++D++YNAN AS+ A Sbjct: 292 ALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVK---VLDDTYNANVASVNA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI +L + GR++ VLGDM E+GE ++ +H + E I ++ G + Sbjct: 349 AIDLLGSFA----GRKVLVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSAS 404 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINLLLE 466 D +S ++ D L + +L D+ ++VK S S ++ L Sbjct: 405 DVYQKS--GYHFSDKDKLVAALAENLTTEKRDISILVKGSRSARMELVVEALEA 456 >gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] Length = 465 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 180/456 (39%), Positives = 252/456 (55%), Gaps = 15/456 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A G G G+SID+R+I P + F A+ G DGH+F+ A + Sbjct: 4 PLWTAEEIAAATGGKLAGQA--FRAGGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121 KGA V+ + + P V D L AL KL AAR R +A A+TGSVGKT+ Sbjct: 61 KGAAGVIASRQVFG-------PAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTS 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + + L+ ++ + SYNNHIGVPLTLARMP +FE+GM+H EIR L+ + Sbjct: 114 VTQAIMAGLTLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIRPLSRM 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 VRPH VITT+ P H NF E +A AKAEIFEGLE G LN D+ +F+LLK ++ Sbjct: 174 VRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGEAE 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G T+ +FG + D +L ++ + + ++ +L GK+++ G H N + L Sbjct: 234 RAGA-TVRTFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMAVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L D+D + AL F P GRG + G FTLIDESYNANP SM +AI+ L Sbjct: 293 LMLEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIATL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRRI L DM E+G +++FH LAE L I V+ +G + +L DALP Sbjct: 353 G--ARETAGRRIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFCAGPLMKSLWDALPP 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + Y+E+ L + ++ GDVV+VK SN Sbjct: 411 TRRGGYAESAAELAPQVVQAVEPGDVVMVKGSNGSK 446 >gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] Length = 460 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 118/463 (25%), Positives = 206/463 (44%), Gaps = 18/463 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + I G ++G+ IDS+++ F I DGH+++ A+ Sbjct: 10 MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPII-RMNDGHEYVKEAMDN 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + IP+ VDD L AL +LA R +I ITGS GKTT K Sbjct: 69 GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + + Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT I +HL EEIA AK EI +GL G N D+ L ++ Sbjct: 187 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP----LLSQHINTL 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 SFG D + ++ +V HG + + + Sbjct: 243 GIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 299 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + K R++ + FT+I++++NANP+SMKAAI L ++ Sbjct: 300 --GQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + + + V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ Sbjct: 358 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 415 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + + DVV++K S ++ Sbjct: 416 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQK 458 >gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 466 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 127/459 (27%), Positives = 211/459 (45%), Gaps = 13/459 (2%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ +I+G + + VNG+ IDSR + P FFA KG DGHDF+ A + GA V+ Sbjct: 8 VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + + V+D L AL LA A R ++A+TGSVGKT+TK++L + Sbjct: 68 VSRGDCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDILALC 127 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L S KT G+YNN IG+PLTL ++ + E+ M GE+ L + +P A+I Sbjct: 128 LQSRFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLATIAQPSSALI 187 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 + + HL +E IA AKAE+ L +N D L ++ Y Sbjct: 188 SNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSP----LLEEAVRPYAAKKYR 243 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG SK+ DF++ + ++ + + G+S ++ A N + + +L Sbjct: 244 FGYSKSCDFRIEETIIKNQGIEIRLICLGQSEKLFLPLPSRRWAMNAVAAAAMAFLLGVP 303 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ +L F+P R +I+++YNANP SM A+ ++ +G Sbjct: 304 LEEIKSSLLNFNPGSKR---LEIIPLPDGGKIINDTYNANPLSMINALETSREL--QEKG 358 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVH 425 + +AVLGDM E+G+ Q H ++ + + G + A + A V Sbjct: 359 KLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLICIGERAAWMAEAARAAGMAGEQVR 418 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + F++ SL D ++ K+S L + Sbjct: 419 HFLSKEESIGFLKQSLNSSDTILFKASRGMQLESLAEEI 457 >gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] Length = 457 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 230/469 (49%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ NF IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 S G+RIAVLGDM E+G S + H ++A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PTNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] Length = 460 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + +G + +S DSR I F A+KG +DGHDF A Sbjct: 1 MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ +FGIFELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F + + KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + ++ D K ++ + + G+S +VV G H N L Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464 + +++ L + + G V V+VK S S R+++ L Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450 >gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] Length = 453 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 206/469 (43%), Gaps = 19/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L DL + + + I + GI+IDSR + + F G + DGH++I A Sbjct: 1 MKYL--VKDLEKILNAKKVNITSDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA + D S + + V+D A+ LA A IAITGS GKT Sbjct: 59 FEKGAAASLSLKDDFVSSNN----IIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+++T LS+ K + G++NN +GVPLT+ P D + + E+G G++ FL+ Sbjct: 115 TTKDIITSVLSTKYKVHKTQGNFNNELGVPLTILAAPEDSEILVLEMGADGFGQLDFLSK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P+ VIT I +H+ F E IA AK EI G++K G N D E+L Sbjct: 175 LVEPNYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGD----EVLLKSLV 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S G++ D L + ++ ++ + + + Sbjct: 231 DSSDFNTTSCGENNYNDIILENYTITRDRIDFKLNISDEQYFTKL----KGKHNLFNIMF 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ + E G R + + +I+++YNA+P SMKA + V+ Sbjct: 287 ATAIASKIGLTNEEIRKAIENTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVV 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLALKDAL 418 S + VLG M E+G ++H ++ E +S +I+ V G + + Sbjct: 347 SSFDDFD--FKTLVLGSMFELGPNEVNYHAEVGEYISNKTNDINLVISVGELAENITKQI 404 Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I + T + +++++ +V+++K+S S +I + + Sbjct: 405 KNDKIKTLHFPTTAEVSEYLKNNKHKNEVILLKASRSMKLETIIEEITK 453 >gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 445 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 189/469 (40%), Gaps = 30/469 (6%) Query: 7 FHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + Q G+S D+R + P F A+ G +DGHD++ A Q Sbjct: 2 LSQLTAILGENLRRSPQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ + + +P + V+D L A L R + +I ITGSVGKT+TK Sbjct: 62 GAIALITSRPL-----ETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGITGSVGKTSTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ L + K ++NN IGVP TL + D DF + E+ M GEI L + + Sbjct: 117 ELIAGILGTQGKVLKTEANFNNEIGVPKTLLNLTPDHDFAVIEMAMRGPGEIARLAEIAQ 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I +IT + AH+ E IA AK E+ E + K LN D+ A + Sbjct: 177 PTIGIITNVGTAHIGRLGSREAIAKAKCELLEFMPKDSVAMLNADNELLMATAATVWSGE 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++ + ++Q + + Sbjct: 237 TLSYGFSQGDLTGEYIAPDQVKVADQVFPVPLAGQHNALNYL----------------AA 280 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + + L+ R + + L+DE+YNA SM ++ L + Sbjct: 281 LGVMQVLGFGWQGLTTEISLAMPKGRSQRIVLPNDIVLLDETYNAGLESM---LAALDLL 337 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421 R IAVLG M E+GE S++ H + E + +++ A+ D Sbjct: 338 KQTPGDRHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVLVDDPEAQAIADGAL-G 396 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + L +++++ GD ++ K+SNS G R++ L + + A Sbjct: 397 VPSLCFPDHRSLIEHLRANMQPGDRLLFKASNSVGLSRVVEALQQTYSA 445 >gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] Length = 457 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 17/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T H + I G + +G + DSR + P FFA+ G +DG+ F Sbjct: 1 MISL-TAHGISNVIGGKLVSGPFDRVASGGVCTDSRHLPPHAVFFALGGEKFDGNLFAPE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + A VVV+ V S V V+D L AL KLA R T+I +TGS GK Sbjct: 60 A-SRTAAAVVVSR--VEEGMDPSCAVILVEDTLEALQKLASWWRSELTLTVIGLTGSNGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TK++ LS +T A G+ NNHIGVPL++ R + ++E+GM+H GE+ L Sbjct: 117 TSTKDLTASVLSQGFRTIATQGNLNNHIGVPLSILRATPSDEAAVWEMGMNHSGELAPLC 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP I +IT+I +H+ E IA K + L + G + D + ++++ + Sbjct: 177 EMTRPKIGIITSIGTSHMEYLGSRENIAREKCTLARCLPEDGFMIFPADCDYADMIRQST 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A I G + + + + ++ EV G HM N L+ Sbjct: 237 RAACIDCGIGAGTVRAENPVSTE----NGTRFILSIPDFCREEVELPVHGRHMVTNALLA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L+ GR R ++D++YNANP SM+AA+ Sbjct: 293 AAAGWAAGLAKEQIASGLNQARLTGGRLHCTRING----ILVVDDTYNANPDSMQAALHT 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 ++ +S GRR AVLG M E+G S+ H+ + + V G + DA+ Sbjct: 349 VAGLS--CTGRRFAVLGRMGELGAFSEEGHVLVGRTAEELRLDCVVSVGTDAARITDAIS 406 Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + + + +++S GD+V+ K S +++NL Sbjct: 407 PNAFTQSLHFGSAEEAAEWLRSHTAPGDIVLFKGSRLARMEQVMNL 452 >gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 440 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 132/461 (28%), Positives = 195/461 (42%), Gaps = 24/461 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + VN I DSR I + F +KG DGHDFI A Sbjct: 3 LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + VDD L A KLA ++K +IA+TGS GKTTTK Sbjct: 62 GAIISFSEKEVEQA-------HLLVDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS KTY G++NN IG+P T+ MP D + + E+GM H G+I FL+ L + Sbjct: 115 DMIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I AHL + E IA K I GL + + F K G Sbjct: 175 PELAVITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPIINAFIPDNQKIIRFG 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + F K + + + + G + A N ++ + Sbjct: 235 LPGEDLFIT-----------KLVEHKEKLTFETNFLDESITIPVPGKYNATNAMLAAFVG 283 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 KAL E R + L+ + YNANP +M+ + I Sbjct: 284 LHYGLSEAEIKKALKE---VELTRNRTEWKKAKNGADLLSDVYNANPTAMRLILETFQAI 340 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GR+IAVL DM E+G + H ++ + + I V+L G + L + + Sbjct: 341 PKNENGRKIAVLADMLELGPSAAQLHKEILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKA 399 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V Y +D L + + L D V+ K SNS ++ L Sbjct: 400 VSYFTDLDLLTESLSADLKPTDQVLFKGSNSMKLSEVVEKL 440 >gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] Length = 466 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 134/474 (28%), Positives = 205/474 (43%), Gaps = 26/474 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + Q + G G+S DSR++ E F A+ G +DG F+ +A +K Sbjct: 1 MMMVDEAAQVLHVDWSG--SNVRFTGVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ D + S PV V D L +LA R R +I +TGS GKTTTK Sbjct: 59 GAVAAMLQKDAEPAGLSGDFPVIRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIG-----------SYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 EM+ L A I + NN IGVP L R+ + + E+GM+HL Sbjct: 119 EMIAAILRVAASDNAIINDPAERVLATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHL 178 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI +LT L RP+IAVIT AH+ +E +A AKAEI GL+++GT N DD + Sbjct: 179 GEIAYLTRLARPNIAVITNAGAAHIEGLGSVEAVARAKAEILVGLDQSGTAIFNADDRYA 238 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L + + A I K++ + ++++L ++EV G H Sbjct: 239 SLWRECAGAREIIDFGLTEKARVSAVYRLGRLVN----TLQLRLPDATVEVKLQAPGVHN 294 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L + L + + L F GR + LID++YNANP S Sbjct: 295 IYNALAAAAVAWSLGIKKEWIVAGLERFQSVHGR---LQKKCGLHHAVLIDDTYNANPES 351 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + + EG++I VLGDM E+G+L+ H + + + G Sbjct: 352 V----RAALAVLAAAEGKKILVLGDMGELGQLAIDLHRTIGRDARKAGLDQLLTLGKLSA 407 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + ++D L +S L D ++VK S R++ L + Sbjct: 408 YAAEEFGKGAR--HFNSIDELLKVAKSLLADDVTLLVKGSRFMQMERVVRQLEQ 459 >gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] Length = 462 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 132/473 (27%), Positives = 221/473 (46%), Gaps = 18/473 (3%) Query: 1 MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ A+ + + + + D+R + + F + G + DGH FIL Sbjct: 1 MISL-TIKEIAAAVGALNDTSMWSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILK 58 Query: 60 AVQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A++ GA + + + + PV V+D L AL LA + ++ ITGS Sbjct: 59 AIENGARASLWSKSLKDLPFEVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK+M LSS + + G++NNHIG+P+T+ MP+D + I E+GM+H GEI+ Sbjct: 119 GKTTTKDMTDAVLSSQYRVHKTQGNFNNHIGLPITILEMPIDTEVVILEMGMNHAGEIKV 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ L P +A+IT I +H+ F IA AK EI GL++ G + ++ LL+ Sbjct: 179 LSDLAEPDVAIITMIGESHIEFFGSRAGIADAKMEISSGLKENGVLIYPGEEP---LLQE 235 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + L K + +FG + D Q+ + M + +G + N L Sbjct: 236 RVTFLTDKQLKTFGTAAENDLYPLNIDAQMNQTS-FTTNETPDMTISLPVLGTYNVNNAL 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L +L + + L+ F + R + +++++YNANP +MKA + Sbjct: 295 AALMAGIVLGVPIQKSAPKLAKFQLTKNR---TEWLVGINGSRILNDAYNANPTAMKAVL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 S EG++I +LGDM E+GE S H+ + E L+ I V L G + L ++ Sbjct: 352 DNFSTF--ENEGKKIVILGDMLELGEHSSELHLSIKESLNPNQIKKVILYGEEMSVLYES 409 Query: 418 LPR---SIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L + ++ Y + L + + GD V++KSS ++ L + Sbjct: 410 LQETFANDNLFYFTGDKEPLIQLAKEQIEPGDYVLIKSSLGTDLLSVVRALQD 462 >gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] Length = 476 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 199/485 (41%), Gaps = 35/485 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T + G IG + G IDSR + F ++G DGH FI + Sbjct: 4 MTLEHIAAVCGGTYIGNEADKTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFE 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA V+ + G P V++ L A+ K+A R ++ ITGSVGKT+T Sbjct: 64 KGALAVLSEEKLENPAG----PYILVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L+ G+ NN IG+PLT+ ++ + + E+G+S GE+ L+ + Sbjct: 120 KEMIASVLAQKYNVLKTEGNLNNEIGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------ 236 P I VIT I HL N + I AK E F L G LN DD K Sbjct: 180 NPDICVITNIGLCHLENLITRDGILKAKTESFAHLTPDGIAVLNGDDDKLCDKKVVNGKP 239 Query: 237 ------AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------SMEVV 284 K+ + + ++ + + + K +MEV Sbjct: 240 AVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLTGTKAAIHYPSKETGGEVTMEVT 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G H N L + + L D + + GR T+ID+ Sbjct: 300 IPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQTIGGRSNLIHKNG----ITIIDD 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 YNANP SMKA+I VL + GR+IAVLGDM E+G + H + E + I + Sbjct: 356 CYNANPVSMKASIDVL----SNAPGRKIAVLGDMGELGAEEKQLHYMVGEHFAGKGIDAL 411 Query: 405 WLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + G + A+ + VH+ E L + + GD V+VK+S+ GF ++ Sbjct: 412 YCVGTLSQEITKAVRANSSATEVHHYEDKADLIKDLVKEVKSGDTVLVKASHFMGFPEIV 471 Query: 462 NLLLE 466 L + Sbjct: 472 KELTK 476 >gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 452 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 222/464 (47%), Gaps = 19/464 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L+A G + P ++ +S +S I P F I G D H FI +A+++G Sbjct: 5 TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEG- 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + A S + P V D L A+ ++A R + II +TGSVGKTTT+EM Sbjct: 64 GACLTQEHTEA---SGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L K + IG+ N+ +GVPLTL + + + G+ E+GMS G+I L +++ P+ Sbjct: 121 IAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHPN 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + V+T + +H+ + I K +I GL + G +FLN D+ + K K Sbjct: 181 VGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDND----MIRKHIDYVKK 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +G +++ ++ K ++ Q+ E + + +G H N L + I Sbjct: 237 PYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIGLR 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + LS F + + ++ + LID++YNA+P SMKA++S+LS+ Sbjct: 297 YDVPMSAIKAQLSTFSG------QRQNIIHVNDYILIDDAYNASPDSMKASLSILSEF-- 348 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSI 422 GR+IAVL DM E+G S +H ++ ++ ++ ++++G + S+ Sbjct: 349 KTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKENPSL 408 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H + L F+++ L DVV++K SN + L+ Sbjct: 409 HTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALMA 452 >gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] Length = 477 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 170/476 (35%), Positives = 248/476 (52%), Gaps = 18/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A GH + G+SID+R+IA + F A+K DGH+F+ A Sbjct: 1 MTALWTSADAAAATGGH---TTQEWDAQGVSIDTRTIAQGDLFVALKDVR-DGHEFVAQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V + P+ V DVL AL L AAR R+ A I AITGSVGKT Sbjct: 57 LDQGAAAALVTH--RPADVPADAPLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L K +A SYNNH GVPLTLARMP D D+ + E+GMS+ GEI L+ Sbjct: 115 STKEMLRAVLEKQGKCHAAEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEITPLSQ 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +PH+A++TT+A AHL++F + IA KA I +GLE G LN D +L+ + Sbjct: 175 MTQPHVAMLTTVAAAHLASFDNLAGIAVEKASIMDGLEPGGVAVLNGDIETSGILQDHAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LG FG++ D+ ++ + + + + G++ G H A N + L Sbjct: 235 KLGA-RQVLFGETAP-DWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF----TLIDESYNANPASMKAA 356 + L AD A + + P GRG R + L+D+++NANP S+ AA Sbjct: 293 AVAEALGADPVAAALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAA 352 Query: 357 ISVLSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ +P +GRR+A+LGDM E+G+ Q H ++A L ++ V +G Sbjct: 353 LEVLAAATPTDNVGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPL 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +L L ALP H++ET L L + GDVV+VK S +++ + + Sbjct: 413 MLHLWQALPEEQRGHWAETAAELVLQAPRLVDAGDVVLVKGSKGSKVSLVVDAIRK 468 >gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 452 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 221/464 (47%), Gaps = 19/464 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T D+L+A G + P ++ +S +S I P F I G D H FI +A+++G Sbjct: 5 TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEG- 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + A S + P V D L A+ ++A R + II +TGSVGKTTT+EM Sbjct: 64 GACLTQEHTEA---SGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L K + IG+ N+ +GVPLTL + + + G+ E+GMS G+I L +++ P+ Sbjct: 121 IAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHPN 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + V+T + +H+ + I K +I GL + G +FLN D+ + K K Sbjct: 181 VGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDND----MIRKHIDYVKK 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +G + + ++ K ++ Q+ E + + +G H N L + I Sbjct: 237 PYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIGLR 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + LS F + + ++ + LID++YNA+P SMKA++S+LS+ Sbjct: 297 YDVPMSAIKAQLSTFSG------QRQNIIHVNDYILIDDAYNASPDSMKASLSILSEF-- 348 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSI 422 GR+IAVL DM E+G S +H ++ ++ ++ ++++G + S+ Sbjct: 349 KTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKENPSL 408 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H + L F+++ L DVV++K SN + L+ Sbjct: 409 HTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALMA 452 >gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 469 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 136/478 (28%), Positives = 211/478 (44%), Gaps = 26/478 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T + QA+ G G + I+IDSR +A F AIKG DGHDFI Sbjct: 1 MKGM-TLRAMTQAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIG 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +KGA V+ ++ S V+ L AL LA+ R ++ ITGSVG Sbjct: 60 QCFEKGAACVISEKELPDEEHS----YIQVESSLQALKDLALLYRNNLDVKVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE ++ LS + +G++NN IG+PLT+ R+ D + + E+G+S GE+ L Sbjct: 116 KTSTKETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P I VIT I HL N + I AK EIF + G + LN DD + Sbjct: 176 SKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNPDGIVILNGDDDKLSTISQV 235 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKSMEVVHHGIGYHMAQNM 296 + S AD + + + + + ++ G+HM N Sbjct: 236 HGKRPLVFGISNKDGVYADNIKSLGLDGTSFTIHGLDTADKYSTFDMTVPVPGHHMVYNA 295 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + S+L + + GR + FT+ID+ YNANP SMKA+ Sbjct: 296 MAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIKENG----FTIIDDCYNANPVSMKAS 351 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VL GR++A+LG M E+GE + H D+ L +I + +G + Sbjct: 352 LDVLDTAI----GRKVAILGSMFELGENEKQMHYDVGMYLGTKDIDVLITAGDLAAQIAA 407 Query: 417 A---------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH ET D + I L GD +++K+S+ F +++ + Sbjct: 408 GTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIKASHGMEFSKVVEAVK 465 >gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] Length = 460 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 229/468 (48%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L Q + H +G V +S DSR I P F A+KG +DGHDF A Sbjct: 1 MIPI-SLKALSQHLGAHRVGD--DVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAIALLVEREL-----AFDIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ + +G+FELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRPH+A++ + AHL F +A AK+EI+ L++ GT +N DD+F +++ KAK Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAK 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + + D K S+ + + G+S EVV G H N L Sbjct: 233 HYKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L ++ + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLNLTEIAEGLSQLTPVKGRMQPTQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCTGTLTQHTSHA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 H + ++ L I G V V+VK S S R+++ L Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450 >gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Verrucomicrobium spinosum DSM 4136] Length = 460 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 129/467 (27%), Positives = 200/467 (42%), Gaps = 15/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + G + P ++ DSR I P E F A+ G +D HDF+ Sbjct: 1 MKAL-TLETIASYSGGRLVHGDPAVTCTSVNTDSRKIQPGELFVALVGEKFDAHDFVPQV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 Q GA V+V+ + ++ +L V V D L AL +LA A R +I ITGS GKT Sbjct: 60 AQAGAAAVIVSR-LPENVEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK+++ L + A +G++NNHIG+PLT+ RM + + E+GM+H GEI L Sbjct: 119 STKDLVAAVLRKKYQVCATLGNFNNHIGLPLTILRMEEGDNCAVLEMGMNHHGEIAVLAG 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP A+IT I AH+ E IA K + + G + LN +D F + A+SH Sbjct: 179 IARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAAVPHGGVVVLNANDDFSSSIAARSH 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + G + + V G HM N + Sbjct: 239 ARVVLAGVGEGDVVA----TLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAALAA 294 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A + K T++D+SYNANP SM+A + L Sbjct: 295 AVGWHFGVVPQDIAAA----LGEVQLTKGRVQVKFWRGVTVLDDSYNANPDSMRAGLKTL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDA 417 + + GRR+AVLG M E+G ++S H ++ + + V+ G + + Sbjct: 351 AAL--QIPGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVFSVGEEAALITSQAEK 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S + + + L +GD V++K S S +++ L Sbjct: 409 SGGSGDYRNFSSHAAVAACLTEWLHEGDAVLLKGSRSAAMEQVLTHL 455 >gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella sp. W3-18-1] gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella putrefaciens CN-32] gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. W3-18-1] gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella putrefaciens CN-32] Length = 460 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 226/468 (48%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + H +G + +S DSR + F A+KG +DGHDF A Sbjct: 1 MIPL-SLEVLSQHLGAHRVGN--DVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ +L+IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----ALNIPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ ++G+FELG +H GEI + + Sbjct: 113 SVKEMIATILSAKYQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F +++ KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADVMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + + D K ++ + + G+S +V G H N L Sbjct: 233 PYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQ----LGRIRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 H + ++ L I G V V+VK S S R+++ L Sbjct: 405 FGAEHHESVAVLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450 >gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] Length = 441 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 144/456 (31%), Positives = 217/456 (47%), Gaps = 29/456 (6%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 G IG V DSR + + F A+KG +DGH F+ A ++GA VVV Sbjct: 9 ITGGRLIG--ENCEVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVER 66 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 ++ G + V+D L AL +A+ R K ++ I GS GKTTTKE++ LS+ Sbjct: 67 EVPVKEGKFA---LVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSA 123 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + K +YN+ IGVPL++A P D DF + E+G S G++ LT LV PH+ VIT+I Sbjct: 124 VGKVCKTPKNYNSQIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSI 183 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL F ++++ EI EG+ + L +H ++ FG+ Sbjct: 184 GEEHLETFGCLDDVILGNGEILEGMREDHVAVLPSYV---------AHCYRVERAVLFGE 234 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 Q K E V+ + E+ + +N+L +LG++ L D T Sbjct: 235 GTPLSAQ--DLKLTVEGVRFVVKGK----EIFLPVPSLALVENILCSLGVMEALGVDWTT 288 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L+ F P EGR L+ T+ID+SYNANP S+K AI LS + EG RI Sbjct: 289 LLDKLTTFRPVEGRF----RTLSVMGATIIDDSYNANPLSVKKAIESLSLM----EGHRI 340 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMD 431 AVLGDM E+GE ++ H D+ + I G+ + A +A + Y E Sbjct: 341 AVLGDMLELGEKAEELHRDVGRWCAEKRIDECIFYGYWMRYAFHEAKRLGVSTIYLEDKG 400 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ L +G +++VK S +I LL+E Sbjct: 401 EVVQHLRKKLREGTIILVKGSRGMKMEEVITQLLQE 436 >gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. NRRL B-14911] gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. NRRL B-14911] Length = 457 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 204/464 (43%), Gaps = 15/464 (3%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + I + + G+SI+SR++ P F KG H DGH F+ A++KG Sbjct: 5 TIAQIAGMIPVLNDHSAFSDISIKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDALRKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ L +P+ V+D L A+ +L+ A R + ITGS GKTT K+ Sbjct: 65 AAAALWQQDV--PNPPLHLPILVVEDTLKAVQQLSEAYRNELDIKVAGITGSNGKTTVKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M LS K G+YNNH+G+PLTL + D + + E+GMS GEI FLT L RP Sbjct: 123 MTARLLSLRYKVQKTEGNYNNHLGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + +IT I +HL + IA AK EI EGL+ G I + D+ + + G Sbjct: 183 DVVMITNIGESHLQDLGSRAGIAKAKLEIIEGLKDDGMIIYHGDEPLLKD--RLNGYSGP 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + SFGK ++ + Q + S Q ME +G H N L + Sbjct: 241 AKVRSFGKGQSNSIYPVRIDQEEKGSV--FQANLSDMEYHLPVLGVHNVMNALCAMEAAH 298 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + + + R + +I+++YNA+P SM+AAI ++S++S Sbjct: 299 FLGIPYEQMNEGFA---SLKLTAMRMELSEGCKGEKVINDAYNASPTSMRAAIDLVSELS 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 + ++ VL DM E+G+ FH ++ + + I +V G + + Sbjct: 356 GYS--IKVLVLADMLELGDDEVRFHREIGQAIDPEKIDYVLTFGSLGRVIAEGAQEVFSE 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V L +QS +V+ K S L Sbjct: 414 ERVFAFSEKGPLIEKLQSLTNAETIVLFKGSRGMKLEEAAEALK 457 >gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] Length = 451 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 203/466 (43%), Gaps = 27/466 (5%) Query: 4 LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T +L Q + IG + V +S D+R++ F A++G +D HDF AV Sbjct: 1 MMTLRLAELAQVLDARLIGDDGEITV--VSTDTRTLGAGALFVALRGERFDAHDFCEQAV 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 Q GA ++V ++ L+IP V D L L +L R R ++AITGS GKTT Sbjct: 59 QAGASALLVEREL-----PLAIPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KEM T L + + A G++NN +GVPLTL R+ F + ELG +H GEI + T L Sbjct: 114 VKEMATAILRNEGEVLATAGNFNNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSL 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P A+I +A AHL F +E + AK+EIFEGL + GT +N D+ F+ + + Sbjct: 174 AKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGLSEGGTAIVNADNEFWPKWRER--- 230 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 GI+ +S + + + + G H N L Sbjct: 231 -GIQCAFSIEGQSQPFHARNLVLNERGCAEFVMVTPQGELSLTLAIPGRHNVANALAAAA 289 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L A + + L P +GR R TL+D++YNA+ S+ A I L+ Sbjct: 290 GCLALGASLGSVKAGLEQMAPVKGRFCVQRWGG----LTLVDDTYNASVESVLAGIDALT 345 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G ++ V GDM E+GE S H + + V G DA Sbjct: 346 AM----GGFKVLVFGDMRELGEESAEQHARVGRHARERGLDAVLTVGEESRHTADAAA-- 399 Query: 422 IHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLL 465 + + LF + + ++VK + ++ ++ Sbjct: 400 --GRHFDNKASLFEVLAQMINTHQEISILVKGARGSRMEDIVEMVK 443 >gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 453 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 117/464 (25%), Positives = 214/464 (46%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++L+AI G + +G IS D+R I F A+KG +++G+++++ A++ G Sbjct: 3 LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAG 62 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +++ + + V V D AL LA R + ++ ITGS GKT+TK Sbjct: 63 ATVAIIDEVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS + G++NN IG+PL + + D + E+G ++ EI LT++ R Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT + +H+ E I K I + ++ T+ +NY++ + K + Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYEND----MLQKVNEDH 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I G K D + E + + V G+ + +G H N L+ + I Sbjct: 239 EFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ F R + + + FT+I++ YNA+P SM S LS Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSM---KSALSV 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + R+IAVLGDM E+G+ ++S H + + + +G K + Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAI-GKADIILTTGEFRDNYKSGFGKG- 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++ + + DGDV++VK+S S F ++ + Sbjct: 410 -AVSFNCKEDLQNYLCNLIKDGDVILVKASRSAKFEDVVKKIEA 452 >gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus pseudintermedius ED99] Length = 454 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 135/462 (29%), Positives = 206/462 (44%), Gaps = 15/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + I + G++IDSR I + F KG + DGH + A+ GA Sbjct: 5 TLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G D + PV V++ L AL +LA A T+IA+TGS GKTTTK+M Sbjct: 65 GATFFQRDST-LTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS + G+YNN IG+PLT+ + D + I E+GMS EI L+++ +P Sbjct: 124 LENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AVIT I +H+ + E IA AK EI GL+ G + D+ LLK L Sbjct: 184 FAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G S D Q + E V + G H +N + + + I Sbjct: 241 HQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTIPIL---GEHNMRNATIAIAVGRI 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + + R + + +I+++YNA+P SMKAAI LS + Sbjct: 298 MGLTDEQIQQ---QLTSLKLTDMRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLSHMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424 G I VLGD+ E+GE S+ H + L I ++ G +A+ + ++ Sbjct: 354 ---GETILVLGDVLELGEQSRQLHESVGAYLENKGIHQLYTFGEGAMAIHEKGKAYVNEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + D L ++ S + VV+VK+S ++ L+E Sbjct: 411 IHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEALVE 452 >gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS678] Length = 460 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 227/470 (48%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + +G + +S DSR I F A+KG +DGHDF A Sbjct: 1 MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + IP V D A+ + V R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ +FGIFELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F + + KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + ++ D K ++ + + G+S +VV G H N L Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464 + +++ L + + G V V+VK S S R+++ L Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450 >gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium lentocellum DSM 5427] gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium lentocellum DSM 5427] Length = 456 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 130/463 (28%), Positives = 200/463 (43%), Gaps = 16/463 (3%) Query: 7 FHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 D++ A+ G I + + + I+ DSRS F +KG +DGH+FI +KG Sbjct: 5 IQDIISAVGGKCIQEGLIKQPIEVITTDSRSQVTNGLFVPLKGDRFDGHEFIKSVYEKGV 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D V + V+D AL L R + ++ ITGSVGKT+TKEM Sbjct: 65 IATLTMEDKVIDPRLWT---IKVEDTRQALLDLGHYYRNQFTVPVVGITGSVGKTSTKEM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS + G++NN IG+PLTL +M + + E+GM+H EI L+ P Sbjct: 122 VAAVLSGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEIHRLSLAAAPE 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT + +H+ N E I AK EI +GL G + LN D+ + Sbjct: 182 VAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDNDLLSTVGEL-----PF 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G + + D+ E + V + +G HM N L + + Sbjct: 237 NKVTYGLNTSNDYYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNTLAAIAVAQY 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L K L + P + R T+ID++YNA+P SM+AA+ VL Sbjct: 297 LGLSKAEIQKGLESYAPAKMRMHLETY---DNQITVIDDTYNASPDSMEAALKVLRDY-- 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIH 423 +GR+IAVLGDM EMGE + H + + I V+ G + Sbjct: 352 DTKGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDRVYAVGTLAEYIFKGAKEQEGAP 411 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Y T + +Q L D V+ K+S F ++ + + Sbjct: 412 TFYYPTKEAFIEVMQRELQAEDTVLFKASRGMHFEEMLEAVRK 454 >gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] Length = 452 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 210/469 (44%), Gaps = 26/469 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + + + +N I DSR I + F ++G DGH+FI A Sbjct: 3 LTLQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ + P V D L A LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSEKNITS-----DYPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L++L Sbjct: 117 DMIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTH 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIAV+T I AHL F E+IA K +I +G++ G + D L K + Sbjct: 177 PHIAVVTLIGEAHLEFFGSREKIAQGKMQITQGMDGHGILIAPADKIISSFLPEKQKVIR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 AD + + ++++ + E+ G + A N ++ + Sbjct: 237 ----------FGADEDIFVTELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVG 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL+ R ++ + YNANP +MK + S I Sbjct: 287 KLLNVSEEKIISALAQ---LNLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSSI 343 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + G++IAVL DM E+G+ + H + L I ++L G + AL D + + Sbjct: 344 PANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYS 403 Query: 424 V---HYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V +Y + +D L IQ L D +++K SNS +++ L + Sbjct: 404 VGKWYYFAQADQVDELTEQIQKVLGPNDQILLKGSNSMKLAQVVECLEK 452 >gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] Length = 460 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + +G + +S DSR I F A+KG +DGHDF A Sbjct: 1 MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ + IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ +FGIFELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTSADEFGIFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F + + KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + ++ D K ++ + + G+S +VV G H N L Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464 + +++ L + + G V V+VK S S R+++ L Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450 >gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] Length = 463 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 154/463 (33%), Positives = 237/463 (51%), Gaps = 6/463 (1%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + A++G +G + ISID+R++ P + F AIKG ++DGH F+ A K Sbjct: 1 MWCAKSMGAAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV+ V + P+ V D L AL+ +A ++A +IAITGS GKTTTK Sbjct: 60 GAVAAVVDEVSVPTADCG--PLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L+ ALS K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ + R Sbjct: 118 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT + PAHL F +E + +AK E+F ++ LN+D ++ ++A + + Sbjct: 178 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYC 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I SFG AD Q+ + ++ S + + + + + Sbjct: 238 A-RIISFGVGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAA--VG 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + D+ A A+ F P EGRGK + A L+D++YNANP SM AAI LS + Sbjct: 295 HAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNL 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RR+A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ + Sbjct: 355 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLR 414 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ + GD V+VK S + ++ LLE Sbjct: 415 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457 >gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] Length = 454 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 128/469 (27%), Positives = 202/469 (43%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T +L A G +G + V I DSR F IKG D HDFI Sbjct: 1 MKNL-TLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++K + D +G P V L A+ +A + + ++ ITGSVG Sbjct: 60 QVMEKAVLATLSEKD----LGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L+ T G++NN +G+PLT+ R+ + + + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP+ VIT I HL + I AK EIF+ L+ I LN DD L Sbjct: 176 AKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDDD---KLVTV 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 GIK ++ ++ + + + + +S V+ G H N L Sbjct: 233 QETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNALA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + ++ K + GR + +T+ID+ YNANP SMKA++ Sbjct: 293 ATAVGLTYGLTIEEIRKGIESLQSVSGRF----HIIEAPNYTVIDDCYNANPISMKASLD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ GR++A+LGDM E+G + H ++ + + I + G + DA Sbjct: 349 VLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMADAA 404 Query: 419 PR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L + L GD V+VK+S+ F ++ L Sbjct: 405 GEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453 >gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 199/470 (42%), Gaps = 23/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T +L A G +G + V I DSR F IKG D HDFI Sbjct: 1 MKNL-TLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++K + D +G P V L A+ +A + + ++ ITGSVG Sbjct: 60 QVMEKAVLATLSEKD----LGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L+ T G++NN +G+PLT+ R+ + + + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP+ VIT I HL + I AK EIF+ L+ I LN DD ++ Sbjct: 176 AKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDDDKLVTVQE- 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 FG + K K + + +S V+ G H N L Sbjct: 235 ---TKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + ++ K + GR + +T+ID+ YNANP SMKA++ Sbjct: 292 AATAVGLTYGLTIEEIRKGIESLQSVSGRF----HIIEAPNYTVIDDCYNANPISMKASL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ GR++A+LGDM E+G + H ++ + + I + G + DA Sbjct: 348 DVLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMADA 403 Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + + L + L GD V+VK+S+ F ++ L Sbjct: 404 AGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453 >gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 458 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 143/467 (30%), Positives = 207/467 (44%), Gaps = 27/467 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W+ ++ + G G G+S D+RS+ + F A+ GP YDGH F+ Sbjct: 2 MI--WSLAEIASKVGGELHGG--DTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSD- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A V+V+ + +P VDD AL +LA A R T++A+TGS GKT Sbjct: 57 -DLPAAGVMVSR-----LLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML+ T A G+ NN IGVPLTL M + + + E+G +H GEI +LT Sbjct: 111 TVKEMLSAIAREHAPTLATRGNLNNDIGVPLTLLEMARNHRYAVVEMGANHHGEIAYLTS 170 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +A+IT PAHL F IE ++ AK EI+ GL G +N DD + + Sbjct: 171 LARPDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGPDGVAVINADDIYADYW---YG 227 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + SFG D + + + + G+ + G H A N L Sbjct: 228 LNPGRRVISFGL----DHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRHNALNALAAA 283 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ L+ HP GR +G L+D+SYNANPAS +AA+ VL Sbjct: 284 AAALGAEIPEEAILRGLARVHPVSGRLV---AVPGRGGALLLDDSYNANPASTRAALEVL 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S G R VLGDM E+G+ ++ H ++ I H G A Sbjct: 341 SGH----GGERCMVLGDMGELGDEGETLHAEIGARARELGIEHFHAVGPLSAHAVRAFGE 396 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L ++ L G V+VK S S R++ L + Sbjct: 397 G--AQHHPDQAALIEALRPMLHAGMTVLVKGSRSARMERVVQALQAD 441 >gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] Length = 461 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 213/466 (45%), Gaps = 17/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++++A +G+ V I IDSR AF AI G + D H +I A G Sbjct: 4 LTVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + +VN I S + + VDD AL + + + I ITGSVGKTTT++ Sbjct: 64 CRVFIVNKGKDIDIKS-DMNIIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ ALSS + T ++NNH GVPLTL + + + E+GMS GEI +L ++V P Sbjct: 123 MVYAALSSERATLKNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGEIEYLANMVNP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AVI+ I +H+ N E I AK EI G K T+ +N DD F L+ A Sbjct: 183 KVAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLSTLRD---AERD 239 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG KN D + + E + G ++ +G H N + + + + Sbjct: 240 YDLITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAAIAVGT 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + ++ + LS F + G +T+I+++YNA+P SM I Sbjct: 300 VEGISMEGIKRGLSNFEAT----GMRQDIRKIGEYTVINDTYNASPDSM----EASLSIL 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 EGRRIAVLGDM EMG+L++ H + + + + G + + + Sbjct: 352 GRYEGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNS-DVIITVGESAVFINKEAEENGFD 410 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ + ++ + + GD ++ K+S F + + + E Sbjct: 411 VKNSYHFDNLEDAKKLLGEIMQSGDTMLFKASRGMKFEKFVEYVKE 456 >gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella putrefaciens 200] Length = 460 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 227/468 (48%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L Q + H +G + +S DSR + F A+KG +DGHDF A Sbjct: 1 MIPL-SLEVLSQHLGAHRVGN--DVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ +L+IP V D A+ + R + +A+TGS GKT Sbjct: 58 IENGAAALMVEREL-----ALNIPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN IGVPLTL R+ ++G+FELG +H GEI + + Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238 LVRP++A++ + AHL F +A AK+EIF L+ GT +N DD+F +++ KA+ Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADVMSVKAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 + + + D K ++ + + + G+S +V G H N L Sbjct: 233 PYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPLAGRHQVSNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + LS P +GR + + G LID+SYNANP S+ AAI Sbjct: 293 AAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQ----LGRIRLIDDSYNANPVSVGAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L +IS + VLGD+ E+G+ + H +L ++ I ++ +G A Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHTSQA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 H + ++ L I G V V+VK S S R+++ L Sbjct: 405 FGAEHHESVAVLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450 >gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] Length = 455 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 139/465 (29%), Positives = 221/465 (47%), Gaps = 21/465 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + ++ + + G +G + +S DSR++ + F A+KG ++DGH+F+ A Sbjct: 1 MIKL-SLTEIAEHLGGKLLGD--DFSIEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA V+V ++ + + VD+ A+ + R + +A+TGS GKT Sbjct: 58 AENGARAVLVERELPDA-----VAQIIVDNSQRAMGDIGAYVREKLAPVCVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS + G++NN IGVPLTL R+ FG+FELG +H GEI + + Sbjct: 113 SVKEMVATILSQQHQVLYTAGNFNNEIGVPLTLLRLQAGDQFGVFELGANHAGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F + +A AK+EIF + G +N DD+F ++ A S Sbjct: 173 LVKPSVAMVNNVASAHLEGFGSLAGVAKAKSEIFNHVATDGIAVINADDAFAAVMLAASQ 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 L T +F AD + ++ + VV G H N L Sbjct: 233 HL---TQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESVVLPLAGRHQVLNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I L + + LS+ P +GR R G T+ID+SYNANPAS+ AAI Sbjct: 290 SSICLALGMSLSFINQGLSLLEPVKGRMLPTR----LGRVTVIDDSYNANPASVGAAIDW 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +IS G R VLGD+ E+G+ + H +L + ++ G A Sbjct: 346 LQEIS----GNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFCVGELSEGASHAFG 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + H + E ++ L +I + ++VK S S R++ L Sbjct: 402 AAHHRNIDELVEKLMTYI-NESNADITILVKGSRSARMERVVEAL 445 >gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Pseudomonas entomophila L48] gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Pseudomonas entomophila L48] Length = 455 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 196/464 (42%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L A+ +G G+SIDSRS+ + F A+ GP +DGHD++ Sbjct: 1 MLKPMTLSQLTTALGARHVG--ADASFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V + I + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVERE----IADVDLPQLVVADSRLALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLAAILRTRGPVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRMGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G E+I AK EI EGL + GT LN D F++ + + Sbjct: 175 LTKPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGTAILNLADKAFDIWRKR-- 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G I SF + L G V + Sbjct: 233 -AGTHRILSFALDNPQADFHASDIGRDARGCPSFTLHGPDGSVPVQLNLLGIHNVSNALA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + A + + + R + +ID+SYNANP SM AAI +L Sbjct: 292 AAAAAHAVGLSLSGIA-AGLNAVQPVKGRTVAQVAPSGVRVIDDSYNANPTSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGTNMAHAVKAF-- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + T L +++ +++K S S ++ L Sbjct: 404 GEKGRHFATQAELIDAVRTEAASDTTILIKGSRSAAMENVVAAL 447 >gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 455 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 130/462 (28%), Positives = 203/462 (43%), Gaps = 17/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + + V+GISID+R+I + F +G H +GH F++ A +KGA Sbjct: 4 TLKQLAAWLN-EDMAAFGDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + D P+ VDD AL ++A A R KA I ITGS GKT+TK++ Sbjct: 63 GASLWQKD--EPNPPEGYPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDI 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L+ K IG++NN +G+P+T+ ++ D D + E+GMS GEI FL+ L RPH Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSKLARPH 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + VIT I AH+ + IA AK EI +G++ G +F + D+ + L AK L Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQHLQSV 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 FG N ++ S + + + TL + I Sbjct: 241 P---FGLESNNLLYADNIHANADGSHFTTHGMMEGDFFISV----LGRHQVKNTLVAMLI 293 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + R + L I+++YNA P S+KAAI ++ + Sbjct: 294 SHKLGLSNEQIRTSLEHVVLTDMRMQQILGTNGALFINDAYNAAPTSVKAAIQFMATSTI 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 E VLGDM E+G + FH LAE ++ I +V L G +L L L + Sbjct: 354 RPEKW--LVLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYKILEKRFEAE 411 Query: 426 YS----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + + + +V++K S ++ Sbjct: 412 RLLYTEDDYTAIIEKL-EQANESSIVLLKGSRGMKLETILKA 452 >gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 454 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 135/462 (29%), Positives = 205/462 (44%), Gaps = 15/462 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + I + G++IDSR I + F KG + DGH + A+ GA Sbjct: 5 TLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G D + PV V++ L AL +LA A T+IA+TGS GKTTTK+M Sbjct: 65 GATFFQRDST-LTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS + G+YNN IG+PLT+ + D + I E+GMS EI L+++ +P Sbjct: 124 LENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AVIT I +H+ + E IA AK EI GL+ G + D+ LLK L Sbjct: 184 FAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G S D Q + E V + G H +N + + + I Sbjct: 241 HQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTISIL---GEHNMRNATIAIAVGRI 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + R + + +I+++YNA+P SMKAAI LS + Sbjct: 298 MGLTDEQI---QQQLTSLKLTDMRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLSHMK- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424 G I VLGD+ E+GE S+ H + L I ++ G +A+ + ++ Sbjct: 354 ---GETILVLGDVLELGEQSRQLHESVGSYLENKGIHQLYTFGEGAMAIHEKGKAYVNEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + D L ++ S + VV+VK+S ++ L+E Sbjct: 411 IHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEALVE 452 >gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 453 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 213/469 (45%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P + +L + +QGHSIG + I IDSR++ P F A+KG +DGH F A Sbjct: 1 MIPTF-LKELAEVLQGHSIGD--NVPITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA ++ + + +P V D AL +LA R + ++A+TGS GKT Sbjct: 58 QSHGAVGLLSE-----CLLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G++NN IGVPLTL R+ + DF + ELG S G+I Sbjct: 113 SVKEMTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +IT +A AHLS F ++ +A AK EI L TGT ++ + K+ Sbjct: 173 LSRPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHATSHDWPKWKSVFR 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + K K DF + + + S ++ G H N L Sbjct: 233 GKRLWRFG-LEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLPLPGLHNVLNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + AD+ KALS P GR + L+D++YNAN SM AA ++ Sbjct: 292 ALAISVGADLSAISKALSELKPVPGRAFPM---ILGPGKLLLDDTYNANVGSMIAATEMM 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + G R+ V+GDM E+GE S++ H + ++ I V+ G+ + D++ Sbjct: 349 SNMP----GYRVMVVGDMAELGEQSKNCHKKIGNIMRQAGIDKVFSLGYLSKFMTDSIE- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 H + + L ++ L + ++VK S S +L+ + E+ Sbjct: 404 --HGEHFTQREKLIERVRDLLSEHSEISILVKGSRSSAMEKLVLDIKEQ 450 >gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 440 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 195/461 (42%), Gaps = 24/461 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + VN I DSR I + F +KG DGHDFI A Sbjct: 3 LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + VDD L A KLA ++K +IA+TGS GKTTTK Sbjct: 62 GAIISFSEKEVEQA-------HLLVDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS KTY G++NN IG+P T+ MP D + + E+GM H G+I FL+ L + Sbjct: 115 DMIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I AHL + E IA K I GL + + F K G Sbjct: 175 PELAVITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPIINAFIPDNQKIIRFG 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + F K + + + + G + A N ++ + Sbjct: 235 LPGEDLFIT-----------KLVEHKEKLTFETNFLDESITIPVPGKYNATNAMLAAFVG 283 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 KAL E R + L+ + YNANP +M+ + I Sbjct: 284 LHYGLSEAEIKKALKE---VELTRNRTEWKKAKNGADLLSDVYNANPTAMRLILETFQAI 340 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GR+IAVL DM E+G + H D+ + + I V+L G + L + + Sbjct: 341 PKNENGRKIAVLADMLELGPSAAQLHKDILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKA 399 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V Y +D L + + L D V+ K SNS ++ L Sbjct: 400 VSYFTDLDLLTESLSADLKPTDQVLFKGSNSMKLSEVVEKL 440 >gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 455 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 205/467 (43%), Gaps = 19/467 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ + I V + DSR + P F + + DGH ++ A G Sbjct: 3 LTLREMATILNA-PIQNEADVAVTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + D +PV V D L A +LA + ++A++GS GKTTTK+ Sbjct: 61 ATVALWQADH--QNVPSHLPVIIVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKD 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + + KT ++NN IGVP T+ MP D + + E+GM H G++ FL+ LV+P Sbjct: 119 FIAAIGQTSYKTVKTPENFNNEIGVPQTILSMPTDTELLVIEIGMDHPGDLTFLSKLVKP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA++T I AH+ F E IA K EI GL++ G + N D+ LL + Sbjct: 179 DIALLTMIGEAHIEFFKTRERIADGKMEIINGLKEHGHLVFNGDEP---LLLERVGQHAH 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 SFG + D + + + G + N L + + Sbjct: 236 LLHDSFGLNSTNDLF--ASEIDMTPVQASFKTNQSAQRFTIPMTGRYNVTNALSAITVGH 293 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +L +AL+ E R Q ++ + YN+NP + K + + Sbjct: 294 LLHISDKKIAQALAEAPITENR---TEWLDGQFGGKILSDVYNSNPTAAKEVLHFFADTP 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419 +G+RIAVLGDM ++G+ S + H L E L+ I+HV+L G + +L++AL Sbjct: 351 --TQGKRIAVLGDMLQLGDASPALHASLMENLNPDKIAHVYLVGEEIKSLEEALLPIYPA 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ + + + L + + L D +++K S+ ++N L + Sbjct: 409 GTVKRYAIDDPESLLKDLLADLTSDDTIMLKGSHGVHLENIVNQLKK 455 >gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate [Bacillus cereus Q1] gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus Q1] Length = 451 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 118/463 (25%), Positives = 206/463 (44%), Gaps = 18/463 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + I G ++G+ IDS+++ F I DGH+++ A+ Sbjct: 1 MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + IP+ VDD L AL +LA R +I ITGS GKTT K Sbjct: 60 GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + + Sbjct: 118 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT I +HL EEIA AK EI +GL G N D+ L ++ Sbjct: 178 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP----LLSQHINTL 233 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 SFG D + ++ +V HG + + + Sbjct: 234 GIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 290 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + K R++ + FT+I++++NANP+SMKAAI L ++ Sbjct: 291 --GQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 348 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + + + V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ Sbjct: 349 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 406 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + + DVV++K S ++ Sbjct: 407 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQK 449 >gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] Length = 460 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 118/463 (25%), Positives = 206/463 (44%), Gaps = 18/463 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + I G ++G+ IDS+++ F I DGH+++ A+ Sbjct: 10 MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + IP+ VDD L AL +LA R +I ITGS GKTT K Sbjct: 69 GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + + Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT I +HL EEIA AK EI +GL G N D+ L ++ Sbjct: 187 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP----LLSQHINTL 242 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 SFG D + ++ +V HG + + + Sbjct: 243 GIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 299 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + K R++ + FT+I++++NANP+SMKAAI L ++ Sbjct: 300 --GQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + + + V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ Sbjct: 358 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 415 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + + DVV++K S ++ Sbjct: 416 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQK 458 >gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] Length = 492 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 187/465 (40%), Positives = 259/465 (55%), Gaps = 4/465 (0%) Query: 4 LWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LWT D A G G+SIDSR++ P + F A+KGP++DGHD++ A+ Sbjct: 10 LWTAADAAAATNGRHPTGRTPGHWMATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDAL 69 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +V+ + PV VDD L AL L ARL ++ +IA+TGSVGKT Sbjct: 70 AHGAAAALVSR--LPGNVPPEAPVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTG 127 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L + L + T+A GS NNH GVPL+LAR P D +G+FELGM+H GEI L+ + Sbjct: 128 TKEALKLCLDARGPTFATQGSLNNHWGVPLSLARFPADAHYGVFELGMNHAGEIGPLSRM 187 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+P +A+ITT+ HL F+ +E IA AKAEIFEG+ GT LN D+ F L A + Sbjct: 188 VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAART 247 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ I+SFG + AD L + + S + ++G+ ++ G H N L L Sbjct: 248 QGLTRIWSFGTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLL 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 VS DV A + LS P +GRG R R AL +G FT+IDESYNA+P S+ AA +VL Sbjct: 308 AVSAAEGDVAAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLG 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + P GRRIAVLGDM E+G + S H LA+ V+ G ++ L D LP + Sbjct: 368 KADPGAGGRRIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKFLFDRLPAA 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++E L + ++ GDVV+VK S R+++ L+ Sbjct: 428 LRGRHTEDSAALAPLVADAVRAGDVVMVKGSAGSRMSRVVDALVA 472 >gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. SR1/5] Length = 462 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 112/475 (23%), Positives = 198/475 (41%), Gaps = 23/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ + G G + V I+ DSR + F + G D H FI Sbjct: 1 MKNL-TLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++ GA + ++ P V L A+ +A + ++ ITGSVG Sbjct: 60 QVMEAGALATLSER----TLEGADHPYIQVGSSLQAVKDIAEFYLEQLDIPVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L +T G++NN +G+PLT+ R+ + + + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFEL 234 + +P VIT I HL N + + AK EIF+ +++ + + D + Sbjct: 176 AKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYVKRNIVLNGDDDKLSTVKEYNS 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 ++ G + ++ + C + M + ++ V G HM Sbjct: 236 MQPVFFGNGENASVTCENVESRGLKGMSCDICLKG-KMAENGEFQTFHVDIPMPGRHMVS 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + + + P GR F ++D+ YNANP SMK Sbjct: 295 NALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIE----TDKFMIVDDCYNANPMSMK 350 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A++ VL G GR++A+LGDM E+G + H + I G + Sbjct: 351 ASLDVLQD----GLGRKVAILGDMGELGTDEAALHEGVGVHAGQCRIDACICVGPLAAHI 406 Query: 415 KDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ V + ++ L + + + GD ++VK+S+ F ++ L E Sbjct: 407 AEKASQTNPDLTVIREKDLESLLKNLNTYVKPGDTILVKASHFMKFENVVKALQE 461 >gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 479 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 199/467 (42%), Positives = 261/467 (55%), Gaps = 2/467 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT D + + V GISIDSR++AP +A+FAIKG +DGHDF+ A+ Sbjct: 5 PLWT-SDAMAEAMRAAASGSLPRDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV A + P+ VDDVL L +L AAR R A IIA+TGSVGKT+T Sbjct: 64 AGAALAVVERAQRAKFAA-DAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + +T+A + S+NNH GVPL+LAR P DV + +FE+GM+H GEI L +V Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+ +ITT+ P HL FSGIE IA AKAEIF GL GT LN D++ F+ L + Sbjct: 183 RPHLVIITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGTAVLNRDNAMFKRLTDSARKA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+ + SFG AD +L ++ S + + G+ + G H+A N L L Sbjct: 243 GVGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ A ALS P GRG R Q TLIDESYNANPASM AA+ VL Q Sbjct: 303 AETVGADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQ 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +GRRI VLGDM E+G H DLAE + I V+ G + L DAL Sbjct: 363 VPVGPQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+ET L + +++ GDV+++K S ++ L + FP Sbjct: 423 RGGYAETAAALESQVVAAIRAGDVLMIKGSLGSRMKTIVTALEKRFP 469 >gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] Length = 467 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 205/468 (43%), Gaps = 17/468 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T +++ +A G IG G + +S DSR +AP E F A++G +DGHDFI+ AV + Sbjct: 1 MFTLNEIAEATGGRMIGEGA-GEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQ 59 Query: 64 GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G + + V D L AL LA R R + +TGS GKTTT Sbjct: 60 GITVFLAEESWAERHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L+ G+ NN IG+PLT+ R+ + +FE+GMS GEI L + Sbjct: 120 KEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +IT PAHL +E +A AK E+F L+ N DD L + Sbjct: 180 EPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDP----LVSACPTH 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T +FG ++L +V G H N L Sbjct: 236 LNVTRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAA 295 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + L F P + R + A TLID+SYNANPASM AA++ L + Sbjct: 296 AHALGVSGEVIRQGLEEFSPYDKRFQLEEVAG----VTLIDDSYNANPASMAAALTTLKE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + GEGR +AVLGDM E+G ++ H +L ++ + + + L G + + Sbjct: 352 L--QGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGS-VDRLCLLGKLIDETAKGALEAG 408 Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + L + + + GD ++ K S ++ + + Sbjct: 409 LPETDLVLGRDHEQLAQELLTFVQPGDCILFKGSRGMKMDKVAKAVRQ 456 >gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Enterococcus sp. 7L76] Length = 457 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 S G+RIAVLGDM E+G S + H ++A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PTNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] Length = 450 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 137/467 (29%), Positives = 223/467 (47%), Gaps = 24/467 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ +G + + DSR+I + F A+KG ++DG+ F A++ Sbjct: 1 MMMLSEAAAALGVQHMG--ADVQFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALEL 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ V + P V D AL +LA R + ++A+TGS GKTTTK Sbjct: 59 GAAAVLVSDASVQAE-----PRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTK 113 Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 EML+ LS + +A G+ NN IGVPLTL +M + + E+GM+HLGEI +LT Sbjct: 114 EMLSAILSVVAGAKASVHATYGNLNNDIGVPLTLLKMQPAHQYAVVEMGMNHLGEIDYLT 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 H+ +P +A+I AH+ E IA AK EIF GL+ G +N D + K+ + Sbjct: 174 HIAQPDVALINNAGIAHIGELGSRENIAKAKGEIFAGLKSDGVAVINADSDYAYYWKSLN 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I +FG AD R +++ + + + + V + G H N L Sbjct: 234 PHRKI---VTFGLKNPADVSAR-YQENDGYASVVLATASDEVSVQLNVQGEHNISNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ F GR +ID++YNANP SMKAAI+V Sbjct: 290 GATAYALGVSLNDIGRGLASFTGVYGR---LERKAGINGAVVIDDTYNANPDSMKAAINV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L++++ G++I VLGDM E+G ++S H ++ ++ ++ G + + Sbjct: 347 LAKLA----GKKILVLGDMGELGADAKSMHAEVGAYAKAAGLTTLYCLGNLSVETARSFG 402 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + + +L G V+VK S R++NLL+ Sbjct: 403 AG--AEHFSSPEAIAQAVLPALAQGTTVLVKGSRFMQMERVVNLLVA 447 >gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] Length = 455 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 228/469 (48%), Gaps = 27/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL T L + IG P + + DSRSI PQ F A+KG +DGHDF A Sbjct: 1 MIPL-TLLQLSHRLDARLIG--PDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA ++V ++ L +P V D A+ ++ R + IA+TGS GKT Sbjct: 58 VENGANALLVTHEL-----PLDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS K G++NN IGVPLTL R+ +FG+FELG +H GEI + + Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEEGDEFGVFELGANHRGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F + +A+AK+EIF L GT +N DDSF ++K Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMKE--- 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A +F AD Q + + ++ + + V G H N L Sbjct: 230 AASEHKQLTFAIEAAADLQGSGLEPDLLGRYCFKMSYLNQEVSVTLPLSGRHQVSNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 GI L + + LS+ P +GR + G +ID+SYNANPAS+ AAI Sbjct: 290 AGICLTLGLPLSEIVSGLSLLEPVKGRMLPTQ----LGRVRVIDDSYNANPASVSAAIDW 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I +G R VLGD+ E+G+ + H +L E+ + I ++ G A Sbjct: 346 LQEI----DGYRCLVLGDLGELGDNASLLHTELGELAKIRGIEALFSLGELSANASTAFG 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLL 465 + + ++ + + + + GDV V+VK S S R++ L+ Sbjct: 402 ----GVHHQELEQVVNNLVNHINQLQGDVTVLVKGSRSAKMERVVEALI 446 >gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] Length = 463 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 153/463 (33%), Positives = 237/463 (51%), Gaps = 6/463 (1%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + A++G +G + ISID+R++ P + F AIKG ++DGH F+ A K Sbjct: 1 MWCAKSMGAAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV+ V + P+ V D L AL+ +A ++A +IAITGS GKTTTK Sbjct: 60 GAVAAVVDEAYVPTADCG--PLVAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L+ ALS K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ + R Sbjct: 118 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 177 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT + PAHL F +E + +AK E+F ++ LN+D ++ ++A + + Sbjct: 178 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYC 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I SFG AD Q+ + ++ S + + + + + + Sbjct: 238 A-RIISFGVGAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAA--VG 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + D+ A A+ F P EGRGK + L+D++YNANP SM AAI LS + Sbjct: 295 RAFSIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNL 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RR+A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ + Sbjct: 355 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHILALYDVLPQHLS 414 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ + GD V+VK S + ++ LLE Sbjct: 415 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457 >gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] Length = 476 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 154/463 (33%), Positives = 237/463 (51%), Gaps = 6/463 (1%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + A++G +G + ISID+R++ P + F AIKG ++DGH F+ A K Sbjct: 14 MWCAKSMGAAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 72 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV+ V + P+ V D L AL+ +A ++A +IAITGS GKTTTK Sbjct: 73 GAVAAVVDEVSVPTADCG--PLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTK 130 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +L+ ALS K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ + R Sbjct: 131 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT + PAHL F +E + +AK E+F ++ LN+D ++ ++A + + Sbjct: 191 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYC 250 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I SFG AD Q+ + ++ S + + + + + Sbjct: 251 A-RIISFGVGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAA--VG 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + D+ A A+ F P EGRGK + A L+D++YNANP SM AAI LS + Sbjct: 308 HAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNL 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RR+A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ + Sbjct: 368 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLR 427 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ + GD V+VK S + ++ LLE Sbjct: 428 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 470 >gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 454 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 210/472 (44%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +++ + ++ I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LSLYEVAKVVEAQNIISEFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFES 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKEIS------GHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIHLLSEIAQ 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIAV+T I AHL F E+IA K +I +G+ G + D L + Sbjct: 176 PHIAVVTLIGEAHLEFFGSREKIAQGKMQITDGMNSHGILIAPGDPIIDPYLPENQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++ ++ + + + G + A N ++ + Sbjct: 236 ----------FGENQEIFVKSIEESKNSLSFTTNVLNQALTLPLSGKYNATNAMLAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R ++ + YNANP +M+ + +QI Sbjct: 286 KLLAVADEDIIEALEH---VQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFTQI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 +P+ +G++IA+L DM E+G S H L E L+ +I+H+ G + AL + Sbjct: 343 APNQDGQKIALLADMKELGPSSVDLHCQLIEALNPDDINHLIFYGKDIEALAQLASQLYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + + + L +Q L D ++VK S+S ++N LL Sbjct: 403 IGKVFFFRKTDTEDQFEDLCHHVQEILGANDQILVKGSHSMNLEEVVNRLLA 454 >gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] Length = 452 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 209/468 (44%), Gaps = 26/468 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + + + +N I DSR I + F ++G DGH+FI A Sbjct: 3 LTLQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ + P V D L A LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSEKNITS-----DYPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L++L Sbjct: 117 DMIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTH 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIAV+T I AHL F E+IA K +I +G++ G + D L K + Sbjct: 177 PHIAVVTLIGEAHLEFFGSREKIAEGKMQITQGMDGHGILIAPADKIINSFLPEKQKVIR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 AD + + ++++ + E+ G + A N ++ + Sbjct: 237 ----------FGADEDIFVTELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVG 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL+ R ++ + YNANP +MK + S I Sbjct: 287 KLLNVSEEKIISALAQ---LNLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSSI 343 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + G++IAVL DM E+G+ + H + L I ++L G + AL D + + Sbjct: 344 PANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYS 403 Query: 424 V---HYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V +Y + +D L IQ L D +++K SNS +++ L Sbjct: 404 VGKWYYFAQADQVDELTEQIQKVLGPNDQILLKGSNSMKLAQVVECLE 451 >gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] Length = 470 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + ++ Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468 >gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5] gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5] Length = 445 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 207/463 (44%), Gaps = 30/463 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + ++G +G P V SIDSR+I E F +KG +D H+FI A +KGA Sbjct: 4 TSQTLAKILKGSLVG-SPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ ++ G + V L +L ++A R K +I + GS GKTTTKE+ Sbjct: 63 VGVISEREVDVPPGKF---LIKVRSTLESLREIAKFKRENFKGKVIGVAGSAGKTTTKEL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L+ LS K Y G+ N+ +G+PL +A ++ DF + E G S GEI+ L + +PH Sbjct: 120 LSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKNLIEITKPH 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +ITT+ HL F +E + AE+F + + K + G Sbjct: 180 VRLITTLGEEHLEGFGSLEGVIWGNAEMFCRISDNFYAVIPGKFLDTLFFLPKKISFGE- 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + Q E S V + + + + +N+L ++ + Sbjct: 239 -------------RGELQAQNVEVSEKGVSFEVEGEKFFISVPSLGLVENILACFCVLKV 285 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + +AL F P EGR N F LID++YNANP S++ AI + Sbjct: 286 LGFTLKEFKEALKEFSPVEGRM----KVFNLKNFILIDDTYNANPVSLRNAIKSVGAFKR 341 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV 424 + +LGDM E+GE S+ H ++ +L+ I G + D+ +S Sbjct: 342 DK----VFILGDMLELGEHSKELHEEVGRLLNTVKGIRLAIFYGDEMKYAYDSFNKSKKF 397 Query: 425 HYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLL 465 Y++T + + FI+ +L +G V++K S +++ L Sbjct: 398 -YAKTKEEMLQFIEENLKEFEGCAVLIKGSRGMKLEEVVDFLR 439 >gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella silvestris BL2] gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella silvestris BL2] Length = 498 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 195/463 (42%), Positives = 274/463 (59%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT L+ ++ G P+ G+SID+R++ P + FFAI G + DGHD++ A++ Sbjct: 23 PLWTGLGLVAPLEARISGGAPRRGATGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALE 82 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA VV+ S+ L DDVL AL +L VAAR R++A I A+TGSVGKT+T Sbjct: 83 KGALAAVVDEAHAESLARLGPLYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTST 142 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L +ALS+ +T+A + SYNNH GVPLTLARMP +FG+FE+GM+H GEI LT +V Sbjct: 143 KEALRLALSAAGRTHASVASYNNHWGVPLTLARMPRQTEFGVFEIGMNHQGEITPLTRMV 202 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+AP H+ NF+G+E IA AKAEIF GLE G L D+ FE L A + Sbjct: 203 RPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPGGVAILPADNPQFERLAAAAKRS 262 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG K+A+ +L + ++ S +E + G+ + G H+A N L L Sbjct: 263 AAGLVTSFGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVLLA 322 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D A + L+ F + GRG+R G FTLIDESYNANPASM+AA + Sbjct: 323 AKALGVDPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLAGA 382 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++P GRR+AVLGDM E+G + H LA+ L+ + V+ +G L DALP ++ Sbjct: 383 LAPPSPGRRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVFAAGPLCKHLFDALPAAM 442 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + E + + +++ GD+V+VK SN ++ L Sbjct: 443 RGEWRENAQMIAPAVAAAVHAGDLVIVKGSNGSKMSAVVEALK 485 >gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] Length = 462 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 180/457 (39%), Positives = 258/457 (56%), Gaps = 16/457 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LWT ++ +A+ G G V+G+SID+R++ P + F + G DGHDF+ AV Sbjct: 3 DALWTADEIAEAVGGQVAG---DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAV 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120 GA V+ ++ P V D AL L VAAR R + A+TGSVGKT Sbjct: 59 ANGAAGVLAAR-------AVDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + + L K +A + SYNNHIGVPLTLARMP D + +FE+GM+H GEI L+ Sbjct: 112 SVTRAIEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSG 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 VRPH ITT+ P H+ NFS E +A AKAEI GL+ G LN D+ +F+ LK ++ Sbjct: 172 FVRPHAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEA 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +G T++SFG++ A +L ++ + + V L+G+++ H G H N L Sbjct: 232 EKVGA-TVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCV 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ L +TA+ AL+ F P EGRG + G FTL+DESYNANP SM+AA+ Sbjct: 291 LLMLEALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKT 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GRR+ L DM E+GE S FH +LAE ++ N+ V+L+G H+ +L +ALP Sbjct: 351 LG--ARKVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALP 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + Y+E + L + ++ GDVV+VK SN Sbjct: 409 PTRRGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGSK 445 >gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 476 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 170/476 (35%), Positives = 246/476 (51%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT + +A G Q G+SID+R++ + F A+ DGHDF+ A Sbjct: 1 MT-LWTSAEAAEATGGT---TTSQWNATGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V+ V P+ V+DV GAL L A R R ++A+TGSVGKT Sbjct: 56 LDKGAAAALVSH--VPPGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS + +A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L Sbjct: 114 STKEMLLAMLSDQGRAHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + PH+A+ITT+A AHL F I IA KA IFEG+ G LN D +L AK+ Sbjct: 174 MAAPHVALITTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQ 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +FG+ DF+L + + + + ++ + + G H A N L + Sbjct: 234 DCRL-RDITFGEHGY-DFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAI 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI----DESYNANPASMKAA 356 +++ L DV A+ +L + P +GRG+R R L+ L D+SYNANP SM AA Sbjct: 292 AVMAALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAA 351 Query: 357 ISV------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + V + I +GRRIA LGDM E+G + H LA + + I + G Sbjct: 352 LEVLAAAEVTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPV 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + AL DALP + E + +++ + GDVV+ K S S +++ + + Sbjct: 412 MRALYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVLAKGSLSMKLACVVDAIRK 467 >gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 453 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 204/469 (43%), Gaps = 19/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T DL + + I + GI+IDSR + + F G + DGH+FI A Sbjct: 1 MKYLVT--DLEKILNAKKANITSNVEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA + D S + + V+D A+ LA A IAITGS GKT Sbjct: 59 FEKGAAASLSLKDDFVSENN----IIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+++T LS+ K + G++NN +GVP+T+ P D + + E+G G++ FL+ Sbjct: 115 TTKDIITSVLSTKYKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADDFGQLDFLSK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P VIT I +H+ F E IA AK EI G++K G N D E+L Sbjct: 175 LVEPDYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGD----EVLIKTLV 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S G++ D L + ++ ++ + + G + Sbjct: 231 DSSEINATSCGENSYNDIILESYTITRDKIDFKLNISDEQYFTKLKGKHNLYNIMFATAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ + E G R + + +I+++YNA+P SMKA + V+ Sbjct: 291 ----ASKIGLTNEEIHKAIENTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVV 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDAL 418 S + VLG M E+G ++H ++ E +S +I V G + + Sbjct: 347 SSYDDFD--YKTLVLGSMFELGPNEVNYHGEVGEYISENTNDIDLVISVGDLAENITKQI 404 Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I + T + +++++ +V++ K+S S +I + + Sbjct: 405 KNDKIKTLHFPTTAEVSEYLKNNKHKNEVILFKASRSMKLETIIEEITK 453 >gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] Length = 455 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 147/467 (31%), Positives = 220/467 (47%), Gaps = 23/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q + G IG + + DSRSI + F A+KG +DGHDF A Sbjct: 1 MIRL-TLSLLSQRLNGRLIG--SDTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V+ ++ L IP V D A+ ++ + + +A+TGS GKT Sbjct: 58 LENGASALLVSRELA-----LDIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS K G++NN IGVPLTL R+ D ++G+FELG +HLGEI + + Sbjct: 113 SVKEMVASILSQHHKVLYTAGNFNNEIGVPLTLLRLEGDEEYGVFELGANHLGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F +E +A AK+EIF L G +N DD F ++++ Sbjct: 173 LVKPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHLSADGIAVINLDDPFADVMR---G 229 Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A T +F AD + + + + + G H N L Sbjct: 230 AASQFTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I L ++ + L + P +GR + G +ID+SYNANPAS+ AAI Sbjct: 290 TAICLSLGLSLEEVLSGLKLVEPVKGRMLPHE----LGRVRIIDDSYNANPASVGAAIDW 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I +G R VLGD+ E+G+ + H +L E I ++ G A Sbjct: 346 LQEI----DGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFTLGELSENTAAAFG 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465 + + L I GDV V+VK S S G R++ L Sbjct: 402 GQHQQELAPLVLCLINTINQL--QGDVTVLVKGSRSAGMERVVEALK 446 >gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] Length = 472 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 130/470 (27%), Positives = 208/470 (44%), Gaps = 16/470 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T +++QA G P +GI+IDSR+ + F AI G DGHDF+ A+ G Sbjct: 7 FTLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGG 66 Query: 65 AGLVVVNTDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +V++ S L + V D AL K+A R +I AITGS GK Sbjct: 67 VRGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGK 126 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE+ L++ + + G++NN IG+P TL + + + ELGM+H GEI LT Sbjct: 127 TTTKELTAAVLAAKYRVHKSTGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIARLT 186 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P I VIT + P HL +E + +AK E+ E + + + L + Sbjct: 187 QICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENMA-----NKTAVLNLDDKLVSTL 241 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 FGK A + + K +E + L+ + + V G M N L Sbjct: 242 ADKYQGETVLFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNALAA 301 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + AL +P +GR LID++YNANPAS AA+ Sbjct: 302 AAVGVSAGVSPKEIRDALETVNPVKGRQN---VVSLGNDVQLIDDAYNANPASFAAAVMT 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L ++ +GR I + DM E+G+ S H++L + + +S +++SG++ Sbjct: 359 LQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYAGWTAKGAR 418 Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I + + + + ++ D ++VK SNS G ++ L + Sbjct: 419 EAGMGIDQVFIDEKPNIVTRLAEAVQAKDRILVKGSNSTGMSEVVQGLKD 468 >gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 1005 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 192/441 (43%), Gaps = 10/441 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85 + IDSR + E F A+KG + DGH FI +KGA +V+ GS+ P Sbjct: 563 VVIDSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGF 622 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD + L +LA R + ++AI GS GKTTTKEM+ L + + + G+ NN Sbjct: 623 IVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLGTGFRVHMSEGNRNN 682 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL ++ D D + E+G++H GE+ L + P A++T I HL ++ Sbjct: 683 HLGVPLTLLQLRGDTDIAVVEMGINHPGEMVLLAAIGSPTHALLTNIGHEHLEFLVDLDG 742 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + A + + + A S G +S+++ + Sbjct: 743 V-EAAEIPLFDYLRQSGGIAFVNMDDPRISAAASGMAGSVPYGMATRSEHSCWARDISVN 801 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + S V + G H N + + + + L P G Sbjct: 802 SAGALSFLLCSIAGSEPVTLNFTGKHNVMNAIAAATVGHYFGLSLCQIREGLERLTPAPG 861 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + L+ +++++YNAN SM+ AI L + G G+R+AVLGDM E+G Sbjct: 862 WKRL--EVLDACGVRILNDTYNANSDSMRKAIDALCDLP--GAGKRVAVLGDMLELGLAG 917 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H + L ++ ++ G A+P H E+ + L +++ L +GD Sbjct: 918 EVEHQAIGNYLQQSSVDLLFTFGESARLFGRAVPERYRGH-FESREALLEALRTVLQEGD 976 Query: 446 VVVVKSSNSCGFYRLINLLLE 466 +V+ K S ++++ L+ Sbjct: 977 IVLFKGSRGMKLEQVVDALIN 997 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 96/477 (20%), Positives = 165/477 (34%), Gaps = 41/477 (8%) Query: 7 FHDLLQAIQG-HSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I +G G ++ ++ DSR + P F AIKG DG FI AV++G Sbjct: 15 LEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIRSAVERG 74 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122 A V+ S +L V D AL + A + + II +TG+ GKTTT Sbjct: 75 AAAVICEE--FPSDPALPCLYIKVADARKALAEAARIFYGKASDQLLIIGVTGTNGKTTT 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 +++T L++ + IG+ IG L + + E Sbjct: 133 AKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQMLEAGCKAAVME 192 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH ++ + + R H A+ T + HL + + A AK ++F+ L G LN Sbjct: 193 V-SSHALVLQRVYGI-RFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQLSPDGFAVLN 250 Query: 227 YDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD + E + A+ + T+ + + +L + E V Sbjct: 251 IDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTIVLHFPDESV 310 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + N++ L +I T +A + + R + Sbjct: 311 EMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGESRQGWMAFV 370 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ A+ L + R I V G G ++ V Sbjct: 371 DYAHTPDALFKALDALHGLK-EDASRLIVVFG----CGGNRDKEKRSEMGRIASEIADEV 425 Query: 405 WLS-----GFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + DA+ R I + L GD+++V K Sbjct: 426 IITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGKG 482 >gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 451 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 120/463 (25%), Positives = 212/463 (45%), Gaps = 20/463 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + + G + ++G+ IDS+SI F I DGHD++ A+ Sbjct: 1 MNLKKLEEVVDGEGLQESFHYIEIHGVCIDSKSIKEGNVFVPII--RVKDGHDYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VDD L AL +LA R +I ITGS GKTT Sbjct: 59 NGAVASLWKKSYG--TPPKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++++ LS+ + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + Sbjct: 117 KDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSIIA 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I +IT I +HL EEIA AK EI +GL+ G N D+ L K+ L Sbjct: 177 QPDIVIITMIGHSHLETLGSKEEIAKAKLEIIDGLKDEGLCLYNGDEP----LLLKNKNL 232 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T +FG+ D + ++ +V HG N+L + Sbjct: 233 SSITCKAFGEKYTNDLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-----NILNAIVG 287 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +++ K R++ + FT+I++++NA+P+SMKAAI L Sbjct: 288 IAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQT 347 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 ++ + + V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + + Sbjct: 348 LNAYKKKM--IVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKY 405 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 V + + + + D++++K S ++ Sbjct: 406 DIGKVQSFNSKAKIAEEVLKVITKKDIILLKGSRGMALEEIVQ 448 >gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] Length = 452 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 120/462 (25%), Positives = 211/462 (45%), Gaps = 17/462 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL + + I +V + GI+IDSR + + F G + DGHD+I A +KGA Sbjct: 5 VKDLEKILNAKKINLVDNKEITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D S + + V+D A+ LA I+AITGS GKTTTK+++ Sbjct: 65 ASLSLKDDFVSDNN----IIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTTTKDIV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 T L + K + G++NN +GVPLT+ P D D + E+G + G++ FL+ LV+P Sbjct: 121 TSILETKFKVHKTQGNFNNELGVPLTILAAPEDSDILVLEMGADNFGQLDFLSKLVKPDY 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT I +H+ F IA AK EI G++K G N D+ + L Sbjct: 181 TIITNIGESHIEFFGSRAGIAKAKFEITNGMKKDGFFVYNGDEPLLKELVEN----SSIN 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S G++ D L + ++ ++ + + G H N++ + I + Sbjct: 237 ATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFSTTLK--GKHNLFNIMFAVAIAKKI 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A+ + + R +I+++YNA+P SMKAA+ V+S ++ Sbjct: 295 GLTNEEIRHAI--DNISKITNMRLESITYGEDSLIINDAYNASPTSMKAAVDVISDLNDF 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDAL-PRSIH 423 + VLG M E+G +H + ++ +I+ V G + D + + I Sbjct: 353 E--FKTLVLGSMFELGPNEVEYHSGVGTYINNNSRDINLVISIGDLAKNITDNINNKDIS 410 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + T++ + +++++ +V++ K+S S +IN + Sbjct: 411 TLHFSTVEEVTDYLKANKHKNEVILFKASRSMKLETIINDIK 452 >gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] Length = 470 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468 >gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 454 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 209/472 (44%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +++ + ++ I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LSLYEVAKVVEAQNIISEFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V D L A +LA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKEIS------GHPYILVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ +V+ Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIVQ 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIAV+T I AHL F E+IA K +I +G+ G + D L + Sbjct: 176 PHIAVVTLIGEAHLEFFGSREKIAQGKMQITDGMNSHGILIAPGDPIIDPYLPENQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++ ++ + + G + A N ++ + Sbjct: 236 ----------FGENQEIFVNSIEESKNSLRFTTNVLEQALTLPLSGKYNAINAMLAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + ++AL R + + + ++ + YNANP +M+ + +QI Sbjct: 286 KLLAVAEEDILEALEHIQLTGNRTEWKKASNGAD---ILSDVYNANPTAMRLILETFAQI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 P+ G++IA+L DM E+G S H L + L+ +I H+ G + L + Sbjct: 343 VPNQGGQKIALLADMKELGPSSVDLHCQLIQALNPDDIDHLIFYGQDIEPLAQLASQMYP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + + + L+ +Q L D +++K S+S ++N LL Sbjct: 403 IGKVFFFKKTEAEDQFEDLYHHVQEILGSNDQILIKGSHSMHLEEIVNRLLA 454 >gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes str. Scott A] Length = 470 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468 >gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] Length = 454 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 214/471 (45%), Gaps = 23/471 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L ++L+ + + + I + V GI+ DSR I+ E F A++G ++DG++F AV Sbjct: 5 ISLKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAV 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KGA ++V+ ++ I S +IP F V D L A K+A R + +IA+TGSVGKTT Sbjct: 65 EKGAIAIIVDREVPV-IASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE++ LS K + +YNN IGVP TL + D+ + E+ M GEI LT + Sbjct: 124 TKELIAAVLSQRGKVHKTRANYNNEIGVPKTLLELDKSHDYAVIEMAMRAKGEIALLTEI 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP + +IT + AH+ E IA+AK E+ E + LN+D+ K Sbjct: 184 ARPTLGIITNVGTAHIGRLGSTEAIAAAKCELLEQMSPDTIAILNHDNPLLIETAHKVWQ 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T G Q L+ + + G H A N L L Sbjct: 244 GETLTYGLEGGD------------LVGQLIDAQTLRVEGINFPLPIPGRHNALNYLAALA 291 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +L D + L+V P R L+DE+YNA SM AA+ +L Sbjct: 292 VAKVLNLDWTPLTEGLTVNLPSGRS----RRHQLPNDVLLLDETYNAGLESMIAALELLK 347 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419 Q IAVLG M E+G+ S FH + E + NI H+ + + Sbjct: 348 QTPGQR---HIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLTDDPQAQEIAVGA- 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + +T L +Q + GD ++ K+SNS G R++ LL + P Sbjct: 404 DGVTTQCWQTHQALVQQLQEMIKPGDRILFKASNSVGLNRVVESLLNDQPV 454 >gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] Length = 455 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 207/465 (44%), Gaps = 22/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L I G + +G+S D+R + F A+KG ++D HDF+ +KG Sbjct: 4 TLGQLHLWING--SKMTADASFDGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGV 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV + +P V D AL +A R ++ +TGS GKTT KEM Sbjct: 62 AAVVAERI----PENYPLPALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEM 117 Query: 126 LTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + + G++NN IGVPLT+ RM + + ELGM+H+GE+ +L+ + Sbjct: 118 IATIFKTAFGEDGRLATSGNFNNDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P + ++ H + +A + L + GT D+ + +L + Sbjct: 178 QPTVGLVNNAQREHQEFMQTVLAVAEENGTVIRSLPENGTAVFPADEPYSDLW---TRYA 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G + I +FG K+A ++K + + ++ +GKS V G H +N L Sbjct: 235 GARQIRTFGLGKDA-KVSGQYKNEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAAC 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 D T +K L F P GR LID++YNANP S++AAI VL++ Sbjct: 294 ARSAGIDWQTIVKGLEAFSPVHGR---LEKKNAFNGALLIDDTYNANPDSVRAAIDVLAE 350 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +S G+ I VLGDM E+G + FH+++ E ISH + G A S Sbjct: 351 LS----GKGIFVLGDMGEVGNDGERFHVEVGEYAKERQISHFFTFGEMARFASKAYGNSG 406 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + M+ + ++ L V+VK S R++N L+ + Sbjct: 407 R--HFDNMNEMNAVLEQLLEPDMTVLVKGSRFMKMERVVNQLMNK 449 >gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1346] Length = 474 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 230/469 (49%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I + F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 254 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 137/466 (29%), Positives = 208/466 (44%), Gaps = 16/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + I + + G++IDSR+I F KG + DGH F+ A Sbjct: 1 MIEV-TLQQIQEWIPCDIDSQYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG P+ VDD L AL +LA A +I +TGS GKT Sbjct: 60 LKDGAGASFYEKGHDIDDNVKG-PIIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ L + K G+YNN IG+PLT+ + +D + I E+GMS EI L++ Sbjct: 119 TTKDMIESVLHTEFKVKKTQGNYNNEIGLPLTILELDLDTEISILEMGMSGFHEIELLSN 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IAVIT I +H+ + E IA AK+EI GL+K GT + D+ E K Sbjct: 179 IAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKKEGTFIYDGDEPLLEPHVKK-- 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + S G ++ ++ + + NM Sbjct: 237 -IKHAKCLSVGLKQDNALVCEVEHSENDGIAFSINGNEHYKLPIL------GIHNMKNAA 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++I + + G R + T+I+++YNA+P SMKAAI L Sbjct: 290 IAIAIGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQ+ EGR+I VL D E+GE S+S H ++ L NI + G + D + Sbjct: 350 SQM----EGRKIIVLADSLELGENSRSMHEEVGAYLEGKNIHTLLTYGKDAKYISDIGGQ 405 Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + HV Y L ++ ++LV D V+VK S ++N L+ Sbjct: 406 FVDHVEYFIDKQQLTQYLINNLVANDKVLVKGSRGNKLEEVVNKLI 451 >gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula stellata E-37] gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula stellata E-37] Length = 477 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 178/477 (37%), Positives = 249/477 (52%), Gaps = 17/477 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A G +G+SID+RSIAP + F A+K DGHDF+ A++K Sbjct: 2 LWTAAEAAAATGGRV---ASDWVASGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEK 57 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + S + VDDV L L AAR R ++A+TGSVGKT+TK Sbjct: 58 GAAAALVSR--IPEGVDNSEKLLLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS +A SYNNH GVPLTLARMP D DF + E+GM+H GEI L + R Sbjct: 116 EMLRTVLSEQGTVHAAEKSYNNHWGVPLTLARMPKDADFAVIEIGMNHPGEIAPLARMAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A++T +APAHL+ F +E IA KA IFEGLE G N D + +L+ K+ A Sbjct: 176 PHVAMVTIVAPAHLAAFENLEGIAREKASIFEGLEPDGIAIYNGDLAVSGILRDKA-AET 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SFG++ +L + + + + G H A N + + ++ Sbjct: 235 ARKSISFGETAGTHHRLTSVQVMDACTVATGRAWRVPLLFKVMVPGRHFAMNAMGVMAVI 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAAISV 359 S L D A+ AL+ ++P GRG R + L+ L ID++YN+NPAS+ AA+ V Sbjct: 295 SALRLDRALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASLGAALEV 354 Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 L + +GRRIA LGDM E+G + H LA + I V G + A Sbjct: 355 LAAAGTHDHVGRRDKGRRIAYLGDMKELGAQEVTLHEALATSPWIEKIDLVHCVGPLMRA 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 L LPR H++ET D + + L GDVV+ K S S G R+++ + + A Sbjct: 415 LWMKLPREKRGHWTETADKMAEGVVRDLDAGDVVLAKGSLSMGLGRVVDAIRKMRQA 471 >gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0031] Length = 474 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 225/469 (47%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +S + QL+ + ++ M G + N L+ +GI Sbjct: 257 ITFGFS------QESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ Y I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] Length = 470 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + +G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNIIGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468 >gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS] gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS5005] gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS] gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS5005] Length = 463 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 214/471 (45%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G+ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + D ++ + + V G + A N ++ + Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL G R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + G++IAVL DM E+G+ S H L + L+ NI + G H+ L + Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + VHY + + + ++Q+ L D +++K S+S +L++ L+ Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453 >gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] Length = 490 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 146/476 (30%), Positives = 237/476 (49%), Gaps = 22/476 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-KG 64 T D+++A G + + SIDSRS + F I G D H FI A++ G Sbjct: 28 TIKDIVEACSGQLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKING 87 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + G + P V D + A+ K+ R R ++A+TGSVGKTTT+E Sbjct: 88 ATF--TSEHDEPLEGFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTRE 145 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M++ L+S KK + IG+ N+ IGVPLTL+ + + + + E+GMS G+I LT+++RP Sbjct: 146 MISTVLASQKKVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERGQIEKLTNMIRP 205 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++AV+T I +H++ E I K +I +GL + G +FLN DD F + K Sbjct: 206 NVAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLAPYRGKL----S 261 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMAQNMLMTL 300 + +G K D++ Q+ + K MEVV +G H +N L+ L Sbjct: 262 HKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDMEVVLGTMGEHNVRNALVAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + D+ A KAL FH + + + TLID++YNA+P SMKA++SVL Sbjct: 322 GVAHQMGLDMKAAAKALVTFHGQRQQMHTLK------SCTLIDDTYNASPDSMKASVSVL 375 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + +GRRIA L DM E+GE + +H ++ + ++ + V G + + Sbjct: 376 SSMEG-VKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEVAAYGELSEEILKGVED 434 Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL-LLEEFPAIQ 472 + V + E+ D L ++ + + DV+++K+SN + L E ++ Sbjct: 435 NNERIVVKHFESRDALKDYLLTYVHPDDVLLLKASNGMKLKEIAEAFLQNEKKVLK 490 >gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 466 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 135/458 (29%), Positives = 228/458 (49%), Gaps = 14/458 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL++ + G + P NG+SIDSR+I E +FA++G YDGHDFI A+ KGA Sbjct: 6 LKDLMRVVGGKFVKGNPGFSANGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAINKGAA 65 Query: 67 LVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTK 123 VV + D + + S+ + +D L +L + A + R + K I ITGS GKTTTK Sbjct: 66 AVVCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNGKTTTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L + +T + G++NN IG+PL++ + D+++ +FE+G S GEI+ L+ ++ Sbjct: 126 EILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLRGEIKILSDILN 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +IT + +HL F + + K +F+ +++TG I +N DD F + Sbjct: 186 PDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEFLMT----APQYV 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + I +F AD + K S + E+ +G S+++ G N L + Sbjct: 242 SRKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALAAVACA 301 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +D + F P R + LI+++YNANP+SMK AI + + Sbjct: 302 IGFGFSLDEIKCGIENFMPP---KMRMETLVTGTDVVLINDAYNANPSSMKKAIQAV--L 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + + VLGDM E+G+ S +H +L + ++ +++S V L G K+AL + + Sbjct: 357 QSYSGKKINLVLGDMLELGDKSADYHSELGKFINAHDVSSVHLLGEMSFYTKEAL-NTKN 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRL 460 V +S D L ++ + D V + K+S ++ Sbjct: 416 VFHSRNSDSLLTQLKQIPAEDDCVFLFKASRGMKLEKI 453 >gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Legionella longbeachae D-4968] gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella longbeachae NSW150] gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Legionella longbeachae D-4968] gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella longbeachae NSW150] Length = 441 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 130/443 (29%), Positives = 203/443 (45%), Gaps = 19/443 (4%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GI IDSR + F AI+G +DGHDFI A +GA VV+ + I Sbjct: 17 STELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVEGVH----I 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P F V D + AL K+A A R +IA+TGS GKTTTKEM+ L S +++ G+ Sbjct: 73 PQFVVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAILPS--PSHSTKGNL 130 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG PL++ ++ + +FELG +H GEI +V P + +I IAPAH+ F I Sbjct: 131 NNHIGAPLSVFQLNSQHRYAVFELGANHPGEIAHTVAIVHPDVTLINNIAPAHVEGFGSI 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + +A AK EI +GL GT +N DD++ + F AD + Sbjct: 191 DGVARAKGEIHQGLSSAGTAIVNDDDAYAHFWDELLLDKKVLR---FSIEHPADVYAQDV 247 Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S+ + ++ G H +N L + + L++F Sbjct: 248 QLDSQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGLSAKEIQQGLNLFSG 307 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + T+ID++YNAN S+ A+ VL++ G++I V GDM E+G Sbjct: 308 VKGRLT---VLTGKNQSTVIDDTYNANLRSVLVALEVLAEHP----GKKIFVFGDMGELG 360 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + H ++ I + G +A + Y + + L + + L Sbjct: 361 VWATQHHQEVGIAARRLGIDQLLCCGSKSRLAAEAF--GVGGEYFTSQEQLVQNLVAKLS 418 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 VV+VK S S ++++ L+ Sbjct: 419 ADTVVLVKGSRSSAMEKIVHQLV 441 >gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 457 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYT 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes FSL R2-561] Length = 470 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468 >gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes Finland 1988] Length = 466 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 13 TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 72 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 73 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 130 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 131 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 190 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 191 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 245 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 246 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 304 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 305 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 362 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 420 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 421 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 464 >gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes str. Manfredo] gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 463 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 214/471 (45%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G+ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + D ++ + + V G + A N ++ + Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL G R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + G++IAVL DM E+G+ S H L + L+ NI + G H+ L + Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYS 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + VHY + + + ++Q+ L D +++K S+S +L++ L+ Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453 >gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] Length = 456 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 211/471 (44%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +++ + ++ S+ +N I DSR I + F +KG DGHDFI A + Sbjct: 3 LSLYEVAKVVEAQNSLSEFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V D L A LA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKEIPGK------PYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + + Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIAV+T I AHL F E+IA K +I +G++ G + D L + Sbjct: 176 PHIAVVTLIGEAHLEFFGSREKIAEGKMQIIDGMDSHGILIAPGDPIIDPYLPENQMLIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++ ++ + + G + A N ++ + Sbjct: 236 ----------FGDNQEIYVKDIQERKNSLTFTTNVLDRAITLPLSGKYNASNAMIAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + D I+AL + R + + A ++ + YNANP +M+ + S + Sbjct: 286 KLLAVEDDDIIEALENIQLTKNRTEWKKAANGAD---ILSDVYNANPTAMRLILESFSSL 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 +P +G++IAVL DM E+G S H + LS I H+ G + +L + Sbjct: 343 TPENQGKKIAVLADMKELGPKSVELHQQIITALSPDKIDHLVFYGNDIESLAQLASQMYP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V++ + D + ++ L D +++K SNS +L+ L+ Sbjct: 403 IGKVYFFKKTEDQDQFDAMANHVKEILEANDYLLLKGSNSMHLDQLVEQLV 453 >gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acidiphilium cryptum JF-5] gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium cryptum JF-5] Length = 451 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 174/467 (37%), Positives = 244/467 (52%), Gaps = 17/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ DL A G + G+SIDSR+IAP E F A+ DGHDF+ A Sbjct: 1 MSGLWSARDLAVATNGTWLRGEADA--TGVSIDSRTIAPGELFVALADAR-DGHDFVPDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA V+V D+ A P V+DV AL +L R RS+A ++A+TGSVGK+ Sbjct: 58 EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS+ T+A S+NNHIGVPLTLAR+P + DF + E+GM+H GEI L+ Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+ VIT I AHL +E IA KAE+ G+ G L F L + Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLP-RGPFLSRLARR-- 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + SFG A+ +L + + ++ + + + G HMA N + L Sbjct: 229 ARDGVRVVSFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D A AL F P GRG R R ++ TL+DESYNA+ S++AA+ VL Sbjct: 289 AAAAALGLDPAQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + GRRIAVLGDM E+G+ + H DLA+ V+ G H+ + D LP Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLAD-AVSGVADLVFACGPHMRVMFDELPE 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L ++++L GDVV+VK S ++ + ++ Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGSYGSRMRDVVAAIEDK 450 >gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 464 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 169/467 (36%), Positives = 247/467 (52%), Gaps = 13/467 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT + A +G G+SID+R++ P + F A+K DGHDF+ A Sbjct: 1 MT-LWTATEAAGATKGR---STTDWQATGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V+ + P+ VDDV L L AAR R+ A ++ +TGSVGKT Sbjct: 56 LEKGAGAALVSR--IPEGVPEDAPLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L + KT+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L H Sbjct: 114 STKEMLASILETRGKTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAH 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPH+ ++TT+A HL F + IA+ KA +F+GL GT +N D +L++++ Sbjct: 174 QARPHVGLVTTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQ 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G K + D+ L +Q ++ + ++ + G H A N L L Sbjct: 234 ARGAKIVEF--GRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISV 359 L D+D AI L + P +GRG R A N L+D+SYNANP SM + Sbjct: 292 AACVELGVDLDQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSM---EAA 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L ++ RRIA LGDM E+G Q+ H +A+V ++ + V G + AL ALP Sbjct: 349 LDVLAASAGQRRIAFLGDMKELGAQEQAMHAAIADVAAMAQVDQVHCIGPLMRALHQALP 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ET G+ L + + DGD V+ K S S ++++ L + Sbjct: 409 EGKRGLWAETSAGMALHLPELIRDGDAVLAKGSLSMALAQIVDGLRK 455 >gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella denitrificans OS217] gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella denitrificans OS217] Length = 457 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 141/470 (30%), Positives = 213/470 (45%), Gaps = 19/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q + +G + +S DSR+I F A+KG +D HDF A Sbjct: 1 MIEL-TLDALAQKLNAKHLG--ENLTIANVSTDSRAIPAACLFVALKGERFDAHDFAATA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA ++V ++ L IP V + A+ ++ R +A+TGS GKT Sbjct: 58 IENGAKALLVERELA-----LDIPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEML LS + G++NN IGVPLTL R+ ++G+FELG +H GEI + + Sbjct: 113 SVKEMLASILSQGHQVLYTAGNFNNEIGVPLTLLRLSQADEYGVFELGANHKGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP +A++ I AHL F IE IA AK+EIF L G +N DD+F EL+K K+ Sbjct: 173 LVRPRVALVNNIGSAHLEGFGSIEGIAEAKSEIFNHLSADGVAVINADDAFCELMKTKAK 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + + + QG+ + V G H N L Sbjct: 233 AFKQLSFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAVQLPLAGIHQVSNALAAS 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L + + L+ P +GR + + G +ID+SYNANP+S+ AAI L Sbjct: 293 AMCLALGISLTDIVSGLARLAPVKGRMQPH----TLGRLLVIDDSYNANPSSVSAAIDWL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +G VLGD+ E+G+ + H + + I ++ G A Sbjct: 349 K----NRDGFCCLVLGDLGELGDNAAHLHAQVGQQAKEAQIDALFCCGSLSENTSLAFGS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEFP 469 + + L I+ G V V+VK S S R++ LL + Sbjct: 405 PHYAELPALLVELTSAIK--ANRGAVTVLVKGSRSARMERVVENLLNAYE 452 >gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] Length = 452 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 129/461 (27%), Positives = 205/461 (44%), Gaps = 18/461 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ AI +G V+ +S D+R++ P F A++G +DGHD+I A++ G Sbjct: 1 MTLKEIAAAIGAD---GTFEGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGG 57 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V + G PV V + AL LA A R R + ITGSVGKTTTK+ Sbjct: 58 AACAVAHERRDYGAG----PVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKD 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ A+S+ +T G+ NN IG+P TL + + + E+GM GEI L + RP Sbjct: 114 MIAAAVSAGFQTLKTEGNLNNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADVARP 173 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT I +H+ E I AK E+ + L +FL DD L K + Sbjct: 174 TLGVITNIGVSHIEQLGSRENIMKAKLELADALPDGAPLFLCGDDD----LLKKVSIPRL 229 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + ++ ++ Q+ +Q G + IG H +N + G+ Sbjct: 230 DVRFYGVENPACALHAADIREADAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVGM 289 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + AL+ + P + ++ G T++++ YNA+P SM+AA++ LS + Sbjct: 290 ALGIPAEKCAAALAAYVPS----GMRQRVVHWGSVTVVEDCYNASPDSMRAALTTLSAMR 345 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423 GRRIAVLG M E+G SQ+ H ++ + + + G + Sbjct: 346 --CAGRRIAVLGGMLELGAYSQAAHREVGRAAAGAGVDLLLAYGGDACYYSQGAKEGGVE 403 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L ++ +L GD+V VK S ++ L Sbjct: 404 SETFSDKADLLARLRGALGPGDIVWVKGSRGMRMEEVLQGL 444 >gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella loihica PV-4] gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella loihica PV-4] Length = 456 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 222/472 (47%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL +L + + IG V+ +S DSR + Q F A+KG +D HDF A Sbjct: 1 MIPLK-LSELAKVLNAKHIGD--DLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ ++ P V + A+ ++ + +A+TGS GKT Sbjct: 58 VMDGASALLVEREL-----PIAAPQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS+ + G++NN +GVPLTL R+ ++G+FELG +HLGEI + + Sbjct: 113 SVKEMVATILSTQHQVLYTAGNFNNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F +E +A AK+EIF L K G +N DD+F ++++ + Sbjct: 173 LVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAFADVMRRAAA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + S G + + + V G H N L Sbjct: 233 SHTQLSFSSQGNPADVSADELSADA-LGCYRFRIAYLDEQRTVSLPLSGRHQVSNALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I L +D ++ L P +GR + R G F LID++YNANPAS+ AAI L Sbjct: 292 SICLALGLSLDEIVQGLMRLQPVKGRMQPTR----LGRFLLIDDTYNANPASVGAAIDWL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +I EG R VLGD+ E+G+ + H L E I ++ G A +A Sbjct: 348 QEI----EGNRCLVLGDLGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRASSEAFA- 402 Query: 421 SIHVHYSETMDGLFLFIQ---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + +D L + + + L V+VK S S R++ L+ F Sbjct: 403 ---GKHFTDLDALVVDLVSYFNQLTGKVTVLVKGSRSARMERVVEALIAAFE 451 >gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-175] Length = 457 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + ++ Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455 >gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 470 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468 >gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] Length = 457 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 153/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S S H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] Length = 457 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 204/472 (43%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ +A +G G + V G+ IDSR + F AI G + + H FI Sbjct: 1 MKNL-TLENITKACKGVYHGDESKLGREVGGVVIDSRKVQKDYLFVAIDGENVNAHQFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++KGA V+ + D +G V+ AL +A R ++ ITGSVG Sbjct: 60 DTIEKGALCVISHED----LGDTDFSYILVESTGQALLDIAKLYRDSFDVKVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM+ ++ K + IG++NN G+PLT+ + D I E+G++H GE+R L Sbjct: 116 KTSTKEMIASVVAQKYKVHKTIGNFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P I VIT I AHL F E I K+++ + ++ GTI N DD L ++ Sbjct: 176 SSVASPDICVITNIGVAHLEFFKTREGILQEKSKMIQDMKDGGTIIFNGDDD----LLSQ 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + T FG N F + + + L + + + Sbjct: 232 AGPIKGATPILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEYSFECVVPLPGTHMISNA 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V IKA P + ++D+ YNANP SMKAAI Sbjct: 292 LAGAAVGYTLHLTSEEIKAGIEGLP---SIPGRNNIIKTDRLIILDDCYNANPVSMKAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL GR++AVLG+M E+G + H ++ E + + I V G L D Sbjct: 349 DVLDMAI----GRKVAVLGNMGELGNNEKVLHREVGEYAAAHGIDLVCGIGHLAKELVDG 404 Query: 418 L---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S + E ++ + DGD V+VK+S+ ++ L Sbjct: 405 ATNGSSSTRGLWFENKADFLDAMKDLIKDGDNVLVKASHGMDLTTIVEALKN 456 >gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. m3-13] Length = 453 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 132/465 (28%), Positives = 215/465 (46%), Gaps = 21/465 (4%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QK 63 T + + QG I V G+S D+R + + I G +++GH F+ A+ +K Sbjct: 5 TLKQIQEMAQGQPISSEYSAIVVEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKK 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA D + + VDD + AL LA + R + ++ ITGS GKTTTK Sbjct: 65 GAVASFWQKDQPE--PPTDLNLIVVDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+T L + + + G+YNNHIG+PLT+ M D + + E+GMS GEI L+ + + Sbjct: 123 DMVTSVLETTFRVHKTAGNYNNHIGLPLTILSMKEDTEVAVLEMGMSGRGEIELLSSIAK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AVIT I +H+ + E IA AK EI GL++ G + +N D+ G Sbjct: 183 PDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGKLIINGDEPLLT-----DRVGG 237 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG N D+Q + + +E + I A N+ L + Sbjct: 238 KTNVIPFGLKANNDYQAKDIMLKGIGT-------HFIIEETEYFIPVLGAHNVTNALAAI 290 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + G R G +T+I+++YNA+P SM+AA+ +L + Sbjct: 291 IVGELFGVSEENRKKGLEQLVITGMRNEVVETSGGWTVINDAYNASPTSMRAALDLLGSL 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420 G G++IAVLGDM E+G++ ++FH ++ + + N+ +V+ G + + Sbjct: 351 --DGYGKKIAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVFTFGALGMEIAKGAQEVME 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HV L ++ L +GDVV+VK S +I + Sbjct: 409 PSHVKPFMNKQELTRELRPLLENGDVVMVKGSRGMKLEEVIEGIK 453 >gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] Length = 472 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 182/456 (39%), Positives = 252/456 (55%), Gaps = 16/456 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A G +G G+SIDSRS+ P + F A+ G DGH+F++ Sbjct: 14 PLWTADEIAAATGGQVLG---DFEATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTAD 69 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121 +GA +++ + IP V+D AL +L VAAR R + A+TGSVGKT+ Sbjct: 70 RGAAGALISKPVA-------IPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTS 122 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + L K +A + SYNNHIGVPLTLARMP D +FE+GM+H GEI L+ Sbjct: 123 VTRAVEAGLRRAGKAHASVKSYNNHIGVPLTLARMPRDTQRAVFEVGMNHSGEITPLSGF 182 Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +RPH ITT+ P HL NF G E +A AKAEIF G+E G LN D+ +F LLKA++ Sbjct: 183 IRPHAVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAE 242 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + SFG + QL ++ + + L+G ++ G H N L L Sbjct: 243 KAGAEVW-SFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVL 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L D +TA+ AL+ F P EGRG + G FTL+DESYNANP SM+AA+ L Sbjct: 302 LMLEALDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTL 361 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRRI VL DM E+G LS FH DLA ++ +I V+ +G + +L +ALP Sbjct: 362 G--AREVAGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFCAGPLMKSLWEALPP 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + Y+E+ L + S++ GDVV+VK SN Sbjct: 420 TRRGGYAESAAELAPQVVSAIRAGDVVMVKGSNGSR 455 >gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6] Length = 457 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 454 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + +I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P VDD L A LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSEREVA------GHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI V+T I AHL F E+IA K +I +G++ G + D L + Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPESQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + G + A N ++ + Sbjct: 236 ----------FGDGAEIFVKDLQESKESLTFTTNVIDRPITLPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D ++AL R + + A ++ + YNANP +M+ + S+I Sbjct: 286 KLLAISDDDIVEALETIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + LS + + G + L + Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + D + +Q L D +++K SNS +++ L E Sbjct: 403 IGKVYYFKKTADEDQFDAMLETVQKVLQPADQILLKGSNSMQLAKVVEALEE 454 >gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] Length = 457 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 224/469 (47%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +S + QL+ + ++ M G + N L+ +GI Sbjct: 240 ITFGFS------QESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] Length = 463 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 213/471 (45%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELP------GTPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G+ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + D ++ + + V G + A N ++ + Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL G R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + G++IAVL DM E+G+ S H L + L+ NI + G H+ L + Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + VHY + + + ++Q+ L D +++K S+S +L+ L+ Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVERLV 453 >gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. [Bacillus cereus E33L] gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus E33L] Length = 454 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 210/467 (44%), Gaps = 21/467 (4%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58 M + L + I G ++G+ IDS+++ F I DGH+++ Sbjct: 1 MIQM-NLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHEYVK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA + IP+ VDD L AL +LA R +I ITGS G Sbjct: 58 EAMDNGAISSLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT K+++ L S + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L Sbjct: 116 KTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P +AVIT I +HL +EIA AK EI +GL + G N D+ L ++ Sbjct: 176 SRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LFSR 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ +FG+ D + ++ +V HG + + Sbjct: 232 NNKTSGVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGI 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + K R++ + FT+I++++NA+P+SMKAAI Sbjct: 292 AV-----GQFYKVPTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIE 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +++ + + I V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEA 404 Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + V + + + + DVV++K S ++ Sbjct: 405 SKKYDTGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451 >gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 10403S] Length = 457 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455 >gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0043] gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF] Length = 474 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 224/469 (47%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +S + QL+ + ++ M G + N L+ +GI Sbjct: 257 ITFGFS------QESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 454 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + +I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P VDD L A LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSEREVA------GHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI V+T I AHL F E+IA K +I +G++ G + D L + Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPESQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + G + A N ++ + Sbjct: 236 ----------FGDGAEIFVKDLQESKESLTFMTNVIDRPITLPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D ++AL R + + A ++ + YNANP +M+ + S+I Sbjct: 286 KLLAISDDDIVEALETIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + LS + + G + L + Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + D + +Q L D +++K SNS +++ L E Sbjct: 403 IGKVYYFKKTADEDQFDAMLETVQKVLQPADQILLKGSNSMQLAKVVEALEE 454 >gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes L99] Length = 470 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + + + + ++VK S G ++ L+ Sbjct: 425 GKVHHFDTKESLETALLAEIKGNEWILVKGSYGMGLKDVVENLI 468 >gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces flavogriseus ATCC 33331] Length = 472 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 128/476 (26%), Positives = 198/476 (41%), Gaps = 23/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + V G + IDSR + F A G DGHD+ Sbjct: 1 MIAL-SLAEIAGIVGGQPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV+ GA V+ + +P VDDV+ AL LA AA R T++A+TGS G Sbjct: 60 RAVEAGAVAVLAARP-------VGVPAIVVDDVVAALGALARAAVERLGTTVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT R + + E+G +G I +L Sbjct: 113 KTSTKDLIAQILERKAPTVWTPGSLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L P I ++ + AH+ F E IA AK E+ E L + G LN DD + ++ Sbjct: 173 AGLTPPRIGLVLNVGSAHIGEFGSREAIAQAKGELVEVLPEDGAAVLNADDPLVRAMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ +AD + + + V + Sbjct: 233 TKA----RVILFGEAPDADVRGENVRLTDDGRPAFALHTPTGCSDVTLRLY-GEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SMKAA+ Sbjct: 288 LAAAAVAHELGMSVTEIADALSGAGTLSRWRMEVTERPDGVTVVNDAYNANPESMKAALR 347 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L+ + GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGQEASWL 407 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G ++ LLE Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVALALLE 463 >gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 463 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 214/471 (45%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELSGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G+ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + D ++ + + V G + A N ++ + Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL G R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + G++IAVL DM E+G+ S H L + L+ NI + G H+ L + Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + VHY + + + ++Q+ L D +++K S+S +L++ L+ Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453 >gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] Length = 474 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYT 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] Length = 478 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 162/476 (34%), Positives = 244/476 (51%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G +IG +G+SID+R++AP + F A+K DGHDF+ A Sbjct: 1 MS-LWTAKEAESATGGRAIG---DWSCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V V + + P+ V+DVL AL L AAR R++A ++A+TGSVGKT Sbjct: 56 LEKGAGAALVTH--VPEGVAENAPLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML + + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L Sbjct: 114 STKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQ 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A++TT+A HL F+ + EIA KA +F+GL+ G +N D +L AK+ Sbjct: 174 MAKPDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAV 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ + ++L + + + + G + G H A N L L Sbjct: 234 DRRLREVEF--GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKE----GRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + AD+ A +L + P + LID+SYNANP SM AA Sbjct: 292 ASAQAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAA 351 Query: 357 ISV------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + V I +GRRIA LGDM E+G + H LA + + + + G Sbjct: 352 LEVLAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +L D LP ++ET L + S L GDVV+ K S S +++ + + Sbjct: 412 MKSLYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLSMKLGLIVDAIRK 467 >gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] Length = 453 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 202/467 (43%), Gaps = 19/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L DL Q + I IV + GI+IDSR + + F G + DGH++I A Sbjct: 1 MKYL--VKDLEQILNAKKINIVENKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA + + S + + V+D A+ LA A IIAITGS GKT Sbjct: 59 FEKGAAASLSLKEDFTSDNN----IIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+++T L + K + G++NN +GVP+T+ P D + + E+G G++ FL+ Sbjct: 115 TTKDIITGLLETKFKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADGFGQLDFLSK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P VIT I +H+ F E IA AK EI G++K G N D+ + L KS+ Sbjct: 175 LVEPDYTVITNIGESHIEFFGSREGIAKAKFEITNGMKKDGFFVYNGDEVLLKDLVDKSN 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S G++ + L + + ++ L + + Sbjct: 235 IGAT----SCGENDYNNIILENYTITRDHIDFKLNLSDEKFTTKL----KGKHNLFNIMF 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ E R +I+++YNA+P SMKA++ V+ Sbjct: 287 ATAIAEKLGLSIDEIRKAIEKTSEITHMRLESIPYGKDSLIINDAYNASPTSMKASVDVV 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDAL 418 S + VLG M E+G +H ++ E + + +I V G + D + Sbjct: 347 SGFDDFD--YKTLVLGSMFELGSKEVQYHSEVGEYISNNSKDIDLVISVGDLAKNITDNI 404 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I + + + + +++ + +V++ K+S S +I + Sbjct: 405 TNSEIKKLHFSSNEEVSNYLKENKHANEVILFKASRSMKLESIIEEI 451 >gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] Length = 470 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + +L DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 366 SSGK-PKYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468 >gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 500 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 192/498 (38%), Gaps = 46/498 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + ++ + G P V G + D+R + F A+ G DGHDF Sbjct: 1 MIVL-SLAEIADVVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----------------- 102 AV+ GA V+ + + P V L A + Sbjct: 60 AVEAGAVAVLAARE-------VDAPAIVVP-PLAAGEAHERSVALTGDKDGSGAAVLAAL 111 Query: 103 ----------RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 + T++ +TGS GKT+TK+++ L + T A GS+NN +G P T Sbjct: 112 AKLARYVVQRLAEGELTVVGVTGSSGKTSTKDVIAQLLEPLGPTIAPPGSFNNELGHPWT 171 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 R + + EL G I L + P I V+ + AH+ F E IA K E Sbjct: 172 ALRAGAETRHLVLELSARGPGHIAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKGE 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E L + G LN DD + +++ A + S A+ + ++ Sbjct: 232 LVEALPEDGVAVLNLDDPLVAAMASRTKARVVFVGESPSAQVRAENITLDDEA---RASF 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + V G H N L + L A + A + + +R Sbjct: 289 RLITPAGEAGVKLPLHGEHHVGNALSAAAVALELGATPEEI--ATRLSALERRSARRMEV 346 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 T++++S+NANP SM+A + L+ ++ R AVLG M E+G S + H ++ Sbjct: 347 VTRPDGVTILNDSFNANPESMRAGLKALAAMTRETGRRSWAVLGVMGELGADSVTAHDEI 406 Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 ++ NI+ + + G A+ ++ + L GDVV+ Sbjct: 407 GRLVVRLNIAKLVVIGPEAAAMHQGAHQEGSWGEESTLVPDVEAAAALLHDQLRPGDVVL 466 Query: 449 VKSSNSCGFYRLINLLLE 466 VK+S + G +R+ LLE Sbjct: 467 VKASKAAGLWRVAEALLE 484 >gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes 220] Length = 457 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455 >gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] Length = 465 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 214/466 (45%), Gaps = 15/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + + +G G +N + DSR F A+KG ++DGH F+ A Sbjct: 1 MIPL-SLTTIAEVAKGTLQG--SDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA ++V + ++P V D AL +A R + +I ITGS GKT Sbjct: 58 KLQGAKALLVEH-----LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L A G++NNHIGVPLTL R+ + + E+G +H+GEI + Sbjct: 113 TVKEMVASILRQKGNLLATQGNFNNHIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCAS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P ++VI + AH+ F +E +A AK+EI++ L + GT +N D +F + + Sbjct: 173 LAKPDVSVINNVEAAHIEGFGSVEGVAKAKSEIYQALSEEGTAVINLDSNFADQWIEQFA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L T+ + + + M+ G S + M + Sbjct: 233 GLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSNALV 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 A D I + + +G+ + G +ID++YNA+ AS+KAAI L Sbjct: 293 AAALASAAGADMEIIKVGLETMVSVKGRLNQFKAANG-ALIIDDTYNASVASVKAAIDYL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +S G ++ VLGDM E+G+ S+ +H ++ E NIS + +SG V +A Sbjct: 352 TSLS----GTKVLVLGDMAELGDESEQYHREVGEYAKENNISQLLVSGHWVKYSTEAF-- 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E + L + S + ++VK S S ++++ L+ Sbjct: 406 GDKAQWFENKELLVSHLNSVIQSDYKILVKGSRSAQMEQVVDALVA 451 >gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] Length = 470 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ + PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468 >gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis 62] Length = 457 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVD--VPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis] gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] Length = 472 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 201/472 (42%), Positives = 277/472 (58%), Gaps = 3/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW LL A+ G +IG +P+ G+SIDSR++ + FF IK DGHDF A Sbjct: 1 MTVLWDQKILLSAMDGVAIGCLPE-SFPGVSIDSRTLVKGDIFFCIK-NRLDGHDFAAQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GAG +V+ + + + LS P+ V DVL AL +LA AR RSKA IIA+TGSVGKT Sbjct: 59 LARGAGALVIAQNRLDDMKQLSAPLIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE L L ++ K +A I S+NN GVPLTLA+MP+D D+GIFE+GM+H EIR L Sbjct: 119 TTKEALKKVLQTVGKVHANIASFNNCWGVPLTLAQMPLDSDYGIFEIGMNHKDEIRSLVK 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV PH+A+IT IA H+ F +EEIA AKAEIFEGL+ G LN D FF L K+ Sbjct: 179 LVCPHVALITHIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAE 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +K I SFG+S AD+Q ++ S M V+ G+ + + G H+ N L + Sbjct: 239 QCNVKKILSFGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVI 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359 + AD+ ALS F +GRG RYR +L G + + SYNANP SM+AA+++ Sbjct: 299 AACDAVGADLSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNL 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 LS GRRIAVLGDM E+G S+ FH L + + + V+L G + L L Sbjct: 359 LSIGPVGACGRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFLFGKEMKFLAVDLS 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + VHY+E ++ + I + + GD+++VKSS+S ++ L+ + I Sbjct: 419 SYVEVHYAEHVEEILPLIFTEISKGDLIIVKSSHSTHSSHIVAAFLDRYKVI 470 >gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] Length = 465 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 125/476 (26%), Positives = 204/476 (42%), Gaps = 25/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ + G G V I+ DSR ++ F AIKG DGH FI Sbjct: 1 MKNL-TLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + GA + + V V L A+ +A + A ++ I GSVG Sbjct: 60 GSFADGALAALAE----VAPAETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM+ L+ +T G++NN +GVPLT RM + + G+ E+G++H GE+ L Sbjct: 116 KTSTKEMVAAVLAQKYRTLKTEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGEMHRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP V T + AHL + I AK+E+F+ +++ G + +N DD + Sbjct: 176 AKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDEKGHVIVNGDDDKLSTISEV 235 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ + + E + + S EV+ G HM N Sbjct: 236 HGVAPVRFGIGEQGYSHPNDVWADGIVSHGLEGISCVIHTEAGSFEVMIPSSGRHMIYNA 295 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + ++ + + P GR + +T+ID+ YNANP SM Sbjct: 296 LAGTAVGLVYGLTLEQIRSGIESYMPLSGRF----HIIKGDSYTVIDDCYNANPGSM--- 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I GRR+A+LGDM E+GE +++H ++ + I + G A+ Sbjct: 349 -KASISILKEALGRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLICCVGALSEAMAK 407 Query: 417 AL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A V + T++ L L D ++VK+S++ GF R+++ L Sbjct: 408 AAVDYMETHPEAHCLVRHYPTVEALMDDCGEILEKNDTILVKASHAMGFGRIVSGL 463 >gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2141] gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0645] Length = 474 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 153/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S S H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 218/464 (46%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ + + + DSR I F + + DGH ++ A+ GA Sbjct: 5 LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D +I SI V V D L AL +L ++ ++AITGS GKTTTK+M Sbjct: 64 ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L++ + ++NN IGVP+T+ M + + + E+GM G++ FL+ L P + Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F + IA AK EI GL++ G + +N D+ L + Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +FG N D + + ++ +V ++ + IG + N L L + +I Sbjct: 239 VLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 VD KAL+ F R + ++ + YN+NP ++K + Q+ Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423 EG+RI VLGDM E+GE + H DLA+ ++ I V+L G + L + L Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIDSVYLCGELMGYLAEKLREKFDETQ 412 Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H+ + + L +++ L+ D+V++K+S+ +++ L+ Sbjct: 413 IHHYQKDDLLTLTSDLKNELMPDDIVLLKASHGIHLENVVSELI 456 >gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2137] Length = 474 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] Length = 454 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 138/462 (29%), Positives = 211/462 (45%), Gaps = 23/462 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ G+ I+ + + GIS DSR I P E F A++G +DGH+F AV+KGA Sbjct: 10 ISKILEISPGNFPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGAT 69 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++++ + + IP F V++ L A ++A R + + IIA+TGSVGKTTTKE++ Sbjct: 70 ALILDKKLSVLSTNE-IPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELI 128 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ K + IG+YNN IGVP TL + +G+ E+ M GEI LT + RP I Sbjct: 129 AAVLSTAGKVHKSIGNYNNEIGVPKTLLELDHTHHYGVIEMAMRAKGEISLLTEITRPTI 188 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT + AH+ E IA AK E+ + + LN+D+S + T Sbjct: 189 GVITNVGTAHIGRLGSQEAIAEAKCELLAQMSQDSIAILNHDNSLLLETASTFWQGKTIT 248 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 G S Q L+ + E G H A N L L + +L Sbjct: 249 YGLEGGD------------LSGQLINPQTLRVEGKEFPLPLPGRHNALNYLAALAVAKVL 296 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D + L+V P R ++DE+YNA SM ++ L + Sbjct: 297 DLDWTPLTEGLTVNLPSGRS----RRHQLPNNILILDETYNAGLESM---LAALQLLKET 349 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHV 424 R IAVLG M E+GE S FH + + + I H+ + + + Sbjct: 350 PGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAGA-DGVAT 408 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +T + ++Q + GD ++ K+SNS R++N L+ Sbjct: 409 SCFKTHQEVVNYLQGLIKSGDRILFKASNSVELNRVVNDLIN 450 >gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] Length = 457 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455 >gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4000] gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0017] gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0027] gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4244] gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0312] gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1302] gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1341] gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309B] gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309A] gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1467] Length = 474 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] Length = 455 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 207/464 (44%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L A+ +G +G+SIDSRS+ E F A+ GP +DGHD++ Sbjct: 1 MLKPMTLSQLTAALSARLVG--ADASFSGVSIDSRSVGAGELFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ ++ +P V D AL +L R ++AITGS GKT Sbjct: 59 QAKGAVAALVEREVA----NVDLPQLVVADSRLALGQLGALNRAGYDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + ELG S +GEIR+ Sbjct: 115 TVKEMLACILRTRGPVHATRGNLNNDLGAPLTLLEIAPQHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G E+I AK EI EGL + GT LN DD F + KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGTAILNLDDKAFAIWKARAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + + + + G S+ V + +G H N L Sbjct: 235 AHKVISFARSDARADFHATDIG-RDARGCPSFTLHGAGASVAVQLNVLGEHNVSNALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ P +GR + +ID+SYNANP SM AAI +L Sbjct: 294 AAAHAVGLSLSGIAAGLNAMQPVKGRTVAQ---IAPSGVRVIDDSYNANPTSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGTNMTHAVKAFGA 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L +++ +++K S S ++ L Sbjct: 406 NGR--HFATQAELIEAVRAETASNTTILIKGSRSAAMENVVAAL 447 >gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces lividans TK24] gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] Length = 471 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 124/473 (26%), Positives = 186/473 (39%), Gaps = 19/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G I V G + DSR P F A G DGHDF Sbjct: 1 MITL-SLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V+ GA V+ + + +P VDDV AL LA R T++A+TGS G Sbjct: 60 RVVEAGAVAVLGSRP-------VGVPAIVVDDVQAALGALARHVVRRLGTTLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN +G+PLT + F + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLPLTALTATDETKFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I + + AH+ F G E+IA AK E+ E L + + L Sbjct: 173 TELTPPKIGAVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEG-GAAILNADDPLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG+S AD + + L S Y Sbjct: 232 MASRTKAKVILFGESGEADVRAENVRLTDTGQ-PSFSLHTPSGASDVTMRLYGEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP S KAA+ Sbjct: 291 LAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESTKAALR 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414 L + R AVLG M E+G+ + + H + + N+S + G L Sbjct: 351 ALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREARWLQLG 408 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LLE Sbjct: 409 AYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVATALLE 461 >gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51] gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 468 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 117/473 (24%), Positives = 188/473 (39%), Gaps = 17/473 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T +++ A G + P V + DSR + F +KG D H F+ A Sbjct: 1 MTMEMTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + VD AL +A A R R ++ ITGS GKT Sbjct: 61 FASGAAAALTQEHTRMEAEEA---WIAVDSTQLALQHIAAAYRQRFSIPVVGITGSAGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM +ALS+ K G++N+ IG+PL + + + + + E+G+S GE+ L Sbjct: 118 TTKEMTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLAQ 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P AV+T + H+ E I K I + + +FLN DD L+ K+ Sbjct: 178 VAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT- 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G + DF+ E + G+ V + + Sbjct: 237 ---GYEAVFYGTAPWCDFRAEGITVQGETTAFRCLAPGRESVEVILPVLGMHHVLDALAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ A + + +ID+SYN++P + K+++SVL Sbjct: 294 LAVAERLGVPLDRAAAA---LGDYRPLAMRQQIYHVNEVAVIDDSYNSSPGAAKSSLSVL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418 + GRR+AVL DM E+GE S+ H ++ + + + G A+ + Sbjct: 351 AGFRA---GRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVGPEAKAVAEGARS 407 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 I + ++S L GD V+VK S ++ LL+ FPA Sbjct: 408 VRSGIDCRVFDHNRQAAAELKSFLSPGDAVLVKGSRGMHTDEIVRALLQ-FPA 459 >gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] Length = 459 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 213/470 (45%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +AI I V +S DSR + F ++G H DGH ++ A Sbjct: 3 MKLAEIAKAINAQNEIEQWKDIEVTSVSFDSRHLEKGALFVPLQGAH-DGHQYVETAFTN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +D + + PV V D L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAAATLWASDH--ELTNSDHPVLVVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ ++NN IGVP+TL M + + + E+GM G++ FL+ LV Sbjct: 120 DMIASILSTQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVS 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AH+ F + IA AK EI GL++ G + D+ L + A Sbjct: 180 PDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLFVYDGDEP----LLNERAANI 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ D +S + + +G + N L + + Sbjct: 236 TQQTTRFGRQLTDDLYATSVNA-GSRSIEFKVNEWPDEQFTIPMVGEYNVNNALAAMAVA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + AL+ E R ++ ++ + YN+NP + K + L+++ Sbjct: 295 KRLHISPNHIKTALAN---VELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAEM 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 GRRIAVLGDM E+GE + H LAE ++ I V+L G + L+ L Sbjct: 352 PVQ--GRRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAHLQAKLQEQGY 409 Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH + ++ +D L +++ L D+V++K+S+ +++ + + Sbjct: 410 PAAAIHYYQADQLDQLTAALEADLHPADMVLLKASHGLHLEQVLAAIKAQ 459 >gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 457 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + ++ Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGDAMKAFGDIAEAKIGQ 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455 >gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 471 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 129/476 (27%), Positives = 198/476 (41%), Gaps = 25/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G + I P V G + DSR P F A G DGHD+ Sbjct: 1 MIAL-SLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYAR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V+ GA V+ + + +P VDDV AL LA R AT++A+TGS G Sbjct: 60 AVVETGAVAVLGSRP-------VGVPAIVVDDVQRALGALARHVVERLGATLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L + T GS NN IG+PLT + F + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLRTKAPTVFTPGSLNNEIGLPLTALSATAETRFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDSFFELL 235 T L P I ++ + AH+ F G E+IA AK E+ E L LN DD + + + Sbjct: 173 TELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAM 232 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A++ A + FG+S AD + + V + Sbjct: 233 AARTTARVLL----FGESDEADVRAENVTLTAAGQPSFSLHTPSGCSDVTMRLY-GEHHV 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + A ++ R T+++++YNANP SMKA Sbjct: 288 SNALAAAAVAHELGMSAKEIATALSEAGSLSRWRMEVTERPDGVTIVNDAYNANPESMKA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 A+ L+ + R AVLG M E+G+ + + H + + N+ + G L Sbjct: 348 ALRALAAM--GRGRRTWAVLGRMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWL 405 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LLE Sbjct: 406 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 461 >gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] Length = 481 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 174/476 (36%), Positives = 256/476 (53%), Gaps = 18/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + +A G + G V+G+SID+R++A + F A+K DGHDF+ A Sbjct: 1 MSALWTAREAAEATGGTAQG---DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGAG +V+ + + P+ V+DVL AL L AAR RS+A ++A+TGSVGKT Sbjct: 57 LGKGAGAALVSH--IPEGVAADAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L+ +T+A SYNNH GVPLTLARMP D F + E+GM+H GEI L Sbjct: 115 STKEMLRTVLARQGRTHAAEASYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEIAPLAR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A++TT+A AHL F IE IA KA IFEGLE G +N D +L+ + Sbjct: 175 LARPHVAMVTTVAAAHLEAFENIEGIAREKAAIFEGLEPGGIAVVNADLDTTPILEEAAT 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G K++ D+ L + +++ + ++QG++ G H A N L L Sbjct: 235 RAGASIRRFGTKAR--DYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMNGLGAL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAA 356 V+ L D A L+++ P GRG R +++ ID+++NANP S++AA Sbjct: 293 AAVAALGGDAGRAAPDLALWQPPAGRGTREDVMMDEARQGWVLDLIDDAFNANPTSLEAA 352 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ +P GRRIA+LGDM E+G + H D+A + + V G Sbjct: 353 LEVLAAATPRDNVGRIARGRRIAILGDMLELGPNEIAVHTDIATWPLIAQLDTVHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ALPR+ +++ + + + + GDVV+VK S + L Sbjct: 413 MRHLWQALPRAQRGTWADMAEEMVAELPDLVDAGDVVLVKGSKGSRVSLVAESLRN 468 >gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] Length = 457 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 133/449 (29%), Positives = 205/449 (45%), Gaps = 23/449 (5%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I ++ ++GI+ DSR I P E F A++G ++DGHDF AV KGA ++V+ + Sbjct: 22 IDVIDDFLIDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAIALIVDHHISVKS 81 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + IP V D L A ++A R + +IAITGSVGKTTTKE+++ LS+ + Sbjct: 82 -TKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVHK 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +YNN IGVP TL + D+ + E+GM L EI L+ + RP I +IT + AH+ Sbjct: 141 TKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIG 200 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 E IA AK E+ + T N+D+S K + G Sbjct: 201 RLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLLVQTAKKVWKGETISYGLEGGD----- 255 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + L+ + M+ G H A N L + + L D + ++ +S Sbjct: 256 -------ITGELLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKCLKLDCNVLMQGIS 308 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R R G L+DE+YNA SMKAA+ +L +I +A+LG M Sbjct: 309 ----VNLPKGRSRRYQLSGDILLLDETYNAGLESMKAALELLKEIPGQR---HLAILGTM 361 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLF 436 E+GE S H ++ E I H+ + +A+ D + T + L Sbjct: 362 KELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADGAL-GMVTECLPTQEELIKR 420 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + GD ++ K+SNS G R++ Sbjct: 421 LTEIVQPGDRLLFKASNSVGLNRVVEAFR 449 >gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 185/464 (39%), Positives = 260/464 (56%), Gaps = 1/464 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT L+ +Q G VP GISID+R++ + FFAIKG + DGHD++ A K Sbjct: 15 LWTPLGLVTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAK 74 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV+ + + P++ V +VL AL +L AAR R +A ++A+TGSVGKT+TK Sbjct: 75 GAMAAVVDEAHADRLAAHG-PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTK 133 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L + L+ +A + SYNNH GVPLTLARMP D FGIFE+GM+H GEI L +VR Sbjct: 134 EALRLVLTQGGSVHASVASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGEITPLVGMVR 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITT+AP HL F +E IA AKAEIF GL G ++ D FE L + Sbjct: 194 PHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPGGVAIIHRDIPQFERLAEAARHSP 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I SFG + AD +L S+ S ++ +QG+++ G H A+N L L Sbjct: 254 AGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVLLAA 313 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ A L+ P+ GRG++ G F LIDESYNANPASM+AA+ + + Sbjct: 314 KACGVPLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMAGTL 373 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G GRRIA+LGDM E+G + H LA++L V+ +G + L DALP + Sbjct: 374 PLEGVGRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAGPLMRHLYDALPSGLR 433 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + L + +++ D+V+VK SN L+ L ++ Sbjct: 434 GEWRAKAEDLVPIVGATVQRNDIVLVKGSNGSRMKLLVESLKDK 477 >gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 440 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 191/461 (41%), Gaps = 24/461 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + VN I DSR I + F +KG Y GHDFI A Sbjct: 3 LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + VDD L A LA ++K +IA+TGS GKTTTK Sbjct: 62 GAIISFSEKEVEQA-------HLLVDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS KTY G++NN IG+P T+ MP D + + E+GM H G+I FL+ L + Sbjct: 115 DMIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQ 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT I AHL E IA K I G + D ++ Sbjct: 175 PELALITLIGEAHLEFMGSRENIAKGKMGITAG---LHGELIAPADPIINAFIPENQK-- 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + L K + + + + G + A N ++ + Sbjct: 230 ------ISRFGLPGEDLFITKLIEHKERLTFETNFLDESITIPVPGKYNATNAMLAAYVG 283 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 KAL E R ++ L+ + YNANP +M+ + I Sbjct: 284 LHYGLTEAEINKALKE---VELTRNRTEWKKSKNGADLLSDVYNANPTAMRLILETFQAI 340 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GR+IAVL DM E+G + H ++ + + I V+L G + L D + Sbjct: 341 PKNENGRKIAVLADMLELGPTAAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKP 399 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V Y +D L + + L D V+ K SN ++ L Sbjct: 400 VSYFTDLDLLTESLSADLKPADQVLFKGSNIMKLSEVVEKL 440 >gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1342] Length = 474 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 149/469 (31%), Positives = 224/469 (47%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ +LA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +S + QL+ + ++ M G + N L+ +GI Sbjct: 257 ITFGFS------QESQLQGIVINEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYV 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555] gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555] Length = 463 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 122/466 (26%), Positives = 209/466 (44%), Gaps = 14/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +F D+++A+ G I IS DSR + + F A+KG ++G++++ A +KG Sbjct: 4 MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKG 63 Query: 65 AGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +V+ S + V + AL +LA R + II +TGSVGKTTTK Sbjct: 64 ASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L K + G++NN IG+P L ++ + + E+GM+ GEI + R Sbjct: 124 DIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAAR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT + AH+ N + I +AK EI + K T+ +N D+ L+ K+ L Sbjct: 184 PDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNFTLN 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 G++ + ++ + + + + G + N L+ + Sbjct: 244 ---RVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCG 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D + + R + R FT+I++ YNANP SMKAAI VL + Sbjct: 301 RLLNMSYDEIREGVKNIKLTSMRMEIIRKKE----FTIINDCYNANPESMKAAIDVLKEF 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420 + + IAVLG M E+GE + H ++ +I + G + + + Sbjct: 357 KSNRK---IAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEYKKDFERGFKSTNK 413 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + L FI + GD ++VK+S +I L + Sbjct: 414 KGNFMGFDKYEDLKDFILKYIERGDTILVKASRFMKLEIIIETLKK 459 >gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL J1-023] Length = 470 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 210/464 (45%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V++ L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI GL +G + ++++ + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I ++L G + A K I Sbjct: 366 SKGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAETKIGQ 424 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVQHFDTKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 468 >gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] Length = 460 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 128/447 (28%), Positives = 203/447 (45%), Gaps = 13/447 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ DSR + P F A G +DGHDF A+++GA VVVN + + Sbjct: 22 DPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNHPVPGVPEEKA- 80 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 D A+ + R + ++ +TGSVGKTTTK+M ALS +T G+ Sbjct: 81 --ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALSGFGETIKTEGNQ 138 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+P TL R+ ++ + E+GMSH GEI L RP + +IT I +H+ N Sbjct: 139 NNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGSQ 198 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I AK EI GL + + LNYDD F KA A +S L Sbjct: 199 ENICKAKLEICNGLPEGAPLVLNYDDPFLR--KAALPAHVRPVWFSLSDENADVCALSIR 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ S++ + + V +G H N L + L D I+ LS F Sbjct: 257 QETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAKRVIRGLSNFE-- 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R + ++ T+I++ YNANP SM + L+ RR A+LGDM E+GE Sbjct: 315 --QTGRRQKVVDSEGVTVIEDCYNANPDSM---KAALAMFKDFPCKRRFALLGDMLELGE 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLV 442 LS+ H +L + + + + G A + + ++++ + S + Sbjct: 370 LSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGVETLHADSYREAADALLSRVQ 429 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469 GD ++VK+S+ +++++ EE Sbjct: 430 PGDAILVKASHGMALEKVLDIFYEEHK 456 >gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychromonas ingrahamii 37] gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychromonas ingrahamii 37] Length = 489 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 130/479 (27%), Positives = 207/479 (43%), Gaps = 23/479 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ +A G I P+ N IS D+R I + F A++G YD H F+ Sbjct: 14 MISL-TLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEK 72 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 AVQ+GAG ++++ +P V D AL LA R + AITGS G Sbjct: 73 AVQQGAGALLIDQK-----KRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNG 127 Query: 119 KTTTKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 KTTTKE+L+ L + G++NN IG+PLTL R+ + + ELG +HLGE Sbjct: 128 KTTTKELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVELGANHLGE 187 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I + L +P +A+I + PAHL F ++ +A AK EI+ L TG +N D F Sbjct: 188 IAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNLDSDFASE 247 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHM 292 + L + +S+ A S + S+ + + + + + Sbjct: 248 YLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAISIQLNLAG 307 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+ L ++ A + + R TLID++YNANPAS Sbjct: 308 LHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDTYNANPAS 367 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 +K AI +L Q + + VLGDM E+G+ S+ H + E + I + G Sbjct: 368 VKVAIDLLQQYASS----HLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQTLITFGKLTF 423 Query: 413 ALKDALPRSIHVH--YSETMDGLFLFIQSSL--VDGD-VVVVKSSNSCGFYRLINLLLE 466 A ++ + L ++++ L ++VK S ++N + + Sbjct: 424 KTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFIKQ 482 >gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 454 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 201/472 (42%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 H++ + + +I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LNLHEIAKVVGAKNTISDFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P VDD L A LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSEREVE------GHPYILVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI V+T I AHL F E+IA K +I +G++ G + D L + Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAKGKLQIVDGMDSDGILIAPVDSIVDPYLPESQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + G + A N ++ + Sbjct: 236 ----------FGDGAEIFVKDLQESKDSLTFTTNVIDRPITLPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D ++AL R + + A ++ + YNANP +M+ + S+I Sbjct: 286 KLLAISDDDIVEALENIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + LS + + G + L + Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + D + +Q+ L D +++K SNS +++ L Sbjct: 403 LGKVYYFKKTADEDQFDDMLKTVQTVLQPADQILLKGSNSMHLAKVVEALEN 454 >gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] Length = 474 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-003] Length = 457 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFDTKESLETALFSEIKGNEWILVKGSYGMGLKDVVENLI 455 >gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] Length = 457 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 189/469 (40%), Gaps = 17/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W + L G +G+S D+RSI + F A+ GP++DGHD++ A Sbjct: 1 MIGQWYLNQLKDQFGGLVTQ---DVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA VV+ S + + VDD AL +A A R R + + A+TGS GKT Sbjct: 58 FSKGAVAAVVSRSDSVSRKAA----WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML LS + A G+ NN IGVPLTL + + + E G S GEI + T Sbjct: 114 TVKEMLHAILSQNAEVLATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTD 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P +A++ AHL F ++ + +KAEIF L +TG + D Sbjct: 174 ISCPDVAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHT 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299 + +S AD + V + ++V +G H N L Sbjct: 234 EGLPRLTFSARGDLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMGQHNVANALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 VS + L F GR + + A +ID+SYNANP S+ + Sbjct: 294 ASAVSAQGMSLKDIASGLGSFSAVSGRMRPLKSARG---ALVIDDSYNANPGSV----NA 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-- 417 + G + VLGDM E+G + H + + W G A Sbjct: 347 AMDLLVSLPGESVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAYD 406 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ + L + G +++K S S R++ L E Sbjct: 407 AAAGKQGQHFKSHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTE 455 >gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 455 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 213/472 (45%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M++ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPNDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G++ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + + E+ + + V G + A N ++ + Sbjct: 233 ---VIRFGDHQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420 + + G++IAVL DM E+G S + H L + LS I + G + L Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV + + + + +Q L D +++K SNS G +L+N L+E Sbjct: 403 EGHVQFFQKNQQEDQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 463 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 213/471 (45%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELSGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F +IA K +I +G+ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + D ++ + + V G + A N ++ + Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL G R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + G++IAVL DM E+G+ S H L + L+ NI + G H+ L + Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + VHY + + + ++Q+ L D +++K S+S +L++ L+ Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453 >gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] Length = 459 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 213/469 (45%), Gaps = 16/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M T +++ + + G+ D+R I P + F G DGH+F+ Sbjct: 1 MILKKTVGEVVGMLDSTIHTDAFRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA ++ PV V+D L AL ++A K +IAITGS GK Sbjct: 61 AREMGAVATFWQKNV--PNPPTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGSNGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P IA+IT I AH+ EEIA AK EI GL +G + Y+++ Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLSPSGILIYPYEEALLLSHID-- 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G +FGKS+ A+ +E + + +E+ IG H N + T Sbjct: 237 ---GDFRQLTFGKSQEAEIYPLAIHAEAEGTAFVTNWE-PDLEIFVPIIGEHNVFNAMAT 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + + + KAL R + +++++YN++P ++K + Sbjct: 293 MLAAREIGIEGEKIQKALRNME---RSKSRLEWLTTKNGTRILNDAYNSSPTALKTVLKT 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + G+ + VL DM E+GELS+ H + AEVL + V+L G + A ++ Sbjct: 350 FMHMDSQGKR-KYLVLADMLELGELSEQLHKESAEVLEEGAVEKVFLYGEAMKAFEEVAK 408 Query: 420 RSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I V + +T + L + + + + ++VK S G ++ L+ Sbjct: 409 IKIGQRKVQHFDTKESLETALLNEMDGNEWILVKGSYGMGLKDVVENLI 457 >gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter cryohalolentis K5] gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 482 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 202/469 (43%), Gaps = 26/469 (5%) Query: 12 QAIQGHS------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 A+ GH G I+ D+R+I P + F A+ G ++DGHD++ A+ +GA Sbjct: 27 AALDGHWQLSEEQSGSKNDVMSTRIATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGA 86 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKE 124 +V + + + SIP V D AL +LA R + T+IAITGS GKTT KE Sbjct: 87 VAAIVARPIATADAN-SIPQLVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKE 145 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML + T G+ NN +GVP+ L + + I ELG +H+GEI + T +V+P Sbjct: 146 MLGSIFGRLAPTLITRGNLNNDLGVPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQP 205 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A I I AHL F E I KAEI+ L + + D F L+ + Sbjct: 206 DVACILNIGTAHLGEFGSREGICQTKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTS 265 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I D E+S ++ + + ++ G H N L Sbjct: 266 HVIGFGST----DVSASHLDVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAH 321 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +V + L P +GR G LID++YNANP S+ +++ Sbjct: 322 ALNIEVSDIVVGLENARPAKGRLNSQ----LLGMHRLIDDTYNANPHSV----RAAAKVL 373 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422 G ++ VLGD+ E+GE + S H L ++ I+ + G + + I Sbjct: 374 AAQTGTQVMVLGDIAELGEAAVSEHQSLGRTIATTGINVLLCVGEYAPYTVEGAQEISDI 433 Query: 423 HVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467 + + D L +++ L V+ K S S LIN L+EE Sbjct: 434 NAYAFTDKDSLLAYLKPYLQAQQAQPCTVLFKGSRSMEMETLINALVEE 482 >gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes J0161] Length = 457 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + +L DM E+G+LS H + AEVL I V+L G + A + I Sbjct: 353 SSGK-PKYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ +T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455 >gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] Length = 448 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 139/458 (30%), Positives = 209/458 (45%), Gaps = 19/458 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L +QG G G+S D+RS+ P F A+KG ++DGH F+ A +KGA Sbjct: 3 LAELTPVVQGRLQG--EDVVAQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGAS 60 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ S+P V D AL +LA R R + ++A+TGS GKTT KEM+ Sbjct: 61 AALLEQ-----TIEDSLPQVEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMI 115 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L A G+ NN IGVPLTL + F + E+G + EI +L+ LVRP + Sbjct: 116 ASVLGGAGSVLATQGNLNNDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRPQV 175 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT PAHL F ++ +A AK EIF+G+ G LN DD F + G Sbjct: 176 ALITNAGPAHLDGFGDLKGVARAKGEIFQGVNPGGVAVLNADDPHFSYWRD---LAGELP 232 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + FG +++A+ SE S + V G H N L + L Sbjct: 233 VIGFGLTQSAEVTAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVAIAL 292 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D D AL+ GR + R A L+D++YNANPAS+KAA+ +L++ Sbjct: 293 GLDRDQISAALAALPSIPGRLQIRRGAGG---MRLLDDTYNANPASLKAALELLAEFP-- 347 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 G R VLGD E+GE + H + + ++ ++ G +A + +H+ Sbjct: 348 --GERFLVLGDFAELGEEAAPLHRMMGKQARAAGVNRLYTLGHLSALAAEAFGQEA-LHF 404 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E L ++ ++VK S +++ L Sbjct: 405 FE-QQSLLAALREEQRPNVTMLVKGSRCMRMEQIVAAL 441 >gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 454 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 204/472 (43%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + +I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + P VDD L A +LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSERKVE------GHPYILVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI V+T I AHL F ++IA K +I +G++ G + D L + Sbjct: 176 PHIGVVTLIGEAHLEFFGSRDKIAKGKLQIVDGMDSDGILIAPADSIVDPYLPEGQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + + G + A N ++ + Sbjct: 236 ----------FGDGAEISVNDLQESKDSLTFTTNVINRPITLPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D ++AL R + + A ++ + YNANP +M+ + S+I Sbjct: 286 KLLAISDDDIVEALENIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + LS + + G + L + Sbjct: 343 PANSGGKKIAVLADMKELGEQSVELHKRMIMSLSPDVLDTLIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + D + +Q+ L D +++K SNS +++ L + Sbjct: 403 LGKVYYFKKTADEDQFDDMLKTVQTVLQPADQILLKGSNSMHLAKVVEALEK 454 >gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] Length = 462 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 179/456 (39%), Positives = 253/456 (55%), Gaps = 16/456 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LWT ++ QA+ G G G+SID+RS+ + F + G DGHDF+ AV Sbjct: 4 ALWTADEIAQAVGGQVAG---DFAATGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVA 59 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121 GA V+ + P V+D AL L VAAR R + A+TGSVGKT+ Sbjct: 60 NGAAGVLAAQP-------VDAPAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTS 112 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + L K +A + SYNNHIGVPLTLARMP D + +FE+GM+H EI L+ Sbjct: 113 VTRAVEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSF 172 Query: 182 VRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 V+PH ITT+ P H+ NF E +A AKAEIF GL G LN D+ +F+ LK ++ Sbjct: 173 VQPHAVAITTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAE 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G T++SFG+++ A +L + E++ + V L+G+++ G H N L L Sbjct: 233 KVGA-TVWSFGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L +TA+ AL+ F P EGRG + G FTL+DESYNANP SM+AA+ L Sbjct: 292 LMLEALDVPRETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRRI VL DM E+GE S FH +LAE ++ N+ V+L+G H+ +L +ALP Sbjct: 352 G--ARKVAGRRIVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSLWEALPP 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + Y+ + L + ++ GDVV+VK SN Sbjct: 410 TRRGGYAVVTEKLTAELAGAIRPGDVVMVKGSNGSR 445 >gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] Length = 454 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 137/458 (29%), Positives = 208/458 (45%), Gaps = 19/458 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L +QG GI +G+S D+RS+AP F ++G +DGH FI A +KGA Sbjct: 9 LAELASVVQGRLQGI--NIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGAS 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + +P V D AL +LA R R I+A+TGS GKTT KEM+ Sbjct: 67 AALLEQRINDP-----LPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L ++ A G+ NN IGVPLTL + F + E+G + GEI +L+ L RP + Sbjct: 122 ASILGWVEPILATRGNLNNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRPQV 181 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT PAHL F ++ +A AK EIF+G+ G LN DD F + G Sbjct: 182 ALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPHFSYWRD---LAGGLP 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + FG S++A+ R ++ S + +++ G H N L L Sbjct: 239 VMGFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAAIAL 298 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D +L+ GR + R L+D++YNANPAS++AA+ +L++ Sbjct: 299 GVDRQHLSASLAALPSIPGRLQIRRGIGG---MRLLDDTYNANPASLQAALELLAKFP-- 353 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 G R VLGD E+GE + H + + ++ ++ G A R + Sbjct: 354 --GERALVLGDFAELGEEAAPLHQAMGKQARAAGVNRLYTLGRLGAFAAKAFGRG--ASH 409 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L +Q L V+VK S +++ L Sbjct: 410 FLERQPLLAALQEELHPDITVLVKGSRCMYMEQIVAAL 447 >gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] Length = 457 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 223/468 (47%), Gaps = 24/468 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L A+ G +G + DSR+I P + F A++G +DGH ++L A+Q Sbjct: 1 MMRLSELAAAVGGELVG--EDVLFTSVGTDSRNIVPGQLFIALRGERFDGHAYVLQALQS 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G +VA V + AL +LA R R + AITGS GKTT K Sbjct: 59 G-----AAAALVAEAQPGMAAGVVVKNTRLALGQLAAVWRNRFSIPVAAITGSNGKTTVK 113 Query: 124 EMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 EM+ L + + G+ NN IG+PLTL R+ + + E+GM+H GEIR+L+ Sbjct: 114 EMVASILRAEAGDSNAVLATRGNLNNDIGLPLTLLRLRPSHKYTVAEMGMNHFGEIRYLS 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP +A++ AHL +E IA AK EIFEGL G +N DD + L Sbjct: 174 QMARPTVALVNNATSAHLGGLGSVEGIARAKGEIFEGLALEGMAVINADDLYAPLWTE-- 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G I +FG +K AD ++ ++ S++ ++ + G H +N L Sbjct: 232 -LAGEHDILTFGLAKMADVT-ANYELRADTSYVYMKSPIGGIAFNLQVAGLHNVRNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A ++ K L F +GR + G +ID++YNANPASM+AAI V Sbjct: 290 STVAIAMGARPESIAKGLEAFDGVDGR---LQHRAGIGQALVIDDTYNANPASMRAAIDV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ G+R+ VLGDM E+GE + + H ++ + I+ ++ G L + A Sbjct: 347 LA----ARPGKRLLVLGDMGELGETAAAMHTEIGQYAREAGINGLYTLGDLSLEMSKAF- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ +T + L + + VV+VK S R++ L++ E Sbjct: 402 -GDPAHHYKTPEQLVAGLCHEMDANTVVLVKGSRFMRMERVVQLIVSE 448 >gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] Length = 448 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 131/467 (28%), Positives = 207/467 (44%), Gaps = 19/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W D+ +A+ G + G ++ DSR+ F A+KG +DGH++I A Sbjct: 1 MIGDWLTDDIAKAVGGAAEGDS--VAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+ + + V D L L +L R R + A+TGS GKT Sbjct: 59 VSQGAVAVMAQAK-----ANADVAQIIVPDSLAGLGRLGALNRSRFNGPVAAVTGSAGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE+L LS G++NNHIGVPL+L ++ + +FELG S +GEI + Sbjct: 114 TVKELLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEEHRSAVFELGASAVGEIAYTVA 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +A++ A H+ F + I AK EI GL + G LN DD+ F Sbjct: 174 LARPQVAILNNAAAVHVEGFGDLASIVKAKGEIVCGLPEDGVAVLNKDDANFSAWVE--- 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + SFG +A + + S + ++ G H +N L Sbjct: 231 MAGARKVISFGLDDSAMVRAQNIHLELNGSTFRLSAPEGGIDATLPLPGAHNVRNALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L ++ L+ P +GR L ++D++YNA+P SMKAAI VL Sbjct: 291 AAALALGWTLEEVRDGLASAAPVKGRMN---KLLGINGSVILDDTYNASPTSMKAAIDVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ GRRI LG M E+G +++ H ++A+ + + G ++ Sbjct: 348 ARYP----GRRIVALGHMGELGSVAEDAHREVAQYARDNGVDMLLGIGRWAAEYREGFGD 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V T D + +++ L V+VK S S ++ ++E+ Sbjct: 404 ESPV--VTTHDDIAAWLRERLDSNTTVLVKGSRSAAMENVVKQIVEK 448 >gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter capsulatus SB 1003] gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter capsulatus SB 1003] Length = 483 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 173/476 (36%), Positives = 248/476 (52%), Gaps = 17/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A G + G+SID+RSI P E F A+K DGHDF+ A Sbjct: 1 MAVLWTSIDAAVATGGRATRPF---MATGLSIDTRSIRPGEMFVALKDVR-DGHDFVADA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ P+ V DVL AL L A R R++A +IA+TGSVGKT Sbjct: 57 LKKGAACALVSRIPEGCSEED--PLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS+ + +A S+NNH GVP+TLARMP + DF + E+GM+H GEI L Sbjct: 115 STKEMLRAVLSAQGRVHAAEASFNNHWGVPITLARMPAEADFAVIEVGMNHPGEISPLVK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH A+ITT+A AHL F +++IA KA IF+GLE GT + +L A + Sbjct: 175 MARPHAAMITTVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAK 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + +FG + +D++L K + + ++ + GK M G H A N L L Sbjct: 235 ARAGQVV-TFGPAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALGVL 293 Query: 301 GIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + AD A + ++ P F L D+++NANPASM+A Sbjct: 294 ALARAVGADPAVAALDIGLWAPPAGRGTRERIWLDLIDEAQSFDLFDDAFNANPASMEAG 353 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P GRR+A+LGDM E+G H +AE+ ++ +I V L+G Sbjct: 354 LEVLAGQVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAGPR 413 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + AL +ALPR + ET L + GDVV+VK S +++ L + Sbjct: 414 MRALHEALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKGSKVSLVVDALRK 469 >gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 208/472 (44%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T ++ +A+ G G V+ +S D+R+I F A+ G ++D HDFI A Sbjct: 1 MISL-TLAEIARAVGGELKG--EDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V KGA ++V+ + ++ P V+D AL KL K +AITGS GKT Sbjct: 58 VIKGAAALIVSQKL-----QITTPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEMLT LS + G++NN IGVPLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMLTSILSQKGQVLFTQGNFNNDIGVPLTLLRAKPEDDFAVIELGANHIGEIDYTTR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P +A++ +A AHL F I+ + AK EI+ GL+ +N D + + + Sbjct: 173 LVNPDVALVNNVAAAHLEGFGSIDGVMQAKGEIYNGLKSGAVAVINLDSNGGQYWQD-VL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A S SK F ++ + + +G H N L Sbjct: 232 ADKTVKTVSMNDSKADYFATDIQLNERGEASFIMTTPIGECVIQLSLVGQHNVANALSAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A ++ L+ R LID+SYNA+ +MKAAI +L Sbjct: 292 SLALEFGASLEDVKSGLNQLTKVSAR---AEVIELNKQIRLIDDSYNASVPAMKAAIDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S G+R +LG+M E+GE S + H + + + + +V G + + Sbjct: 349 SNYR----GKRWLILGNMAELGEESLALHRQVGQHAAPFRFDYVLTYGADAKVISE---- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468 + + FI+ L ++VK + S G ++ + E F Sbjct: 401 ESDGIHFCDHQSMIDFIKKQLGHEKAQQQTLLVKGALSAGMSVVVKAIKESF 452 >gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] Length = 455 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 123/463 (26%), Positives = 199/463 (42%), Gaps = 16/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + +Q + + V GI D+R I + F G DGH+F+ A + GA Sbjct: 4 TLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 D+ P+ VDD L AL + A +IA+TGS GKTTTK++ Sbjct: 64 SAAFWQKDV--PNPPADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L+ L + + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 LSGMLRETFRVHRTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSQIAQPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I AH+ EEIA+AK EI GL+ G D+ A Sbjct: 182 IAIITNIGEAHIEYLGSREEIANAKFEIVTGLKADGLFIYPGDEPLLTEHTAL-----PA 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG++ A K E + Q E IG H N + + Sbjct: 237 RSVTFGRTDQATIFATTIKTSEEGTT-FTTNQTADREFYVPIIGEHNVFNSMAAMLAAFE 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + +T AL + R +++++YN++P ++K ++ + Sbjct: 296 LGVEPETIQTALRH---IDRSKSRLEWLTTPKGSRILNDAYNSSPTALKTVLNTFLNMPT 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + VL DM E+G+ S+ H + A L ++ V+L G + D Sbjct: 353 AAKK--YLVLADMLELGDFSEQLHQESARTLENGEVAGVFLYGTAMKNFADEAASLIGQE 410 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VHY + L + ++L + ++VK S S G ++ L+ Sbjct: 411 KVHYFTDKEALTDAVSNALTGNEWILVKGSYSMGLKDVVEKLM 453 >gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 454 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + +I + I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P VDD L A LA + + +IA+TGS GKTTTK Sbjct: 62 GAVATFSEREVA------GHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI V+T I AHL F E+IA K +I +G++ G + D L + Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPESQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + + + G + A N ++ + Sbjct: 236 ----------FGDGAEIFVKDLQESKESLTFTTNVIDRPITLPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D ++AL R + + A ++ + YNANP +M+ + S+I Sbjct: 286 KLLAISDDDIVEALETIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + LS + + G + L + Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYSE------TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + D + IQ L D +++K SNS +++ L + Sbjct: 403 IGKVYYFKKTADENQFDAMLETIQKVLQPADQILLKGSNSMQLVKIVEALEK 454 >gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] Length = 459 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 200/468 (42%), Gaps = 22/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G V G++IDSR I F IKG DGH FI ++ Sbjct: 4 MSLQEITAACHGQYFGGEAVSHIEVAGVAIDSRKIEKDWLFIPIKGARVDGHSFIPQVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA + + ++S P VD AL +A R ++ ITGSVGKT+T Sbjct: 64 KGALCTLSE----VVLENVSHPYILVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L G++NN IG+PLT+ + + + + E+G++H GE+ L + Sbjct: 120 KEMIASVLEQKYHVLKTAGNFNNEIGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT I HL N + I AK E+F+ ++ I LN DD + + Sbjct: 180 RPDICVITNIGLCHLENLIDRDGILKAKTEMFDFMQPDAKIILNGDDDKLITVTD----V 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +T FG S D S + + L ++ + G HM N L Sbjct: 236 KGQTPMFFGLSTELDAFADNIHTHSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGAL 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L + K + P GR + +ID+ YNANP S KA+I VL Sbjct: 296 VGRELGLTAEEIKKGIESLTPVSGRNNM----ILTDSLLIIDDCYNANPVSTKASIDVL- 350 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDAL 418 E R++A+LGDM E+GE + H + S I V G A + L Sbjct: 351 ---SGAETRKVAILGDMFELGEDEKELHRQVGVHASEKGIDLVICIGELSKATAAGAEEL 407 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + +T F + L D ++VK+S+ F ++ L E Sbjct: 408 SAGNQVVHFDTKADFFTKMNELLHKDDTILVKASHGMEFPEIVTRLQE 455 >gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0012] Length = 474 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 153/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA+ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVESSNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S S H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes Clip81459] gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ + PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKDV--PNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A + +A Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VH+ T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455 >gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus pyogenes NZ131] gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus pyogenes NZ131] Length = 463 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 213/471 (45%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG DGH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVEDCLKTFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G+ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + D ++ + + V G + A N ++ + Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I AL G R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + G++IAVL DM E+G+ S H L + L+ NI + G H+ L + Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + VHY + + + ++Q+ L D +++K S+S +L++ L+ Sbjct: 403 AEQVHYFLKAEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453 >gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] Length = 452 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 121/466 (25%), Positives = 197/466 (42%), Gaps = 26/466 (5%) Query: 7 FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ + G + +N IS DSR+I + F A++G +DGH F+ + K Sbjct: 3 LREIPTILSGTFQKISQTLSDKSINKISTDSRTIQENDIFIALQGDKFDGHRFVDEVIDK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++VN ++ + IP V D L A ++A R K II ITGSVGKTTTK Sbjct: 63 GAIALIVNHEVSVKS-TKEIPQIVVKDTLIAYQEIANWWRNHVKIPIIGITGSVGKTTTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ L + +YNN IGVP TL + + ++ + E+ M GEI L+ + Sbjct: 122 EIIAAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQIAC 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I +IT + AH+ + IA AK E+ + + LN+DD A Sbjct: 182 PTIGIITNVGTAHIGRLGSRQAIAEAKCELLAEMPENSVAILNHDDQRLVETAATVWQGK 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T G + + L+ + M+ G H A N L L + Sbjct: 242 TITYGLEGGD------------ITGELLENQILRVEGMDFPLPLPGRHNALNYLAALAVT 289 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D ++ R + + L+DE+YNA SM + L + Sbjct: 290 KELNLDWTFLMEG----VTVNLPQGRSQQYSLKNDVILLDETYNAGLESM---KAALQLL 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421 R +AVLG M E+ + S H ++ E I +++ A+ + + Sbjct: 343 KDTPGTRHLAVLGTMKELADASAELHREVGETAEKLAIDALFILVDDPQSQAITKGV-TT 401 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I T + L ++ + GD ++ K+SNS G R++ +L++ Sbjct: 402 IETQSFPTHEQLIQRLREVIQPGDRILFKASNSVGLNRVVEAVLQQ 447 >gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 131/481 (27%), Positives = 205/481 (42%), Gaps = 31/481 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +LL+A G+ + V IS+DSR++ + F I G D H F+ A+ GA Sbjct: 5 TVKELLEATGGNLLHGQEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGA 64 Query: 66 GLVVVNTDMVASIGSLSIPV-----------------FGVDDVLGALNKLAVAARLRSKA 108 +V + + V D AL L R Sbjct: 65 AVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSL 124 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++ ITGSVGKTTT+EM+ ALS+ K Y G+ N+ +GVP+T+A +P + G+ ELG Sbjct: 125 PLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGVIELG 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 MS GE+ + + R AV+T I AH+ E I K I EG+ G +FLN D Sbjct: 185 MSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILFLNGD 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + K + +G ++ D++ + V + Sbjct: 245 DPLLASVVPKEGRKKVL----YGLGRDCDYRAEDLHLEEGYPVFTAVHGDCRVRVRLKVM 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G HM N + L + ++ A AL F K + G T+ID+SYNA Sbjct: 301 GSHMVSNAMAALAVADTYGLSMEKAALALGQFKG----YKGRQQIFEWGGVTVIDDSYNA 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +P SMKA + VL + + IAVL DM E+G ++ FH ++ + + + V L G Sbjct: 357 SPVSMKAGLEVLDSVKGERK---IAVLADMKELGPDTERFHAEIGAYIGEHPLDMVLLLG 413 Query: 409 FHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + DA + +++ ++ ++ +GD ++ K SNS + L Sbjct: 414 ELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILFKGSNSMKLSEAVKHLK 473 Query: 466 E 466 E Sbjct: 474 E 474 >gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] Length = 456 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 199/459 (43%), Gaps = 18/459 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L A G +S D+R+I P F A++G +DG+ ++ A +KGA Sbjct: 5 TLDFILNATGGRLTRACFNCRCTDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + PV VDD AL LA A R R ++ +TGSVGKT+TKEM Sbjct: 65 SIALAERPCPGW------PVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEM 118 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS +T G+ NN IG+P+++ + + +FE+GMS GEI L+ + P Sbjct: 119 IFSVLSQAFRTLKNEGNLNNLIGMPMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPD 178 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I VIT I +H+ E I AK EI +G+ G + LN DD L A + Sbjct: 179 IGVITNIGVSHIEMLGSQENILKAKLEILDGMRPGGKLILNGDDP----LLAGVQTDKAE 234 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I ++ + + + +E + ++ G S+ G H N L + + Sbjct: 235 VITYGIENTGCAYTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRV 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + DT + P R + G T +++ YNA+P SM++A VL + Sbjct: 295 LGMEPDTIAAGFLQYAPTGYR----QKIERVGGVTFVEDCYNASPDSMRSAFDVLRTV-- 348 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIH 423 GRR+AVL DM E+G+ + H + + + ++ G + ++ Sbjct: 349 QKTGRRLAVLADMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQEGYTQAGGTQ 408 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + L + L +GD V+ K S +I Sbjct: 409 GAHFTDKAALTDALCQMLREGDAVLFKGSRGMRLEEIIQ 447 >gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] Length = 433 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 136/447 (30%), Positives = 202/447 (45%), Gaps = 28/447 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T ++ A+ G + G SID+R+I P + A++G +DGHDF+ A Sbjct: 1 MIEL-TLSEVAPALGTTWKGQ--EIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 QKGA ++V D+V +P V D AL LA R R ++AITGS GKT Sbjct: 58 QQKGASAIIVERDVV-----CDLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TTKEML + + G+ NN IGVPLTL + + + I E+G +H G Sbjct: 113 TTKEMLKTIFTQKISAESNEINVLATQGNLNNDIGVPLTLFNLQANHRYAIIEMGANHAG 172 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI +LT + +P +A IT APAHL F +E +A AK EIF L + G +N DD++ Sbjct: 173 EIAYLTQMAKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSHLTEDGIAIINNDDAYTT 232 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L I +F AD + + + + Q + + G H Sbjct: 233 LW---HELAASHQINTFALENTADVTAKDIQLNEDSCDFILHTQKSDIAIHLPLPGQHNI 289 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L ++ + L P +GR + ++ TLID++YNANP S+ Sbjct: 290 MNALTASACALACGCSLEIIQQGLQNMQPVKGRLQLHKING----ITLIDDTYNANPTSL 345 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AA+++LS P +LGDM E+G+ S FH + + H+W G Sbjct: 346 NAALAILSNYPP----PYWLILGDMKELGQKSAEFHQQAGQRAREVGVEHLWAIGDLSRY 401 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSS 440 D+ ++ D L +Q+ Sbjct: 402 AVDSFGEG--AYHFTNHDELINSLQNQ 426 >gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 129/471 (27%), Positives = 206/471 (43%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ +++ D++ G + G G+S DSR+ E F ++G +DGHDFI A Sbjct: 1 MSAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRA 60 Query: 61 VQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +++G +V + + V + L AL LA R R +IAITGS Sbjct: 61 IKRGVRALVAAEAWWQRQNHQFPKDLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSC 120 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ + L+S + + NN IG+P TL + + + E+GM+H GEIR Sbjct: 121 GKTTTKEMIALVLASRFRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMNHFGEIRR 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + RP IAV+T + AHL +E +A AKAE+ +GL G I N DD + L+A Sbjct: 181 LAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADD---QRLRA 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 H +T+ + E++ QGK + G H N L Sbjct: 238 ALHHFKGQTLSFGFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNAL 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + +AL F + R + + ++ YNANP SM A+ Sbjct: 298 AAAAVGLALGLPAEQISQALGRFAGLKHRSQMQCHTSGIH---IFNDCYNANPGSMAMAL 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + +GR +A LGDM E+G + H L + + + + + G +++ Sbjct: 355 QTLASL--KNQGRAVAALGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSVRQG 412 Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + I+ GD ++VK S +L+ L Sbjct: 413 ALAAGMPHSRIYLVASHAEGADIIRGFCRPGDTLLVKGSRGATMEKLLACL 463 >gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] Length = 465 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 125/470 (26%), Positives = 193/470 (41%), Gaps = 20/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ +A G G V G++IDSR + F AI G + H FI Sbjct: 11 MKNL-TLRNITKACHGEYRGPENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIP 69 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++KGA V+ + D +G P V+ AL A R ++ ITGSVG Sbjct: 70 DTIKKGAMCVISHED----LGETDFPYILVESTGQALLDTAKLYRDSFDIKVVGITGSVG 125 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM+ LS + +G++NN G+P+T+ M + E+G++H GE+R L Sbjct: 126 KTSTKEMIASVLSQKYCVHKTLGNFNNEWGLPITIFEMNEKHQVAVLEMGVNHFGEMRRL 185 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P I VIT I AHL F E I K+++ + ++ G+I LN DD L Sbjct: 186 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGSILLNGDDD----LLRD 241 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + FG KN F + S + L + Sbjct: 242 MGPVKGVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCIVPLPGAHMVQNA 301 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V IKA P + ++D+ YNANP SM+A++ Sbjct: 302 LAGTAVGYQLGLTPAEIKAGIEGLP---SIPGRNNIIQTDKIIILDDCYNANPISMQASL 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ GR++AVLGDM E+GE + H + I V G L Sbjct: 359 DVLNMAI----GRKVAVLGDMGELGETGKELHYETGAHAGDIGIDLVCGIGELSKELVAG 414 Query: 418 LPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ + GD ++VK+S+ F +++ L + Sbjct: 415 ASEHGCEAKWFPAKADFLAEMKHLIQPGDNILVKASHGMQFPEIVDELQK 464 >gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 210/464 (45%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V++ L AL +LA + K +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKDV--PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI GL +G + ++++ + G Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS A+ + + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421 G+ + VL DM E+G+LS H + AEVL I ++L G + A +A Sbjct: 353 SKGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQ 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + +T + L + S + + ++VK S G ++ L+ Sbjct: 412 GKVQHFDTKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 455 >gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 203/472 (43%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L +++++A+ + ++ +S+ I P F +K DGHDFI Sbjct: 1 MKALA-INEIVKAVGAVDYDSTAAHNLITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQD 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA + D + IPV V+D A LA +IA+TGS GK Sbjct: 59 AIDHGAQATLWAND--PADAPSEIPVIQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M LS+ Y G+YNN +GVP T+ MP D + + E+GMS GEIRFL Sbjct: 117 TTTKDMTAATLSTTFNVYKTQGNYNNQLGVPFTILSMPEDTEVLVVEMGMSGPGEIRFLA 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +AVIT I +H+ E IA AK EI EGL++ GT D+ + Sbjct: 177 QLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGLKEDGTFIYPGDEPLVD---QAV 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + G + D E + L + N+ Sbjct: 234 VDMPEIKKIRVGLDDSEDVYAENIVNEREHTHFYTNLSPNVELSI----PVSGDYNVKNA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + + + + R + + +++++YNANP++M+A I Sbjct: 290 LMACAVAYSQGLAVEQIKTPLSQFKLTANRSEWLMGKDDIQILNDTYNANPSAMRAVIRN 349 Query: 360 LSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 SQ+ P ++ VLGDM E+G+ S S H +AE + +I V+L G + AL AL Sbjct: 350 FSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAEEIDSPHIDGVYLYGKEMQALARAL 409 Query: 419 PRSI----HVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +HY E L + + D ++VK+S+ G ++ L Sbjct: 410 QEKGYPEDKIHYYPEDKAALIKDLLDQVQSQDQILVKASHGMGLAEVVAALK 461 >gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] Length = 509 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 123/469 (26%), Positives = 209/469 (44%), Gaps = 21/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +T ++ G V G ++IDSR+++ + F A+ G DGHD+ A + Sbjct: 46 FTAQEIASITGGELSC-PSDVTVTGQVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQ 104 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGK 119 GA LV+ ++ +P V D AL LA A R + +I +TGS GK Sbjct: 105 GAVLVLSQKNI------KGVPCVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSAGK 158 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+++ L++ GS NN +G+PLT+ + DF + E+G S +G++ +LT Sbjct: 159 TTTKDLMGQMLATYGNVVVPAGSLNNELGLPLTVLKADETTDFLVTEMGASAVGDLHYLT 218 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV+ + AHL F E +A AK+E+ GL G LN DD +K + Sbjct: 219 SIAPLDIAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLPQGIAVLNADDHRVIAMKELA 278 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 H + +FG + AD + + + Sbjct: 279 HGQ----VRTFGSVRGADMRAINARTDAAGRAHFDVETTAGDTASVTLTLVGEHHVTNAL 334 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ + A+++ + R T+ID+SYNANP SM+AA+ Sbjct: 335 AALTAVTALGMPLDQAAVALSAARATSPHRMDVVDRPDGVTIIDDSYNANPDSMRAALRA 394 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418 L+ ++ + R +AVLG+M E+G S+++H D+ ++ NIS + + G + D Sbjct: 395 LATVAG-RQRRTVAVLGEMRELGPQSRTYHDDIGRLVVRLNISRLIVVGQGAQGIADGAL 453 Query: 419 ---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + L DVV++K+S+ G ++L + L Sbjct: 454 QEGSWGDEVVEVADLNAAHAALNDYLQPNDVVLIKASHGSGLWQLADEL 502 >gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] Length = 478 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 161/476 (33%), Positives = 242/476 (50%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G +IG +G+SID+R++AP + F A+K DGHDF+ A Sbjct: 1 MS-LWTAKEAESATGGRAIG---DWTCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V V + P+ V+DVL L L AAR R++A ++A+TGSVGKT Sbjct: 56 LEKGAGAALVTH--VPEGVAEDAPLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML + + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L Sbjct: 114 STKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQ 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A++TT+A HL F+ + EIA KA +F+GL+ G +N D +L AK+ Sbjct: 174 MAKPDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAV 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ + ++L + + + + G + G H A N L L Sbjct: 234 DRRLREVEF--GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKE----GRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + AD+ A +L + P + LID+SYNANP SM AA Sbjct: 292 ASAQAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAA 351 Query: 357 ISV------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + V I +GRRIA LGDM E+G + H LA + + + + G Sbjct: 352 LEVLAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +L D LP ++ET L + S L GDVV+ K S S +++ + + Sbjct: 412 MKSLYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLSMKLGLIVDAIRK 467 >gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] Length = 462 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 219/470 (46%), Gaps = 18/470 (3%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T ++ QAI ++ + G+ DSR I + F + H DGHD+I +A+ Sbjct: 3 MTIGEVAQAINANTENFDKAMLDESLTGVCFDSRKIQAGQLFVPLVAEH-DGHDYIDNAI 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA + +D A L+IP VDD+L A +L+ + +IA+TGS GKTT Sbjct: 62 AGGASATLWASDH-ADRLPLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK+M+ LSS ++NN IG+P T+ +M + +F + E+GM G++ FL+ L Sbjct: 121 TKDMIAAILSSTFNVTKTQDNFNNEIGLPYTILQMESNTEFLVAEMGMDRPGQLDFLSKL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP +AVIT I AH+ F ++IA AK EI GL+ G + D+ + Sbjct: 181 ARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKADGFFVYDGDEPLLTERAQQVDE 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +FG+ + D K + ++ IG + N L + Sbjct: 241 --SVIKATFGRKDSNDVFAIDSK-DGQYQTQFHVNLWPEIDFTIPMIGDYNVNNALAAIS 297 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + I L+ F + R + ++ + YN+NP + K ++ Sbjct: 298 VGRIFRIHPQMMADKLAKF---DLTKNRTQWLSGSKGERILSDVYNSNPTAAKEVLTAFK 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418 + +GRRIAVLGDM E+G S++ H LA+ L +I V+L G + AL + L Sbjct: 355 NTT--TKGRRIAVLGDMLELGTQSKAMHASLADALDPASIPVVYLIGADMDALYEKLKPV 412 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P ++H + ++ +D L +Q+ L D V++K+S+ ++ L++ Sbjct: 413 YAPENLHYYQADQLDELTSDLQAELSADDEVLLKASHGLHLENVVAKLVK 462 >gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis ATCC 367] gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis ATCC 367] Length = 461 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 125/466 (26%), Positives = 205/466 (43%), Gaps = 19/466 (4%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ A+ + V ++ DSR + P F + G H DGH FI A+ GA Sbjct: 5 LAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGGLFIPLTGEH-DGHQFIQSAIDHGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + D+ ++ PV VDD L AL LA + ++A+TGS GKTTTK+M Sbjct: 64 VATLWARDLASA--PADFPVIQVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTKDM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS+ ++NN IGVP+T+ M + + + E+GM G++ FL+ LV P Sbjct: 122 IAAVLSTQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLSQLVSPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+IT I AH+ F ++IA AK EI GL G N D+ L + + Sbjct: 182 LALITMIGEAHIEFFGTRDKIADAKMEITHGLSDDGVFVFNGDEP----LLRERATELTQ 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG+ D + Q + IG + N L L + + Sbjct: 238 RQVTFGQQGTDDLFATDVTGTP-TTTSFTTNQWPEVTFTIPMIGTYNVNNALAALSVAML 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++A +AL+ R + ++ + YN+NP + K ++ SQ Sbjct: 297 YRIRPESAKQALAT---VSLTENRAEWVTSASGAAILSDVYNSNPTAAKEVLTAFSQTPV 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSI 422 G+R VLGDM E+G+ + + H LA + I HV+L G H+ A + Sbjct: 354 --TGQRYVVLGDMLELGDQADAMHASLASAIDATKIDHVYLVGPHMLALQAALAQQQPQL 411 Query: 423 HVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V + E + L + +Q+ L D +++K S+ +++ L + Sbjct: 412 AVSHYETTDLATLTVDLQNQLTADDQILLKGSHGIHLEQVLASLQD 457 >gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] Length = 474 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + P + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GK TTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] Length = 466 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 200/477 (41%), Gaps = 27/477 (5%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MN P+ T I G SI + + DSR++ P + F A+KG +D HDF+ Sbjct: 1 MNRQPMTTLQQAAGWIAGASISGDATCSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLA 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V +GA V+V+ + + +P V D L +LA R +A+TGS G Sbjct: 61 DVVARGAAAVMVSRKV-----DVDVPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTT KEM+ ++ G+ NN IG+PLT+ R+ + ELGM+H GE Sbjct: 116 KTTVKEMIAAIFAAAVGEGDRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGET 175 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +L + +P +AV+T H +E +A A L G D Sbjct: 176 IYLAGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHASAIAALPADGVAVFPVDAESGGAY 235 Query: 236 KAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A A G + + SFG +AD + + ++V + + H +G H + Sbjct: 236 AAIWRQAAGTRKVLSFGTDASADVRAT-VSLENGVQVLDVTAPDRRFTLRLHVLGVHNVR 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L DV ++ F +GR + +ID++YNANP SM+ Sbjct: 295 NALAATACALAAGVDVAAIQAGIAGFTAVKGR---LQVKHTPAGTVVIDDTYNANPDSMR 351 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ + R+ VLGDM E+G+ FH ++ I +W +G Sbjct: 352 AAIDVLAGFAT----PRLLVLGDMGEVGDQGPMFHTEIGAYARERGIDALWATGELAPHA 407 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-----VVVKSSNSCGFYRLINLLLE 466 A Y + L +++ +G V V+VK S R+++ L+ Sbjct: 408 VQAYGGGAR--YFARAEDLAQALEAD-KEGTVANAAAVLVKGSRFMRMERMVDALVA 461 >gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] Length = 459 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +AI I V +S DSR + F ++G DGH ++ A Sbjct: 3 MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +D I + P+ V+D L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAVASLWASDH--EITDQTHPLLVVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ ++NN IGVP+TL M + + + E+GM ++ FL+ LV Sbjct: 120 DMIASILSTQFNVTKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFDQLDFLSKLVN 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AH+ F ++IA AK EI GL++ GT+ N D+ L + Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP----LLEERVKDL 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + E +G + N L + + Sbjct: 236 TQRQMRFGRQLSNNLYATSVHDEP-RQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVG 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 IL +AL+ E R + ++ + YN+NP + K + +++ Sbjct: 295 KILHITPAHMKQALAN---VELTENRAEWVKGKNGEQILSDVYNSNPTAAKEVLKTIAET 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 +GRRIAVLGDM E+G+ + H LAE + I+ V+L G + LKD L Sbjct: 352 PV--DGRRIAVLGDMLELGDAAPKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 IH + + + L + ++L D+V++K+S+ ++ L E Sbjct: 410 PAEDIHHYAASDLQQLIADLTATLTGEDIVLLKASHGIHLEEVLTALKAE 459 >gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 454 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 218/467 (46%), Gaps = 21/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58 M + L + + G + ++G+ IDS++I F I DGH ++ Sbjct: 1 MIQM-NLKKLEEVVDGVGLQESFHHIEIHGVCIDSKNIKEGNLFVPII--RVKDGHGYVK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA + IP+ VDD L AL +LA R +I ITGS G Sbjct: 58 EAMDNGAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT K++++ LS+ + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L Sbjct: 116 KTTVKDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + +P +A+IT I +HL EEI+ AK EI +GL++ G + N D E L ++ Sbjct: 176 SQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGLLLYNGD----ETLLSR 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + SFG+ D + ++ +V HG + + + Sbjct: 232 KNNVLVLECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKHNILNTIVGI 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 +G + + R++ + FT+I++++NA+P+SMKAAI Sbjct: 292 AVGQFYNVPTEKIQDA-----LRQINITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIE 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +++ + + I V+GDM E+G+ ++++H ++ ++L+ NIS+V+ G + + Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKEAETYHREIGKMLNQENISYVFTYGEMAEIVAEEA 404 Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + V + + + DVV++K S ++ Sbjct: 405 RKKYDTGKVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQ 451 >gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium cylindroides T2-87] Length = 453 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 201/466 (43%), Gaps = 14/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T ++ + +G + G+ IDSR I + + G DGH FI Sbjct: 1 MI-VKTIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +QKG + D I VDD L AL LA A +I +TGS GKT Sbjct: 60 IQKGVKATLWQKDHTPY--PEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSNGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + K+ML S KKT G+ NN IG+PLT+ + DV+ I E+GM + GEI FLTH Sbjct: 118 SCKDMLYSIFSQEKKTQKTQGNRNNEIGLPLTVLDLDKDVEVAILEMGMENKGEIDFLTH 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP +++ITTI AH+ N G ++IA AK EI E L+ G + + + + Sbjct: 178 IARPDVSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFLYDKESPEIQECLLEMD 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K + SFG ++ +E + ++ + +G A+N L + Sbjct: 238 IDPSKRLVSFG---FNGDISIISSIDYTENGIEFYCSSLTDKITLNALGDFQAKNALPCI 294 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + +K L K L +ID++Y +NP S KAAI L Sbjct: 295 YVALDQKISTSSILKGLKDLE----MTKMRTALLKVHDAKIIDDTYKSNPESAKAAIDTL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ IAVL DM ++G H + N+ V+ +G A Sbjct: 351 MKVQAKK---HIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYATGPLSKYTIKAC-T 406 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +I + ET D + ++ L + +++K S + +++ L E Sbjct: 407 NIESKWFETKDEIVEELKHLLNEDCAILIKGSRAMHMDEIVDKLKE 452 >gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 509 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 148/514 (28%), Positives = 241/514 (46%), Gaps = 58/514 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122 A +V+ S P+ V D L AL+ +A A +IA+TGSVGKTTT Sbjct: 64 AIAAIVSEGKYK-----SFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+ML LS ++A G+ NN+IG+PLT+ + P + + I E+GM+ GEI+ L+ + Sbjct: 119 KDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKIS 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P+IAVIT I PAH NFS + ++A AK EI G++ GT+ L+ D+ +++ L + ++ Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRN 238 Query: 243 ----------------------------------------------GIKTIYSFGKSKNA 256 + K Sbjct: 239 VISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIP 298 Query: 257 DFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 + + + + S + + G H A ++L +V L D+ Sbjct: 299 ASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLP 358 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL F +GRG ++ N+ + LID+SYNA+PASMK AI LS S + +A+ Sbjct: 359 LALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRK---VAL 415 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+G+ S FH DL ++++ NI V+ G +L L + LP +I + + L Sbjct: 416 LGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLK 475 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + + D ++VK S ++ + ++ Sbjct: 476 SDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 509 >gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus ATCC 10987] gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus ATCC 10987] Length = 451 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 219/463 (47%), Gaps = 20/463 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + + G + ++G+ IDS+++ F I DGH+++ A+ Sbjct: 1 MNLKKLEKVVNGEGLQESFHLIEMHGVCIDSKNMKEGNLFVPII--RVKDGHEYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 59 NGAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGITGSNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LSS + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + Sbjct: 117 KDIIGGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIA 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A+IT I +HL EEIA AK EI +GL G N D+ L +++ + Sbjct: 177 QPDVAIITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLFLYNGDEP----LLSQNINM 232 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 SFG D + ++ + +L ++ G H N ++ + + Sbjct: 233 LGIESKSFGGKYTNDLFPTNVQL--DEYGVHFKLNNTKIQYDVPLHGKHNILNAIVGIAV 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ +AL R++ + FT+I++++NA+P+SMKAAI L + Sbjct: 291 GQFYKVPIEKIQEALQQ---INITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQK 347 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 ++ + + I V+GDM E+G+ ++++H ++ ++L+ +I +V+ G + + ++ Sbjct: 348 LNAYEKK--IIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFTYGALSEIVAEEARKNY 405 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 V + D + I + DVV++K S ++ Sbjct: 406 HTEKVQSFDNKDEIAEEILKVITKKDVVLLKGSRGMALEEIVQ 448 >gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 457 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + + GI DSR I F ++G + DGH FI A+ Sbjct: 3 LTFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 62 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457 >gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 450 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 220/468 (47%), Gaps = 24/468 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW ++ + + + + SI+S+SI F +KG +DGHDFI A Sbjct: 1 MS-LW-LSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGK 119 + +GA + D+ S P V+D L A+ LA A R R +I ITGSVGK Sbjct: 59 ISRGAISFITQKDV---NTEKSCPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE + LS+ ++Y G++NNHIG+P ++ +P +V E+GMS+ GEI FL+ Sbjct: 116 TTTKEYVFNVLSNKFRSYKNEGNFNNHIGLPYSILNIPDEVKVATLEMGMSNFGEISFLS 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P+I +IT I AH+ N I AK+EI +G+ G + +N D+ + + Sbjct: 176 KIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEIQDGMPNDGILIINNDNDILYSHRHEL 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G +ADF+ + ++ + + + +H N L Sbjct: 236 ----KRKVVTVGIENDADFRAKDIQKVDNGFFFV----VSNHKYFIESFNFHDIYNSLFA 287 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + IL + + K + R + + T++D+SYNA+ SM +AI+ Sbjct: 288 IAVGEILGIEKEAIEKGILKKCGLRRRF----EVIKKDGLTVVDDSYNASTHSMMSAING 343 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + S G++I VLGDM E+GE S+ H + + + I + +G + D + Sbjct: 344 VCGFS----GKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICTGKDAFYIFDEVR 399 Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ Y + + ++ + VV+ K+S L++ L Sbjct: 400 KNSSSIKAYYASKEECLNILKKEIEIETVVLFKASRGMKLDELVDNFL 447 >gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes LO28] Length = 447 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 122/445 (27%), Positives = 201/445 (45%), Gaps = 15/445 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ D+R I + F G DGH+F+ A + GA ++ Sbjct: 13 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNV--PNPPTDF 70 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 PV V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++ Sbjct: 71 PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 130 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ Sbjct: 131 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 EEIA AK EI G E L + G +FGKS+ A+ + Sbjct: 191 EEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAAEIYPLEI 245 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + +E + + +E+ IG H N + + + + + AL Sbjct: 246 RAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNME-- 302 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + +++++YN++P ++K + + G+ + VL DM E+G+ Sbjct: 303 -RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLADMLELGD 360 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440 LS H + AEVL I V+L G + A + I VH+ +T + L + S Sbjct: 361 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 420 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 421 IKGNEWILVKGSYGMGLKDVVENLI 445 >gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 450 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 211/471 (44%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + + L Q + G P V+GI+ DSRSI +AF A+KG +++GHDFI Sbjct: 1 MAFHLSLNQLAQLLSLQDNGDISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A++KGA ++V+ + + S +IPVF V + L +LA R + +IAITGSV Sbjct: 61 DMAIEKGAATLIVDQPVSVNS-SSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSV 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L++ K + + +YNN IGVP TL + + + E+GM GEI Sbjct: 120 GKTTTKELIASVLATQGKVHKTLANYNNEIGVPKTLLELDETHNSAVIEMGMRGRGEIAL 179 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + RP IAVIT + AH+ IA AK E+ + LNYD Sbjct: 180 LAQITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAESPSSSIAVLNYDHPLLTETAK 239 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T G + L+ ++ G H A N + Sbjct: 240 RVWQGETITYGFSGGD------------IVGELLDLTTLRVNGLDFNLPLSGRHHALNFM 287 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + IL D + + + V P + L+DE+YNA SM + Sbjct: 288 AALAVAKILGIDWTSLQEGIKVNLPSGRAKRYQ----LATDILLLDETYNAGLESM---L 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415 + L + R IAVLG M E+G S+ H + E + I +++ + Sbjct: 341 AALDLLKATPGQRHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIA 400 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +A ++ +T L ++ + GD ++ K+S+S G R++ L++ Sbjct: 401 EAA-TAVDCECFQTHADLINRLKEVIDFGDRILCKASHSVGLNRVVEELIQ 450 >gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 451 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 197/466 (42%), Gaps = 16/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I + G+SIDSR I Q F KG H DGH ++ A Sbjct: 1 MIEV-TLEQIKTWIPCEIENEFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GAG ++ P+ VDD L AL LA A +IA+TGS GKT Sbjct: 60 LKDGAGAAFYQK-GEPLDENIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ L K G+YNN IG+PLT+ ++ +D + I E+GMS EI L+ Sbjct: 119 TTKDMIESVLKPQFKVKKTQGNYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSK 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P IA+IT I +H+ + E IA AK+EI GL+ G + D+ E + Sbjct: 179 LAQPDIAIITNIGESHMQDLGSREGIAKAKSEITLGLKPGGLFIYDGDEPLLEPYANEIQ 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + SFGK+ + + +G H +N + + Sbjct: 239 NADL---VSFGKNSDNTLVSTIETIKDHGIAFTINHDEH---YELPILGEHNMKNATIAI 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L T + G R + +I+++YNA+P SMKAAI L Sbjct: 293 AVGKRLNLTYQTI---FNNLKNVVLTGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419 S + EGR+I VLGD+ E+G SQ H + +I ++ G + Sbjct: 350 SGM----EGRKIIVLGDVLELGPDSQIMHEAVGLYFEDKDIDALFTLGNEAAHISHTGKA 405 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L ++ + D V+VK S ++ L+ Sbjct: 406 FVKKSEAFKEKADLIRSLKGYVQANDKVLVKGSRGMKLEEVVEALI 451 >gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] Length = 450 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L ++ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016] gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 474 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 122/466 (26%), Positives = 209/466 (44%), Gaps = 14/466 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +F D+++A+ G I IS DSR + + F A+KG ++G++++ A +KG Sbjct: 15 MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKG 74 Query: 65 AGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +V+ S + V + AL +LA R + II +TGSVGKTTTK Sbjct: 75 ASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTK 134 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L K + G++NN IG+P L ++ + + E+GM+ GEI + R Sbjct: 135 DIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAAR 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT + AH+ N + I +AK EI + K T+ +N D+ L+ K+ L Sbjct: 195 PDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNFTLN 254 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 G++ + ++ + + + + G + N L+ + Sbjct: 255 ---RVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCG 311 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D + + R + R FT+I++ YNANP SMKAAI VL + Sbjct: 312 RLLNMSYDEIREGVKNIKLTSMRMEIIRKKE----FTIINDCYNANPESMKAAIDVLKEF 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420 + + IAVLG M E+GE + H ++ +I + G + + + Sbjct: 368 KSNRK---IAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEYKKDFERGFKSTNK 424 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + L FI + GD ++VK+S +I L + Sbjct: 425 KGNFMGFDKYEDLKDFILKYIERGDTILVKASRFMKLEIIIEPLKK 470 >gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 194/464 (41%), Gaps = 17/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + + G ++G+S DSR+I + + G +DG F+ KG Sbjct: 5 NLGQIAEMLGGSLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +++ D ++SIP VDD L AL LA + R +I ITGS GKTTTK+ Sbjct: 65 ASAFLIDRDY-EIKNNISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKD 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L LS+ KT IG+ NN IGVP T+ + D + + ELG G+I +++ P Sbjct: 124 LLYEVLSTKYKTQKTIGNLNNEIGVPKTILSLNEDTEIAVVELGTDKFGDISLTSNIALP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I +HL N E I AK EI EGL G N DD + K Sbjct: 184 DIAIITNIGDSHLHNLKSKEGILKAKMEIVEGLSDDGIFIYNGDDETMK--KEIDSYKVD 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + I SFG + DF +++ + + +G H N L I + Sbjct: 242 QKIISFGLEDDNDFVVKEIPSTPAKVSFSHDGE----TYDIPLLGRHNIYNGACCLLIAN 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 IL D + L P R ++D+SY +NP S+++ ++ + Sbjct: 298 ILGLDTNEVKSGLVKVRPANNRSSMIELDGFD----VLDDSYKSNPQSLRSGLATCKLLD 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + I VLGDM E+G+ H ++ + +I + G + + Sbjct: 354 GYNNK--IVVLGDMLELGDKEDELHYEVGLDIDPKDIHYCLFFGDLSYHMYKGALNNFPK 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + D L ++S + +V VK S+ +I + Sbjct: 412 DRAFHFTDKDDLIDKLKSFITKSTLVFVKGSHGMHMEEIIESIR 455 >gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 455 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + I + +N I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKIVDAQNNISDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A LA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M++ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + R Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G++ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + + E+ + + V G + A N ++ + Sbjct: 233 ---VIRFGDYQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420 + + G++IAVL DM E+G S + H L + LS I + G + L Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV + + + + +Q L D +++K SNS G +L+N L+E Sbjct: 403 EGHVQFFQKNQQEDQFEDMGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 464 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 208/473 (43%), Gaps = 17/473 (3%) Query: 1 MNPLW--TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ + + +++ + I + + G+ IDSR + + I G + +GH ++ Sbjct: 1 MSKMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A++ GA V+ + V V+D AL +LA A R + ++ ITGS Sbjct: 61 QQAIEHGAKAVLWERK--EQNPPHEVVVILVEDTTVALQQLAKAYRDQLNLKVVGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L L+ T +G++NN IGVPLTL + + + + E+GM +L E+ F Sbjct: 119 GKTSTKDILASVLAKHFITQKTLGNFNNEIGVPLTLLSLSENCEAAVVEMGMENLNELSF 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT++VRP IA+I+ + AHL N +E IA AK EI EGL + G + N D Sbjct: 179 LTNIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGLNEHGLLIYNGDQQLLRDAAV 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G I +FGK + D + Q + + + G M Sbjct: 239 EKQIPGYIKIRTFGKEAHNDVIVSHVHQLEDGLRFSINEDDWVYHLDMIGKHQAMNATAA 298 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L+ + A + ++++SY +NP S AA+ Sbjct: 299 WIAAKALGLSEEEIAEGFASVEKTGLRNE------LVKVNQCLILNDSYKSNPQSALAAV 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + + + +AVLGDM E+GE S H L + +S Y+I V G + Sbjct: 353 DTMEEFDIPYK---LAVLGDMLELGETSDMIHYTLGKDISRYHIQEVLTIGDMACYIAQG 409 Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ V + + L +++ + +++VK S ++++L++E Sbjct: 410 ARDNMEHTLVRHFTDKEALISYLKPYMHKECMLLVKGSRGMKLDEVVDVLVQE 462 >gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 454 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 128/461 (27%), Positives = 200/461 (43%), Gaps = 15/461 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + I Q ++G+SIDSR+I F KG + DGH F+ A++ GA Sbjct: 5 TLKQIKEWIPCEIDDQYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G D P+ VDD L AL +LA A +IA+TGS GKTTTK+M Sbjct: 65 GAAFYQNDAKPDHEIEG-PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L K G+YNN IG+PLT+ ++ D + I E+GMS EI L+ + P Sbjct: 124 IESVLKPAFKVKKTQGNYNNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK EI GL+ G + D+ LLK L Sbjct: 184 IAVITNIGESHMQDLGSREGIARAKFEIVSGLKPGGVFIYDGDEP---LLKPHVDTLKDT 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S G +++ + + + + NM +SI Sbjct: 241 EAISIGLAQDNSVVCSVEQHDAMGIAFTLNTNEHYQIPIL------GTHNMRNAAIAISI 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + + G R ++I+++YNA+P SMKAAI L+ + Sbjct: 295 GKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNASPTSMKAAIDTLAAM-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424 +GR+I +L D+ E+GE S H + + L I+ + G + + + ++ Sbjct: 353 --DGRKILILADVLELGENSAEMHASVGDYLQDKGINLLLTFGDEAVHIYENGKANVDEA 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H+ + L FI D +++K S + + L+ Sbjct: 411 HHFNHKNELIEFITQHAQAEDEILIKGSRGMKLEEVSDALI 451 >gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] Length = 462 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 116/466 (24%), Positives = 207/466 (44%), Gaps = 17/466 (3%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +++ + I + + G+ IDSR + + I G + +GH ++ A+ G Sbjct: 8 SIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNG 67 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + I V VDD AL +LA A R + ++ +TGS GKT+TK+ Sbjct: 68 ARAVLWER--REANPPKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKD 125 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L L+ T +G+YNN IGVPLTL + + + + E+GM +L E+ FLT +VRP Sbjct: 126 ILASVLAKHFITQKTLGNYNNEIGVPLTLLSLSENCEAAVVEMGMENLQELSFLTQIVRP 185 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+I+ + AHL N +E IA AK EI EGL + G + N D + G Sbjct: 186 DIAIISNVGTAHLENLGTMENIARAKMEITEGLGEHGLLIYNGDQQLLRNAAIEKQIPGC 245 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I +FGK + D + + +Q + ++ Q ++++ + + + Sbjct: 246 IKIRTFGKDEQNDVVVHQVRQLPDGLCFSIKDQVYHLDMIGKHQAMNATAAWIAARALGL 305 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + ++++SY +NP S AA+ + + Sbjct: 306 DEEEIAQGFASVEKTGL--------RNELVRVNQCLILNDSYKSNPQSALAAVDTMEEFD 357 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423 + +AVLGDM E+GE S H L + +S Y++ V G + ++ Sbjct: 358 IPYK---LAVLGDMLELGETSDMIHYTLGKDISSYHLQEVLTIGDMACYIAQGARDNMEH 414 Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + + L +++ + +++VK S +++ L++E Sbjct: 415 TLVRHFTDKEELLNYLRPYMHKECMLLVKGSRGMKLDEVVDELVKE 460 >gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] Length = 458 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 126/474 (26%), Positives = 202/474 (42%), Gaps = 22/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ G G V I+ DSR AP F I G DGH FI Sbjct: 1 MKNL-TLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPGCLFVPIVGERVDGHSFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + ++ GA + ++ + P V L A+ +A + K ++ ITGSVG Sbjct: 60 NVMEAGALATLSQKELPEAR----FPYIQVASSLQAVKDIAKFYLEQLKIPVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKE++ L G++NN +G+PLT+ R+ + + E+G+S GE+ L Sbjct: 116 KTSTKEVIASVLKEKYHILKTQGNFNNELGLPLTVFRLRDYHEIAVLEMGISDFGEMSRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP VIT I HL + + AK E+F L++ G LN DD ++ Sbjct: 176 ADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKEGGRAILNGDDDKLATIRQV 235 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 I + AD + + + + L V G HM N L Sbjct: 236 QGKEPIFFGMNPAFPVYAD---QIQSRGLKGMSCRIHLPEAEFAVEIPMPGQHMVYNALA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + + + P GR + F ++D+ YNANP SMKA++ Sbjct: 293 AAAVGMVHGLTPEQIRRGIESLEPISGRFRMIE----TDHFLIVDDCYNANPVSMKASLD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---K 415 VL GR++A+LGDM E+GE + H ++ + + + +G + Sbjct: 349 VLKD----ALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLLICTGSLSRYMSEAA 404 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 A ++ V Y L + S L DGD ++VK+S+ + RL+ L E++ Sbjct: 405 KAANPNLEVIYEVDSKKLERNLFSYLRDGDTILVKASHFMHYERLVQRL-EQYK 457 >gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] Length = 450 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L I+ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] Length = 450 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 206/470 (43%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSEC---SELTKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L ++ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] Length = 458 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 123/459 (26%), Positives = 194/459 (42%), Gaps = 17/459 (3%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 +G + F +S D+RS+ P + F A++G H+DGH +I A++KGA VVV+T Sbjct: 13 TLVGGDAEFFC--VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDT---- 66 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +++P + V D + AL +A R + ++ +TGS GKT+ K ML T Sbjct: 67 VQAEIAVPQWVVKDTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCRQAGPT 126 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 A G+ NNHIGVP TL R+ F I E G S GEI +LT L++P +A++ + PAH Sbjct: 127 VATAGNLNNHIGVPQTLMRLEQQA-FAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAH 185 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS---FGKS 253 ++ F ++ IA K +I+ G + D+ E L I S + K+ Sbjct: 186 MAGFGSLDAIAQEKGDIYGGSNLRCAVINLDDNYAQEFLARNGGITTIGFTASPIQYEKN 245 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + ++ L S A Sbjct: 246 SGVDTLIYGECLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAH 305 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +G R + + TLI+++YNANP SM+AA + L+ + Sbjct: 306 ELIAKGVSQFQGVAGRMQRVSTKCCHTLINDTYNANPGSMRAAANYLAHAK-----HSVM 360 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 V+GDM E+G + H DL I +++ G + E L Sbjct: 361 VVGDMGELGSDELAQHFDLGRYAKSQKIKNLFAVGELSKQTVAGFGEG--ATWFEDKVAL 418 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +Q + VV+VK S S +I LL++ Q Sbjct: 419 ASALQQQDLSDAVVLVKGSRSAKMEEVIELLVKNDEVSQ 457 >gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 459 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 209/473 (44%), Gaps = 25/473 (5%) Query: 5 WTFHDLLQAIQGHSI-----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 T + Q ++G I + + G D+R + F + G DGHDFI Sbjct: 4 MTLAHVAQVVKGQLILPEGREALKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGHDFIED 63 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A KGA + + ++S P V+D AL ++A R++ +I + GSVGK Sbjct: 64 AFSKGALASLSERK----LENVSGPYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKEML+ L++ G++NN IG+PLT+ R+ + + E+G+S GE+ L Sbjct: 120 TSTKEMLSSVLATKFNVLKTEGNFNNEIGLPLTICRIKDEHQVAVVEMGISDFGEMHRLG 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P V+T I HL + I AK E+FE + K GT+ LN DD + Sbjct: 180 DIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEHMPKNGTVILNGDDDKL-----IN 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +G + + + + L G+S E G H N L Sbjct: 235 ADTLGLNKIFYGLNGQEVSASDIVAEGMTGTRAVINLFGESFEATIQLPGTHNVMNALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +L + K L GR + T+ID+ YNANP SMKA+I V Sbjct: 295 AAVGKVLGLSNEEIKKGLEKASTIAGRN----NVIEVRDITIIDDCYNANPVSMKASIEV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L GR IAVLGDM E+G+ + H ++ + L +I +V+ G + ++L Sbjct: 351 L----GKAPGRTIAVLGDMGELGDDERQLHYEIGQTLEDNHIGYVFTVGDLSEEINNSLS 406 Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + S H+ ++ + + + GD ++VK+S+ F ++ + F Sbjct: 407 QKNSSCMAHHYTNVEAMLEDLLPIIRGGDTILVKASHFMNFSTVVEAIQTRFE 459 >gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon 107 str. F0167] Length = 466 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 115/467 (24%), Positives = 202/467 (43%), Gaps = 15/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T +L A G I + I IDSR + F I G + D H F+ Sbjct: 8 MNE-TTVKELAAATGGELISGNENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAV 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 G + + + + +I VDD AL L R + ++ +TGSVGKT Sbjct: 67 YNSGCKVAISSKKDIFLKKDFNI--VLVDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TT+EM+ +ALS + K + ++N+ +GVP+TL+R+ D + G+ ELGMS E+ + Sbjct: 125 TTREMVALALSDL-KVFKTPNNFNSQVGVPITLSRI-KDEEIGVIELGMSKFDEMEKIAK 182 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V A++T I AH+ N E I + K I +G+++ +FLN D+ L S Sbjct: 183 IVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADND----LLNNSP 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 F N D + + + ++ + Sbjct: 239 KREGIIYKFFSAKGNKDCEYYASDIVFNNA--MPEFNAHIEGKTLRVHLNVFGEHQISNA 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + +I++ + + + +G T+ID++YNA+P SM + + Sbjct: 297 LAALAVADHYNLSIESAAKHLEDFRGFSHRQELIIRGGLTVIDDTYNASPDSM---KASI 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALP 419 S + R+IA+L DM E+GE ++ H ++ + ++ + V+ G + + Sbjct: 354 SILKGFNAKRKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGELAKEIISNIN 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ E + L FI+ L DGDV ++K SNS + ++ + Sbjct: 414 ENVLTKSFEDNETLENFIREYLKDGDVCLLKGSNSMKLFDVVEKIKN 460 >gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 455 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 211/472 (44%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + +N I DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A LA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M++ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + R Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G++ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + + E+ + + V G + A N ++ + Sbjct: 233 ---VIRFGDYQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420 + + G++IAVL DM E+G S + H L + LS I + G + L Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV + + + + +Q L D +++K SNS G +L+N L+E Sbjct: 403 EGHVQFFQKNQQEDQFEDMGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax ferrireducens T118] gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodoferax ferrireducens T118] Length = 480 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 121/476 (25%), Positives = 202/476 (42%), Gaps = 19/476 (3%) Query: 4 LWTFHDLLQAIQ-GHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 + T + + + + D+R++AP + F A++G H+D HDF+ Sbjct: 1 MMTLQQAASWLGNARLVNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLA 60 Query: 59 HAVQKGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 A +GA V D+ A + ++ +P V D AL +LA R + +IA+T Sbjct: 61 QAKAQGAVAAVCQASDAGDVEAKLRAVGLPGLLVPDTKLALAQLATQWRAQFTLPLIAVT 120 Query: 115 GSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 GS GKTT +M+ L + K G+ NN IGVPLT+ R+ + + ELGM+H Sbjct: 121 GSNGKTTVTQMIAAILRAYKPQAYLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHP 180 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + +P +A++ HL + +E +A + + L G DD++ Sbjct: 181 GEIATLAAIAQPTVALVNNAQREHLEFMATVERVAQENGSVIDALPAHGVAVFPADDTYS 240 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYH 291 L K+ + + S A S +W V +++ G H Sbjct: 241 PLWADKAGSRVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLH 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 +N L + + + LS F P +GR + + TL+D+SYNANP Sbjct: 301 NVKNSLAAVACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPD 360 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 S++AAI VL+ + G R+ VLGDM E+G+ FH + + + ++ G Sbjct: 361 SVRAAIDVLASLP----GPRLLVLGDMGEVGDQGPQFHAEAGQHARALGVESLFTLGELS 416 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + L + + L V+VK S R++ +L + Sbjct: 417 AAAATSFGAG---RHFADNQSLQAAVLAELPRIGSVLVKGSRFMKMERVVEAVLHQ 469 >gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] Length = 454 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 117/445 (26%), Positives = 198/445 (44%), Gaps = 13/445 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + V ++ DSR + P F A G +DGHDF A++ GA VV+N + S+ Sbjct: 22 ETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVLNHPVEGVPEEKSV 81 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 D A+ L R + ++ +TGSVGKTTTK+M A++ T G+ Sbjct: 82 ---ICPDSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTIKTEGNQ 138 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+P T+ R+ + + + E+GMSH GEI L+ RP + +IT I +H+ N Sbjct: 139 NNELGLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIGNLGSQ 198 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I AK EI GL + + LN DD F KA +S G L Sbjct: 199 ENICKAKLEICAGLPEGAPLVLNGDDPFLR--KAVLPDHVRPVWFSLGDENADVCALSIQ 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + S++ + + V +G H N L + L + I L+ F Sbjct: 257 QDEKGMSFVLEDHEEGTFLVKIPAMGRHNVANALAAYCAATRLGLNARRVIAGLADFE-- 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + + ++ +I++ YNANP SM + L+ + RR A+LGDM E+G+ Sbjct: 315 --QTGMRQKVVHARGVDVIEDCYNANPDSM---KAALAMFREYPCKRRFALLGDMLELGD 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLV 442 +S++ H ++ + ++ G + A + + +++T + + Sbjct: 370 ISRAAHEEVGRQAVENKVDYLVTYGEQAKRIAVVAAAKGLPTLHADTYAQAAETLLDKMQ 429 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 GD ++VK+S +++ + +E Sbjct: 430 PGDALLVKASRGMALEKVLEIFYKE 454 >gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 460 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 121/461 (26%), Positives = 216/461 (46%), Gaps = 20/461 (4%) Query: 7 FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKG 64 L + + G + + G+ IDS+ I F I DGHD++ A+ G Sbjct: 12 LKKLEEVVDGEGLQESFHHLEMQGVCIDSKKIKEGNLFVPII--RVKDGHDYVKEAIDNG 69 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + IP+ VDD L AL +LA R +I ITGS GKTT K+ Sbjct: 70 AVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKD 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +++ LS+ + + G++N+ IG+PLT+ M D +F I E+GMS G+IR L+ + +P Sbjct: 128 IISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQP 187 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I +HL EEI+ AK EI +GL++ G + N D E L ++ + + + Sbjct: 188 DVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGLLLYNGD----ETLLSRKNNVLV 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 SFG+ D + ++ +V HG + + + +G Sbjct: 244 LECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKHNILNTIVGIAVGQFY 303 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + R++ + FT+I++++NA+P+SMKAAI L +++ Sbjct: 304 NVPTEKIQDA-----LRQINITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLN 358 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 + + I V+GDM E+G+ ++++H ++ ++L+ NIS+V+ G + + + + Sbjct: 359 AYKKK--IIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYGEMAEIVAEEAMKTYAT 416 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 V + + + DVV++K S ++ Sbjct: 417 GQVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQ 457 >gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0630] Length = 474 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ QA++ + + GI DSR I F ++G + DGH FI A+ Sbjct: 20 LTFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G D+V + +PV V D L A+ KLA + + +IA+TGS GKTTTK Sbjct: 79 GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS TY G+YNN IG+P T+ MP + + I E+GM H EI FL++L + Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N IA AK EI +GL K G++F+ D+ E L K Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + +FG S+ + Q + EQ+ ++ M G + N L+ +GI Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 K L+ + R + + A ++ + YNANP +M + S++ Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 S G+RIAVLGDM E+G S + H +A+ L+ I V+L G + L D L Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P +IH E + L ++ L D+VV+K SN G +I+ LLE+ Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474 >gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] Length = 470 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 21 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 74 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 75 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 132 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 133 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 192 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 193 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 248 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 249 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 301 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 361 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 418 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L ++ +L D +++K SNS G + ++ L + Sbjct: 419 KYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 468 >gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] Length = 450 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L ++ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 464 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 169/443 (38%), Positives = 238/443 (53%), Gaps = 10/443 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+GISID+R+IAP + F A+ DGHDF+ A+ KGAG +V+ + Sbjct: 20 DWQVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR--IPEGVGEDG 76 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + VDDV L L A R R++A ++A+TGSVGKT+TKEML L + +T+A + SY Sbjct: 77 RLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVASY 136 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNH GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+A HL F + Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFDDV 196 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 IA KA I EGLE G LN D + ++L+A A SFG++ D++L Sbjct: 197 AGIAREKAAIMEGLEPGGVAVLNADIAEADILRA---AARGARQLSFGRAAQ-DYRLTGV 252 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + G H A N L L L AD +++ L + P Sbjct: 253 EVADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALGADAGQSLQGLERWTPY 312 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GRG R +L G TL D+SYNANP S+ AA+ V ++ RR+A LGDM E+G Sbjct: 313 KGRGARETISLAGGPVTLFDDSYNANPTSVGAALEV---LAGTPGTRRVAFLGDMKELGP 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 H LA + ++ + V G + AL DALP + ++ET + + + + Sbjct: 370 EELPLHAGLAALPAMERVDQVHCIGPLMRALFDALPEAKRGRWTETGAEMLAELPALVAP 429 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 GD V+VK S S G RL++ L E Sbjct: 430 GDAVLVKGSLSMGLARLVDGLRE 452 >gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri] gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] Length = 459 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 210/470 (44%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +AI I V +S DSR + F ++G DGH ++ A Sbjct: 3 MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +D I + P+ V D L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAVASLWASDH--EITDQTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ ++NN IGVP+TL M + + + E+GM G++ FL+ LV Sbjct: 120 DMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVN 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AH+ F ++IA AK EI GL++ GT+ N D+ L + Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP----LLEERVKDL 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + E +G + N L + + Sbjct: 236 AQRQMRFGRQLSNNLYATSVHDEP-RQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVG 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 IL +AL+ E R + ++ + YN+NP + K + +++ Sbjct: 295 KILHITPAHMKQALAN---VELTENRAEWVKGKNGEQILSDVYNSNPTAAKEVLKTIAET 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 GRRIAVLGDM E+G+ + H LAE + I+ V+L G + LKD L Sbjct: 352 PV--AGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I+ + + + L + ++L D+V++K+S+ ++ L E Sbjct: 410 PAEDIYHYAASDLQQLIADLTTTLTGDDIVLLKASHGIHLEEVLTALKAE 459 >gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] Length = 468 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 111/442 (25%), Positives = 180/442 (40%), Gaps = 11/442 (2%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VASIGSLSIP 84 +SIDSR I FFA+KG DGH+++ A + GA VVN + S+ Sbjct: 31 SVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWR 90 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D + AL +LA R + +I I GS GKTTTKEM L + K + G+ N Sbjct: 91 YLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKEMTAAVLGTTYKVHMSKGNLN 150 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH+GVPLTL + D + E+G++H GE+ LT + RP A++T I HL ++ Sbjct: 151 NHLGVPLTLFGLRDTHDLAVVEMGINHPGEMELLTSIARPDFALLTNIGHEHLEFLGDLD 210 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A A+ ++ G L A+ I+ +G ++ + + Sbjct: 211 GVAEAETVLYHDTIMRGGTVFVNTGDARLLAAARE----IQNRVDYGPERDGNLIWPEKI 266 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 L S V +V A + Sbjct: 267 VLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAVGSCFNVPLNAIAEGLGSLVP 326 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G + + G + +++YNANP S+ A+ + +I GRR+ V DM E+GE+ Sbjct: 327 ADGWKRLEFIEAGGIRIFNDTYNANPDSVTMALKTVCEIP--CSGRRVLVFADMLELGEV 384 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S + H + +++ V+ G H + HY + L +++ L Sbjct: 385 SDAEHRRMGALVAQLPFDAVYTYGEHAALSCLSAGPKCRGHY-TSHAHLLDALKAYLSQD 443 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 D++++K S + L Sbjct: 444 DLLLLKGSRGMRLELIAEGLRA 465 >gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] Length = 474 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 194/472 (41%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL ++ A+ G + P V G + DSR + P F A G DGHD+ Sbjct: 1 MIPL-RLAEVAAAVGGRLVAADPTAAVTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 A++ GA V+ + A +P+ VDD AL +LA A R T+I +TGS G Sbjct: 60 AIRAGAVAVLGTRPVPA------VPMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ S + T A GS+NN +G P T + D + + E G +G IR+L Sbjct: 114 KTSTKDLIAALTSRLGPTVAPPGSFNNELGHPYTALQAGPDTRYLVLEKGARGVGHIRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AH+ F E IA AK E+ L G LN DD + + Sbjct: 174 CDVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVLNADDGLVAAMATR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + +G++ AD + + V G H N L Sbjct: 234 TQA----RVIRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + L R T+ID+SYNANPASM+ A+ Sbjct: 290 AAAAVARELGMPLTELAIVLGEMGLVSTRRMD--VFERIDSVTVIDDSYNANPASMEVAL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ I R +AVLG M E+G H+++ + + + + + G + + Sbjct: 348 RALASIGQR--RRTVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVVGEAAAPIHEG 405 Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ L GDVV+VK S + + + L Sbjct: 406 ATSVRDWGGESVQLTDQADAVEVLRGDLRPGDVVLVKGSR-YRTWEVADALR 456 >gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] Length = 451 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 173/467 (37%), Positives = 243/467 (52%), Gaps = 17/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ DL A G + G+SIDSR+ AP E F A+ DGHDF+ A Sbjct: 1 MSGLWSARDLAVATNGTWLRGEADA--TGVSIDSRTTAPGELFVALADAR-DGHDFVPDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA V+V D+ A P V+DV AL +L R RS+A ++A+TGSVGK+ Sbjct: 58 EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS+ T+A S+NNHIGVPLTLAR+P + DF + E+GM+H GEI L+ Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+ VIT I AHL +E IA KAE+ G+ G L F L + Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLP-RGPFLSRLARR-- 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + SFG A+ +L + + ++ + + + G HMA N + L Sbjct: 229 ARDGVRVVSFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D A AL F P GRG R R ++ TL+DESYNA+ S++AA+ VL Sbjct: 289 AAAAALGLDPVQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + GRRIAVLGDM E+G+ + H DLA+ V+ G H+ + D LP Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLAD-AVSGVADLVFACGPHMRVMFDELPE 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L ++++L GDVV+VK S ++ + ++ Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGSYGSRMRDVVAAIEDK 450 >gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] Length = 457 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 133/449 (29%), Positives = 204/449 (45%), Gaps = 23/449 (5%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I ++ ++GI+ DSR I P E F A++G +DGHDF AV KGA ++V+ + Sbjct: 22 IDVIDDFLIDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAIALIVDHHISVKS 81 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + IP V D L A ++A R + +IAITGSVGKTTTKE+++ LS+ + Sbjct: 82 -TKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVHK 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +YNN IGVP TL + D+ + E+GM L EI L+ + RP I +IT + AH+ Sbjct: 141 TKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIG 200 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 E IA AK E+ + T N+D+S K + G Sbjct: 201 RLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLLVQTAKKVWKGETISYGLEGGD----- 255 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + L+ + M+ G H A N L + + L D + ++ +S Sbjct: 256 -------ITGELLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKCLKLDCNVLMQGIS 308 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 R R G L+DE+YNA SMKAA+ +L +I +A+LG M Sbjct: 309 ----VNLPKGRSRRYQLSGDILLLDETYNAGLESMKAALELLKEIPGQR---HLAILGTM 361 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLF 436 E+GE S H ++ E I H+ + +A+ D + T + L Sbjct: 362 KELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADGAL-GMVTECLPTQEELIKR 420 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + GD ++ K+SNS G R++ Sbjct: 421 LTEIVQPGDRLLFKASNSVGLNRVVEAFR 449 >gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 459 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 210/470 (44%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +AI I V +S DSR + F ++G DGH ++ A Sbjct: 3 MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +D I + P+ V D L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAVASLWASDH--EITDQTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ ++NN IGVP+TL M + + + E+GM G++ FL+ LV Sbjct: 120 DMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVN 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AH+ F ++IA AK EI GL++ GT+ N D+ L + Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP----LLEERVKDL 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + E +G + N L + + Sbjct: 236 AQRQMRFGRQLSNNLYATSVHDEP-RQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVG 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 IL +AL+ E R + ++ + YN+NP + K + +++ Sbjct: 295 KILHITPAHMKQALAN---VELTENRAEWVKGKNGEQILSDVYNSNPTAAKEVLKTIAET 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 GRRIAVLGDM E+G+ + H LAE + I+ V+L G + LKD L Sbjct: 352 PV--AGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 IH + + + L + ++L D+V++K+S+ ++ L E Sbjct: 410 PAEDIHHYAASDLQQLIADLTATLTGEDIVLLKASHGIHLEEVLTALKAE 459 >gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] Length = 457 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 205/473 (43%), Gaps = 29/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A Sbjct: 3 LTLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ A VDD L A KLA ++ +IA+TGS GKTTTK Sbjct: 62 GALATFTEKELPA-----DQAHILVDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLDVVR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +L + + + +V G + A N ++ + Sbjct: 237 ----------FGDGAELTVSELTEFKDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVA 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + AL+ + R + + A ++ + YNANP +MK + S I Sbjct: 287 KHLGVTEENILTALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 343 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 344 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFP 403 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 404 LGHVYYFKKIADEDQFDAMVKHIKESLGEHDQILLKGSNSMNLAKVVEELQAK 456 >gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinobacter aquaeolei VT8] gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Marinobacter aquaeolei VT8] Length = 465 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 216/471 (45%), Gaps = 18/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M ++ + + +Q G + + +G+S D+RS+ + F A++G +DGH+F+ Sbjct: 1 MMRAFSLAEAREWLQATLAGARTDAGELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFL 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+++GA VV+T++ ++IP V D + AL LA R S A ++AITGS Sbjct: 61 GQALKQGAVAAVVDTEIT----DVAIPQLVVSDTVQALADLASGNRSESAARLVAITGSS 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTT +EM L+ + T G+ NNHIGVPLTL R+ D FG ELG S LGEI Sbjct: 117 GKTTVREMTGAILAGMGPTLVTEGNLNNHIGVPLTLFRLTPDHQFGAIELGASGLGEIAH 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + RP +A++T AHL F + I AK EI +G+ G + LN DD F+ A Sbjct: 177 TVSITRPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVPADGAVVLNRDDPAFDQWHA 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ + + G ++ + +V G H N L Sbjct: 237 RAGQRRVLGVSRMGHPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNAL 296 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L L A L +GR + + A + TLID+SYNANPASMKAA+ Sbjct: 297 LALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASD---LTLIDDSYNANPASMKAAL 353 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ R+AVLG M E+G+ ++ H + E I+ + + Sbjct: 354 DVLASYPA----PRLAVLGAMAELGDEAEELHRQVGEHARARGINKLMVV--GAGGNGYG 407 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLEE 467 + + + I + +G V+VK S S R+ + ++ Sbjct: 408 TGFGDETEFFPSHEQAVNAIVAD-RNGAMTVLVKGSRSSAMDRVAEGIQKK 457 >gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 460 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 128/447 (28%), Positives = 203/447 (45%), Gaps = 13/447 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ DSR + P F A G +DGHDF A+++GA VVVN + + Sbjct: 22 DPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNHPVPGVPEEKA- 80 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 D A+ + R + ++ +TGSVGKTTTK+M ALS +T G+ Sbjct: 81 --ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALSGFGETIKTEGNQ 138 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+P TL R+ ++ + E+GMSH GEI L RP + +IT I +H+ N Sbjct: 139 NNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGSQ 198 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I AK EI GL + + LNYDD F KA A +S L Sbjct: 199 ENICKAKLEICNGLPEGAPLVLNYDDPFLR--KAALPAHVRPVWFSLSDENADVCALSIR 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 ++ S++ + + V +G H N L + L D I+ LS F Sbjct: 257 QETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAKRVIRGLSNFE-- 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R + ++ T+I++ YNANP SM + L+ RR A+LGDM E+GE Sbjct: 315 --QTGRRQKVVDSEGVTVIEDCYNANPDSM---KAALAMFKDFPCKRRFALLGDMLELGE 369 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLV 442 LS+ H +L + + + + G A + + ++++ + S + Sbjct: 370 LSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGVETLHADSYREAADALLSRVQ 429 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469 GD ++VK+S+ +++++ EE Sbjct: 430 PGDAILVKASHGMALEKVLDIFYEEHK 456 >gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] Length = 452 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 210/471 (44%), Gaps = 23/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + + G IG + +S D+R+I P F A+ G +D HDF +A Sbjct: 1 MINMM-LSQLAEYLDGQLIGQ--DVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFASNA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA ++V+ + S P VDD AL K+ + +AITGS GKT Sbjct: 58 VEAGASALLVSKAL-----DCSTPQLLVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ + + + G++NN IGVPLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL+ +N D E + Sbjct: 173 LVQPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLKPGSVAIVNLDSHGGEYW-QQVL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A +S F + ++ E+ + + V IG H N L Sbjct: 232 ADKRVVHFSVSDDSADFFARNITMSTAGEASFELVSRQGTFSVELGIIGQHNVANALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L A ++ L +GR TLID+SYNA+ +M Sbjct: 292 ALAFELGATIEMVQSGLKHLAKVKGR---VESVSLTDKITLIDDSYNASVPAM----KAA 344 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R +LG+M E+G+ S + H + E + + HV G A+ + Sbjct: 345 ADLLSSFGGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTFGADAKAISE---- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEEF 468 + +T + + FI+ L + ++VK +NS G ++ L E + Sbjct: 401 QCQGKHFDTHESMIEFIKQQLANHNGAQTLLVKGANSAGMSKIAAALKEMY 451 >gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea] gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] Length = 455 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 147/466 (31%), Positives = 223/466 (47%), Gaps = 21/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + Q + +G +S DSR+I Q F A+KG +DGH+F A Sbjct: 1 MIPL-NLSGICQRLNARLVG--ADVEFCHVSSDSRAIPEQTLFVALKGDKFDGHNFANTA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA ++V+ ++ L+I V D A+ +L + + +A+TGS GKT Sbjct: 58 VENGAIALLVDHEL-----PLNITQVIVKDTQRAMGELGAYLKELIQPRSVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS K G++NN IGVPLTL R+ D +FG+FELG +H GEI + + Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHKGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F +E +ASAK+EIF L TGT +N DD F ++ A Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLEGVASAKSEIFNHLTPTGTAIINADDGFASVMLA--- 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A T +FG AD Q + ++ +++ + G H N L Sbjct: 230 ASTDYTQLTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIALPLPGRHQVSNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I +D S+ P +GR + G +ID+SYNANPAS+ AA+ Sbjct: 290 TAICLSFGLTLDEIKLGFSLLVPVKGRMLPTQ----LGRVRVIDDSYNANPASVTAAVDW 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +I EG R VLGD+ E+G+ + H +L E+ + + G A Sbjct: 346 LHEI----EGHRCLVLGDLGELGDNAPLLHTELGELARQKGLDSLLTLGELSANASSAFG 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ ++ L I+ L V+VK S S R++ L+ Sbjct: 402 VDGYISLELLLEDLIKNIKQ-LQGNVTVLVKGSRSARMERVVEALI 446 >gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] Length = 450 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 207/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S S H ++E + + ++L G + ALK+ L + Sbjct: 341 KNL--LTKGRRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L I+ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] Length = 450 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L I+ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLAATDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] Length = 509 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 148/514 (28%), Positives = 243/514 (47%), Gaps = 58/514 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A+KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122 A +V+ S P+ V D L AL+ +A A +IA+TGSVGKTTT Sbjct: 64 AVAAIVSEGKYK-----SFPLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+ML LS ++A G+ NN+IG+PLT+ + P + + I E+GM+ +GEI+ L+ + Sbjct: 119 KDMLHTVLSQYGVSHASEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKIS 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P+IAVIT I PAH NFS + ++A AK EI G++ GT+ L+ D+ +++ L + ++ Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRN 238 Query: 243 ----------------------------------------------GIKTIYSFGKSKNA 256 + K Sbjct: 239 VISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIP 298 Query: 257 DFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 + + + + S + + G H A ++L +V L D+ Sbjct: 299 ASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLP 358 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL F +GRG ++ N+ + LID+SYNA+PASMK AI LS S + +A+ Sbjct: 359 LALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRK---VAL 415 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+G+ S FH DL ++++ NI V+ G +L L + LP +I + + L Sbjct: 416 LGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLK 475 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + + D ++VK S ++ + ++ Sbjct: 476 SDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 509 >gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] Length = 447 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 122/445 (27%), Positives = 202/445 (45%), Gaps = 15/445 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ D+R I + F G DGH+F+ A + GA D+ + Sbjct: 13 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDV--PNPPMDF 70 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 PV V+D L AL +LA + K +IAITGS GKTTTK+++ + + K + G++ Sbjct: 71 PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 130 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH+ Sbjct: 131 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 EEIA AK EI G E L + G +FGKS+ A+ + Sbjct: 191 EEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAAEIYPLEI 245 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + +E + + +E+ IG H N + + + + + AL Sbjct: 246 RAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNME-- 302 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + +++++YN++P ++K + + G+ + VL DM E+G+ Sbjct: 303 -RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLADMLELGD 360 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSS 440 LS H + AEVL I ++L G + A + +A VH+ T + L + S Sbjct: 361 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 420 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 421 MNGNEWILVKGSYGMGLKDVVENLI 445 >gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315] gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1] gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315] gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1] Length = 455 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 212/472 (44%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + + ++ I DSR I + F +KG +GH+FI A Q Sbjct: 3 LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-NGHEFIDLAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ P V+D L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + R Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T + AHL F ++IA K +I +G++ G + D L Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG + + E+ + + V G + A N ++ + Sbjct: 233 ---VIRFGDHQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R ++ + YNANP +M+ + + I Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420 + + G++IAVL DM E+G S + H L + LS I + G + L Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV + + + + +Q L D +++K SNS G +L+N L+E Sbjct: 403 EGHVQFFQKNQQEDQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454 >gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Mississippi] Length = 456 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 149/455 (32%), Positives = 230/455 (50%), Gaps = 7/455 (1%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 A++G +G + ISID+R++ P + F AIKG ++DGH F+ A KGA VV+ Sbjct: 3 AAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD 61 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 V + P+ V D L AL+ +A ++A +IAITGS GKTTTK +L+ ALS Sbjct: 62 EVSVPTADCG--PLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALS 119 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 K Y +YNN IG+PL A + D +F + E+GM+ GE+ L+ + RP +AVIT Sbjct: 120 KYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITN 179 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + PAHL F +E + +AK E+F ++ LN+D ++ ++A + + I SFG Sbjct: 180 VGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYCA-RIISFG 238 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 AD Q+ + ++ S + + + + + + D+ Sbjct: 239 VGAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAA--VGRAFSIDLT 296 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 A A+ F P EG + L+D++YNANP SM AAI LS ++ RR Sbjct: 297 QARGAMEEFVPLEGSKVHVTTFKGREI-VLLDDAYNANPLSMVAAIENLSNLNHARVLRR 355 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 +A+LGDM E+G S +H L E + NI V+ G H+LAL D LP+ + + Sbjct: 356 VAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLRGGHFADHG 415 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ + GD V+VK S + ++ LLE Sbjct: 416 EALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 450 >gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] Length = 450 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 206/470 (43%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSEC---SELTKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPSDEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L ++ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magneticum AMB-1] gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magneticum AMB-1] Length = 470 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 192/467 (41%), Positives = 266/467 (56%), Gaps = 5/467 (1%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT ++ A+ G G G+SIDSRSI P + F A++GP++DGHD + Sbjct: 1 MIRPLWTSAEVAAAVAGTPSGAA--WEAQGVSIDSRSIEPGDLFIALEGPNHDGHDHVAS 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA +V+ + + P+ V D + AL L +A+R RS A I+A+TGSVGK Sbjct: 59 ALANGAAAALVHK--LPRGTAEDAPLVLVKDTMTALQDLGIASRARSTARIVAVTGSVGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKEML +ALS T+ +GS+NNH GVPL+LARMP V + IFE+GM+H GEI L Sbjct: 117 TGTKEMLALALSDQGATHYSVGSFNNHWGVPLSLARMPTAVQYAIFEIGMNHPGEITPLV 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+AVITT+ H+ F+ EIA+AKAEIF+G+E GT L D++ F L + Sbjct: 177 RMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGVETGGTAVLPRDNAHFAYLNDAA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+K I SFG A +L + + + + + + G A N L Sbjct: 237 RTAGLKDIRSFGNHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAV 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L ADV+ A AL+ +GRG+R R + G F LIDESYNA+P SMKAAI++ Sbjct: 297 LLAVEALGADVNLAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAM 356 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + P GRRIAVLGDM E+G S H +AE + +NI V+ +G L DAL Sbjct: 357 LASVRPAKGGRRIAVLGDMLELGPQGPSLHASVAETVESWNIDLVFTAGTLTAHLHDALA 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ D + +++ + GDVV+VK S R++N L E Sbjct: 417 APRRGGHAADSDAVAALVKAGVRPGDVVMVKGSAGSRMGRVVNALAE 463 >gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 459 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 205/477 (42%), Gaps = 29/477 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + + +G V +S DSR + FFA+KG ++D H ++ A Sbjct: 1 MITL-SLSQIAAILGAELMGDGT-VIVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++G VV +I V D AL +LA R + ++A+TGS GKT Sbjct: 59 AEQGCVAAVVEHPTEG-----NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKT 113 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM+ + G++NN IGVPLTL R+ F + ELG +H+GEI Sbjct: 114 TVKEMVASILQQSAVDSDDVLFTQGNFNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T L +P +A++ + AHL F ++ +A+AK EIF GL + G +N ++ + + Sbjct: 174 YTTSLAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTENGVAIINLAHNYQQKWQ 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A Y + ADF + + ++ + +++ +G H N Sbjct: 234 A--DIGRHAVQYFAYDNPRADFYAEQIHFSEQGAYFLLHTPQGRVQINSPYLGEHNISNA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A K L +GR + N L+D++YNAN SMK+A Sbjct: 292 LAATALAMNVGATTAQVKKGLETPSLVKGRLFPIQPCEN---LLLLDDTYNANVGSMKSA 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ISVL + R+ V+GDM E+G+ +Q H ++ E + V G + Sbjct: 349 ISVLQKYPA----FRVFVVGDMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISA 404 Query: 417 ALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + L ++ Q VV+VK S S +I+LL F Sbjct: 405 V----NSGRHFTDKTELVTYLTPIIQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 457 >gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 479 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 206/473 (43%), Gaps = 29/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A + Sbjct: 25 LTLHEIAKIVGSKNDVAAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFEN 83 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA D+ A VDD L A KLA ++ +IA+TGS GKTTTK Sbjct: 84 GALATFTEKDLPA-----DQAHILVDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTK 138 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 139 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 198 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 199 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLEVVR 258 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +L + + + +V G + A N ++ + Sbjct: 259 ----------FGDGAELTVSELTEFKDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVA 308 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + AL+ + R + + A ++ + YNANP +MK + S I Sbjct: 309 KHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 365 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 366 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQIFP 425 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 426 LGHVYYFKKTADEDQFDAMVKHIKESLGEHDQILLKGSNSMNLAKVVEELQAK 478 >gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] Length = 460 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 123/441 (27%), Positives = 198/441 (44%), Gaps = 14/441 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + DSR+I P F A+KG +DGH F+ A++ GA VV+ Sbjct: 22 EFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVSEVPEGVAAD---RC 78 Query: 86 FGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L A ++A R + T+IAITGS GKT+TK+ + L + ++N Sbjct: 79 VVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGERYRVIKTQANFN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+P TL + D + + E+GM LG+IR + H+ P AVIT + HL +E Sbjct: 139 NEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSLE 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AK+EI E FLN DD ++ ++++G +AD + + Sbjct: 199 NIAKAKSEILEDFTPKNHAFLNGDDPRVSVM------ETGAAVHTYGIDSDADVKAVEIS 252 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ + + M + V A A + + Sbjct: 253 ADGLRTVFTYRSRITGATQKVQLPLIGRHNVMNALAAVAVGEVYGVPDAAIARGLENL-- 310 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383 + L+ G T+I+++YNA+PASM+AA+ L + G+GR IAVL DM E+G Sbjct: 311 KMTGMRQEILHFGPVTVINDAYNASPASMEAALRTLGDVVKSQGKGRAIAVLADMLELGA 370 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 SQS H + S Y ++ + G + +A + + VHY++ + + Sbjct: 371 HSQSGHAQVGTWCSQYGVTELVCYGPESRFMAEAAQKAGVPVHYAQDRGEAARVLARLVR 430 Query: 443 DGDVVVVKSSNSCGFYRLINL 463 DVV++K S+ ++LI+ Sbjct: 431 PDDVVLLKGSHGMEVFKLIDE 451 >gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 456 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 218/464 (46%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ + + + DSR I F + + DGH ++ A+ GA Sbjct: 5 LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D +I SI V V D L AL +L ++ ++AITGS GKTTTK+M Sbjct: 64 ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L++ + ++NN IGVP+T+ M + + + E+GM G++ FL+ L P + Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F + IA AK EI GL++ G + +N D+ L + Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +FG N D + + ++ +V ++ + IG + N L L + +I Sbjct: 239 VLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 VD KAL+ F R + ++ + YN+NP ++K + Q+ Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423 EG+RI VLGDM E+GE + H +LA+ ++ I V+L G + L + L Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHNNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQ 412 Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H+ + + L +++ L+ D+V++K+S+ +++ L+ Sbjct: 413 IHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI 456 >gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] Length = 450 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFELSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L ++ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQTLESTDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] Length = 463 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 208/471 (44%), Gaps = 19/471 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T ++L+ +G G V + DSR I P + F A+ G DGHDF+ A Sbjct: 1 MLTLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA +V+ V + P+ V D + L LA R ++ ITGS+GK++T Sbjct: 61 RGAVAALVDRAHVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSST 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTHL 181 KE++ S + S+NN IG+PL+L + D + + E+ G GEI L + Sbjct: 121 KEVVWSVASQRFRAIRSQRSFNNEIGLPLSLMEIGSDTEVVVLEIGGAYAPGEISRLAEI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP I V+T ++ +HL+ +E IA+ KAE+ L + G LN DD L+ K Sbjct: 181 ARPTIGVVTNVSHSHLARMGSLEAIAATKAELPASLPEDGVAVLNGDDLRVRLMADKCR- 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +G + + + + + + ++ + G V +G H +L + Sbjct: 240 ---CRVIRYGLAPDCEVRAENVESHGLDGISFDLLVDGGRHHVHVPLLGQHSVHTVLAGV 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L V+ + L + G TLID++YNANP S AA+++L Sbjct: 297 SVGLALGMSVEETLPGLRDPSIQLRLL----VVPAIGGATLIDDTYNANPTSSLAALNLL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ RIA GDM E+G + H + + + + ++ G + D Sbjct: 353 AELPARR---RIAAFGDMLELGSYEEEGHRIVGKRAAAV-VDRLFTMGPRARIIADEAVA 408 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 S V +T L ++ ++ +GDVV+VK S ++ L + Sbjct: 409 SGLAPDAVVAVDTKQDLIDALKETMREGDVVLVKGSRGIQLEHVVAALRDR 459 >gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 204/464 (43%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV VD+ L +L +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L S+ G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LSNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIHAEAEGTSFVTNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R + +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKKME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421 G+ + VL DM E+GELS H + AEVL I V+L G + A + Sbjct: 366 SKGK-PKYLVLADMLELGELSTKLHRESAEVLEKDTIEKVFLYGEAMKAFGTVAETKIGQ 424 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + +T + L + S + + ++VK S G ++ L+ Sbjct: 425 GKVQHFDTKESLETALLSEVNGNEWILVKGSYGMGLKDVVENLI 468 >gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 460 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 126/448 (28%), Positives = 201/448 (44%), Gaps = 13/448 (2%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + V ++ DSR + P F A G +DGHDF A++ GA VVVN + + Sbjct: 21 EEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVNHPVEGVPAEKA 80 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 D A+ + R + ++ +TGSVGKTTTK+M AL+ +T G+ Sbjct: 81 ---ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALAGFGETIKTEGN 137 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +G+P TL R+ + ++ + E+GMSH GEI L RP + +IT I +H+ N Sbjct: 138 QNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGS 197 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E I AK EI GL + + LNYDD F AK A +S L Sbjct: 198 QENICKAKLEICNGLPEGAPLVLNYDDKFLR--AAKLPAHVKPVWFSLADENADVCALSI 255 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 ++ S++ + + V +G H N L + L D IK LS F Sbjct: 256 RQEEDGMSFVLEDQEEGTFVVKIPAMGKHNVANALAAYCAATRLGCDPRGVIKGLSNFE- 314 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 + R + ++ T+I++ YNANP SM + L+ RR A+LGDM E+G Sbjct: 315 ---QTGRRQKVVHSKGVTVIEDCYNANPDSM---KAALAMFKEFPCKRRFALLGDMLELG 368 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSL 441 ELS+ H +L + + ++ + G + A + + ++ + + + Sbjct: 369 ELSREAHEELGRLAAESDLYCLVTYGENAKRTAVVAAAKGVKTLHANNYREAADALLNRI 428 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFP 469 GD ++VK+S +++ + E Sbjct: 429 EPGDALLVKASRGMALEKVLEIFYAEQK 456 >gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] Length = 483 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 142/469 (30%), Positives = 224/469 (47%), Gaps = 21/469 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + GH I +S D+R I + + A++G +DG DF A++ Sbjct: 1 MMLLAQAAKVLHGH-IKGPTDARFMAVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIES 59 Query: 64 GAGLVVVNTDMVAS---IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA V++N D + I + + V D AL +LA R + ++AITGS GKT Sbjct: 60 GATAVLMNADSFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKT 119 Query: 121 TTKEMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEML L S + G++NN IG+PLTL ++ + + E+GM+H GEI Sbjct: 120 TVKEMLASVLRSAAGSDDAVLATKGNFNNDIGMPLTLLQLNAQHRYAVIEMGMNHPGEID 179 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +LT + P++A+I + AHL +E +A AK EIF GL+ G+ +N DD F L + Sbjct: 180 YLTRIACPNVALINNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGSAIINADDEFAPLWR 239 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 G ++ FG S ++D + W+ ++V+ V G H A+N Sbjct: 240 ---CLAGANSLLEFGLSGHSD-VVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNA 295 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L +++ + LS F GR + + LID++YNANPAS+KAA Sbjct: 296 LAVTAAAIALNLSLESIVAGLSKFSGVAGR---LQRKPAREGAVLIDDTYNANPASLKAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I+VL+ +S G+R+ VLGDM E+GE + +FH + + I +++ G Sbjct: 353 IAVLAAMS----GQRVLVLGDMGELGEDTAAFHAGIGINVRESGIENLYALGELSREAVR 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + E +D L + L G V+VK S R++ L Sbjct: 409 EF--GVGALHFEHIDALLAELDKELKVGTTVLVKGSRFMKMERVVKHLE 455 >gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] Length = 457 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 204/471 (43%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ +A G G G+ IDSR + F AI G + + H FI Sbjct: 1 MKNL-TLENIAKACHGTYHGDESKKSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFIP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++KGA VV + D +G P V+ AL +A R T++ ITGSVG Sbjct: 60 DTIEKGALCVVSHED----LGDTDFPYILVESTGQALLDIAKLYRDSFDVTVVGITGSVG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TKEM+ +S K + +G++NN G+P+T+ M + I E+G++H GE+R L Sbjct: 116 KTSTKEMIASVVSQKYKVHKTLGNFNNEWGLPITIFEMDESHEVVILEMGVNHFGEMRRL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + P I VIT I AHL F E I K+++ + ++ G+I LN DD L +K Sbjct: 176 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDD----LLSK 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T FG +++ + + + L + Sbjct: 232 MGPVKGVTPVLFGTNEDCQCYASGIVPMGLKGTACTIHLPDGEAFDCLIPTPGAHMVSNA 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V IKA ++ G ++D+ YNANP S KAAI Sbjct: 292 LAGAAVGAALGLTADEIKAGIE---AHTTLPGRNNIISTGSLMILDDCYNANPVSTKAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL GR++AVLG+M E+G + H ++ E + + I V G + ++ Sbjct: 349 DVLDMAI----GRKVAVLGNMGELGNNEKELHREVGEYAAKHGIDVVCGIGDLAKEITES 404 Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + H+ + + +GD V+VK+S+ F ++ L + Sbjct: 405 AAKGASTETHWFAAKQDFLAEMHHIIKEGDNVLVKASHGMQFPEIVEQLKK 455 >gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida BIRD-1] Length = 455 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 210/464 (45%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L A++G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 1 MLKPLSLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVEREVAG----VDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G ++I AK EI EGL + G LN DD F++ KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + G K + + G+++ V + +G H N L Sbjct: 235 AHKVVSFAR-GNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ P +GR + +ID+SYNANP SM AAI +L Sbjct: 294 AAAHAVGLSLSGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPTSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMAHAVKAFGA 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L + + +++K S S ++ L Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447 >gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20] gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd KW20] Length = 457 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 214/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + S+S+P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ + S+ S + +E+ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL RI +GDM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKGYDA----FRILCVGDMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] Length = 467 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 16/468 (3%) Query: 6 TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63 T + G G + V G+ DSR Q F + G +DGH+++ + Sbjct: 4 TIGQIASMCGGILHGETDAEQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + + A + V+D L AL LA A + +++ ITGS GKTTTK Sbjct: 64 SAAAFLWQKNHGAPPSENA---IEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ L + K + G+YNNHIG+PLT+ MP D D I E+GMS GEIR L ++ + Sbjct: 121 DIVNALLGTTFKVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQ 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT I +HL EIA AK EI GL+ G + N D+ + A+S + Sbjct: 181 PDVAIITNIGESHLLQLGSRAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVK 240 Query: 244 IK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +++FG + D + E S + Q +G H N L L Sbjct: 241 PEGLKLFTFGLATGNDDYPTEITSDGEGSL-FITAQSGKEAFRLPLLGQHNVVNGLAALA 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D D K LS + G R T+++++YNA+PASMKAAI LS Sbjct: 300 VARHFNVDADHIRKGLS---SLKLTGMRIEVVNCPNGLTVLNDAYNASPASMKAAIQTLS 356 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 +GR++AVLGDM E+G + FH ++ + +++ ++ G ++ Sbjct: 357 AY--KTDGRKVAVLGDMLELGPEEKQFHEEIGIFAAKHDVEVLFTYGALGTSIAQGAQGL 414 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +VH L +Q L D+V+VK+S +++ L Sbjct: 415 MPTANVHAYTDKQELIQHLQVYLHANDIVLVKASRGMRLEEIVDALKN 462 >gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 130/478 (27%), Positives = 211/478 (44%), Gaps = 31/478 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59 M L + L + +G + V +S DSR I+ FFA+KG H+D H ++ Sbjct: 1 MITL-SLSQLASILDAQLLG-DGELTVENVSTDSRQSISKG-LFFALKGEHFDAHHYLDK 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV++G VV + I V D AL +LA R + +A+TGS GK Sbjct: 58 AVEQGCIAAVVERQT-----NSPIAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSSGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 TT KEM L + + + N IGVPLTL R+ F + ELG +H+GEI Sbjct: 113 TTIKEMTAAILQQSAVDFDDVLFTHGNFNNDIGVPLTLLRLTEQHKFAVIELGANHIGEI 172 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + T L +P +A++ +A AHL F ++ +A+AK EI+ GL GT +N ++ + Sbjct: 173 AYTTALAQPDVALVNNVAAAHLEGFGSLDGVATAKGEIYRGLTSNGTAIINLAHNYQQKW 232 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 +A+ ++ + AD+ + + + S+++ +G H N Sbjct: 233 QAEIADHSVQYFAY--DNPKADYYAENIVFSEQGASFLLHTPKGSIQIHSSYLGEHNVSN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + A + L++ +GR N L+D++YNAN SMK+ Sbjct: 291 ALAATALAMNVGASLQDVQNGLAMKSQVKGRLFPIEPCEN---LLLLDDTYNANVDSMKS 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AISVL + R+ V+GDM E+G+ +Q H ++A+ + V G + Sbjct: 348 AISVLQKYPA----FRVFVVGDMAELGDNTQLCHQEVADFAHAAKLDLVLSCGNASEVIS 403 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + L ++ S + VV+VK S S +I+LL + F Sbjct: 404 AV----NSGKHFTDKTELASYLISVIKQQLTEQKVVVLVKGSRSMKMENVIDLLKDSF 457 >gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution Length = 452 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 206/463 (44%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + G G ++ ++ D+R + P F A+KG +D HDF A GA Sbjct: 5 TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D A +LA R + A ++A+TGS GKT+ KE Sbjct: 63 GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEX 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 LS T G+ NN IGVP TL R+ + D+ + ELG +H GEI + L RP Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL + G N D++ + ++ + + Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIXNADNNDWLNWQSVIGSRKVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + N+DF S + +Q S++V+ G H N L + Sbjct: 238 R--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSXS 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A +D L+ GR + A N L+D+SYNAN S AA+ VL+ Sbjct: 296 VGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSXTAAVQVLA---- 348 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GD E+G S++ H+ + E I V G A+ A S Sbjct: 349 EXPGYRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVGE 405 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + L ++ + + V ++VK S S ++ L E Sbjct: 406 HFADKTALITRLKLLIAEQQVITILVKGSRSAAXEEVVRALQE 448 >gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 475 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 20/473 (4%) Query: 1 MNP--LWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQEAFFAIKGPHY 51 M LWT +LL A GH G+SID+R++A + F A+ G + Sbjct: 1 MTAPILWTGTELLTATGGHFRASPHPGAASCEGLRATGVSIDTRTLAAGDIFVALVGENS 60 Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 DGH I A+ GA +V+ + D G + VDD L ALN +A AR R +I Sbjct: 61 DGHAHITRALDAGAAVVIAHRD----PGVEDARILLVDDTLSALNAMAAFARTRFAGRMI 116 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 A+TGSVGKTTTK+ML AL + T+ + SYNNH GVPLTLAR+P F + E+GM++ Sbjct: 117 AVTGSVGKTTTKDMLRHALGACGPTHWAVASYNNHWGVPLTLARLPASAMFCVCEVGMNN 176 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GEI L +VRP +AVITTI AHL + +E IA K+++ L + G + D + Sbjct: 177 PGEIAPLAQMVRPDVAVITTITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTG 236 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + ++ G +++ G + ++ +++ + + G S V H G H Sbjct: 237 MAIFATQARNHGA-RLWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRH 295 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 MA N L+ L + AD+ A++ L+ F P GRG Q +L+DESYNA+ A Sbjct: 296 MAGNALVALTAAYAVGADMACAVRGLADFRPGAGRGAITPILHGQA--SLLDESYNASVA 353 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 S++A + VL Q+ RIAVLGDM E+G ++ H L + + V+ G ++ Sbjct: 354 SIRATLDVLGQVPARR---RIAVLGDMLELGAFARDQHESLLPDVRE-HADLVFCCGPNM 409 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L D LP S ++ L +++++ GD ++VK S ++++ L Sbjct: 410 KYLFDLLPPSRRGAWAPDAATLAPQVRAAMRAGDAILVKGSLGLKMRQVVDAL 462 >gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] Length = 456 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 217/464 (46%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ + + + DSR I F + + DGH ++ A+ GA Sbjct: 5 LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D +I SI V V D L AL +L ++ ++AITGS GKTTTK+M Sbjct: 64 ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L++ + ++NN IGVP+T+ M + + + E+GM G++ FL+ L P + Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F + IA AK EI GL++ G + +N D+ L + Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +FG N D + ++ +V ++ + IG + N L L + +I Sbjct: 239 VLTFGSLDNNDMCAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 VD KAL+ F R + ++ + YN+NP ++K + Q+ Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423 EG+RI VLGDM E+GE + H +LA+ ++ I V+L G + L + L Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHSNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQ 412 Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H+ + + L +++ L+ D+V++K+S+ +++ L+ Sbjct: 413 IHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI 456 >gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius CECT 5713] Length = 456 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 218/464 (46%), Gaps = 17/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A+ + + + DSR I F + + DGH ++ A+ GA Sbjct: 5 LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D +I SI V V D L AL +L ++ ++AITGS GKTTTK+M Sbjct: 64 ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L++ + ++NN IGVP+T+ M + + + E+GM G++ FL+ L P + Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ F + IA AK EI GL++ G + +N D+ L + Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + +FG N D + + ++ +V ++ + IG + N L L + +I Sbjct: 239 VLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 VD KAL+ F R + ++ + YN+NP ++K + Q+ Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423 EG+RI VLGDM E+GE + H DLA+ ++ I V+L G + L + L Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIGSVYLCGELMGYLAEKLREKFDETQ 412 Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H+ + + L +++ L+ D+V++K+S+ +++ L+ Sbjct: 413 IHHYQKDDLLTLTSDLKNELMPDDIVLLKASHGIHLENVVSELI 456 >gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 463 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 216/473 (45%), Gaps = 17/473 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + H ++ +G I + VN IS D+R + + F + G +DGH FIL A Sbjct: 1 MIPI-SIHKIITVCKGKMILEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +++GA +V +G L V V+D L AL ++ R S I +TGS GK Sbjct: 60 MERGAIGALVQKGQEFPLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ L + G+ NN IG+PLTL + + G+ E+GM+ LGEI L Sbjct: 120 TTTKDMIAGILETNFNVLKNEGNLNNQIGLPLTLFNLEPCHEIGVLEMGMNSLGEILSLA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+PHIAVIT + +H+ + E I +AK EI L + + +N DD F + +K + Sbjct: 180 KTVQPHIAVITNVGFSHIEHLGSQENILTAKMEITTRLREKDYLLINGDDPFLKTVKEE- 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 I +FG + D E +V +Q K G H N L+ Sbjct: 239 --SKTYRIITFGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLV 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + K + R + G +I+++YNA+P SM + Sbjct: 297 ALWVGLHYQMTPLAIQKGFDRLELSKMRL----EIVTYGDVKVINDAYNASPDSM---KA 349 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DA 417 ++ ++ R+IA+LGD+ EMG ++ H + ++ + ++ G + +A Sbjct: 350 AITVLNQSTGIRKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITVGKSAQWIAREA 409 Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + H++ + + D +++ L DVV+VK S ++N + E Sbjct: 410 VEQGFSQAHIYQTPSNDLAIKVLKTLLSPRDVVLVKGSRGMKMEEIVNFIQER 462 >gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora tropica CNB-440] gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinispora tropica CNB-440] Length = 471 Score = 249 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 124/474 (26%), Positives = 195/474 (41%), Gaps = 24/474 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL + ++ A+ G + P V G + DSR + P F A G DGHD+ Sbjct: 1 MIPL-SLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 A++ GA V+ + +P+ VDD AL +LA A R T++ +TGS G Sbjct: 60 AIRAGAVAVLGTRVVA------GVPMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ + + T A GS+NN +G P T + + + + E G +G + +L Sbjct: 114 KTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPETRYLVLEKGARGVGHVSYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AH+ F E IA AK E+ L G LN DD + + Sbjct: 174 CEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPAEGLAVLNADDDLVAAMATR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + +G++ AD + + V G H N L Sbjct: 234 TRA----RVVRYGEAAEADVRAVDVVLDERGRPSFTLVTPEGRAPVRLGLTGRHQVSNSL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L V AL R T+ID+SYNANPASM AA+ Sbjct: 290 AAAAVARELGMPVTELATALGELGLVSSRRMD--VFERVDGVTVIDDSYNANPASMAAAL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ IAVLG M E+G Q H+++ + + + + + G + + Sbjct: 348 RALAGFRRRR---TIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVVGEAAAPIHEG 404 Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 G ++ L GDVV+VK S + + + L + Sbjct: 405 ATSVRDWEGESVQLTDQAGAVEVLRGDLRPGDVVLVKGSR-YRTWEVADALRAD 457 >gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] Length = 442 Score = 249 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 128/443 (28%), Positives = 196/443 (44%), Gaps = 17/443 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+ DSR + P F AI+G +DGHDFI A +GA VV ++ ++I Sbjct: 17 NAEITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVV----KYAVDGITI 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P F V D L AL K+A A R +IA+TGS GKTTTKEM+ L ++A G+ Sbjct: 73 PQFVVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAILP--VPSHATKGNL 130 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG PL++ ++ + +FELG +H GEI +V P + +IT IAPAH+ F I Sbjct: 131 NNHIGAPLSVLQLTSQHRYAVFELGANHPGEISHTVAIVHPDVTLITNIAPAHIEGFGSI 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + +A AK EI +GL +G +N DD++ + + Sbjct: 191 DGVARAKGEIHQGLSTSGIAVVNDDDAYAHFWDDILVDKKTLR--FSIEHPAEVYAQDIH 248 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + L ++ G H +N L + + L+ F Sbjct: 249 LDAYGCAQFSLILPNGRIDTQLQVPGLHNVRNALAAAACCHAVGVAIKDIQHGLNNFGGV 308 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + T+ID++YNAN S+ A+ VL+ G++I V GDM E+G Sbjct: 309 KGRLM---ILSGKNQSTVIDDTYNANLRSVLVALEVLA----ERPGKKIFVFGDMGELGA 361 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H ++ I + G D+ + + L + L Sbjct: 362 WATQHHQEVGLAARRLGIDLLLSCGSFSKLATDSFGAG--GEHFTNQELLAQNLIEKLSP 419 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 VV+VK S S +++N LL Sbjct: 420 DTVVLVKGSRSSAMEKIVNKLLN 442 >gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Lactobacillus sakei subsp. sakei 23K] gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus sakei subsp. sakei 23K] Length = 458 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 194/467 (41%), Gaps = 21/467 (4%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ + V ++ D+R + P F + G DGHDFI A + GA Sbjct: 5 LSEIARMTGAKNETEQWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFINQARENGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + PV V D L A +LA L+ ++AITGS GKTTTK+M Sbjct: 64 VATLWASARDDQ--PTDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTKDM 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L S + ++NN IGVP T+ M + + + E+GM G++ L+ + P Sbjct: 122 TAAVLGSQYNIHKTQANFNNEIGVPQTILSMEANTEILVIEMGMDRPGQLHALSEIAMPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A IT I AH+ F ++IA AK EI + L++ G + + D+ +G Sbjct: 182 VAAITMIGEAHIEFFKTRDKIADAKMEITDFLKEDGLLVYDGDEPLLNE------RVGDL 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG + + + ++ Q + + V I A N+ L + I Sbjct: 236 ERETFGSATTNTLYPIQVRAGETKT----QFKLNAWPDVAFEIPMMGAYNVNNALAAILI 291 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 E R + ++ + YN+NP + + S Sbjct: 292 GQHYHIKPEVMSKALANFEVTRNRTEWLVGTAGQRMLSDVYNSNPTAAIEVLRNFSHF-- 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 +GRRIAVLGDM E+G S+ H LA VL I V+L G + L D L + Sbjct: 350 ETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIYPAE 409 Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +HY E L + ++ D+VV+K+S+ +++ L E Sbjct: 410 QLHYFEKTQQPELITALAETIQPSDLVVLKASHGLHLEKVVAALTTE 456 >gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] Length = 454 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 200/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G G ++ +S D+R+I F A+ G +D H+F A Sbjct: 1 MIKV-TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V + ++ P V D AL +LA + +AITGS GKT Sbjct: 58 FEAGAGALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F IE + AK EI++GL+ G +N D + L ++ Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDTLWQSVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + ADF E + +G N+ + Sbjct: 233 DKKVIT--FSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 GAFR----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 H + ET + +I+ L D ++VK +N + + L E F Sbjct: 404 -CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454 >gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] Length = 457 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 214/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + S+S+P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ + S+ S + +E+ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL RI +GDM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKGYDA----FRILCVGDMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] Length = 457 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 29/473 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + +N I DSR I + F +KG DGH+FI A + Sbjct: 3 LTLHEIAKVVGAKNNVTAYEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA D+ A V+D L A KLA ++ +IA+TGS GKTTTK Sbjct: 62 GALATFTEKDLPA-----DQAHILVEDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AV+T I AHL F ++IA K ++ +G+ + + D L Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFL------PS 230 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + ++ G + A N ++ + Sbjct: 231 NLEVVRFGEGSDLTVS----ELTEYKDHLTFSTNFLDGQITLPVTGKYNATNAMVAAYVA 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + AL+ + R + + A ++ + YNANP +MK + S I Sbjct: 287 KHWGVTEENIFSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 343 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 344 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAIDTVIFYGEDIADLSQLASQMFP 403 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS R++ L + Sbjct: 404 IGHVYYFKKTADEDQFDAMVKRIKESLGEHDQILLKGSNSMNLARVVEELQSK 456 >gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] Length = 453 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 216/467 (46%), Gaps = 24/467 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T + QG +G G V+ + DSR P + F A+KG +D HDF+ V + Sbjct: 1 MMTLSQAARFAQGRLVG--ADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVAR 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V D G+ + DD AL +LA R A I +TGS GKTT Sbjct: 59 GAAALV--RDGFELAGAS---LIQAGDDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTV 113 Query: 123 KEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 KEML L + A G++NN IG+PLTL ++ + + E+GM+H GE+ +LT Sbjct: 114 KEMLAAILRAHAGADAVLATAGNFNNDIGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLT 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP +A++ AH +F E++A AKAEIFEGL G +N DD+ L +A Sbjct: 174 GLTRPQVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLIDAGVAVVNADDANLPLFRA-- 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A G SFG AD R + S + + V G H +N L Sbjct: 232 -AAGSHRQLSFGL-GLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + LS F +GR + + T+ID+SYNANP SMKA I V Sbjct: 290 AAAALALEVPLAAIAEGLSAFAGAKGR---LQIKQSPRGLTVIDDSYNANPDSMKAGIDV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + G R V+GD+ E+GE + + H ++ E L I ++ G A Sbjct: 347 LAGLP----GPRCFVMGDIGELGEAAPALHAEVGEHARLRGIEQLFALGEASRRAVQAFG 402 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +++D L + S L G V+VK S R++ L++ Sbjct: 403 GAGQG--FDSIDELLECLDSRLASGTAVLVKGSRFMRMERVVEHLMQ 447 >gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca bermudensis HTCC2601] gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius sp. HTCC2601] Length = 477 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 175/475 (36%), Positives = 251/475 (52%), Gaps = 19/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A G G NG+SID+R+IA + F A+K DGHDF+ A Sbjct: 1 MT-LWTAKDAAAATGGQVAG---DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA +V+ + + VDDV L L AAR R++A ++A+TGSVGKT Sbjct: 56 LENGASAALVSRIPEGVDPAN---LLIVDDVQAGLEALGRAARARTRARVVAVTGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK+ML + L + + +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 113 STKDMLRVVLGAQSRVHAAEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP +A+IT +APAHL+ F +E IA KA IFEGLE GT +N D LL A Sbjct: 173 MARPDVAMITIVAPAHLAAFESLEGIAREKAAIFEGLEPGGTAVVNGDLPVSPLLVAAGE 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I +FG+++ ++ + ++ + + G H A N + L Sbjct: 233 ARAAHVI-TFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVPGRHFAVNGMGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAA 356 + L D A+ AL + GRG+R LID++YNANPAS+ A+ Sbjct: 292 AVAHALGLDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANPASLAAS 351 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ GRRIA LGDM E+G + H +A++ ++ I V G Sbjct: 352 LEVLAGAKTRDGVGRVSHGRRIAYLGDMKELGATEAALHRAVADLPAMERIDLVHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L ALP+ H++ET DG+ ++ + GDVV+VK S S G R+++ + Sbjct: 412 MRTLWQALPQHKRGHWTETADGMAARVRHDMDAGDVVLVKGSLSTGLGRVVDAIR 466 >gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arsenophonus nasoniae] Length = 452 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 25/467 (5%) Query: 10 LLQAIQGHSIGIVPQ----GFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHAVQK 63 + QG I Q ++N ++ +SR I F A+KG H+DGH F A Sbjct: 1 MATVTQGTLQQIDEQQAGSLWLNAVTTNSRQRPIK--GLFIALKGKHFDGHHFAEQATIA 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++V + + P V+D A+ KLA R +SKA +I +TGS GKT+ K Sbjct: 59 GASALLVERPLT-----IHCPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVK 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L+ T G++NN IGVPLTL R+ + ++ + E+G +H+GEI + T++VR Sbjct: 114 EMVAAILTQSGMTLFTEGNFNNDIGVPLTLFRLTAEHEYAVIEMGANHIGEIAYTTNMVR 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P ++ + AHL F + +A AK EIF+GL + GT +N ++ ++ Sbjct: 174 PDSVLVNNLFAAHLEGFGSLTGVAKAKGEIFQGLAEQGTAVINLASHDWKNWQSYFKQQQ 233 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S K + ADF S S E+ + G H N L + Sbjct: 234 TLWRFSLTKQQQADFYAENIAIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALA 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A ++ L+ P GR A ++D++YNAN SM AA VLSQ+ Sbjct: 294 MSVGATLEQVSLGLAHVQPVSGRLYPIYLAPG---KLILDDTYNANTGSMIAAADVLSQM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G RI V+GDM E+G+ ++ H ++ + V G + + +S Sbjct: 351 P----GYRILVVGDMGELGDKTEKCHQEVGVATRQMKLDRVLSVGQQSVIISQ---QSGC 403 Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468 + + L + + + + V+VK S S +++ L E F Sbjct: 404 GEHFASKKELIAKLIPLIKEHETVSVLVKGSRSTAMEEVVHALQECF 450 >gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] Length = 451 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 125/465 (26%), Positives = 200/465 (43%), Gaps = 26/465 (5%) Query: 7 FHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ + + + +N I+ D+R I + F A+KG +DGH FI +A+ K Sbjct: 3 LSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAIAK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V+ ++ I S I V D L A ++A R + II ITGSVGKTTTK Sbjct: 63 GAIGVIVDHEVSV-ISSKRITQIIVKDTLIAYQEIANWWRNKLTIPIIGITGSVGKTTTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ L K + +YNN IGVP TL + + D+ + E+ M GEI L+ + R Sbjct: 122 ELIAAVLGVYGKVHKTQANYNNEIGVPKTLLSLTTNHDYAVIEMAMRARGEIALLSQIAR 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I +IT + AH+ E IA AK E+ + K LN+DD A+ Sbjct: 182 PTIGIITNVGTAHIGRLGSREAIAEAKCELLAEMPKDSIAILNHDDQRLMETAARIWQGK 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T G + + L+ + ++ G H A N L L + Sbjct: 242 TITYGLEGGD------------ITGELLDNQILRVEGIDFPLPLPGRHNALNYLAALAVT 289 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D + + + R + L+DE+YNA SM + L + Sbjct: 290 KQLNLDWNLLTQG----VTVDLPKGRSQQYSLSNNIVLLDETYNAGLESM---KAALQLL 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421 R +AVLG M E+GE S H ++ + I +++ A+ + ++ Sbjct: 343 KDTPGKRHLAVLGTMKELGEASAQLHQEVGAMAEKLGIDGLYILVDDPEAQAITQGV-KT 401 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I T + L + + GD ++ K+SNS G R++ + + Sbjct: 402 IETECFPTHEHLIERLTQVIQPGDRILFKASNSVGLNRVVEAVRD 446 >gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 459 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 213/470 (45%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +A+ I + V+G++ DSR + + F ++G DGH+F+ A Q Sbjct: 3 MNIAEIARAVDAQNDIEQWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D S P VDD L AL +L + ++A++GS GKTTTK Sbjct: 62 GASATLWAADR--SYEDDGYPRIVVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ ++NN IGVP+TL M + + + E+GMSH GE+ L+ LV Sbjct: 120 DMIASILSTQMNVTKTYANFNNAIGVPVTLLNMESNTEAVVVEMGMSHFGELDELSKLVT 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AH+ F + IA AK EI GL + GT N D+ L + Sbjct: 180 PDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGLREDGTFVYNGDEP----LLRERAKDL 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG+ + D +Q S+ E IG + N + + + Sbjct: 236 KQGQKTFGRQLDNDIYATSVEQ-SDHDLRFKVNLWPDEEFTIPMIGEYNVNNAMAAMMVG 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L L+ E R Q ++ + YN+NP ++K + L+++ Sbjct: 295 HLLHVTPSHLKIGLAN---VELTENRAEWLTGQQGEKILSDVYNSNPTAVKEVLETLNEL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---- 419 GRR+ VLGDM E+G+ S H LA + + V+L G + ALKD L Sbjct: 352 P--ETGRRLIVLGDMLELGDASAKLHAGLATEIDHQHFQKVFLVGNEMTALKDQLLADGY 409 Query: 420 RSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + D L +Q ++ D+V++K S+ ++N L + Sbjct: 410 PAADLKHYASDDQDQLIDDLQKTIQADDIVLLKGSHGIHLENVLNALKAK 459 >gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium nodulans ORS 2060] gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacterium nodulans ORS 2060] Length = 494 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 191/482 (39%), Positives = 262/482 (54%), Gaps = 15/482 (3%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQG--------FVNGISIDSRSIAPQEAFFAIKGPHY 51 M PLWT +L A G V G+SID+R++ + FFAI+G Sbjct: 1 MTEPLWTLDAVLAATGGTLAAAGDDAAGRDGAAQPVAGLSIDTRTLKVGDLFFAIRGETR 60 Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS 106 DGHDF+ A+ +GAG VV+ A + P+ V D VL A+ LA AAR RS Sbjct: 61 DGHDFVRDALARGAGAAVVSQARAAELAGSG-PLVVVPEAGDDPVLAAMRALAAAARARS 119 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 A ++A+TGSVGKT TKE L L++ T+A + SYNNH GVPLTL RMP FG+FE Sbjct: 120 AARVLAVTGSVGKTGTKEALRHVLAAQGTTHASVASYNNHWGVPLTLGRMPAGSAFGVFE 179 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 +GM+H GEI L LVRP IA++TT+ P H+ +F + IA AK EIF GLE G LN Sbjct: 180 IGMNHAGEIAPLARLVRPEIAIVTTVEPVHIEHFRSLSGIADAKGEIFCGLEPGGIAILN 239 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D+ FE L A + A I SFG+ AD + + + S ++ + G + Sbjct: 240 RDNPHFERLSAHALASRAGRIVSFGEHPQADVRAERIVMRPDLSIVDASVLGVPVTYQLG 299 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H A N L + V L AD+ A +L+ HP GRG+R L +G L+DESY Sbjct: 300 TPGRHTALNSLAVMAAVHALGADLALAALSLAQLHPPVGRGERTLLRLREGEALLVDESY 359 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANPAS++AA++ L+ I G+GRRIAVLGDM E+G + H +LA + + I V+ Sbjct: 360 NANPASVRAALATLAGIEIRGQGRRIAVLGDMLELGSEAPRLHRELAASVEQHGIDLVFA 419 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +G + L ++LP + T L + S + GD V++K SNS R++ L Sbjct: 420 AGPMMAELFESLPAGTRGVAAPTSAELLDAVLSEIRPGDAVMIKGSNSIRMGRIVEALKA 479 Query: 467 EF 468 + Sbjct: 480 RY 481 >gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] Length = 456 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H++ + ++ S+ +N I DSR I + F +KG DGHDFI A +K Sbjct: 3 LSLHEIAKVVEAQNSLSEFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEK 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + P V+D L A LA + + +IA+TGS GKT+TK Sbjct: 62 GAAATFSEHPIEGK------PYLLVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP + + + E+G H+G+I L+ + + Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIAQ 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T +A AHL F E+IA K +I +G++ G + D L + Sbjct: 176 PRIAVLTIVAEAHLEFFGSREKIAQGKMQIVDGMDSHGILLAPGDPIIDPYLPDNQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ +++ + V G + A N ++ + Sbjct: 236 ----------FGEGEEIFVKDIKEDKNSLTFTTNVLDQAVTLPLSGKYNATNAMIAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + ++AL + R ++ + YNANP +M+ + S I Sbjct: 286 KLLAVSDEDIVEAL---ESVQLTKNRTEWKKAANGADILSDVYNANPTAMQLILETFSNI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + +G++IAVL DM E+G S S H L LS I + G + L + Sbjct: 343 PNNPDGKKIAVLADMKELGPDSVSLHSKLIMSLSPEKIDTLIFYGQDIQELSQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HV++ + + L + L D +++K SNS RL+ L Sbjct: 403 IGHVYFFKKDEQLDQFEELCQLTKEKLGQNDQILLKGSNSMHLDRLVEYLE 453 >gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] Length = 450 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 147/463 (31%), Positives = 239/463 (51%), Gaps = 18/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ + I N I +S+ I + F A++G DGHD+I A Sbjct: 1 MI--WNSKTLSDALG---LLISQSIITNEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+V+ + + + + VDD L AL +LA+ R S A IAITGSVGKT Sbjct: 55 INQGASAVIVSKQVDIADKN---KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L L T+A G++NNH+G+ + LA MP D +F IFELGM+H GEIR L Sbjct: 112 STKEALKTLLQHEALTFASRGNFNNHLGLLINLASMPDDTEFAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +E+IA AK EIFE +K G +N D + ++ + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEDIAEAKCEIFESFDKDGIAVINSDSNCYDRILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I+ I++FGKS +A+ E S +V L+ K + + + ++ Sbjct: 232 KLSIENIHNFGKSSSAEL------ILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENY 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ ++ + + + K +N G +I + YNA+P SMKAA+ L Sbjct: 286 ASILLIIFLLNQDLNKAAGYLKNIPMTKGRGKIINIGNSRIICDYYNASPTSMKAALEYL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++G+M E+G+ S+ H +L + S V+L G + + DALP Sbjct: 346 KQMPATNK---TAIIGEMLELGQNSERLHKELVPYILDSGCSKVFLVGANTKYIYDALPE 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L + +++++K S ++I+ Sbjct: 403 KITKAYFKNIDELIASTNDLFKNDELILIKGSRGIKLDKIIDY 445 >gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] Length = 452 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 209/471 (44%), Gaps = 23/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L + +G +N +S D+R+I P F A+ G +D HDF L+A Sbjct: 1 MISLM-LSQLADELDAQLVGN--DAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA ++V+ + P V D AL +L + +AITGS GKT Sbjct: 58 VEAGATALLVSRAL-----DTQTPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ + + + G++NN IGVPLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL +N D + E + Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAPGSAAIVNLDSNGGEHWQE-VL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A +S S F + S ++ E+ EV IG H N L Sbjct: 232 ADKQVKTFSVLDSTADYFAHKITMNNSGEASFELLSPMGGFEVKLGIIGQHNVANALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L A ++ L +GR TLID+SYNA+ +M Sbjct: 292 ALAFELGASIEMVQSGLRHLAKVKGR---VESIALTEKITLIDDSYNASVPAM----KAA 344 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + +G R +LG+M E+G+ S + H + E + + HV G A+ Sbjct: 345 ADLLSSFKGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTYGADARAISQ---- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468 + +T D + FI+ L D ++VK +NS G ++ L E + Sbjct: 401 QCQGTHFDTHDAMIEFIKQQLPLHDCAQTLLVKGANSAGMSKIAAALKEMY 451 >gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] Length = 450 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 1 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 55 ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L I+ +L D +++K SNS G + ++ L + Sbjct: 399 KYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448 >gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] Length = 470 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ QA+ + + + DSR I F + G DGH+FI A Sbjct: 21 MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 74 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA + + + PV V D L A+ +LA + A ++AITGS GKT Sbjct: 75 ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 132 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++ LS KTY G+YNN+IG+P T+ MP D + + E+GM H EI L+ Sbjct: 133 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 192 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P A IT I AH+ N E IA AK EI +GL G + + D+ L Sbjct: 193 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 248 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++T+ +FG +E + +E I + N+ L Sbjct: 249 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +I + + R ++ + YNANP +M + Sbjct: 301 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +GRRIAVL DM E+G+ S + H ++E + + ++L G + ALK+ L + Sbjct: 361 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 418 Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V Y E + L I+ +L D +++K SNS G + ++ L + Sbjct: 419 KYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 468 >gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 461 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 218/468 (46%), Gaps = 19/468 (4%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF ++ +Q + +N I DSR +A F + G DGH FI+ A + Sbjct: 3 LTFWEIADVVQATNNWKQWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARSQ 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + +S+ P+ V D L A+ LA+ + +IA+TGS GKTTTK Sbjct: 62 GAKAALWSKE--SSLAPEGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L+ TY G+YNN IG+P T+ MP + + + E+GM H EI FL+ L Sbjct: 120 DMIAAVLAKKYITYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHADEIDFLSQLAS 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A IT I AH+ N +EIA AK I +GL + G + + ++ + L A Sbjct: 180 PTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLIIPENEPLLKPL----TANS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +TI +FG + ADF + Q E++ +L G + G + N + L I Sbjct: 236 TQTIKTFGFTNEADFV--ECVQLEEKNKTTFKLSGYQLPFTIPVPGKYNVDNACIALIIG 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + L+ R ++ + YNANP ++ + Q+ Sbjct: 294 KWFQVPEKEMQQTLAE---VHLTKNRTEWVTANNGVEILSDVYNANPTAVSLVLDSFGQM 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421 GRRI VLGDM E+G S+ H L++ L I V+L G + L L + Sbjct: 351 --FTNGRRIVVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEMKNLFLILEKTYG 408 Query: 422 IHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HVHY M+ L ++++++L D+++VK SN +I L ++ Sbjct: 409 NHVHYYPKMEKEHLIVYLKATLQPNDLLLVKGSNGMRLTEVIEALTKK 456 >gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47_FAA] gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47FAA] Length = 487 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 137/482 (28%), Positives = 214/482 (44%), Gaps = 27/482 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T DL+ A G + + IS+DSR + + F I G + D H F+ A+ G Sbjct: 6 FTCRDLVLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNG 65 Query: 65 AGLVVVNTDMVASIGSLSI-----------------PVFGVDDVLGALNKLAVAARLRSK 107 A V + I V D AL + R R K Sbjct: 66 AAAVFTSRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQK 125 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 ++ ITGSVGKTTT+EM+ ALS+ Y G+ N+ +GVP+T+A +P G+ EL Sbjct: 126 LPLVGITGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQIGVIEL 185 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 GMS GE+ + + R AV+T I H+ + I K I +G+ + G++ LN Sbjct: 186 GMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAENGSLILNG 245 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + L G + +G S + ++ + + K + V Sbjct: 246 D----DRLLRSVIPEGNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLRV 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G HM N L L + ++ A L F +GR + + T+ID+SYN Sbjct: 302 MGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTLKGG---ITVIDDSYN 358 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+P SMKA + VL + P G GRRIAVL DM E+G + FH ++ E ++++ + V L Sbjct: 359 ASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQVVLL 418 Query: 408 GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + L + V + E ++ + ++ +L GD V+ K SNS + + L Sbjct: 419 GGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLFKGSNSMKLSQAVRHL 478 Query: 465 LE 466 E Sbjct: 479 EE 480 >gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] Length = 458 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA + R + ++ +TGS GKT+TK+ Sbjct: 65 AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + E IA AK EI GL++ G N D+ + + + Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLMAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNKDENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ I+ V+ G + + S Sbjct: 357 GFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFTYGRLGAQIAEGAKINFPS 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKAYDNKEALVKDLQAVVDVKDVVLVKASRGMKLEEVITMLK 458 >gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] Length = 454 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 116/472 (24%), Positives = 200/472 (42%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +FH++ + + + ++ I DSR IA + F +KG DGH+FI A + Sbjct: 3 LSFHEIADVVGALNDVSQFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + I +P V D L A LA + +IA+TGS GKTTTK Sbjct: 62 GAVA------TFSRIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ K Y G+YNN IG+P T+ MP + E+G HLG+I L+ + + Sbjct: 116 DMIHDVLATTYKIYKTQGNYNNEIGLPYTVLHMPDSTQKLVLEMGQDHLGDIDLLSKIAQ 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I ++T I AHL F E+IA K +I G+ K GT+ + D + L + Sbjct: 176 PKIGIVTLIGEAHLEFFGSREKIAQGKMQIANGMAKDGTLIVPADKIINDYLPDNQKVVR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D + + + + + + G + A N ++ + Sbjct: 236 ----------FGPDQDIFLTELVERKDSLSFAVNFMDGLIELPVTGKYNATNAMLATYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + AL + R + + + ++ + YNANP +MK + + Sbjct: 286 QLEGVADEAIRSALKNLVLTKNRTEWKKASNGAD---ILADVYNANPTAMKLILETFLTL 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + G++IA+L DM E+G+ S H + L+ ++ + G + L + Sbjct: 343 PANEGGKKIALLADMKELGKDSVQMHSQMIRALNPEDLDTLICYGEDIAELAQLASQVFP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + L +Q+ L D +++K SNS +++ L Sbjct: 403 MGKVYYFKKTAEEDQFADLVKQVQTILQPADQILLKGSNSMQLDKVLEALEN 454 >gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] Length = 470 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 211/476 (44%), Gaps = 24/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + + + A+ G G PQ +N +S D+R F A+KG +D HDFI Sbjct: 1 MISV-SLAWVAMAVNGQLRGASNPQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ +GA V+ + P V+D AL L A + IAITGS GK Sbjct: 60 ALAQGAIAVITQQPLDEQT-----PHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML + A G++NN IGVPLTL R+ + + ELG +H GEI + T Sbjct: 115 TTVKEMLAAIIGQQYNVLATAGNFNNDIGVPLTLLRLEAQHQYAVVELGANHAGEIAYTT 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP +A++ ++ AH+ F + +A AK EIF+GL + G Y+ + + Sbjct: 175 SLTRPDVAILNNVSAAHVEGFGSVHGVAKAKTEIFQGLPEDGLAITPYESEYLPCWRN-- 232 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLM 298 K + +FG S+ AD + + + S + + V G H +N L Sbjct: 233 -VRAGKRLQTFGLSEQADVRASQIELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + L+ P +GR + N T+ID++YNA+ AS KAA+ Sbjct: 292 ASAAALEVGMSAEEIATGLANVAPVKGRLTPMQLTEN---VTVIDDTYNASVASTKAALD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L +G I VLGDM E+G ++++H D+ + IS + G + + Sbjct: 349 LL----GSYQGTTIMVLGDMAELGAEARAYHEDVGDHAIQAGISKFFTLGVLSQSASEVF 404 Query: 419 PRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + L I ++ + V+VK S S R++N L E + Sbjct: 405 NGRG-GKHFSSFATLVDEILQTITQRSVSEHVTVLVKGSRSSHMERVVNALQEHYK 459 >gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] Length = 457 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 205/473 (43%), Gaps = 29/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A Sbjct: 3 LTLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ A VDD L A KLA +++ +IA+TGS GKTTTK Sbjct: 62 GALATFTEKELPA-----DQVHILVDDALEAFQKLAAYYLEKTEVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L+ L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVNPFLPSNLEVVR 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +L + + +V G + A N ++ + Sbjct: 237 ----------FGDGAELTVSDLTEFKDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVA 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + AL+ + R + + A ++ + YNANP +MK + S I Sbjct: 287 KHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 343 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 344 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDMVIFYGEDIAELSQLASQMFP 403 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 404 LGHVYYFKKTADEDQFDAMVKQIKESLGEHDQILLKGSNSMNLAKVVEELQAK 456 >gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] Length = 466 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 122/477 (25%), Positives = 191/477 (40%), Gaps = 23/477 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P+ I G + + + DSRS+ P + F A+KG +D HDFI V Sbjct: 4 TPMTNLQQAAGWIAGARVCGDGAVEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVV 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA V+V+ ++ A +P D AL +L R + +A+TGS GKTT Sbjct: 64 ARGAAAVLVSREVDA-----GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTT 118 Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ G+ NN IG+PLT+ R+ + ELGM+H GE +L Sbjct: 119 VKEMIAAIFAAAVGEEQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +P +AVIT H +E +A A L G D Sbjct: 179 AGIAQPTVAVITNAQREHQEFMVSVEAVAHEHAAAIAALPANGVAVYPLDAESGGAYAPV 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + M+V+ G + +V +G H +N L Sbjct: 239 WRNAAGARRALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALA 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + V + L+ F +GR + G +ID++YNANP SM+AAI Sbjct: 299 AIACALAAGVHVPAIQRGLAGFQAVKGR---LQVKYTPGGTVVIDDTYNANPDSMRAAID 355 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ + R+ VLGDM E+G+ +FH ++ I +W +G + A Sbjct: 356 VLAGFAA----PRVLVLGDMGEVGDQGPAFHQEIGAYAKARGIGTLWATGELAVHAVQAF 411 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV-----VVVKSSNSCGFYRLINLLLEEFPA 470 + T + L ++ G V V+VK S R++ L+ + A Sbjct: 412 GAGGR--HFGTAEALAKALEEDSR-GMVEQVGAVLVKGSRFMRMERMVAALVADTSA 465 >gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 455 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 132/465 (28%), Positives = 199/465 (42%), Gaps = 19/465 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ +L + +QG G + DSR IA F A+ G ++DG+D++ Sbjct: 2 MRPM-RLSELQEPLQGRITG--EDVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYVEAV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ S ++P V+D AL +L R ++AITGS GKT Sbjct: 59 AENGAVAALVSR-----SSSSALPQLCVEDTQTALGRLGAFNRDLYTGPLVAITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K ++ LS T A G++NN +GVPLTL R+ + +F + E+G + G+I +L Sbjct: 114 TAKNLINGVLSQRGATLATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWLCE 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +AV+ PAH+ +F +E IA K EIF+ L +N D + E KA++ Sbjct: 174 LGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKARAG 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I G + Q+ S ++V G H N L + Sbjct: 234 TATILDFSLNGDAAVVATQIESHGIA--GSSFVAVTPKGCVDVSLRLPGEHNIANALAAI 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +D L P GR A +ID+ YNANP S AAI L Sbjct: 292 AVGLACELALDEIAAGLESVAPVAGRLSVQVAASG---ALVIDDCYNANPGSALAAIDTL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + EG+ V+G M E+GE S H L ++ W G + DA Sbjct: 349 A----ASEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVGAELKVAVDAF-- 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + E D + +S GD V++K S R++ L+ Sbjct: 403 GERGRWFEHCDQAVVAASASFSQGDTVLIKGSRGARMERVLQALV 447 >gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 454 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 200/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G G ++ +S D+R+I F A+ G +D H+F A Sbjct: 1 MIKV-TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V + ++ P V D AL +LA + +AITGS GKT Sbjct: 58 FEAGAGALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F IE + AK EI++GL+ G +N D + L ++ Sbjct: 173 LVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDALWQSVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + ADF E + +G N+ + Sbjct: 233 DKKVIT--FSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 GAFH----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 H + ET + +I+ L D ++VK +N + + L E F Sbjct: 404 -CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454 >gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 450 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 210/461 (45%), Gaps = 20/461 (4%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ ++ + G + G + G++ DSR + + F A++G +G DF+ A+ + Sbjct: 4 YSLKEIAEITGGALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQ 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG V+V+ +S P V D L AL L R R ++A+TGS GKTT K Sbjct: 64 GAGGVLVD-------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+LT L+ A G+ NNH+GVPLTLAR+ + + + E+GM+H GE+ L+ L R Sbjct: 117 EVLTAILNQSGPVLATRGNQNNHVGVPLTLARLGPEHRYAVLEMGMNHPGELTLLSGLAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+I APAHL + IA+AK EI GL+ G LN DD F + + Sbjct: 177 PTLALINNAAPAHLEGLGSVAAIAAAKGEILSGLDNRGLTILNGDDPFADFWAER---AP 233 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + +EV+ + G H +N+L Sbjct: 234 GEVWRFSLEHRPTRVRGHWRAHEQGGGHLEVRAPQGQFTLEIPLPGQHNGRNVLAATTAA 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + +A++ + R + ++D++YNANPAS++AA+ VL+ Sbjct: 294 LALDIPIPQIQRAVA---GLQTIPGRLQWRSGPHGSRMLDDTYNANPASLEAALRVLAAQ 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G+RI VLGDM E+G + +H + + ++ G +A + Sbjct: 351 P----GQRILVLGDMGELGPEAALYHHQAGLLARQLGVERLYTLGSLAEEAANAF--GTN 404 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L + L + VV++K S + R++ L Sbjct: 405 AEAFSELPPLLAALHRRLDEETVVLIKGSRAARMERVVQAL 445 >gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] Length = 457 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 134/464 (28%), Positives = 212/464 (45%), Gaps = 20/464 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + I G I + V+G+ IDSR + FFA+ G +GHDF L A + GA Sbjct: 6 IDTLSKMINGKIIRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGAC 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VVV ++ + V+D L AL +A + + R +A+TGS GKTTTK+M Sbjct: 66 AVVVKREIEGA----DCFQIKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMT 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS KT IG++N+ GVPLTL + + + E+GM+H GEI ++ LV P + Sbjct: 122 ASVLSKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISELVEPDL 181 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT + H+ N E I AK EI +GL+K GT+ +N DD FF+ + Sbjct: 182 AMITNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFFKDYTNDEFNVVKV- 240 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + DF+ S+ + V GK+ + N L + Sbjct: 241 -----GINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFHF 295 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + + L F P R K TLID++YN+NP ++K A+ +L++I + Sbjct: 296 GLNYEQIKEGLDDFMPTGNRMKIEEVNG----ITLIDDTYNSNPEALKEALGLLNRIGGN 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----I 422 +AVLGDM E+GE S+ H + + + + G + + + Sbjct: 352 NRK--VAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIKGAGENGMDPG 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Y + L + L +GD V+VK+S F +++ + + Sbjct: 410 KALYFFEKNYLVEEVFDFLKEGDFVLVKASRGMKFEDVVDAIKK 453 >gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] Length = 461 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 137/478 (28%), Positives = 213/478 (44%), Gaps = 29/478 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L + + +G V IS D+R + FFA+KG ++D H ++ A Sbjct: 1 MLKLNT-QKLAEILNAKLVGNGL-VEVENISTDTRKMVVNSLFFALKGENFDAHHYLDKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV L +P V+D AL +LA R ++A+TGS GKT Sbjct: 59 VAQGAVALVVQKI----NSHLDVPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G++NN IGVPLTL R+ + F + ELG +H GEI Sbjct: 115 TVKEMTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T L +P +A++ +A AHL F IE +A AK EI+ GL +G +N + ++ Sbjct: 175 YTTSLAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRGLPASGVAIINKEHNYSIKWA 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ + ADF + S E+ + + +G H +N Sbjct: 235 QEIGERAIQYFAY--QDATADFYADNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNA 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + K L + +GR + N L+D++YNAN S+++A Sbjct: 293 LAATALAMNVGASLTQVKKGLEMRSQVKGRLFPIQPCEN---LLLLDDTYNANVDSLQSA 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 ISVL + S RI ++GDM E+GE SQ H +A+ ++ V G + Sbjct: 350 ISVLQKYSA----FRILIVGDMAELGENSQLCHQQVADYAKSADLDLVLSFGTESAVISQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQ----SSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468 A + L +++ L + V++ K S +IN L E F Sbjct: 406 A----NLGQHFTDKATLCAYVKPLIEQKLKENQKVVILAKGSRRMKMEDVINSLKETF 459 >gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 455 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 136/464 (29%), Positives = 207/464 (44%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +L A+ I +G+SIDSR+IAP + F A+ GP +DGHD++ Sbjct: 1 MLKALKLSELTSALNARLI--AADATFDGVSIDSRAIAPGQLFVALAGPRFDGHDYLNEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + ++P V+D AL +L R + AITGS GKT Sbjct: 59 AAKGAVAALVEREVT----NSTLPQLLVNDTRQALGQLGALNRAAYGNPVAAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + A G+ NN +GVPLTL + + + ELG S LGEI + Sbjct: 115 TVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +PH+AV+ AH+ F G E+I AK EI EGL+ G LN DD FE+ K ++ Sbjct: 175 MTKPHVAVLNNAGTAHVGEFGGPEKIVEAKGEIIEGLDADGVAVLNLDDKAFEIWKTRAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + N + + + V + +G H N L Sbjct: 235 ERKVLTFALSNLAANFYASDLD-RDARGCPAFNLHSPDGAERVQLNLLGTHNVANALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + + L+ P +GR L +ID++YNANP+SM AA+ +L Sbjct: 294 AAAHALGVSLPGIVAGLNAVQPVKGRSVAQ---LASNGMRVIDDTYNANPSSMCAAVDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+GE +Q H D+ + ++ G + A Sbjct: 351 AGFS----GRTVLVLGDIGELGEWAQQGHHDVGAYA-RGKVDALYAVGPMMAHAVAAF-- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H + T L + + +++K S S ++ L Sbjct: 404 GEHARHFTTQAELIQALGAEQDPNTTLLIKGSRSAAMENIVAAL 447 >gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. RCC307] gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. RCC307] Length = 464 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 119/474 (25%), Positives = 197/474 (41%), Gaps = 21/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53 M+P DL + + IS DSR++ P + F ++G +DG Sbjct: 1 MSPSLCLQDLARLLDAPVQRRSAPADPTTLAWTFEHISTDSRALQPGDLFIPLRGERFDG 60 Query: 54 HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 HDF+ AV G ++ D + + VDD L A ++A+A R + ++A+ Sbjct: 61 HDFLDAAVSVGVAGALIARDWAGYVPE-QLATVVVDDTLSAYQQIALAWRRQLHCPVVAV 119 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTT+E++ LS + + +G+ NN IGVP T+ R + E+GM LG Sbjct: 120 TGSAGKTTTRELIKACLSPLGAIESSVGNENNDIGVPRTMLRSNSSHAGLVLEMGMRGLG 179 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI L+ P +AVIT I AH+ IA AK EI + L+ +G + + D E Sbjct: 180 EIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQAKCEITDRLKPSGLLVIPAGDPLLE 239 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 ++ + ++ + W + +E+ QG + G Sbjct: 240 AEVSRVWSGRVQRVALSDDPLEPGTPAPDWVAQLQGQSIELASQGLKLINPLEGRHN--- 296 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + L A + + A + L ++DE+YNA+P +M Sbjct: 297 -----ARNFLLALAAAQELGVTAEQLRDLSVSLPGGRARRLRINGVNILDETYNASPEAM 351 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHV 411 A++ + + G R AV+G M E+G+ S S H + E + + + + G Sbjct: 352 LASLEL---LKQQPGGHRYAVVGTMLELGDQSLSLHRQVGEKATALGLDGLVVVASGPEA 408 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 AL + + + ++ L GD V++K+S RLI LL Sbjct: 409 SALMQGAAGLSKLVCVASPEAAAEPLKQLLRPGDHVLLKASRGIALERLIPLLE 462 >gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] Length = 476 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 221/473 (46%), Gaps = 15/473 (3%) Query: 1 MNPLW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P W + ++++A+ G+ + P+ + DSR + P + F+A+KG +DGHDF+ Sbjct: 1 MAPRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPGDLFWALKGERFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 AV++GA VVV + S+ + I V VD+ L AL LA R + A + AITGS Sbjct: 61 HQAVREGASGVVVQREYTISVENRPEIAVIAVDNTLRALGDLAAWWRRQHTAKLAAITGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM L KT G++NN IG+P+TL ++ + E+GM+H GEI Sbjct: 121 SGKTTAKEMTAAILEMENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEMGMNHKGEIA 180 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + P A I + AHL ++ +A AK E+ I LN DD+ Sbjct: 181 RLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNGDDAVLMKHA 240 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K + G +A + + + +++ + + G H +N Sbjct: 241 TKFDRKFVTFGMKKGNHIHA---VNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNA 297 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L I L V+ + L F +GR ++C +G LID++YNANP++++ A Sbjct: 298 LAAAAIALSLKEPVENIARGLRNFKGVKGR---FQCIPLEGDIILIDDTYNANPSALETA 354 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + ++ +GR I LGDM E+GE + S H + ++ S ++ G H +++ Sbjct: 355 LLSALKM-VDRDGRLIVGLGDMLELGEAAVSAHREAGSRIAESGASRLFFMGTHGEHVRN 413 Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + HV SET D L I DV+ +K S F ++ L Sbjct: 414 GAIAAGMPSNHVIISETHDELTANIIRKARPKDVIFLKGSRKMQFEKVSEGLE 466 >gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 464 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 175/467 (37%), Positives = 244/467 (52%), Gaps = 13/467 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT + A +G+SID+R++ P + F A+K DGHDF+ A Sbjct: 1 MT-LWTASE---AAAATGGQATIDWQASGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V + + P+ VDDV AL L AAR R KA ++ +TGSVGKT Sbjct: 56 LEKGAAAALVTH--IPDDVAADAPLLIVDDVQTALEALGRAARDRCKARVVGVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI L Sbjct: 114 STKEMLATILSDQGRTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAR 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPH+A++TT+A HL F + IA KA IFEGLE GT +N D ++L ++ Sbjct: 174 QARPHVALVTTVAAVHLEAFESVAGIAHEKAAIFEGLEAGGTAIVNADLDHTDIL--RTC 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + +D++L Q + + G+ + G H A N L L Sbjct: 232 AARHGAVIVDFGRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPASMKAAISV 359 L D+D AI L+ + P GRG R R AL G L+D+SYNANP SM AA+ V Sbjct: 292 AACVALGVDLDAAIAGLAKWAPVTGRGVRERLALPDGGQIELLDDSYNANPTSMAAALDV 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ RIA LGDM E+G ++ H LA+V ++ I V G + AL +ALP Sbjct: 352 LAAAQGAR---RIAFLGDMKELGPQERAMHAGLADVPAMARIDKVHCIGPLMRALHEALP 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ET D + + + GD V+ K S S R+++ L + Sbjct: 409 EDKRGLWFETSDEMARHLPGLVQAGDAVLAKGSLSMALARIVDGLRK 455 >gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] Length = 457 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A Sbjct: 3 LTLHEIAEVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ A VDD L A +LA ++ +IA+TGS GKTTTK Sbjct: 62 GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L++L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLEVVR 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + L + + G + A N ++ Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L + + AL+ + R + + A ++ + YNANP +MK + S Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401 Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 402 FPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456 >gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] Length = 450 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 144/463 (31%), Positives = 234/463 (50%), Gaps = 18/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ + I N I +S+ I + F A++G DGHD+I A Sbjct: 1 MI--WNSKTLSDALG---LLISQSIITNEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+V+ + + + + VDD L AL +LA+ R S A IAITGSVGKT Sbjct: 55 INQGASAVIVSKQVDIADKN---KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L L T+A G++NNH+G+ + LA MP D +F IFELGM+H GEIR L Sbjct: 112 STKEALKTLLQHEALTFASRGNFNNHLGLLINLASMPDDTEFAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +E+IA AK EIFE +K G +N D + ++ + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEDIAEAKCEIFESFDKDGIAVINSDSNCYDRILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I+ I++F D E S +V L+ K + + + ++ Sbjct: 232 KLSIENIHNF------DKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENY 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ ++ + + + K +N G +I + YNA+P SMKAA+ L Sbjct: 286 ASILLIIFLLNQDLNKAAGYLKNIPMTKGRGKIINIGNSRIICDYYNASPTSMKAALEYL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++G+M E+G+ S+ H +L + S V+L G + + DALP Sbjct: 346 KQMPATNK---TAIIGEMLELGQNSERLHKELVPYILDLGCSKVFLVGANTKYIYDALPE 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L + +++++K S ++I+ Sbjct: 403 KITKAYFKNIDELIASTNDLFKNDELILIKGSRGIKLDKIIDY 445 >gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 472 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 220/470 (46%), Gaps = 15/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + D+++A+ + + V G+ DSR + P + F + G DGHD+I Sbjct: 1 MKAIK-LMDVVKAVHAIDYTALDRFISVTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA + + + A+ I + VDD L A+ LA R +I ITGS GK Sbjct: 60 AIKNGAVATLWSKEAQAAPAD-QIAIVLVDDTLVAMQALANYYRNSLNPKVIGITGSNGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M L + K + G+YNN IG+P TL +MP D + E+GMS GEI L+ Sbjct: 119 TTTKDMTANVLKAKYKVHKTEGNYNNEIGLPYTLLQMPADTQVVVCEMGMSDFGEIEVLS 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P IAVIT I +HL IA AK EI +GL++ G ++ L ++ Sbjct: 179 KIAQPDIAVITLIGESHLEFLGSRANIAKAKLEILKGLKEDGLFIYPANEP----LLQEA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 SFG ADF K+ +++ + + + +G + N ++ Sbjct: 235 GQALGDRARSFGLDNTADFYAYDLKEDKNKTYFHTNIDDQVL-CSIPVMGAYNVGNAMIA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + L ++ AI LS F + R ++++++YNA+P S+KA + Sbjct: 294 LTVAQELKVPIEQAIFQLSQFKLTKNR---LEWLTASNGASILNDAYNASPTSIKAVLKS 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 SQ+ EGRR+ LGD+ E+G S ++H L++ + I+ V+L G + L AL Sbjct: 351 FSQVETQAEGRRLVALGDVKELGPESANYHAALSQEIDPKKIAKVYLLGPQMQHLYQALQ 410 Query: 420 RS--IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 Y L IQ+ L D ++VKSS ++ L+ Sbjct: 411 AKFPKQALYYTENDHKALVATIQADLQVQDHLLVKSSLGTDMLYVVGKLI 460 >gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] Length = 462 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 172/466 (36%), Positives = 254/466 (54%), Gaps = 10/466 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ D ++A G S NGISID+R++ + F A+K DGH++I A Sbjct: 1 MS-LWSSKDAVKATSGVSRI---NWVANGISIDTRTLKMGDLFVALK-DQRDGHEYIKIA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ V ++P+ VDDVL AL +A AR R++A +I ITGSVGKT Sbjct: 56 FENGAAAALVSR--VPDGLDENLPLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L + KT+A SYNNH GVPLTLARMP + DF + E+GM++ EIR L Sbjct: 114 STKEMLKSILIANGKTHAAERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLAK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L + +A++ +AP HL F IE IA AKAEIFE L + +N D S F++L Sbjct: 174 LAKLDVAIVLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQ 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + +FG + AD++L + ++++ ++ G H A N + Sbjct: 234 KVRS-KLITFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVF 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + S + GRGKR + G LIDESYNANP SM+AAI+VL Sbjct: 293 AAAEAVGIERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQ GR++A+LGDM E+GE FH +LA++ S+ I ++L G + LK LP Sbjct: 353 SQ--SEASGRKVAILGDMGELGENEMLFHSNLAKIQSIKAIDILYLVGPMMRCLKKELPS 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E++D L I++ ++ D ++VK SN +++ L + Sbjct: 411 QKQCLWFESVDALIKEIENLVIINDTIMVKGSNYTKVSKIVEKLKD 456 >gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] Length = 455 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 209/464 (45%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L A++G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 1 MLKPLSLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVEREVA----DVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G ++I AK EI EGL + G LN DD F++ KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + + + + G+++ V + +G H N L Sbjct: 235 AHKVVSFARSNPKADFHASDIG-RDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ P +GR + +ID+SYNANP SM AAI +L Sbjct: 294 AAAHAVGLSLSGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPTSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAFGA 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L + + +++K S S ++ L Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447 >gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. AzwK-3b] gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. AzwK-3b] Length = 479 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 177/476 (37%), Positives = 251/476 (52%), Gaps = 17/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT + +A G G+SID+R++ P + F A+ DGHDF+ A Sbjct: 1 MT-LWTAAEAARATGGR---ASTDWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V+ + + + P+ VDDV AL + AAR R++A ++AITGSVGKT Sbjct: 56 LDKGAAAALVSH-VPPGVDAARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LSS +T+A SYNNH GVPLTLARMP D F + E+GM+H GEI L+ Sbjct: 115 STKEMLRDVLSSHGRTHAAEASYNNHWGVPLTLARMPADTQFAVIEIGMNHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+A++TT+APAHL+ F +E IA KA IFEGLE+ G N D + +L + Sbjct: 175 MARPHVAMVTTVAPAHLAAFESLEGIAREKASIFEGLEEGGAAVYNGDLAVSPILAD-TA 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + SFG+S ++ + + + E + + G H A N + L Sbjct: 234 ARHAAHLLSFGESPAMHHRVTRITLKNACTVAEGRAWRSPVLFKIMVPGRHFAVNAMGVL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAA 356 + D + +L + P GRG R R L+ LID+SYNANPAS+ AA Sbjct: 294 AVTHARGLDRAKVVTSLGQWQPGSGRGARERIVLDIVDAHVVVELIDDSYNANPASLGAA 353 Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P +GRRIA LGDM E+G + H LAE ++ I V G Sbjct: 354 LEVLAAAVPSNDMGRVSKGRRIAYLGDMKELGRTEAALHAALAEHPAMALIDRVHCVGPL 413 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L + LP ++ET D + + L GDVV+ K S S G R++ + + Sbjct: 414 MRHLWEVLPDGKRGRWTETADEMAANVARDLDAGDVVLAKGSLSMGLARVVAAIRK 469 >gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus ND03] Length = 457 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A Sbjct: 3 LTLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ A VDD L A +LA ++ +IA+TGS GKTTTK Sbjct: 62 GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L++L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLEVVR 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + L + + G + A N ++ Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L + + AL+ + R + + A ++ + YNANP +MK + S Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401 Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 402 FPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456 >gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrospira platensis str. Paraca] Length = 465 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 193/474 (40%), Gaps = 28/474 (5%) Query: 1 MNPLWTFHDLLQA--IQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ L+T LLQ I G V GI+ D+R++ E F A+ G +DGHDF+ Sbjct: 1 MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ KGA VV+ + S P+ V D L A LA + R R +I +TGSV Sbjct: 61 AAAIAKGALCAVVSREFAVSHPE--FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ LS K + G+YNN IGVP TL + D DF + E+ M GEI Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP + VI + AH+ + IA AK E+ + T LN+D+ Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNRRLMSTAT 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A T G + + + + L Sbjct: 239 QVWAGTTITYGLEGGILQGELLGHETIRVEGIDLPLPLPGSHNASNFL---------AAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L ++ + +S + R + L+DE+YNA S + Sbjct: 290 AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLEST---L 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L ++ R IAVLG M E+GE S FH + N+ +++ A Sbjct: 347 AALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILADLAE--AQA 404 Query: 418 LPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + L + + L GD V+ K+SNS G R++ Sbjct: 405 MAEGAVGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458 >gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 457 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A Sbjct: 3 LTLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ A VDD L A +LA ++ +IA+TGS GKTTTK Sbjct: 62 GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L++L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLEVVR 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + L + + G + A N ++ Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L + + AL+ + R + + A ++ + YNANP +MK + S Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401 Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 402 FPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456 >gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 468 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 129/467 (27%), Positives = 220/467 (47%), Gaps = 16/467 (3%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T+ ++ A G V V I+ D+R + + F A++G H+DG F A+++ Sbjct: 5 LTWDEICTATGASVRRGGVAGDTVLPITTDTRKVVAGDLFVALRGEHFDGTAFAAEALER 64 Query: 64 GAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA V+V+ A ++ + V +D L A +A A R++ ++AITGS GK Sbjct: 65 GAAAVLVDQKTPATALTALDTARGGVLVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGK 124 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++ LS K +YNN +G+PLTL + + + E+GM +G+I L Sbjct: 125 TTTKDLTAAVLSGRGKVCRTAANYNNEVGLPLTLLGITPEDTAAVVEIGMRGMGQIAALA 184 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P I ++T + H+ IE IA AKAE+ + GT+ LN DD +++ Sbjct: 185 PITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAAMRS-- 242 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + ++G S AD + + ++ S V G+ E G H N L Sbjct: 243 SAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALAA 302 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L +L L+ ++ R + ++ +TLI+++YNA+P+SM+A++ Sbjct: 303 LAAGFVLGMTPQEMQVGLTHLTAEKMRYEVHQIGA----WTLINDAYNASPSSMRASLET 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + P GRRIAVLGDM E+G ++ H D+ + + V G +A Sbjct: 359 TAALYP---GRRIAVLGDMLELGAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTHEAAE 415 Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +++ + +++S L+DGD V+ K S ++I L Sbjct: 416 AAGCPACYHAASHADAAAYLRSHLMDGDTVLFKGSRGMRMEQIIAAL 462 >gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 202/464 (43%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I P + F G DGH+F+ A + G Sbjct: 4 TVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA+ + +IAITGS GKTTTK+ Sbjct: 64 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 122 IMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ +EIA AK EI G + E L S G Sbjct: 182 DIAIITNIGEAHIEYLGSRQEIAKAKLEITAG----LNPSGILIYPYEETLL-LSQIDGD 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS ++ + +E + + +E+ IG H N + + Sbjct: 237 FRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + AL R + +++++YN++P +++ + + Sbjct: 296 EIGIEGKKIQTALKNME---RSKSRLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMD 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 G+ + VL DM E+GELS H + AEVL I V+L G + A I Sbjct: 353 SKGK-PKYLVLADMLELGELSVLLHQESAEVLEEGTIEKVFLYGDAMKAFGAVAEDKIGQ 411 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + +T + L + + + ++VK S G ++ L+ Sbjct: 412 GKVQHFDTKESLENALLKEITGNEWILVKGSYGMGLKDVVENLI 455 >gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosospira multiformis ATCC 25196] gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 449 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 132/455 (29%), Positives = 205/455 (45%), Gaps = 26/455 (5%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G+S DSR++A E F A+ GP++DGHDFI+ A +GA +V D + IP Sbjct: 6 IDFTGVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGIP 65 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143 + V + AL +LA R R ++A+TGS GKTT KEM+ L + Sbjct: 66 LIRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEEMRTD 125 Query: 144 ------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 NN IG+PLTL R+ + + E+GM+H GEI +L+ L +P +A+IT Sbjct: 126 APDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVALITN 185 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 AH+ +E +A AK EIFEGL++ G +N DD L + + I Sbjct: 186 AGDAHIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDPHNRLWRELAGNRQIIDFGLKS 245 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 K+ +K + + + L E G H +N L + + + Sbjct: 246 KA----KVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGVSLK 301 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 T LS F +GR + TLID+ YNANP S++AA++VL EG++ Sbjct: 302 TIASGLSTFGGVKGR---MQRKCGVRGATLIDDCYNANPDSVRAALAVL----ARAEGKK 354 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 + VLGDM E+G+ + FH + + + I + G + I + M+ Sbjct: 355 VLVLGDMGELGDKGREFHEQIGDEARIAGIDELMALGDLSAYAAEKF--GIGARHFRKME 412 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L I++ +++K S R++ L Sbjct: 413 DLLANIETLPGPDVTLLIKGSRFMQMERVVKRLEA 447 >gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 445 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 222/464 (47%), Gaps = 29/464 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +L + ++G G PQ V G SIDSR + + FFA+KG +DGHDF+ A Sbjct: 1 MIA----GELAKVLRGELRG-DPQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA VV D+ + V AL +LA+ R + ++ + GSVGKT Sbjct: 56 VDRGAVGCVVERDVEHAGKFS----IKVSSTQEALRELALYRRGIFRGEVVGVAGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE++ LS+ ++ G+ N+ IG+PL + MP++VD+ + ELG S +G++ L Sbjct: 112 TTKELIHHLLSNAAASFRSEGNLNSQIGLPLVVCNMPLEVDYAVLELGASAVGDVERLVE 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P + VIT + HL +F +E++ EIF G + + + + + Sbjct: 172 VAQPKVRVITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPHY-------ALEYY 224 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + + +FG+ D K + + + E +G + + QN+L Sbjct: 225 DLPRERVTTFGE--GGDLNAGKVRLSLKGTEFEFWGEG----FSVPLLSRGVVQNVLAAF 278 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+++ L D +AL F P +GR LN G F ++D++YNANP S++ A++ L Sbjct: 279 GVLTSLGYDPRDFREALKSFTPPQGRM----NLLNFGNFFVVDDTYNANPPSVRNALTTL 334 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-LP 419 + + + +AVLGDM E+G S +H ++ ++ + I + G + + Sbjct: 335 ASLQTTSKK--VAVLGDMLELGVESGRYHAEVGKLGAELGIDVIIFHGEESKRSYEECIK 392 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + + + + + + D ++++VK S ++ Sbjct: 393 HGGNALFCDKKEDIVDELLKYMRDKNIILVKGSRGMRMEWIVEK 436 >gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] Length = 463 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 132/479 (27%), Positives = 208/479 (43%), Gaps = 27/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +L IG V +S D+R + FFA+KG ++D HD++ A Sbjct: 1 MIKLST-KELADIFSARLIG-AKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G VVV + + +P V D AL +LA R++ IAITGS GKT Sbjct: 59 VEQGCSAVVVEREC-----DVDVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + G++NN IGVPLTL R F + ELG +H GEI Sbjct: 114 TVKEMTASILQKVVQDPDAVLFTQGNFNNDIGVPLTLLRFEPKHQFAVIELGANHQGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + LV+P +A++ +A AHL F IE +A AK EI++GL G + Y+ S Sbjct: 174 YTVDLVQPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIMEYEHSVLWKKY 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295 +T + K +D+ ++ + S + + +E+ +G H N Sbjct: 234 WHEQIGDAETRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEINLPYLGLHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + + L ++ L +GR L+D++YNAN +S+ Sbjct: 294 AVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEP---CPNLLLLDDTYNANVSSL-- 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 S + + + + RI +GDM E+G S S H +A+ + N+ V G + Sbjct: 349 -KSAIDVLRQYDKFFRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVIS 407 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 DA + L +I Q V++VK + +INL+ ++F Sbjct: 408 DA----CDGVHFSDKTELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKFQ 462 >gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] Length = 447 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 140/467 (29%), Positives = 211/467 (45%), Gaps = 24/467 (5%) Query: 4 LW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +W T + A G IG V IS D+RS+ + + A+KG ++DGH ++ A Sbjct: 1 MWSDPTLQNWADAGAGELIGD--DRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGAG VVV ++ +P + D L LA R R +IA+TGSVGKT Sbjct: 59 IHKGAGAVVVQ----DALPDCPVPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +T+ MLT A G++NN IGVP T R+ + ELG + EI +L Sbjct: 115 STRAMLTEIFKLQPGLLATEGNFNNDIGVPKTWFRLTDQHQRVLLELGANAQQEIAWLGS 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPHI+++ A AH F G+E + K EI + G + LN DD + + Sbjct: 175 FSRPHISLLLNAAEAHTEGFGGLEGVRQGKGEIIDATHSEGGVVLNKDDPAYNRWLKQ-- 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + I +FG+ +AD L +K S S + + + V +G HMA N Sbjct: 233 -AGDRKIVTFGRHSDADVCLLSFKNNSHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + LS P R + LI ++YNANPAS +AAI VL Sbjct: 292 ATAWLAGVSALDIAQGLSAMQP---EPGRMEPVDSMHGGALIHDAYNANPASFRAAIDVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + + GDM E+G+ S + H ++ I H+W G L + DA Sbjct: 349 EDL----GEDTLLIAGDMAELGDESANLHREVGLYA-RGKIQHIWSVGKESLQISDAFG- 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ E+++ L + + L V+VK S S G R+++ L + Sbjct: 403 ---GHHFESIEELLAMLPAKLETETAVLVKGSRSSGLERVVDALRRK 446 >gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 453 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 129/471 (27%), Positives = 202/471 (42%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ QA+ + I + DSR IA + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAVVTLTEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEAYL------PA 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + ++ G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLIERKDSLTFNANFLEQDLDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 HV Y + + L ++ SL D +++K SNS +L+ L+ Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLM 453 >gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] Length = 453 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 143/468 (30%), Positives = 221/468 (47%), Gaps = 26/468 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ +A G +G + + DSR + P + F A+KG +DGHD+ + + Sbjct: 1 MMYLSEIAKATGGTLVGQ--DVLIQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSE 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+++ D+ A+ P V+D AL +LA R + + AITGS GKT+ K Sbjct: 59 GATAVLLSHDVGAT------PAVLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVK 112 Query: 124 EMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 EML L G+ NN IG+PLTL R+ + + E+GM+H GEI +LT Sbjct: 113 EMLAAILRVAAGADDAVLATQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP +A+I AHL +E +A AK EIFEGL G +N DDSF L ++ Sbjct: 173 RIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEGLADDGVAVINADDSFAGLWQS-- 230 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + I FG NA + S +++ + G H +N L Sbjct: 231 -LAGRRRIVRFGL--NAGDVTAGYALHSAGCDLQLSTPAGERALHLPVPGLHNIRNALAA 287 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +D + L+ F +GR + + LID++YNANPASM+AAI V Sbjct: 288 TAVALSMGVSLDAVAEGLAGFAGVKGR---LQRKPGRHGALLIDDTYNANPASMRAAIDV 344 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ S G+R+ V+GDM E+GE + H +L + + G +A Sbjct: 345 LASHS----GKRLLVVGDMGELGENEAALHAELGAYAKAAGVDALHALGRLSAGAVEAYG 400 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ET++GL + +L V+VK S R+I+LL ++ Sbjct: 401 PG--ASHHETVEGLAAALLPALDADTTVLVKGSRFMRMERVIDLLQDQ 446 >gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 452 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 125/460 (27%), Positives = 195/460 (42%), Gaps = 31/460 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + ++ Q + +N I+ D+R+I + F A+KG +DGH F A+ KGA Sbjct: 13 SLKEISQPLSNKL--------INEINTDTRNITENDIFLALKGDKFDGHLFAEKAIDKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +++N + + IP V D L A ++A R + K II ITGSVGKTTTKE+ Sbjct: 65 IALILNHKISVNSTKK-IPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSVGKTTTKEL 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L K + +YNN IGVP TL + D+ + E+ M GEI L+ + P Sbjct: 124 ISAVLGVYGKVHKTQANYNNEIGVPKTLLAITTSDDYAVIEMAMRARGEIALLSQIACPT 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I +IT + AH+ E IA AK E+ + LN+DD AK Sbjct: 184 IGIITNVGTAHIGRLGSREAIAEAKCELLAEMPTDSIAILNHDDQRLMETAAKVWQGKTI 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T G + + L+ K M+ G H A N L L + Sbjct: 244 TYGLEGGD------------ITGKVLENQILRVKGMDFPLPLPGRHNALNYLAALAVTQQ 291 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D I+ R + + L+DE+YNA SM + L + Sbjct: 292 LNLDWHPLIQG----VTVNLPQGRSQQYSLENDIILLDETYNAGLESM---KAALQLLKD 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIH 423 R +AVLG M E+G+ S H ++ E I +++ A+ + +++ Sbjct: 345 TPGKRHLAVLGTMKELGDASAQLHQEVGETAETLGIDGLYILVDDPEAQAIAQGV-KTVE 403 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 T + L + + GD ++ K+SNS G R++ Sbjct: 404 TECFPTHEQLIQRLTEIIKPGDRILFKASNSVGLNRVVEA 443 >gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Arthrospira platensis NIES-39] Length = 468 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 193/474 (40%), Gaps = 28/474 (5%) Query: 1 MNPLWTFHDLLQA--IQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ L+T LLQ I G V GI+ D+R++ E F A+ G +DGHDF+ Sbjct: 1 MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ KGA VV+ + S P+ V D L A LA + R R +I +TGSV Sbjct: 61 AAAIAKGALCAVVSREFAVSHPE--FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ LS K + G+YNN IGVP TL + D DF + E+ M GEI Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP + VI + AH+ + IA AK E+ + T LN+D+ Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNRRLMSTAT 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A T G + + + + L Sbjct: 239 QVWAGTTITYGLEGGILQGELLGHETIRVEGIDLPLPLPGSHNASNFL---------AAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L ++ + +S + R + L+DE+YNA S + Sbjct: 290 AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLEST---L 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L ++ R IAVLG M E+GE S FH + N+ +++ A Sbjct: 347 AALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILADLAE--AQA 404 Query: 418 LPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + L + + L GD V+ K+SNS G R++ Sbjct: 405 MAEGAMGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458 >gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] Length = 469 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 205/464 (44%), Gaps = 17/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + G + V +S D+R+I + A+KGP+++GHDFI A GA Sbjct: 5 TLSWIAGKVNGKLVNGNADTQVLAVSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ + ++ S+PV V+D AL L A + IAITGS GKTT KEM Sbjct: 65 SAVIASENVT-----TSLPVISVEDTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEM 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L+ A G++NN IGVPLTL R+ ++ + ELG +HLGEI + T+LV+P Sbjct: 120 CAAILARRGNVLATNGNFNNDIGVPLTLLRLEPHHEYAVMELGANHLGEIAYTTNLVKPD 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A I A +HL F + +A AK+EIF+GLEK G +N D F E + K L Sbjct: 180 VATIVNAAASHLEGFGSLLGVARAKSEIFKGLEKDGVAIVNVDSQFAEFWQGK---LKQT 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +F + D + + + N+ L ++ Sbjct: 237 KTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQLTIPGVHNVGNALVAAAL 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + R L+D++YNAN AS+ AAI LS S Sbjct: 297 TLQVGANLENVRDGLIAMQQVSGRLNVKQLTDQVRLLDDTYNANVASVNAAIDTLSSFS- 355 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ VLGDM E+GE ++ +H + E I++++ G + + Sbjct: 356 ---GIRVLVLGDMKELGEKARFYHEQVGEYAKQKGINYLYTMGVLSQSASAVFNENGG-- 410 Query: 426 YSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINLLLE 466 + ++ L ++S L D+ ++VK S S R++ + Sbjct: 411 HFSDVESLLAAMESDLLVQQRDISILVKGSRSSKMERVVEAVEA 454 >gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] Length = 469 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 178/471 (37%), Positives = 256/471 (54%), Gaps = 13/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT +A V+GISID+R++ P + F A+K DGHDF+ A Sbjct: 1 MSALWTAA---EAATATGGEATGDWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGAG +V + P+ V+DV AL L AR R++A +IAITGSVGKT Sbjct: 57 LDKGAGAALVTH--RPDGVAADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L+ +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L Sbjct: 115 STKEMLACMLADQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 RPH+A++TT+A HL F + IA KA I EGLE G LN D ++L A++ Sbjct: 175 QARPHVAMVTTVAAVHLEAFEDVAGIAREKAAIMEGLEPGGVAVLNADIDEAQVLAAEAQ 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LG+ + +++L K E + EV+ + M++ +G H A N L L Sbjct: 235 GLGVAHQWF--GESATEYKLLSTKISGEATLAEVRCGPEQMQLTIQSLGAHFAMNALGAL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ ADV A + LS++ P +GRG R A+ G L+D+SYNANP SM AA++VL Sbjct: 293 ACVAAAGADVQRAAQVLSLWSPVQGRGARVEVAMEGGKLLLLDDSYNANPTSMAAALAVL 352 Query: 361 SQIS-----PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + +GR+IA LGDM E+G + H LA++ +L I + G + L Sbjct: 353 AATPDLGADAGVKGRKIAYLGDMGELGPQEVALHAGLADLAALETIDTIHCIGPLMAHLH 412 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ALP + + T + + S L GD+V+ K S S G ++++ + + Sbjct: 413 QALPAAQRGFHYATSADVLPDLPSQLGCGDIVLAKGSLSAGLSKIVDGIRD 463 >gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] Length = 460 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 198/466 (42%), Gaps = 18/466 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ + I G + G+S DSR+I + + G +DG FI KG Sbjct: 5 SLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123 A + +TD ++SIP V+D L +L LA A R +I ITGS GKTTTK Sbjct: 65 ASAFLADTDCKIK-NNISIPYIRVEDTLKSLQDLARAYRSELKNTKVIGITGSNGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++L L K IG+ NN IGVP T+ + D + I E+G G+I T++ R Sbjct: 124 DLLYEVLKEKYKVQKTIGNLNNEIGVPKTILSLDEDTNIAIVEMGTDSFGDISLTTNISR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +HL E I AK EI EGL + G N DD + K S Sbjct: 184 PDIAIITNIGDSHLEKLKTKEGILKAKMEIVEGLSQDGYFIYNGDDPTMK--KEISSYEV 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + SFG+ + DF ++ + + +G H N +T+ + Sbjct: 242 KQKMISFGEEDDNDFVVKSSDDNRGKVSFTHDGE----TYTIPLLGSHNIYNGGVTVLVS 297 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 S+L D K LS P R ++D+ Y +NP S+++ + + Sbjct: 298 SLLGLSTDQIKKGLSEVTPANNRSSIIEFEGFD----VLDDCYKSNPQSLRSGLKTTKLL 353 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + I VLGDM E+G+ H + + +I + G + + + Sbjct: 354 GGYDSK--ILVLGDMLELGDSEDDLHYQVGSEIDPKDIDYCLFFGSLSKHMYEGALENFS 411 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + L ++S + +V VK S+ +I + + Sbjct: 412 KDRIFHFTSKNDLIDKLKSLITKSSLVFVKGSHGMHMEEIIESISK 457 >gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 486 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H++ + + + + + I DSR+I+ + F +KG DGH+FI A Sbjct: 34 LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 92 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P V D L A LA + +IA+TGS GKTTTK Sbjct: 93 GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 146 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 147 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAK 206 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AHL F E+IA K +I +G+ G + D L A + Sbjct: 207 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 266 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D +L+ + E+ + + ++ G + A N ++ + Sbjct: 267 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 316 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + AL R + + A ++ + YNANP +M+ + S I Sbjct: 317 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 373 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IA+L DM E+GE S H + + +I + G + L + Sbjct: 374 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 433 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V++ + D L ++ +L + D +++K SNS +++++L Sbjct: 434 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 484 >gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia proteamaculans 568] gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia proteamaculans 568] Length = 453 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 206/471 (43%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + IG + ++ D+R + F A+KG +D HDF + Sbjct: 1 MIPV-SLRTLADVLSAELIG--ADCQIVEVTTDTRQVTTGCLFVALKGERFDAHDFAVD- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ + +P V D AL +LA R + ++A+TGS GKT Sbjct: 57 ----AVAAGAGALLVSKRLLVEVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L + G++NN IGVPLTL R+ DF + ELG +H+GEI + T Sbjct: 113 SVKEMAAAILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL G LN D++ + ++ Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAILNADNNDWPHWQSMLD 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S ++ DF + + + + + ++ G H N L Sbjct: 233 GKTVWR-FSPQAAEGVDFFASDVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A ++ + L GR L+D+SYNAN SM AA VL Sbjct: 292 ALAMSAGASLEAVRQGLKQLQAVPGRLF---PIALSDHQLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G ++ H + E L + V G L +A Sbjct: 349 AEMP----GYRVMVVGDMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQVLTEA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 S + + + + + L + V V++K S S +++ L E+ P Sbjct: 402 SGNGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQEKAP 452 >gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hyphomicrobium denitrificans ATCC 51888] gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hyphomicrobium denitrificans ATCC 51888] Length = 467 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 192/470 (40%), Positives = 261/470 (55%), Gaps = 7/470 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWTF +L A+ G + V GISID+R++ + F A+K DGHDF+ A Sbjct: 1 MQPLWTFSEL-SAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALK-DQRDGHDFVSPA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVG 118 + GA +V+ V + +F V D L AL L AAR R A +IA+TGS G Sbjct: 59 FKAGAAAALVSEGYV--RRAEDGALFRVSDTLKALEALGRAARDRLSPDARVIAVTGSAG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TKEML LS + T+A SYNNH GVPLTLARMP + FG+FE+GM+H GEIR L Sbjct: 117 KTGTKEMLRACLSHLGVTHASEKSYNNHWGVPLTLARMPRETRFGVFEIGMNHAGEIRPL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRPH A+ITT+ HL +F +E IA AK EIFEGL GT + +D+ LKA Sbjct: 177 TKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGTAIIKFDNPHAARLKAI 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + LG +FG S AD + S + V+L + + + G H+A+N L Sbjct: 237 AERLGA-KAVTFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMPGRHIAENALA 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + AD++TA+ L+ P GRG R L+ G LIDESYNANPASM+AA++ Sbjct: 296 VAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYNANPASMRAALA 355 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ + RRIAVLGDM E+G + H L + + I ++ G H+ L DAL Sbjct: 356 TLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGIDVIFACGPHMKGLYDAL 415 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 P+S Y++T L + S L GD V+VK+SN ++ L ++ Sbjct: 416 PKSKRGGYAQTSSLLQPAVLSELRGGDAVMVKASNGTRLGAVVEALKSKY 465 >gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] Length = 455 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 200/464 (43%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L+ + G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 1 MLKPMSLSQLVPLLNGQQIG--ADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVEREVA----DVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAAEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP + VI AH+ F G E+I AK EI EGL + G LN DD F KA++ Sbjct: 175 LTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFATWKARAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + + + + EV + N+ L Sbjct: 235 AHKVISFARSDARAD----FHASAIGRDARGCPSFQLHGAGEVAQVQLNVLGEHNVSNAL 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A + + + R + +ID+SYNANP SM AAI +L Sbjct: 291 AAAAAAHAVGLSLAGIAAGLAAVQPVKGRTVAQIAPSGVRVIDDSYNANPTSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ +A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMKHAVEAFGA 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L + + +++K S S ++ L Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447 >gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894] Length = 452 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 203/463 (43%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + G G ++ ++ D+R + P F A+KG +D HDF A GA Sbjct: 5 SLSQLAAILNGELHGADAD--IDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D A +LA R + A ++A+TGS GKT+ KEM Sbjct: 63 GALLVSRKL-----DIDLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L T G+ NN IGVP+TL R+ + ++ + ELG +H GEI + L RP Sbjct: 118 TAAILGECGNTLYTAGNLNNDIGVPMTLLRLTPEHEYAVIELGANHQGEIAWTVSLTRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL G LN D++ + ++ + Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPANGIAILNADNNDWLNWQSVIGDRKVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +DF S + ++ ++V+ G H N L + Sbjct: 238 R--FSPNLDTSDFSATNIHITSHGTEFTLRTPTGDVDVLLPLPGRHNIANALAASALAMA 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A + L+ GR N L+D+SYNAN SM AA VLS++ Sbjct: 296 VGAPLQAIKAGLAKLKAVPGRLFPVHLGEN---QLLLDDSYNANVGSMTAAAQVLSEMP- 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GDM E+G+ +++ H + E I V G + A S Sbjct: 352 ---GYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRA---SGVGE 405 Query: 426 YSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466 + + +++ + + ++ +VK S S ++ L E Sbjct: 406 HFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQE 448 >gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 457 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + +N I DSR I + F +KG DGHDFI A Sbjct: 3 LTLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ A VDD L A +LA ++ +IA+TGS GKTTTK Sbjct: 62 GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ +TY G+YNN IG+P T MP D + + E+G H+G+I L++L + Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241 P AV+T I AHL F ++IA K ++ +G+ + + D L + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDLFLPSNLEVVR 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + L + + G + A N ++ Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L + + AL+ + R + + A ++ + YNANP +MK + S Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 I + G++IAVL DM E+GE S H + L+ I V G + L + Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401 Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + D + I+ SL + D +++K SNS +++ L + Sbjct: 402 FPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456 >gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 482 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 124/487 (25%), Positives = 208/487 (42%), Gaps = 28/487 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + ++G G Q +G IDSR + E FFA+ G DGHD+I A QK Sbjct: 1 MWDSQRIADLVRGELTG-DSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQK 59 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA +V+ + + + +P + V+ L A+ LA A R A ++AITGS GK Sbjct: 60 GASVVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ LS +T+ + + NN +G+P+T+ + + + I E+GM LG+I FL Sbjct: 120 TTTKDMVAAVLSEKYRTHKNLENQNNELGLPMTILKATENTEVLILEMGMRGLGQIAFLC 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P I VIT I H+ E IA AK E+ E L +TG+ LN +D + +A+ Sbjct: 180 DIACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWSVK-QAEH 238 Query: 240 HALGIKTIYSFGKSKNADFQ------------LRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + G+ D + + + + + ++ V Sbjct: 239 DSHRTFFYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSVTVR 298 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + N+L L +S+ + + E R G TLI + YN Sbjct: 299 LPLPGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLELQPGPGGSTLISDVYN 358 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANP SM + L + G +A+LG+M E+G+ ++ H ++ + ++ IS + Sbjct: 359 ANPTSM---KASLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITV 415 Query: 408 GFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRL 460 G + +H +G + L G V++K+S + Sbjct: 416 GPLAEEIARGALEKGLSPQRIHSFPEREGAIKKARELLAGLNQGTWVLIKASRGMKMEEV 475 Query: 461 INLLLEE 467 L ++ Sbjct: 476 TRALRKD 482 >gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] Length = 454 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 202/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + +G G + ++ +S D+R+I F A+ G +D H+F A Sbjct: 1 MIKV-TLSQIADITRGERFGD--ELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAG ++V + +++P V D AL + A K +AITGS GKT Sbjct: 58 VDAGAGALLVEKRL-----DVNVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL G +N D + Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGIAIVNLDSNGEAKWDEVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + +ADF + S + + +G N+ + Sbjct: 233 DKKVIT--FSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+R +LG+M E+GE S + H + E + HV G + D Sbjct: 351 AAFP----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISDL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ET + +I+ L + ++VK +N + + L E + Sbjct: 404 -CQGIHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454 >gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] Length = 455 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H++ + + + + + I DSR+I+ + F +KG DGH+FI A Sbjct: 3 LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P V D L A LA + +IA+TGS GKTTTK Sbjct: 62 GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AHL F E+IA K +I +G+ G + D L A + Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D +L+ + E+ + + ++ G + A N ++ + Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + AL R + + A ++ + YNANP +M+ + S I Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IA+L DM E+GE S H + + +I + G + L + Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V++ + D L ++ +L + D +++K SNS +++++L Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 453 >gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli] gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli K-12] Length = 452 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 214/468 (45%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 AG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGAAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPERALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++ + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] Length = 455 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 209/464 (45%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L A+ G IG G+SIDSRS+ + F A+ GP +DGHD++ Sbjct: 1 MLKPLSLSQLTTALSGRQIG--ADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVEREVA----DVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G E+I AK EI EGL + G LN DD F + A++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + + + ++ G++++V + +G H N L Sbjct: 235 SHKVVSFARSNPKADFHATDIG-RDARGCPSFKLHGAGETVDVQLNVLGEHNVSNALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ L+ P +GR + +ID+SYNANP+SM AAI +L Sbjct: 294 AAAHAVGLSLNGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPSSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAFGA 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L + + +++K S S ++ L Sbjct: 406 NGR--HFATQAELIDAVSAEHASDTTILIKGSRSAAMENVVAAL 447 >gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] Length = 470 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 208/464 (44%), Gaps = 16/464 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + GI D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A D+ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNIDGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFVTNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + AL R +++++YN++P ++K + + Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTNSGARILNDAYNSSPTALKTVLKTFMHMD 365 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421 +G+ ++ VL DM E+G+LS H + AEVL I+ ++L G + A +A Sbjct: 366 SNGK-QKYLVLADMLELGDLSTKLHQESAEVLENDTIAKIFLYGDAMKAFGAVAEAKIGQ 424 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + +T + L + + S + + ++VK S G ++ L+ Sbjct: 425 GKLQHFDTKESLEMALLSEITGNEWILVKGSYGMGLKDVVENLI 468 >gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 458 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 211/470 (44%), Gaps = 24/470 (5%) Query: 6 TFHDLLQAIQGHSIG--IVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + +L+Q G + + I DSR + F + G +DGHD+I Sbjct: 4 SIQELVQETGGICLNSEDSGNTVIEEIFTDSRQKVNKG-LFVPLIGEKFDGHDYIDDVKA 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + + + V+D AL +A + IIAITGSVGKTTT Sbjct: 63 MGALATLTSKKNDSVH--QDLITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L + K + +G+YNN IGVP T+ + D + E+GM+H GE+ LT +V Sbjct: 121 KEMVAAVLETTLKVHKTVGNYNNEIGVPKTMFALSEDDQVSVIEMGMNHFGELSRLTSVV 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P AVIT I AH+ + E I AK EI EGL+ GT+ +N D+ Sbjct: 181 KPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKPEGTVIINGDEPLL-------MGK 233 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +FG D+ + + V ++ G HMA N L+ + I Sbjct: 234 KQDNWITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPSPGVHMALNALIAIII 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D IK ++ + K N G FT+ID++YNAN SM AA+ VL Sbjct: 294 AEKLEIPRDKIIKGIANYK----SEKMRMNITNVGNFTVIDDTYNANYDSMVAAMKVLGN 349 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418 IA+LGD+ E+G+ S+S H +L E ++ I+ V+ G + DA+ Sbjct: 350 YLTKNRK--IAILGDIFELGKYSESIHRNLGEYIASSRINCVFTIGDAAAYITDAIINSP 407 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ + + + + GD+V+VK+S ++ + ++ Sbjct: 408 NNKNVTSKHFKNKELFIKEWSQYINAGDIVLVKASRGMHLEEVVKAMRKD 457 >gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] Length = 456 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 212/473 (44%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF+++ ++ + P + DSR I + F +KG DGHDFI A + Sbjct: 3 LTFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P VDDVL AL +LA + K + A+TGS GKTTTK Sbjct: 62 GAVATLSEKELD------DYPSILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + + Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQ 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AHL F EIA K +I G+++ G + + D + L ++ + + Sbjct: 176 PKVGIVTLIGEAHLEFFKSRHEIAKGKMQIANGMKEGGLLIVPADKIINDFLPSQQNVVR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D + K + + + + G + A N ++ + Sbjct: 236 ----------FGPDEDIFLTKLEERKDSLTFETNFLDNAIDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D KA + R + + ++ + YNANP +M+ + S I Sbjct: 286 LKEGVTQDKIQKAFATLELTRNRTEWKKAKNGAD---ILSDVYNANPTAMRLILETFSTI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALP 419 + +GR++AVL DM E+G S+ H + L+ +S ++L G + AL K+ P Sbjct: 343 PFNEKGRKLAVLADMKELGADSKQMHGAMITSLNPEILSEIFLYGEDMAALFAYAKEIFP 402 Query: 420 RSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + + L ++ +L D +++K SNS L+ L E Sbjct: 403 PGKAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEELENE 455 >gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 473 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 129/478 (26%), Positives = 199/478 (41%), Gaps = 22/478 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + Q G P+ V G + DSR + P F AI+G DGH F Sbjct: 1 MIPLP-LRLVAQLAGGGLADVPDPERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSV 117 AV GA V+ + + +P VDD + L +LA +I ITGS Sbjct: 60 QAVSAGAVAVLADHP-------VGVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSS 112 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++ L+ + T A GS N +G+PLT+ R D F + E +G I + Sbjct: 113 GKTSTKDLGAQVLARLGPTVAPTGSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAY 172 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P I V+ + AHL F E IA AK E+ E L GT LN DD ++ Sbjct: 173 LCRIAPPRIGVVLNVGSAHLGEFGSREAIAQAKGELVEALPADGTAVLNADDPLVLGMRH 232 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ A + +FG S +AD + + + + + + Sbjct: 233 RTRA----RVVTFGTSADADVRATEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHVSN 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + A ++ + R T+I+++YNANP SM AA+ Sbjct: 289 ALAVATVAWVLGLGAEEIAAALREARPLSRWRMEVTTRDDGVTVINDAYNANPESMTAAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L+ + RIAVLG M E+G + + H ++ E + + + + G + D Sbjct: 349 TALAAATAAR---RIAVLGPMAELGPAAPAAHAEVGETAARVGVDWLIVVGADATPIADG 405 Query: 418 LPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 R V + +L GDVVV+K+S S G ++ LL + PA+ Sbjct: 406 ARRGGLAAEAVTVVPDAAAATALLTPALRAGDVVVIKASRSYGLEQVAAALLAQTPAV 463 >gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] Length = 452 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 206/464 (44%), Gaps = 21/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T L G G ++ ++ D+R + F A+KG +D HDF A G Sbjct: 4 FTLSQLAAIAHGERQG--SDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG ++V+ + +P V+D A +LA R + ++A+TGS GKT+ KE Sbjct: 62 AGALLVSRPLA-----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M LS T G+ NN IGVP+TL R+ + + + ELG +H GEI + L RP Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++ +A AHL F + +A AK EI+ GL + G LN D++ + +A + Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + N+DF + S + +Q +++V+ G H N L + Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + AD+ L+ GR R + L+D+SYNAN SM AA+ VLS++ Sbjct: 295 AVGADLAAVKAGLAQLQAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R V+GDM E+G S + H ++ E + V G + A S Sbjct: 352 ----GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRA---SGVG 404 Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + ++ L + + ++VK S S ++ L E Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448 >gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] Length = 464 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 200/467 (42%), Gaps = 15/467 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +F +++ A+ G I +S D+R I ++ F A+KG ++G+ + A KG Sbjct: 4 MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKG 63 Query: 65 AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +V+ V V D AL LA + + +I ITGS GKTTTK Sbjct: 64 ASICIVDEVYFKKSEINECTSVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++T LS+ K + G+ NN IG+P + R+ D + E+GM++ GEI + R Sbjct: 124 DLITSVLSAKFKVFKTEGNLNNQIGLPHMIFRLNNSYDVAVLEMGMNNRGEIHSMAKAAR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT + AH+ N E I +AK EI + K T+ +N D+ LK Sbjct: 184 PDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVINSDNDMLSNLKEDR---- 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I G +N+D + + + ME + L + Sbjct: 240 -FNIRRVGLEENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGKYNVLNSLLAVA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + + + C + +I++SYNANP SMKAAI VL Sbjct: 299 CGRILNMTYGEIREGLKNIETTAMRMEICKGKKFN--VINDSYNANPESMKAAIDVLKNF 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PR 420 R+AVLG M E+G+ S H ++ + I + G + K + Sbjct: 357 KSKR---RVAVLGTMGELGDESCRMHEEVGKYAGENGIDILIALGEYAEDFKRGFQVTNK 413 Query: 421 SIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +T F ++ +V+GD V++K+S F + L + Sbjct: 414 NGKCISFDTYAETLEFLLKKCIVEGDTVLIKASRVMKFETIAEELKK 460 >gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] Length = 492 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 134/482 (27%), Positives = 212/482 (43%), Gaps = 20/482 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T +L +A+ G + P ++ DSR + F A G DGH F+ Sbjct: 1 MIPI-TAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVP 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAIT 114 A GA L + +++ G+ P V DV+ A+ LA R T++A+T Sbjct: 60 QAAAAGAVLNLTEREVLDDTGAP-YPSVVVADVVQAMGALASHVLQRLRAAHPVTVVAVT 118 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTTK++L ++ T A SYN +GVPLT+ D +F + E+G +H+G Sbjct: 119 GSVGKTTTKDLLHGIFAAEGPTVAPRNSYNGEVGVPLTVFTAEQDTEFFVVEMGATHIGN 178 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 IR+L +VRP + + + AH F G+E IA AK E+ E L GT LN DD+ Sbjct: 179 IRYLCEMVRPDVGAVLCVGSAHAGEFGGVENIARAKGEMVECLAPEGTAVLNDDDARVRP 238 Query: 235 LKAKSHALGIKTIY--SFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ ++ A + + D ++ ++ H Sbjct: 239 MRERTTARVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSFTLHFPDGSAFPVHSRLI 298 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + + A V A + R T+++++YNANP Sbjct: 299 GVHHVTNLLAAASVAWAAGVAPERIAAGLEGTGARSRWRMERTERSDGVTVVNDAYNANP 358 Query: 351 ASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 SMKAA+ L+Q+ + H R IAV+G M E+G+ + S H DL ++L NISHV Sbjct: 359 QSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAHADLGQLLVRLNISHVVA 418 Query: 407 SGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 G + A + + +++ L GD+V++KSSN+ G L + Sbjct: 419 VGDLARPVYTAATLEGSWGEEALWVPDAEAAEEHLRAVLRPGDIVLLKSSNAAGLNHLGD 478 Query: 463 LL 464 + Sbjct: 479 RI 480 >gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] Length = 457 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 127/469 (27%), Positives = 210/469 (44%), Gaps = 23/469 (4%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G I G +N +S D+R++ F A+ G +D HDF AV+ Sbjct: 5 SLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVQRKL-----DLNITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I+ + AK EIF+GL T +N + + + K A Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWKD-VLADK 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S F ++ ++Q +++V IG H N L + Sbjct: 239 NVLTFSESDDTADYFATNIRINEQGEACFDMQTPQGAIDVELGIIGQHNVANALAAAALS 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 A + L+ +GR + + + N LID+SYNA+ +M +++ Sbjct: 299 IQFGATLAEIKSGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +G+R +LG+M E+G+ S + H + E + + HV G + + + Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407 Query: 424 VHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 + T + + I+ L ++VK +NS G ++ L E F Sbjct: 408 GTHFATHEAMIAHIEQHLSLPENAPHTLLVKGANSAGMSKIAAALKENF 456 >gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio parahaemolyticus 10329] Length = 454 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 200/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G G ++ +S D+R+I F A+ G +D H+F A Sbjct: 1 MIKV-TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GAG ++V + ++ P V D AL +LA + +AITGS GKT Sbjct: 58 SEAGAGALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F IE + AK EI++GL+ G +N D + L ++ Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDALWQSVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + ADF E + +G N+ + Sbjct: 233 DKKVIT--FSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 GAFH----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 H + ET + +I+ L D ++VK +N + + L E F Sbjct: 404 -CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454 >gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc fallax KCTC 3537] Length = 451 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 216/467 (46%), Gaps = 25/467 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + + G ++G++ DSR + + F A+ + DGHD+I +A+ GA Sbjct: 4 TLEKLAEVLNAPFQGKD-SVAISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENALANGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V++ P VDD L A+ KL R + ++AITGS GKTTTK+M Sbjct: 62 HAVLVDSQH---QLKEDWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDM 118 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + +T+ +YNN IGVP+TL MP + I ELGM G++ L+HLV P Sbjct: 119 AAEIANQQYRTFKTPENYNNEIGVPMTLLSMPESTEVLIVELGMDRPGQLTVLSHLVEPD 178 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I AH+ F IA AK EI GL+ GT+ E L + + + Sbjct: 179 IAIITMIGEAHIEFFKTRRNIAKAKLEIINGLKAEGTLI----IPNDEPLLTQEISHIEQ 234 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG +AD + QS + Q ++ + N++ L ++ Sbjct: 235 HVKTFGT-IDADVNATDISVENNQSQFNINQQKFAIPM-------LGRYNIMNALAAITA 286 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A + R T+I + YN+NP ++KA ++ L +S Sbjct: 287 GNLLHIDLKNAQKALLDFDLTKNRTEILHTTHGVTIISDVYNSNPTAVKAVLATL--VSR 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPR 420 +G+R VLGDM E+G+ + H LAE + +I V+L G + L+ + Sbjct: 345 EVQGKRYVVLGDMLELGQQAGIMHAGLAESVQESHIDGVYLVGELMRKHLYPILQKHFDQ 404 Query: 421 SIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + Y++ +D L + GDV+++K+S+ R+++ L++ Sbjct: 405 TQLHQYAKDQLDDLVSDLNKLGQQGDVMLLKASHGIHLERVVDELMK 451 >gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris StLB046] Length = 456 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 134/464 (28%), Positives = 220/464 (47%), Gaps = 17/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + + + P+ V G+SID+R+I + F +G +GH F+ A +KGA Sbjct: 4 SLQQIAEWLTIE-NQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + +P+ V+D AL K+A R +AT I ITGS GKT++K++ Sbjct: 63 AASLWM--IDEPNPPAHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTSSKDI 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L ALS K IG++NN +G+P+T+ ++ D + + E+GMS GEI FLT+L RPH Sbjct: 121 LAGALSPYFKVQKTIGNFNNQLGLPITILQLDEDTEVSVLEMGMSGFGEIEFLTNLARPH 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AH+ + E IA AK EI +GL + G +F + D+ + L AK+ L Sbjct: 181 YAIITNIGEAHMQDLGSREGIAKAKFEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKT- 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG S+ + + K ++ S + +G H +N L + + Sbjct: 240 --QAFGFSQELNLAASQIKATAQGSS-FHVEGLIQGDFFISVLGEHQVKNTLSAMLVSKS 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + +AL + R + G I+++YNA P SM AAI + Q + Sbjct: 297 LGLTDEQIREALKKVVLTDMRM----QLVPVGDLLFINDAYNAAPTSMHAAIQFVEQTTI 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 E VLGDM E+G + H +A + IS+V L G + L + L + Sbjct: 353 RNEKW--LVLGDMLELGNEEKKMHEGIAGHIHPEEISYVCLYGPRMKWLYNKLQETFDAE 410 Query: 426 Y-SETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + + IQS + +++VK S ++I+ + Sbjct: 411 HLVYSENEYAPIIEKIQSHATNESILLVKGSRGMKLEKIIHSIE 454 >gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] Length = 449 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L + N + +S+ + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAVLGITI---SNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMFINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V I H +N L Sbjct: 232 KLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia rickettsii] gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 449 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L + N + +S+ + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAVLGITI---SNSINCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHQGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V I H +N L Sbjct: 232 NLSITDIHSFGRSAKTSAELMLYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] Length = 449 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 151/463 (32%), Positives = 242/463 (52%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ N + +S+ + + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAALGITI---SNSINCNEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIISKRVE---INDKYKIILVDDCFEALQKIALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L ++L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVSLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V I H +N L Sbjct: 232 NLSITDIHSFGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGEM----INIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L + I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELIMHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2] Length = 471 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 202/466 (43%), Gaps = 19/466 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I G G V+ +S D+R+I + A+KG +++GH+F A GA Sbjct: 5 TLSWIASQIDGKLDGQ--DCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++ + + ++SIPV V+D AL L A + IAITGS GKTT KEM Sbjct: 63 SAIIASEPV-----NVSIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L A G++NN IGVPLTL R+ ++ + ELG +HLGEI + T+LV+P Sbjct: 118 CAAILERRGSVLATNGNFNNDIGVPLTLLRLEHHHEYAVMELGANHLGEIAYTTNLVKPD 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A I A +HL F + +A AK+EIF+GL +GT +N D F + + K L K Sbjct: 178 VATIVNAAASHLEGFGSLLGVARAKSEIFKGLGDSGTAIVNVDSQFADFWQGK---LKQK 234 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +F + + + + N+ L ++ Sbjct: 235 RVLTFSPMQKNEADFTAEDIIVGLDGCAAFQLCSNEGEAAIQLIIPGIHNVGNVLVAAAL 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 T + R L+D++YNAN AS+ AAI LS S Sbjct: 295 TMQLGATLENVRDGLLAMKQVKGRLNVKTLGSQVRLLDDTYNANVASVNAAIDTLSTFS- 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIH 423 G + +LGDM E+GE ++ +H + I +++ G + + Sbjct: 354 ---GINVLILGDMKELGEKARFYHEQVGNYALSKGIDYLYSFGVLSQSASAVFDAAPGKN 410 Query: 424 VHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLLE 466 + +D L ++ L D+ ++VK S S R++ + Sbjct: 411 GEHFTDIDSLVSALEQDLQVEQQDISILVKGSRSSRMERVVEAIEA 456 >gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 457 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA VV+ + S+SIP V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGAVAVVIQQE----NSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM +S + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAASSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDVWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL RI + DM E+GE S + H ++ + + N+ V G + D Sbjct: 346 IDVLKSYDA----FRILCVADMKELGENSLAIHREVGQYVKSSNLDLVCSYGNESAVISD 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ + +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKVDMVDFLVPLIETQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] Length = 454 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 201/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + +G G ++ +S D+R+I F A+ G +D H+F A Sbjct: 1 MIKV-TLSQIADITRGERFGD--DLLIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAG ++V + +++P V D AL + A K +AITGS GKT Sbjct: 58 VDAGAGALLVEKRL-----DVNVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL G +N D + Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGIAIVNLDSNGEAKWDEVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + +ADF + S + + +G N+ + Sbjct: 233 DKKVIT--FSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+R +LG+M E+GE S + H + E + HV G + D Sbjct: 351 AAFP----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISDL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ET + +I+ L + ++VK +N + + L E + Sbjct: 404 -CQGIHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454 >gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophobacter fumaroxidans MPOB] gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 463 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 12/463 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 WT ++ A++G + P V+ IS D+RS+ + F A+ G +DGHDFI AV+KG Sbjct: 3 WTVAQIVDAVRGRLMAGDPALPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKG 62 Query: 65 AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +VVV + ++ + S+ V VDD L AL +LA R R + ITGS GKT+TK Sbjct: 63 AAVVVVASGRGEGAVRAGSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L L G+ NN IGVPLTL M + + E+G++ GE+ L + Sbjct: 123 ELLAAILEHRHGILKNRGNLNNQIGVPLTLLTMDPTHEAAVIEMGINVPGEMARLVEIAG 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + +IT I PAHL ++ I K +++ L+ G +N DD + A Sbjct: 183 PTLGLITNIQPAHLEGLGSLDGILKEKGRLWDALDAEGIAVVNLDDQRLRAYSKRLAAR- 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S + + + + + + L +++ VV +G H +N L Sbjct: 242 -TVTCSVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAAA 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L+ + P R + LID++YNANP SM AA+ Sbjct: 301 WAMGEPGEAISAGLAAYRPVGQRMQIRHMEDG---RVLIDDTYNANPESMLAAVRAALA- 356 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 IAVLG+M E+G S + H +L + +S + G + + + Sbjct: 357 -VCRGKPCIAVLGEMRELGADSAALHRELGRRIGAMGLSGLITLGELAARIGEGAVEAGM 415 Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++++ D + +++ +D ++VK S R++ Sbjct: 416 KPAACRHAKSHDQVVEWLRERKIDASWILVKGSRGMTMERVVE 458 >gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] Length = 466 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 203/471 (43%), Gaps = 27/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + ++ + + + VNG I+ D+R++ P + F A++G +DGHD+ Sbjct: 1 MPCQLSLTQFIEVLAATPVNLSVPMTVNGVYGITTDTRNLEPGQIFLALRGETFDGHDYA 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A++KGA V+ N D + IP VDD L A +LA R + +IA+TGS Sbjct: 61 EVAIKKGAIAVIANRDQGYHL--QDIPQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSA 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ LS+ +YNN IGVP TL + + D+ + E+ M G+I Sbjct: 119 GKTTTKELIAAVLSTQGNILKTQANYNNEIGVPKTLLELDSNHDYAVIEMAMRGSGQIAL 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP I VIT + AH+ + IA AK E+ + T LN+D+ A Sbjct: 179 LTQIARPTIGVITNVGTAHIGLLGSEDAIAKAKCELLAQMPDTSMAILNHDNQRLMDTAA 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 T G + +L + G H A N L Sbjct: 239 TVWQGETLTFGLNGGD------------VQGKLIDLFRLMVDGITFPLPLPGEHNALNYL 286 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + L D K LS + G R + ++DE+YNA +M I Sbjct: 287 AALAVAKHLQIDWTPLRKGLS----VQMSGGRSQRYELPNDIVILDETYNAGFEAM---I 339 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415 + L ++ R IA+LG M E+G+ S+ H + + + V+++ A+ Sbjct: 340 AALHLLAQTPGKRHIAILGSMKELGDHSEQLHQQVGQKAQQLQLDAVFITLKDREAEAIT 399 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++E D L + + GD ++ K+S S G R+++ E Sbjct: 400 RGISALPSEGFAED-DALVQHLTEFVQPGDRLLFKASRSVGLDRVLHQFRE 449 >gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9] gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9] Length = 452 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 132/466 (28%), Positives = 203/466 (43%), Gaps = 23/466 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T H++ +A+ G + DSR+I + F A+KG +D HDF+ + + Sbjct: 1 MLTLHEVAEALFAVRQGD--NTGFTRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLAR 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV D P+ V D AL +LA R R + ITGS GKTT K Sbjct: 59 GAAGAVVRCDFDLP----GAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVK 114 Query: 124 EMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EML + A G++NN IG+PLTL + + E+GM+H GE+ +L+ Sbjct: 115 EMLRGMLAQWLGDEAVLATGGNFNNDIGMPLTLLGLRDTHRAAVIEMGMNHAGELTYLSG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP +A++ AH+ +F +E IA AKAEIF GL G +N DD +L A + Sbjct: 175 LARPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAGLAADGVAVINRDDPNRDLFVAAAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I D + ++ S + + V+ G HM N L Sbjct: 235 GRRIVEFG----LAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAAC 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + S + + + L F GR R T+ID++YNANP S++AAI+VL Sbjct: 291 AVASAMGVPLPAMVAGLQAFAGVPGRLAFRRAVSG---LTVIDDTYNANPDSVRAAIAVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRR V GD+ E+GE + + H ++ + + + G A Sbjct: 348 A----ARSGRRWLVFGDLGELGEGAPALHAEIGQAAKAAGLDGLVTLGTVSREAAAAFGP 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++++ + + L D V+VK S R++ L Sbjct: 404 G--ALACDSVEAVLEALAP-LGAADSVLVKGSRFMKMERVVAALTA 446 >gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 442 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 214/472 (45%), Gaps = 36/472 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN ++ + Q + + + V G+S DSR + + F A+ + DGHD++ A Sbjct: 1 MN--YSVKKIGQILNATT--QIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ IP V D L AL +L R + ++AITGS GKT Sbjct: 56 LTKGATAVLVDDRH---QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M + + S KT+ ++NN IGVPLTL MP D + + ELGM LG++ L+ Sbjct: 113 TTKDMASAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDDTEVLVVELGMDRLGQLTTLSE 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P IA+IT I AH+ F E IA AK EI +GL+ GT+ + YD+ ++ Sbjct: 173 LVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLIPYDEPLL------TN 226 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + +FG+ + + I N++ L Sbjct: 227 AQVKQNVQTFGQDIKDINSSSSKTI-------------FTYQNTRFAIPLLGRYNIMNAL 273 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +S A + R LI + YN+NP ++ A ++ L Sbjct: 274 AAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLATL 333 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKD 416 I + VLGDM E+GE + H LAE + N+ V+L G + + Sbjct: 334 KIIPAT---HKYVVLGDMLELGEQAARLHACLAETVINANVDGVYLVGPLMNKYLYPILQ 390 Query: 417 ALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S H+H ET + L +Q+ +GDV+++K+S+ ++N L++ Sbjct: 391 RRFDSAHLHQYETDQLAELIKDLQTLGENGDVILLKASHGIHLENVVNALVK 442 >gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] Length = 455 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H++ + + + + + I DSR+I+ + F +KG DGH+FI A Sbjct: 3 LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P V D L A LA + +IA+TGS GKTTTK Sbjct: 62 GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AHL F E+IA K +I +G+ G + D L A + Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D +L+ + E+ + + ++ G + A N ++ + Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + AL R + + A ++ + YNANP +M+ + S I Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IA+L DM E+GE S H + + +I + G + L + Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V++ + D L ++ +L + D +++K SNS +++++L Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 453 >gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 483 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 126/470 (26%), Positives = 211/470 (44%), Gaps = 20/470 (4%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++ +AI I V +S DSR + F ++G H DGH ++ A Sbjct: 27 MKLAEIAKAINAQNEIEQWKDIEVTSVSFDSRHLERGALFIPLQGAH-DGHQYVETAFTN 85 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +D + + PV V D L AL +L + ++A+TGS GKTTTK Sbjct: 86 GAAATLWASDH--ELTNNGHPVLVVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTK 143 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ ++NN IGVP+TL M + + + E+GM G++ FL+ LV Sbjct: 144 DMIASILSTQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVS 203 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AH+ F + IA AK EI GL++ G + + D+ L + A Sbjct: 204 PDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLLVYDGDEP----LLNERAAKV 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ D +S + + +G + N L + + Sbjct: 260 AQQTSRFGRQLTDDLYATSVTAGP-RSISFKVNEWPDEQFTIPMVGEYNVNNALAAMVVA 318 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L AL+ E R ++ ++ + YN+NP + K + L+ + Sbjct: 319 KRLHISPAHIKTALAN---VELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAAM 375 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418 GRRIAVLGDM E+G+ + H LA ++ I V+L G ++ L+ L Sbjct: 376 PVQ--GRRIAVLGDMLELGDAAPRLHASLATEINPAQIQEVYLIGTEMVHLQSKLLEQGY 433 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +IH +++ + L +++ L D+V++K+S+ +++ + E Sbjct: 434 PATAIHYYHANQLGQLTATLEADLTASDMVLLKASHGLHLEQVLAAIKER 483 >gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 442 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 214/472 (45%), Gaps = 36/472 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN ++ + Q + + + V G+S DSR + + F A+ + DGHD++ A Sbjct: 1 MN--YSVKKIGQILNATT--QIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ IP V D L AL +L R + ++AITGS GKT Sbjct: 56 LTKGATAVLVDDRH---QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M + + S KT+ ++NN IGVPLTL MP D + + ELGM G++ L+ Sbjct: 113 TTKDMASAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDDTEVLVVELGMDRPGQLTTLSE 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P IA+IT I AH+ F E IA AK EI +GL+ GT+ + YD+ ++ Sbjct: 173 LVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLL------TN 226 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + +FG+ + + I N++ L Sbjct: 227 AQVKQNVQTFGQDIKDINSSSSKTI-------------FTYQNTRFAIPLLGRYNIMNAL 273 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +S A + R LI + YN+NP ++ A ++ L Sbjct: 274 AAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLATL 333 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKD 416 I + VLGDM E+GE + S H LAE + N+ V+L G + + Sbjct: 334 KIIPAT---HKYVVLGDMLELGEQAASLHACLAETVINANVDGVYLVGPLMNKYLYPILQ 390 Query: 417 ALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S H+H ET + L +Q+ +GDV+++K+S+ ++N L++ Sbjct: 391 RRFDSAHLHQYETDQLAELIKDLQTLGENGDVILLKASHGIHLENVVNALVK 442 >gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter winogradskyi Nb-255] gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrobacter winogradskyi Nb-255] Length = 476 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 197/466 (42%), Positives = 269/466 (57%), Gaps = 2/466 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A++ G +P + GISIDSR++AP EA+FAIKG +DGH F+ A++ Sbjct: 5 PLWTLDEMAAAMRAEGRGTLP-AAITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAALK 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV +L +P+ VDDVL AL LA A+R R A +IA+TGSVGKT+T Sbjct: 64 AGAALAVVEAARRDQF-ALELPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + KT+ + S+NNH GVPL+L+R P D F +FE+GM+H GEI L +V Sbjct: 123 KEALRGVLGAQGKTHVSVASFNNHWGVPLSLSRCPADARFAVFEIGMNHAGEITPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+ P HL FSG+E IA AKAEIFEG+E G + LN D++ F L+ + L Sbjct: 183 RPHVAIITTVEPVHLEFFSGVEAIADAKAEIFEGVEPDGAVVLNRDNAQFARLQECARKL 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI I +FG + AD +L S + ++ G + G HMA N L L Sbjct: 243 GIAKIVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 S+ AD+ A ALS P GRG R A+ G LIDESYNANPASM AA++VL + Sbjct: 303 ASLAGADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLGE 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +GRRIAVLGDM E+G S H DL + ++ ++ G + L +AL Sbjct: 363 AKVGTQGRRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGPLMRNLWNALSSGR 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 Y+E L + +++ GDV++VK S ++ L + Sbjct: 423 RGGYAEDAAALESQVTAAIRSGDVIMVKGSLGSRMKVIVTALERRY 468 >gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] Length = 461 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 252/472 (53%), Gaps = 13/472 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT +L A G +G P V GISID+RS+AP + F A+KG + DGH I A Sbjct: 1 MSLLWTREELETATGGTFLGNAP-VSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA V+ ++ + G + V D + L KLA+AAR R K ++A+TGSVGKT Sbjct: 60 LEKGAAAVLAHS----AEGLTDPRILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML + L+ T+A SYNNH GVPLTLAR+P + F I E+GM+H GEI L Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREAAFCISEIGMNHPGEILPLAK 175 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+P +AVITTI AHL + ++ IA+ KA I L G + D A + Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITALPAGGIAIMPDDAHGTPFFTAAAV 235 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + L + ++ S +V + GK+ V G H+A+N ++ L Sbjct: 236 KAQAVLWP-CGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARNAVVAL 294 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L ADV A AL+ F P +GRG + A TL+DESYNA+ AS++AA+ V+ Sbjct: 295 AACAALGADVAKAAAALAAFRPGKGRGALTKIAGG--AITLLDESYNASAASIRAALDVV 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 I RIAVLGDM E+GE S S H + V+ G ++ L DALP Sbjct: 353 RHIPATR---RIAVLGDMRELGEFSISEHQA-LAAPTASAADLVFCCGSYMKTLFDALPP 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 S ++E+ L + ++L GD V+VK S +I L PA++ Sbjct: 409 SKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIAAL-NALPAVE 459 >gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] Length = 457 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 125/441 (28%), Positives = 201/441 (45%), Gaps = 16/441 (3%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ IDSR + + I+G + +GH F+ A+ GA V+ + V V Sbjct: 28 GVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVLWER--REPNPPKEVTVILV 85 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D AL LA A R + +I ITGS GKT+TK+++ ++ T +G++NN IG Sbjct: 86 EDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYITQKTMGNFNNEIG 145 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL +V+ G+ E+GM +LGE+ FLT+LVRP IA+IT + AHL N +E IA Sbjct: 146 VPLTLLSFSQNVEVGVVEMGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIAR 205 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK EI EGL G + N D + + G + SFG + D+ + + Q E Sbjct: 206 AKVEIAEGLRDGGMLIYNGDQPLLKDALRAAQLSGGIALRSFGTQQGNDYIVHEVCQQKE 265 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + ++++ + A +AL F E G Sbjct: 266 GLSFYINDVACHLDMI-------GKHQAMNATAAWIAAKALQVCEAEALKGFESIEKTGL 318 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R ++++SY +NP S AA+ L + + +AVLGDM E+GE S Sbjct: 319 RNELVS-FDQALILNDSYKSNPQSALAALDTLEEFDIPYK---LAVLGDMLELGETSDQI 374 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGD 445 H L + L Y++ V G A +H + + + L+ +++ Sbjct: 375 HYQLGKDLKNYHLQEVLTIGDMARYTAQAAFNELHDVYIRHFVNKEELYSYLKPYGKKEC 434 Query: 446 VVVVKSSNSCGFYRLINLLLE 466 ++++K S L++ L++ Sbjct: 435 MILIKGSRGMKLDELVDWLVK 455 >gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 463 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 165/469 (35%), Positives = 244/469 (52%), Gaps = 14/469 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW + +A++G V ++ DSR I + FFA+KG DGH+++ A Sbjct: 1 MKALWQSEAIARAVKGT---ASADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVDAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA VV + + P VDD AL LAVA+R R+ II ITGSVGKT Sbjct: 58 FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110 Query: 121 TTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +TKE L + + +K + + SYNNH+GVPL+LARMP + FGIFE+GM+H GE+ L Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV+P +A+IT IAPAH + F+ IA AK+EIFEGL G + +D + +LL AK Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++ + + ++ + + + N + Sbjct: 231 VQEKKAEIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L +V + D+ A AL +GRG+R+ + G +IDESYNANPASM A I Sbjct: 291 VLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIK 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + RRI +LGDM E+G+ S ++H LA+ LS + HV L G + AL+++L Sbjct: 351 ALENEP--KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEESL 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I E D + L D+++VK SNS G +++ L ++ Sbjct: 409 AGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSTVVSSLSKK 457 >gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Weissella cibaria KACC 11862] Length = 454 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 202/466 (43%), Gaps = 19/466 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T ++ AI I V + DSR F + + DGHD++ AV G Sbjct: 3 LTLQEMATAINAEIIN-AADVAVTSTTFDSRKAEAGSLFVPLVAAN-DGHDYVASAVANG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + D +P V D L A +LAV + + ++AI+GS GKTTTK+ Sbjct: 61 ATVTLWQADH--PNVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAISGSNGKTTTKD 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + +S KT ++NN IGVP T+ MP D + + E GM G++ FL+ +V P Sbjct: 119 FVAAIGASTFKTVKTPANFNNEIGVPTTILSMPADTELLVIEFGMDRPGDLTFLSEMVHP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAV+T I AH+ F E IA K EI GL+ G + N D+ LL+ ++ Sbjct: 179 DIAVLTMIGEAHIEFFKTRERIADGKMEIIAGLQPNGVLVYNGDEP---LLRERAGQHAF 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG + + D + + + + G +++GI+ Sbjct: 236 LHTATFGLNPDNDLYASTIAMNPVGATFQTDKSAMTYHIPLTGRYNVSNALAAISVGILL 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ D A + R ++ + YN+NP + K + ++ Sbjct: 296 GISDDKIAQALAEAPIT-----ENRTEWLAGNFGGKILSDVYNSNPTAAKEVLHFFAETP 350 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----- 419 GRRIAVLGDM E+GE + H LAE L I HV+L G + +L+D L Sbjct: 351 V--TGRRIAVLGDMLELGEAGPALHASLAEKLDPATIQHVYLVGDIMASLEDVLSVNYPA 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ + + L +Q+ L D V++K S+ ++ L+ Sbjct: 409 GTVKRYSKDDKATLIADLQADLTADDAVLLKGSHGIHLEEVVTALV 454 >gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] Length = 457 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 128/469 (27%), Positives = 209/469 (44%), Gaps = 23/469 (4%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + G I G +N +S D+R++ F AI G +D HDF AV+ Sbjct: 5 SLEQICSVVSGELIEAGNSNNNVINAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVERKL-----DLNITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I+ + AK EIF+GL T +N + + + + A Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFW-NEVLADK 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S G + F ++ ++Q + V IG H N L + Sbjct: 239 TVLTFSEGSREADYFAENIEINDQGEACFDMQTPQGATAVELGIIGQHNVTNALAAAALS 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 A +D L+ +GR + + + N LID+SYNA+ +M +++ Sbjct: 299 IQFGATLDEIKSGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +G+R +LG+M E+G+ S + H + E + + HV G + + + Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407 Query: 424 VHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + T + I+ L ++VK +NS G ++ L E F Sbjct: 408 GTHFATHQAMIAHIEQHLRLPENASHTLLVKGANSAGMSKIAAALKENF 456 >gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 452 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 206/464 (44%), Gaps = 21/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T L G G ++ ++ D+R + F A+KG +D HDF A G Sbjct: 4 FTLSQLAAIAHGERQG--SDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG ++V+ + +P V+D A +LA R + ++A+TGS GKT+ KE Sbjct: 62 AGALLVSRPLA-----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M LS T G+ NN IGVP+TL R+ + + + ELG +H GEI + L RP Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++ +A AHL F + +A AK EI+ GL + G LN D++ + +A + Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + N+DF + S + +Q +++V+ G H N L + Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + AD+ L+ GR R + L+D+SYNAN SM AA+ VLS++ Sbjct: 295 AVGADLAAVKAGLAQLQAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R V+GDM E+G S + H ++ E + V G + A S Sbjct: 352 ----GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRA---SGVG 404 Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + ++ L + + ++VK S S ++ L + Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQD 448 >gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 458 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 123/469 (26%), Positives = 204/469 (43%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + G G +N I ID++ I P F A+ G +D H FI A Sbjct: 1 MISL-SLKKIALITNGTLYG--ADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++K V ++ +P V++ AL ++A R ++KA I+AITGS GKT Sbjct: 58 LKKKCAAFVTQKNIKPH-----VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L T + I + NN+IGVP+TL ++ + +G+ ELG S GEI + ++ Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I +I I AHL F + ++ AK+EIF GL+ T+ +N D F K Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQW-KKDI 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K K ++F K + + + + +GY N L Sbjct: 232 KNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + L R + + LID++YN+N +SM +AI VL Sbjct: 292 AFSFALKIPLKKIKIGLLDTPIVSKR---LESIILEPNKILIDDTYNSNVSSMISAIKVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G +I V GDM E+GE S +H + + I+ ++ G + Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467 + L ++++ ++VK S S +++ L++E Sbjct: 405 GK---HFLNKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450 >gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 218/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + V G+SID+R I + I+G +DGH F+ A++ G Sbjct: 5 TLKQVEQMVMGAGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ ++IPV V+D L AL LA + R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWKKNV--QNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + + IA AK EI GL+ G N D+ + Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTNRVPSMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ ++ + ++ ++ + +G H N L ++ I Sbjct: 243 TI--TFGDARANNYYPTSVTLQATGTYFKMNQDENVVFY-LPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R + T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKQGL---VTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + DVV+VK+S +I +L Sbjct: 415 ERVKVYDNKEELVKNLQAIVDVKDVVLVKASRGMKLEEVITMLK 458 >gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] Length = 449 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 155/463 (33%), Positives = 240/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L +A+ +I I N + +S+ + + F ++G DGHD++L A Sbjct: 1 MI--WNSETLSKAL---AITISNSINCNEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ + + + VDD L K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIVSKQVEINDKD---KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L I L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKILLQYDSLVFASRGNFNNRLGLLINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIFE K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADINCYNKIVSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I +Y+FG S N QL ++ EQ ++ ++ KS+E+ I H A+N L Sbjct: 232 NLSINRVYNFGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAIL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P K +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANIPP----NKGRGEIINIQNSRIICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H +L + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPP 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIVKKYFKNVDELITHITDLFESNELILIKGSRGIKLDKIVDY 447 >gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] Length = 477 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 120/482 (24%), Positives = 205/482 (42%), Gaps = 33/482 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + ++L+A+ G + + + DSR + F + G + DGH ++ A++K Sbjct: 7 LLSLEEILEAVNGVHVLGNSPLCIKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQAIEK 66 Query: 64 GAGLVVVNTDMVASIG---------SLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113 GA +V ++ + G + S+ V++ L AL K A + I I + Sbjct: 67 GASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPHLIKIGV 126 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTKE+L LS K + G+ N+ G+PL++ + + + G+FE+GM+ Sbjct: 127 TGSSGKTTTKEILVSILSQKYKVISNKGNLNSETGLPLSVFNIRAEHECGVFEMGMNREN 186 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI + +++P AV+T I AH+ E IA KA+IF GT + DD F + Sbjct: 187 EIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYFGGFGTGVIPVDDEFSD 246 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 LK + GK K + + +E + G + Sbjct: 247 FLKNEID----------GKVVFYGNDTDSVKYICDMGLKGTKFSIDGIETILPLPGKYNY 296 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 ++ L + + +L +S P GR L+ F ++ + YNANP SM Sbjct: 297 KDALGAIALAQVLGLSSRQISDGISSLKPLSGRS----EILDGKNFLIMQDCYNANPDSM 352 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 + AI + + + ++I VLGDM E+G S+S H + ++ V G + A Sbjct: 353 EKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAHEKTGLLAVNSDVDLVIFIGTEMKA 412 Query: 414 LKDALPRSIHVHYS-------ETMDGLFLFIQSSLVD--GDVVVVKSSNSCGFYRLINLL 464 S + ++M+ I+ L ++ +K S G R+ +L Sbjct: 413 AFKKAKNSSEKNIIFIAGNSQDSMERAASEIKKVLHGSLNSIIFIKGSRGMGLERISKIL 472 Query: 465 LE 466 L Sbjct: 473 LA 474 >gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] Length = 449 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L + N + +S+ + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAVLGITI---SNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V I H +N L Sbjct: 232 NLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPA 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) [imported] - Buchnera sp. (strain APS) gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 455 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 123/469 (26%), Positives = 204/469 (43%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + G G +N I ID++ I P F A+ G +D H FI A Sbjct: 1 MISL-SLKKIALITNGTLYG--ADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++K V ++ +P V++ AL ++A R ++KA I+AITGS GKT Sbjct: 58 LKKKCAAFVTQKNIKPH-----VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L T + I + NN+IGVP+TL ++ + +G+ ELG S GEI + ++ Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I +I I AHL F + ++ AK+EIF GL+ T+ +N D F K Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQW-KKDI 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K K ++F K + + + + +GY N L Sbjct: 232 KNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + L R + + LID++YN+N +SM +AI VL Sbjct: 292 AFSFALKIPLKKIKIGLLDTPIVSKR---LESIILEPNKILIDDTYNSNVSSMISAIKVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G +I V GDM E+GE S +H + + I+ ++ G + Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467 + L ++++ ++VK S S +++ L++E Sbjct: 405 GK---HFLNKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450 >gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 470 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 200/470 (42%), Gaps = 12/470 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ + T L+ I G ++ ++ + D+R+I P + F A++G +D +D + A Sbjct: 1 MSAMMTLSHALKLIPGATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA V+ + + AS +P V++ AL LA R + +IA+TGS GKT Sbjct: 61 FAKGAAAVLCHAGLTASAYPAGLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T +M+ L + A +G++NN IGVPLTL RM + ELGM+H GEI Sbjct: 121 TVTQMIASILHAHAPDGAALATVGNFNNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAV 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P +A++ HL IE +A + L +TGT DD + L + Sbjct: 181 LAAMAQPTVALVNNAQREHLEFMHTIEAVARENGSVLSSLPETGTAVFPADDDYAPLWRE 240 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G ADF +R + + G H +N L Sbjct: 241 --LSAGRVVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSL 298 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 T + L F P +GR + + FTL+D++YNANP SM+AAI Sbjct: 299 AAAACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSMRAAI 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + G R+ V+GDM E+GE +FH + I HV G Sbjct: 359 DVLADLP----GPRLLVMGDMGEVGEQGPAFHAEAGRYARDAGIEHVLALGDSSAHAVQE 414 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +P + + + L + V+VK S R++ L Sbjct: 415 MPG---ARHFKDVADLNAAALALAPAVASVLVKGSRFMRMERVVEALSAR 461 >gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] Length = 456 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 191/466 (40%), Gaps = 20/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W ++ + IG + + DSR+IAP + F A+ GP +DGHD++ Sbjct: 1 MLKPWLLSEIAADLSARLIGD--DVAFSAVGTDSRTIAPGQLFVALTGPRFDGHDYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVA----NAPLPQLLVADTRLALGQLGALNRQAFTGPLAAVTGSSGKT 114 Query: 121 TTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 + KEML L + A G+ NN +G PLTL + + G+ ELG +H+GEI + Sbjct: 115 SVKEMLAAILRAGLNGAVLATRGNLNNDLGAPLTLLELAPEHRAGVIELGANHVGEIAYT 174 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L RP + +IT AH+ F G E+I AK EI EGL + G LN DD F + + Sbjct: 175 VSLTRPQVTIITNAGNAHVGEFGGPEKIVQAKGEILEGLAQDGVAVLNLDDKAFSTWQRR 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + SF E+ L+ V Sbjct: 235 ---AAGHQVLSFALRDTRADFHGSDLARDERGCQGFTLRSPVGSVRIQLNLLGEHNVANA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + A + R L +ID+SYNANP SM AA+ Sbjct: 292 LAACAAAHALGLPLVAMA-KGLENLQPVKGRAVAQLAPNGMRVIDDSYNANPVSMCAAVD 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ S GR + VLGDM E+GE ++ H D+ + + ++ G + + Sbjct: 351 ILAGFS----GRTVLVLGDMGELGEWAEQGHRDVGRHAA-GKVDALYAVGPLMRFAVEEF 405 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L +++ G +++K S S +++ L Sbjct: 406 --GSKGRHFVDQAELIEALRAE-QAGSTLLIKGSRSAAMDKVVAAL 448 >gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] Length = 477 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 122/442 (27%), Positives = 190/442 (42%), Gaps = 9/442 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 + IDSR + F A+ G DGH F+ GA VV+++ + GS Sbjct: 32 VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD + A +LA A R R +I I GS GKTTTKEM+ LS+ K G+YNN Sbjct: 92 LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGNYNN 151 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL ++ D + + E+G++H GE+ FL + RP ++T I HL F ++ Sbjct: 152 HLGVPLTLFQLRRDTEMAVIEMGINHPGEMAFLASIARPTHGLLTNIGHEHLEFFGSLDG 211 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A A+AE+F+ LE +G D S + I G+ + + Sbjct: 212 VAKAEAELFDYLEVSGGTAFVNLDDHRLAAAGASLSRKICYGAVPGEPCAWWAEEVGSDR 271 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ G V + IG H N + + + + L P G Sbjct: 272 VGRIAFTLCSEAGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQIASGLGELMPASG 331 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + L G +++++YNANP S++ A+ L+ + GR++AV+GDM E+G + Sbjct: 332 WKRM--ELLEAGGVVVLNDTYNANPDSVRLALDTLASL--DCSGRKLAVIGDMLELGGNA 387 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + + I G + H ETMD L F+ + GD Sbjct: 388 ALEHESIGNYIRQLPIDGCVTIGPLAGSCCQNAQERCLGH-FETMDDLDAFLGDYVRPGD 446 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 V+ K S L++ Sbjct: 447 AVLFKGSRGMKLELAAEALVKR 468 >gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] Length = 457 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +G+ VVV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VAQGSVAVVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa M567] gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa ATCC 17931] gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa M567] gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 535 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 141/476 (29%), Positives = 205/476 (43%), Gaps = 22/476 (4%) Query: 1 MNPLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L + +++ A G G + + DSR + P F A G DGH+F+ Sbjct: 1 MIKL-SAAEIITATGGSPLGLAGRESELGATFATTDSREVIPGTLFVAKPGEVTDGHNFV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113 A KGA L +V + G L P VDDV+ A+ K+A A R T+I I Sbjct: 60 SGAFDKGAVLALVERPVKDERGIL-YPSIQVDDVVLAMGKIAQYAVEKMRSLGDLTVIGI 118 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTK++L LSS +T A +GSYN +GVPLT+ R + + E+G H+G Sbjct: 119 TGSAGKTTTKDLLAAILSSQGETIAPVGSYNGEVGVPLTVFRADESTRYLVIEMGADHVG 178 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I +L ++V P VI + AH F G++ I K E+ EG+ GT+ LN DD Sbjct: 179 NIEYLANIVHPDHGVILKVGTAHAGEFGGVDNIERTKGELAEGIRTGGTLILNADDERVA 238 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIG 289 + A+ A T + G+ + + + E+ IG Sbjct: 239 RMSAR--ASAPVTYFGVGEKPQYERYTAALGLHTNDAGCPEFTLRLPDASEYEISSKLIG 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N+L + D AL+ + T+I+++YNAN Sbjct: 297 EHHVCNILAAATVAYNAGVPGDAIAHALNNTGALSKWRMARTDRADGV--TVINDAYNAN 354 Query: 350 PASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P SM AA+ L+Q+ R AVLG M E+GE S H L ++ NIS + G Sbjct: 355 PESMTAALRTLAQLGRGAKPRRTWAVLGAMLELGEASLEEHDRLGRLVVRMNISKLIAVG 414 Query: 409 FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 +A + ET +++ L GD+V+ KSSN L Sbjct: 415 NEAKPAYNAAHLEGSWGNEATWVETPQEALNILRAELRSGDIVLFKSSNGAKLGSL 470 >gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] Length = 476 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 167/454 (36%), Positives = 239/454 (52%), Gaps = 15/454 (3%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ G+SID+R++ + F A+ DGHDF+ A+ KGA +V+ V Sbjct: 19 PEWQATGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVSH--VPQGVPED 75 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P+ V DV AL L A R R ++A+TGSVGKT+TKEML LS KT+A + S Sbjct: 76 APLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVAS 135 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNH GVPLTLARMP D +F + E+GM+H GEI L + PH+A+ITT+A AHL F Sbjct: 136 YNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALITTVAAAHLEAFED 195 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 I IA KA IFEG+ G LN D +L AK+ + +FG+ DF+L + Sbjct: 196 ITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRL-RDITFGEHGY-DFKLMR 253 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + Q+ + + G H A N L + +++ L DV A+ +L + P Sbjct: 254 ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVALALGSLGRWTP 313 Query: 323 KEGRGKRYRCALNQGFFTLI----DESYNANPASMKAAI------SVLSQISPHGEGRRI 372 +GRG+R R L+ L D+SYNANP SM AA+ V + I +GRRI Sbjct: 314 YKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAKVTNDIGRVSKGRRI 373 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 A LGDM E+G + H LA + + I + G + AL DALP + ET + Sbjct: 374 AYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDALPEPQRGTWFETAEE 433 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +++ + GDVV+ K S S +++ + + Sbjct: 434 AATRVKTHIDSGDVVLAKGSLSMKLACVVDAIRK 467 >gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] Length = 449 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 239/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L + N + +S+ + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAVLGITI---SNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V+ I H +N L Sbjct: 232 KLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVMIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] Length = 456 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 139/476 (29%), Positives = 209/476 (43%), Gaps = 33/476 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q + + IG Q V I+ D+R FFA+KG H+D H ++ A Sbjct: 1 MIKLTT-QQLAQILNANLIG-DGQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA +VV + ++S P V D AL +LA R + I+A+TGS GKT Sbjct: 59 VEQGATALVVQK----ANTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G++NN IGVPLTL R+ F + ELG +H GEI Sbjct: 115 TVKEMTASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEID 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + THL +P A++ +A AHL F IE +A AK EI+ GL G +N + ++ EL + Sbjct: 175 YTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTPNGMAIINSEHNYIELWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + I+ D++ + S + S+E+ +G H +N Sbjct: 235 KEIGSHAIQ------YFNGGDYKAENVEHSPNGSTFMLVSPKGSIEINLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S++AA Sbjct: 289 LAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNEN---LLLLDDTYNANVDSLQAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL RI ++GDM E+GE S H + E + V G + + Sbjct: 346 IDVLKGYDA----FRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVLSYGTESAVISE 401 Query: 417 ALPRSIHVHYSETMDG----LFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466 A + + I+ L + VV+ K S S I L + Sbjct: 402 A----VLGKHFTDKAELTAYALDIIKQKLQENQKVVVLAKGSRSMKMEETIYSLKD 453 >gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] Length = 473 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 121/479 (25%), Positives = 192/479 (40%), Gaps = 14/479 (2%) Query: 1 MNP---LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + + + + G + + + + IDSR + F A++G DGH +I Sbjct: 1 MKAVLDMLDLQGIGRIVVGDAADGLSRIVEPVVVIDSREVQEGGIFVALEGERTDGHRYI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIA 112 KGA L VV+ AS G VDD + L ++AVA R + A Sbjct: 61 DDVFAKGASLAVVSEAWYASHGQKDGAAGRRSYLIVDDTVRGLQQMAVAYRRSFSIPVFA 120 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 + GS GKTTTKE++ L K + G+ NNH+GVPLTL +M D + + E+G++H Sbjct: 121 VGGSNGKTTTKELIASVLGVGFKVHMSRGNRNNHLGVPLTLLQMKRDTEIAVVEMGINHP 180 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+ L + P ++T I HL ++ +A+A+ ++E L+ G + D + Sbjct: 181 GEMELLASIAMPTHGLLTNIGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPW 240 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 LL A S G + + + L V G H Sbjct: 241 -LLSAASKLERAVLYGLNGCGEGVPHAESAALDPFGRPSFMLCLSQACESVTLSLTGRHN 299 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L S L + + L P G + +++YNANP S Sbjct: 300 VVNALAAAAAGSYLGLSLREIKEGLENMIPATGWKRLEFQEAGGVMIV--NDTYNANPDS 357 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+ AI +L + GR+IAVLGDM E+G ++ H + I ++ G Sbjct: 358 MRLAIDLLCDL--QCSGRKIAVLGDMLELGSSAELEHEKTGRYIQQSGIDLLFTFGDLSK 415 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S + E+ + L + + GD V+ K S + + L E + Sbjct: 416 HFSTG-NASRSCGHFESREALASALGDVVASGDAVLFKGSRGMKLEEVADALNHERSTL 473 >gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316] gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316] gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] Length = 455 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 210/471 (44%), Gaps = 30/471 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H++ + + + + + I DSR+I+ + F +KG DGH+FI A Sbjct: 3 LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P V D L A LA + +IA+TGS GKTTTK Sbjct: 62 GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + I E+G HLG+I L+ + + Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AHL F E+IA K +I +G+ G + D L A + Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D +L+ + E+ + + ++ G + A N ++ + Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + AL R + + A ++ + YNANP +M+ + S I Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IA+L DM E+GE S H + + +I + G + L + Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V++ + D L ++ +L + D +++K SNS +++++L Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 453 >gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa DSM 4126] gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa DSM 4126] Length = 436 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 114/440 (25%), Positives = 195/440 (44%), Gaps = 23/440 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI DSR + FFA+KGP+++G+ F A+++GA VV++ + Sbjct: 15 SGICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNT---IL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L AL LA R + I+ ITGS GKTT+KE++ L++ K +A G+ NNHI Sbjct: 72 VEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL+L + D + I E+G +H+GEI + +P +IT I AH+ F G E I Sbjct: 132 GVPLSLLSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLITNIGKAHIGEFGGFENII 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+F+ + + + L + + Sbjct: 192 IGKSELFD---------FLKKNDGVPFINTQDAVLKNMEKRFSNAITFPNEGDDLQLKPE 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + H +G N+ L I ++ AI+A + P+ R Sbjct: 243 KGTAFLRYSTEGFSHIDTHLVGQFNYLNVAAALCIGKYFEVTMEKAIEATQEYMPENMRS 302 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + +T++ ++YNANP SM+ + +S + +LGDM E+G+ ++ Sbjct: 303 QMIK----TDNYTILLDAYNANPDSMEL---AMKSLSAIENTESVVILGDMLELGDTAEL 355 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDV 446 H L E+ IS + G ++ A + Y ET D L + + L G Sbjct: 356 EHEKLGELAVDLGISKRYYCG---KQIQSASKKDNFGKYFETKDELIEHLTAKPLKKGST 412 Query: 447 VVVKSSNSCGFYRLINLLLE 466 +++K S ++ L++ Sbjct: 413 ILIKGSRKNALEEIVPFLVK 432 >gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 461 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 177/472 (37%), Positives = 252/472 (53%), Gaps = 13/472 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT +L A G +G V GISID+R++ + F A+KG + DGH I A Sbjct: 1 MSLLWTREELETATGGTFLGNT-SVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA ++ ++ + G + V D + L KLA AAR R K ++A+TGSVGKT Sbjct: 60 LEKGAAAILAHS----AEGFTDPRILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML + L+ T+A SYNNH GVPLTLAR+P + F I E+GM+H GEI L Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEILPLAK 175 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+P +AVITTI AHL + ++ IA KA I L K G + D E A++ Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVPDDAHGTEFFTAEAE 235 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +++ G + ++ L ++ S +V +QGK+ V G H+A+N + L Sbjct: 236 KAQA-VLWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNAVAAL 294 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L ADV A AL+ F P +GRG + TL+DESYNA+ AS++AA+ VL Sbjct: 295 AACAALGADVAKAANALADFRPGKGRGALTQIVGG--AITLLDESYNASAASIRAALDVL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 I RIAVLGDM E+GE S S H + V+ G ++ L DALP Sbjct: 353 RHIPATR---RIAVLGDMRELGEFSISEHQA-LAAPAASAADLVFCCGSYMKTLFDALPP 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 S ++E+ L + ++L GD V+VK S +I L PA++ Sbjct: 409 SKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIAAL-NALPAVE 459 >gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] Length = 454 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 202/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + +G G ++ +S D+R+I F A+ G +D H+F A Sbjct: 1 MIKV-TLSQIANITRGELFGD--DLLIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAG ++V + +++P V D AL +LA + +AITGS GKT Sbjct: 58 VDAGAGALLVQKHL-----DVNVPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL +N D S ++ Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGSIAIVNLDSSGETKWESVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + AD+ + S + + +G N+ + Sbjct: 233 DKEVIT--FSQSNSAADYYASNIVMNAAGEASFNLHIAASSQEIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 AAFP----GQRWLILGNMAELGEESLALHRQVGEYAAPQKFEHVLTYGADAKVISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ET + +I+ L + ++VK +N + + L E + Sbjct: 404 -CQGIHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454 >gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] Length = 466 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 122/477 (25%), Positives = 191/477 (40%), Gaps = 23/477 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + + + I G + + DSR++ P + F A+KG +D HDFI V Sbjct: 4 SKMTNLQEAAGWIAGARVLGDGTQAFARVHTDSRTVEPGDLFVALKGERFDAHDFIADVV 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA V+V+ D+ A +P D AL +L R + +A+TGS GKTT Sbjct: 64 ARGAVAVLVSRDVDA-----GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTT 118 Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ G+ NN IG+PLT+ R+ + ELGM+H GE +L Sbjct: 119 VKEMIAAIFAAAVGEDQRLATGGNLNNDIGLPLTVLRLRATHRLAVLELGMNHPGETVYL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +P +AV+T H +E +A A L G D+ A Sbjct: 179 AGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAI 238 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + M+V+ G + EV +G H +N L Sbjct: 239 WRAAAGTRRVLSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALA 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 V + L+ F +GR + G +ID++YNANP SM+AAI Sbjct: 299 ATACALAAGVQVPAIQQGLAAFKAVKGR---LQVKHTPGGTVVIDDTYNANPDSMRAAID 355 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ + R+ V+GDM E+G+ +FH ++ I +W +G A Sbjct: 356 VLAGFAA----PRLLVIGDMGEVGDQGPAFHTEIGGYAQALGIEALWATGELATHAVQAF 411 Query: 419 PRSIHVHYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + E L ++ G V+VK S R++ L+ + PA Sbjct: 412 --GAQGRHFERAADLARALEEDAGGTVAKAG-AVLVKGSRFMRMERMVAALVADTPA 465 >gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 449 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 149/463 (32%), Positives = 237/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L + N + +S+ + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAVLGITI---SNSINCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+I +IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNITMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V I H +N L Sbjct: 232 NLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 475 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 135/474 (28%), Positives = 207/474 (43%), Gaps = 28/474 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHD 55 M L T ++ A +G + P+ V+G+S DSR + P FFA G DGH Sbjct: 1 MIAL-TLSEIAAATRGRLLLEGTDATPRTVVDGLSTTDSREVVPGSIFFAKPGETTDGHL 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATII 111 F+ A+ GA LVVV+ ++ ++ P V+D + AL +LA R I+ Sbjct: 60 FVPQALDSGAALVVVDREL-----DVAGPQLVVEDTVVALGELAADVIARVRALGNLRIV 114 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKTTTK +L L T A S+NN +G P+T+ + + + E+ S Sbjct: 115 GITGSNGKTTTKNLLRAILEQSGPTIAPRASFNNEVGAPVTMLEVSERTQYLVAEMSASG 174 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI L + RP I ++ + AH F GIE+ +AK E+ L ++ LN DD Sbjct: 175 IGEIARLVGMARPDIGIVLKVGLAHAGEFGGIEKTLAAKTEMVSDLLESDVAVLNLDDPR 234 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + K+ A + FG A + + S + ++L G Sbjct: 235 VASMADKTAAHVLW----FGLDDRAAVRASDIRSTSRGTSFVLRLPGADGGDAASRPVRF 290 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYN 347 + ++ A I + R G T+I+++YN Sbjct: 291 HVLGEHHVMNALAAAAAAHTLGIGIDRIVGGLEAVQRAERWRMEVLGGAGGVTVINDAYN 350 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+P SM AA+ L+QI+ GE IAVLG+M E+GE S H + + I + + Sbjct: 351 ASPDSMSAALKTLAQIAGPGER-TIAVLGEMSELGEFSGEEHDRVGLLAVRLGIDQLVVV 409 Query: 408 GFHVLALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 G + A+ Y E+ D + ++ +L GD V+VKSSNS G Sbjct: 410 GPPARRMHITAINEGSWDGESLYFESQDAAYDHLKETLRAGDTVLVKSSNSAGL 463 >gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri DSM 4166] Length = 458 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 197/467 (42%), Gaps = 20/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +L + G +G + +S DSR+I P + F A+ GP +DGH ++ Sbjct: 1 MLEAMRLSELQLPLSGRLVG--ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R K + AITGS GKT Sbjct: 59 AAKGAVAALVAREVEGAP----LPQLVVADTRLALGRLGALNREAFKGPVAAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 + KEML L S A G+ NN +G PLTL + + + ELG S +G+I + Sbjct: 115 SVKEMLASILRSAHGHDAVLATRGNLNNDLGAPLTLLELSAEHRSAVIELGASRVGDIAY 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LVRP +++IT AH+ F G E+I AK EI +GL TGT LN DD + + Sbjct: 175 TVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGLSATGTAVLNRDDKAYPIWAE 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I SFG ++ L G + Sbjct: 235 RVAGK---RIVSFGLDNPPADFSAGSIAYDQRGCPNFVLTGPLGNLRVQLNLLGRHNVAN 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + ++ + R + LID+SYNANPAS+ AAI Sbjct: 292 ALAAAAAAHALGITAEAV-VAGLQGLQPVKGRAVAQMLANGVRLIDDSYNANPASICAAI 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + GR I VLGDM E+GE ++ H D+ + + ++ G + A Sbjct: 351 DVLASFA----GRTILVLGDMGELGEWAEQGHRDVGAYAA-GKVDTLYAVGPLMAHAVAA 405 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +++ G +++K S S ++++ L Sbjct: 406 FGQGAR--HFPDQASLIESLRAEQGSGTTILIKGSRSAAMDKVVDAL 450 >gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, 6-diaminopimelate--D-alanyl ligase [Rickettsia montanensis] Length = 449 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 239/463 (51%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ N + +S+ + + F A++G DGHD++L A Sbjct: 1 MI--WNSKTLSAALGITI---SNSINCNEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+++ + + + VDD AL K+A+ R SKA I ITGSVGKT Sbjct: 55 IDKGAAAVIISKQVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIVITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L + L +A G++NN +G+ + LA M D ++ IFELGM+H GEIR L Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT I+ AHL F+ +EEIA AK EIF K +N D + + + + Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I I+SFG+S +L ++ EQ +++ ++ K ++V I H +N L Sbjct: 232 NLSITDIHSFGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+GE S+ H L + + S V+L G + + D LP Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I +++++K S ++++ Sbjct: 405 KIAKKYFKNVDELMTHITDLFEGNELILIKGSRGVKLDKIVDY 447 >gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70] Length = 460 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 210/477 (44%), Gaps = 28/477 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L +Q +G V IS D+R FFA+KG H+D H+++ A Sbjct: 1 MLKLTT-KQLATILQAELVGEA-NVVVENISTDTRQRVASSLFFALKGEHFDAHNYLDKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VAQGANALVVER----ADTQISVPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKT 114 Query: 121 TTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM L S ++ G++NN IGVPLTL R+ F + ELG +H GEI + Sbjct: 115 TVKEMTASILQSAVGVEQVLFTQGNFNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAY 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 T LV+P++A++ +A AHL F +E +A+AK EI+ GL+ G +N + + Sbjct: 175 TTGLVQPNVALVNNVAAAHLEGFGSLEGVATAKGEIYRGLQPDGVAIINKEHDYRSTWAQ 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A ++ + ADF S ++ + +G H +N L Sbjct: 235 DIGAHRVQYFAY--QDNTADFYADNVIFHEAGSTFDLCTPQGKTTIHLPYLGEHNVKNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + A + + L V +GR + L+D++YNAN S+++AI Sbjct: 293 AASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQP---CDNLLLLDDTYNANVDSLQSAI 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL + RI V+GDM E+GE SQ H +AE + V+ G + A Sbjct: 350 RVLQ----KYDAFRILVVGDMAELGENSQICHQQVAECAKAAKLERVYSFGSESAVISQA 405 Query: 418 LPRSIHVHYSETMD----GLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468 + L + L + V++ K S +IN L E F Sbjct: 406 ----CLGKHFTDKALLCRELTQLLSEKLKENQKIVLLAKGSRRMQMEDVINTLRENF 458 >gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 452 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 206/464 (44%), Gaps = 21/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T L G G ++ ++ D+R + F A+KG +D HDF A G Sbjct: 4 FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG ++V+ + +P V D A +LA R + ++A+TGS GKT+ KE Sbjct: 62 AGALLVSRPLA-----CDLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M LS T G+ NN IGVP+TL R+ + + + ELG +H GEI + L RP Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++ +A AHL F + +A AK EI+ GL + G LN D++ + +A + Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + N+DF + S + +Q +++V+ G H N L + Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + AD+ L+ GR R + L+D+SYNAN SM AA+ VLS++ Sbjct: 295 AVGADLAAVKAGLAQLKAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R V+GDM E+G S + H ++ EV + V G + A S Sbjct: 352 ----GFRAMVVGDMAELGAESAACHREVGEVAKAAGLDCVLSVGTLSADISRA---SGVG 404 Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + ++ L + + ++VK S S ++ L E Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448 >gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] Length = 452 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 205/464 (44%), Gaps = 21/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T L G G ++ ++ D+R + F A+KG +D HDF A G Sbjct: 4 FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG ++V+ + +P V D A +LA R + ++A+TGS GKT+ KE Sbjct: 62 AGALLVSRPLA-----CDLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M LS T G+ NN IGVP+TL R+ + + + ELG +H GEI + L RP Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++ +A AHL F + +A AK EI+ GL + G LN D++ + +A + Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + N+DF + S + +Q +++V+ G H N L + Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + AD+ L+ GR R + L+D+SYNAN SM AA+ VLS++ Sbjct: 295 AVGADLAAVKAGLAQLKAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R V+GDM E+G S + H ++ E + V G + A S Sbjct: 352 ----GFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRA---SGVG 404 Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + ++ L + + ++VK S S ++ L E Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448 >gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] Length = 452 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 204/464 (43%), Gaps = 21/464 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T L G G ++ ++ D+R + F A+KG +D HDF A G Sbjct: 4 FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 AG ++V+ + +P V D A +LA R + ++A+TGS GKT+ KE Sbjct: 62 AGALLVSRPLA-----CDLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M LS T G+ NN IGVP+TL R+ + + + ELG +H GEI + L RP Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++ +A AHL F + +A AK EI+ GL + G LN D++ + +A + Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + N+DF + S + + +++V+ G H N L + Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLHTPTGNVDVLLPLPGRHNIANALAATSLAM 294 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + AD+ L+ GR R + L+D+SYNAN SM AA+ VLS++ Sbjct: 295 AVGADLAAVKAGLAQLKAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R V+GDM E+G S + H ++ E + V G + A S Sbjct: 352 ----GFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRA---SGVG 404 Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + ++ L + + ++VK S S ++ L E Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448 >gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 453 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 113/464 (24%), Positives = 184/464 (39%), Gaps = 16/464 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ A G + P V + DSR + F +KG D H F+ A G Sbjct: 3 MTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + M VD AL ++A A R R ++ ITGS GKTTTKE Sbjct: 63 AAAALTQEHMRMEAEEA---WIAVDSTQLALQQIAAAYRQRFSIPVVGITGSAGKTTTKE 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M +ALS+ K G++N+ IG+PL + + + + + E+G+S GE+ L + P Sbjct: 120 MTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLAQVAEP 179 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV+T + H+ I K I + + +FLN DD L+ K+ Sbjct: 180 KYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT----G 235 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +G+ DF+ E + G V + + V+ Sbjct: 236 YETVFYGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVTLPVLGMHHVLDALAALAVA 295 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A + ++ +ID+SYN++P + K+++SVL+ Sbjct: 296 ERLGVPLKRAAAALRDYRPLAMRQQIYHVNEVA---VIDDSYNSSPGAAKSSLSVLAGFR 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421 GRR+AVL DM E+GE S+ H ++ + + + G A+ + Sbjct: 353 A---GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVGQEAKAVAEGARSVRAG 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I + ++S L GD V+VK S ++ LL Sbjct: 410 IDCRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVRALL 453 >gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 166/452 (36%), Positives = 239/452 (52%), Gaps = 13/452 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+SID+R++ P + F A+ DGHDF+ A+ KGAG +V+ + + Sbjct: 20 DWTVSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVSR--IPEGVRTTD 76 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ V+DVL AL +L A R R++A ++AITGSVGKT+TKEML L + +A SY Sbjct: 77 PLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHAAEASY 136 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNH GVPLTLARMP + DF + E+GM+H GEI LT L RPH+A+ITT+A HL F + Sbjct: 137 NNHWGVPLTLARMPRETDFAVIEIGMNHPGEIAPLTRLARPHVALITTVAAVHLEAFENV 196 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA KA I+EGLE G L + +L A++ + +FG QL Sbjct: 197 EGIAREKAAIYEGLEPAGVAILPGEIDTTTILLAEADKRAG-RVETFGLGAANTLQLTHL 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + ++++ + V G H A N + LG V L DV A + L+ + P Sbjct: 256 DLTDTATVAQIEVGEVTHLVRLATPGRHFAMNAVAVLGAVRALGGDVTLAARDLTFWTPP 315 Query: 324 E---GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE------GRRIAV 374 R + + TLID+++NANP SM AA+ VL+ P GRR+AV Sbjct: 316 AGRGTREFVQLDPVEREGVTLIDDAFNANPTSMAAALEVLAATKPAHGHGRIARGRRVAV 375 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 LGDM E+G + H LA++ L I V +G + L ALP +SE + L Sbjct: 376 LGDMLELGPDEAALHAGLADLDHLDAIDQVHCAGPLMHHLWAALPAEKQGRWSEKAEDLA 435 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + GDV++VK S R+++ + + Sbjct: 436 AEAHNLIDAGDVLLVKGSKGSRVSRVVDAIRK 467 >gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] Length = 468 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 197/474 (41%), Gaps = 28/474 (5%) Query: 1 MNPLWTFHDLLQA--IQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ L+T LLQ + G V GI+ D+R++ E F A++G +DGHDF+ Sbjct: 1 MSELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + A+ KGA VVN + S P+ V D L A LA + R R II +TGSV Sbjct: 61 VAAIAKGALCAVVNREFAVSHPE--FPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ LS K + G+YNN IGVP TL + D DF + E+ M GEI Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP + VI + AH+ + IA AK E+ + T LN+D+ Sbjct: 179 LTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNRRLMSTAT 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + T G + + + + + L Sbjct: 239 QVWSGTTITYGLEGGILQGELLGHETIRVAGIELPLPLPGSHNASNFL---------AAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L ++ + LS + R + L+DE+YNA S + Sbjct: 290 AVLRAIAGWETSAEELYAPLSTGLSLQMPQGRAKRYHLAQDILLLDETYNAGLEST---L 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L ++ R IAVLG M E+GE S FH + N+ +++ A Sbjct: 347 AALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGLFILADLAE--AQA 404 Query: 418 LPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + V + L + + L GD V+ K+SNS G R++ Sbjct: 405 MAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458 >gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 492 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 196/497 (39%), Gaps = 50/497 (10%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G V+G++IDSR F IKG DGH FI ++ Sbjct: 4 MSLQEITTACGGTYYGEPSLLTREVSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA + + S S P V AL +A R ++ I+GSVGKT+T Sbjct: 64 QGALCTLSEHPL-----SDSFPYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTST 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L G++NN IG+PLT+ ++ + + + E+G+S E+ L + Sbjct: 119 KEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVA 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--- 239 +P I V+T I HL N + + AK E+F +I LN DD + Sbjct: 179 QPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRPGASIILNGDDDKLSEIATVHAAS 238 Query: 240 --------------------------HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWM 272 G T FGK + F + + + + Sbjct: 239 FSKQDGTTVVPYSDSTHDETSAASAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSC 298 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++ V+ G HM N L + L +D + P GR Sbjct: 299 KIHAPAGDFTVIISIPGAHMVYNALAGTAVGIELGLTLDEIKTGIEALQPVAGRNHMIE- 357 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 T++D+ YNANP SMKA++ VLS +A+LGDM E+G H ++ Sbjct: 358 ---TEHLTILDDCYNANPVSMKASLDVLSTALTRK----VAILGDMFELGTKELLLHREV 410 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + G A+ D + Y ET + + S + + D + Sbjct: 411 GTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTI 470 Query: 448 VVKSSNSCGFYRLINLL 464 +VK+S+ F +++ L Sbjct: 471 LVKASHGMAFEEIVHAL 487 >gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14163] gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14163] Length = 455 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 127/455 (27%), Positives = 208/455 (45%), Gaps = 13/455 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++A+ G + + + ISIDSR++ + F + G D H F+ A + GA Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + G + V+D AL + R R ++ ITGSVGKTTT+EM+ Sbjct: 66 ASLTSEHDTCPEGITGA-LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ALS+ +T+ ++N+ +GVP+T++ + + G+ ELGMS GE+ + + R Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEVIADIARVDT 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I H+ N E I K I +G++K GT+FLN D+ ++AK Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD----GCE 240 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +G N ++ + ++ + VV +G H N L L + Sbjct: 241 TSFYGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A +AL F K + +G T+ID++YNA+P SMKA I VL+ ++ Sbjct: 301 HVPLADAAEALKTFDG----FKNRQQIYEKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 IAVL DM E+GE + FH ++ L + V G + + + Sbjct: 357 KRR--IAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYGALAKEIARGVEGKVKTTV 414 Query: 427 S--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 E + + +++ L +GD V+ K SNS Sbjct: 415 FEEEQKEEMTEYLEKLLREGDAVLFKGSNSMKLGE 449 >gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] Length = 470 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 251/471 (53%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT + A G +IG VNGISID+RSIA + F A+K DGHDF+ A Sbjct: 1 MT-LWTAEETAAATGGVAIG---DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V+ S P+ V+DV L L A R R+ A +IA+TGSVGKT Sbjct: 56 LEKGAGAALVSR--RPEGVSEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L Sbjct: 114 STKEMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKA 237 RPH+A++TT+AP HL F GIE IA+ KA I +GLE G LN D + + Sbjct: 174 QARPHVAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEPGGVAVLNADIAEAPILQAVAG 233 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ G + + + E G+ + +G H A N L Sbjct: 234 RAAQDVQWFGTGQGPIAPSYRLVATTLRGDETEAEVTLPGGQGHRLQIQSLGAHFAMNAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKA 355 L ++ L D+ A+++LS++ P GRG R + QG L+D+SYNANP S+ A Sbjct: 294 GALACLAALDLDLTKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAA 353 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++VL+ EGRRIA LGDM E+G + H LA++ ++ ++ V G + AL Sbjct: 354 ALAVLAATP--CEGRRIAYLGDMKELGPQEAALHAALADLPAMADLDAVHCIGPLMGALH 411 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ALP + + + + + GDVV+ K S S ++++ + E Sbjct: 412 AALPADKRRGHYASSADVLADLPGQIGAGDVVLAKGSLSMALAKVVDGIRE 462 >gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nitrobacter hamburgensis X14] gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrobacter hamburgensis X14] Length = 478 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 205/470 (43%), Positives = 269/470 (57%), Gaps = 3/470 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ PLWT + A++ G +P + GISIDSR+I P + +FAIKG +DGH F+ Sbjct: 1 MSEPLWTLDVMAAAMRAERRGALP-AAITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA L V+ + P+ VDDVL AL LA A+R R A +IA+TGSVGK Sbjct: 60 ALKAGAALAVIEAAQRDKFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+TKE L L + KT+A + S+NNH GVPLTLAR P D F IFE+GM+H GEI L Sbjct: 119 TSTKEALRSVLGAQGKTHASVASFNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPHIA+ITT+ P HL FSGIE IA AKAEIFEG+E G + LN D++ F L+ ++ Sbjct: 179 KMVRPHIAIITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGAVVLNRDNAQFARLQRRA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 LGI I SFG + AD +L S + ++ G + G HMA N L Sbjct: 239 KKLGIAKIVSFGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L S+ AD+ A ALS P GRG R+ + G TLIDESYNANPASM AA++V Sbjct: 299 LAAASLAGADLALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q + RRIAVLGDM E+G H L E ++ I V+ G + L DAL Sbjct: 359 LGQAGVGTQSRRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMRNLWDALS 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+E L + +++ GDV++VK S ++ L + FP Sbjct: 419 SGKRGGYAEGSVALESQVVAAIRAGDVIMVKGSLGSRMKVIVTALEKRFP 468 >gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF) [Rickettsia prowazekii str. Madrid E] gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL- 2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF) [Rickettsia prowazekii] gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia prowazekii Rp22] Length = 449 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 141/463 (30%), Positives = 228/463 (49%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ N + +S+ + + F A++G DGHD+I A Sbjct: 1 MI--WNSKTLSIALGIEI---SNSVNCNEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ + + + V++ AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGATAVIVSKQVEINDKD---KIILVNNSFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L I L +A G++NN++G+ + LA M D ++ IFELGM+H GEI L Sbjct: 112 STKEALKILLQHDFIVFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHQGEISELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+I I+ AHL F +EEIA AK EIF+ K +N ++ + + + Sbjct: 172 ILKPNIAMINNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I IYSFG S A +L +K EQ ++ + K +++ I H A N L Sbjct: 232 NLSITNIYSFGHSSKASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFANNYTGVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL I+ + + K +N +I + YNA+P SMKAA+ L Sbjct: 292 LIIDILG----KDIEISAKYLADIALTKGRGKIINIQNSRVICDYYNASPQSMKAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + +++G+M E+G SQ H +L + + V+L G + + D LP Sbjct: 348 KQVPADNK---TSIIGEMLELGWNSQRLHEELVPYILDAGCTKVYLVGAYTKYIYDLLPN 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I + + ++ L I +++++K S ++++ Sbjct: 405 KISKKFFKNVEELITHITDLFEYSELILIKGSRGVKLDKIVDY 447 >gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] Length = 458 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 20/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +L + G +G + +S DSR+I P + F A+ GP +DGH ++ Sbjct: 1 MLEAMRLSELQLPLSGRLVG--ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R K + AITGS GKT Sbjct: 59 AAKGAVAALVAREVEGAP----LPQLVVADTRLALGRLGALNREAFKGPVAAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 + KEML L S A G+ NN +G PLTL + + + ELG S +G+I + Sbjct: 115 SVKEMLASILRSAHGHDAVLATRGNLNNDLGAPLTLLELSAEHRSAVIELGASRVGDIAY 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LVRP +++IT AH+ F G E+I AK EI +GL TGT LN DD + Sbjct: 175 TVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGLSATGTAVLNRDDKACPIWAE 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I SFG ++ L G + Sbjct: 235 RVAGK---RIVSFGLDNPLADFSAGSIAYDQRGCPNFVLTGPLGSLRVQLNLLGRHNVAN 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + ++ + R + LID+SYNANPAS+ AAI Sbjct: 292 ALAAAAAAHALGITAEAV-VAGLQGLQPVKGRAVAQMLANGVRLIDDSYNANPASICAAI 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + GR I VLGDM E+GE ++ H D+ + + ++ G + A Sbjct: 351 DVLASFA----GRTILVLGDMGELGEWAEQGHRDVGAYAA-GKVDTLYAVGPLMAHAVAA 405 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L +++ G +++K S S ++++ L Sbjct: 406 FGQGAR--HFPDQASLIESLRAEQGSGTTILIKGSRSAAMDKVVDAL 450 >gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. JDR-2] gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. JDR-2] Length = 459 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 124/461 (26%), Positives = 204/461 (44%), Gaps = 10/461 (2%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + P + G+S D+RSI P + F + G ++DGH ++ A+Q+GA + T Sbjct: 2 CGARAYKGEP-VRIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETK 60 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 P+ V D L AL +LA + R +I ITGS GKTTTK+M+ L + Sbjct: 61 RELPQELADAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLGTA 120 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 K + G+ NNHIG+PLT+ ++ + D + E+GMS GEI LT++ RP +AVIT I Sbjct: 121 YKVHKTAGNLNNHIGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIG 180 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL E IA AK EI GL G + N D+ A + +FG Sbjct: 181 DAHLLQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQLQTFGLG 240 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 ++ D+ + + S V+ +G+ + I N+ L ++I + Sbjct: 241 ESNDWSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGRRFGISE 300 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + E G R + +++++YNANP +++AAI ++ Q+S Sbjct: 301 ENIRNGLIGLELTGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLSGFRRKW--I 358 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIHVHY 426 VLGDM E+G +S H + ++ V G + + + Sbjct: 359 VLGDMRELGPEEESLHFETGAYITPDKADAVITFGPLSEHTSAGALSQFPAEAKGTAIVH 418 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L +++ + D+V+VK S +++ L Sbjct: 419 FDDKGKLGEWLREQVEPQDLVLVKGSRGVRMEQIVQTLEAR 459 >gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 492 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 196/497 (39%), Gaps = 50/497 (10%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ A G G V+G++IDSR F IKG DGH FI ++ Sbjct: 4 MSLQEITTACGGTYYGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA + + S P V AL +A R ++ I+GSVGKT+T Sbjct: 64 QGALCTLSEHPLSDSS-----PYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTST 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L G++NN IG+PLT+ ++ + + + E+G+S E+ L + Sbjct: 119 KEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIA 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--- 239 +P I V+T I HL N + + AK E+F +I LN DD + Sbjct: 179 QPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRSGASIILNGDDDKLSEIATVHAAS 238 Query: 240 --------------------------HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWM 272 G T FGK + F + + + + Sbjct: 239 FSKQDGTTVVPYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSC 298 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 ++ V+ G HM N L + + L +D + P GR Sbjct: 299 KIHTPAGDFTVIISIPGAHMVYNALAGIAVGIELGLTLDEIKTGIEALQPVAGRNHMIE- 357 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 T++D+ YNANP SMKA++ VLS +A+LGDM E+G H ++ Sbjct: 358 ---TEHLTILDDCYNANPVSMKASLDVLSTALTRK----VAILGDMFELGTKELLLHREV 410 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + G A+ D + Y ET + + S + + D + Sbjct: 411 GTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTI 470 Query: 448 VVKSSNSCGFYRLINLL 464 +VK+S+ F +++ L Sbjct: 471 LVKASHGMAFEEIVHAL 487 >gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 463 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 14/469 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW + +A++G V ++ DSR I + FFA+KG DGH+++ A Sbjct: 1 MKALWQSEAIARAVKGT---ASADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA VV + + P VDD AL LAVA+R R+ II ITGSVGKT Sbjct: 58 FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110 Query: 121 TTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +TKE L + + +K + + SYNNH+GVPL+LARMP + FGIFE+GM+H GE+ L Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV+P +A+IT IAPAH + F+ IA AK+EIFEGL G + +D + +LL AK Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + ++ + + ++ + + H N + Sbjct: 231 AQEKKAEIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L +V + D+ A AL +GRG+R+ + G +IDESYNANPASM A I Sbjct: 291 VLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIK 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + RRI +LGDM E+G+ S ++H LA+ LS + HV L G + AL+++L Sbjct: 351 ALENEP--KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEESL 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I E D + L D+++VK SNS G +++ L ++ Sbjct: 409 AGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSAVVSSLSKK 457 >gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 458 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 123/469 (26%), Positives = 204/469 (43%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + G G +N I ID++ I P F A+ G +D H FI A Sbjct: 1 MISL-SLKKIALITNGTLYG--ADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++K V ++ +P V++ AL ++A R ++KA I+AITGS GKT Sbjct: 58 LKKKCAAFVTQKNIKPH-----VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L T + I + NN+IGVP+TL ++ + +G+ ELG S GEI + ++ Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I +I I AHL F + ++ AK+EIF GL+ T+ +N D F K Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQW-KKDI 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K K ++F K + + + + +GY N L Sbjct: 232 KNSNILFFSIKKKKYSNFFCSNIKIHIHSTSFTMHTPCGKINISLPFLGYQNISNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + L R + + LID++YN+N +SM +AI VL Sbjct: 292 AFSFALKIPLKKIKIGLLDTPIVSKR---LESIILEPNKILIDDTYNSNVSSMISAIKVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G +I V GDM E+GE S +H + + I+ ++ G + Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467 + L ++++ ++VK S S +++ L++E Sbjct: 405 GK---HFLNKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450 >gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 468 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 221/471 (46%), Gaps = 16/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M T+ ++ A G V V I+ D+R + + F A++G ++DG F Sbjct: 1 MKNGLTWDEICAATDASVRRGGVAGDTVLPITTDTRKVEAGDLFVALRGENFDGTAFAAE 60 Query: 60 AVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 A+++GA V+V+ AS + + V +D L A +A A R++ ++AITG Sbjct: 61 ALERGAAAVLVDQKTPASVLAALNAAHGGVLVAEDTLRAYQDIAHAWRMKFNIPVVAITG 120 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKTTTK++ LS K +YNN +G+PLTL + + + E+GM +G+I Sbjct: 121 SNGKTTTKDLTAAVLSGRGKVCRTAANYNNEVGLPLTLLSITPEDTAAVVEIGMRGMGQI 180 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L + P I ++T + H+ IE IA AKAE+ + GT+ LN DD + Sbjct: 181 AALAPIAEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAGM 240 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ A + ++G S AD + + ++ S V G+ E G H N Sbjct: 241 RS--SAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSN 298 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L +L + L+ ++ R + ++ +TLI+++YNA+P+SM+A Sbjct: 299 ALAALAAGFVLGMTPQEMQEGLTHLTAEKMRYEVHQVGA----WTLINDAYNASPSSMRA 354 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 ++ + + P GRR+AVLGDM E+G +++ H D+ ++ + V G Sbjct: 355 SLETTAALYP---GRRVAVLGDMLELGTAAEAAHRDVGRRVAELGFAMVVTYGRQAQWTH 411 Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + ++ + +++ L+DGD V+ K S ++I L Sbjct: 412 ETAEAAGCPDCCHAASHADAAAYLRRHLMDGDTVLFKGSRGMRMEQIIAAL 462 >gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] Length = 444 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 207/470 (44%), Gaps = 35/470 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + ++ +Q +S G + G++ DSR + + F A+ H DGH +I A+ GA Sbjct: 4 SLKNIASVLQANSQG---DADITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGA 59 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+V+ + IP V D L AL +L R +IAITGS GKTTTK+M Sbjct: 60 VAVLVDDQHA---ITPDIPAIIVPDTLLALQRLGQYRREMVNPKVIAITGSNGKTTTKDM 116 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 LS+ KT+ +YNN IGVP+TL MP D + + ELGM G++ L+HLV P Sbjct: 117 TAAILSTKFKTFKTPENYNNEIGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPD 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I AH+ F + IA AK EI +GL+ G + + +D+ KS Sbjct: 177 IAIITMIGEAHIEFFQTRDNIARAKLEITQGLKSDGILLVPFDEPLLTQAAVKSDR---- 232 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + + + +G + N L + + Sbjct: 233 ------------QYFGEKVSAIQALATVTTFTFEQQKFAIPVMGRYNVMNALAAISAGKL 280 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L+ D+ A AL F + R + LI + YNANP ++ A +S L + Sbjct: 281 LSIDLKHAALALKNF---DLTKNRTERLVTSQGVVLISDVYNANPTAVAAVLSTLKSLPA 337 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419 + VLGDM E+G + H +L + ++ V+L G + Sbjct: 338 RRK---YVVLGDMLELGTQANHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKMGV 394 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 +H++ ++ + L + + GDV+++K+S+ ++ L E P Sbjct: 395 ERVHLYQTDQLKQLASDLLAISQPGDVILLKASHGIHLEEVVQQLTSEQP 444 >gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] Length = 485 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 132/447 (29%), Positives = 198/447 (44%), Gaps = 24/447 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 I+ D+R+I + F A+ G ++DGHD+I AV +GA +V+ + S IP Sbjct: 56 TRIATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRPI-----STDIPQLV 110 Query: 88 VDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D AL +LA R + K T+IAITGS GKTT KEML + T G+ NN Sbjct: 111 VNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNND 170 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 +GVP+ L + + I ELG +H+GEI + T +V+P +A I I AHL F E I Sbjct: 171 LGVPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGI 230 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 KAEI+ L + + D F L+ + I N D Sbjct: 231 CQTKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIGF----GNTDVSASHLDVE 286 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E+S ++ + + ++ G H N L L D++ + L P +GR Sbjct: 287 PERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIDINDIVVGLENARPAKGR 346 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 G LID++YNANP S+ +++ G ++ VLGD+ E+G+ + Sbjct: 347 LNSQ----LLGMHRLIDDTYNANPHSV----RAAAKVLAAQTGTQVMVLGDIAELGDAAV 398 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD- 443 S H L ++ I+ + G + I H D L ++Q L + Sbjct: 399 SEHQSLGRTIATTGINVLLCVGEYAPYTVAGAQEISDISAHAFTDKDSLLQYLQPYLQEP 458 Query: 444 ---GDVVVVKSSNSCGFYRLINLLLEE 467 V+ K S S LIN L+EE Sbjct: 459 QAQPCTVLFKGSRSMEMETLINALVEE 485 >gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] Length = 453 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 209/466 (44%), Gaps = 23/466 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + +QG +G ++ +S D+R I P+ F A+ G +D H F A+ GA Sbjct: 6 LSTISHVVQGQLLG--ADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V + + + V + AL KL + + IAITGS GKTT KEM+ Sbjct: 64 ALMVERAL-----DVDVAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMV 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ + G++NN IGVPLTL R DF + ELG +H+GEI + T LV+P + Sbjct: 119 ASILSAKGQVLYTAGNFNNDIGVPLTLLRSSQKDDFAVIELGANHIGEIAYTTQLVKPDV 178 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A++ +A AHL F ++ + AK EI++GL T +N D EL ++ Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAPGKTALVNLDSHGGELW-SQVLVDKHVK 237 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +S + F + + ++ + V +G H N L + + Sbjct: 238 TFSVNQQNADFFASQIALNQAGEASFILHTPQGEQPVTLGILGQHNVSNALAASALAMEM 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A ++ L+ +GR + LID+SYNA+ +MKAAI +L+ S Sbjct: 298 GASIEEVAVGLAQLSAVKGRVDVSQLT---PMIRLIDDSYNASVPAMKAAIELLASFS-- 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 G R +LG+M E+G S + H + E + + +V G + + Sbjct: 353 --GCRWLILGNMAELGTESLALHQQVGEHAAPFQFDYVLTYGEDARVISQ----QCQGQH 406 Query: 427 SETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 T + FI+ L V++VK +NS G +++ L E+F Sbjct: 407 FSTHQDMLTFIEQQLEVRASQSHVLLVKGANSSGMSKIVAALKEKF 452 >gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 451 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 200/468 (42%), Gaps = 29/468 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M T L + + I + GI D+R + P E F A+ G +DGH F+ Sbjct: 1 MTVTATLSQLAAVLSASLVNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ +GA +V+ + +PV V + L A +LA R + +I +TGSV Sbjct: 61 EMAITRGAVAAIVD----YTYNYPDLPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L + K + G++NN IGVP TL + DF + E+ M G+I Sbjct: 117 GKTTTKELIAAVLGTRGKVHKTHGNFNNEIGVPKTLLELSQGDDFAVIEMAMRGRGQIAE 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LTH+ +P+I VIT + AH+ + IA AK E+ + LNYD+ Sbjct: 177 LTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMPNDSVAVLNYDNPLLMATAK 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + + G + +++ M + G H N L Sbjct: 237 QVWSGEVISYGFSGGD------------IQGKLVDYQKVEVGGMTLPLPLAGVHNGSNFL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + +L D ++ R + ++DE+YNA P +M AA+ Sbjct: 285 AALAVAKVLGVDWKLLEAGIN----VTMPQGRSQSWKLPRDIMILDETYNAAPEAMLAAL 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415 +L+Q + IAVLG M E+GE S H + E + N+ V + G + Sbjct: 341 ELLAQTPGRRK---IAVLGAMKELGERSTKLHQQVGETVKKLNLDGLLVLVDGPDAETIV 397 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + I L +++ + GD ++ K+++S G +++ Sbjct: 398 TSA-QGIPCERCHNHSDLVSLLKTYVQPGDRLLFKAAHSVGLEKVVQQ 444 >gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2] gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2] Length = 486 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 208/468 (44%), Gaps = 12/468 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W D+ +A+ V + +G+S DSR+I Q+ F A++G +DGH FI V++G Sbjct: 7 WRVADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV F VD+ L AL LA RLR+ ++AITGS GKT+T++ Sbjct: 67 VRGFVVKKGQKIPKDVPGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTRK 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M T G+ NN IG+PLTL + +D ++ + E+GM+H GEI L + P Sbjct: 127 MTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLDHEWAVVEMGMNHGGEIHRLGSIALP 186 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I VIT + HL +E +A AKAE+ + G+ LN DD F + A A Sbjct: 187 DIGVITNTSHCHLEGLGTVEGVARAKAELLPHVRVHGSAVLNLDDPRFPIFSAAVRANTA 246 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLMTL 300 + +++ + EV H M N L Sbjct: 247 IENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVFLHTPARFMVSNALAAA 306 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +D + L F P+ GR T+ID++YNANP S+ AA+ L Sbjct: 307 GAALAAGISMDVIKQGLEAFEPEPGRMH---LEPGFNHTTIIDDTYNANPGSVGAALETL 363 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALP 419 +++ +G G IAVLGDM E+G ++ FH ++ + + IS ++ G + A+ Sbjct: 364 ERVTQNGVG--IAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGPMADHVIHGAVK 421 Query: 420 RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + T D + + + + ++VK S ++++ L Sbjct: 422 AGFPGSAAMTGTRDEIAADLLAHTPENAWILVKGSRGMRLEKIVSQLK 469 >gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida F1] gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas putida F1] Length = 455 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 208/464 (44%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L A++G IG G+SIDSRS++ + F A+ GP +DGHD++ Sbjct: 1 MLKPLSLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V AL +L R ++AITGS GKT Sbjct: 59 KAKGAVAALVEREVAG----VDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEIR+ Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P + +I AH+ F G ++I AK EI EGL + G LN DD F++ KA++ Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGGIAILNLDDKAFDIWKARAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + + + + G+++ V + +G H N L Sbjct: 235 AHKVVSFARSNPKADFHASDIG-RDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ P +GR + +ID+SYNANP SM AAI +L Sbjct: 294 AAAHAVGLSLSGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPTSMCAAIDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H + + + ++ G ++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAFGA 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L + + +++K S S ++ L Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447 >gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] Length = 476 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 120/442 (27%), Positives = 186/442 (42%), Gaps = 9/442 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85 + IDSR F A+ G DGH F+ GA VV+ + G+ Sbjct: 34 VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD + A +LA A R R +I I GS GKTTTKEML LS+ G+YNN Sbjct: 94 LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGNYNN 153 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL +M D + + E+G++H GE+ FL+ L +P ++T I HL F ++ Sbjct: 154 HLGVPLTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNIGHEHLEFFGSLDG 213 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A A+A +F LE G D S + G + + + Sbjct: 214 VADAEAALFRYLEAHGGTAFVNLDDHRLAAAGASLSRKTGYGAQPGAGRAWWAEQIGADR 273 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ G V +G H N + + + + L P +G Sbjct: 274 VGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGLAPAHIAEGLGTLLPAKG 333 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + G +++++YNANP S++ A+ L+ I GRRIAVLGDM E+G+ S Sbjct: 334 WKRM--ELFEDGGIVVLNDTYNANPDSVRLALDTLAAI--ECRGRRIAVLGDMLELGDNS 389 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + + + G + + + + TMD L F+ + GD Sbjct: 390 AIEHESIGRYIRQLPLDACLTLGDAAQLICEQAGGRC-LRHFGTMDELRGFLSEYVQPGD 448 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 ++ K S + L+++ Sbjct: 449 ALLFKGSRGMKLELAADDLIKQ 470 >gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arcanobacterium haemolyticum DSM 20595] Length = 470 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 206/474 (43%), Gaps = 15/474 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G V I+ D+R+I+ E F AI G DG+ F A Sbjct: 1 MIGM-TIEQVATCVDGTISTEPADSLVTSIATDNRTISGGELFVAIAGERVDGNRFAQAA 59 Query: 61 VQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAI 113 + GA V+ + + G+ V VDD + AL +LA +I + Sbjct: 60 LDAGAVAVLTADPAAACATGAAPERVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGV 119 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTTK++L L A GS+NN +G+PLT+ R + E+G H+G Sbjct: 120 TGSVGKTTTKDLLAHLLGQRGPIIAPPGSFNNELGMPLTVLRADESTSTLVLEMGADHIG 179 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + +LT +V P ++V+ +A AHL F GIE +A AK+E+ EG + G + LNYDD Sbjct: 180 NLAYLTGIVAPDVSVVLAVARAHLGEFGGIENVARAKSELVEGTREGGVVVLNYDDERVR 239 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + L + F S + ++ + + A Sbjct: 240 DMAK----LAPGKVVYFSASGACRDGVWASDVTLNKTGQASFILHYGQSESRVELKLIGA 295 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 ++ L ++ + + T+ID+SYNANP SM Sbjct: 296 HHVANALAAATVALVCGIELDDCARLLTEANAGSPHRMDVWERNGTTIIDDSYNANPDSM 355 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVL 412 KA ++ L+ + H IAVLG M E+GE S++ H + E+++ I + G Sbjct: 356 KAGLTALAHLGTHRRK--IAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGPGLSP 413 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + A + VH + + + L +GDVV++K SN G +RL + L E Sbjct: 414 TILTARQGGVEVHETLNVAEATQLLTGLLAEGDVVLLKGSNGSGVWRLADALKE 467 >gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2866] Length = 457 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 134/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA VVV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VAQGAVTVVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] Length = 461 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + V G+SID+R I + I+G +DGH F+ A++ G Sbjct: 8 TLKQVEQMVMGVGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 67 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ ++IPV V+D L AL LA + R + +I +TGS GKT+TK+ Sbjct: 68 AVATLWKKNV--QNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 125 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 126 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 185 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + + IA AK EI GL+ G N D+ + Sbjct: 186 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTNRVPSMNLAAE 245 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ ++ + ++ ++ + +G H N L ++ I Sbjct: 246 TI--TFGDARANNYYPTSVTLQATGTYFKMNQDENIVFY-LPVLGKHNVYNTLASMAIAK 302 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R + T+I+++YNA+P +M+AA +++ + Sbjct: 303 YFGVTWEEMKQGL---VTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 359 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 360 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 417 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q + DVV+VK+S +I +L Sbjct: 418 ERVKVYDNKEELVKNLQEVVDVKDVVLVKASRGMKLEEVITMLK 461 >gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14673] gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14673] Length = 455 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 127/455 (27%), Positives = 208/455 (45%), Gaps = 13/455 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++A+ G + + + ISIDSR++ + F + G D H F+ A + GA Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + G + V+D AL + R R ++ ITGSVGKTTT+EM+ Sbjct: 66 ASLTSEHDTCPEGITGA-LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 ALS+ +T+ ++N+ +GVP+T++ + + G+ ELGMS GE+ + + R Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEVIADIARVDT 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I H+ N E I K I +G++K GT+FLN D+ ++AK Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD----GCE 240 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +G N ++ + ++ + VV +G H N L L + Sbjct: 241 TSFYGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A +AL F K + +G T+ID++YNA+P SMKA I VL+ ++ Sbjct: 301 HVPLADAAEALKTFDG----FKNRQQIYEKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 IAVL DM E+GE + FH ++ L + V G + + + Sbjct: 357 KRR--IAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYGALAKEIARGVEGKVKTTV 414 Query: 427 S--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 E + + +++ L +GD V+ K SNS Sbjct: 415 FEEEQKEEMTEYLEKLLREGDAVLFKGSNSMKLGE 449 >gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] Length = 458 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 14/464 (3%) Query: 6 TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q + V G+SID+R I + I+G +DGH F+ A++ G Sbjct: 5 TLKQVEQMVMGVGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ ++IPV V+D L AL LA + R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWKKNV--QNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++T L++ K G++NNHIG+PLT+ + + + + E+GMS GEI FL+ L RP Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + A+IT I AHL + + IA AK EI GL+ G N D+ + Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTNRVPSMNLAAE 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG ++ ++ + ++ ++ + +G H N L ++ I Sbjct: 243 TI--TFGDARANNYYPTSVTLQATGTYFKMNQDENIVFY-LPVLGKHNVYNTLASMAIAK 299 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L + G R + T+I+++YNA+P +M+AA +++ + Sbjct: 300 YFGVTWEEMKQGL---VTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421 + I VLGDM E+G+ FH ++ +++ IS+V+ G + + + Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q + DVV+VK+S +I +L Sbjct: 415 ERVKVYDNKEELVKNLQEVVDVKDVVLVKASRGMKLEEVITMLK 458 >gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC0288-04] gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC0288-04] Length = 457 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 131/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ I D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLILAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 469 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 131/477 (27%), Positives = 208/477 (43%), Gaps = 21/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ + + + G P+ V DSR P F A+ G DGHD+ L Sbjct: 1 MQPML-LSTIAEVVGGTLADAPDPEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYAL 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGS 116 AV+ GA V+ + +P VDDVL A +L A I+AITGS Sbjct: 60 SAVKAGAAAVLATRP-------VGVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+++ L + + A S+NN IG+PLT++ D+ + E+G +G IR Sbjct: 113 AGKTSTKDLIAQLLPAAGRVVATPESFNNEIGLPLTISMADPSTDYLVLEMGARGIGHIR 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + PHI+V+T + AH+ F G ++IA AK EI E L +G LN DD + Sbjct: 173 DLTRIAPPHISVVTNVGTAHIGEFGGRDKIAVAKGEIVEALPASGLAVLNADDPLVLAMA 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A++ A + SFG S A + + + V + + Sbjct: 233 ARTTA----RVSSFGLSDEATVRATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSN 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + V+ I A + R + T+++++YNANP SM+++ Sbjct: 289 SLAAAAVAREAGLSVADI-ADLLSAATARSRWRMEVSARADGVTVVNDAYNANPDSMRSS 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK 415 + L+ ++ E R IAVLG M E+G S++ H + + + ++ + G ++ Sbjct: 348 LEALATMARGPEQRAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIVFVGGEEAGWMR 407 Query: 416 D---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 A + D + +L GDVV+VK+S RL LL+ P Sbjct: 408 QAAAAAGAGGRAVHVPDQDAALQHLSDTLRAGDVVLVKASRGIQLQRLAERLLQPDP 464 >gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 457 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + S+S+P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999] Length = 469 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 203/468 (43%), Gaps = 18/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + D+ Q + G G + +S D+R I+ F A+ GP+++GH F A Sbjct: 1 MINL-SLIDIAQQVNGTLQGN--DLIITNVSTDTREISADSLFIALVGPNFNGHVFANEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 Q GA ++ + + A + PV V+D AL L + + + ITGS GKT Sbjct: 58 RQNGAVAMIASEPVEAHM-----PVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM T L + G++NN IGVPLTL R+ + ++ + E+G +H+GEI + T Sbjct: 113 TVKEMTTAILKECGSVLSTQGNFNNDIGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A I A +HL F + +A AK+EIF+GL K+GT LNYD F++ K Sbjct: 173 LVKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKGLSKSGTAILNYDSQFYDFWLGKLD 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + + E+ N+ L Sbjct: 233 NELIYSFSLNSAPGKGADYSASQVGLAFNGCAHFIMHTPIGEMNIEL-TLPGIHNVGNAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ + + R L+D+SYNAN AS+ AAI +L Sbjct: 292 LAAALSINVGASLENVRDGLAKIQHVKGRLEVKQLSEKVRLLDDSYNANVASVTAAIKLL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 EGRR+ VLGDM E+G+ ++ +H + E+ +I + G + D Sbjct: 352 ----SSYEGRRVLVLGDMAELGDQARHYHEQVGELAKSESIEMFYTLGELSKSASDMFGE 407 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLL 465 + ++ L + L D ++VK S S R++ + Sbjct: 408 G--GQHFSHIEPLLDALYKELYANDNEFTILVKGSRSSRMDRVVTAIE 453 >gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] Length = 453 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 206/464 (44%), Gaps = 18/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L++ +G I +++G +IDSR I + F IKG DGH FI A +KG Sbjct: 5 SLEQLVKITEGRLIQTGTTDWISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGC 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 T+ + I V V+ L A+ LA R R +IA+TGS GKTTTK++ Sbjct: 65 STSFTETEALDF--PEGISVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDL 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS KT G++NN G+P TL + + + + E+GM HL +IR VRPH Sbjct: 123 IASVLSQKYKTLKTQGNFNNEYGIPQTLFNLQPEHEIAVIEMGMDHLDDIRKSIGEVRPH 182 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I+VIT I AH+ + I +AK EIFE + LN DD + +K + Sbjct: 183 ISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDIALLNGDDVYLNKIKEDEEPFSVV 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G+ + + + S ++ G H N L + + Sbjct: 243 RVGIKGEDLSL------KAEQVDSSAQGIRFVADGEHFHFAYPGIHNVYNCLTAIWLGRY 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L F P R R T+I++SYNANP +MKAA+ +L + Sbjct: 297 YQMTHEEIQRGLDAFKPSGNRMDIVRVRE----ATVINDSYNANPDAMKAALDMLWDMGK 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 +AVLGDM EMGE+++S H+++ + + G A S Sbjct: 353 SCRR--LAVLGDMLEMGEMAESGHLEIGAYAAE-KADVLIAVGPESKAYIKGAGASLADE 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ +G ++ + GDV+++K+S + + ++ E Sbjct: 410 RCFWTADAEGAGKLLRKLMAPGDVILIKASRGVHLEKTLKMIQE 453 >gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 457 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQTKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + S+S+P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGAKLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] Length = 458 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 133/465 (28%), Positives = 215/465 (46%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + L + G + G + I+ D+R+I + F A+KGP++DGH+++ A + Sbjct: 3 LSLQALAERFGGEIVYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVATR 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA +V T +L +P + V D AL +L +A+R + +I +TGS GKTT Sbjct: 63 KGAAAAIVETP----NTNLDLPQWCVGDSYKALGELGLASREKFNGKVIGVTGSCGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K ML S T A G+ NNHIGVPL+L R+ + F + E G S EI++L L+ Sbjct: 119 KGMLAAICSLAGSTVATRGNLNNHIGVPLSLMRLANEHQFAVIEAGTSGPNEIKYLAELI 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +PH+A++ I P H+ F +E IA KA ++ GL + G LN + L Sbjct: 179 QPHVAIVNNIMPVHVEGFGSVEAIAIDKAHLYRGLVEGGVGVLNVASAQQPTLLDALQGK 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I + A+ +++ +Q ++ ++G+ +E+ +G H N L Sbjct: 239 KITRFNPELTDEAAEVRVQNIEQDTFGRAEFSAIIEGEEVELKLGVLGAHNVANALAAAS 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + V+ + L + +GR + R T+ID++YNA+P S+KAAI + Sbjct: 299 AARAVGISVELIKRGLEKYTGDKGRMQLARVNEK---LTVIDDTYNASPGSVKAAIDYAA 355 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 Q VLGDM E+GE+ S H ++ I +W +G Sbjct: 356 QFERSA-----IVLGDMGELGEMRNSAHEEIGRYAQQKQIKQLWCTGEASRFTAQGY--G 408 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 H + E + L + VV+VK S S +++N LL Sbjct: 409 PHAKWFEDKEQLKQALPMLCSSEVVVLVKGSRSTRMEQIVNALLA 453 >gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] Length = 464 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 127/478 (26%), Positives = 203/478 (42%), Gaps = 24/478 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +L IG V +S D+R + FFA+KG ++D HD++ A Sbjct: 1 MIKLST-KELADIFSARLIG-AKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G VVV + + +P V D AL +LA R++ IAITGS GKT Sbjct: 59 VEQGCSAVVVEREC-----DVDVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + G++NN IGVPLTL R+ F + ELG +H GEI Sbjct: 114 TVKEMTASILQKVAQDPDAVLFTQGNFNNDIGVPLTLLRLESKHKFAVIELGANHQGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + LV+P +A++ +A AHL F +E +A AK EI++GL + G + Y+ S K Sbjct: 174 YTVDLVQPDVALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIMEYEHSVRYQKK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 +G F + + +E + E+ + + N+ Sbjct: 234 YWYEQIGNADTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKINLPYLGLH-NV 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + S+ + + + K R L+D++YNAN +S+ Sbjct: 293 SNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTYNANVSSL--- 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 S + + + + RI +GDM E+G S S H +A+ + N+ V G + Sbjct: 350 KSAIDVLRQYDKFFRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVISS 409 Query: 417 ALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 A + L +I Q V++VK + +INL+ ++F Sbjct: 410 A----CDGVHFSDKTELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKFQ 463 >gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] Length = 455 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 202/463 (43%), Gaps = 22/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L A+ G + +G+S DSR++ F A++G +D HDF+ ++ Sbjct: 4 TLAILQSALNG--ARMTADAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNV 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V T L++P V D AL ++A R + K +I +TGS GKTT KEM Sbjct: 62 AAIVAET----VPDGLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEM 117 Query: 126 LTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + L + G++NN IGVPLTL R+ + ELGM+H GEI L+ + Sbjct: 118 IAAILEAACGVDNYLATRGNFNNDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + ++ H + +E +A + GL G DD F L + + Sbjct: 178 EPTVGLVNNAQREHQEFMASVEAVAQENGAVLAGLPADGIAVFPADDEFTPLWRQLAAQR 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG S +AD + + + S ME+ + V G H +N L + Sbjct: 238 KV---LTFGFSDDADVR-CSYSANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIAC 293 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D + L F P GR + L +ID++YNANP S++AAI VL+Q Sbjct: 294 ALAIGIATDAIARGLQAFAPVSGR---LQRKLAANGALVIDDTYNANPDSVRAAIDVLAQ 350 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +S RI VLG+M E+G + +H ++ +I +V G A Sbjct: 351 MSA----PRILVLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLTLGDLTRYAASAFGAG- 405 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ ++++ L + V+VK S R++ LL Sbjct: 406 -ANHYDSVEELNDALAGIFTADATVLVKGSRFMKMERVVQHLL 447 >gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Haemophilus influenzae F3031] gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3031] Length = 457 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + S+S+P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] Length = 947 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 138/451 (30%), Positives = 212/451 (47%), Gaps = 4/451 (0%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G + P + I+S+ + + FFAIKG DG+ F+ + ++ A L VVN Sbjct: 498 SGKIKRLSPLISLKKARINSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQ 557 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 S V + L L ++ R IIAITGS GKTT KE+L L+ I Sbjct: 558 NKLNHS---RQIKVKNTLKFLTNVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNKIS 614 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 K SYNN GVPL+L + +FGI E+GM GEI +L+ ++ P + VIT I Sbjct: 615 KVSISPKSYNNKFGVPLSLFNINQKDEFGILEVGMDKKGEIDYLSKIIEPDVGVITNINY 674 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AH NF I++IA AK+EI + + G I LN DDSFF+L + IK I K+ Sbjct: 675 AHAKNFKNIKQIALAKSEIIDNIRLYGFIVLNADDSFFKLHYNIAKKKNIKVISFGIKNH 734 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 AD +L K ++ + + L K + + N+L L ++SI Sbjct: 735 KADIKLINIKPFRKKFRINISLNNKRKYFLLSNDFQNNIYNILSALAVISIYKNIFKLDK 794 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 F GRG N LID+SYN+NP S+K+AI +I+ + + + Sbjct: 795 NIFYDFKIPGGRGDHSVIKFNNKKINLIDQSYNSNPLSLKSAIKNYDKINLKKSNKYMLI 854 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434 GDM E+G S+ H +A +++ NI V++ G + + ++ + Sbjct: 855 -GDMLELGSHSRRLHRSVAPIINKSNIDKVYVKGKMASIIFKDISKAKKGRILLNKSQII 913 Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I+ L + D +++K+S + GF ++ L Sbjct: 914 ELIRKDLNNNDYLMIKASLATGFNDIVKDLK 944 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 158/449 (35%), Gaps = 36/449 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +GIS D+++I FFAIKG +DG++FI A+ KG+ ++V + + I Sbjct: 19 FSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVTEKKVKSVQN--GILYI 76 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 ++V L + A + +IA+TG+ GK++ L K A IG+ Sbjct: 77 HTNNVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILKLNNKKVASIGTLGVK 136 Query: 147 -----------IGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTI 192 P+ LA++ + E + S G + ++ + + T + Sbjct: 137 SKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNSGIFTNL 196 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 + HL ++ +AK +FE L K + E K K + + Sbjct: 197 SQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLITDQL-IPEFKKIKKITINKRLKLYALN 255 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 K + Q+ E +++L + + IG +N+LM + ++ Sbjct: 256 DKKNNLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAAKNSNIGLNK 315 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + + P EGR ++ N L Y P ++K + L + P + I Sbjct: 316 ILNKIYKLKPVEGRFEKIGKIKNHSKVILD---YAHTPDALKTCLLNLREQFPAKK--II 370 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD---ALPRSIHV 424 + G G ++ Y + L+ + ++ + + Sbjct: 371 VLFG----CGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLENPQKIRRDIKKGIKKKKI 426 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L GD+++V K Sbjct: 427 IEISDRAMAITRAIHDLNSGDILLVAGKG 455 >gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 196/442 (44%), Gaps = 12/442 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85 +SIDSR + F A+ G DGH F+ ++GA +V+V+ + ++ GS P Sbjct: 33 VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D + L +LA R ++ + GS GKTTTKEML LS+ + + + NN Sbjct: 93 LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNN 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVPLTL M + + + E+G++H GE+ LT + RP ++T I HL ++ Sbjct: 153 HLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDG 212 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A A+ +F L++TG +D L+ + +Y + Sbjct: 213 VARAERALFSFLDETGGTIFVNNDD--PRLRDAATDPQRHILYGMHCGDCCSCRGGALSV 270 Query: 266 CSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S + + E+ + G H N L + + + L Sbjct: 271 LPDGSLRFMLYSERGDEEIRLNFTGRHNVLNALAAAAVGIFFGIEPREVRRGLEG--LVP 328 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 G + ++ G TL++++YNANP SM+ AI L + +GRRIAV+GDM E+G+ Sbjct: 329 REGWKRLEVVSAGGVTLLNDTYNANPDSMRLAIDALLDMP--CQGRRIAVIGDMLELGDA 386 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 H + L+ ++ ++ G ++ P H + + LF + L +G Sbjct: 387 GPGEHEATGKYLAGSSVDMIFSFGELAGSICFLNPGRCRGH-FTSREKLFDALSRELEEG 445 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 D V+ K S + +L Sbjct: 446 DTVLFKGSRGMKLEETVTAILA 467 >gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] Length = 455 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 198/464 (42%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +L A+ I +G+SIDSR+I + F A+ GP +DGHD++ Sbjct: 1 MLKALKLSELTNALDARLI--SADASFDGVSIDSRAIKAGQLFIALTGPRFDGHDYLNEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ S +P V D AL +L R + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADST----LPQLLVKDTRQALGQLGALNRAAFTKPVAAVTGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +GVPLTL + + + ELG S LGEI + Sbjct: 115 TVKEMLASILRTRGSVHATRGNLNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVG 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +PH+A++ AH+ F G E+I AK EI EGL G LN DD F + K ++ Sbjct: 175 LTKPHVAILNNAGTAHVGEFGGPEKIVEAKGEIIEGLAADGVAVLNLDDKAFGIWKTRAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + + V + +G H N + Sbjct: 235 GRKVLTFALSNTQADFHASDLATDA-RGCPAFNLHSPEGVERVQLNLLGTHNVANAMAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + L P +GR +ID++YNANP SM AA+ +L Sbjct: 294 AAAHALGVSLFGIATGLGAVQPVKGRTVAQLAKNG---MRVIDDTYNANPTSMCAAVDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+G+ ++ H D+ E +S ++ G +++ A Sbjct: 351 AGFS----GRTVLVLGDIGELGDWAEQGHRDVGEYA-RGKVSALYAVGPNMVHAVSAF-- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + T L + + +++K S S ++ L Sbjct: 404 GNEAQHFGTQAELIQALGAEQDTNTTILIKGSRSAAMENIVAAL 447 >gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] Length = 478 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 189/461 (40%), Gaps = 16/461 (3%) Query: 15 QGHSIGIVPQGFV----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 G G P V + IDSR I E F A+KG DGH F+ A +KGA +V Sbjct: 19 NGQLSGFAPDDPVIFQEPTVVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIV 78 Query: 71 NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + + G D A+ +LA RL+ +I I GS GKTTTKEM Sbjct: 79 SREWFSRQGSSAHEAGARYLVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMT 138 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + + G++NNH+GVPLTL + + + E+G++H GE+ L + P Sbjct: 139 ASVLRARYSVHMSEGNFNNHLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTH 198 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 ++T I HL ++ +A+A+ ++ ++K+G + + L + + Sbjct: 199 GMLTNIGHEHLEFLRDLDGVANAETALYRYVQKSGGVVFVNRED--SRLTEAAAGIPSTV 256 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 Y + ++ + + V G H N + + Sbjct: 257 GYGIALEGEGFWAEDIRMDNLGRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATVGFHF 316 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + L P+EG + T+++++YNANP S++ A+ +L ++ Sbjct: 317 GLTQEEIAGGLERLKPEEGWKRLEFQRAG--GITIVNDTYNANPDSVRNALDLLCELPV- 373 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHVH 425 G+R+AV+GDM E+G +S H ++ + + + G H Sbjct: 374 -TGKRVAVIGDMLELGGVSSPEHEEIGRYAASLDGLDAFYTFGEQAALCCRTAGMKCAGH 432 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L + SL GDV+++K S R+ L+ Sbjct: 433 FM-DHGELQHLLHESLSPGDVLLLKGSRGMKLERVAEGLMN 472 >gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa DY-18] gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa DY-18] Length = 539 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 122/479 (25%), Positives = 201/479 (41%), Gaps = 24/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L + +++A G +IG Q + + + DSR + F A G DGH FI Sbjct: 1 MIKL-SAAQIIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFI 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAI 113 A ++GA L +V +++ G + P V DV+ A+ LA R + + T+I I Sbjct: 60 PMAFERGATLALVEREVLDEQG-MPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTK++L + T A +GSYN+ +GVPLT+ R + + E+G H+G Sbjct: 119 TGSAGKTTTKDLLAAIFAPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVG 178 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I +L ++ P I + AH F G++ I K E+ EG++ TG++ LN DD Sbjct: 179 NIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDERVL 238 Query: 234 LLKAKSHALGIK-----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++S A + G+ + E Sbjct: 239 RMASRSVAPITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQ 298 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + + + A ++ R T+I+++YNA Sbjct: 299 LIGEHHVHNLLAAATIAYNSGISGEKIARALNKAAAASKWRMARTDRADGVTVINDAYNA 358 Query: 349 NPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 NP SM AA+ L+Q+ + R AVLG M E+G+ S H + ++ NIS Sbjct: 359 NPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLVVRMNIS 418 Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + +A + +T + +++ + GD+V+ KSSN Sbjct: 419 KLIAVGDETKPIYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGAKL 477 >gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] Length = 471 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 189/473 (39%), Gaps = 18/473 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G S I P V G + IDSR++ P F A +G DGHD+ Sbjct: 1 MIAL-SLAEIAEIVGGQSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + L +P VDDV AL +LA R ++A+TGS G Sbjct: 60 -------QAVAAGAAAVLATRPLGVPAIVVDDVQSALGRLARFVVERLGTKVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT R + + + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLQRKGPTVWTPGSLNNEIGLPLTALRATEETEHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L G + + L Sbjct: 173 TELTPPRIGLVLNVGTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRA 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG++ +A + + V + Sbjct: 233 MASRTKARVLLFGEADDAAVRAENVRLTELGQPTFTLHTPTGCSDVTMRLY-GEHHVSNA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 D+ + AL++ R T+++++YNANP S + Sbjct: 292 LAAAAVAHELDMSASEIALALSEADTLSRWRMEVTERPDGVTVVNDAYNANPES--MRAA 349 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414 + + + R AVLG M E+G+ + H + + N+ + G L Sbjct: 350 LRALAAMGKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 409 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++ L GDVV+VK+S S G R+ LLE Sbjct: 410 AYNEGSWGEESVHVSDAQAAVDLLRRELRPGDVVLVKASRSVGLERIAQALLE 462 >gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 457 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + S+S+P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIS 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQGSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] Length = 452 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 217/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q+ S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQIPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 436 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 132/461 (28%), Positives = 216/461 (46%), Gaps = 29/461 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + + G + + +N IDSR + + F +KG + DGH +I A++KG Sbjct: 1 MDLAQLKKIVNGEFLNLKENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + G V D AL ++ R + KA +I ITG+ GKT+TKE Sbjct: 61 AVGYFSEKPLNFKNG------ILVKDTYQALVEVGKHKRNQVKA-VIGITGTSGKTSTKE 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS++ TYA G+YNN IGVPLTLA +P ++D I E+G +G+I +L +V Sbjct: 114 LMNFVLSNLASTYATQGNYNNEIGVPLTLANIPENIDLTIIEMGAGKVGDIDYLGKMVNQ 173 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I+V+ ++ H+ F E + K EI F D S K + Sbjct: 174 DISVLVSVGHGHVGKFGSFENVIKGKGEI----------FNCGDYSVLPSELKKFYNPK- 222 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G+ D ++R K + + ++ + +E+ + +N+ G++ Sbjct: 223 -NPITYGEDG--DIEIRDIKIVKDGTVGVIKYKNDKIELKIPVYNIGVFKNIGAVAGVLY 279 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D ++ L F GRG+ +N G FT+ID+SYNANP S+K AI +L+ + Sbjct: 280 HFGYDPIKNLEVLKDFKSSSGRGE----IINIGNFTIIDDSYNANPLSVKNAIDILNSM- 334 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 EG +I VLGDM E+G+ SQ H ++ + L++ I ++ L G + + + V Sbjct: 335 ---EGFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGNETKYVFEEIDDKSRV 391 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + DG+ I VV+VK S +I L Sbjct: 392 KHFDNKDGIVEDILKFSNYQPVVLVKGSRGMKMEDVILKLR 432 >gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli WV_060327] gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli RN587/1] Length = 452 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + A N L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 S + L ++S + + V ++VK S S ++ L E Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448 >gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] Length = 487 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 129/487 (26%), Positives = 201/487 (41%), Gaps = 31/487 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHAV 61 T D+L A G + +NG +SR I F I G D H+FI V Sbjct: 4 TVQDILNATNGRLLNGSADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVV 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + GA + G V+D AL + R + I ITGSVGKTT Sbjct: 64 ENGAKAFFIKKGHELPSGIGETAAIEVEDTEAALLDTGLWYREKFNIPFIGITGSVGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ AL S + G+ N+ IG+PLTL + + I E+G+S E+ L Sbjct: 124 TKEMVAAAL-SSINIHKTKGNANSTIGLPLTLFGLEPCNEAAIIEMGISEFHEMEKLVEA 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA---K 238 RP+ A+ T + AH+ N E I K I + +F+N DD + A + Sbjct: 183 GRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFTADSVLFINADDELLMKVAAENSE 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-----YHMA 293 +K I +FG ++ ADF + + ++ E V I H Sbjct: 243 FRPKNVKHIVTFGINEKADFYASSITISDSGTDFVANYKSENGEAVSEQIHLKTLGLHNV 302 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L + + L + K L+ + P GRG + T+ID++YNA+P SM Sbjct: 303 RNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNIIKSNG----LTIIDDTYNASPDSM 358 Query: 354 KAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLS-------LYNISHV 404 KA++ ++ ++ E RR V D+ E+GE +++ H + E + I + Sbjct: 359 KASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHYKVGEYIKFYNKENTENKIDCL 418 Query: 405 WLSGFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 G + + L + + T +++S L GD +VVK S Sbjct: 419 ITVGKDSEQIILGVKSEDLETNPVTRHFSTNVEASDYLKSLLKKGDAIVVKGSRGMQTEE 478 Query: 460 LINLLLE 466 +IN +L Sbjct: 479 IINSILN 485 >gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Azospirillum sp. B510] gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Azospirillum sp. B510] Length = 498 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 193/465 (41%), Positives = 262/465 (56%), Gaps = 2/465 (0%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LWT D A GH G G++IDSR +AP + F AI+GP++DGH F+ A+ Sbjct: 5 TVLWTARDAAAATGGHLTG-PSAWAATGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGAAL 63 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +V+ + + V D L A+ + V AR A II +TGSVGKT Sbjct: 64 AAGAVAALVDHPPDGLPADAPLLIAPV-DPLEAMAAMGVVARANCGARIIGVTGSVGKTG 122 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE L LS+ TYA GS NNH GVPL+LAR+P D +G+FELGM+H GEI L+ Sbjct: 123 TKETLRHVLSAQGATYATEGSLNNHWGVPLSLARLPADSAYGVFELGMNHAGEIGPLSRQ 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+PH+A+ITT+ AHL FSG+E IA AKAEIFEGL+ G LN D+ + L A + Sbjct: 183 VKPHVAIITTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAAARR 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ ++ FG + AD +L + S + ++G+ ++ G H N L L Sbjct: 243 HGLSHVWGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSVLL 302 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V L DV TA +ALS +GRG R R L QG FTLIDESYNA+PA+M A + VL Sbjct: 303 AVKALGGDVATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEVLG 362 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +I P GRR+AVLGDM E+G+ + + HI LAE L + V G H+ AL D LP + Sbjct: 363 KIDPGAGGRRVAVLGDMRELGDRADALHIALAEPLRAAQVDTVHACGPHMRALFDRLPEA 422 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ET L + + + GDV++VK S +++ L Sbjct: 423 MRGVWTETSVELAPIVAAGVKGGDVIMVKGSLGSRTGLIVDALTA 467 >gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2053A-b] gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2053A-b] Length = 455 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD+I +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYIANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia mucilaginosa ATCC 25296] gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia mucilaginosa ATCC 25296] Length = 539 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 123/479 (25%), Positives = 200/479 (41%), Gaps = 24/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L + +++A G +IG Q F + + DSR + F A G DGH FI Sbjct: 1 MIKL-SAAQIIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFI 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAI 113 A ++GA L +V +++ G + P V DV+ A+ LA R + + T+I I Sbjct: 60 PMAFERGATLALVEREVLDEQG-VPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTK++L + T A +GSYN+ +GVPLT+ R + + E+G H+G Sbjct: 119 TGSAGKTTTKDLLAAIFTPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVG 178 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I +L ++ P I + AH F G++ I K E+ EG++ TG++ LN DD Sbjct: 179 NIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDERVL 238 Query: 234 LLKAKSHALGIK-----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++S A + G+ + E Sbjct: 239 RMASRSVAPITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQ 298 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + + + A ++ R T+I+++YNA Sbjct: 299 LIGEHHVHNLLAAATVAYNSGISGEKIARALNKAAAASKWRMARTDRADGVTVINDAYNA 358 Query: 349 NPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 NP SM AA+ L+Q+ + R AVLG M E+G+ S H + ++ NIS Sbjct: 359 NPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLVVRMNIS 418 Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G +A + +T + +++ + GD+V+ KSSN Sbjct: 419 KLIAVGDETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGAKL 477 >gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14] Length = 453 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 123/472 (26%), Positives = 205/472 (43%), Gaps = 31/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I + N + DSR + + F +KG DGHDFI A + Sbjct: 3 LTLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G + + SL +P V+D L AL +LA ++ +IA+TGS GKTTTK Sbjct: 62 GCVVTLSE-------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 115 DMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P ++VIT AHL F EEIA K +I +G+E + + D +LL Sbjct: 175 PSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL------PS 228 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + ++ G + A N ++ + Sbjct: 229 HVDLIRFGEQADLQVT----SLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAMVASYVG 284 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + AL+ R ++ + YNANP +M+ + + I Sbjct: 285 KTLGVPDEAIKSALA---SLNLTRNRTEWKKAANGADILSDVYNANPTAMRLILETFTSI 341 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 342 PANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFP 401 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V++ + + L ++ SL D ++ K SNS +++ + + Sbjct: 402 IGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEAIEK 453 >gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] Length = 457 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 123/472 (26%), Positives = 205/472 (43%), Gaps = 31/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I + N + DSR + + F +KG DGHDFI A + Sbjct: 7 LTLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFEN 65 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G + + SL +P V+D L AL +LA ++ +IA+TGS GKTTTK Sbjct: 66 GCVVTLSE-------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 119 DMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAK 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P ++VIT AHL F EEIA K +I +G+E + + D +LL Sbjct: 179 PSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL------PS 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + ++ G + A N ++ + Sbjct: 233 HVDLIRFGEQADLQVT----SLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAMVASYVG 288 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + AL+ R ++ + YNANP +M+ + + I Sbjct: 289 KTLGVPDEAIKSALA---SLNLTRNRTEWKKAANGADILSDVYNANPTAMRLILETFTSI 345 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 346 PANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFP 405 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V++ + + L ++ SL D ++ K SNS +++ + + Sbjct: 406 IGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEAIEK 457 >gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] Length = 457 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 212/469 (45%), Gaps = 23/469 (4%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G I G +N +S D+R++ F A+ G +D HDF AV+ Sbjct: 5 SLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R + D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I+ + AK EIF+GL T +N + + + A Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAADDTAIVNLESNGGDFWND-VLADK 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S SK F ++ ++Q S+ V IG H N L + Sbjct: 239 SVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAALS 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 A +D L+ +GR + + + N LID+SYNA+ +M +++ Sbjct: 299 IQFGASLDEVKNGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +G+R +LG+M E+G+ S + H + E + + HV G + + + Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407 Query: 424 VHYSETMDGLFLFIQSSLV-DGDV---VVVKSSNSCGFYRLINLLLEEF 468 + T + I+ L V ++VK +NS G ++ L E F Sbjct: 408 GTHFTTHQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456 >gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51] gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 480 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 128/480 (26%), Positives = 201/480 (41%), Gaps = 33/480 (6%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++G G Q +G IDSR + E FFA+ G DGHD+I A QKGA +V+ + Sbjct: 2 VRGELTG-DSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKE 60 Query: 74 MVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + + +P + V+ L A+ LA A R A ++AITGS GKTTTK+M+ Sbjct: 61 RLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAV 120 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS + + + + NN +G+P+T+ P + + I E+GM LG+I FL + RP I VI Sbjct: 121 LSEKYRVHKNMENQNNELGLPMTILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVI 180 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL------- 242 T I H+ + IA AK E+ E L +TG+ LN +D + L + Sbjct: 181 TNIGTTHMELLGSQQAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQDSHQTFFYGLE 240 Query: 243 -----------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + G + + EV + H + Sbjct: 241 GRFHEPDLRGMNLTPFGILGTRFQVGHRQVGHGDRCAVPFAEVAAEVGQKTCPHVSLPLP 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+L L +S+ + + E R TLI + YNANP Sbjct: 301 GEHNVLDALAALSVGILLDVSLEEGCRGLAAMELSRMRLELHQGPEGSTLISDVYNANPT 360 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM + L + G +A+LG+M E+GE S+ H ++ + ++ IS + G Sbjct: 361 SM---KASLQVLKERGGASTLAILGEMYELGEASREGHYEVGQTVAELGISELITVGPLA 417 Query: 412 LALK-DALPRSI---HVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLL 464 + AL + + +H +G Q L G V++K+S + L Sbjct: 418 EEIACGALEKGLSPQRIHSFPDREGAIKKAQELLADLNQGTWVLIKASRGMKMEEVTRAL 477 >gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] Length = 463 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 211/476 (44%), Gaps = 21/476 (4%) Query: 5 WTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 D+ + G + + V I+ DSR + + F AIKG DGHD+I AV Sbjct: 1 MKLRDIKEGTNGKILSGSTLDLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAV 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA +V++ + S+ VDD + AL KLA R + A I ITGSVGKT+ Sbjct: 61 SRGAQALVLSR-TPSIQIPESVLALEVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTS 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTH 180 TKE+ LS T SYNN IG+PLTL + +V+ + E+ G +GEI +L Sbjct: 120 TKEVTASILSRKFVTLRSQKSYNNEIGLPLTLLGLTPEVEVAVLEMGGAYRMGEIEYLCS 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I V+ + AH+ +E IA K+E+ L G LN DD + + Sbjct: 180 IAKPFIGVVIVVGYAHIGRMGSLERIAENKSELVRSLPSEGFAILNRDDHRVKAMAD--- 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ ++ + + + +S +V +G H +L ++ Sbjct: 237 VTKAHVVWYGLDEESYIRATDVVSEGLNGIRFVLHIGDRSYQVKAPLLGRHSVHTILASV 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ + + A+ P T++D++YNANP SM AA+++L Sbjct: 297 AVAHVMGMEDQEIVHAIKELPPGLRLIVN----KGINGSTILDDTYNANPTSMLAALNLL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + I EG RIAVLGDM E+G ++ H+ + + ++ G + + Sbjct: 353 NDI----EGHRIAVLGDMAELGHFTEEGHLKVGARAAEV-CDKLYTVGELAQIIARGALQ 407 Query: 421 S----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 + V + ++ L +GDVV+VK+S +L+ L + +Q Sbjct: 408 AGMNPGDVVTLKDYQEAIDVLKRDLHEGDVVLVKASRIVSLDKLVAALTVQNEVVQ 463 >gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase [Herbaspirillum seropedicae SmR1] gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 198/477 (41%), Gaps = 27/477 (5%) Query: 3 PLWTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L T A + G +N + DSR++ P F A++G +D HDF+ Sbjct: 12 WLRTAEAAASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAV 71 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA VVV L++P V D AL ++A R++ + +I +TGS GKT Sbjct: 72 ADQGAAAVVVER----VPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKT 127 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ L++ G++NN IGVPLTL R+ + E+GM+H GEI Sbjct: 128 TVKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAV 187 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ + P + ++ H + +E +A + L G DD F L + Sbjct: 188 LSRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDDFTPLWRE 247 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMA 293 + G + + SFG S AD + +V +G H Sbjct: 248 E---AGARRVLSFGLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNV 304 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L ++ ++ L F P GR +R +ID++YNANP S+ Sbjct: 305 RNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEARSG---ALVIDDTYNANPDSV 361 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AAI VL+ I+ G R+ VLGDM E+G+ FH ++ I + G Sbjct: 362 RAAIDVLAAIA----GPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKH 417 Query: 414 LKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + + + + L ++ + G V+VK S R++ L+ Sbjct: 418 AVTAYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVN 474 >gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2 ,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 473 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 129/476 (27%), Positives = 200/476 (42%), Gaps = 23/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G S I P V G + IDSR +AP F A G DGHD+ Sbjct: 1 MITL-SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + + +P V+DV+GAL LA A R T++ +TGS G Sbjct: 60 -------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+P+T + + + E+G +G IR+L Sbjct: 113 KTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAETEHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L P I ++ + AHL F E IA AK E+ E L + G LN DD + ++ Sbjct: 173 ADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ AD + K + ++ V + Sbjct: 233 TRARVLL----FGEAPEADVRGEKVRMTADGRPAFELHTPTGCSDVTMRLY-GEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 288 LAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALR 347 Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L+ Q GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G ++ LLE Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463 >gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 457 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ QA+ + + + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAVVTLSEKEVA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADSIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG + ++ + + + G + A N ++ + Sbjct: 230 DKKVVRFGPGAELEIT----DLVERKNSLTFKANFLEQALDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVDTVIFYGEDIAELSQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVFYFKKTADEDQFEDLVKKVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] Length = 449 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 154/463 (33%), Positives = 242/463 (52%), Gaps = 16/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ N + ++S+ + + F A+KG DGHD+ L A Sbjct: 1 MI--WNSKTLSFALGITI---SNSINCNEVQLNSKDVKKGDLFIALKGNR-DGHDYALDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ + + + VDD AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAAAVIVSKQVEITDKD---KILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L I L +A G++NN++G+ + LA M D+++ I ELGM+H GEIR L Sbjct: 112 STKEALKILLQHDSLVFAGRGNFNNYLGLLINLASMADDMEYAILELGMNHKGEIRELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IAVIT I+ AHL F+ +EEIA AK EIFE K +N D + + + + Sbjct: 172 ILKPNIAVITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADTNCYSKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I +Y+FG N QL ++ Q ++ ++ KS+E+ I H A+N + L Sbjct: 232 NLYIDRVYNFGILHNTHAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL D++ A L+ +P +GRG +N +I + YNA+P SM+AA+ L Sbjct: 292 LIIDILGKDIEIAANHLANIYPTKGRGD----IINIQNARVICDYYNASPKSMQAALEYL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + A++GDM E+G+ S+ H +L + S ++L G + + D LP Sbjct: 348 KQVMAENK---TAIIGDMLELGKNSKLLHEELVPYILDVGCSKIYLVGVNTKYIYDLLPS 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I Y + +D L I D++++K S ++++ Sbjct: 405 KIAKKYFKNVDELITHITDLFKGNDLILIKGSRGLKLDKIVDY 447 >gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 458 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 121/471 (25%), Positives = 190/471 (40%), Gaps = 23/471 (4%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 I G I + DSRS+ P + F A++G +D HDFI V +GA Sbjct: 2 QQAAGWIAGARICGDGAVPFARVHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAA 61 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V+V+ ++ A+ +P D AL +L R + +A+TGS GKTT KEM+ Sbjct: 62 VLVSREVDAA-----VPAIVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIA 116 Query: 128 IALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ G+ NN IG+PLT+ R+ + ELGM+H GE +L + +P Sbjct: 117 AIFAAAVGEDQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AVIT H +E +A A L G D A Sbjct: 177 TVAVITNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAAG 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + M+V+ G + EV +G H +N L + Sbjct: 237 TRRVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACAL 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 V L+ F P +GR + +ID++YNANP SM+AAI VL+ + Sbjct: 297 AAGVHVPAIQAGLAEFKPVKGR---LQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFA 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 R+ VLGDM E+G+ +FH ++ I +W +G + A + Sbjct: 354 A----PRVLVLGDMGEVGDQGPAFHDEIGAYAQARGIEVLWATGELAVHAVQAFGANGR- 408 Query: 425 HYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L ++ G V+VK S R++ L+ + A Sbjct: 409 -HFGSAEDLAKALEEDSGGMVAQAG-AVLVKGSRFMRMERMVAALVADTSA 457 >gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP23-BS72] gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP23-BS72] Length = 457 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + + D + L+ Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLMPADPIVEDYLQ------T 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex degensii KC4] gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex degensii KC4] Length = 464 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 201/470 (42%), Gaps = 17/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59 M PL L + ++ I P V + D+R I FFA+KG ++GH F+ Sbjct: 1 MIPL-EAGRLAEIMEARLIRGSPDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A KGA VV+ + + V DVL AL +LA R + +I +TGS GK Sbjct: 60 AGAKGALGAVVSR-LPEQPLPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGSTGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L+ + A G+ NN IGVPLTL + + +F + E+ M GEI L+ Sbjct: 119 TTTKDLLAAVLAVRHRVLATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALS 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P+ AVIT I AHL + IA AK EI + + G L + F E + Sbjct: 179 ALAEPNAAVITNIGEAHLERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRC 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I S + V+ E GYH A N Sbjct: 239 RGKVIYFGESDKAQVRLLSY---TSLGEKGCVFRVRTATGEEEYQLPLPGYHNALNCTAV 295 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + + + FT+I+++YNANPASM A+ V Sbjct: 296 IAIARQLGFSPEEVQEGFRRVQ----TSGMRLEIEHWRGFTVINDAYNANPASMAGALEV 351 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+++ R++AVLGDM E+GE + + H ++ E + + + G L Sbjct: 352 LAEL--GKGRRKVAVLGDMLELGERTVAAHREVGEKAAAV-ADLLVVVGERARDLAAGAL 408 Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V T++ + + L +V++VK+S + G R++ L Sbjct: 409 SAGMPPDRVLAVATVEEAIRQLMNELEGDEVLLVKASRAMGLERVVQALR 458 >gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae 670-6B] gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae 670-6B] Length = 457 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 127/475 (26%), Positives = 199/475 (41%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L + Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPTDKKVVR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 G + + ++ + G + A N ++ + Sbjct: 236 FGQGAELGI----------TDLVERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase [Streptococcus pneumoniae R6] gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae D39] gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase [Streptococcus pneumoniae R6] gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae D39] Length = 457 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PI 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudoalteromonas atlantica T6c] gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 471 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 143/474 (30%), Positives = 216/474 (45%), Gaps = 26/474 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ + + Q +QG I I + G+S D+R I + F A+ GP++DGH F Sbjct: 1 MIPV-SLAWIAQQVQGEIIRSENSIAEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I A GA VVV+ + + V D AL L A + +AITGS Sbjct: 60 IEQAQTSGAIAVVVSRQV-----ETPLAQILVSDTKAALGLLGQAVKREVAPKTVAITGS 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM+ LS K A G++NN IGVPLTL R+ +F + ELG +HLGEI Sbjct: 115 SGKTTVKEMVAAILSRRGKVLATKGNFNNDIGVPLTLLRLEAQHEFAVVELGANHLGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P +A I A AHL F + +A AK+EIF+GL K G N D F+ Sbjct: 175 YTTELVKPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWH 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295 K L + + G+ AD+ + + + + G H N Sbjct: 235 GKYEHLRNQRFSTQGE---ADYYAQDVVLGLSGCADFLMVTPIGKVSITLPLPGIHNVSN 291 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L++ + + A++ L GR + + + ++D++YNAN AS+ A Sbjct: 292 ALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVK---VLDDTYNANVASVNA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI +L + GR+I VLGDM E+GE ++ +H + E I ++ G + Sbjct: 349 AIDLLGSFA----GRKILVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSAS 404 Query: 416 DALPRSIHVHYSETMDGLF--LFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLE 466 D +S ++ D L L + D+ ++VK S S ++ L Sbjct: 405 DVYQKS--GYHFSDKDKLVAALAEHLAAEKRDISILVKGSRSARMELVVEALEA 456 >gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium phytofermentans ISDg] gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium phytofermentans ISDg] Length = 507 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 121/505 (23%), Positives = 202/505 (40%), Gaps = 51/505 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++ G I + IS +S+ F I G D HDFI A ++G Sbjct: 6 VNEIATITGGTIIKGNNDRTIFKISTNSKVGDSDTLFVPIVGERVDAHDFIADAYRQGIR 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + + D +A G+ + V+ + AL +L R S II ITGSVGKTTTKEM+ Sbjct: 66 VTLTSKDEIAE-GTEDMVYIKVNHTVEALQRLGEYHRDHSNVPIIGITGSVGKTTTKEMI 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 A S+ IG+ N+ +G+P + + + GI E+GMS GE+ + + +P + Sbjct: 125 AAAFSTRSNVLKTIGNMNSQVGLPQMMLMLEDTHEVGIIEMGMSEFGEMERIAKVAKPKM 184 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV+T I +H+ E I K I + + LN DD + + Sbjct: 185 AVVTNIGVSHIGQLKTQENIRKEKLNIVNYFTEDSILLLNGDDQLLLEIYDEYRKDNSSV 244 Query: 247 I------------------------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 Y+FG + + K E + + + E Sbjct: 245 KEKTQNNGSVDLSEMTRRSLNKASVYTFGTNPDCTIYADNIKTDGESTTFTFHYKNGTKE 304 Query: 283 -----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + +G H N L + L D A + L + P RG+ + Sbjct: 305 ELVDDITLSVLGKHNILNALAAIFFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKVNG--- 361 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+ID++YNA+P SMK AI V+ + + V D+ E+G++S+ H ++ E L+ Sbjct: 362 -ITIIDDTYNASPDSMKGAIHVIMDMPKEHKK--FIVFADILELGDISKKCHYEVGEYLA 418 Query: 398 LYN------------ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLV 442 I V G + D + + I+ + F +I+++L Sbjct: 419 KQCKIEKACGKESTFIDEVITIGEEAKYILDGVRENGEDINTKSFMEREEAFKYIKTNLT 478 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 DV+++K S ++ L EE Sbjct: 479 KRDVILLKGSRGMKLDLIVERLKEE 503 >gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter gallaeciensis BS107] gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 470 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 170/448 (37%), Positives = 239/448 (53%), Gaps = 10/448 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+GISID+RSIA + F A+K DGHDF+ A++KGAG +V+ Sbjct: 20 DWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR--RPEGVGDDA 76 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ VDDV AL L A R R+ A +IA+TGSVGKT+TKEML LS +T+A + SY Sbjct: 77 PLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASY 136 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNH GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+AP HL F GI Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGI 196 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA+ KA I +GLE G LN D + + + G Sbjct: 197 EGIAAEKAAIIDGLEPGGVAVLNADIAEAPILQSVAERVTHDVQWFGTGTGPIAPTYHLT 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + E + ++ + +G H A N L L ++ L D+ A+++LS++ Sbjct: 257 ATTLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLW 316 Query: 321 HPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P GRG R + QG L+D+SYNANP S+ AA++VL+ GRRIA LGDM Sbjct: 317 SPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGDM 374 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G Q H DLA++ ++ + + G + AL ALP + T D + + Sbjct: 375 KELGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPAEKRGGHYATSDDVRADLA 434 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GDVV+ K S S ++++ + E Sbjct: 435 GQIAAGDVVLAKGSLSMALAKVVDGIRE 462 >gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus mitis SK597] gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus mitis SK597] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKELA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+I KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTIYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F +IA K +I +G+ + D L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSDIAKGKMQIADGMSSNSLLLAPADPIVESYL------PA 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQDLELTRNRTEWKKAANGAD---VLSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS I V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVIDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae TIGR4] gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae TIGR4] gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae TIGR4] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G ++ L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA17545] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 198/475 (41%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + + L + Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPAAPIVEDYLPTDKKVVR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 G + + ++ + G + A N ++ + Sbjct: 236 FGQGAELGI----------TDLVERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA47368] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 200/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLFLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457 >gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae OXC141] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLVPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457 >gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2846] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] Length = 433 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 134/462 (29%), Positives = 212/462 (45%), Gaps = 29/462 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL + ++G + I V +IDSRS F +KG + DGH +I A++K Sbjct: 1 MRLTDLAKVVEGKILNIEEDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYIEDALKKW 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 + + + G V D AL K+A+ R T++ ITGS GKT+TKE Sbjct: 60 SVGYLTEKPLNFKNG------ILVKDTYQALKKIAIYKRKSID-TVVGITGSSGKTSTKE 112 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L LS+ KTYA G+YNN IGVPLTLA P + I E+G +G+I +L ++V P Sbjct: 113 LLNFVLSNFYKTYATSGNYNNEIGVPLTLANTPENTHIAIIEMGAGKVGDIDYLNNIVNP 172 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I V+ ++ AH+ F E I K EI F + + Sbjct: 173 DIGVLVSVGHAHVEKFGSFENIIKGKGEI----------FNTSHYHVLPFDLLNYYKDKL 222 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 K +FG+ + ++ K E + +V + + +++ + +N+ G++ Sbjct: 223 KKFITFGEEG--NIKVYDIKIIPEGTTGKVAYKNQVLDLTIPIFNKGIFKNIGAVAGVLY 280 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D ++K L F+ +GRGK + G T+ID+SYNANP S+K AI L++I Sbjct: 281 HLGLDPIESLKVLKEFNQIQGRGK----IIKIGNLTIIDDSYNANPLSVKNAIETLNEIP 336 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + VLGDM E+GE S+ H +A+ + +I +V+L G +K L +V Sbjct: 337 TVK----VLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFLYGEETKYIKQELEGKKYV 392 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++ V+VK S +I L Sbjct: 393 LH-TDKKEIANQLKKLENSSPTVLVKGSRGMKMEEVIEYLKN 433 >gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 453 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 125/467 (26%), Positives = 200/467 (42%), Gaps = 28/467 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + + + GI+ D+R++ E F A++G ++DGH F+ A++ GA Sbjct: 6 TPAQLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV+ + L +P+ V+D L A +A R + +IA+TGSVGKTTTKE+ Sbjct: 66 IAAVVDRSWESE--GLDLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKEL 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ +YNN IGVP TL + + + E+GM GEI FLT + RP Sbjct: 124 IAAVLTTKGNVLKTQLNYNNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPT 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT + AH+ E IA AK E+ + LN D++ AK Sbjct: 184 IAVITNVGTAHIGRLGSREAIAQAKCELLAEMPNDSIAILNSDNALLMATAAKVWQGETL 243 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + + + S+ + G H A N L L + + Sbjct: 244 ------------AYGLEKGNLCPELIDDRTISIDSINLPLPLPGRHNAVNYLAALAVAKV 291 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + LSV P + ++DE+YNA SM I+ L ++ Sbjct: 292 LGVSWEPLKGGLSVDLPSGRA----KRYELANDIVILDETYNAGLESM---IAALKLLAD 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALP---- 419 R IAVLG M E+GE S FH + E N+ +++ A+ Sbjct: 345 TPGKRHIAVLGTMKELGERSLEFHRQVGEKARELNLDALFILADFEEASAIATGAAGLPF 404 Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + + +Q + GD ++ K+S+S R++ LL+ Sbjct: 405 VELGDITQVDAREMMAKRLQEFVKAGDRILFKASHSVELNRVVQLLV 451 >gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 453 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 128/443 (28%), Positives = 195/443 (44%), Gaps = 16/443 (3%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 ++ + DSR + P F G DGH F A Q GA ++ N + Sbjct: 16 AEPVSIHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVPADR 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 ++ V D A+ ++A R+ II +TGSVGKTTTKE LS+ T G Sbjct: 76 TV---VVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFGNTLKTEG 132 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IGVP TL R+ ++ + E+GM H GEI LT VRP +IT I +HL N Sbjct: 133 NQNNEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLENLG 192 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E I AK EI GL + LN D+ L + G FG + AD + Sbjct: 193 TRENILKAKMEICAGLPDGAPLVLNADND----LLPTAQVPGRLRAVWFGIEQEADVRAE 248 Query: 262 KWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + ++ + V + V G H + L + L D KALS + Sbjct: 249 NIQTGAQGTTFTLVDREYGRFPVSIPTAGLHTVYDALSAYAAATRLGLDPANCAKALSRY 308 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 + + +G T+I++ YNA+P SMKAAISVL + + IA+LGDM E Sbjct: 309 Q----TTGMRQHIVERGGVTVIEDCYNASPDSMKAAISVLKALPNKRK---IALLGDMLE 361 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439 +G+ S+ H E ++ + + G + +A R + + + + +Q Sbjct: 362 LGDASEEGHRHTGEWVAEAGVDTLIAYGPRSAVMAEAAQARGVTTVHCQKAQEVLQCLQQ 421 Query: 440 SLVDGDVVVVKSSNSCGFYRLIN 462 + GD ++ K+S++ L+ Sbjct: 422 FVQPGDALLAKASHAMKLEDLLQ 444 >gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] Length = 450 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 205/469 (43%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L ++ QG + ++ID+R + F A+KG +DGHDF Sbjct: 1 MSELLNAEFIVSDKQG------DNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAED- 53 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ + +P V D AL + A R + A ++A+TGS GKT Sbjct: 54 ----AVAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTGSSGKT 109 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L G++NN IGVPLTL R+ + DF + ELG +H+GEI + T Sbjct: 110 SVKEMTAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEYDFAVIELGANHVGEIAYTTD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 170 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +++ DF + + + + ++ + G H N L Sbjct: 230 NKRVWRFG-LQAAEDIDFYATDVQITPQATHFTLHSPFGTVTIELPLPGRHNIANALAAA 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + AD+ + L GR + A L+D++YNAN SM AA VL Sbjct: 289 ALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLATG---KLLLDDTYNANVGSMTAAAQVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+GE + H + E I V G L DA Sbjct: 346 AEMP----GYRVMVVGDMGELGETAIDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDA--- 398 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467 S + + + L + L + V V++K S S ++ L E+ Sbjct: 399 SGNGEHFQDKSALAARVSELLSEHPVITVLIKGSRSAAMEHVVRALQEK 447 >gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 472 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 194/458 (42%), Gaps = 15/458 (3%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G GIV + IDSR++ F A++G H DGH +I KGA +V Sbjct: 21 NGDVRGIVTDPV---VVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAW 77 Query: 75 VASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 S G+ + P V+D + L +LA R +IA+ GS GKTTTKEM+ L Sbjct: 78 YESEGAPAAPEGCGFLVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAVL 137 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + G+ NNH+GVPLTL ++ + E+G++H GE+ L L RP ++T Sbjct: 138 GTGFTVQTSKGNLNNHLGVPLTLLQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 I HL +E +A+ + +F L++ G + L K A G+ +++ Sbjct: 198 NIGHEHLEFLLNLEGVAAEETRLFRYLQQHGGTCFV----NADDLWLKEAAEGLTGSFTY 253 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G + ++ + ++S + + N++ L ++ T Sbjct: 254 GTADDSQIACQARHIAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAAVGTYFG 313 Query: 311 DTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + R + G LI+++YNAN SM+ AI L I G Sbjct: 314 LSLEQIKKGLEALRPSPGWKRLEVQDAGGVVLINDTYNANSDSMRLAIDALVDIP--CSG 371 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 ++IAVLGDM E+GE H + I ++ G H H HY E Sbjct: 372 KKIAVLGDMLELGEAGIVEHEKTGRYIQQSPIDLLFTYGRHARLYGIEAGARCHGHY-EN 430 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L ++ + GD V+ K+S S ++ L++E Sbjct: 431 RQKLLDELKMVVQPGDAVLFKASRSMRLELVVEALIKE 468 >gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] Length = 457 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLVGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74] gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74] Length = 457 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIKTAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457 >gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] Length = 480 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 141/499 (28%), Positives = 210/499 (42%), Gaps = 50/499 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L + + G IG V +S DSR + FFA+KG +D HD+++ A Sbjct: 1 MISLQT-KKLAEILNGRLIG-DETVTVETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G VVV +++P V D AL LA + +AITGS GKT Sbjct: 59 VEQGNTAVVVEHAC-----EVNVPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSGKT 113 Query: 121 TTKEMLTIALSS------------------------IKKTYACIGSYNNHIGVPLTLARM 156 T KEM L G++NN IGVPLTL R+ Sbjct: 114 TVKEMTASILQQTARKSAVKNTEVFFTGSNHGKANFADAVLFTQGNFNNDIGVPLTLLRL 173 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + F + ELG +H GEI + T LVRP +A+I +A AHL F ++ +A AK EI+ G Sbjct: 174 QPEHRFAVIELGANHAGEIDYTTKLVRPDVALINNVAAAHLEGFGSLDGVARAKGEIYRG 233 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L + G +N D + L + G + + AD+ + S + Sbjct: 234 LSEDGIAVVNSDCHYLSLWDKEI--AGHRMQSFSATNPEADYWAENIRMTESGSAFTLHS 291 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 S+++ +G H N L + + A++ L P +GR Sbjct: 292 PDGSIDISLPYLGAHNIDNALAATALAMNVGAELCDVKAGLEQRSPVKGRLFPIEP---C 348 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 L+D++YNAN S+K+AI VL + E RI +GDM E+GE S+ H +A Sbjct: 349 NNLLLLDDTYNANVDSLKSAIGVLK----NYEAFRILAVGDMAELGENSRECHRQVANYA 404 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETM----DGLFLFIQSSLVDGD-VVVV-K 450 N+ V G + A + + + L I L + VV++ K Sbjct: 405 KSANLDCVACFGAETAVIAQA----CNGTHFTDKTVMANYLAAVIDEKLKNNQRVVLLAK 460 Query: 451 SSNSCGFYRLINLLLEEFP 469 S S +I +L +F Sbjct: 461 GSRSQKMEDVIAILKRKFE 479 >gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] Length = 457 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR IA + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAVVTLSEKEIA------NHPYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTKYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVENYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDKDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVECLENEDK 457 >gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] Length = 457 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] Length = 473 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 201/476 (42%), Gaps = 23/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + I P+ V G + DSR++ F A G DGHD+ Sbjct: 1 MIAL-SLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 G V V + L +P VDDV AL LA R T+IA+TGS G Sbjct: 60 -------GAVGAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ LS T G+ NN IG+PLT R+ D + E+G +G IR+L Sbjct: 113 KTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTRDTRHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L ++G LN DD + + Sbjct: 173 TSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ +A+ + L+ + Y Sbjct: 233 TRARVLL----FGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEVTLRLYGEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + AL + + R T+++++YNA+P S++AA+ Sbjct: 288 LAAAAVAHELGMPAEEIALGLNEARSLSRWRMEVTERPDGVTIVNDAYNASPDSVRAALR 347 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L + + GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWL 407 Query: 415 KDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++ L GDVV+VK+S + G ++ LLE Sbjct: 408 RMGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLVKASRAAGLEKVAQALLE 463 >gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC 13032] gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC 13032] Length = 514 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 128/499 (25%), Positives = 203/499 (40%), Gaps = 45/499 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T ++ + G G V+ + DSRS+ P F A+ G DGHDF Sbjct: 1 MITM-TLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL---------------------GALNK 97 A++KGA V+ + + +P V V AL++ Sbjct: 60 TAIEKGAVAVLAARE-------VDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSR 112 Query: 98 LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 LA + ++AITGS GKT+TK+ + L T A GS+NN +G+P T Sbjct: 113 LARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATVLDQDGPTVAPPGSFNNELGLPHTA 172 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R D + + E+ +G I+ LT + P IA + + AHL F E IA AK EI Sbjct: 173 LRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEI 232 Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQ 269 + G LN DD F + ++ A + G++K +D+ + Sbjct: 233 IEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYWATSISLDAVAR 292 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + + S V G H N L I + + L Sbjct: 293 ASFTLNTKDGSWPVTLQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMD 352 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSF 388 + + T+I++SYNANP SM+A I+ L+ + E AVLG M E+G+ + Sbjct: 353 VKTRADGV--TIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDASEA 410 Query: 389 HIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H +L L+ YN+ + G + + A + H +D + + D Sbjct: 411 HAELGAELAKYNVQELVAVGENPNCAALAESAASLGVSTHVVSDVDAALELLAGHIKRDD 470 Query: 446 VVVVKSSNSCGFYRLINLL 464 VV+VK+SN+ +R+ L Sbjct: 471 VVLVKASNADRLWRVAEAL 489 >gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus curdlanolyticus YK9] gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus curdlanolyticus YK9] Length = 465 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 117/469 (24%), Positives = 199/469 (42%), Gaps = 21/469 (4%) Query: 14 IQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 G Q ++GI+ DSR++ P + + + G ++DGH+F ++ GA + Sbjct: 2 CGGTLANEQRDSQIAISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWE 61 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 P+ V D L AL +LA A R I+ ITGS GKTTTK++ L Sbjct: 62 EGCPVPDELAEAPLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAVLG 121 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 +I + + G+ NNHIGVPLT+ ++ ++ + E+GMS GEI L+ + P A+IT Sbjct: 122 TIYRVHKTAGNLNNHIGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITN 181 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + AH+ IA AK EI GL G + N D+ A+ + FG Sbjct: 182 VGDAHMLQLGSRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFG 241 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSME-------VVHHGIGYHMAQNMLMTLGIVS 304 + + + + S+ S +V S E + G H N L + + Sbjct: 242 AAADCQWSASNVQIGSDASAFDVVSPLLSAEEAEQLRGITLPVPGAHNVMNALAAIAVAY 301 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L+ G R + +++++YNANP +++AA+ ++++++ Sbjct: 302 RFGVPAAQIRDGLAT---VTMTGMRIQPVDAFNGAKILNDAYNANPTAVRAAVDLVAELT 358 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------A 417 + VL DM E+G H + ++ V G + D A Sbjct: 359 GYRRKW--VVLADMLELGPEEADLHRGIGAYVTPEKADAVLTWGPLAQYIADGAAVAFEA 416 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 R+ V + E + L +++ L D+V+VK S +++ L Sbjct: 417 AGRADDVRHFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVVQALEN 465 >gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus S110] gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus S110] Length = 471 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 207/466 (44%), Gaps = 11/466 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T Q I G + + + D+R++A + F A+KG +D ++F+ A + Sbjct: 2 MFTLAQAQQWIPGARLVGDGATAIARVHTDTRTLAEGDLFVALKGERFDANEFLADAKAR 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + + + V D L AL L R + +IA+TGS GKTT Sbjct: 62 GAVAAIAH----GGLEAAGLAGLEVPDSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVT 117 Query: 124 EMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 +M+ L + + A G++NN IGVPLTL R+ + ELGM+H GEI L + Sbjct: 118 QMIAAVLVAFRGDRALATAGNFNNEIGVPLTLLRLRAKHQHAVVELGMNHPGEIARLAAI 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP +A++ HL + +E +A +F + + GT + D F L +H Sbjct: 178 ARPTVALVNNAQREHLEFMATVEAVALENGAVFSFVPEDGTAVFPHGDEFAPLWNDMAHD 237 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG+ ++AD L + + ++ + H G H N L Sbjct: 238 GATRRCMTFGEHEDADISLVAAEWQQGAWQVRIRTPLGDFDAQLHIAGRHNVVNALAATA 297 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAAISVL 360 +T + LS F P +GR K L G TL+D+SYNANP S++AAI VL Sbjct: 298 CALATGIPPETIARGLSAFEPVKGRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVL 357 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R+ VLGDM E+G + FH ++ + I V+ G A Sbjct: 358 AALP----GPRLLVLGDMGEVGNRAPEFHAEVGDWARQRGIEAVYALGAETAHSIAAFDG 413 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++ L + + L V+VK S R++ + + Sbjct: 414 GDNGRHFADIEALGAAVLARLPQVGSVLVKGSRFMKMERVVQAIEQ 459 >gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 436 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 129/461 (27%), Positives = 213/461 (46%), Gaps = 29/461 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + + G + +V +N IDSR + + F +KG + DGH +I A++KG Sbjct: 1 MDLVQLKKIVNGEFLNLVKNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + G V D AL ++ R + + +I ITG+ GKT+TKE Sbjct: 61 AVGYFSEKPLNFKNG------ILVKDTYQALVEVGKHKRNQVRV-VIGITGTSGKTSTKE 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS++ TYA G+YNN IGVPLTLA +P DF I E+G +G+I +L +V Sbjct: 114 LMNFVLSNLASTYATQGNYNNEIGVPLTLANIPESTDFAIIEMGAGKVGDIDYLGKIVNQ 173 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I+V+ ++ H+ F E + K EI F + S K + Sbjct: 174 DISVLVSVGHGHVEKFGSFENVIKGKGEI----------FNCGNYSVLPSELKKFYNPK- 222 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++G+ + D +++ K + + ++ + +E+ + +N+ G++ Sbjct: 223 -NPITYGE--DGDIEIKDIKIVKDGTVGIIKYKNDKIELKIPVYNIGVFKNIGAVAGVLY 279 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D ++ L F RG + G FT+ID+SYNANP S+K AI +L+ + Sbjct: 280 HLGYDPIKNLEVLKDFKSSSQRG----EIIKIGNFTIIDDSYNANPLSVKNAIEILNSM- 334 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 EG +I VLGDM E+GE SQ H ++ ++L+ I ++ L G + + + V Sbjct: 335 ---EGFKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYGNETKYVFEEIDDKSRV 391 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D + I VV+VK S +I L Sbjct: 392 KHFDNKDDIAEDILKFSDFQPVVLVKGSRGMKMEDVILKLR 432 >gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] Length = 473 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 129/476 (27%), Positives = 198/476 (41%), Gaps = 23/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G S I P V G + IDSR +AP F A G DGHD+ Sbjct: 1 MITL-SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + + +P V+DV+GAL LA A R T++ +TGS G Sbjct: 60 -------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+P+T + + E+G +G IR+L Sbjct: 113 KTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAATEHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L P I ++ + AHL F E IA AK E+ E L + G LN DD + ++ Sbjct: 173 ADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ AD + K + + V + Sbjct: 233 TRARVLL----FGEAPEADVRGEKVRMTPDGRPAFELHTPTGCSDVTMRLY-GEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 288 LAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALR 347 Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L+ Q GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G ++ LLE Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463 >gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] Length = 457 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] Length = 461 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 201/479 (41%), Gaps = 38/479 (7%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL----- 58 T ++ +A+ G + +SIDSR I P + F + G H DGH FI Sbjct: 1 MTLREISEAVGGKLPAAGDLDKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEK 60 Query: 59 ------HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 A K + V V+D AL L+ R + + ++A Sbjct: 61 GAAGCFAAFSK------------NVTHPEGMTVISVEDPEQALQDLSAFYRRKFQLPVVA 108 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TGSVGKTTTK+M+ ALS KT G+ NNH+GVPL L R+ + + E+GMS Sbjct: 109 VTGSVGKTTTKDMIAAALSPELKTLKTEGNLNNHLGVPLMLTRLDSTYEAAVLEMGMSGY 168 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L L P +AVIT I +HL E IA AK E+ L G +N D+ Sbjct: 169 GEIDLLAKLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHLAADGVAVVNADEP-- 226 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYH 291 L + +FG ++A + ++ +G + V G H Sbjct: 227 --LLVPHIKGLGCRVITFGFDEHATVRCTDIINDEAGKRAIIEQEGFAPLEVVPPLPGRH 284 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N++ L + +L D + S G R +I+++YNA+P Sbjct: 285 NIYNLMAALAVGRLLGVDDSVLTEGFSR---VRLSGMRLETVTTPAGIQVINDAYNASPT 341 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 ++ AA VL++++ AVLGDM E+G+ + H ++ +N+S + + G Sbjct: 342 AVSAAFDVLAELAKDAAR--FAVLGDMLELGDWEEEGHRQTGRQVARHNLSGLLVLGERA 399 Query: 412 LALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + D + V+ E+ I GD V++K S ++ +LLE Sbjct: 400 QLIADGAVAAGYPPQRVYRCESHAQAAQVIAKIARAGDWVLLKGSRGMRMEDVLAVLLE 458 >gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS455] gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS455] Length = 456 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + + P VDDVL A +LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKRVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + KA R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHKAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69] gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69] Length = 457 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLVSQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457 >gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] Length = 454 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 203/472 (43%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + G +G + +S D+R+I F A+ G +D HDF A Sbjct: 1 MITV-TLSQIADITGGELVGN--DLSIESVSTDTRAIEQGALFVALVGERFDAHDFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GAG ++V ++++P V D AL ++A + +AITGS GKT Sbjct: 58 VESGAGALLVQK-----TLNVNVPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHVGEIEYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL G +N D + Sbjct: 173 LVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGEAKWDQVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + +ADF + + + + +G N+ + Sbjct: 233 DKKVIT--FSQNNTDADFYASNIVLNAAGEASFDLHIAATSQEIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + + R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALQFGATLEEVRTGLKHLNKVKGRVEVEELSDNIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S +G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 SAF----QGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ET + +I+ L + ++VK +N + + L E + Sbjct: 404 -CDGIHFETHQEMIDYIKQHLDQAGPEHHTMLVKGANGARMFEVAAALKEYY 454 >gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Zunongwangia profunda SM-A87] gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Zunongwangia profunda SM-A87] Length = 430 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 119/437 (27%), Positives = 197/437 (45%), Gaps = 20/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+S D+R+I P FFA+KG +++G++F A+ KGA + +V+ + A Sbjct: 14 SGVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDN---YIF 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L AL +LA R ++AITGS GKTTTKE++ L+ KT + G+ NNHI Sbjct: 71 VEDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL RM + G+ E+G +H GEI FLT + P IT AHL F GIE + Sbjct: 131 GVPLTLLRMDETTEVGVVEMGANHQGEIEFLTEIALPDYGYITNFGKAHLEGFGGIEGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ L+ + D + +++FG S+ A + + Sbjct: 191 KGKSELYTHLKNHKKLLFLNLDDEIQ-----QRQDSYSHVFTFGSSEKAAVSIDYTISQN 245 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + G L I +A+ + P R Sbjct: 246 GPEYASFTYNNDVFNTQLTGQYNAYNAAAA--LTIGLYFKVPFKAIKEAIKEYSPSNNRS 303 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N TL+ ++YNANP SM ++I S + + + ++GDM E+G+ S+ Sbjct: 304 QIQKTKNN----TLLLDAYNANPTSMGSSIINFSNL--NTPLSKTLIIGDMLELGQYSKE 357 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E+ + + +V+L G H + L F+ ++ ++ + Sbjct: 358 EHQSIVELCNSKGLKNVYLVGKHFKET----STPEEYQKFDNTTELKTFLTANPINNSYI 413 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S ++I L Sbjct: 414 LIKGSRGIALEKIIENL 430 >gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 146/497 (29%), Positives = 213/497 (42%), Gaps = 35/497 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ QA+QG + DSR I F AI G DGHD++ Sbjct: 1 MMPM-SLEEIAQAVQGRLVAGTAAANTPVATSAFTDSRQIVEGSVFIAIAGERVDGHDYV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIA 112 H +GA +V+ + I +P V+D + AL LA R + T++ Sbjct: 60 PHVGAQGAVAAIVDHE----IADADVPQIVVEDTVLALGLLAKHNIERRRALGTPFTVVG 115 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+++ LS + T A +GS+NN IG+PLT ++ + F + E+G +H+ Sbjct: 116 ITGSVGKTTTKDLMKALLSHMGSTVAPVGSFNNEIGLPLTSLKVNAETRFLVAEMGANHV 175 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIHGLVPGGLSVLNANDEHV 235 Query: 233 ELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + A + + G + Q + + S+ G+ EV G Sbjct: 236 AAMSAFAPGDVMWFGLPNGDGGNPAITAQHVRCDELDHPSFTLKNGDGEHAEVTLGICGQ 295 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNAN 349 H N L + L +D ALS Q FTLID+S+NAN Sbjct: 296 HNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTVNKQETSFTLIDDSFNAN 355 Query: 350 PASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P SMKA + L + E + AVLG M E+G + H+ + + + Sbjct: 356 PDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHVGIGRYALEGGVDALLTV 415 Query: 408 GFHVLALKDALP-----------RSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNS 454 G A DAL + HV + +D + G VV++K S++ Sbjct: 416 GSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTRLAVEHPGAVVLLKGSHA 475 Query: 455 CGFYRLINLLLEEFPAI 471 G L E + A+ Sbjct: 476 SGLS----ALAERWQAL 488 >gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 456 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 205/476 (43%), Gaps = 33/476 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q + G Q V I+ D+R FFA+KG H+D H ++ A Sbjct: 1 MIKLTT-QQLAQILNADLTG-DEQAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA +VV ++ P V D AL +LA R + +A+TGS GKT Sbjct: 59 VEQGAAALVVQQANTE----IATPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G++NN IGVPLTL R+ F + ELG +H GEI Sbjct: 115 TVKEMTASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEID 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + THL +P A++ +A AHL F IE +A AK EI+ GL + G +N + ++ EL + Sbjct: 175 YTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTQNGVAIINSEHNYIELWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + I+ D++ K S + S+E+ +G H +N Sbjct: 235 KEIGSHAIQ------YFNGRDYKAENVKHSPNGSTFTLVSPKGSIEINLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S++AA Sbjct: 289 LAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNEN---LLLLDDTYNANVDSLQAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL RI ++GDM E+GE S H + E + V G + + Sbjct: 346 IDVLKGYDA----FRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVLSYGIESAVISE 401 Query: 417 ALPRSIHVHYSETMDG----LFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466 A + + I+ L + VV+ K S S I L + Sbjct: 402 A----VLGKHFTDKAELTAYALDIIKQKLQENQKVVVLAKGSRSMKMEETIYSLKD 453 >gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] Length = 457 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 132/473 (27%), Positives = 210/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +VV + + + +P V D AL +LA R + +A+TGS GKT Sbjct: 59 VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENFLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVSGKHFTDKVEMVDFLVPLIETQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP9-BS68] gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP9-BS68] Length = 457 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 127/475 (26%), Positives = 199/475 (41%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P ++T + AHL+ F EIA K +I +G+ D + L Sbjct: 176 PKTVIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLFLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457 >gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 443 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 208/472 (44%), Gaps = 35/472 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN ++ + + Q V G++ +SR + + F A+ DGH ++ A Sbjct: 1 MN--YSIKKIGAVLSA-VTQGNDQIKVTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+V+ + S +P V D L AL +LA R + +IAITGS GKT Sbjct: 57 LDRGAAAVLVDDNHAISEK---LPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M +S++ KT+ ++NN IGVP+TL MP D + + ELGM G++ L+ Sbjct: 114 TTKDMTAAIVSTVFKTFKTPNNFNNEIGVPMTLLSMPEDTEVLVVELGMDRSGQLTMLSQ 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA+IT I AH+ F IA AK EI GL+ G +F+ +D+ Sbjct: 174 LVQPDIAIITMIGEAHIEFFKTRANIAKAKLEITNGLKADGVLFIPFDEPLL-------- 225 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ + Q + + I N++ L Sbjct: 226 -----------TQAVIMQRVVWFGQNIDAVETASDHTNFIYKNTRFAIPLIGGYNIMNAL 274 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +S KA+ + R + LI + YN+NP ++ A ++ L Sbjct: 275 AAISAGILLHIDLKKAVQALQTFDLTKNRTERLVTARGVILISDVYNSNPTAVAAVLATL 334 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----HVLALKD 416 I + VLGDM E+GE + H L + + N+ V+L G ++ + Sbjct: 335 KAIPAQ---HKYVVLGDMLELGEQANELHAGLGQKVLDANVDGVYLVGKLFNQNMAPMLK 391 Query: 417 ALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S VH T + L L +Q+ GDV+++K+S+ ++N L+E Sbjct: 392 TQFESSDVHQYTTDQLAKLTLDLQTLGEAGDVILLKASHGIHLENVVNALIE 443 >gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae INV104] Length = 457 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFIERAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK Sbjct: 62 GAAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus sp. BH72] gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus sp. BH72] Length = 478 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 200/469 (42%), Gaps = 21/469 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + D +A+ H + + DSR I P + F A++G +DGH+F+ A++ Sbjct: 9 MMSLLDASRALSAHHAVAQGAVRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKA 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ G S+P+ VDD AL LA R R +I +TGS GKTT K Sbjct: 69 GAAAAMVDARGFTEFGDASLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVK 128 Query: 124 EMLTIALSSIKKTYACIG--------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 EM L + + + NN IG+PLTL + + E+GM+H GEI Sbjct: 129 EMCAEILRAQARRDGAGDEAVLATRGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPGEI 188 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT L RP +A++ AHL + E+A K I++GL G +N DD Sbjct: 189 AYLTGLARPTVAIVNNAQRAHLQGLGTLGEVAQEKGAIYQGLGAAGVAVVNADDPHAGYW 248 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + I SFG + AD + S + + EV G H A N Sbjct: 249 RDLNAGRPI---VSFGIDQPAD-VAGECTLHGLGSQLHIAAPQGRGEVELQVPGLHNASN 304 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + A++ L+++ GR + ++D+SYNANP S++A Sbjct: 305 ALGAAAACLAAGVVFEAALEGLALYEGTRGR---LQRRSGPQGAVILDDSYNANPDSVRA 361 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+ G VLGDM E+G+ S H ++ I ++ G Sbjct: 362 GIDVLASTP----GHTFLVLGDMGEVGQTSAQVHDEIGGYAKSKGIDGLYALGEASAIAV 417 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ ++++ L + L VV+VK S R+ + L Sbjct: 418 RNFGEG--AHHFDSVEALVAALAPRLDADAVVLVKGSRFMKMERVADAL 464 >gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC3059-06] gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC3059-06] gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA41317] Length = 457 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGQDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis SK321] gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis SK321] Length = 457 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 H++ Q + I I + DSR I + F +KG DGHDFI A + GA Sbjct: 5 IHEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFIETAFENGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK+M Sbjct: 64 AVTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L P Sbjct: 118 LAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++T + AHL+ F EIA K +I +G+ + D + L K Sbjct: 178 TAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPVVEDYL------PTDK 231 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + FG+ + + + + + + G + A N ++ + Sbjct: 232 KVVRFGQGAELEIT----DLVERKDSLTFKANFLNQALDLPVTGKYNATNAMIASYVALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + +A R + + A ++ + YNANP +MK + S I Sbjct: 288 EGVSEEQIRQAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 345 NEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 405 HVYYFKKTEDRDQFEDLVKQVKESLGTNDQILLKGSNSMNLAKLVESLENETK 457 >gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] Length = 948 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 137/451 (30%), Positives = 227/451 (50%), Gaps = 8/451 (1%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + SI+S++I + FFAIKG + DG+ ++ A Q GA LV+ N + Sbjct: 505 NSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQKKSKKK-- 562 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VDD L L + + R + II+ITGS GKT+ KE+L LS I Sbjct: 563 ----IVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPK 618 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 S+NN GVPL+L + + +FGIFE+GM GEI +L+ +++P + VIT I+ AH+ NF Sbjct: 619 SFNNKFGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFK 678 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 I ++A AK+EI ++ G + LN DD F+ L K + I K+K+A+ L Sbjct: 679 NIHQVALAKSEIINNIKTNGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLE 738 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K + + + V + K + I + +N+L T+ I+SI + Sbjct: 739 KIVKEKSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYE 798 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GRG + LN+ ++DESYN+NP S+K+AI ++ + +L DM E+ Sbjct: 799 IAKGRGDIIKVKLNKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKK-KLILSDMLEL 857 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G S+ H++ + ++ ++ ++ + G H+L L + + + I++ L Sbjct: 858 GNYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDL 917 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE-EFPAI 471 + D +++K SNS G L+N L +F A+ Sbjct: 918 NNNDYLMIKGSNSTGLNNLVNKLKTGKFNAL 948 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 75/453 (16%), Positives = 152/453 (33%), Gaps = 38/453 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 G+S +S FFAI+G DG FI HA++KGA +++ + Sbjct: 16 NHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIISEQKFEGIKNK--V 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------------ 131 +V L++L+ + +IA+TG+ GK++ + L+ Sbjct: 74 LFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLNLGNKKVASIGTL 133 Query: 132 --SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 K + + + + + S G + ++ + + Sbjct: 134 GVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSHGLKQNRLDGLKFNTTIF 193 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL + +K +FE L+ GTI + ++ LK S + Sbjct: 194 TNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYKNLKRISLNNKLDLQA 253 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + D + ++ +E++ K ++ + IG +N+ M + Sbjct: 254 LSKSNNGIDIY--SHQFRDDKQIVEIKYNQKHYKLQINLIGKIQLKNLFMAMLAAKKSNL 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D +K S GR ++ N L Y P ++K ++ L + Sbjct: 312 KFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILD---YAHTPDALKTCLTNLKE--QFEN 366 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI- 422 R V G G + ++ V+L+ + ++ A+ ++I Sbjct: 367 KRIFIVFG----CGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAIKKTID 422 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + L GD++V+ K Sbjct: 423 KSKVFEISSRSKAIHKAILDLKTGDILVIAGKG 455 >gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] Length = 445 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 124/470 (26%), Positives = 195/470 (41%), Gaps = 30/470 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T + +Q G V + DSR + P F A++G +DGHDFI A+ Sbjct: 1 MLTLQTVADLLQAPLQGDPHLLGLPVQALCTDSRRLQPGSVFVALRGERFDGHDFIPQAL 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KGA V+ + P F V D L A ++A A R + ++AITGS GKTT Sbjct: 61 SKGAVAVISQRPVEG-------PHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML ALS ++NN IGV TL R+ + F + E+ M GEIR L + Sbjct: 114 TKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRRLAQM 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP A+IT I AH+ E IA+AK E+ + G LN +D A + Sbjct: 174 ARPTHALITHIGTAHIGRLGSREAIAAAKCELLQ-ELGQGIAVLNGEDPLLLATAASLWS 232 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T ++ + E + V L G+ + G Sbjct: 233 GKTLTYGLAQGDLRGEWDPQAQTVTVEGLTLPVPLPGRHHALNWM--------------G 278 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +++ + + + R R G + DE+YNA+P +M I+ L Sbjct: 279 VLAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLAGDVEIWDETYNASPEAM---IAALH 335 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDALP 419 ++ RR A+LG M E+GE + + ++ + + VWL + L D Sbjct: 336 LLAQTAGKRRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLDPDGEMQPLVDE-K 394 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + V E L +Q + GD ++ K++ + R+++ L+ + Sbjct: 395 PAAEVERFEEASALVEGLQQQVRAGDRLLFKAARAVELERVLHRFLQAWQ 444 >gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C300] gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C300] Length = 457 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ QA+ + + + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVE------GYPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSKLAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGADLEVT----DLIERKDSLTFKANFLGQALDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 LANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] Length = 465 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 219/472 (46%), Gaps = 18/472 (3%) Query: 1 MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ A+ + + ++ D+R + F + G + DGH+FIL Sbjct: 2 MISL-TVKEIAMAVGAINDTSKWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 AV+ GA + + + + L P+ V+D L AL LA + ++ ITGS Sbjct: 60 AVENGAAVSLWSKPLKDLPLELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSN 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK+M LSS + + G++NNHIG+P+T+ MP++ + I E+GMS GEI+ Sbjct: 120 GKTTTKDMADAVLSSQYRVHKTQGNFNNHIGLPITILEMPIETEVVILEMGMSRAGEIKV 179 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ L +P +A+IT I +H+ F IA AK EI GL++ G + ++ LL+ Sbjct: 180 LSDLAKPDVAIITMIGESHIEFFGSRAGIADAKMEICSGLKENGVLIYPGEEP---LLQE 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + L + +FG S D Q+ V + + V +G + N L Sbjct: 237 RVAVLKGSQLKTFGTSPENDLYPLNIDAQMNQTS-FVTNERPDLVVSLPVLGTYNVNNAL 295 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L L ++ + L+ F + R ++++++YNANP +MKA + Sbjct: 296 AALMAGMTLGISIEKSAPKLAQFQLTKNR---TEWLKGINESSILNDAYNANPTAMKAVL 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 S + G++I VLGDM E+GE S H+ + + L I V L G + L + Sbjct: 353 DNFSTFT--NTGKKIVVLGDMLELGEQSTQLHLSVKDSLDPTQIEKVVLYGEQMNVLYEV 410 Query: 418 LP---RSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L ++ Y L F++ + GD +++KSS ++ L Sbjct: 411 LKGKFDEENLSYFTGAKEPLIQFVKKQIEHGDYILLKSSLGTDLLSVVRALQ 462 >gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R] gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R] Length = 514 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 127/499 (25%), Positives = 202/499 (40%), Gaps = 45/499 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T ++ + G G V+ + DSRS+ P F A+ G DGHDF Sbjct: 1 MITM-TLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL---------------------GALNK 97 A++KGA V+ + + +P V V AL++ Sbjct: 60 TAIEKGAVAVLAARE-------VDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSR 112 Query: 98 LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 LA + ++AITGS GKT+TK+ + L T A GS+NN +G+P T Sbjct: 113 LARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTA 172 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R D + + E+ +G I+ LT + P IA + + AHL F E IA AK EI Sbjct: 173 LRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEI 232 Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQ 269 + G LN DD F + ++ A + G++ +D+ + Sbjct: 233 IEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFSTDAGQANKSDYWATSISLDAVAR 292 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + + S V G H N L I + + L Sbjct: 293 ASFTLNTKDGSWPVALQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMD 352 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSF 388 + + T+I++SYNANP SM+A I+ L+ + E AVLG M E+G+ + Sbjct: 353 VKTRADGV--TIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDASEA 410 Query: 389 HIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H +L L+ YN+ + G + + A + H +D + + D Sbjct: 411 HAELGAELAKYNVQELVAVGENPNCAALAESAASLGVSTHVVSDVDAALELLAGHIKRDD 470 Query: 446 VVVVKSSNSCGFYRLINLL 464 VV+VK+SN+ +R+ L Sbjct: 471 VVLVKASNADRLWRVAEAL 489 >gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 456 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 212/473 (44%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 TF+++ ++ + P + DSR I + FF +KG DGH FI+ A + Sbjct: 3 LTFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P VD+VL AL +LA + K + A+TGS GKTTTK Sbjct: 62 GAAATLSEKELD------DYPYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I L+ + + Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQ 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AHL F EIA K +I +G++ + + D + L ++ + + Sbjct: 176 PKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGMKDGTLLVVPADKIINDFLPSQLNVVR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D + K + + + + G + A N ++ + Sbjct: 236 ----------FGPDEDIFLTKLEERKDSLSFETNFLDNAIDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D KA + R + + ++ + YNANP +M+ + S I Sbjct: 286 LKEGVTQDKIQKAFATLELTRNRTEWKKAKNGAD---ILSDVYNANPTAMRLILETFSTI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALP 419 + +GR++AVL DM E+G S+ H + L+ +S ++L G + AL K+ P Sbjct: 343 PFNEKGRKLAVLADMKELGVDSKQMHSAMITSLNPEILSEIFLYGEDMAALFAYAKEIFP 402 Query: 420 RSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + + L ++ +L D +++K SNS L+ L + Sbjct: 403 PGKAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEKLEND 455 >gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CCRI 1974] gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CCRI 1974M2] gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA41301] Length = 457 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G ++ L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENETK 457 >gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Oceanobacillus iheyensis HTE831] gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15) [Oceanobacillus iheyensis HTE831] Length = 455 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 229/467 (49%), Gaps = 17/467 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+T L + H I + ++ D+R + + I G +DGH+FI A++ Sbjct: 2 LFTVQWLAELFPKHQGKISTDITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKN 61 Query: 64 GAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + + S S PVF V+D + A+ +LA + T++ +TGS GKTTT Sbjct: 62 GAIATLWDKSIPLPSEWDNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++T + + KT A G+ NNHIG+PLT+ M D + + E+GMS GEI L+ + Sbjct: 122 KDLITSVVKTSYKTTATQGNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P VIT I +H+ N + IA AK EI EG++ G +F++ D+ LL ++ + Sbjct: 182 EPDYTVITNIGESHIENLGSRKGIAKAKLEIIEGIKSNGNLFIDDDEP---LLAKENIDM 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I G +K +D + K +++ EV + + +G H A+N + I Sbjct: 239 DDSQIIGIGFTKESDINISNVKVHPDRTTFEVTDKPYH----VNLLGEHHAKNAAFAISI 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + A + E G R+ +I+++YNA+ SMKA+I V+ + Sbjct: 295 GKALNISHENIQLAFNK---LEVTGMRFELETGINGVHIINDAYNASATSMKASIQVVKE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 + G ++ VLGD+ E+G S+ +H +AEV+ IS ++ G + D + + Sbjct: 352 M--EGFQNKVLVLGDILELGTYSEHYHRSIAEVIDSR-ISEIYTYGEQAFYIYDEITKQH 408 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++VHY + + + ++ L + +++ K+S F I L + Sbjct: 409 PKVNVHYIKQREDVVPSLKEHLNNQTLILFKASRGMKFEMFIKELQQ 455 >gi|71082737|ref|YP_265456.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Candidatus Pelagibacter ubique HTCC1062] gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1062] Length = 948 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 136/451 (30%), Positives = 226/451 (50%), Gaps = 8/451 (1%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + SI+S++I + FFAIKG + DG+ ++ A Q GA LV+ N + Sbjct: 505 NSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQKKSKKK-- 562 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VDD L L + + R + II+ITGS GKT+ KE+L LS I Sbjct: 563 ----IVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPK 618 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 S+NN GVPL+L + + +FGIFE+GM GEI +L+ +++P + VIT I+ AH+ NF Sbjct: 619 SFNNKFGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFK 678 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 I ++A AK+EI ++ G + LN DD F+ L K + I K+K+A+ L Sbjct: 679 NIHQVALAKSEIINNIKTNGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLE 738 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K + + + V + K + I + +N+L T+ I+SI + Sbjct: 739 KIVKERSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYE 798 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GRG + L + ++DESYN+NP S+K+AI ++ + +L DM E+ Sbjct: 799 MTKGRGDIIKVKLKKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKK-KLILSDMLEL 857 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G S+ H++ + ++ ++ ++ + G H+L L + + + I++ L Sbjct: 858 GNYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDL 917 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE-EFPAI 471 + D +++K SNS G L+N L +F A+ Sbjct: 918 NNNDYLMIKGSNSTGLNNLVNKLKTGKFNAL 948 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 75/453 (16%), Positives = 152/453 (33%), Gaps = 38/453 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 G+S +S FFAI+G DG FI HA++KGA +++ + Sbjct: 16 NHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIISEQKFEGIKNK--V 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------------ 131 +V L++L+ + +IA+TG+ GK++ + L+ Sbjct: 74 LFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLNLGNKKVASIGTL 133 Query: 132 --SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 K + + + + + S G + ++ + + Sbjct: 134 GVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSHGLKQNRLDGLKFNTTIF 193 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL + +K +FE L+ GTI + ++ LK S + Sbjct: 194 TNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYKNLKRISLNNKLDLQA 253 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + D + ++ +E++ K ++ + IG +N+ M + Sbjct: 254 LSKSNNGIDIY--SHQFRDDKQIVEIKYNQKHYKLKINLIGKIQLKNLFMAMLAAKKSNL 311 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D +K S GR ++ N L Y P ++K ++ L + Sbjct: 312 KFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILD---YAHTPDALKTCLTNLKE--QFEN 366 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI- 422 R V G G + ++ V+L+ + ++ A+ ++I Sbjct: 367 KRIFIVFG----CGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAIKKTID 422 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + L GD++V+ K Sbjct: 423 KSKVFEISSRSKAIHKAILDLKTGDILVIAGKG 455 >gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 461 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 205/472 (43%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + S+ + +N I DSR+I + F ++G DGHDFI A + Sbjct: 3 LTLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + P V++ L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSERAIS------GRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I+ L+ + R Sbjct: 116 DMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIA++T I AHL+ F E+IA K +I +G++ G + D L + Sbjct: 176 PHIALLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + V G + A N ++ + Sbjct: 236 FGDHQELVVEDIKEC----------KDSLTFRTNVLPRPVTLPLTGKYNATNAMIAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R L+ + YNANP +M+ + + I Sbjct: 286 KLLAVPDEDIIEALET---VKLTRHRTEWVKAANGADLLADVYNANPTAMRLILETFAAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + G++IAVL DM E+G S + H L L I + G + AL + Sbjct: 343 PANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQALAKLASQDYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S V + + + + ++ + L D +++K S+S +++ L Sbjct: 403 SGRVSFFKKNNREDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRLTA 454 >gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Desulforudis audaxviator MP104C] gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Desulforudis audaxviator MP104C] Length = 470 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 212/465 (45%), Gaps = 17/465 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ I P V ++ D+R +A E F A++G +DGHDF AV +GA Sbjct: 5 TIAEIRAVTGAEIIQGEPSARVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V+ ++ + V V D L AL LA+ R R +IA+TGS GKTTTK++ Sbjct: 65 CGLLVSREVSV---PSGVAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDL 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 LT L++ + A + NN IG+PLTL + + + ELGM GEI L + P Sbjct: 122 LTAVLAARFRVLATRENLNNEIGLPLTLLDVDPVHEVAVVELGMRAPGEIDLLARICEPT 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 VIT I HL + IA AK E+ + + +G L+ + + + Sbjct: 182 GGVITNIGETHLELLGSVANIARAKGELLDHIPPSGFAVLHAESPGMDEQARRCRG---- 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + FG+S++ADF+L ++ + S V+ G E G H A N L + + Sbjct: 238 RVVRFGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVGLE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L V L R + + G T+I+++YNA+PAS+KAA+ VL++I+ Sbjct: 298 LGLAVSEIRAGLEQARASSLR----QAIVKAGGLTIINDTYNASPASVKAALEVLAEIAA 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422 +A+LG M E+G S H ++ + + + G + + D + Sbjct: 354 --GRSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTMGELAVGIADGAREAGLPA 411 Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + T++ + + V++VK S + R++ L E Sbjct: 412 SRIWACHTLEETVDTARRLAGENVVILVKGSRAFQMERIVKGLAE 456 >gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 2503V10-D] gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 2503V10-D] Length = 455 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LV P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|33603177|ref|NP_890737.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella bronchiseptica RB50] gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella bronchiseptica RB50] Length = 945 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 116/437 (26%), Positives = 192/437 (43%), Gaps = 21/437 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I E F A+ G ++DGHD++ A GA VV + +++P + Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA----DVALPQLVLG 565 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNH 146 D L AL ++ A R ++A+TGS GKTTTKEM++ L+ + G++NN Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FELGM+H GEI L + P +A++T H +E + Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + L + G D+ + + G + + FG D + Sbjct: 686 AHENGAVISALPEDGVAVYPGDEPYAAIWDK---LAGARRVLRFGLQPGLDVYAERVVTQ 742 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + S E+ G H +N L + A + T I AL+ F GR Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + LID++YNANP S +AAI VL+++ R VLGDM E+G+ Sbjct: 803 MQHRQMSDG---TVLIDDTYNANPDSARAAIDVLARLPA----PRALVLGDMGEVGDNGP 855 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H ++ + + I + G A + ++D + ++ L Sbjct: 856 AMHREVGDYAREHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS- 911 Query: 447 VVVKSSNSCGFYRLINL 463 +++K S R++ Sbjct: 912 ILIKGSRFMRMERVVTA 928 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 163/479 (34%), Gaps = 49/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L ++G + +DSR I P + F A G DG F+ A+ +GA Sbjct: 15 LDQALAWLRGCVAPTAD------LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGAS 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ T+ A + V + L LA R +++AITG+ GKT+ + Sbjct: 69 AILYETEG-APVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQ 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGM 169 L L+ + K IG+ + +L D L Sbjct: 128 WLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEA 187 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S +G + +R +A T + HL ++ AKA +F+ + + D Sbjct: 188 SSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAAVVNADDP 247 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + LL + AL + AD R + + + L ++V +G Sbjct: 248 AGERLLASLPAALKT---GYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDE 344 H N+L+ G +S L + + L+ P +GR + L+ Sbjct: 305 QHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVV 364 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ A++ L ++ GR + V G GE ++ + V Sbjct: 365 DYAHTPDALARALTALRPVAQARGGRLVCVFG---CGGERDPGKRPEMGRIAVER-ADRV 420 Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KS 451 ++ + + + +P + + + S+ DV+++ K Sbjct: 421 VVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAA-PDDVILLAGKG 478 >gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1087-00] gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1087-00] Length = 457 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALYLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457 >gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas naphthalenivorans CJ2] gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 466 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 126/462 (27%), Positives = 198/462 (42%), Gaps = 17/462 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + L + + + D+RS+ P + F A+KG H+D H+F+ A + Sbjct: 1 MMSLQQALGCLPSARLVGDGHVVPLRVHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + +P V D AL +LA R + +IA+TGS GKTT Sbjct: 61 GAVAAIAQHGLREA----GLPGLEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVT 116 Query: 124 EMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 +M+ L + K A G+ NN IGVPLTL R+ G+ ELGM+H GEI +L HL Sbjct: 117 QMIAAILRAWKPDAALATEGNLNNDIGVPLTLLRLRASHQVGVIELGMNHPGEIAYLAHL 176 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP +A++ HL + +E +A + L+ G DD + + + Sbjct: 177 ARPSVALVNNAQREHLEFMATVEAVAQENGSVLASLDADGIAVFPADDVYTAVWRR---L 233 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + +F + AD + + +E Q +E H G H +N L Sbjct: 234 AGERQVLTFALAAPADVT-ASARWEGDGWQVEAQTPSGPIEFSLHIAGRHNVKNALAATA 292 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + LS F P +GR + L TLID++YNANP SM+AAI VL+ Sbjct: 293 SALAAGVPLSFIAAGLSAFVPVKGRSRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLA 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ G R+ V+GDM E+G FH + + I ++ G A Sbjct: 353 ELP----GPRLLVMGDMAEVGSQGPQFHDEAGRNAAAQGIEKLFTLGEQSQGACAAFGEG 408 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + M L + + L ++VK S R++ Sbjct: 409 C---HFSDMAELTAAVVAELPHVTSILVKGSRFMKMERIVQA 447 >gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae 70585] gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae 70585] Length = 457 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +++ QA+ + + + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLTPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 457 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 119/469 (25%), Positives = 201/469 (42%), Gaps = 30/469 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLAAKNDVSQFENVTFRNAEFDSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + P VDDVL A LA ++ ++A+TGS GKTTTK+M Sbjct: 64 TATLSERPVAEG------PYVLVDDVLAAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +G++K G + + D + L + + Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAKGKMQIADGMKKGGLLLVPADKIVNDFLPDQQKVVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ + Sbjct: 236 --------FGPDADICLTRLEERKDSLTFEANFLEQAIDLPVTGKYNATNAMIASYVALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A + R + + A ++ + YNANP +M+ + S I Sbjct: 288 EGVSESAIRQAFAQLELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSAIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSI 422 GR+ AVL DM E+G S+ H + L+ I+ ++L G + AL + Sbjct: 345 SQGGRKAAVLADMKELGADSKLMHGAMITSLNPEVITDLFLYGEDMEALYVYAREIYPPN 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VHY + + L +++ L D +++K SNS +L+ +L Sbjct: 405 RVHYFVKNADKDQFEDLTKTVKTWLQSSDQILLKGSNSMKLDKLVEVLE 453 >gi|33598266|ref|NP_885909.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella parapertussis 12822] gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella parapertussis] Length = 945 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 116/437 (26%), Positives = 192/437 (43%), Gaps = 21/437 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I E F A+ G ++DGHD++ A GA VV + +++P + Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA----DVALPQLVLG 565 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNH 146 D L AL ++ A R ++A+TGS GKTTTKEM++ L+ + G++NN Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FELGM+H GEI L + P +A++T H +E + Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + L + G D+ + + G + + FG D + Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDK---LAGARRVLRFGLQPGLDVYAERVVTQ 742 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + S E+ G H +N L + A + T I AL+ F GR Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + LID++YNANP S +AAI VL+++ R VLGDM E+G+ Sbjct: 803 MQHRQMSDG---TVLIDDTYNANPDSARAAIDVLARLPA----PRALVLGDMGEVGDNGP 855 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H ++ + + I + G A + ++D + ++ L Sbjct: 856 AMHREVGDYAREHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS- 911 Query: 447 VVVKSSNSCGFYRLINL 463 +++K S R++ Sbjct: 912 ILIKGSRFMRMERVVTA 928 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 163/479 (34%), Gaps = 49/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L ++G + +DSR I P + F A G DG F+ A+ +GA Sbjct: 15 LDQALAWLRGCVAPTAD------LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGAS 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ T+ A + V + L LA R +++AITG+ GKT+ + Sbjct: 69 AILYETEG-APVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQ 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGM 169 L L+ + K IG+ + +L D L Sbjct: 128 WLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEA 187 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S +G + +R +A T + HL ++ AKA +F+ + + D Sbjct: 188 SSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAAVVNADDP 247 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + LL + AL + AD R + + + L ++V +G Sbjct: 248 AGERLLASLPAALKT---GYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDE 344 H N+L+ G +S L + + L+ P +GR + L+ Sbjct: 305 QHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVV 364 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ A++ L ++ GR + V G GE ++ + V Sbjct: 365 DYAHTPDALARALTALRPVAQARGGRLVCVFG---CGGERDPGKRPEMGRIAVER-ADRV 420 Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KS 451 ++ + + + +P + + + S+ DV+++ K Sbjct: 421 VVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAA-PDDVILLAGKG 478 >gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae G54] gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54] gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae G54] Length = 457 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457 >gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 484 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 201/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ QA+ + + ++ DSR I + F +KG DGHDFI A + Sbjct: 30 LTIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 88 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 89 GATVTLSEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTK 142 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 143 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 202 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 203 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIEDYL---PTDKK 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + S + + D RK + + G + A N ++ + Sbjct: 260 VVRFGSGAELEVTDLIERKDSLTFKA-------NFLGQALDLPVTGKYNATNAMIAAYVG 312 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 313 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 369 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + + G + L + Sbjct: 370 PANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLDTIIFYGEDIAELAQLASQMFP 429 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 430 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 482 >gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae SP195] gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae JJA] gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae SP195] gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae JJA] gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA17570] Length = 457 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 202/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PI 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455 >gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 143-D] gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 143-D] Length = 455 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LV P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners AB-1] gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 09V1-c] gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 01V1-a] gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 1401G] gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 09V1-c] gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 01V1-a] gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 1401G] Length = 455 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] Length = 464 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 172/465 (36%), Positives = 241/465 (51%), Gaps = 12/465 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWTF +L +A G G+ +GI+ DSR++ P + F A++G DGHDF+ A Sbjct: 9 LWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFAS 67 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 GA L V + V DV AL +AV AR R + +TGSVGKT+ Sbjct: 68 GAVLAVTRRPIE------GGACLLVPDVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSV 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +M+ L + ++ I S+NNHIGVPLTLARMP D + +FE+GM+H EI L+ V Sbjct: 122 TQMVMQGLQQAGRAHSAIKSFNNHIGVPLTLARMPADTERAVFEIGMNHADEITPLSEFV 181 Query: 183 RPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 PH VITT+ H NF E +A+AKAEIF+GL G LN D+ +F+ L K+ Sbjct: 182 APHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLAILNADNRWFDHLSTKARG 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G FG++ D QL + + +++ + + G+ + G H A N L L Sbjct: 242 SGALVAA-FGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALL 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L D+DT++ AL F EGRG+ G T+IDESYNANP SM A ++ L Sbjct: 301 MLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSMTATLASLG 360 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 Q GR++AVL DM E+G H LAE + + V+L+G + L DALP Sbjct: 361 Q--RETAGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYLAGPLMKHLWDALPSG 418 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + Y+ T L + L GDVV++K SN + LL Sbjct: 419 LKGGYAATAADLLAAVTEGLQAGDVVMLKGSNGSKAGLIAKALLA 463 >gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] Length = 464 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 206/475 (43%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L Q ++G +G + V IS D+R + FFA+KG +D HD++ A Sbjct: 1 MIKQTT-QQLAQTLKGKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +++G +VV ++ ++++P V+D AL +LA + +A+TGS GKT Sbjct: 59 IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVPLTL R+ + F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLIPEHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIVNLAHYYPEWQK 233 Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 Y+ K ADF + S + +E+ +G H N Sbjct: 234 EIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR N ID+SYNAN SMK+ Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKDN---VLFIDDSYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL Q RI V+GDM E+G+ S + H ++A+ + + V G + Sbjct: 351 AVSVLKQYPA----FRIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ + + +V++ K S S +I L Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASL 456 >gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2052A-d] gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners ATCC 55195] gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 60-B] gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2052A-d] gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners ATCC 55195] gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 60-B] Length = 455 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ LV P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2062A-h1] gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2062A-h1] Length = 455 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FAINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 455 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 201/464 (43%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + I +G+SIDSR+I + F A+ GP +DGHD++ Sbjct: 1 MLKALQLSEVSAPLDARLIAG--DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ S +P V D AL +L R + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVPDST----LPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + +A G+ NN +G PLTL + + + ELG S +GEI + Sbjct: 115 TVKEMLASILRTRGPVHATRGNLNNDLGAPLTLLELAPEHTAAVIELGASRIGEIAYTVA 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+A+I AH+ F G E+I AK EI EGL+ G LN DD F + KA+ Sbjct: 175 MTRPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDSAGIAVLNLDDKAFPIWKAR-A 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A ++ S F + ++ V + +G H N L Sbjct: 234 AGRQVLSFALTDSSADFFASDIGRDARGCPSFKLHSPKGVEAVQLNLLGTHNVANALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + L+ P +GR +ID++YNANP SM AA+ +L Sbjct: 294 AAAHAMGVSLFGIVTGLNAVQPVKGRTVAQLAKNG---MRVIDDTYNANPTSMCAAVDIL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + S GR + VLGD+ E+GE ++ H ++ + +S ++ G + A Sbjct: 351 AGFS----GRTVLVLGDIGELGEWAEQGHREVGAYAA-GKVSALYAVGPMMAHAVAAF-- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H + + L + +++K S S ++ L Sbjct: 404 GEHARHFASQADLIAALGVEQDPNTTILIKGSRSAVMENIVAAL 447 >gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] Length = 457 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 204/473 (43%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H+++QA+ + I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAVVTLSEKEVA------NHPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVIRFGQGAELEVT----DLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 S + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 SANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] Length = 453 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 142/465 (30%), Positives = 208/465 (44%), Gaps = 23/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+ Q G G V + DSR+ P + F A+KG H+D HDF+ + + Sbjct: 1 MLMLSDVAQLAGGRLAG--ADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V D + + VDD AL +LA R R + ++ ITGS GKTT K Sbjct: 59 GAAGALVRQDFALP----GVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVK 114 Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EMLT L++ G++NN IG+PLTL + + + E+GM+H GEIR+LT Sbjct: 115 EMLTAILAAHAGRDTVLATAGNFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTG 174 Query: 181 LVRPHIAVITTIAPAH-LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP +A++ AH FSG +IA AK+EIFEGL + G +N DD + Sbjct: 175 LARPRVALVNNALRAHLGGGFSGTADIARAKSEIFEGLAEDGVAVINADDPHAAI---FR 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + + SFG AD R + + + V G H +N L Sbjct: 232 AAAAGRRLLSFGL-GEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNVRNALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + L+ F GR + TLID++YNANP SMKA I V Sbjct: 291 AAAALALEVPLAAIAAGLAGFAGVRGR---LQRKHAGNGATLIDDTYNANPDSMKAGIDV 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q R V+GD+ E+GE + + H ++ + + G A Sbjct: 348 LLQALA----PRWFVMGDIGELGENAAALHAEVGAYARERGLDALLTLGDLSRHAAAAFG 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + +T+D L ++ S L V+VK S R++ L Sbjct: 404 ATAN--HFDTLDALLSYLDSHLPADATVLVKGSRFMRMERVVEHL 446 >gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 456 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 204/470 (43%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + ++ DSR + + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVA------GGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL+K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLKKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++H++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGANSKSMHGSMITSLNPEIVTHLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V+Y + + L ++ +L D +++K SNS +L+ L + Sbjct: 405 KVYYFIKNDEKDQFEQLTKAVRENLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] Length = 457 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 211/469 (44%), Gaps = 23/469 (4%) Query: 6 TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G I G +N +S D+R++ F A+ G +D HDF AV+ Sbjct: 5 SLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A ++V + L+I V+D AL +L+ + +AITGS GKTT K Sbjct: 65 NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L K G++NN IGVPLTL R + D+ + ELG +H+GEI + T LV+ Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ +A AHL F I + AK EIF+GL T +N + + + A Sbjct: 180 PQVALVNNVAAAHLEGFGSINGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWND-VLADK 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S SK F ++ ++Q S+ V IG H N L + Sbjct: 239 SVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAALS 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 A +D L+ +GR + + + N LID+SYNA+ +M +++ Sbjct: 299 IQFGASLDEVKNGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 +G+R +LG+M E+G+ S + H + E + + HV G + + + Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407 Query: 424 VHYSETMDGLFLFIQSSLV-DGDV---VVVKSSNSCGFYRLINLLLEEF 468 + T + I+ L V ++VK +NS G ++ L E F Sbjct: 408 GTHFTTHQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456 >gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] Length = 453 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 204/472 (43%), Gaps = 31/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I + P N + DSR I + F +KG DGHDFI A + Sbjct: 3 LTLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G + + SL +P V+D L AL +LA ++ +IA+TGS GKTTTK Sbjct: 62 GCVVTLSE-------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ + + Sbjct: 115 DMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P ++VIT AHL F EEIA K +I +G+E + + +LL Sbjct: 175 PSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPAYPIADKLL------PS 228 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG+ + + + + ++ G + A N ++ + Sbjct: 229 HVDLIRFGEQADLQVT----SLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAMVASYVG 284 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + AL+ R ++ + YNANP +M+ + S I Sbjct: 285 KTLGVSNEAIKSALA---SLNLTRNRTEWKKAANGADILSDVYNANPTAMRLILETFSSI 341 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 342 PANEGGKKIAVLADMKELGSQSVELHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFP 401 Query: 422 -IHVHYS-ETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V++ + + L ++ L D ++ K SNS +++ + + Sbjct: 402 IGKVYFFRKNAEQDQFGDLVKQVKEVLGGKDQILFKGSNSMNLGKVVEAVEK 453 >gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica W22703] Length = 454 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 136/469 (28%), Positives = 212/469 (45%), Gaps = 20/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + H L + IG + ++ID+R + P F A+KG +DGHDF Sbjct: 1 MIKV-SLHFLSTLLNAEYIGRD-SVDITEVTIDTRKVTPGCLFVALKGERFDGHDFAED- 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ + P V D AL +LA R + A ++A+TGS GKT Sbjct: 58 ----AVAAGAGALLVSKHLLVEAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K G++NN IGVPLTL R+ + DF + ELG +H+GEI + T Sbjct: 114 SVKEMVAAILRQCGKVLYTSGNFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTD 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 174 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G +++ DF + + ++ + ++ + G H N L Sbjct: 234 NKRVWRFSPHG-AEDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAA 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L+ GR A L+D+SYNAN SM AA VL Sbjct: 293 ALAMSVGASLAAVREGLTQLQAVPGRLFPIELAAG---KLLLDDSYNANVGSMTAAAQVL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+GE + H + E I+ V G L DA Sbjct: 350 AEMP----GYRVMVVGDMGELGETAVDCHRQVGEAAKQAGINKVLSVGALSQTLSDA--- 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467 S + + + L + L++ V V++K S S ++ L E+ Sbjct: 403 SGCGEHFQDKNTLAARVSELLLEHPVITVLIKGSRSAAMENVVRALQEK 451 >gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 454 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 136/469 (28%), Positives = 211/469 (44%), Gaps = 20/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + H L + IG + ++ID+R + P F A+KG +DGHDF Sbjct: 1 MIKV-SLHFLSTLLNAEYIGRD-SADITEVTIDTRKVTPGCLFVALKGERFDGHDFAED- 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ ++ P V D AL +LA R + A ++A+TGS GKT Sbjct: 58 ----AVAAGAGALLVSKHLLVAAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K G++NN IGVPLTL R+ + DF + ELG +H+GEI + T Sbjct: 114 SVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTD 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 174 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G +++ DF + + + + ++ + G H N L Sbjct: 234 NKRVWRFAPLG-AEDIDFFASDVRITPQVTHFTLHSPFGTVGIELPLPGRHNIANALAAA 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L+ GR A L+D+SYNAN SM AA VL Sbjct: 293 ALAMSVGASLAAVREGLTQLPAVPGRLFPIELAAG---KLLLDDSYNANVGSMTAAAQVL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+GE + H + E I V G L DA Sbjct: 350 AEMP----GYRVMVVGDMGELGETAVDCHRQVGEAAQQAGIDKVLSVGTLSQTLSDA--- 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467 S + + + L + L++ V V++K S S ++ L E+ Sbjct: 403 SGCGEHFQDKNTLAARVSELLLEHPVITVLIKGSRSAAMENVVRALQEK 451 >gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] Length = 467 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 198/470 (42%), Gaps = 18/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M T ++ I G + G+S DSR+I P E + + G +DG FI Sbjct: 9 MIE-KTLSEIAHMINGEISDEKFSAIKIKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKE 67 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KGA +++ D ++SIP V D AL LA A R +I ITGS GK Sbjct: 68 CEDKGAEAFIID-DPTKINKTVSIPYVRVADTKKALQDLATAYRKELSCKVIGITGSNGK 126 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L LS KT G+ NN IGVP T+ + D + I ELG + G+I + Sbjct: 127 TTTKDLLYKILSEKYKTQKTCGNLNNEIGVPKTVLSLDPDTEVAIIELGTDNFGDISLTS 186 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +V+PHIA+IT I AHL N I AK EI EG+E G N DD + Sbjct: 187 RMVKPHIAMITNIGDAHLHNLKTRSGILKAKLEILEGMEDDGIFIYNIDDPTMKE--EIP 244 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + SFG+S ADF++ K + S E H + N+ Sbjct: 245 TYDIKQKVLSFGRSDKADFKIVFEKSPTSIIR-------FSHENDHFEVPLMGEHNIYNA 297 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +V I + F + R L F ++D+SY +NP S+ A + Sbjct: 298 AAVVMISEMLGLNKEMIDAGFMEVKSSQNRTE-LLECDGFDILDDSYKSNPQSLLAGLET 356 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + G R+I L DM E+GE H ++ + L I + G + +A Sbjct: 357 TYML--EGYKRKIVCLADMLELGENEVDLHREVGKKLDSKKIDYALFYGPLAKQMYEASL 414 Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + Y D L ++S ++ ++ VK S+ +I + Sbjct: 415 ENFPADRTFYFNHKDELIEKLKSLVIGASLIFVKGSHGMHMEEIIESIKN 464 >gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] Length = 454 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 213/464 (45%), Gaps = 18/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + V GIS D+R+I F A++G ++DG ++I A +KGA Sbjct: 5 NLKTITELTNTIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VVN D PV VD+ + LA +IAITGS GKTTTK++ Sbjct: 65 SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L K +YNN IG+ T+ + D + + E+G + GEIR LT++ P Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +HL N E IA AK EI EGL++ G LN DD +K + + Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLP--E 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++D+++ K S +G+H N M++ + + Sbjct: 240 KNITFGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D K L R + F ++++SY +NP S+ + + + Sbjct: 296 MGLDYSDIAKGLKNIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 HG R+IAVLGDM E+G+ + H ++ + ++ I +V +G + + Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y ET + L +Q +VD +V+VK+S++ F +L+ + E Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453 >gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 457 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ QA+ + + + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA +S + A+TGS GKTTTK Sbjct: 62 GAVVTLSEKEVA------NHPYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ P D + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTEKLVLEMGQDHLGDIHLLSKLAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEVT----DLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIAAYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS ++ V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLNTVIFYGEDIAELSQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455 >gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 11V1-d] gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 11V1-d] Length = 455 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455 >gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M334] gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M334] Length = 456 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 204/473 (43%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + I P + DSR IA + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEIA------NHPYILVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEI----IDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGINDQILLKGSNSMNLAKLVESLENE 455 >gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus infantis ATCC 700779] gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 457 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 205/473 (43%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + DSR I P + F +KG DGHDFI A + Sbjct: 3 LTIHEVARVVGAKNDVTGYADSPLVKAEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ P V+DVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEQEVA------DHPYILVEDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+EK + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKLQIADGMEKGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + FG + + + + ++ + G + A N ++ + Sbjct: 230 EQKVVRFGPGAELEIT----ELTERKDSLTLKANFLEKSLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVTEEQIGQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G+++AVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKLAVLADMKELGDQSVQLHNQMILSLSSDALDTVIFYGEDIADLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + + ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTAEEDQFEAMVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455 >gi|33593958|ref|NP_881602.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella pertussis Tohama I] gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella pertussis Tohama I] gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS] Length = 945 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 116/437 (26%), Positives = 191/437 (43%), Gaps = 21/437 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I E F A+ G ++DGHD++ A GA VV + +++P + Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA----DVALPQLVLG 565 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNH 146 D L AL ++ A R ++A+TGS GKTTTKEM++ L+ + G++NN Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ +FELGM+H GEI L + P +A++T H +E + Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A + L + G D+ + + G + + FG D + Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDK---LAGARRVLRFGLQPGLDVYAERVVTQ 742 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + V S + G H +N L + A + T I AL+ F GR Sbjct: 743 AHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + + + LID++YNANP S +AAI VL+++ R VLGDM E+G+ Sbjct: 803 MQHRQMSDG---TVLIDDTYNANPDSARAAIDVLARLPA----PRALVLGDMGEVGDNGP 855 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H ++ + + I + G A + ++D + ++ L Sbjct: 856 AMHREVGDYAREHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS- 911 Query: 447 VVVKSSNSCGFYRLINL 463 +++K S R++ Sbjct: 912 ILIKGSRFMRMERVVTA 928 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 164/479 (34%), Gaps = 49/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L ++G + +DSR I P + F A G DG F+ A+ +GA Sbjct: 15 LDQALAWLRGCVAPTAD------LRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGAS 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ T+ A + V + L LA R +++AITG+ GKT+ + Sbjct: 69 AILYETEG-APVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQ 127 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGM 169 L L+ + K IG+ + +L D L Sbjct: 128 WLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEA 187 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S +G + +R +A T + HL ++ AKA +F+ + + D Sbjct: 188 SSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAAVVNADDP 247 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + LL + AL + AD R + + + L +++V +G Sbjct: 248 AGERLLASLPAALKT---GYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDE 344 H N+L+ G +S L + + L+ P +GR + L+ Sbjct: 305 QHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVV 364 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ A++ L ++ GR + V G GE ++ + V Sbjct: 365 DYAHTPDALARALTALRPVAQARGGRLVCVFG---CGGERDPGKRPEMGRIAVER-ADRV 420 Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KS 451 ++ + + + +P + + + S+ DV+++ K Sbjct: 421 VVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAA-PDDVILLAGKG 478 >gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 491 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 149/501 (29%), Positives = 216/501 (43%), Gaps = 43/501 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP--QGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ QA+QG I V DSR I F AI G DGHD++ Sbjct: 1 MMPM-SLEEIAQAVQGRLIAGTAAIDTPVATSTFTDSRQIVEGSVFVAIAGERVDGHDYV 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIA 112 +GA +V+ ++ + +P V+D + AL LA R + T+I Sbjct: 60 SKVGAQGAVAAIVDHEIDGA----GVPQIVVEDTVLALGALAKHNIERRRALETPFTVIG 115 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+++ L+ I T A +GS+NN IG+PLT ++ + F + E+G +H+ Sbjct: 116 ITGSVGKTTTKDLMKALLAHIGPTIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIRGLVPGGLSVLNANDEHV 235 Query: 233 ELLKAKSHALGIKTIYSFGKSKNAD------FQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + A + + FG +N D Q + S++ G+ EV Sbjct: 236 AAMSAIAPGD----VMWFGLPQNNDGKPAISAQHVHCDELDHPSFILDNGDGEHAEVTLG 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDES 345 G H N L + L + ALS Q FTLID+S Sbjct: 292 ICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISPHRMAVSIVNKQETSFTLIDDS 351 Query: 346 YNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +NANP SMKA + L + E + AVLG M E+G + H+ + + Sbjct: 352 FNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHVGIGRYALEGGVDA 411 Query: 404 VWLSGFHVLALKDALP-----------RSIHVHYSETMDGLFLFIQSSL--VDGDVVVVK 450 + G A DAL + HV + +D + G VV++K Sbjct: 412 LLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTRLAVEHPGAVVLLK 471 Query: 451 SSNSCGFYRLINLLLEEFPAI 471 S++ G L E + A+ Sbjct: 472 GSHASGLS----ALAERWQAL 488 >gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 468 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 124/460 (26%), Positives = 207/460 (45%), Gaps = 25/460 (5%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + I+ D+R++ P E F A++G ++DGH+F+ A++KGA V+V + + Sbjct: 22 FHTPEKTLITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNS 81 Query: 79 G----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 S +IP+ V++ L A K+A R R +I++TGSVGKTTTKE++ L++ Sbjct: 82 EIQQLSNNIPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQG 141 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 K +YNN IGV TL ++ + ++ + E+ M GEI LTH+ P I +IT + Sbjct: 142 KVMKTEANYNNEIGVAKTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLITNVGT 201 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AH+ +E IA AK E+ + + LNYD+ AK G++ Sbjct: 202 AHIGRLGSVEAIAEAKCELLREMSDSSIAILNYDNQRLIETAAKVW---------SGETF 252 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 + + S + L L ++ T Sbjct: 253 TYGLEGGNLQGKLIDSQTINVEGVDLPLPLPGSHNASNYLAALAVLKVLHGKNIPAKTLF 312 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 ++L+ + G R R + ++DESYNA SM AA+++L++ IAV Sbjct: 313 QSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPGKR---HIAV 369 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETMDG 432 LG M E+G S FH + V+ NI +++ A+ S+ E + Sbjct: 370 LGTMKELGNKSILFHQQVGNVVKNLNIDGLFILADFEEAKAMATGAA-SLQFIKVENITA 428 Query: 433 ------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L ++Q L GD V+ K+S+S +++ LL+ Sbjct: 429 DNAHHNLAKYLQEFLQPGDRVLFKASHSVELNKVVELLIN 468 >gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] Length = 465 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 202/469 (43%), Gaps = 24/469 (5%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L +A QG + G +PQG + I DSR + F A+KG +D HDF+ + Sbjct: 14 WTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 G + +V + + I V D AL L R ++ +IA+TGS GKTTT Sbjct: 74 GCQIAIVEHPI-----DVDIAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + ++LV Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +PH+A I I AHL F G E I AK+EI+ + G + D F ++ + Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGVAIVPAADDFTADIRN---SA 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG+ D + + + + V G H QN Sbjct: 246 QAHSNLSFGQ--GGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGEHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + ++D ++ L +GR + ID++YNANP SM +Q Sbjct: 304 ALAIGIELDDIVEGLEQAQGAKGRLNFIQ----HQNHLFIDDTYNANPTSM----RAAAQ 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +G ++ V+GD+ E+G+ S H DL L+ + + + G + A S Sbjct: 356 VLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVVVGEYANAALQGSSHSE 415 Query: 423 HVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 +H T F+ + + K S L+ L+E+ Sbjct: 416 KLHAFATQAEALPFLIQLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 464 >gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hyphomonas neptunium ATCC 15444] gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hyphomonas neptunium ATCC 15444] Length = 478 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 254/470 (54%), Gaps = 17/470 (3%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MN PLWT D+ A G V G ISID+R++ + F A+K DGHDF+ Sbjct: 1 MNRPLWTSSDMELATGGD---ASAAFEVTGSISIDTRTLQKGDLFVALK-DQRDGHDFVE 56 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A + GA +V+ M PV V+DVL AL ++ +AAR+R A A+TGS G Sbjct: 57 AAFKAGAAGALVSRPMP------GGPVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+ KEML + + + S+NNH GVPLTLARMP + +FE+GM+ GEI Sbjct: 111 KTSVKEMLAQIYRAHGPAHWNVKSFNNHWGVPLTLARMPEETQRAVFEIGMNTPGEIAPR 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +VRPH ++T IA AHL +E IA KA IF GLE GTI L DD+F + L + Sbjct: 171 SQMVRPHTGIVTCIAAAHLQGLGSVEGIAEEKANIFAGLESGGTIILPADDTFLDYLSER 230 Query: 239 SHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + +FG S +A ++ ++ S +EV + G+ + V + +G H AQN+ Sbjct: 231 ARSFCPTGNVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVA 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAA 356 L S + V +ALS + P GRG + G TLID++YNANPASM Sbjct: 291 AALLAASQASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASM--- 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L ++ RR+A LGDM E+G+ S + H LA + + V+L G + L + Sbjct: 348 RAALKGLAQRAGTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFLVGAEMQHLSE 407 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ALPR + + T D L+ +Q +L GDV+++K SN+ G R+ + L + Sbjct: 408 ALPRDLQQVSAPTADELWNQLQKALRAGDVLLIKGSNASGMGRIADRLRQ 457 >gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] Length = 462 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 202/464 (43%), Gaps = 13/464 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ + G + + + DSR + P F ++G ++DGH F+ A +GA Sbjct: 5 LSELINLWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAK 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VV+ D I ++ + VDD L A +LA+ R R ++A+TGSVGKTTT+E++ Sbjct: 65 AAVVSKDSTVQIPE-NLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTTRELI 123 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 T L+++ + + NN IGVP T+ + I E+ M LGEIR L+ P I Sbjct: 124 TACLTTLGAITSTSDNNNNDIGVPQTILQADFSDAALILEMAMRGLGEIRRLSCCSNPDI 183 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ + IA AK EI L +GT+ + D + + ++ I Sbjct: 184 AVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGTVIIPAGDPLLDSILSEKWPGRIIR 243 Query: 247 I--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G+ + ++K + M + L I Sbjct: 244 VGLMPLGEEHTSASYIKKNAVDLLGVLDLNNNSLSVDKEALTLPLEGMHNAVNFMLAIAV 303 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + GR + G T++DESYN++P S+KA++ +L Sbjct: 304 ALELGISLSNMNNLHVKTPCGRNSCF----TYGNLTVLDESYNSSPESVKASLDLL---- 355 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSI 422 GR AVLG M E+G+ S FH + + ++ V + G A+ + Sbjct: 356 VTKPGRHFAVLGTMFELGDESIKFHSLIMQHAVDLSLDGVIVVSDGEEAEAMVAVGKQLP 415 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++QS L GD +++K+S G +L+ L Sbjct: 416 NFSIFSQPEEALPYLQSILKPGDNLLLKASRKIGLEKLLPFLEN 459 >gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 471 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 120/473 (25%), Positives = 187/473 (39%), Gaps = 18/473 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + G G + + + DSR + E F A+ G DGH +I A+Q Sbjct: 1 MLDSAKIAVLLNGRLYG-SEKAVFHRCTADSRQVKGGEMFIALAGEKTDGHKYIARALQS 59 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA +V+ + G +P + V+D L L +LA A +I +TGS GK Sbjct: 60 GAAIVLAEEKRLRREGVPVLPEKSSIIAVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M+ L + + + G+ N IG+P+T+ P D + + E+GM LG+I+ L Sbjct: 120 TTTKDMVAAVLGTKFRVHKNAGNLNTEIGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLC 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P AVIT I HL E IA AK EI E L + G LN +D KA S Sbjct: 180 EISCPCAAVITNIGATHLELLGSRENIARAKWEIVESLPEEGIAILNTEDKISME-KAAS 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + GK D L + E V + N+L Sbjct: 239 YHGKTLFYGIEGKFGRPD--LWAEEIIPSGDTGTTFRARYKKENVLIRLPLPGKHNVLDA 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + + R +I++ YNANPAS+ + Sbjct: 297 LAALGAGLLNGVNLESGSQALEGLQISAMRLEILPGCHQSIIINDVYNANPASV---KAS 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + G + +AVLG+M E+G SQS H ++ + + + G + Sbjct: 354 LAVLKERGGAKTVAVLGEMYELGAASQSGHREVGVEAAGLGVLELVTVGKLAEEIAAGAL 413 Query: 420 RSI----HVHYSETMDGLF---LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ +H E I L G V++K S ++ N L Sbjct: 414 QNGFLPSRIHICEDCAEAVTATKKIIDLLGAGTWVLIKGSRGMHMEKISNELK 466 >gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 3008A-a] gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 3008A-a] Length = 455 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT I AH+ F ++IA AK EI + L++ G N D+ L + Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + + + ++ IG H N L + + Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ F P R + + L + ++ + YN+NP + KA ++ SQ+ Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421 GRRIAVLGDM E+G S H LAEVL+ I ++L G + L +AL + Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLEHLL 455 >gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planococcus donghaensis MPA1U2] gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planococcus donghaensis MPA1U2] Length = 452 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 118/464 (25%), Positives = 203/464 (43%), Gaps = 19/464 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + + + + + + G+SI++R++ P + F +G + +GH ++ A++ GA Sbjct: 5 IEQVAKWLDIKT--NLKGIDITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D +P+ V+D AL ++A A R A +I ITGS GKT+TK+++ Sbjct: 63 ASLWQRD--EPGAPEDLPLLFVEDCEVALQEMARAYRDELSAMVIGITGSNGKTSTKDLV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L K G++NN +G+PLT+ + D + E+GMS G+I FL+ L RP Sbjct: 121 ASVLKPYFKVQKTPGNFNNQLGLPLTILSLEEDTKVAVLEMGMSGRGQIEFLSELARPDY 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT I AHL + E IA AK EI GL++ G +F + D+ + Sbjct: 181 AIITNIGEAHLQDLGSREAIAEAKFEITAGLQQHGKLFYDGDEPLLQPFMEAFPQG---- 236 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 SFG N + + K S + +G H +N L + + Sbjct: 237 -VSFGFDDNNELTVTDIKATESGSS-FMVSGIIDAAFTIPVLGEHQVKNTLAAILVALEA 294 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + K+L R + I+++YNA P+SM AA++ + + + Sbjct: 295 GLSEEQIRKSLKDAAL---TDMRMQMIQADNGAIFINDAYNAAPSSMNAALNFIRETTMK 351 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 + VLGDM E+G+ QS+H L++ +S + V L G + L D L + Sbjct: 352 DKKW--VVLGDMLELGDDEQSYHEALSKCISDNLV-GVCLYGPRMKWLYDKLQPTYGGRL 408 Query: 427 SETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++ V++VK S +I + E Sbjct: 409 LWSEADYGPIIDLLKKYTNKDSVILVKGSRGMALENVIEPFVNE 452 >gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 445 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 119/471 (25%), Positives = 194/471 (41%), Gaps = 30/471 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T + +Q G V I DSR + P F A++G +DGH+FI A+ Sbjct: 1 MLTLRTVADLLQTPLQGDPHLLGLPVQAICTDSRQLQPGSVFVALRGERFDGHNFIPQAL 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA V+ + P F V D L A ++A R + +++AITGS GKTT Sbjct: 61 ARGAVAVISQRPVAG-------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAGKTT 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML ALS ++NN IGV TL +M + F + E+ M GEIR L + Sbjct: 114 TKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPEHQFVVLEMAMRGPGEIRRLAQM 173 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P A+IT I AH+ IA+AK E+ + G LN +D A + Sbjct: 174 AQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQ-ELGQGVALLNGEDPLLLSTAASLWS 232 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T ++ + E + V L G+ + G Sbjct: 233 GQTLTYGLDQGDLRGEWDPQAQTVTVEGLTLPVPLPGRHHALNWM--------------G 278 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +++ L + + R R G + DE+YNA+P +M I+ L Sbjct: 279 VLAALRSLGLDWERLREPIALPTPLEGRNRHLKLAGDVEIWDETYNASPEAM---IAALH 335 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419 ++ RR A+LG M E+GE + + ++ + + + L + L D Sbjct: 336 LLAQTPGKRRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLDPEGEMQPLLDQ-K 394 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + E + L + + GD ++ K++ + R+++ L+E+ A Sbjct: 395 PAAQTERCEEVSELLEILLHHVQAGDRLLFKAARAVELERVLHRFLQEWQA 445 >gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2150] gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2150] Length = 474 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 181/476 (38%), Positives = 250/476 (52%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT D + A G G+SID+R+IA + F A+K DGH+F+ A Sbjct: 1 MNALWTSQDAIAATGGACTV---DWVAEGVSIDTRTIAKGDLFVALK-DQRDGHEFVAQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ + + P+ V +VL AL L AAR R+ A ++A+TGSVGKT Sbjct: 57 LAAGASAALVDH--IPDNVAPDAPLLIVPNVLTALEALGTAARARTSAKVVAVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML + LS+ K +A SYNNH GVPLTLARMP D DF + E+GM+H GEI L Sbjct: 115 STKEMLRVMLSTQGKCHAAEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPLAK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P I +ITT+A HL+ F I+ IA K+ +F GL + G +N D ++L + Sbjct: 175 LTQPDIGLITTVAAVHLAAFDNIQGIAVEKSALFSGLTENGVAIVNGDLETSDVL---MN 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A KTI FG +F L +Q+ + Q + G H A N L L Sbjct: 232 AAQGKTILRFGSDAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF----TLIDESYNANPASMKAA 356 VS L AD+ A L+ + P GRG++ L++G TLID++YNANP S+ AA Sbjct: 292 ASVSALGADMGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVAAA 351 Query: 357 IS------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 I + I +GRRIAVLGDM E+G H LAE+ + I V G Sbjct: 352 IEILSVSNPIDNIGRIRKGRRIAVLGDMLELGTEEHQLHAGLAELKEIAKIDLVHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +L A+P S H+ ET L ++S L GDVV+VK S +++ + Sbjct: 412 MKSLWSAVPNSKRGHWFETSSKLAELMKSQLDAGDVVLVKGSLGAKMAVIVDAIQN 467 >gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP19-BS75] gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CGSP14] gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP-BS293] gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP14-BS292] gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS397] gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS457] gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS458] gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP19-BS75] gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CGSP14] gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae INV200] gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP14-BS292] gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP-BS293] gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS458] gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS457] gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS397] Length = 457 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G ++ L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENEAK 457 >gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] Length = 452 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 208/471 (44%), Gaps = 23/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + +A+ IG +N +S D+R+I F A+ G +D H F A Sbjct: 1 MISLM-LSQIAEALDAELIGN--DRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAG ++V+ + S +P V D AL +L +AITGS GKT Sbjct: 58 VDSGAGALLVSKPV-----SGDVPQLVVKDTKLALGQLGALVHQTCLTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ + + G++NN IGVPLTL R + D + ELG +H+GEI + T Sbjct: 113 TVKEMIASIMEQKGQVLFTAGNFNNEIGVPLTLLRSTPEDDVAVIELGANHIGEIAYTTR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + + Sbjct: 173 LVQPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLKAGSVAIVNLDSNGGDYWQE-VL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + +S S ++ ++ ++V IG H N L Sbjct: 232 ADKLVKTFSLTDSSADFTASDISLNEIGEASFVLKTPQGEIKVTLGIIGQHNVANALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L A ++ L+ + +GR LID+SYNA+ +MKAA +L Sbjct: 292 ALALELGASLEMIQSGLASLNKVKGR---VELIELNQQIKLIDDSYNASVPAMKAAADLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R +LG+M E+G+ S + H + + + + +V G A+ + Sbjct: 349 AGFK----GVRWLILGNMAELGDESLALHRQVGQHAAPFKFEYVLTFGADAKAISE---- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEEF 468 + E + FI+ + ++VK +NS G ++ + E + Sbjct: 401 ECGGRHFEDHQSMIDFIKQQIEQHLEPQTLLVKGANSAGMSKVAAAVKEMY 451 >gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] Length = 453 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 138/472 (29%), Positives = 204/472 (43%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L Q QG IG +S D+R I Q F A+ G +D HDF A Sbjct: 1 MIE-TSLSHLAQLTQGQLIGD--DATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V + L + V D AL +L R + +AITGS GKT Sbjct: 58 VDAGAVALLVERAL-----DLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IG PLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP +A++ +A AHL F I+ + AK EI++GL G +N D E + Sbjct: 173 LVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW-TQVL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T +S + + ++ + + + + IG H N + Sbjct: 232 ADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANAIAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I A + L P +GR + + N LID+SYNA+ +MKAA+ +L Sbjct: 292 IIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIK---LIDDSYNASVPAMKAAVDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+R VLG M E+G S + H + E + N HV G + Sbjct: 349 GSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQL--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468 + L +I+ +L + V+VK +NS G ++ L E + Sbjct: 402 -CGGKHFSDHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452 >gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] Length = 456 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 203/466 (43%), Gaps = 20/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W ++ + IG + + DSR+IA + F A+ GP +DGHD++ Sbjct: 1 MLKPWLLSEVAANLNARVIG--ADVAFSAVGTDSRTIAADQLFVALNGPRFDGHDYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R K ++ A+TGS GKT Sbjct: 59 AAKGAVAALVEREVA----NAPLPQLLVADTRVALGQLGALNRQAFKGSLAAVTGSSGKT 114 Query: 121 TTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 + KEML L + A G+ NN +G PLTL + + G+ ELG +H+GEI + Sbjct: 115 SVKEMLASILRAGLNGAVLATRGNLNNDLGAPLTLLELVPEHRAGVIELGANHVGEIAYT 174 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L +P +A+IT AH+ F G E+I AK EI EGL G LN DD F + + Sbjct: 175 VSLTQPQVAIITNAGNAHVGEFGGPEKIVEAKGEILEGLPSDGVAVLNLDDKAFVTWQRR 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + + + ++ S + + +G H N L Sbjct: 235 AAGRKVLSFALRDTRADFHGSDLA-RDERGCQGFTLRSPIGSARIQLNLLGEHNVANALA 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + ++ L P +GR L +ID+SYNANP SM AA+ Sbjct: 294 ACAAAHALGMPLVAMVQGLESLQPVKGRAVAQ---LAPNGVRVIDDSYNANPVSMCAAVD 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ S GR + VLGDM E+GE ++ H D+ + + ++ G + + Sbjct: 351 ILAGFS----GRTVLVLGDMGELGEWAEQGHRDVGRHAA-GKVDALYAVGPLMRFAVEEF 405 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L +++ G +++K S S +++ L Sbjct: 406 --GSKGRHFVDQAELIEALRAE-QAGSTLLIKGSRSAAMDKVVAAL 448 >gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 461 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 205/472 (43%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + S+ + +N I DSR+I + F ++G DGHDFI A + Sbjct: 3 LTLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + P V++ L A KLA + + +IA+TGS GKT+TK Sbjct: 62 GAVATFSERAIS------GRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I+ L+ + R Sbjct: 116 DMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHIAV+T I AHL+ F E+IA K +I +G++ G + D L + Sbjct: 176 PHIAVLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQMVIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + V G + A N ++ + Sbjct: 236 FGDHQELVVEDIKEC----------KDSLTFRTNVLPRPVTIPLTGKYNATNAMIAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + I+AL + R L+ + YNANP +M+ + + I Sbjct: 286 KLLAVPDEDIIEAL---EAVKLTRHRTEWLKAANGADLLADVYNANPTAMRLILETFAAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + G++IAVL DM E+G S + H + L I + G + AL + Sbjct: 343 PANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRIDQLVFYGDDIQALAKLASQDYP 402 Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S V + + + + ++ + L D +++K S+S +++ L Sbjct: 403 SGRVSFFKKNNQEDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRLTA 454 >gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 456 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 207/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + +G +G+S DSR IAP + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELVIHLDARLVGG--DCSFHGVSTDSRGIAPGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + S+P V D AL +L R + A+TGS GK Sbjct: 59 AGKGAVGALVEHEVEGA----SLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAMTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + D + ELG S +GEI F Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHDAAVIELGASRVGEIAFTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G + I AK EI EGL+ TGT LN DD F + + ++ Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDRIVEAKGEILEGLDATGTAVLNLDDKAFPIWQLRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + T + AD ++ + + V + + Sbjct: 235 GERKVMTFAL--NNPAADLHATDLRRDARGCPAFMLNSPLGAAPVQLNLLGTHNVANALA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I A + A N +ID++YNANPAS+ AA+ + Sbjct: 293 AAAAACALGVSLEGIAAGLNNVQPVKGRAVAQIASNGV--RVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ S GR + VLGD+ E+G+ ++ H ++ + +S ++ G + A Sbjct: 351 LTGFS----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H H+ + + L + + +++K S S ++ L Sbjct: 405 -GEHAHHFASQEELIAALGAEQNPDTTLLIKGSRSAAMENVVAAL 448 >gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] Length = 463 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 165/466 (35%), Positives = 228/466 (48%), Gaps = 15/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT ++ +A G V+G++ DSR + + F A+KG DGH F+ A Sbjct: 1 MSDLWTSAEIAEATGG---AASAPFAVSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++ P V D AL L +A+R R +I +TGSVGKT Sbjct: 58 FAQGAAGAIVS-------DAVDHPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKT 110 Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TKE L +AL + + + SYNNH+GVPL+LARMP D +GIFE+GM+H GE+ L Sbjct: 111 GTKEALYLALDRAAPGQAHRSVKSYNNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSAL 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 TH VRPH A++T IAPAH+ F +IA AKAEIFEGLE + YD L K Sbjct: 171 THQVRPHAAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAAAIIPYDSPHVATLYNK 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + + L + + + +L + G H N L Sbjct: 231 AERHAARILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V + D+ A AL+ GRG+R + G LIDESYNANP SM + Sbjct: 291 VLAAVEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSM---AA 347 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L Q+ RRIAVLG M E+G S H LA+ L+ I L G + L DAL Sbjct: 348 TLKQLGREHADRRIAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAEMAPLADAL 407 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++ + I+ + GD ++VK SN G RL+ L Sbjct: 408 EGTMAYAHVPDAASAIPLIKKEMRAGDAILVKGSNGIGLSRLVAAL 453 >gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] Length = 456 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 139/466 (29%), Positives = 213/466 (45%), Gaps = 22/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN W + QA+QG IG ++G+S D+R+I + F A+ G ++D HDF+ A Sbjct: 1 MN--WLLSQVAQAVQGRLIG--ADVSIDGVSTDTRAITEGQLFIALAGENFDAHDFLAPA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V S +P VDD AL +LA A R + +IA+TGS GKT Sbjct: 57 IAAGATALMV---ADESKVPTGVPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKT 113 Query: 121 TTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 TTKEM+ L + G+ NN IG+PLTL + + E+GM+H GEI +L Sbjct: 114 TTKEMVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +A+IT AHL ++E+A K IF GL G +N DD++ L + Sbjct: 174 APIGAPTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADDAYAGLWR-- 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G + + +FG AD K +Q + +E+ ++ G H A+N + Sbjct: 232 -GMAGGRPVRTFGIDNAAD-VSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVA 289 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + I L F +GR + + ++D++YNANP S++A I Sbjct: 290 AAAACLAAGIPMVAVIAGLEAFSGVKGR---LQRRTGKQGAEILDDTYNANPDSVRAGID 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ GR++ VLGDM E+GE S +H ++ I ++ G Sbjct: 347 VLAATI----GRKLLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLFALGEAAQQAVRNF 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 HY +D L + L V+VK S R+ + L Sbjct: 403 GEGAK-HYC-NVDKLIAAVDKELGPETTVLVKGSRFMKMERVADAL 446 >gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia phymatum STM815] gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia phymatum STM815] Length = 470 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 118/473 (24%), Positives = 195/473 (41%), Gaps = 19/473 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T + I G ++ +S DSR+ P + F A+KG +D HDF+ Sbjct: 2 MFTLREAAAVIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAH 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 V+ + + +P V D AL LA R R ++A+TGS GKTT Sbjct: 62 NVSAVLATR----TPDNFEVPALRVTGDTRTALGALANGWRQRFSLPLVAVTGSNGKTTV 117 Query: 123 KEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 KEM++ ++ + G++NN +G+PLTL R+ + ELGM+H GE L Sbjct: 118 KEMISSIFAAAVGEASRLATAGNFNNDVGLPLTLFRLNETHKLAVVELGMNHPGETALLG 177 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P +AV+ H + +E +A A + L+ G +D++ + + Sbjct: 178 KIAEPTVAVVNNAQREHQEFMATVEAVALEHAAVIHALKPEGVAVFPANDAYAGIWR--- 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A I F + K E S + + ++V +G H A N L Sbjct: 235 VAATGNRIIDFALNTAEHTTEAAVKGSLEGSELSIDTAEGHVDVTLQVLGAHNAHNALAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAIS 358 +D + L F +GR + R L T+ID++YNANP SM AAI Sbjct: 295 TAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNANPDSMLAAID 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ R+ V+GDM E+G+ FH ++ I ++ G A Sbjct: 355 VLA----ARPSPRVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALGEASRDACAAY 410 Query: 419 PRSIHVHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 H+ + ++ L ++ + +VK S R+++ + PA Sbjct: 411 --GDEAHHCDDVEALVAHLKQAAYGAAATYLVKGSRFMKMERVVDAVTSPQPA 461 >gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 453 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 204/473 (43%), Gaps = 24/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L Q QG IG +S D+R I Q F A+ G +D HDF A Sbjct: 1 MIE-TSLSHLAQLTQGQLIGD--DATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V + L + V D AL +L R + +AITGS GKT Sbjct: 58 VDAGAVALLVERAL-----DLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IG PLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP +A++ +A AHL F I+ + AK EI++GL G +N D E + Sbjct: 173 LVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW-TQVL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T +S + + ++ + + + V IG H N + Sbjct: 232 ADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPVSLGIIGQHNVANAIAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I A + L P +GR + + N LID+SYNA+ +MKAA+ +L Sbjct: 292 IIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIK---LIDDSYNASVPAMKAAVDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+R VLG M E+G S + H + E + N HV G + Sbjct: 349 GSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQL--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEFP 469 + L +I+ +L + V+VK +NS G ++ L E + Sbjct: 402 -CGGKHFSNHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENYQ 453 >gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 464 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQTFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +++ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIKINLPYLGAHNISN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR ID++YNAN SMK+ Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL RI +GDM E+G+ S++ H +A+ + N+ V G + Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] Length = 454 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + V GIS D+R+I F A++G ++DG ++I A +KGA Sbjct: 5 NLKTITELTNTIINEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VVN D PV VD+ + LA +IAITGS GKTTTK++ Sbjct: 65 SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L K +YNN IG+ T+ + D + + E+G + GEI LT++ P Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLTNIAHPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +HL N E IA AK EI EGL++ G LN DD +K + + Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPVLREVKQEYKLP--E 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 SFG ++D+++ K S +G+H N M++ + + Sbjct: 240 KTISFGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D K L R + F ++++SY +NP S+ + + + Sbjct: 296 MGLDYSDVAKGLKKIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 HG R+IAVLGDM E+G+ + H ++ + ++ I +V +G + + Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y ET + L +Q +VD +++VK+S++ F +L+ + E Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLILVKASHAMQFDKLVEQIKE 453 >gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] Length = 464 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L Q + +G + V IS D+R + FFA+KG +D HD++ A Sbjct: 1 MIKQTT-QQLAQTLNAKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +++G +VV ++ ++++P V+D AL +LA + +A+TGS GKT Sbjct: 59 IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVPLTL R+ + F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKAGGKAIVNLAHYYPEWQK 233 Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 Y+ K ADF + S + +E+ +G H N Sbjct: 234 EIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR N ID+SYNAN SMK+ Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL Q RI V+GDM E+G+ S + H ++A+ + + V G + Sbjct: 351 AVSVLKQYPA----FRIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ + + +V++ K S S +I L Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEDVIASL 456 >gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodospirillum rubrum ATCC 11170] gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodospirillum rubrum ATCC 11170] Length = 488 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 166/443 (37%), Positives = 232/443 (52%), Gaps = 4/443 (0%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 G+ IDSR++ + F A+ G DGH + A+ GA +V+ Sbjct: 34 WTATGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSRIPAGIATD---R 90 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V+D L L LA A+R R ++ +TGS+GKT TKEMLT AL + +A G+ N Sbjct: 91 LLVVEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLN 150 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NH G+PLTLARMP D D + ELGM+H GE+ L L RPH+A+IT +A HL F +E Sbjct: 151 NHFGLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVE 210 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 IA AKAEI EG+E GT+ LN D+ FFE L+ + A GI SFG AD ++ Sbjct: 211 AIADAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCA 270 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + + + + G H A N L L +V L D+ +A L+ P Sbjct: 271 VDANGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPR 330 Query: 325 GR-GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR ++ G +ID++YNA+P S+ AA++ LS P GRRIAVLGDM E+G Sbjct: 331 GRGRRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGP 390 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H DLA++ I V+ +G + L DALP S ++ D L + ++L Sbjct: 391 QAAKLHADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLVLAALRP 450 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 GDVV+VK S R + LL Sbjct: 451 GDVVMVKGSKGSLVSRTVTALLA 473 >gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 447 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 191/469 (40%), Gaps = 29/469 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T ++ Q V + DSR + F + G DGH FI A+ Sbjct: 1 MFTVKEVAQLFGLEV---EDSRIVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIAS 56 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + I V V D L A+ KLA R ++AITGS GKTTTK Sbjct: 57 GAIATFWS----VQDQPEDITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTK 112 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ LS +TY G+YNN IG+P T+ MP D + E+GM H G++ L+ + R Sbjct: 113 DLTASVLSQAFRTYKTQGNYNNEIGLPYTILHMPKDTKVVVLEMGMDHAGDLTTLSTIAR 172 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA IT I AH+ N +IA K EI L G + + D+ L Sbjct: 173 PDIAAITMIGEAHIENLGSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGMTQQV 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + G D ++ +EQ+ V+ Q + N+ L Sbjct: 233 VTFGIDAG-----DVAAHILEEHAEQTVFSVKEQDYRIP-------LLGTYNVKNALIAY 280 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 SI T + + + R + + L+ + YNANP +M + ++ Sbjct: 281 SIGEKFGVTPEQIANGLKNVQVTKNRTQWLEMENGTRLLSDVYNANPTAMGLVLDSFGKL 340 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422 GRR AVL DM E+G S H +A+ + Y ++L G + L L Sbjct: 341 PVQ--GRRFAVLADMLELGPESSVMHAAMADHVQNY--DGLFLVGEQMDYLAKELAARDS 396 Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + + L ++ L D++++K SN ++++ L E Sbjct: 397 DVPLELYDANELAALIEDLKQLLQPADMLLLKGSNGMKLNQVVDALTSE 445 >gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] Length = 489 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 140/491 (28%), Positives = 205/491 (41%), Gaps = 34/491 (6%) Query: 1 MNPLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ + ++ QA+ G + ++ DSR I P F AI G DGHDF Sbjct: 1 MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAF-TDSRQIVPGSVFVAIAGERVDGHDF 58 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111 + +GA +V+ ++ + +P V++ + AL LA R S T+I Sbjct: 59 VPKVGAQGAVAALVDHEIAGA----QVPQIVVENTVKALGALAKHNIERRRALESPFTVI 114 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK++L LS + T A +GS+NN IG+PLT ++ F + E+G +H Sbjct: 115 GITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVVEMGANH 174 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 175 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEH 234 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + A + A + + D S++ G+ V G Sbjct: 235 VAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLGICG 294 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNA 348 H N L + L +D LS FTLID+S+NA Sbjct: 295 QHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDSFNA 354 Query: 349 NPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SMKA + + RIAVLG M E+G H D+ + Sbjct: 355 NPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDVGRYAVEGGADALVT 414 Query: 407 SG----FHVLALKDALPRSIH--------VHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452 G + AL +A+ + V ++ + + +G VV++K S Sbjct: 415 VGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMVTRLATDHEGTVVLLKGS 474 Query: 453 NSCGFYRLINL 463 ++ G L Sbjct: 475 HASGLSALAER 485 >gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 456 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAHLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYTALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 464 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR ID++YNAN SMK+ Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL RI +GDM E+G+ S++ H +A+ + N+ V G + Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Shewanella amazonensis SB2B] gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella amazonensis SB2B] Length = 455 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 214/470 (45%), Gaps = 27/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L A G G V+ + DSR + F A+KG +DGH+F A Sbjct: 1 MIPL-SLTQLAAATHGRLCG--EDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA ++V ++ L++P V D A+ ++ R +A+TGS GKT Sbjct: 58 AAAGASALLVEREL-----PLALPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ LS G++NN IGVPLTL R+ ++G+FELG +H GEI + + Sbjct: 113 SVKEMVATVLSQHHSVLFTAGNFNNEIGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP ++++ + AHL F +A AK+EI+ L + G +N DD + E + K Sbjct: 173 LVRPSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNK-- 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 L K + +FG A+ R+ + + G + V G H N L T Sbjct: 231 -LKGKRVLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALAT 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 I L + L+ P +GR + G L+D+SYNANP S+ AAI Sbjct: 290 AAICIALGLPLQEIAAGLAKLAPVKGRMMPRQ----LGRLLLVDDSYNANPNSVGAAIDW 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +IS + VLGD+ E+G+ + H +L + + ++ G A Sbjct: 346 LKEISTNR----TLVLGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFG 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLLE 466 + E +D L + + + +GDV ++VK S S R++ L Sbjct: 402 SK----HFEELDALVSELINYINGVEGDVTLLVKGSRSAAMERVVEALTA 447 >gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 457 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 110/442 (24%), Positives = 188/442 (42%), Gaps = 14/442 (3%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G + ++ DSR + P F A G +DGHDF A+++GA VV+N + Sbjct: 17 GFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPVEGVPA 76 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++ D A+ + R + ++ +TGSVGKTTTK+M A++ T Sbjct: 77 ERAV---ISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGNTIKT 133 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199 G+ NN +G+P T+ R+ D ++ + E+GMSH GEI L RP + +IT I +H+ N Sbjct: 134 EGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDVGIITCIGVSHIGN 193 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 E I AK EI GL + + LN DD F L+ + ++ ++ +NAD Sbjct: 194 LGSQENICKAKLEICAGLAEGSPLVLNGDDPF---LRKAALPTHVRPVWFSLGDENADVC 250 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 +Q + + + V + + + A Sbjct: 251 ALDVRQEGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALAAYAAATRLGLAPEGVIAGLA 310 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + + ++ G +I++ YNANP SM + L+ + RR A+LGDM Sbjct: 311 D---FEQTGMRQKIVHAGSMDVIEDCYNANPDSM---KAALAMFKEYPCKRRFALLGDML 364 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFI 437 E+G +S H +L + ++ + G A + V ++E + Sbjct: 365 ELGGMSAPAHEELGRQAAEAGLTALVTYGPEAARTARAAKDAGLADVVHAEDYRQAADAL 424 Query: 438 QSSLVDGDVVVVKSSNSCGFYR 459 + + GD ++VK+S + Sbjct: 425 LARMAPGDALLVKASRGMALEK 446 >gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] Length = 464 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 127/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L Q ++G +G + IS D+R + FFA+KG +D HD++ A Sbjct: 1 MIKQTT-QQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +++G +VV ++ ++++P V+D AL +LA + +A+TGS GKT Sbjct: 59 IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVPLTL R+ + F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK 233 Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 Y+ K DF + + S + +E+ +G H N Sbjct: 234 EIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR N ID+SYNAN SMK+ Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL Q RI V GDM E+G+ S + H ++A+ + + V G + Sbjct: 351 AVSVLKQYPA----FRIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ + + +V++ K S S +I L Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASL 456 >gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Spirochaeta smaragdinae DSM 11293] gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Spirochaeta smaragdinae DSM 11293] Length = 478 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 119/481 (24%), Positives = 203/481 (42%), Gaps = 31/481 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++ + I + ++G++IDSR++ P F A++G DGH ++ A + Sbjct: 8 FSAREAAAIIGAAVFSPSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAAR 67 Query: 63 KGAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113 GA V+V+ + A + V V+D L AL +L+ R + IA+ Sbjct: 68 AGASAVLVDHEKSACVEGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAV 127 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTKE+L LS T G+ N+ IG+PL L + FG+FELG++ +G Sbjct: 128 TGSSGKTTTKELLGSVLSMKAPTVVNPGNLNSEIGLPLALFGVGPADHFGVFELGINRIG 187 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E+ L+ L P +IT I AH G E + K ++ ++ G +F DD + Sbjct: 188 EMELLSSLYHPQHLLITNIGTAHSGPLGGKEGVFREKTKVLAHMQGEGFVFYPEDDDRID 247 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 LK++ +L + + + + + + Sbjct: 248 ALKSRYPSLAFRPYGPATLTGLETVEDLGTEGWLLRYRGVSIHYPLLGQHNLQ------- 300 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 I V + ++ RC L +G +++D+ YNAN S Sbjct: 301 ---NGCGVIALAFELGVSPELIGAALSA---AAPVAGRCRLLRGAISVLDDCYNANLDSS 354 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410 + ++ + +GR++ V G M E+G S H + ++ + V+L G Sbjct: 355 ERVFEYIASLPW--DGRKVIVFGSMKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSE 412 Query: 411 -VLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + D S +H+SE D L + + + +GD+V++K S + G RLI LL E Sbjct: 413 SFREISDQGSMSQILHFSENQFDELSERLLAFVREGDLVLLKGSRTMGLERLIPLLQHEE 472 Query: 469 P 469 Sbjct: 473 K 473 >gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] Length = 473 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 124/476 (26%), Positives = 191/476 (40%), Gaps = 23/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + V G + IDSR + F A G DGHD+ Sbjct: 1 MIAL-SLAEIADIVGGQPHDMPDRSLTVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAR 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + + P VDDV+ AL LA A R ++A+TGS G Sbjct: 60 -------AAVEAGAVAVLAARPVGCPAIVVDDVVAALGALACAVVERLGTAVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + + E+G +G I +L Sbjct: 113 KTSTKDLIAQLLERKAPTVWTPGSLNNEIGLPLTALTATAETRHLVLEMGARGVGHIHYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L P I ++ + AHL F E IA AK E+ E L + G LN DD + A+ Sbjct: 173 AQLTPPTIGLVLNVGSAHLGEFGSREAIAQAKGELVEALPEDGVAVLNADDPLVRAMAAR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ +AD + + + V + Sbjct: 233 TQA----RVVLFGEAPDADVRGENVRLTDDGRPAFALHTPTGCSDVTLRLY-GEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SMKAA+ Sbjct: 288 LAAAAVAHELGMSVTEIAEALSVAGTLSRWRMEVTERPDGVTVVNDAYNANPESMKAALR 347 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L+ + + GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALAAMGKAARAEGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G ++ LLE Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVALALLE 463 >gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 521 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 142/529 (26%), Positives = 206/529 (38%), Gaps = 75/529 (14%) Query: 1 MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M PL + L Q + IG V + IDSR ++ F A+KG +DGHDF Sbjct: 1 MIPL-SLRQLAQVLNAELIGIEHASDHALVTQVVIDSRKLSTGCLFVALKGARFDGHDFA 59 Query: 58 LHAVQKGAGLVVVNTDMVASI--------------------------------------- 78 A+ GA ++VN + Sbjct: 60 EEAITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNA 119 Query: 79 ------------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 L IP V D AL +LA R + A ++A+TGS GKT+ KEM Sbjct: 120 TASKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMT 179 Query: 127 TIALSSIK-------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 L K G+ NN IGVPLTL R+ + DF + ELG +HLGEI + Sbjct: 180 AAILRQCKTPTKKNSHVLYTSGNQNNDIGVPLTLLRLTAEHDFVVIELGANHLGEIAYSA 239 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP ++ +A AHL F + +A AK EIF L G +N D + + Sbjct: 240 GLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWPHWQGML 299 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + F DF K S+ + + S+E+ +G H N L Sbjct: 300 SQQRVWRFA-FNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVANALAA 358 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + AD++ K L+ H GR L L+D+SYNAN SM AA + Sbjct: 359 AALAMSVGADLEAIAKGLAQSHATPGRLF---PILLAEGKLLLDDSYNANVGSMIAAAQL 415 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+++ G R+ +GDM E+GE + H + I V G L A Sbjct: 416 LAEMP----GYRVMAVGDMGELGETAVDCHRQVGSAARQAGIDKVLSVGTLSQQLSSA-- 469 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466 S + + L ++ L ++ ++K S S G ++ L E Sbjct: 470 -SGNGEHFHDQVVLTARLKQLLQAHPIITLLIKGSRSSGMENVVQALQE 517 >gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK405] Length = 456 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 124/470 (26%), Positives = 202/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSEHPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKEGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLDQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + A ++ + YNANP +M+ + S I Sbjct: 288 EGVSEAAIAQAFSKLELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREELTPADQILLKGSNSMNLAKLVEDLED 454 >gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 489 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 140/491 (28%), Positives = 205/491 (41%), Gaps = 34/491 (6%) Query: 1 MNPLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ + ++ QA+ G + ++ DSR I P F AI G DGHDF Sbjct: 1 MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAF-TDSRQIVPGSVFVAIAGERVDGHDF 58 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111 + +GA +V+ ++ + +P V++ + AL LA R S T+I Sbjct: 59 VPKVGAQGAVAALVDHEIAGA----QVPQIVVENTVKALGALAKHNIERRRALESPFTVI 114 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK++L LS + T A +GS+NN IG+PLT ++ F + E+G +H Sbjct: 115 GITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAEMGANH 174 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT LV P IAV+ + AHL F E IA AK+EI GL G LN +D Sbjct: 175 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEH 234 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + A + A + + D S++ G+ V G Sbjct: 235 VAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLGICG 294 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNA 348 H N L + L +D LS FTLID+S+NA Sbjct: 295 QHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDSFNA 354 Query: 349 NPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SMKA + + RIAVLG M E+G H D+ + Sbjct: 355 NPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDVGRYAVEGGADALVT 414 Query: 407 SG----FHVLALKDALPRSIH--------VHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452 G + AL +A+ + V ++ + + +G VV++K S Sbjct: 415 VGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMVTRLATDHEGTVVLLKGS 474 Query: 453 NSCGFYRLINL 463 ++ G L Sbjct: 475 HASGLSALAER 485 >gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis SK564] gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis SK564] Length = 457 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + I + DSR I ++ F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLANLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + + D L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAEGSLLLAPADPIVEAYL------PA 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ I Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKTNFLEQALDLPVTGKYNATNAMIASYIA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTENQDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENEDK 457 >gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] Length = 470 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 196/468 (41%), Gaps = 19/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +++ I G S+ +S DSRS P + F AIKG +D HDF+ Sbjct: 1 MT-MFSLRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ V+V + + S+P V D AL LA R + ++A+TGS GKT Sbjct: 60 AERNVAAVLVAR----TPENWSVPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHRLAVVELGMNHPGETEQ 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +AV+ H + +E +A A + L GT DD++ + + Sbjct: 176 LAKLAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPEGTAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + + + ++V +G H A N L Sbjct: 235 --VAATGNRIIDFALNNAERTTEAAVQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 +D + L F +GR + + AL T+ID++YNANP SM+AA Sbjct: 293 AATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ E R+ V+GDM E+G+ FH ++ + ++ G Sbjct: 353 IDVLA----SRESPRVLVMGDMGEVGDNGPVFHREIGAYAKERGVDALYAMGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 A H+ + L +Q + ++VK S R+++ Sbjct: 409 AYGAG--AHHVADVGALVAQLQQAGFGAAATLLVKGSRFMQMERVVDA 454 >gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70] gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016] gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae AP200] gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70] gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016] gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae AP200] Length = 457 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAYLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457 >gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum DSM 43827] gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum DSM 43827] Length = 490 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 125/502 (24%), Positives = 185/502 (36%), Gaps = 52/502 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDF--- 56 M L T ++ + + G G V G+ D+R + P F A+ G DGHDF Sbjct: 1 MITL-TLAEIAEIVGGRLHGTDGSPVVKAGVEFDTRKLLPGGLFLALPGERVDGHDFAAA 59 Query: 57 ----------------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-------VLG 93 + VA D VL Sbjct: 60 AVAAGAAGVLAGREVPAPSVIA----------PPVAPADEHEGAYVLSGDSDGSGAAVLA 109 Query: 94 ALNKLAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL KLA R T++ +TGS GKT+TK+++ LS T A GS+NN +G P Sbjct: 110 ALGKLARHVTDRLTAGGLTVVGVTGSSGKTSTKDLIAQVLSPTGATIAPPGSFNNELGHP 169 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R D + + EL G I L + P I + + AHL F E +A K Sbjct: 170 WTALRADEDTGYLVLELSARGPGHIADLCAVAPPRIGAVLNVGTAHLGEFGSREGVARTK 229 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E+ E L + G LN DD + ++ A + A + + + Sbjct: 230 GELVEALPEDGVAVLNADDPLVLAMAERTKAKVVLVGEHSRAQVRAVDIVLDEQARPGFT 289 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 S V G H N L + L A L P R Sbjct: 290 L---LTPHGSARVQLAVHGPHQVGNALTAAAVALELGATPQQVADRLGSAKPI--SAHRM 344 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPH--GEGRRIAVLGDMCEMGELSQSF 388 T+++++YNANP S+KAA+ L+ IS R AVLG M E+G S Sbjct: 345 EVVDRADGVTVVNDAYNANPESVKAALKSLATISRSTTPARRSWAVLGPMAELGADSVRA 404 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDG 444 H ++ + +++ + + G A+ + ++ + G Sbjct: 405 HDEIGRLAVRLDVNRLVVIGDDARAMHQGAHLEGSWGEESILVPDVAAAIELLRDEVRPG 464 Query: 445 DVVVVKSSNSCGFYRLINLLLE 466 DVV+VK+SNS G +R+ LLE Sbjct: 465 DVVLVKASNSYGLWRVAEALLE 486 >gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] Length = 450 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 210/469 (44%), Gaps = 24/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L ++ Q + ++ID+R + F A+KG +DGHDF + Sbjct: 1 MSTLLNAEYIISDTQ------RNNIEITEVTIDTRQVTGGCLFVALKGERFDGHDFAEN- 53 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ + P V D AL +LA R + A ++A+TGS GKT Sbjct: 54 ----AVAAGAGALLVSKRLLVGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 109 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K G++NN IGVPLTL R+ + DF + ELG +H+GEI + T Sbjct: 110 SVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ ++ AHL F + +A AK EIF GL GT +N D + + + H Sbjct: 170 LSRPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S ++ DF + + ++ + + + + G H N L Sbjct: 230 HKRVWR-FSSQAGEDIDFFASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIANALAAA 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + AD+ + L+ GR + A+ L+D+SYNAN SM AA VL Sbjct: 289 ALAMSVGADLAAVRQGLTQLQAVPGRLFPIQLAVG---KLLLDDSYNANVGSMTAAAQVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G+ + H + E + V G L DA Sbjct: 346 AEMP----GYRVMVVGDMAELGDTAIDCHRQVGEAAKHAGVDKVLSVGKLSQTLSDASSC 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L++ V++K S S ++ L E+ Sbjct: 402 G---EHFQDKDTLAARVSELLLEHPIITVLIKGSRSAAMENVVRALQEK 447 >gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM 10] gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis FV-1] gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis CO92] gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10] gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CO92] gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D106004] gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D182038] gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 458 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 212/472 (44%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + + L + I + + ++ID+R + F A+KG +DGHDF Sbjct: 1 MIKV-SLRFLASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFA 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ GAG ++V+ ++ + P V D AL + A R + A I+A+TGS Sbjct: 60 EDAIAAGAGALLVSKRLL-----VGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSS 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+ KEM L G++NN IGVPLTL R+ + DF + ELG +H+GEI + Sbjct: 115 GKTSVKEMAAAILRQCGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIELGANHVGEIAY 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 T L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + Sbjct: 175 TTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQE 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 H + +S +++ DF + + + + ++ + G H N L Sbjct: 235 TLHNKRVWR-FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + AD+ + L+ GR L+D+SYNAN SM AA Sbjct: 294 AAAALAMSVGADLAAVRQGLAQLQAVPGRLF---PVPLAEGQLLLDDSYNANVGSMIAAA 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+++ G R+ V+GDM E+GE + H + E L + V G L A Sbjct: 351 QVLAEMP----GYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVLSVGTLSQILSSA 406 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLEE 467 S + + + + L + + L V++K S S ++ L E+ Sbjct: 407 ---SGNGEHFQDQNTLSTRVNALLNEYPVITVLIKGSRSAAMENVVRALQEK 455 >gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ QA+ + I + DSR IA + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAVATLSEKEIA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGMAPGSLLLAPADPIVEAYL------PA 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457 >gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii] gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii] Length = 515 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 129/467 (27%), Positives = 209/467 (44%), Gaps = 15/467 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + QA+ G G I D+R I + F A+ G ++DG+ F+ A+ Sbjct: 49 IWDCQQIAQAVGGILAKQGSPG---SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G + + + V D L AL+KLAV AR R + ++ ITGS GKTTTK Sbjct: 106 GCAGAI----GRSMPRDWPVGFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTK 161 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 M+ +AL S+ + GS NNHIGVPLTL +P + E+GM+HLGEI L+ + + Sbjct: 162 AMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRICK 221 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + V+ + PAH+ N +E++A AK E+F + LN DD + Sbjct: 222 PSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAM----PVSP 277 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGI 302 I FG+S+ +D +L + S ++ LQ + + + Sbjct: 278 DAMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACAA 337 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + T+ A G R R LI+++YNANP SM A+ +L+ Sbjct: 338 ACVATSLGVPLKAASESISKFSPVGMRSRLEAICSDIQLINDAYNANPMSMTVALEILA- 396 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421 S +GR++ LGDM E+G+ ++ H+ + ++ + +G + L Sbjct: 397 -SVECKGRKVVALGDMLELGDFTRGAHMKAIKCCQELHVDVIGTAGPAFSDALNGLELEK 455 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V E L + + + GDVV+VK S +++ + +F Sbjct: 456 CEVVKCENSAALAEELTARITPGDVVLVKGSRGMRMELVVDAIKRKF 502 >gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Clostridium cf. saccharolyticum K10] Length = 476 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 203/463 (43%), Gaps = 20/463 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D ++A G + + ISIDSR+ + F + G DGH FI+ A+++GA Sbjct: 6 VRDAVKASHGRLLSGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAA 65 Query: 67 LVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V + A+ VDD AL +L R R ++ ITGSVGK Sbjct: 66 AVFTSEHSEESEEVKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGK 125 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTT+EM+ ALS+ + ++N+ +GVPLTL+++ + G+ ELGMS GE+ + Sbjct: 126 TTTREMVAAALSAGFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIA 185 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +AVIT + H+ N E I K +I +G+ G +FLN D+ L S Sbjct: 186 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDND----LLGIS 241 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A FG +NAD++ + + + + V +G H N L Sbjct: 242 RAREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAA 301 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++A + + K + + T+ID++YNA+P SMKAA+ V Sbjct: 302 ----LAVADYNGVPLEAAAEKLREFTGFKNRQQIREKQGITVIDDTYNASPDSMKAALRV 357 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 LS +AVL DM E+G + FH ++ E L+ + + G + + Sbjct: 358 LSSFGQARRR--VAVLADMKELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGAR 415 Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 S+ + + F++ L GD V+ K SNS Sbjct: 416 ERRPSLQTAAFTDREKMTEFLKRELSAGDCVLFKGSNSMKLGE 458 >gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] Length = 480 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 203/463 (43%), Gaps = 20/463 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D ++A G + + ISIDSR+ + F + G DGH FI+ A+++GA Sbjct: 10 VRDAVKASHGRLLSGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAA 69 Query: 67 LVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V + A+ VDD AL +L R R ++ ITGSVGK Sbjct: 70 AVFTSEHSEESEEVKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGK 129 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTT+EM+ ALS+ + ++N+ +GVPLTL+++ + G+ ELGMS GE+ + Sbjct: 130 TTTREMVAAALSAGFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIA 189 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +AVIT + H+ N E I K +I +G+ G +FLN D+ L S Sbjct: 190 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDND----LLGIS 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A FG +NAD++ + + + + V +G H N L Sbjct: 246 RAREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAA 305 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++A + + K + + T+ID++YNA+P SMKAA+ V Sbjct: 306 ----LAVADYNGVPLEAAAEKLREFTGFKNRQQIREKQGITVIDDTYNASPDSMKAALRV 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 LS +AVL DM E+G + FH ++ E L+ + + G + + Sbjct: 362 LSSFGQARRR--VAVLADMKELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGAR 419 Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 S+ + + F++ L GD V+ K SNS Sbjct: 420 ERRPSLQTAAFTDREKMTEFLKRELSAGDCVLFKGSNSMKLGE 462 >gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 464 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMAAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR ID++YNAN SMK+ Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL RI +GDM E+G+ S++ H +A+ + N+ V G + Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] Length = 454 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 133/464 (28%), Positives = 215/464 (46%), Gaps = 18/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + V GIS D+R+I F A++G ++DG ++I A +KGA Sbjct: 5 NLKTITELTNTIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VVN D PV VD+ + LA K +IAITGS GKTTTK++ Sbjct: 65 SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKTTTKDI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L K +YNN IG+ T+ + D + + E+G + GEIR LT++ P Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +HL N E IA AK EI EGL++ G LN DDS +K + + Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDSILREVKQEYKLP--E 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++D+++ K S +G+H N M++ + + Sbjct: 240 KTITFGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D K L R + F ++++SY +NP S+ + + + Sbjct: 296 MGLDYSDIAKGLKNIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 HG R+IAVLGDM E+G+ + H ++ + ++ I +V +G + + Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y ET + L +Q +VD +V+VK+S++ F +L+ + E Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453 >gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saburreum DSM 3986] gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saburreum DSM 3986] Length = 457 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 124/466 (26%), Positives = 210/466 (45%), Gaps = 18/466 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L+ A G I + I IDSR F + G D H F+ G Sbjct: 5 SVRELIAATGGVLIFGNEDAVFSNIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGC 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + + S +I V+D + AL L + R + ++ +TGSVGKTTT+EM Sbjct: 65 RVAISSRKDIFSKPDFNI--VLVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREM 122 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +ALS + K + ++N+ +GVP+T++R+ D + GI ELGMS GE+ + +V Sbjct: 123 TALALSDL-KVFKTPNNFNSQLGVPVTISRI-TDEEIGIIELGMSLFGEMERIAKIVGCD 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AH+ N E I S K I +G++ +FLN D+ + I Sbjct: 181 SAIITNIGTAHIENLHTKENIRSEKFHIMDGMKAGSVVFLNADNDMLSNPPKR--EGIIY 238 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +S + + D+ + + +S++V + G H N L+ L + Sbjct: 239 KFFSAKGNTDCDYYATDIVFHNAMPEFTAHICDRSIKVTLNVFGEHQVSNALVALAVAH- 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + I++ S + + T+ID++YNA+P SMKA++S+L Sbjct: 298 ---HYNLDIESASKHLSSFRGFSHRQELIELKNLTVIDDTYNASPDSMKASLSILKDFRA 354 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHV 424 + IAVL DM E+G FH ++ E +S V+ G + + I Sbjct: 355 RRK---IAVLADMKELGADEVKFHREVGEFISENVKPDAVFSVGELAREIVN--CTDIFG 409 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL--EEF 468 ++ + L ++ L DGDV + K SNS + +++ + E+F Sbjct: 410 KSFDSNEALEKYLLEYLEDGDVCLFKGSNSMRLFDVVDKIKNYEKF 455 >gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP 32953] gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis YPIII] gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis PB1/+] Length = 458 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 212/472 (44%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + + L + I + + ++ID+R + F A+KG +DGHDF Sbjct: 1 MIKV-SLRFLASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFA 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ GAG ++V+ ++ + P V D AL + A R + A I+A+TGS Sbjct: 60 EDAIAAGAGALLVSKRLL-----VGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSS 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+ KEM L G++NN IGVPLTL R+ + DF + ELG +H+GEI + Sbjct: 115 GKTSVKEMAAAILRQCGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIELGANHVGEIAY 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 T L RP A++ +A AHL F + +A AK EIF GL GT +N D + + + Sbjct: 175 TTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQE 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 H + +S +++ DF + + + + ++ + G H N L Sbjct: 235 TLHNKRVWR-FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + AD+ + L+ GR L+D+SYNAN SM AA Sbjct: 294 AAAALAMSVGADLAAVRQGLAQLQAVPGRLF---PVPLAEGKLLLDDSYNANVGSMIAAA 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+++ G R+ V+GDM E+GE + H + E L + V G L A Sbjct: 351 QVLAEMP----GYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVLSVGTLSQILSSA 406 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLEE 467 S + + + + L + + L V++K S S ++ L E+ Sbjct: 407 ---SGNGEHFQDQNTLSTRVNALLNEYPVITVLIKGSRSAAMENVVRALQEK 455 >gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae Taiwan19F-14] gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae Taiwan19F-14] gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA04375] Length = 457 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEDK 457 >gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] Length = 454 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + V GIS D+R+I F A++G ++DG ++I A +KGA Sbjct: 5 NLKTITELTNTIINEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VVN D PV VD+ + LA +IAITGS GKTTTK++ Sbjct: 65 SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L K +YNN IG+ T+ + D + + E+G + GEIR LT++ P Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA+IT I +HL N E IA AK EI EGL++ G LN DD +K + + Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLP--E 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G ++D+++ K S +G+H N M++ + + Sbjct: 240 KTITLGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D K L R + F ++++SY +NP S+ + + + Sbjct: 296 MGLDYSDIAKGLKNIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 HG R+IAVLGDM E+G+ + H ++ + ++ I +V +G + + Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y ET + L +Q +VD +V+VK+S++ F +L+ + E Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453 >gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme DSM 15981] gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme DSM 15981] Length = 476 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 208/470 (44%), Gaps = 29/470 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++A G + + + IS+DSR+++ + F I G D H FI A+ GA Sbjct: 6 VKQVMEAANGRLLCGNEEQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAV 65 Query: 67 LVVVNTDMVASIGSLSIP----------------VFGVDDVLGALNKLAVAARLRSKATI 110 V + S +I V+D AL L R R + Sbjct: 66 AVFTSAHRDISQVEKAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPL 125 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 + ITGSVGKTTT+EM+ ALS+ Y G+ N+ +GVP+T++ +P + + + ELGMS Sbjct: 126 VGITGSVGKTTTREMIAAALSAGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVIELGMS 185 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 GE+ + + AV+T I AH+ E I K I +G+ G +F+N DD Sbjct: 186 EPGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNPEGILFVNGDDP 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L A A G + I +G S +++ + K V +G Sbjct: 246 ----LLADIQAEGGRRIIRYGMSAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQVMGT 301 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 HM N + L + + D++ + + G K + T+ID+SYNA+P Sbjct: 302 HMVGNAMAALAVAAEYGVDMEE----AARKLGEFGGYKGRQQIHGFQGMTIIDDSYNASP 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 SMKA + VLS + P R+IAVL DM E+G + FH ++ ++ + + V L G Sbjct: 358 VSMKAGLEVLSSMKP--GARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLLYGEL 415 Query: 411 VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 A+ + L + +++ + +++ GD ++ K SNS Sbjct: 416 AAAIGEGLREAGGQSPFLLCGSLEQVKEWLKRETKSGDCILFKGSNSMKL 465 >gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA47901] Length = 457 Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 201/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 455 >gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 464 Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + A ++ L +GR LID++YNAN SMK+ Sbjct: 294 ALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEV---NQHCLLIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++VL RI +GDM E+G+ S + H +A+ + N+ V G + Sbjct: 351 AVAVLKNYPA----FRIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] Length = 456 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 123/467 (26%), Positives = 199/467 (42%), Gaps = 22/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF++L QA+ + +G+SIDSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLKAMTFNELAQALSARVL--SSDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ ++P V D AL +L R + AITGS GKT Sbjct: 59 AAKGAVGALVQREVA----DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE+L L + A G+ NN G PLTL + + + ELG S +GEI + Sbjct: 115 TVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRIGEIAYTVA 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +PH+A+I AH+ F G E+I AK EI EGL+ +GT LN DD FE + ++ Sbjct: 175 LTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRVRAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + + + H + N+ L Sbjct: 235 GRKVLTFAVLNAAAD----FHASNITVDARGCPSFTLHSPQGSEHVQLNLLGNHNVANAL 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A + + + R L +ID++YNAN +S+ AAI +L Sbjct: 291 AAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSVCAAIDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + VLGD+ E+G+ ++ H ++ S + ++ G ++ +A Sbjct: 351 KGFDTRK----VLVLGDIAELGDWAEQSHREVGAYAS-GKVDALYAVGPNMAHAVNAFGP 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLL 464 + T L + + + D +++K S S ++ L Sbjct: 406 GAR--HFATQAELIQAL--TAAEHDTHTTILIKGSRSAVMENVVAAL 448 >gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74] gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74] Length = 449 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 14/441 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--V 85 G+S D+R I P F A+KG ++DG+ F A+ GA +V+ VA S Sbjct: 19 TGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTDRC 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L AL LA R +I +TGS GKTTTKE++ LS YA G+ NN Sbjct: 79 LLVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNLNN 138 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL + + I E+G +H EI FL + P +IT I AHL F GIE Sbjct: 139 HIGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGLITNIGKAHLEGFGGIEG 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + K E+++ L + + + I++ +F ++ + Sbjct: 199 VRIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTFAEAIFYPAANPDEET 258 Query: 266 C--SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 +S + V E+ H G + NML L I + A +A++ ++P Sbjct: 259 TTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGVSPEEANRAIADYNPT 318 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R ++ N T++ ++YNANP+SM + + Q + R+ +LGDM E+G+ Sbjct: 319 NNRSQQVIKGTN----TVLLDAYNANPSSM---AAAIQQFAATPAKRKAVILGDMYELGD 371 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S++ H L ++++ N V L+G + + LP+ +Y L ++ + + Sbjct: 372 ESEAEHAALGKLIAESNFDLVILAGKDMRFALEYLPK---AYYFPDKFSLHNWVMDNPMA 428 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 +++K S ++ + Sbjct: 429 DTHILIKGSRGMSLESVVPFI 449 >gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 464 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 119/479 (24%), Positives = 196/479 (40%), Gaps = 30/479 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + + + IG + V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-QQIAEILNAKLIGNG-ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +G VVV + + +P V D AL +LA + + +A+TGS GKT Sbjct: 59 VAQGCVAVVVEREC-----EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVP+TL R+ + + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL++ G +N + + K Sbjct: 174 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK 233 Query: 237 AKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + AD+ + S + + + +G H N Sbjct: 234 EIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + A ++ L +GR + ID+SYNAN SMK+ Sbjct: 294 ALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDSYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AISVL RI +GDM E+GE S H ++A+ + + G + Sbjct: 351 AISVLENYPA----YRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468 H+ + F+ + +V++ K S S +I+ L + F Sbjct: 407 QQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 460 >gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae L20] gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 464 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR ID++YNAN SMK+ Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL RI +GDM E+G S++ H +A+ + N+ V G + Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGGESEACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] Length = 453 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 138/472 (29%), Positives = 204/472 (43%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L Q QG IG +S D+R I Q F A+ G +D HDF A Sbjct: 1 MIE-TSLSHLAQLTQGQLIGD--DAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V + L + V D AL +L R + +AITGS GKT Sbjct: 58 VDAGAIALLVERAL-----DLPVAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IG PLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP +A++ +A AHL F I+ + AK EI++GL G +N D E + Sbjct: 173 LVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW-TQVL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T +S + + ++ + + + + IG H N + Sbjct: 232 ADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANAIAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I A + L P +GR + + N LID+SYNA+ +MKAA+ +L Sbjct: 292 IIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIK---LIDDSYNASVPAMKAAVDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G+R VLG M E+G S + H + E + N HV G + Sbjct: 349 GSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQL--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468 + L +I+ +L + V+VK +NS G ++ L E + Sbjct: 402 -CGGKHFSDHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452 >gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 456 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 129/481 (26%), Positives = 201/481 (41%), Gaps = 36/481 (7%) Query: 1 MNPLW-------TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53 M P W T + QA+ P + GI DSR IA F A++G +DG Sbjct: 1 MQPHWRGKIVNTTLGAIAQALG--LDTTHPNLPITGICTDSRQIAAGNLFVALRGETFDG 58 Query: 54 HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 H F+ A GA ++V + S +P V + L A +L R + A +IA+ Sbjct: 59 HQFVDQAAAAGAIALMVEAPL-----SSDLPQLQVANTLSAYQRLGQWWRQQCPAKVIAV 113 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTTKEM+ LS ++NN IGVP TL ++ F + E+GM G Sbjct: 114 TGSVGKTTTKEMIAAVLSHYGAVLKTEANFNNEIGVPKTLLQLEPHHQFAVIEMGMRARG 173 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI L+ + +P +AVIT + AH+ E IA AK E+ + GT LN D Sbjct: 174 EIALLSQIAQPDVAVITNVGTAHIGRLGSREAIAQAKCELLAEMPPGGTAVLNADSPLLL 233 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A+ + T G + +Q + +++ Sbjct: 234 PTVAQVWSGRTITYGLEGGTLRGIYQPPQTLHVGGRTYTVPLAGAHHALNFL-------- 285 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + +D L V E R + L+DE+YNA SM Sbjct: 286 --------AALGVLQALDVESDRLPVQLTLELPSGRGGRYRLEPDILLLDETYNAGLESM 337 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHV 411 AA+ +L + +AVLG M E+G S SFH + ++ ++ +++ G Sbjct: 338 VAALHLLRSLPGQR---HLAVLGPMRELGAFSLSFHEQVGATVAQLDLDGLFILDQGEEG 394 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 AL + I + + L ++ L GD ++ K+S++ R++N L + +P + Sbjct: 395 AALAQGAGQ-IPTQQFGSHEELVEYLLRELQAGDRLLFKASHAVALDRVVNQLRQRWPKL 453 Query: 472 Q 472 Q Sbjct: 454 Q 454 >gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1] Length = 456 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 202/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSEHPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + ++ + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPLG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDQKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] Length = 464 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 119/479 (24%), Positives = 197/479 (41%), Gaps = 30/479 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + + + IG + V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-QQIAEILNAKLIGNG-ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +G VVV + + +P V D AL +LA + + +A+TGS GKT Sbjct: 59 VAQGCVAVVVEREC-----EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVP+TL R+ + + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL++ G +N + + K Sbjct: 174 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 S + + AD+ + S + + + +G H N Sbjct: 234 EIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + A ++ L +GR + ID++YNAN SMK+ Sbjct: 294 ALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AISVL RI +GDM E+GE S H ++A+ + + G + Sbjct: 351 AISVLENYPA----YRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468 H+ + F+ + +V++ K S S +I+ L + F Sbjct: 407 QQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 460 >gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 440 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 127/447 (28%), Positives = 203/447 (45%), Gaps = 18/447 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + ++ID+R + F A+KG +DGHDF A +V+ + Sbjct: 7 DNVDITEVTIDTRQVTAGCLFVALKGERFDGHDFAED-----AVAAGAGALLVSKRLLVG 61 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V D AL + A R + A ++A+TGS GKT+ KEM+ L G+ Sbjct: 62 APQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGN 121 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ ++ AHL F Sbjct: 122 FNNDIGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGS 181 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +A AK EIF GL GT +N D + + H + +S +++ DF Sbjct: 182 LAGVAQAKGEIFAGLPANGTAIINADSHDWPHWQETLHNKRVWR-FSPHAAEDIDFYASD 240 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + ++ + +++ G H N L + + AD+ + L+ Sbjct: 241 VRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALAMSVGADLAAVRQGLTQLQA 300 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 GR + A L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G Sbjct: 301 VPGRLFPIQLAAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELG 353 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + + H + E + V G LAL DA S + + + + L+ Sbjct: 354 DTAVDCHRQVGEAAKQAGVDKVLSVGTLSLALSDA---SECGEHFQDKSAIVTRVSELLL 410 Query: 443 DGDV--VVVKSSNSCGFYRLINLLLEE 467 + V V++K S S ++ L E+ Sbjct: 411 EHPVITVLIKGSRSAAMENVVRALQEK 437 >gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] Length = 452 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 214/471 (45%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + ++ +A G +G ++ +S DSR I + F A+ G +D HDFI Sbjct: 1 MITML-LSEIAKACDGRLVG--ADCQISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA ++V+ ++ ++P V D AL +A A+TGS GKT Sbjct: 58 QEQGATALLVSKEV-----DTTLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L+ + A G++NN IGVPLTL R DF + ELG +H EI + T Sbjct: 113 TVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P++A++ IA AHL F IE +A AK EIFEGL++ G N D + + Sbjct: 173 LAQPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLQENGIAIYNLDSNGLPKWSSLF- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + + +ADF + + ++ +++V IG H N + Sbjct: 232 -EGKQVVSFAMDDSSADFYASNIEVNAIGEPSFQLNTPKGNIQVSLGIIGKHNVANAVAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + A ++ + L +GR A +ID++YNA+ +MKAA+ + Sbjct: 291 AALAIQAHASLNDIQQGLQELGSVKGRVAVETLASGLK---VIDDTYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L G+R VLG+M E+GE S + H ++ E + Y V G + + Sbjct: 348 LGGFK----GQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISEL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466 + + ET L ++ L + V+VK +NS +++ L E Sbjct: 402 --CNGRHFETRSDLNAYLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 450 >gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 456 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 124/470 (26%), Positives = 203/470 (43%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I P + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLMAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + ++ + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPLG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 466 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 119/479 (24%), Positives = 196/479 (40%), Gaps = 28/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + + + IG + V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-QQIAEILNAKLIGNG-ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +G VVV + + +P V D AL +LA + + +A+TGS GKT Sbjct: 59 VAQGCVAVVVERECE---CEIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVP+TL R+ + + ELG +H+GEI Sbjct: 116 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 175 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL++ G +N + + K Sbjct: 176 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK 235 Query: 237 AKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + AD+ + S + + + +G H N Sbjct: 236 EIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSN 295 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + A ++ L +GR + ID+SYNAN SMK+ Sbjct: 296 ALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDSYNANVDSMKS 352 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AISVL RI +GDM E+GE S H ++A+ + + G + Sbjct: 353 AISVLENYPA----YRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVIS 408 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468 H+ + F+ + +V++ K S S +I+ L + F Sbjct: 409 QQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 462 >gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus peroris ATCC 700780] gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus peroris ATCC 700780] Length = 455 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 204/473 (43%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ + + + + +N DSR IA + F +KG DGHDFI A + Sbjct: 3 LTIHEVARVVGAKNDVTVFLDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L + ++ S P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAALTLSEKEVA------SHPYILVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTNYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T I AHL+ F EIA K +I +G+ + G + D L K + Sbjct: 176 PKTAIVTLIGEAHLAFFKDRSEIAKGKLQIVDGMPEGGLLLAPSDSIVDSYLPTKQQVVR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +L + + + + G + A N ++ + Sbjct: 236 ----------FGQGAELEVTDLVERKDSLTFKTNFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + ++ + YNANP +MK + S I Sbjct: 286 LQEGVPEEQIHQAFQNLELTRNRTEWKKATNGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G+++AVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKLAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + + + ++ SL D +++K SNS +L+ L E+ Sbjct: 403 IGHVYYFKKTADEDQFEAMTKQVKESLGAHDQILLKGSNSMNLAKLVESLQED 455 >gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae P1031] gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae P1031] Length = 457 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +++ QA+ + + + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLTPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457 >gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] Length = 483 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 205/484 (42%), Gaps = 26/484 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ + ++ +A+ G IG + DSR P F AI+G DGHDF+ Sbjct: 1 MVPM-SVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAIT 114 ++GA + +V+ ++ S +P V D + AL +LA R R II +T Sbjct: 60 TAEQGATVAIVDHEV----ESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GE Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I LT + P+ A++ + AHL F E IA AK+EI +GL GT LN DD Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + + + + + + V G V G H Sbjct: 236 MAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353 N L + +T + L+ H + FTLID+S+NANP SM Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 355 Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 KA ++ L + + V LG M E+G + H + + I + G Sbjct: 356 KAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAVGSAQ 415 Query: 409 -FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYR 459 H+ AL AL V +D + VV++K S++ G Sbjct: 416 DQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVVDLARNHPDAVVLLKGSHASGLSA 475 Query: 460 LINL 463 L Sbjct: 476 LAER 479 >gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 464 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLSGSHFTLHSPQGEIEINLPYLGAHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + A ++ L +GR LID++YNAN SMK+ Sbjct: 294 ALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEV---NQHCLLIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++VL RI +GDM E+G+ S + H +A+ + N+ V G + Sbjct: 351 AVAVLKNYPA----FRIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] Length = 464 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + G G V S D+R FFA+KG H+D H ++ +A Sbjct: 1 MIKLTT-NEIADILSGQLSGNGG-VMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGCVAVVVEREC-----EISVPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTVCEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYTGSDQDSYADFWAENVELDLSGSHFTLHSPQGEIEINLPYLGAHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD++ L +GR LID++YNAN SMK+ Sbjct: 294 ALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEV---NQHCLLIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A++VL RI +GDM E+G+ S + H +A+ + N+ V G + Sbjct: 351 AVAVLKNYPA----FRIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGQQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----GETAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456 >gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus mitis NCTC 12261] gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus mitis NCTC 12261] Length = 457 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 127/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + + + + + DSR IA + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + + P VDDVL A +LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKKVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGVNDQILLKGSNSMNLAKLLESLENEAK 457 >gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] Length = 458 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 194/468 (41%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L A+ IG + +S DSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEML L + A G+ NN +GVPLTL ++ + ELG S +GEI Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L RPH+A+IT AH+ F G E+I AK EI EGL GT LN DD F K Sbjct: 175 YTVGLTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFATWK 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ A G + + ADF ++ + V + Sbjct: 235 AR--ANGRPLLTFSLEQAQADFHAADLQRDARGCMGFRLHGVAGEAQVQLNLLGRHNVAN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I A + L +ID+SYNANPASM AA Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I I GR + VLGDM E+G ++ H ++ + +S ++ G + Sbjct: 351 ID----ILGGFSGRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMANAVQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + L + + +++K S S +++ L Sbjct: 406 AFGEAGR--HFADQASLIRALATE-QPTTTILIKGSRSAAMDKVVAAL 450 >gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] Length = 455 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 208/468 (44%), Gaps = 28/468 (5%) Query: 6 TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++ + + + I Q G++ D+R++ E F A+ G +DGH+F AV+ Sbjct: 7 SLGEIAKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQAVE 66 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA +V + + +++P V D L A L R + ++AITGSVGKTTT Sbjct: 67 KGAIATIVKKGVFSKT--VTLPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTT 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ ALS + +YNN IGVP TL + + D+ + E+GM L EI LT + Sbjct: 125 KELVAAALSQFGTVFKTRANYNNEIGVPKTLLGLTTEHDYAVVEMGMRGLEEIALLTQIA 184 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A+IT + AH+ IA AK E+ L GT LN+DD+ A+ + Sbjct: 185 KPTVALITNVGTAHIGRLGSRAAIAQAKCELLRELPTDGTAVLNHDDARLMSTAARFWSG 244 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T G + +++ G H A N+L + Sbjct: 245 TQITYGLEGGDVR-------------GQIAGSDIIVDGVKIPLPLPGRHNALNLLSAIAT 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L + + S R + L+DE+YNA + AA+ + Sbjct: 292 LKALNLNWQQLSQGFS----VPMPAGRSQRHQLPNDILLLDETYNAGAEATIAALEL--- 344 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPR 420 ++ R IAVLG M E+G S H + + ++ + + + A+ D+ R Sbjct: 345 LADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLILADPIEAKAMADSA-R 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 S+ + D L +++ L GD ++ K+S S ++++ LL++F Sbjct: 404 SVPSQQFDNHDQLAQCLKAQLQAGDRLLFKASRSVEMDKVVDQLLKDF 451 >gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae Hungary19A-6] gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae Hungary19A-6] Length = 457 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 127/475 (26%), Positives = 200/475 (42%), Gaps = 30/475 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + + P VDDVL A L+ ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKKVA------NHPYILVDDVLTAFQTLSAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSITYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G++ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMDSGSLLLAPADTIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 HV+Y + + L ++ SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENEAK 457 >gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis glossinidius str. 'morsitans'] gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis glossinidius str. 'morsitans'] Length = 455 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 206/473 (43%), Gaps = 23/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR--SIAPQEAFFAIKGPHYDGHDFIL 58 M P +T + + +G + + DSR S A F A+KG +D HDF Sbjct: 1 MIP-FTLSAIAPVLNAERVGD--DCTILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAE 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV GA ++VN + L +P V D AL +L R + A ++A+TGS G Sbjct: 58 QAVAAGAAALLVNRRL-----PLDVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+ KEM L + A G++NN IGVPLTL R+ DF + ELG +HLGEI + Sbjct: 113 KTSVKEMTAAILRQCGRVLATEGNFNNDIGVPLTLLRLTPAHDFAVIELGANHLGEIAWT 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LVRP A++ ++ AHL+ F + +A AK EIF GL G LN D + + Sbjct: 173 TDLVRPETALVNNLSAAHLAGFGSLSGVAQAKGEIFAGLPANGCGILNADSHDWPHWQQV 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + DF + + + V G H N L Sbjct: 233 LGHKAVWRFA-VQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + A++ L+ GR ++D+SYNAN SM AA Sbjct: 292 ACALALSVGAELPAVAAGLAQLQAVPGRLF---PIALGAGRLMLDDSYNANVGSMTAAAQ 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+++ G R+ V+GDM E+GE + H + E ++L I V G + +A Sbjct: 349 VLAEMP----GYRVMVVGDMAELGEEAAECHRQVGEAVALAGIDKVLSVGSLSHLIGEA- 403 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 S + + L + L + V V+VK S S +++ L E+ P Sbjct: 404 --SGRGEHFQDKTALTARLAQLLSEQAVMTVLVKGSRSAAMEQVVRALQEKAP 454 >gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter sp. SXCC-1] gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter sp. SXCC-1] Length = 463 Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 158/468 (33%), Positives = 240/468 (51%), Gaps = 13/468 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M LW DLL A GH G+SID+R++ P + F A++G + +GHD + Sbjct: 1 MTLLWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHVAR 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA VV + D + VDD L A+ +A AR R ++A+TGSVGK Sbjct: 61 ALEAGAACVVAHEDC-----GTDPRILRVDDTLAAMQAMARYARARFGGRMLAVTGSVGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ K+ML AL++ T+ + SYNNH GVPLTLAR+P + + E+GM+H GEI L Sbjct: 116 TSVKDMLHAALAACGPTHCAVASYNNHWGVPLTLARLPAGAAYCVCEIGMNHAGEIAPLA 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRP +AV+TT+A +HL +E IA KAEI L + G + + ++ Sbjct: 176 AMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRGGIGIIPDGV-SGQAFFERN 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A T++ G + + + S ++L G E G HMA N ++ Sbjct: 235 AAQAGATVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVGEAHVSAPGRHMAANAMLA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG AD+ A+ L+ F P GRG + ++ L+DESYNA+PAS++AA+ + Sbjct: 295 LGAACAAGADMARAVAGLATFRPGAGRGAMTKVMQDKVA--LLDESYNASPASVQAALDL 352 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L ++P GRR+AVLGDM E+G + H+ L N V+ G ++ L D LP Sbjct: 353 LGLVAP---GRRVAVLGDMLELGAFAGHEHVSLLP-AVRANADIVFCCGPNMKTLFDTLP 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 S+ ++ L ++++L GD V+VK S ++ L + Sbjct: 409 PSLRGAWTPDSGQLAPLVRAALRAGDTVMVKGSLGSRMRHVVASLQAD 456 >gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK150] Length = 456 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 124/470 (26%), Positives = 202/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I P F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + ++ + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEAAIAQAFSELKLTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPTDQILLKGSNSMNLAKLVEDLED 454 >gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 470 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 169/448 (37%), Positives = 241/448 (53%), Gaps = 10/448 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+GISID+RSIA + F A+K DGH+F+ A++KGAG +V+ S Sbjct: 20 DWRVDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR--RPEGVSEDA 76 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ VDDV L L A R R+ A +IA+TGSVGKT+TKEML LS +T+A + SY Sbjct: 77 PLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASY 136 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNH GVPLTLARMP D +F + E+GM+H GEI L RPH+A++TT+AP HL F GI Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGI 196 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E IA+ KA I +GLE G LN D + + + + G Sbjct: 197 EGIAAEKAAIMDGLEPGGVAILNADIAEAPILQSVAERVTSDVQWFGTGTGPIAPTYHLT 256 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + E + + G++ + +G H A N L L ++ L D+ A+++LS++ Sbjct: 257 GTTLRGDETEAVVMLPGGQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLW 316 Query: 321 HPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P GRG R + QG L+D+SYNANP S+ AA++VL+ GRRIA LGDM Sbjct: 317 SPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGDM 374 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G Q H DLA++ ++ + + G + AL ALP + T + + Sbjct: 375 KELGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPADKRGGHYATSHDVRADLA 434 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + GDVV+ K S S ++++ + E Sbjct: 435 GHIAAGDVVLAKGSLSMALAKVVDGIRE 462 >gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] Length = 459 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 205/468 (43%), Gaps = 18/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M ++ + +Q +Q P N ++ D+RS+ P + F A++G ++DGH F+ Sbjct: 1 MMRAFSLAEAVQWLQPDCHFDGPDKLTFNAVNTDTRSLLPGQLFVALRGENFDGHRFLQK 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A ++GA VV+ A + +P V D L AL +LA R S AT+IAITGS GK Sbjct: 61 AQEQGASAAVVDCIDAA----VDLPQLLVSDTLIALGELATRHRATSNATLIAITGSSGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT +EM L + G+ NNHIGVPLTL + + FG ELG S L EI + Sbjct: 117 TTVREMTGAILQQMGPALITQGNLNNHIGVPLTLFGLAPEHRFGAIELGASGLNEIAYTV 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +V+P +A++T AHL F + I AK EI +G+ G + LN DD F+ ++ Sbjct: 177 AMVKPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVADDGLVVLNRDDPAFDQWLVRA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + ++ G K + G ++ G H N M Sbjct: 237 GRRRVASVSRAG----HAGADYKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L A + L +GR A +TLID+SYNANPAS+KAA++V Sbjct: 293 AAAARELGATNEHIKAGLEQVLAVKGRLHIQPLAQG---WTLIDDSYNANPASIKAALAV 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ RIAVLG M E+GE + H ++A+ I + G Sbjct: 350 LA----KRPSPRIAVLGAMAELGEQAAQLHREVAQYARDLGIERLLAVGPGCEGYGRGF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + D + + V+VK S S + + + Sbjct: 405 -GATVEICASHDQAINAVLKNTQVPATVLVKGSRSSAMEIVAEGIKNK 451 >gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 504 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 199/476 (41%), Gaps = 32/476 (6%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN T H++ + I + DSR I P + F +KG DGHDFI Sbjct: 49 MN--LTLHEVAHLVHAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 105 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA + P V+DVL A LA A ++K + A+TGS GK Sbjct: 106 AFENGAVATFSEKVVE------GHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 159 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+ML LS+ TY G+YNN IG+P T+ MP D + E+G HLG+I L+ Sbjct: 160 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 219 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P A++T I AHL F EIA K +I +G+ + G + + D L K Sbjct: 220 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPEKQ 279 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + D ++ + + + + + G + A N ++ Sbjct: 280 TVVR----------FGPDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIA 329 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + R + + + ++ + YNANP +M+ + Sbjct: 330 AYVALQEGVSEAAIRDSFETLQLTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILET 386 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + GR++AVL DM E+GE S H + LS + V G + L Sbjct: 387 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 446 Query: 420 RS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + HV+Y + + + ++ SL + D +++K SNS +L+ L Sbjct: 447 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 502 >gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [polymorphum gilvum SL003B-26A1] gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polymorphum gilvum SL003B-26A1] Length = 476 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 206/471 (43%), Positives = 277/471 (58%), Gaps = 3/471 (0%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT + A G +G VP G + GISIDSR++ P +AF AI+G +DGHDF+ Sbjct: 1 MTQPLWTRDAFVDATGGSVLGDVP-GAIGGISIDSRTLQPGDAFVAIEGERFDGHDFVAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A++ GA L +V D + + VDD L AL LA AAR RS A I+A+TGSVGK Sbjct: 60 ALEAGAALALVARDRLERL-PADGRYVVVDDPLEALRGLARAARARSHARIVAVTGSVGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T TKE L +AL +T+A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEI L Sbjct: 119 TGTKEALRLALERSGRTHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHAGEITPLV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LVRPH+A+ITT+ P HL F +E+IA AKAEIF GLE G LN D++ F+LL + Sbjct: 179 ALVRPHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPGGVAILNRDNAQFDLLTFLA 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+ I +FG+ AD ++ + S ++ ++ G+ + G H+ +N L Sbjct: 239 RNAGVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAV 298 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L AD+ A AL +GRG + R L G TLIDESYNANPASM+AA+ V Sbjct: 299 LLAVVELGADLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L GRRIAVLGDM E+GE + + H L E ++ + V+ +G H+ L + LP Sbjct: 359 LGDAQVSPPGRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRRLWELLP 418 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Y+E GL ++ L GDVV++K S L+ L +E+PA Sbjct: 419 VHRRAAYAEEAAGLAAMLKEDLRPGDVVMIKGSLGTRMGPLVEALKQEYPA 469 >gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] Length = 474 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 122/477 (25%), Positives = 188/477 (39%), Gaps = 20/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ G I P ++G + IDSR + F A G H DGH + Sbjct: 1 MIAL-SLAEIADITGGRPHDIPDPSVRISGPVVIDSRKVEAGSLFAAFAGEHVDGHAYAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + + +P V DV AL LA A R ++A+TGS G Sbjct: 60 -------RAVAAGAAAVLAARPVGVPAIVVPDVEKALGALARAVVERLGTDVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L S T GS NN IG+PLT + + + E+G +G I +L Sbjct: 113 KTSTKDLIAQVLQSHAPTVWTPGSLNNEIGLPLTALQATAETRHLVLEMGARGIGHIAYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L + +LL Sbjct: 173 TGLTPPRIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPAEADG-GVAVLNADDLLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A FG++++AD + + + V + Sbjct: 232 MSARTKARTVLFGEAEDADVRATEVRMTPGGRPAFTLHTPTGCSDVTLRLY-GEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 291 LAAAAVAHVLGMSAMEIATALSGAGTLSRWRMEVTERADGVTIVNDAYNANPESMRAALR 350 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L + + GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 351 ALVAMGGAARATGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 410 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++S L GDVV+VK+S S G R+ LLE Sbjct: 411 QLGAYNEGSWGEESVLVSDAQAAVDLLRSELRPGDVVLVKASRSIGLERVALALLER 467 >gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK353] Length = 456 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 203/470 (43%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSDRPVAEG------AYILVDDVLAAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ S R + + + ++ + YNANP +M+ + S I Sbjct: 288 EGVAEAAITQSFSELELTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILETFSTIPS 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii] gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii] Length = 515 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 220/470 (46%), Gaps = 21/470 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + QA+ G G I D+R I + F A+ G ++DG+ F+ A+ Sbjct: 49 IWDCQQIAQAVGGILAKQGSPG---SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G + + + V D L AL+KLAV AR R + ++ ITGS GKTTTK Sbjct: 106 GCAGAI----GRSMPTDWPVGFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTK 161 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 M+ +AL S+ + GS NNHIGVPLTL +P + E+GM+HLGEI L+ + + Sbjct: 162 AMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRICK 221 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + V+ + PAH+ N +E++A AK E+F + LN DD + Sbjct: 222 PSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAM----PVSP 277 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMT 299 I FG+S+ +D +L + S ++ LQ + G H+A N Sbjct: 278 DAMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACAA 337 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + L + A +++S F P R + + N LI+++YNANP SM A+ + Sbjct: 338 ACVATSLGVPLKAASESISKFSPVGMRSRLEAISSNIQ---LINDAYNANPMSMTVALEI 394 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ S +GR++ LGDM E+G+ ++ H+ + ++ + +G + L Sbjct: 395 LA--SVECKGRKVVALGDMLELGDFARGAHMKAIKCCQEVHVDVIGTAGPAFSDALNGLE 452 Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V E L + + + GDVV+VK S +++ + +F Sbjct: 453 LEKCEVVKCENSAALAEELTARVTPGDVVLVKGSRGMRMELVVDAIKRKF 502 >gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 465 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 205/469 (43%), Gaps = 24/469 (5%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L QA QG +P+ + I DSR +AF A+KG +D HDF+ + Sbjct: 14 WTAEQLQQATQGEWFRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V + I V D AL L R + + +IA+TGS GKTTT Sbjct: 74 GCQIAIVERPI-----DSDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + F + ELG +H GEI + ++LV Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRPEHQFAVMELGANHQGEIDYTSNLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P++A I I AHL F G + I AK+EI+ + GT + DD F ++ Sbjct: 189 QPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILPDGTAIVPSDDDFTATIRQ---NA 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G I SFG+ D + + + + + S V G H QN Sbjct: 246 GNHPILSFGE--GGDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D ++ L +GR + + ID++YNANP SM ++ Sbjct: 304 ALAIGIPLDDIVQGLEQAQGAKGRLNFIQ----HQNYLFIDDTYNANPTSM----RAAAK 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +G ++ V+GD+ E+G+ S H DL L + H+ + G A + + Sbjct: 356 VLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVVVGEFAEAAQQGSGCAE 415 Query: 423 HVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 ++H T F+ + + + K S L+ L+E+ Sbjct: 416 NLHAFATQADALPFLINLVQTHQPQSMSFLFKGSRYTHMETLMADLMEK 464 >gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera sp. 301] gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera sp. 301] Length = 464 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 211/468 (45%), Gaps = 24/468 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + AIQ +G + DSRS+ + F A+KG ++DGH F A+ + Sbjct: 1 MMLLSEAANAIQATLLG--ADVTFTSVGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQ 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+++ + P VDD +L +LA R + + A+TGS GKTT K Sbjct: 59 GAAAVLISDRTLNVQ-----PAILVDDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVK 113 Query: 124 EMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 EML L + +G+ NNHIG+PLTL ++ + + E+GM+H GEI +L+ Sbjct: 114 EMLASILRAACDQPDAVLATVGNLNNHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLS 173 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P +A+I AH+ E IA AK EIFEGL T +N DD F L Sbjct: 174 RIGKPTVALINNAGNAHIGELGSFEAIARAKGEIFEGLAADATAVINADDVFAPLWLD-- 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + I +FG AD + ++ + S +E+ +++V G H N L Sbjct: 232 -LAGQRKIMTFGLKNKADVTAQ-YQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + A + L + +GR + +ID++YNANP SMK AI V Sbjct: 290 TSTALAMGASLQAVSIGLENYAGVKGR---LQQKAGLNGALVIDDTYNANPMSMKVAIDV 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L +S G +I VLGDM E+G+ + H ++ + +++ G Sbjct: 347 LMAMS----GEKILVLGDMGELGDNAAEMHAEIGSYAKASGLKSLFVLGDMSAETAKTFG 402 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T L ++ + G V+VK S R++N ++ + Sbjct: 403 AG--AKHYTTPQDLVTDLRKQMQQGTNVLVKGSRFMAMERVVNEIVTK 448 >gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. K90mix] gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. K90mix] Length = 457 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 133/466 (28%), Positives = 208/466 (44%), Gaps = 25/466 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T +L A++G + G+ D+R F A++GP +D H+ + A Sbjct: 1 MIRM-TGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV--A 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +++V + + P V D AL +LA R RS+A +IA+TGS GKT Sbjct: 58 ADLPAAVLLVER-----VLDVPHPQVVVADTGEALGRLAQHWRRRSRARVIALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L + +A G+ NN IGVPLTL MP D D+ + E+G +H GEI + Sbjct: 113 TTKEMLRCILEGVGSVHATQGNLNNEIGVPLTLLAMPEDTDYAVIEMGANHAGEIGRMAR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239 P +A+IT AHL F +E +A AKAEIF G + GT +N DD F + + + Sbjct: 173 WTEPMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFADYWLSLN 232 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + G + + + + G ++ G H+A N + Sbjct: 233 EHHHCQRFSLEGGGEIEGVWQAPDRL-------RLTILGAGRDLRLASPGRHVAANAIAA 285 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +D L+ + P +GR + L D++YNANP S++A + V Sbjct: 286 AAAANAVGVAIDAIANGLAGWTPVQGRLQELWHVSG---ARLWDDTYNANPDSLRAGLEV 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GRRI VLG M E+G + H + + + + G +A Sbjct: 343 LAAMP----GRRILVLGAMGELGAETPVLHRETGALARAMGVDYCLALGEAARDSAEAFG 398 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + D L +++ L D V++K S S R+I L Sbjct: 399 EG--GEWFADHDALRTRLEALLEDETTVLIKGSRSQHMERIIEGLE 442 >gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] Length = 456 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 199/476 (41%), Gaps = 32/476 (6%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN T H++ ++ I + DSR I P + F +KG DGHDFI Sbjct: 1 MN--LTLHEVAHLVRAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA + P V+DVL A LA A ++K + A+TGS GK Sbjct: 58 AFENGAVATFSEKVVE------GHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+ML LS+ TY G+YNN IG+P T+ MP D + E+G HLG+I L+ Sbjct: 112 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 171 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P A++T I AHL F EIA K +I +G+ + G + + D L K Sbjct: 172 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVNAYLPEKQ 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + D ++ + + + + + G + A N ++ Sbjct: 232 KVVR----------FGPDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIA 281 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + R + + ++ + YNANP +M+ + Sbjct: 282 AYVALQEGVSEAAIRDSFETLQLTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILET 338 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + GR++AVL DM E+GE S H + LS + V G + L Sbjct: 339 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 398 Query: 420 RS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + HV+Y + + + ++ SL + D +++K SNS +L+ L Sbjct: 399 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 454 >gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 460 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 134/480 (27%), Positives = 213/480 (44%), Gaps = 37/480 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + L QA++G IG ++ +S D+R+IA Q F A+KG +D HDF A Sbjct: 1 MISV-SLASLAQAVEGQLIG--SDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGS 116 GA ++V+ + + +P V D AL L + + +A+TGS Sbjct: 58 KDNGAVALLVSRHL-----PVELPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM L++ K A G++NN IG PLTL R+ + + + ELG +HLGEI Sbjct: 113 CGKTTVKEMCAAILATKGKVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHLGEIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T+LV+P +A+I +A AHL F ++ +A AK EIFEGL K T +N + EL Sbjct: 173 YTTNLVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASNDRELWA 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 L K + +F + ADF + S+ + + + N+ Sbjct: 233 ---PLLADKNVITFSSEEQADFFASDIELDSDGYPHFELHSPQGSVAI--HLSQLGLHNV 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L ++ + T + R + +ID++YNA+ AS+KAA Sbjct: 288 SNALAAAALTSVLGATLAEIKQGLETATNVKGRVAVSQPMVGLRVIDDTYNASVASVKAA 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +L+ +G+R +LGDM E+GE S++ H ++ + V G + + Sbjct: 348 IDLLASY----QGQRWFILGDMAELGEESENLHREVGLYAQTKGLDKVMTFGKASAVVSE 403 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----------VVVVKSSNSCGFYRLINLLLE 466 H + L + L D V+VK + S ++ L E Sbjct: 404 L----NHGQHFADKQPLIAMVNELL--NDQINQQNPLEVTVLVKGARSSRMEEVVTALQE 457 >gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] Length = 449 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 133/465 (28%), Positives = 211/465 (45%), Gaps = 25/465 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ +A G +G ++ +S DSR I Q F A+ G +D HDFI ++GA Sbjct: 3 LSEIAKACDGRLVG--ADCQISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGAT 60 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V+ ++ ++P V D AL +A A+TGS GKTT KEML Sbjct: 61 ALLVSKEV-----DTTLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEML 115 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + A G++NN IGVPLTL R DF + ELG +H EI + T L +P++ Sbjct: 116 ASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQPNV 175 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A++ IA AHL F IE +A AK EIFEGL++ G N D + + G + Sbjct: 176 ALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENGIAIYNLDSNGLPKWSSLF--EGKQV 233 Query: 247 IYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + ADF + + ++ S++V IG H N + + Sbjct: 234 VSFAMNDSCADFYASNIEVNAIGEPSFQLNTPKGSIQVSLGIIGKHNVANAVAAAALAIQ 293 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + ++ + L +GR A +ID++YNA+ +MKAA+ +L Sbjct: 294 ANSSLNDIQQGLQELGSVKGRVAVETLASGLK---VIDDTYNASVPAMKAAVELLGGFK- 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G+R VLG+M E+GE S + H ++ E + Y V G + + + Sbjct: 350 ---GQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISEL----CNGR 402 Query: 426 YSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466 + ET L ++ L + V+VK +NS +++ L E Sbjct: 403 HFETRSDLNAYLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 447 >gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] Length = 454 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 132/473 (27%), Positives = 213/473 (45%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T D+ ++G G + + ++ D+R+I F A+ G +D HDF A Sbjct: 1 MIAL-TLSDIANIVEGTQSGG--EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA ++V + + IP V D AL L R +AITGS GKT Sbjct: 58 ADKGAAALIVERQL-----DIDIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + + G++NN IGVPLTL R DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSGLGQVLYTAGNFNNDIGVPLTLLRSTPQDDFSVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F ++ + +AK EI++GL GT +N D + Sbjct: 173 LVKPDIAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALINLDSQGESIWSEVLQ 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299 + T ++ NADF SE + ++E+ +G H N + Sbjct: 233 DKNLIT--FSKQNTNADFYGSDIAMSSEGYPLFTLHTPIGNVELQLSLLGEHNVANAVAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + A ++ L + R + TLID+SYNA S+ A + Sbjct: 291 SALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLT---EHITLIDDSYNA---SVPAMKAA 344 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + ++ +G+R +LG+M E+G S + H ++ + + + HV G + D Sbjct: 345 VDLLAQFKQGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLTYGEDAKVISDL-- 402 Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 + ++ D + +I+ +L ++VK + S G Y + N L E + Sbjct: 403 --CGGMHFQSHDSMLEYIERNLIQLNQTSHTLLVKGALSAGMYTIANALKETY 453 >gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK49] Length = 456 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 199/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + +V VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVVEG------AYILVDDVLTAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQSIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++ VL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLVVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVQYFVKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] Length = 473 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 204/476 (42%), Gaps = 23/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G I P V G + IDSR +AP F A G DGHD+ Sbjct: 1 MITL-SLAEIAEIVGGQPHDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAQ 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + + +P VDDV+GAL LA AA R +++A+TGS G Sbjct: 60 -------RAVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAAVERLGTSVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS+NN IG+PLT + + + E+G +G IR+L Sbjct: 113 KTSTKDLIAQLLQRHGPTVWTPGSFNNEIGLPLTALSATAETEHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AHL F E IA AK E+ EGL + G LN DD + ++ Sbjct: 173 TELTPPRIGLVLNVGSAHLGEFGSREAIAQAKGEMVEGLPEDGCAVLNADDPLVRAMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ AD + K + + + V + Sbjct: 233 TKARVLL----FGEAPEADVRGEKVRMTPDGRPVFELHTPTGCSDVTMRLY-GEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 288 LAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTVVNDAYNANPESMRAALR 347 Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L+ Q GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G ++ LLE Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463 >gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] Length = 468 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 122/473 (25%), Positives = 199/473 (42%), Gaps = 21/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T HD I G ++ +S DSR++ + F A+KG +D HDF+ Sbjct: 1 MT-MLTLHDAAALIPGATVIGDGSVAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ V +P D AL LA R R ++A+TGS GKT Sbjct: 60 AARGASAALVSRAGVLP----GLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ + G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASVFAAAVGQDARLSTAGNFNNDIGLPLTLLRLAPAHRLAVIELGMNHPGETGT 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P IA++ H + +E +A A + L G DD + + + Sbjct: 176 LARIAAPTIALVNNAQREHQEFMATVEAVALEHASVIHALGPDGVAVFPADDRYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + ++ + + +EV +G H A+N L Sbjct: 235 --VAATGNRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 + D L F P +GR + R + LID++YNANP SM+AA Sbjct: 293 AATAAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+Q + R+ V+G+M E+G+ +FH ++ I ++ +G Sbjct: 353 IDVLAQCAA----PRVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATGEATREACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + + G V+VK S R+++ L + Sbjct: 409 AYGAAAR--HFDEVGALVAAL-DAAGYGAAATVLVKGSRYTRMERVVDALTNQ 458 >gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine bacterium HP15] Length = 462 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 226/473 (47%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M ++ + + + G + G+S D+R++ P + F A++G ++DGH F+ Sbjct: 1 MMRAFSLAEAKGWLGAQCASGDLASVSFAGVSTDTRTLEPGQLFVALRGENFDGHRFLQQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ KGA +VV+T +L++P V++ L AL +LA A R S A I+AITGS GK Sbjct: 61 AMDKGAVGLVVDTPDT----NLALPQLVVNETLEALARLAAANREESTAAILAITGSSGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEM LS + KT + G+ NNHIGVPLTL + + +G+ ELG S LGEI Sbjct: 117 TTVKEMCAAILSQMGKTLSTKGNLNNHIGVPLTLFGLSPEHQYGVIELGASGLGEIAHTV 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +P +A++T AHL F E I AK EI +G+ G + LN DD F ++++ Sbjct: 177 ALAKPRVAILTNAGEAHLEGFGSYENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRSRA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + + G + + + +++ G V G H NML+ Sbjct: 237 GARRVAGVSRLGAEADY-HAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLA 295 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L A + L+ P +GR + + TLID+SYNANP+SMKAA+ V Sbjct: 296 IAATRELGASDQAIVAGLASVAPVKGRLQVLELSPE---MTLIDDSYNANPSSMKAALGV 352 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ G++IAVLG M E+G + + H ++ + I + G D Sbjct: 353 LA----GRAGQKIAVLGAMAELGAKANALHREVGVCAREHGIDRLITVGPGCEGYADGFG 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLEE 467 S + + + GD V+VK S S R++ + E+ Sbjct: 409 ESTELGL--SHEQAVESAI-----GDKNTPLTVLVKGSRSSAMERVVEGIKEK 454 >gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] Length = 452 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 124/471 (26%), Positives = 211/471 (44%), Gaps = 23/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + A+ +G + +S D+R+I F A+ G +D HDF A Sbjct: 1 MITMM-LSQIADALDAELVGN--DRAIESVSTDTRAIDAGALFVALVGERFDAHDFAAQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GAG ++V+ I +P V D AL +L + +AITGS GKT Sbjct: 58 VESGAGALLVSR-----IVESDVPQLLVKDTKLALGQLGALVHQSCQTPTVAITGSAGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ + + G++NN IGVPLTL R + D+ + E+G +H+GEI + T+ Sbjct: 113 TVKEMVASIMEQKGRVLFTAGNFNNDIGVPLTLLRSTPEDDYAVIEMGANHIGEIAYTTN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+ +A++ +A AHL F ++ + AK EI++GL+ +N D + E + Sbjct: 173 LVKADVALVNNVAAAHLEGFGSLDGVKQAKGEIYQGLKPGSVAIINLDSNGGEYWHS-VL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + +S S F S ++ + + + +G H N L Sbjct: 232 ADKLVKRFSVMDSDADFFAKDISLNSSGEAEFTLVSPVGDVAIKLGIVGQHNVANALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L A+++ L+ +GR LID+SYNA+ +MKAA +L Sbjct: 292 ALALELGANLEMVQSGLAQLSKVKGR---VEVIELNDTIKLIDDSYNASVPAMKAAADLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G R +LG+M E+G+ S + H + E + + HV G A+ D Sbjct: 349 ASFT----GIRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTYGADAKAISD---- 400 Query: 421 SIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + +I+ L + ++VK +NS G ++ + E + Sbjct: 401 ECGGIHFSSHQSMIDYIKQHLAQHQEQQTLLVKGANSAGMSKVATAVKEMY 451 >gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 455 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 125/461 (27%), Positives = 208/461 (45%), Gaps = 34/461 (7%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV---------QKGAGLVVVNT 72 + G+SID+RS+ P F + G H DGH+ + A+ ++G Sbjct: 13 ADAISIQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAAALSKEAAAAFWKRG-------- 64 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + VDD L AL +L+ R + A II ITGS GKTTTK+++ L + Sbjct: 65 ---YPNPPEDAVLIFVDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGT 121 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + + G+ NNHIG+PLTL ++ D + + E+GMS GEI L+ L +P +A+IT I Sbjct: 122 TYRVHKTQGNLNNHIGLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMI 181 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 AHL EEIA AK EI GL+ G N D+ + + + SFG+ Sbjct: 182 GDAHLLQLGSREEIARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQ 241 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + + ++ S +Q + G H N L + L + Sbjct: 242 KSTNNIYPVDIQIGNDGSSFRLQDSDTEFYIPLL--GLHNVMNALAAVTAGRELEVSDEK 299 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L + G R + FT+++++YNA+PA+ KA +S++ Q+ G + Sbjct: 300 IAQGLRD---VQLSGMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQL--KGYRHKY 354 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYN----ISHVWLSGFHVLALKDALPRS---IHVH 425 VL DM E+GEL + FH ++ + + +S ++ G + + ++ + Sbjct: 355 VVLADMLELGELEEQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTY 414 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E + ++ + DVV+VK+S ++N LL Sbjct: 415 WFEDKQAMANALKEVIHPEDVVLVKASRGMKLEDVVNFLLA 455 >gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola] Length = 453 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 212/469 (45%), Gaps = 17/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + G G ++ I I+++ I P F A+ G ++D H FI A Sbjct: 1 MISL-SLKTIASITNGQLYGK--DLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KG ++ + + I V + AL ++A R ++ A I+AITGS GKT Sbjct: 58 IKKGCSAIITHKHI-----KSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM L T + IG+ NN+IGVP+TL ++ + + ELG + GEI ++++ Sbjct: 113 TVKEMTASILRKYGNTISTIGNLNNNIGVPITLLQLNKYHKYAVIELGANQPGEISYISN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I +I I +HL F + ++ AK+EIF GL+ G + +N D F K+ Sbjct: 173 MTQPEIILINNIQYSHLQGFKSLLGVSQAKSEIFSGLKPNGKVIINLDSHHFSKW-KKNI 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K +N++F S + + ++ + +GY N L Sbjct: 232 KNNHVIYFSIKKKQNSNFFSSNITIDSYGTTFVMHTPNGTINISLPFLGYQNISNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L ++ L+ R + + LID++YN+N ASM AI VL Sbjct: 292 ALAFALKIPLNIIQIGLADTPIISRR---LQSIILNPDKILIDDTYNSNVASMITAIKVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G +I V+GDM E+GE S +H + +L +I+ ++ G + D Sbjct: 349 EKMP----GYKILVIGDMSELGENSFLYHRMIGNAANLSDINKIFSIGNISNEITDIFHN 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 H + + ++ +++K S + ++ L++E+ Sbjct: 405 GKHFLHKKDLNKYLKKYFLKKTK-ITILIKGSRNTKMDEVVENLIQEYK 452 >gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 460 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 112/466 (24%), Positives = 198/466 (42%), Gaps = 18/466 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++ + ++ + G+S DSR+I + + G +DG FI K Sbjct: 5 SLGEISRMLKAELCDKAYDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKK 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 A +++ D ++SIP VDD L AL LA A R S II ITGS GKTTTK Sbjct: 65 AAAFLIDKDYKIK-NNISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++L L IG+ NN IGVP T+ + D + I E+G G+I T +V+ Sbjct: 124 DLLYEVLKKKFNVQKTIGNLNNEIGVPKTILSLREDCEVAIVEMGTDSFGDISLTTSIVK 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +HL E I AK EI EGL G N DD + K S Sbjct: 184 PDIALITNIGDSHLEKLKTKEGILKAKMEIVEGLNPEGYFIYNGDDPTIK--KDISLYTI 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SFG++ + DF ++ + + + ++ Y+ G Sbjct: 242 KQKKISFGENDDNDFVVKDVGEKLAKVSFSHDGDVYEIPLLGSHNVYNG--------GAC 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++++ + + + + + + F ++D+ Y +NP S+++ ++ + Sbjct: 294 LLISSLLGLSKEQIKEGLLEVTPANNRSRIIEFDGFDVLDDCYKSNPQSLRSGLNTTKML 353 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + I VLGDM E+GE + H + + + ++ + G + + Sbjct: 354 GGYDNK--ILVLGDMLELGESEKDLHYQVGKEIDPKDVHYCLFFGELSYYMYQGALENFP 411 Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + L ++S + ++ VK S+ +I + + Sbjct: 412 KNRLFHFTSKNDLIDKLKSLITRSSLLFVKGSHGMHMEEIIESISK 457 >gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK115] Length = 456 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 200/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSEHPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTCLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIASYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 456 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 126/476 (26%), Positives = 198/476 (41%), Gaps = 32/476 (6%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN T H++ + I + DSR I P + F +KG DGHDFI Sbjct: 1 MN--LTLHEVAHLVHAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA + P V+DVL A LA A ++K + A+TGS GK Sbjct: 58 AFENGAVATFSEKVVE------GHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+ML LS+ TY G+YNN IG+P T+ MP D + E+G HLG+I L+ Sbjct: 112 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 171 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L P A++T I AHL F EIA K +I +G+ + G + + D L Sbjct: 172 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPENQ 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + D ++ + + + + + G + A N ++ Sbjct: 232 TVVR----------FGPDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIA 281 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + R + + + ++ + YNANP +M+ + Sbjct: 282 AYVALKEGVSEAAIRDSFETLQLTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILET 338 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + GR++AVL DM E+GE S H + LS + V G + L Sbjct: 339 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 398 Query: 420 RS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + HV+Y + + + ++ SL + D +++K SNS +L+ L Sbjct: 399 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLGKLVEELEN 454 >gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK160] Length = 456 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I P F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + ++ G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQKIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSDADIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G ++S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK408] Length = 456 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I P F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + ++ G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQKIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEADIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G ++S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseovarius sp. 217] gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseovarius sp. 217] Length = 476 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 172/475 (36%), Positives = 243/475 (51%), Gaps = 18/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ + A G G V+G+SID+R++ + F A++ DGH+F+ A Sbjct: 1 MS-LWSAQEAAAATGGRVTG---DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V+ V P+ V+DV L L A R RS+A ++A+TGSVGKT Sbjct: 56 LAKGAAAALVSH--VPEGVGGDAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +T+A SYNNH GVPLTLARMPVD F + E+GM+H GEI L Sbjct: 114 STKEMLRDVLRHQGRTHAAEASYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEIAPLAR 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+AVITT+A AHL F IE IA KA IFEGLE G +N D + +L+A++ Sbjct: 174 MARPHVAVITTVAAAHLEAFEDIEGIAREKASIFEGLEPGGVAVINADIATAPILRAEAV 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I SFG ++ A +L + + + + G H A N L L Sbjct: 234 -RHAARILSFGTARGAHHRLLNVELHDRVTVGHARAWRSPLVYKVGVPGRHFAMNALAVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLIDESYNANPASMKAA 356 +V +L D A+ L+ + P GRG R + LID+++NANP SM AA Sbjct: 293 AVVQVLGCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAA 352 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P GRRIA+LGDM E+G + H LA++ + I + G Sbjct: 353 LEVLAAAQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEIHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + AL + L ++ T + L + GDVV+VK S ++ L Sbjct: 413 MRALWEVLSEGRQGRWAATAEDLAAQAHRLIDAGDVVLVKGSKGSRVSLVVEALR 467 >gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] Length = 463 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 204/469 (43%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + + + G Q I+ D+R+I E F AIKGP++DGH F+ A Sbjct: 1 MIPM-DLNWIASVLAVSFEGQNQQVL--NINTDTRTIKAGEVFLAIKGPNFDGHKFVEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+V+ + + +P F V D AL KL A IAITGSVGKT Sbjct: 58 VAQGAVAVIVDHSV-----KVQVPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM LS + A G++NN IGVPLTL R+ + + ELG +H+GEI + T Sbjct: 113 TVKEMCAAILSQHGEVLATKGNFNNDIGVPLTLLRLEPKHQYAVIELGANHIGEIAYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +AV+ +A AH+ F ++ +A AK EIF GL+ G +N D + + Sbjct: 173 LVKPDVAVVCNVAAAHIEGFGSLDGVAQAKGEIFSGLKAGGIAVINADSPYVDYWLTSLD 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + K + + ++++ G N+ L Sbjct: 233 KSTLCQFSMSQQLDVWPENIHLDKLGRAGFDLCTPTERIAVQLPIAGKH-----NITNAL 287 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ T R T+ID++YNAN S+KA I +L Sbjct: 288 IACALTLPLGVTLAHVAQGLASMPMVQGRVNLIEVNDSLTVIDDTYNANVQSVKAGIDLL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 QI EG +I GDM E+G ++ +H ++ I + G D + Sbjct: 348 GQI----EGHQIFAFGDMGELGADARQYHEEVGLYAQQKGIDTFYSLGVLSRYASDVYQK 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV--DG-DVVVVKSSNSCGFYRLINLLLE 466 + + + L I + + +G ++VK S S L+ ++ Sbjct: 404 A--GLHFSSRQQLLAAILNDIAHVEGPITILVKGSRSSRMELLVQDIVA 450 >gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 457 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 111/463 (23%), Positives = 206/463 (44%), Gaps = 15/463 (3%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + ++G ++NG+SID+R+I + + I G ++GH+FI A+ GA Sbjct: 6 LNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + I ++ P V+D L A+ LA A R + II ITGS GKT+TK++ Sbjct: 66 TATLWDKNQ--PIPNIDFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDI 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L ++ KT+ +G+ NNH+GVPLTL M + + + E+GMS LGEI L+ + Sbjct: 124 LFNILQTVYKTHKTLGNLNNHLGVPLTLLEMAENTEIAVIEMGMSGLGEIELLSKIASSD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+IT H+++ +E I AK EI EGL+ G D + K + Sbjct: 184 VAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLFIYFGDSPPLRVGVEKLDLK--Q 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG +++ D+ ++ +E + E+ + + + Sbjct: 242 KKVTFGINRDNDYTVKLISSENEGIYFELVGSDSPRLFLSMLGNHQIYNAAAA-----IA 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ + K + F ++++SY +NP S+++ + + Sbjct: 297 VAQYFNITLEKIQEGMLKIEATGMRNELIKCNGFDILNDSYKSNPISLRSVLDTMYSFKK 356 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + + I VLGDM GE + HID+ E + I +V+ G Sbjct: 357 YKQK--IVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVFTIGELGKYFAQGAKTRFPDE 414 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V L ++ + +V++K S ++++ L Sbjct: 415 RVFSFMDKSSLTTKLKEMIKKDAIVLIKGSRILELEKVVDELK 457 >gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] Length = 468 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] Length = 468 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] Length = 468 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] Length = 471 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 123/472 (26%), Positives = 201/472 (42%), Gaps = 13/472 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + + D + I P + + IDSR + E F A+KG DGH ++ Sbjct: 1 MKGVLSVEDF-RGIGDVVTHGSPLLTITAPVVVIDSREVKGGELFVALKGERTDGHCYVS 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + Q+GA V+V+ + GS P DD + L +LA R ++AI Sbjct: 60 NVFQQGASWVMVSREWYEKEGSPQPPEGKGFIVTDDPVSGLQQLASCYRKTFSIPVVAIG 119 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTKEM+ L++ G+ NNH+GVPLTL ++ D + E+G++H GE Sbjct: 120 GSNGKTTTKEMVASVLATGFTVQMSQGNRNNHLGVPLTLLQLRPDTGIAVVEVGINHPGE 179 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + LT + RP ++T I HL ++ +A+A+ ++F L+++G D Sbjct: 180 MEELTAIARPTHGLLTNIGHEHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNGDD--SR 237 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+A AL IY + R C + V E V Sbjct: 238 LRAAGEALEGPVIYGTADLPGRICRARDISVCRDGRISFVLCSADRTEPVTLNFTGKHNV 297 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 + V + + I+ + G + ++ G +++++YNAN SM+ Sbjct: 298 INAVAAAAVGLHFGLPLSRIR-EGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMR 356 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AI L + EG+RIAVLGDM E+G H + + + +++ G + Sbjct: 357 LAIDALCDLP--CEGKRIAVLGDMLELGAAGDVEHESIGRYIHGSRVDLLYVYGEKARLI 414 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P S H T + L + + DGD ++ K S R++ L+ Sbjct: 415 CRESPGSCQGH-FSTHEELLEALLEGVHDGDAILFKGSRGMKLERVVESLIN 465 >gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] Length = 472 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 18/466 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 D++ A G + ISIDSR++ + F AI+G +DGHDFI + +GAG Sbjct: 2 SDVIAATGGELVQGKGNEMFENISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGG 61 Query: 68 VVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+++ + I + V D + AL LA R + AITG+ GKT+TK Sbjct: 62 VMIDQAHASRINTPRATGRGARVVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM + + A G++NN IG+PLTL R+ I E+GM+ GEI L + Sbjct: 122 EMAAMVCGRRYRVLATTGNFNNEIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICE 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + V+ + HL I+ +A AKAE+ E L T +N DD + K Sbjct: 182 PDMGVVLNVGAGHLEGVENIDGVARAKAELLEALTDKDTAIVNADDMRVMKMAQKVRG-- 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLG 301 + ++G + AD ++ + ++ L + + V G M N L Sbjct: 240 --RVVTYGMRQKADITAASVRRQDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAA 297 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + L L F P GR + FTL+D++YNANP SMKAA++ L Sbjct: 298 IGAGLGLSAPEIKAGLENFSPVPGRMTITQTRAG---FTLVDDTYNANPESMKAALAGLR 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ G G I ++GDM E+G+ + H + + + ++++G A+ + Sbjct: 355 ELKGAGRG--ILIMGDMFELGDHAPVMHGKTGVMAAESGVDRLYVTGEFAEAVAGGAAAA 412 Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E+ + + + L GD V+VK S ++ L Sbjct: 413 GMTPEKIMIESKETIIEAVCPVLEPGDWVLVKGSRGMRMETVVQAL 458 >gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 464 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T +++ + IG V S D+R FFA+KG ++D H ++ +A Sbjct: 1 MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++G+ VVV + +S+P V D AL +LA + + +A+TGS GKT Sbjct: 59 VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + G+ NN +GVP+TL R+ F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F +E +A AK EI+ GL+ G +N + + K Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 H L + + ADF + S + +E+ +G H N Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR ID++YNAN SMK+ Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL RI +GDM E+G+ S++ H +A+ + N+ V G + Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ Q +V++ K S S LI L Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLIFAL 456 >gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] Length = 448 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 128/467 (27%), Positives = 189/467 (40%), Gaps = 20/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T D+ +A G IG +N + D+R I F A+KG +DGHD+I A Sbjct: 1 MLINLTLSDIAKACDGELIG--EDCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQ+GA VV + + V D A +A R K ++ ITGS GKT Sbjct: 59 VQEGAVGVVSDRVVDVPN------YVKVFDTTLAYGVIARLIRDAFKGPVVCITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K+ L +L+ + NN IGVP TL + D D + E G S GEI L Sbjct: 113 TVKDWLAQSLTDKNVLKTR-ANLNNQIGVPQTLLELDADNDVAVIEAGTSFTGEIPLLAK 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P I V+T +H GIE+IA K + G ++ LN DD +F+ Sbjct: 172 VAFPDIVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNASVVLNSDDEYFDYW---CG 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + +YSFG +++AD + +E S G + V G G H + + Sbjct: 229 LAGDRQVYSFGFTESADLYASDIELGAESSLAMFHYDGMAQLVTIAGAGKH---QIANGM 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +V + +A R + LI++ YNA+P S++AAI VL Sbjct: 286 AVVLAMLIIGIDFKQAADKLASPVLVSGRLERLKTKNGALLINDCYNASPKSVEAAIDVL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419 S S +LG + E+G H L IS + G A Sbjct: 346 SIQSVEE---TWLILGGLAELGAQRDDIHHSLGIYAKNKGISCLICVGPVASIAGAAFRS 402 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + Y T + ++ L ++VK S S +I L+ Sbjct: 403 KGGNAIYCNTHNEAATVVRP-LDKKHAILVKGSRSAKMENVIEALIN 448 >gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] Length = 468 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] Length = 467 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 11/447 (2%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 Q + + D+R + P F + G DGH +I A+ GA + + D A S Sbjct: 22 DRQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSAD-PAQAPSD 80 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V VDD L AL LA R ++ +TGS GKTTTK+M + L + + + G Sbjct: 81 DLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHKTQG 140 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNN IG+P TL +MP D + E+GMS GEI+ L+ + +P IA IT I +HL Sbjct: 141 NYNNEIGLPYTLLQMPEDTQVAVIEMGMSDFGEIKQLSEIAQPDIAAITLIGESHLEFLG 200 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 IA AK EI GL+ G + ++ E + SFG + +AD Sbjct: 201 SRAGIAQAKLEILYGLKPNGVLLYPANEPLIES--EMPEIDQPIYLRSFGFTDHADAFAY 258 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + ++++ + L+ ++ +G + N L+ L + +L ++ AI L+ F Sbjct: 259 DMVEEVDRTYFKTNLE-PNVTCTIPVLGAYNVSNALIALSVAELLDVPLEQAIFQLANFQ 317 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 R L++++YNA+P S+ A + L+ ++ RRIAVLGD+ E+ Sbjct: 318 LTANR---LEWLTTHQGARLLNDAYNASPTSVLAVLKSLAALNLAPGQRRIAVLGDVREL 374 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS----ETMDGLFLFI 437 GE S H LA+ L+ + V+L G + +L + L + L + Sbjct: 375 GEASAQLHRSLAQGLAPESFERVYLFGPEIASLYETLQDRYEASHLFYEPADHSRLIAQL 434 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 Q+ L D D+V+VKSS +++ L Sbjct: 435 QADLTDKDLVLVKSSFGTDLLQVVTAL 461 >gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] Length = 468 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHTLGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] Length = 468 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK72] Length = 456 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 203/470 (43%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYLLVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL + G + + D E L Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRENGLLIVPADKIVNEFL------PTGC 231 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + FG D + + ++ + + + G + A N ++ Sbjct: 232 DLVRFG----PDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G ++S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta thermophila DSM 6578] Length = 470 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 208/479 (43%), Gaps = 26/479 (5%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P + L + + + + ++IDSR F ++G DGH ++ A Sbjct: 7 PALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAF 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPV--------FGVDDVLGALNKLAVAARLRSKATI-IA 112 Q+GA +V + + GS + V D L AL L + I I Sbjct: 67 QRGASAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIRIG 126 Query: 113 ITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 +TGS GKT+TKEML LS + +A G+ N+ IGVPL++ + + + I E+G+ H Sbjct: 127 VTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDH 186 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GE+ L +V+P++AV+T I AHL F E IA KA+IF + F+ D+ F Sbjct: 187 VGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEF 246 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 F +L + + ++ + V L K + + G G H Sbjct: 247 FHVLVE---------GWRGTFLPYGPATVEGFEGWESRGLEGVILLWKGLRIPLQGYGEH 297 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 M +N L + + L + L + P GRG+ + + YNANP Sbjct: 298 MVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELKEIGGVW----FLVDCYNANPE 353 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+A++ + + I VLG M E+G+ + S H L + L+ Y V L G + Sbjct: 354 SMRASLEGVRGLKGVRRR--IVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEM 411 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 A L V + T++ + S + +GD+V++K S + G R+I + A Sbjct: 412 EAAFAVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQDFEGRYHA 470 >gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] Length = 478 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 119/470 (25%), Positives = 194/470 (41%), Gaps = 21/470 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP++T H+ I G ++ +S DSRS P + F AIKG +D HDF+ Sbjct: 6 NPMFTLHEAAALIPGATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + +V S +P+ V D L LA R + ++A+TGS GKTT Sbjct: 66 ARNVSAALVARVPDGWDVSA-VPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTT 124 Query: 122 TKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ + A +G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 125 VKEMIASIFAAAVGANERLATVGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 184 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +A++ H + +E +A A + L G +D++ + + Sbjct: 185 AKIAEPTVALVNNAQREHQEFMATVEAVALEHASVIHALNPEGVAVFPANDAYASIWR-- 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I F + + + ++ + EV +G H A N L Sbjct: 243 -VAATGNRIVDFALNTAERTTAAAVTGRFDGKRLSIETPEGAFEVTLQVLGDHNAHNALA 301 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAI 357 +D + L F +GR + + T+ID++YNANP SM+AAI Sbjct: 302 ATSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDTYNANPDSMRAAI 361 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + R+ V+GDM E+G+ FH ++ I ++ G A Sbjct: 362 DVLASHAS----PRVLVMGDMGEVGDHGPEFHREIGAYAKERGIDALYAMGDASRDACTA 417 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINL 463 H+ + L +Q G ++VK S R+++ Sbjct: 418 YGAG--AHHMADVGTLVAQLQ---QAGYGAAATLLVKGSRFMQMERVVDA 462 >gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] Length = 457 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 205/466 (43%), Gaps = 29/466 (6%) Query: 10 LLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L+ + ++GI + GI+ D+R++ P + F A++G +DGH++ AV+KGA Sbjct: 10 LVDILAAKTVGIPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGAL 69 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ + + +P+ V++ L A ++A R + + +IA+TGSVGKTTTKE++ Sbjct: 70 TVIAEATNASQLE--GLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELI 127 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ +YNN IGVP TL + D D+ + E+ M G+I LT + P + Sbjct: 128 AAVLSTKGTVLKTQANYNNEIGVPKTLLELTPDHDYAVIEMAMRGSGQIAELTEIANPTV 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 VIT + AH+ E IA AK E+ + G LN+D+ A+ T Sbjct: 188 GVITNVGTAHIGLLGSTEAIAKAKCELLAHMSNNGVAVLNHDNQRLIDTAAQVWQGQTLT 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 G Q L+ + ME G H A N L L I +L Sbjct: 248 YGLEGGD------------VQGQLIAPEILKVEGMEFPIPLPGRHNALNYLAALAIGKLL 295 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D +T L+V P + ++DE+YNA SM ++ L ++ Sbjct: 296 GVDWETLRNGLNVELPPGRS----QRYELPNDVVILDETYNAGVESM---VAALEMLAQT 348 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGF---HVLALKDALPRSI 422 R IAVLG M E+G S H + + + N+ + L A+ + S+ Sbjct: 349 PGKRHIAVLGAMKELGTQSGELHQQVGQKVEQLNLDGLRILVDESDPEAEAIATGV-TSV 407 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 V + L + + GD ++ K+S+S G +++ F Sbjct: 408 PVESFCDSNPLVEHLLEFVQPGDRLLFKASHSVGLDQVVKQFKAGF 453 >gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei NCTC 13177] gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] Length = 468 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F A + S + + G ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + L F P +GR + R A T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G D Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A H+ + + + ++ ++VK S R+++ L E Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 456 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + + +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + S+P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI F Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D F + + ++ Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + +V + +G H N L Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ S GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 456 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + + +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + S+P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI F Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D F + + ++ Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + +V + +G H N L Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington] gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl ligase [Rickettsia typhi] gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington] Length = 448 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 142/463 (30%), Positives = 232/463 (50%), Gaps = 17/463 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ N + +S+ + + F A++G DGHD+I A Sbjct: 1 MI--WNSKTLSIALGIEISH---SVNCNAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ + + + V+D AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGATAVIVSKQVEINDKD---KIILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE L I L +A G++NN++G+ + LA M D ++ IFELGM+H GEI L Sbjct: 112 STKEALKILLQHDFIVFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHKGEISELVQ 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+I+ I+ AHL F+ IEEIA AK EIF+ K +N ++ + + + Sbjct: 172 ILKPNIAMISNISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILK 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L I IYSFG+SK + +L +K EQ ++ + K +++ I H A N L Sbjct: 232 NLSITNIYSFGRSKAS-AELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFANNYTGVL 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ IL I+ + + K +N +I + YNA+P SMKAA+ L Sbjct: 291 LIIDILG----KDIEIAANYLADISITKGRGEIINIQNSRVICDYYNASPQSMKAALEYL 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q+ + +++G+M E+G SQ H +L + + V+L G + + D LP Sbjct: 347 KQVPADNK---TSIIGEMLELGWNSQRLHEELVPYILDSGCTKVYLIGAYTKYIYDLLPT 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 I + + ++ + I +++++K S ++++ Sbjct: 404 KISKKFFKNVEEFIMHITDLFEYSELILIKGSRGVKLDKIVDY 446 >gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] Length = 482 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 118/471 (25%), Positives = 192/471 (40%), Gaps = 20/471 (4%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + P G+ IDSR++ P F A G DG+ F A++ GAG VV Sbjct: 9 LQSTTGARFVAGDPDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVV 68 Query: 70 --VN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++V + +D L +LA R R + T+I ITGS+GKTTTK++ Sbjct: 69 MTCEPTRELVDLALEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDV 128 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L+ + +A G++N+ IG+PLT+ P D + E+GMS GEI L+ +P Sbjct: 129 LAACLAKRYRVHATAGNFNSLIGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQPT 188 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--------KTGTIFLNYDDSFFELLKA 237 +IT + +H+ E IA AKAEI G+ + L+ +D F + Sbjct: 189 FGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFIIE 248 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G S + D + + + ++ Sbjct: 249 NFARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQ-SVP 307 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L ++ + F + G+R + +ID+SYNA+P SM A + Sbjct: 308 NALFAAAVAHRLGVPGFEIDEAFGELQMTGRRTQVRHAACGARVIDDSYNASPESMAAGL 367 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416 ++ S + G RIAVLG+M E+G+ ++ H + + S + G + + D Sbjct: 368 NLFSTLP--CTGSRIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARVMAD 425 Query: 417 ALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 A V + D L + + D+V+VK S G R + Sbjct: 426 AARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLVKGSRFVGLDRFVEE 476 >gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halorhodospira halophila SL1] gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Halorhodospira halophila SL1] Length = 450 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 189/464 (40%), Gaps = 26/464 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+PL + + IG G V G+++DSR F A+ G DGHDF A Sbjct: 1 MDPL-SLEQIAALTGAELIGNGG-GAVTGVALDSRRATSGSLFVALPGARCDGHDFADDA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA V+ + A +P V+D AL L R RS ++A+TGS GKT Sbjct: 59 AARGAVAVLGTRPVGA------LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE+L L+ T A G+ NN +GVP L R+ F + E+G + GEI LT Sbjct: 113 TVKELLAAMLAESGPTLATEGNRNNLLGVPEMLCRLGAGHRFAVIEMGANAPGEIAQLTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P + V+T PAHL F ++ +A AK E+F+GL + G LN DD F L + Sbjct: 173 WAQPDVGVVTNAGPAHLEGFGSLDGVARAKGELFQGLPRQGVAVLNADDDFCGLWRE--- 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + +FG AD + + + +++ + G Sbjct: 230 MAGARRCLTFG----ADAGQFRHRGHGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAAC 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A + + P R L+D++YNANPAS++AAI + Sbjct: 286 AAALEVPARTILDRISSAAAVP-----GRLELRRGDHGGWLVDDTYNANPASLQAAIDTV 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +LG M E+G + +H + +W G +A Sbjct: 341 TGFQAAP----WLLLGAMGELGAETAEWHSRAGRRARAAGVERLWTLGEAAAPAAEAFGE 396 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L ++ L VV++K S S R+ L Sbjct: 397 GGRC--FDNASALIEACRAELPADAVVLIKGSRSAAMERVAAGL 438 >gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] Length = 448 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 144/472 (30%), Positives = 211/472 (44%), Gaps = 30/472 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L L+Q I G V G SIDSR++ E F AI+G ++DG ++I Sbjct: 1 MIALK-VSKLIQVIDGKIKQKQLEEDEEVFGFSIDSRTLRKNEIFIAIQGENFDGSNYID 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A++KG+ ++ ++ S V + L K+A IIAITGS G Sbjct: 60 VAIKKGSSWIITSSKNHKSN-----RCIYVKNTKETLCKIASYLVGEVSPKIIAITGSNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTTTKEM+ L G+ NN IG+PLTL + + + E+GM+H EI Sbjct: 115 KTTTKEMVANILYQHYPKNEILVTKGNLNNDIGLPLTLFNLKKNHTIVVLEMGMNHQDEI 174 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L + P IAVIT I AHL NFS IA AK EI G +K G L DD +F L Sbjct: 175 TKLCKIAPPDIAVITNIGEAHLENFSSKNGIAKAKKEILLGAKKNGIAILPRDDVYFNYL 234 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 K+ L SFG +KN++ + + S + + + + + +G N Sbjct: 235 KSDCLYL---RCISFGINKNSNIR-------LDLSSKVLTVDEEKINIESSLLGKENLMN 284 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 M + + + L +T IK + EGR + +ID++YN+NP+SM Sbjct: 285 MAAAVSVANALELPTETIIKGMKTIDSIEGR---LEVKITASNIKIIDDTYNSNPSSMMM 341 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI VL Q I ++GDM E+G LS+ +H D+ + NI V G L Sbjct: 342 AIDVLDQFKQKK----ILIVGDMAELGPLSKKYHTDIGHYILEKNIDLVMGIGNMTKYLI 397 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 D L + + + L L VV+VK S +++ + E+ Sbjct: 398 DVL--GTKGLWYPSKEDLLNETNKILKKDTVVLVKGSRFMRMEEIVDGINEQ 447 >gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] Length = 449 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 191/470 (40%), Gaps = 28/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +T + P + DSR I F + G DGH+F A Sbjct: 1 MN--FTVKEAAAVFGQQIENETP---FASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + + + I V V D + A +LA A + + II ITGS GKT Sbjct: 55 KDNGAIATLWSHPTIE--PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ ++ +TY G++NN +GVPLT+ P D I E+GM H GEI L+ Sbjct: 113 TTKDMVEAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L P A IT I AH+ N E IA AK EI GL+K G + D+ E Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G + E+S + +G + +N L+ + Sbjct: 233 QTIETFGLTEGDLQGD---------IVEESQDQTIFTVAGTTFTLPVLGGYNVKNALIAI 283 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GI + + L+ F + R + ++ + YNANP +M + Sbjct: 284 GIGRHFGVADEAIKEGLAHFQLTKNR---TQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416 ++ GRRIAVL DM E+G S H +A L V+L G + AL+ Sbjct: 341 RKLPL--AGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAN 397 Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 AL + + L + +L D +V+K SN G +++ L Sbjct: 398 TALADKVRYFAIDEKPQLIASLIETLEPSDSLVIKGSNGMGLSEVVDALK 447 >gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 456 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLTTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIINEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + ++ + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEERIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDIEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y + + L ++ L D V++K SNS +L+ L + Sbjct: 405 KVQYFIKNDEKDQFEQLKQAVREKLTPADQVLLKGSNSMNLAKLVEDLED 454 >gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingopyxis alaskensis RB2256] gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingopyxis alaskensis RB2256] Length = 459 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 239/468 (51%), Gaps = 17/468 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PLWT + QA G V+G++ DSR + + F A+KG + DGH FI A+ Sbjct: 3 TPLWTARTIAQATGGI---ASADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKAI 59 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +V T ++ P V D ALN L A+R RS II +TGS GKT Sbjct: 60 AAGAAGIVCET-------AIDHPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKTG 112 Query: 122 TKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TKE L AL + + + SYNNH+GVPL+LARMP DFGIFE+GM+H GE+ LT Sbjct: 113 TKEALFAALDRFRPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGELAALT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+A++TTIAPAH+ F E IA AK EIFEGLE GT + +D + L+AK+ Sbjct: 173 RIVRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGTAIIPFDSPHYARLRAKA 232 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + SFG ++ AD + W S + Q+Q + G H N L Sbjct: 233 EQHAAHIV-SFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVANSLA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V + D+ A A + GRG R+R A+ G +IDESYNANPASM + Sbjct: 292 VLAAVKAVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASM---AA 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + Q++ R++A+LG M E+G +++H LA L + L G + L AL Sbjct: 349 TIGQLAGESADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFALLVGEEMAPLAKAL 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I + + + GD V+VK SNS G ++ L+ Sbjct: 409 EGRIDFAHVPAHPDATARLGGLIRPGDAVLVKGSNSVGLSHVVTALIN 456 >gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] Length = 453 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF+ A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VAGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] Length = 449 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 124/467 (26%), Positives = 191/467 (40%), Gaps = 19/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ G +G V + D+R + AIKG +DGH ++ A Sbjct: 1 MLVELKLSEIASICNGSLLG--EDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ GA V+ D P+ VDD A +A R ++AITGS GKT Sbjct: 59 LKNGALAVLSQQDSQVR------PLVLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE L+ L+ K + NN IGVPLTL + + + E G S +GEI L Sbjct: 113 TIKEWLSQCLAERVKVLKTEKNNNNQIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IA+I+ + +H F IE IA K + GL G LN+DD +F+ Sbjct: 173 ITTPDIAIISNASGSHYEGFGSIEGIAKEKGALLTGLTAEGVAILNHDDPWFDYWVGLLD 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 SFG AD ++ + S+ S + QG+ + G H + + Sbjct: 233 KRA---CVSFGFGSGADLVAKQVELFSQSSKSILCYQGEEYVLHLAVPGKH---QVANAM 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L T A KR ++++ YNA+P S++AAI VL Sbjct: 287 AVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQALVLNDCYNASPKSVEAAIDVL 346 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419 +G++ VLG + E+GEL + H L E + ++ + G A Sbjct: 347 M---SQSQGQKWLVLGALGELGELEEKIHQQLGEYAAFAGVTGLISVGPIAAIAAKAYEE 403 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 R Y E FI+ + ++VK S S ++I +L Sbjct: 404 RGGVAVYCENNLQAAEFIKPLGKEN-AILVKGSRSAQMEQIIKVLEN 449 >gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 456 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + + +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + S+P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI F Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELASEHSAAVIELGASRVGEIAFTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D F + + ++ Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + +V + +G H N L Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 459 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 124/471 (26%), Positives = 190/471 (40%), Gaps = 16/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHDFILH 59 M PL + + A G PQ V G++ DSR ++P + F A++G DGHDF Sbjct: 1 MQPL-SLAQIAAAAGGQVSDADPQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPS 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 AV+ GA V+ L +P VDD L AL A A ++A+TGS G Sbjct: 60 AVRAGAVAVLAARP-------LDVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS+NN IG+P+T D + E+G G I +L Sbjct: 113 KTSTKDLIAQVLQRAGATVFTQGSFNNEIGLPITALEATADTRHLVVEMGARGQGHIAYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + P I + + AH F G E A AK E+ E L + ++ + A Sbjct: 173 TQITPPRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAA- 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + +FG ++AD + L + + Q Sbjct: 232 MSARTKARVVTFGVERSADVYATDVTLDGQG-RASFTLHTPTGDAPVRLQVVGEHQVPNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 A +D A ++ + R R T+++++YNAN S AA+ Sbjct: 291 LAAAAVAEAAGMDAAQIGKALTAAESLSEGRMRVTERPDGVTVVNDAYNANADSTAAALR 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDA 417 L+ + GR IA+LG+M E+G S H + + ++ I + G L Sbjct: 351 ALAHLGRERAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLVAVGEGDARVLATE 410 Query: 418 LPRSIHVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V T ++ + GDVV+VK SN+ G L + L Sbjct: 411 YGPDGRVE--ATKAAAGEWLSRYNFRAGDVVLVKGSNALGLGELADALAAR 459 >gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter aurescens TC1] gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter aurescens TC1] Length = 496 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 135/477 (28%), Positives = 207/477 (43%), Gaps = 19/477 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T ++ G G P + DSR + A G H DGHDF+ A Sbjct: 1 MIAL-TAAEIADITHGRLTG-DPDIVPTSVVTDSRESTHGSLYVAKPGEHADGHDFVDAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---------KATII 111 ++GA LV+ ++ + G P V+D + A+ LA + R T+I Sbjct: 59 FERGAVLVLGEREVTDADG-RPFPAVVVEDAVLAMGALAAESVRRIRAERASRGEDFTVI 117 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKTTTK++L LS+ T A GSYN +GVPLT+ F + E+G + Sbjct: 118 GITGSAGKTTTKDLLAGVLSTAGATVAPQGSYNGEVGVPLTVFAADATTRFLVIEMGATG 177 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 LG I++L +V+P I V+ + AH F G+E IA K E+ E L + GT +N DD Sbjct: 178 LGHIKYLAEMVKPDIGVVLVVGTAHAGEFGGVENIAKTKGELVEALSEHGTAVINLDDGR 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++A++ A + S ++ + + ++ L V Sbjct: 238 VAAMRARTKAKVLGFTSSPATTEEVEARNV-VVNGQGFPDFDLVLPDGGPAVEVRSRLIG 296 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + + A + A A S+ R T+I+++YNANP Sbjct: 297 GHHVTNLLAAAAAAFAAGIPAADIATSLSSQSAASRWRMERTERADGVTIINDAYNANPE 356 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+AA+ L+ + R AVLG M E+GE S H + + NIS + + G Sbjct: 357 SMRAALRSLADLGQ--GRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREA 414 Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 AL ++ET++ + +Q L GD+V+ KSSN G L + + Sbjct: 415 RALYISAIQEGSWGDECSFTETVEEAYELLQRELEPGDLVLFKSSNGVGLRHLGDRI 471 >gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] Length = 458 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 131/466 (28%), Positives = 204/466 (43%), Gaps = 21/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L AI G + ++ D+R + P F A++G +DGHDF A Sbjct: 1 MIA-TTLRTLADAIGATLYGD--DAPLAAVTTDTRKLTPGCLFIALQGESFDGHDFAARA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ + L +P V D AL +LA R + A ++A+TGS GKT Sbjct: 58 CEAGAAALLVSRRL-----PLGVPQLLVADTRLALGQLAAWVRSQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L+ G+ NN IGVPLTL R+ DF + ELG +H+GEI + Sbjct: 113 SVKEMSAAILAQCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH A++ +A AHL F + +A AK EIF GL GT +N D + ++ + Sbjct: 173 LTRPHSALVNNLAAAHLEGFGSLAGVARAKGEIFSGLPAQGTAIINADSNDWDNWQQALP 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S DF + + + + + + V G H N L Sbjct: 233 TQRVWR-FSPQAGSGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLPLPGRHNIANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + L+ H GR R L+D+SYNAN SM AA VL Sbjct: 292 ALTMSVGASLTQVRQGLAGLHAVPGRLYPIRL---GEQQLLLDDSYNANVGSMSAAAEVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + G R+ V+GDM E+G +++ H + E I V G + +A Sbjct: 349 GAMP----GYRVMVVGDMAELGVEAEACHRRVGEAARAAGIDKVLSVGGLSRLIGEA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLL 464 S + + ++ L + ++VK S S +++ + Sbjct: 402 SGCGEHYMDKGAVIERLKHLLCEHAAITILVKGSRSAAMEQVVRGI 447 >gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 456 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 121/476 (25%), Positives = 202/476 (42%), Gaps = 32/476 (6%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M +++ + + + + DSR I + F +KG DGH+FI Sbjct: 1 MI--LDLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIGSGDLFVPLKGAR-DGHNFIPT 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A +GA + + VDDVL A +LA + + ++A+TGS GK Sbjct: 58 AFAQGAAATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+ML L++ KTY G+YNN IG+P T+ MP + + + E+G HLG+I L+ Sbjct: 112 TTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTILHMPENTEKLVLEMGQDHLGDIHLLS 171 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +P ++T + AHL F EIA K +I +GL K G + + D E L A Sbjct: 172 ELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADC 231 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + D + + + + + + G + A N ++ Sbjct: 232 KLVR----------FGPDSDIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIA 281 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +A S R + + + ++ + YNANP +M+ + Sbjct: 282 AYAALQEGVSEAAIAQAFSELELTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILET 338 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 S I + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 339 FSTIPTNPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAK 398 Query: 420 R---SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y + + L ++ L D +++K SNS +L+ L + Sbjct: 399 EIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 476 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 161/476 (33%), Positives = 246/476 (51%), Gaps = 18/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT H + A QG + G G+SID+R++ P + F A+K DGHDF+ A Sbjct: 1 MTALWTAHQAVAATQGVTQG---DWVATGVSIDTRTLQPGDLFVALKDVR-DGHDFVAMA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA +V+ + P+ V DVL L L +AAR RS A I AITGSVGKT Sbjct: 57 LEKGAAAALVSH--RPDGVASDAPLLVVPDVLKGLEALGIAARARSTARIAAITGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS K +A SYNNH GVPLTLARMP D DF + E+GMS+ GEI L+ Sbjct: 115 STKEMLRTVLSRQGKCHAAEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+A++TT+A AHL++F + IA+ KA I +GLE G LN D + +L+ ++ Sbjct: 175 MARPHVAMVTTVAAAHLASFESLAGIAAEKATIVDGLEPGGIAVLNGDVATTAILQDRAG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G + + + ++ + + + + G G H N + L Sbjct: 235 DIGAQIVLFGETAGAW--RISDLRISRDVTVIGATSPGHDYLFKLSVPGRHFGLNAVGVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 +V+ L AD A L+++ P + A L+D+++NANP S+ A+ Sbjct: 293 AVVAALGADPVAASLDLALWVPPAGRGTREIIQLDLANEFETIDLMDDAFNANPTSLAAS 352 Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + V++ P +GR+IA+LGDM E+G + H +A+ L + + +G Sbjct: 353 LEVIAAGQPQDGVGRIVKGRKIAILGDMLELGTDEVAMHAAMAQNPHLQQLDLIHCAGPL 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L +ALP+ ++ T L + GDVV+VK S +++ + + Sbjct: 413 MRHLWEALPQGKRGQWAATAAELAAQATRLVDTGDVVLVKGSKGSKVSLVVDAIRK 468 >gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] Length = 459 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 213/470 (45%), Gaps = 23/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ + + Q G + V+ IS D+R++A F A++G +D H F+ Sbjct: 1 MIPM-SLAQIAQVTDGQLLNCPDATQTVSHISTDTRTVAAGALFLALQGERFDAHQFVAQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AV KGA VV+ + +SIP V D AL ++A R + I+AITGS GK Sbjct: 60 AVAKGAVAAVVSRP----LADVSIPQILVADTRIALGQIAAWVRAQLDLQIVAITGSCGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEM L A G+ NN IGVP TL R+ D + + ELG +H GEI + T Sbjct: 116 TTLKEMCAAILQQAAPVLATQGNLNNEIGVPQTLLRLTPDDRYAVVELGANHPGEIAWTT 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LV+P +AVI +A AHL+ F + +A AK EIF GL +GT +N D F++ + Sbjct: 176 SLVKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSGLSDSGTAVINADSEFYDWWREIL 235 Query: 240 HALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297 +SFG ++ ADF+ Q + +++ G H N L Sbjct: 236 ----SVRTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQIDIQLPIPGLHNVSNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L + L+ P +GR + + + TLID++YNA+ S+ AAI Sbjct: 292 AAAAVTTSLGLSLVQVQSGLANMLPVKGRFCVQKLSDD---LTLIDDTYNASVQSVMAAI 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + G R+ GDM E+G + H + E L + V+ G +A Sbjct: 349 DTLAVMP----GYRVLAFGDMGELGADAADLHRQIGEHARLKKLDAVFTVGELSRHTAEA 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLL 465 S + D L+ +Q+ + ++ K + S ++ + Sbjct: 405 AAAS--GQHFANKDSLYQALQTLMQHQRPMTILAKGARSARMEEVVAFVK 452 >gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] Length = 474 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 122/477 (25%), Positives = 188/477 (39%), Gaps = 22/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L T ++ G +P V + IDSR + P F A +G H DGHD+ Sbjct: 1 MIAL-TLAEIADITGGRPH-DIPDPSVRTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYA 58 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 V V + + +P V DV AL LA R ++A+TGS Sbjct: 59 G-------RAVAAGAVAVLAARPVGVPAIVVPDVEKALGALARTVVERLGTDVVALTGSA 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK+++ L T GS NN IG+PLT + + + E+G +G I + Sbjct: 112 GKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGLPLTALKATAETRHLVLEMGARGIGHIAY 171 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT L P I ++ + AH+ F G E IA AK E+ E L + +LL Sbjct: 172 LTGLTPPRIGLVLNVGTAHIGEFGGREAIAQAKGELVEALPSEAEG-GVAVLNADDLLVR 230 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A FG++++AD + + + V + Sbjct: 231 AMSARTKARTVLFGEAEDADVRATEVRMTPAGQPSFTLHTPTGCSDVTLRLY-GEHHVSN 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + A ++ R + T+++++YNANP SM+AA+ Sbjct: 290 ALAAAAVAHVLGMPAEEIATALSGAGTLSRWRMEVTEREDGVTIVNDAYNANPESMRAAL 349 Query: 358 SVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLA 413 L + G+ GR AVLG M E+G+ S + H + + N+S + G Sbjct: 350 RALVAMGEAGKADGGRTWAVLGPMAELGDDSLAEHDAVGRLAVRLNVSRLVAVGGREASW 409 Query: 414 L----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L + ++S L GDVV+VK+S S G R+ LL+ Sbjct: 410 LQLGAYNEGSWGEESVLVSDAQAAVDLLRSELRPGDVVLVKASRSVGLERVALALLD 466 >gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] Length = 472 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 166/475 (34%), Positives = 234/475 (49%), Gaps = 22/475 (4%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PLWT D+ A+ G G +G++ DSR + P + F A+KG DGH F+ Sbjct: 1 MTAPLWTAFDIAAAVDGEVYG---DFRTDGVTFDSREVGPGDLFIALKGETTDGHRFLDK 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A GA +V+ P V D + AL+ L AAR R +I +TGSVGK Sbjct: 58 AFAAGAAGAIVSDAC-------DGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGK 110 Query: 120 TTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T TKE L L + + + SYNNH GVPL+LARMP D G+FE+GM+H GE+ Sbjct: 111 TGTKEALYACLDRALPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELAA 170 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT LVRPH+A++T IAPAH + F+ +IA AK EIF+GL+ G + YD + L A Sbjct: 171 LTRLVRPHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIA 230 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I +FG + AD + + + + L + G H N + Sbjct: 231 AA-KPHAARILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAM 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-----FFTLIDESYNANPAS 352 + V + D+ A A + GRG+R A+ G LIDESYNANPAS Sbjct: 290 AVIAAVWAVGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPAS 349 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M + + + RR+AVLG+M E+G S +H DLA L + L G + Sbjct: 350 M---AATIKMLGRERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMA 406 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 AL +AL I + D I++ + GD +++K SN+ G RL+ L + Sbjct: 407 ALANALEGRIEFEHVPDADAAIESIEAKIAPGDAILIKGSNAIGLSRLVAHLRTK 461 >gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 456 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 116/467 (24%), Positives = 191/467 (40%), Gaps = 22/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + + +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + S+P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI F Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D F + + ++ Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + N+L Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA----------RGCPGFTINSPLGVAQVQLNLLGA 284 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNANPASMKAAI 357 L + + L A +++ G + + + A+I Sbjct: 285 LNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVIDDTYNANPASI 344 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + I GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 345 NAAVDILTGFTGRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSA 403 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] Length = 455 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 114/451 (25%), Positives = 192/451 (42%), Gaps = 25/451 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLS 82 + +S D+R+I F +KG ++GHD++ A++ GA + V + Sbjct: 20 EQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEGQPVPAALPDD 79 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 ++ V D L AL ++A A R++ +I ITGS GKTTTK++L LS +TY G+ Sbjct: 80 FQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDILASLLSLEGETYKTQGN 139 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNHIG+PLT+ MP + I E+GMS GEI L+ + +P +A++T I +H+ Sbjct: 140 YNNHIGLPLTILAMPSTCKYLILEMGMSGYGEIERLSEIAKPDLAIVTNIGESHMEQLGS 199 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 IA AK EI EGL G +F++ D+ + K + Sbjct: 200 RAGIAKAKMEIKEGLSPAGFLFIDSDEPLLDGWKQ------------SSIMRVGFNHADI 247 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + Q + +G H +N + + L Sbjct: 248 LVENVAATVDGYQFDIEGHHFELSLLGKHNVKNAAYCIAVARKFGLVTSKIQTGLRQ--- 304 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R +++++YNA+P SM AAI L I + + + VLGDM E+G Sbjct: 305 ISLTSMRLEKLTGNKGELIVNDAYNASPTSMIAAIDALKAIPSYEKR--VVVLGDMFELG 362 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLF 436 ++ H +A+V++ I+HV G + + + + T L Sbjct: 363 TEEEALHKSVAQVITP-PITHVLTLGDRAKWIYEEASHISSSSTFDEMAHFTTKQELADH 421 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + V++ K+S +I ++ Sbjct: 422 LSKLVDQKTVILFKASRGMKLEEVITAYQDK 452 >gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 453 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF+ A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VAGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae DSM 12333] gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae DSM 12333] Length = 474 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 200/477 (41%), Gaps = 18/477 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T ++ G + PQ V+ G+ IDSR F A+ G H DGH ++ Sbjct: 1 MIEM-TADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRV 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR------SKATIIAI 113 A + GA +V + + VDD AL LA R ++ I Sbjct: 60 AHENGATTSLVTRLVPDA---GDGAQVLVDDAQRALGDLARHVLARRREVADEPPVVVGI 116 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT+TK++L L+ + +A GS NN +G+PLT+ R P D + E+G G Sbjct: 117 TGSVGKTSTKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDARVVVAEMGADAPG 176 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + +LT + P +AV+ T+ AHL+ F ++ +A+ K+E+ GL G LN DD Sbjct: 177 NLTYLTSIAPPDVAVVLTVGRAHLAGFGSVDAVAATKSELVSGLAPGGFAVLNADDERVA 236 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + A + T S R + V EV Sbjct: 237 AMAR--LAPRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTPDGEEVPVTLALVGEH 294 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 L + A A ++ + R T++D++YNANP S+ Sbjct: 295 HVTNALAAAAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDGVTVVDDAYNANPESV 354 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +AA+ L I+ E R +AVLG+M E+G+ S+ H + V N+ + + G A Sbjct: 355 RAALKALVAIAG-RERRSVAVLGEMLELGDSSRDEHDAVGRVAVRLNVDKLVVVGEGARA 413 Query: 414 LKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ +D ++ + L GDVV+VKSS G L + L Sbjct: 414 MHTGASHEGSWGDEALFAPDLDAARAYLATELRPGDVVLVKSSKGAGLAALADELTA 470 >gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] Length = 1011 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 110/482 (22%), Positives = 178/482 (36%), Gaps = 22/482 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W LL A G G + + DSR + P + F A+KG +DGH +I A ++ Sbjct: 523 WNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQR 582 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 AG +V + + V D L AL LA R + AITGS GKTT Sbjct: 583 AGAIVAE--WMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITGSSGKTTV 640 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI--------GVPLTLARMPVDVDFGIFELGMSHLGE 174 KEM+ + + G+PL+L + + E+GM+ GE Sbjct: 641 KEMVASIFAEALQGSRTGMDAVLKTRGNFNNLVGLPLSLLPLEAGHRLAVVEMGMNVPGE 700 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + P I I + PAHL + +A+AK E+F G+ +N DD Sbjct: 701 IARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRPEAVRVVNLDDPHVRA 760 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 K I + K + M L + + Sbjct: 761 QAKKFAGEQIGFAVTPSGRKFGPQVRATRPDNLGEQGMRFTLHIEGWRARVTVPVFGAHN 820 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 A + + A + KR G +++++YNANPASM Sbjct: 821 VSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSVDKRLAVTELPGGLKVVNDAYNANPASMA 880 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A + ++ H R +A LGDM E+G S+ H + +++ + L+G + Sbjct: 881 AGLRTVAAF-GHRGCRHLAALGDMLELGAASEDLHAGIGALVASLGYDFLALTGMQATVM 939 Query: 415 KDALP----RSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A + ++ + +I + L GD +++K S +L++ L Sbjct: 940 ARAASAAGMKEENIRVFANPRAMADWIYPMLARGDLAAGDWLLIKGSRGMRMEQLLDELE 999 Query: 466 EE 467 + Sbjct: 1000 QR 1001 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 98/505 (19%), Positives = 165/505 (32%), Gaps = 66/505 (13%) Query: 4 LWTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + T L+QAI G V V I+ DSR + P F A++G DG +I Sbjct: 1 MITLAKLVQAIAPGANRRLSGTVLAQPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPE 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 A+ KG V D+ + ++PV VDD AL +LA A S+ ++AITG+ Sbjct: 61 AIGKGCLA--VVVDVDEGVDEWNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----------------MPVDV 160 GKTT ++ L + IG+ N L + Sbjct: 119 GKTTCSWLIEEMLVASGFRPGVIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMA 178 Query: 161 DFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D G+ + +S + R +A+ T ++ HL +E AK ++F Sbjct: 179 DNGVTHVIMEVSSHALQQQRLGSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHL 238 Query: 219 KTGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 K + + E + +L + + G + + + Q E + Sbjct: 239 KEQGVAVVVLGPQAEGCDWGGLLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLH 298 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 L+G + G + N+L G+ L D ++ L+ GR +R R Sbjct: 299 LRGAEVNFASPLTGEYNVLNVLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGE 358 Query: 336 QG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 Q + Y P ++ + L ++ GR + V G G L Sbjct: 359 QIGSGPAVFVDYAHTPDALDNVLRNLKKL---TTGRLLCVFG----CGGDRDRGKRPLMG 411 Query: 395 VLSLYNISHVWLSGFHVL--------------------------ALKDALPRSIHVHYSE 428 ++ V ++ + AL +A Sbjct: 412 RVAAQLADAVVVTSDNPRTEAPEAIIDEIVAGVEAGGKSRTDAWALLNAAQPVDGYTVIA 471 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 S GD V++ K Sbjct: 472 DRRCAITAACSLAAPGDSVLLAGKG 496 >gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 505 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 141/504 (27%), Positives = 213/504 (42%), Gaps = 41/504 (8%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T D+ + G G P+ V G + DSR I F A+ G + DGHDF Sbjct: 1 MIEI-TLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQ 59 Query: 59 HAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGA--------------LNKLAVAAR 103 A+ +GA +V D+ V ++ + D+ A + KLA Sbjct: 60 SAIDRGAVGALVARDVGVPAVILPPVEQIEGDNSDLAANDPDGSARAVVAGMAKLAAHVA 119 Query: 104 ----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 + + I ITGS GKT+TK+++ L+ +T A GS+NN IG+P T+ R D Sbjct: 120 TTLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTED 179 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 DF + E+ +G I LTH+ P I V+ + AHL F E IA AK E+ E L Sbjct: 180 TDFLVAEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEALPA 239 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G LN DD + +++ A + + + + S+ + Sbjct: 240 DGIAILNADDELVAGMASRTKARVVCFSTDPRSNAEYVAEGITLDDVARASFTMHSPNSE 299 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +V G H N L T + D T +ALS H + Sbjct: 300 PQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVNRMDVNTRADGV-- 357 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+I+++YNANP SM+A I+ L + G R IAVLG+M E+GE S H L L+ Sbjct: 358 TVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVEAHTALGNELAR 417 Query: 399 YNISHVWLSGFHVLALK---DALPRSIHVHYSETMDGLFLFIQSSL------------VD 443 Y ++H+ + G A R I + ++ + L Sbjct: 418 YRVTHLVVVGESAETAALLSRAAERGIESVSALDIEDATERVSEILRTVPLGEENWRDRP 477 Query: 444 G-DVVVVKSSNSCGFYRLINLLLE 466 DVV+VK+SN+ G +R+ LL+ Sbjct: 478 DRDVVLVKASNAAGLWRVAERLLD 501 >gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] Length = 468 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 200/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ S G ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGVRARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDA 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + S + + ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356 + L F P +GR + + T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G L + Sbjct: 353 IDVLAACSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACE 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A S H+ + + + ++VK S R+++ L E Sbjct: 409 AYGASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] Length = 452 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 117/468 (25%), Positives = 200/468 (42%), Gaps = 20/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T H++ + G + ++G+ IDSR + + I G DGH F Sbjct: 1 MI-VKTIHEITNMMHATLHGDIDDTKKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 ++ GA + + D V PV VDD L A+ L+ A +I +TGS GK Sbjct: 60 TIEDGALISLWQKDHVPYP---DFPVILVDDTLRAMQDLSKAYLDELHPLVIGVTGSNGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T+ K+ML S KKT G+ N+ IG+PLT+ D++ I E+GM + GEI LT Sbjct: 117 TSCKDMLYSIFSQEKKTQKTQGNRNSEIGLPLTIFDFDEDIEVAILEMGMENKGEITQLT 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P I+VIT+I AH+ N G +IA AK EI EG ++ G NY+ + + Sbjct: 177 SIAQPDISVITSIGSAHMENLGGKLQIAQAKCEILEGTKENGLFLYNYESKEIQEVLCTL 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + SFG+ + ++ + + V G A N L Sbjct: 237 DTENK-NVVSFGQGGDVSIT---SDIEYDKEGIVFKCNILDAPVHLRAFGDFQAMNALPC 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I ++ + L K ++ ++D++Y +NP S KAAI Sbjct: 293 IYIAKACHLKEESILNGLKNLE----MTKMRTQLISVKNAYILDDTYKSNPESAKAAIDT 348 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L ++ + IA++ DM ++G + H D+ + ++ +G D Sbjct: 349 LMELPANK---HIAIISDMLDLGSEEKQLHYDVGVYAKEKGVDELYCTGPLSKETADGF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ET D ++ + L ++++K S + L++ + Sbjct: 405 ---NGKWYETKDEIYEACKPLLDKDCIIMIKGSRAMKMDTLVDAFRGK 449 >gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] Length = 470 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 117/468 (25%), Positives = 192/468 (41%), Gaps = 19/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ +++ + I G ++ IS DSRS P + F AIKG +D HDF+ Sbjct: 1 MS-MFSLREAAALIPGSTVLGDDSVAFERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + + + ++P V D L LA R + ++A+TGS GKT Sbjct: 60 AARNVTAALASR----TPQDWNVPTLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSD 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +AV+ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGIAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + K + + + +EV +G H A N L Sbjct: 235 --VAATGNRIMDFALNSAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAA 356 +D + L F +GR + + T+ID++YNANP SM+AA Sbjct: 293 AATSAALAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAPRPA----PRVLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMGDASRDACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 A + H+ + L +Q + ++VK S R+++ Sbjct: 409 AY--GANAHHVADVGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 454 >gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] Length = 468 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 121/476 (25%), Positives = 198/476 (41%), Gaps = 20/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T I G + + +S DSRS+ + F A+KG +D HDF+ Sbjct: 1 MT-MLTLQQAAALIPGAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ + S+P V D L LA R R ++A+TGS GKT Sbjct: 60 AARGANAALVSREGA----PASLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE + Sbjct: 116 TVKEMIASIFAAAVGIDARLSTAGNFNNDIGLPLTLLRLSAAHRLAVIELGMNHPGETQT 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD + + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHASVIHALAPDGVAVFPADDKYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + ++ EV +G H A+N L Sbjct: 235 --VAATGNAILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 ++ L F P +GR + R + LID++YNANP SM+AA Sbjct: 293 AAAAAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+Q + R+ V+G+M E+G+ +FH ++ I ++ +G Sbjct: 353 IDVLAQQAS----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATGDATRDACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 A + + + + L + ++ V+VK S R+++ L + PA Sbjct: 409 AYGDTAR--HFDDVGALLAALDAAGFGAAATVLVKGSRYTRMERVVDALTNQ-PAT 461 >gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] Length = 455 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + Q + V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQTLG--LPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL KLA A R + ITGS GKT Sbjct: 58 LAAGATAVVVSREDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLACVLRHRFGNEAVLATAGNFNNHIGLPLTLLKLNEKHRYSVIEMGMNHFGELSL 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + P++A++ AH+ F G+ +IA AK+EI+EGL G + +D+ + Sbjct: 174 LTQIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLSDGIALIPCEDANIATFE 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + L +T D + ++ + + VV G H N Sbjct: 234 AATAQLNAQTFGVAS----GDVHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + + L F +GR + TLID++YNANP SMKAA Sbjct: 290 VAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+ + RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLAAMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 ETF--GAEGLWFADKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452 >gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] Length = 457 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 194/466 (41%), Gaps = 29/466 (6%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL +L A H GI D+R + P E F A++G ++DGH F+ A+ Sbjct: 18 IPLLQLPQILAATAVHLDAGQG-LTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAM 76 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++GA + + + P V D L A L R + +IA+TGSVGKTT Sbjct: 77 EQGAIAAITDQ-----VLPGDFPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTT 131 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE++ L +YNN IGVP TL ++ D + + E+GM LGEI LT + Sbjct: 132 TKELIAAVLGLQGSVLKTEANYNNEIGVPKTLLQLTTDHAYAVIEMGMRGLGEIASLTRI 191 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP IAVIT + AH+ E IA AK E+ + T LN D+ LL + Sbjct: 192 ARPDIAVITNVGTAHIGRLGSREAIAQAKCELLAEMPTTSVAVLNADNP---LLIETATE 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + S+G D + E L + + +L Sbjct: 249 VWSGKTLSYGL-TAGDLRGHLQGDMLEVEGQCFPLPLPGQHNALNYLAALAVAKLLGLDW 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + R + L+DE+YNA P SM+AA+ +L+ Sbjct: 308 KPLLQG-------------LQVNLPEGRAKSHRLGEDVVLLDETYNAGPESMEAALRLLA 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419 Q R+AVLG M E+G+ + H + + + N+ + + G AL Sbjct: 355 QTPGKR---RLAVLGPMRELGDYALELHYQIGQKVRELNLDGLLVLDMGEEGTALVKGAA 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + T L ++Q S+ GD ++ K+S+S G R++N L Sbjct: 412 P-LPSQQFATHTELVNYLQDSIQPGDRLLFKASHSVGLDRVVNSLK 456 >gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 528 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 118/498 (23%), Positives = 190/498 (38%), Gaps = 43/498 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T +++ + G G P V G + DSR + F A+ G DGH++ Sbjct: 25 MIEL-TLGQIVEIVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 83 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD---------------------VLGALNK 97 A+ +GA V+ + +P V V+ AL+K Sbjct: 84 TAIGQGAVAVLAARP-------VDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSK 136 Query: 98 LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 LA T++A+TGS GKT+TK+ + LS T A GS+NN +G+P T Sbjct: 137 LARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTA 196 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R + + E+ +G I L + P I + + AHL F IA AK E+ Sbjct: 197 LRCTTHTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGEL 256 Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 G LN DD F + ++ A + T + + + + Sbjct: 257 VEALPAAADGGVAVLNADDPFVAAMAPRTTAR-VVTFSTANPPAPGAQYWAGDLELDDVA 315 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 L + Q + A VD + R Sbjct: 316 RASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASAHRM 375 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFH 389 T+I++SYNANP SM+A ++ L+ + + AVLG M E+G+ + H Sbjct: 376 DVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEH 435 Query: 390 IDLAEVLSLYNISHVWLSGFHV--LALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 L L+ Y++ + G + AL++ A + ++ + DGDV Sbjct: 436 RALGAELAKYHVERLIAVGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDV 495 Query: 447 VVVKSSNSCGFYRLINLL 464 V+VK+SN+ +R+ L Sbjct: 496 VLVKASNADQLWRVAEEL 513 >gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 514 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 125/495 (25%), Positives = 198/495 (40%), Gaps = 30/495 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL D+ G + G P V G + DSR+++ F + G DGHDF Sbjct: 1 MIPL-RLGDIAAITGGELVDGAEPDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFAG 59 Query: 59 HAVQKGAGL-----------VVVNTDMVASIGSLSIPVFGVDD-------VLGALNKLAV 100 AV +GA ++V+ + + D V+ AL+KLA Sbjct: 60 IAVDQGAVACLEGHRTGQPGILVDNSDADELSDSATSYVLEADNTGEGQAVITALSKLAR 119 Query: 101 AARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 A + + T+I +TGS GKT+TK+++ L +T A GS+NN +G P T ++ Sbjct: 120 AHTKKAVEENGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGSFNNELGHPYTALKV 179 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + EL +G I L + P I + + AH+ F E IA AK E+ E Sbjct: 180 GEHTTYLVSELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGEFGSKENIAQAKGELVEA 239 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L + + L I +FG A + + + Sbjct: 240 LPPAADG-GVAVLNADDPLVIGMRNRTSARIVTFGMDNPATVRAEDVELDAVARAAFTLC 298 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + Q A +D A ++ R Sbjct: 299 IEGEKARRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALSEHVSSSEYRMDVRTRA 358 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEV 395 T+I++SYNANP SM+A I L+ + E AVLG M E+G+ S + H LAEV Sbjct: 359 DGVTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMGELGDDSLTEHAALAEV 418 Query: 396 LSLYNISHVWLSGFH--VLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 L ++ ++ G + + AL +A ++ T + L GDVV+VK+S Sbjct: 419 LYNRHVDNLVAVGDNTAMGALALEARRYGVNTEVVSTTQEAADIVLRHLKPGDVVLVKAS 478 Query: 453 NSCGFYRLINLLLEE 467 N+CG + + + +L + Sbjct: 479 NACGLWAVAHTILAD 493 >gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 442 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 197/457 (43%), Gaps = 27/457 (5%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V +S DSR + FFA+KG ++D H ++ A ++G VV Sbjct: 2 GDGTVTVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEG---- 57 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKT 136 +I V D AL +LA R + ++A+TGS GKTT KEM+ + Sbjct: 58 -NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDV 116 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 G++NN IGVPLTL R+ F + ELG +H+GEI + T L +P +A++ + AH Sbjct: 117 LFTQGNFNNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAH 176 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 L F I+ +A+AK EIF GL K G +N ++ + +A Y + A Sbjct: 177 LEGFGSIDGVATAKGEIFRGLTKNGVAIINLAHNYQQKWQA--DIGRHAVQYFAYDNPRA 234 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 DF + + + + +++ +G H N L + + A K Sbjct: 235 DFYAEQIHFSEQGASFLLHTPQGRVQINSPYLGEHNISNALAATALSMNVGATTAQVKKG 294 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L +GR + N L+D++YNAN SMK+AISVL + R+ V+G Sbjct: 295 LETPSLVKGRLFPIQPCEN---LLLLDDTYNANVGSMKSAISVLQKYPA----FRVFVVG 347 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 DM E+G+ +Q H ++ E + V G + + L + Sbjct: 348 DMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAV----NSGRHFTDKTELVTY 403 Query: 437 I-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + Q VV+VK S S +I+LL F Sbjct: 404 LTPIIQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 440 >gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis TXDOH] Length = 468 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 121/471 (25%), Positives = 200/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ S G ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGERARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDA 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A + F + S + + ++V + +G H A+N L Sbjct: 235 --VAATGNRLVDFALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356 + L F P +GR + + T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G L + Sbjct: 353 IDVLAACSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACE 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A S H+ + + + ++VK S R+++ L E Sbjct: 409 AYGASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] Length = 470 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 208/479 (43%), Gaps = 26/479 (5%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P + L + + + + ++IDSR F ++G DGH ++ A Sbjct: 7 PALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAF 66 Query: 62 QKGAGLVVVNTDMVASIGSLSIPV--------FGVDDVLGALNKLAVAARLRSKATI-IA 112 Q+GA +V + + GS + V D L AL L + I I Sbjct: 67 QRGASAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIG 126 Query: 113 ITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 +TGS GKT+TKEML LS + +A G+ N+ IGVPL++ + + + I E+G+ H Sbjct: 127 VTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDH 186 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GE+ L +V+P++AV+T I AHL F E IA KA+IF + F+ D+ F Sbjct: 187 VGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEF 246 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 F +L + + ++ + V L K + + G G H Sbjct: 247 FHVLVE---------GWRGTFLPYGPATVEGFEGWESRGLEGVILSWKGLRIPLQGYGEH 297 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 M +N L + + L + L + P GRG+ + + YNANP Sbjct: 298 MVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELKEIGGVW----FLVDCYNANPE 353 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+A++ + + I VLG M E+G+ + S H L + L+ Y V L G + Sbjct: 354 SMRASLEGVRGLKGIRRR--IVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEM 411 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 A L V + T++ + S + +GD+V++K S + G R+I + A Sbjct: 412 EAAFAVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQDFEGRYHA 470 >gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 452 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 134/466 (28%), Positives = 197/466 (42%), Gaps = 21/466 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + V G++ D+R ++P + F A+ G +DGH+F+ A GA Sbjct: 5 NVQTIATWLGAPP--PDVDAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV+ + + + V D AL LA AAR ++A+TG+ GKTT KEM Sbjct: 63 VAAVVSRRVASP-----LAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS + T A G+ NN IG P TL + + ELG +HLGEI + T L P Sbjct: 118 LAAILSRVHPTLATRGNLNNDIGAPQTLLALSSAHRRAVIELGANHLGEIAWTTSLAIPD 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT + AH+ F GI IA AKAEI GL +GT LN DD F+ + + G Sbjct: 178 VAVITNVTGAHVGEFGGIGRIAQAKAEILLGLSASGTAVLNRDDRFYPMWRE---LAGDA 234 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + FG A + + + V +G + +N L + Sbjct: 235 EVLDFGLDPAARVRAEALACDDDGRYAFTLFVDGVSLGRVRLALLGRYNVRNALASAAAA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + L R L+D++YNANP +++AA++VL+++ Sbjct: 295 WALRVPAEDIVAGLEACR---TMPGRMMNVPGIRGTRLLDDTYNANPGAVRAALAVLAEM 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 R LG + E+G S+ H DL V I + G A Sbjct: 352 PA----PRWCFLGALGELGAESERLHADLGRVARELKIDFLGTFGADARPAVAAF--GDR 405 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + L + L G V+VK S S G RLI L + P Sbjct: 406 GCHFDDWAALVRYAHDHLPPGASVLVKGSRSAGMERLIADLRTDAP 451 >gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis Bt4] Length = 468 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 200/471 (42%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ S G ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGVRARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDA 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + S + + ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356 + L F P +GR + + T+ID++YNANP SM+AA Sbjct: 293 AATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G L + Sbjct: 353 IDVLAACSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACE 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A S H+ + + + ++VK S R+++ L E Sbjct: 409 AYGASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458 >gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] Length = 459 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 115/469 (24%), Positives = 205/469 (43%), Gaps = 21/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++++A+ G + + IS D+R I + F A+KG ++G+++ A QKG Sbjct: 4 LSLEEIVKAVSGEILIKGNELGWEYISTDTRKIEEKAIFIALKGERFNGNEYTASASQKG 63 Query: 65 AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A + +V+ V V D AL LA + + + ++AITGS GKT+TK Sbjct: 64 AFICIVDEVHFKKEEIKDYTTVIKVKDTSEALLDLAKYYKSKLEVKVVAITGSTGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L + K + G++NN IG+PL + ++ D + E+GMS+ GEI + Sbjct: 124 DLTASVLGAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEIHKMAKTAL 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA+IT I +H+ N + I AK EI + + + +N +D LK + + L Sbjct: 184 PDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNLKEEKYKLI 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 G KN + + ++ G +++ G H N L+ + Sbjct: 244 KT-----GLGKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLLAIACG 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 I + + R F ++D+SYNA+P SMKAAI VL I Sbjct: 299 RIFKMSFEEIKNGILDLQTTSMRLDMVEGKK----FNIVDDSYNASPDSMKAAIEVLCNI 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + AVLG M E+GE + H ++ + +++ + + G A + Sbjct: 355 KSKRK---FAVLGTMKELGEEAYRAHREIGKYAGEKSVN-LIVLGSFSKAYIEGYLEGSE 410 Query: 422 -----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ ++ + + ++ +L DVV+ K+S S F ++ Sbjct: 411 NKNNRGNILEAKDKEEVINYLDINLNSEDVVLFKASRSEHFEEMVESFK 459 >gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] Length = 457 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q ++ + + P + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAVVTLSEKKVA------NQPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMRPGSLLLAPADSIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQTLDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A + R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIRQAFQN---LDLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 HV+Y + +GL +++SL D +++K SNS +L+ L E Sbjct: 403 IGHVYYFKKTADEDQFEGLVKQVKASLGTNDQILLKGSNSMNLAKLVESLENE 455 >gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Herminiimonas arsenicoxydans] Length = 455 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 124/469 (26%), Positives = 198/469 (42%), Gaps = 26/469 (5%) Query: 1 MNPLWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M T + L AI + G +G+S DSR +A F A++G +D H F+ Sbjct: 1 MKA--TLNLLQTAIKNATATG---DAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQ 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 ++ VV L++P V D AL ++A R + +I +TGS GK Sbjct: 56 VAERKVAAVVAEKIPAG----LNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGK 111 Query: 120 TTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 TT KEM+ L + G++NN IGVPLTL R+ + ELGM+H GEI Sbjct: 112 TTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIA 171 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ + +P + ++ H +E +A + L G DD+F L + Sbjct: 172 VLSAIAQPTVGLVNNAQREHQEFMESVEAVAQENGAVLASLPADGVAVFPADDAFTPLWR 231 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + +FG S +AD + + M V + + G H +N Sbjct: 232 SYAAQRKT---LTFGFSADADVRCTYAANVF-GNDMSVTAGNQKFTIALSAAGVHNVRNA 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + + ++ L F P GR + L +ID++YNANP S++AA Sbjct: 288 LAAIACTLAIGIAPEAIVRGLQAFAPVSGR---LQRKLAASGALVIDDTYNANPDSVRAA 344 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+Q++ RI VLGDM E+G + +H ++ I HV G Sbjct: 345 IDVLAQMAS----PRILVLGDMGEVGNDGRQYHEEIGAYARANGIEHVLALGELARHTVS 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A + ++++ L + + V+VK S R++ LL Sbjct: 401 AFGAG--AQHYDSVEALNDALAAIFAADATVLVKGSRFMKMERVVQHLL 447 >gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechocystis sp.] Length = 454 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 120/475 (25%), Positives = 200/475 (42%), Gaps = 28/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 MN + D+ ++ + + +N I D+RS+ + F A++G +DGH FI Sbjct: 1 MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ GA VV + + + + F V+D L A +A R R II +TGSV Sbjct: 61 PQALTAGAIAVVTDRPVEGLGET--VAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ LS + +YNN IGVP TL + D DF I E+ M G+I Sbjct: 119 GKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIAL 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P I +IT + AH+ IA AK E+ + Sbjct: 179 LADIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQP-----------PESTAILN 227 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +AL ++T F + K + L + L G S+ + G+ Sbjct: 228 RDNALLMETAQRFWQGKTITYGLEGGDVHGTVDGENLILDGVSLPLPLAGVHNASNYLAA 287 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L L + + + + R + + L+DE+YN SM A++ Sbjct: 288 IALAQCLGLDWQQLQSGLTVELPKGRARRYQWGQDV------VLLDETYNDGLESMLASL 341 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415 +L+ R+AVLG M E+G+ +FH + + + ++L + A+ Sbjct: 342 DLLANTPGKR---RLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNTDAIA 398 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + L ++++L GD ++ K+SNS G +++ LL E P Sbjct: 399 AGA-NGVETQSFSDGPSLVAALKTTLQPGDRLLFKASNSVGLGAVVSQLLAENPT 452 >gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] Length = 470 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 195/468 (41%), Gaps = 19/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ +++ + I G ++ + IS DSRS P + F AIKG +D HDF+ Sbjct: 1 MS-MFSLREAAALIPGATVLGDDSVTIERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + V+V + ++P V D L LA R R ++A+TGS GKT Sbjct: 60 AVRNVSAVLVTR----TPQDWNVPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSE 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +AV+ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPEGVAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + K + + + +EV +G H A N L Sbjct: 235 --VAATGNRIMDFALNSAERTTEAAVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 +D + L F +GR + + L T+ID++YNANP SM+AA Sbjct: 293 AATSAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLASRPA----PRVLVMGDMGEVGDNGPAFHREIGAYARDRGIDALYAMGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 A + H+ + L +Q + ++VK S R+++ Sbjct: 409 AY--GANAHHVADIGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 454 >gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus clausii KSM-K16] gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus clausii KSM-K16] Length = 453 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 112/444 (25%), Positives = 194/444 (43%), Gaps = 22/444 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85 +G+S D+R F +KG +DGH FI A++ GA + + V + + Sbjct: 24 FSGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGALWKEQEPVPEQLPETFQL 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + V+D L AL LA A R + +I ITGS GKTTTK+++ L+ + G+ NN Sbjct: 84 YYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVASVLAGTAAVHKTKGNLNN 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIGVPLTL MP D + + E+GM+H GEI LT + +P+ A+IT+I AH+ + E Sbjct: 144 HIGVPLTLLAMPEDCTYAVVEMGMNHAGEISTLTQIAKPNAAIITSIGDAHIEHLGSREG 203 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 IA+AK EI +GL K + + D+ ++ + + K + + Sbjct: 204 IAAAKMEIADGLIKESWLLFDGDEPLLSPYNEQAETTVGFSDQAATKISDVKTLENGYVF 263 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + ++ + N+ + + + Sbjct: 264 YLNGARWQLTM--------------LGKHNVKNAAYAILLAQKLGFSNAMIQKQLSSLAI 309 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 G R T+I+++YNANP SMKAAI + ++ + + VLGD+ E+G+ Sbjct: 310 TGMRLEKLKGPNGSTIINDAYNANPTSMKAAIETVKELPHYKRR--VLVLGDIYELGQDE 367 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH----YSETMDGLFLFIQSSL 441 ++ H +A + I+ V G + +A +++T+ ++ Sbjct: 368 EALHKSVATAI-EPPITDVVTVGKKGRWIYEAQLDKKDSRISLVHADTVVEAAEILKPYY 426 Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465 VV++K+S ++ + Sbjct: 427 TKDTVVLIKASRGLALEEVLPAVK 450 >gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 456 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MLKPMTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G + I AK EI EGL+ GT LN +D F + + ++ Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + T + + + + + V + +G H N L Sbjct: 235 GNRNVLTFALTDSAADVYASELS-RDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAV 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAASCAMGVPLEGIVTGLNNVQPVKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+G+ ++ H ++ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448 >gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia graminis C4D1M] gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia graminis C4D1M] Length = 475 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 188/467 (40%), Gaps = 18/467 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 N ++T + I G ++ +S DSRS P + F AIKG +D HDF+ Sbjct: 6 NAMFTLREAAALIPGATVIGDDSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLADVA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + +V G S+P V D L LA R + ++A+TGS GKTT Sbjct: 66 ARNVSAALVAR----VPGGWSVPALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTT 121 Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 122 VKEMIASIFAAAVGVDARLATAGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 181 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +AV+ H + +E +A A + L G DD++ + + Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTPDGIAVFPADDAYASIWR-- 239 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I F + + + +Q + +G H A N L Sbjct: 240 -VAATGNRIVDFALNTAERTTEAAVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALA 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +D + L F +GR ++ T+ID++YNANP SM+AAI Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAI 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + R+ V+GDM E+G+ FH ++ I ++ G A Sbjct: 359 DVLASHAS----PRVLVMGDMGEVGDNGPEFHREIGAYAKERGIDALYAMGDASRDACTA 414 Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 H+ + L +Q + ++VK S R+++ Sbjct: 415 Y--GASAHHVADVGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 459 >gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 450 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 199/467 (42%), Gaps = 34/467 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T LL + G +P V G+ D+R++AP F A++G +DGHD+ AV GA Sbjct: 8 TLQTLL---GAEAEGTLP-MSVRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 LV+ + +P V D L A LA R R ++A+TGS GKTTT+E+ Sbjct: 64 ALVIAERPVA-------VPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTREL 116 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ A G+ NN +GVP L ++ + + E+GM GEI L P+ Sbjct: 117 IRAVLATAGPVLAPPGNENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPN 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + VIT + AH+ IA AK E+ L +G LN +D + A + Sbjct: 177 VGVITNVGSAHIGRLGSHAAIADAKCELLAELPCSGIAVLNGEDERLLSTARRHWAGPVL 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T S+ V L + + G H N L L + Sbjct: 237 TYGLDAGDVM-------------GSFDGVHLHVDGIAFIPPLPGRHNHLNFLAALAVARH 283 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++ + L GR R +G LIDE+YN+ P S +AA++ L+ + Sbjct: 284 LGLELLQVRERLKDLQLPTGR---SRVIALEGDVQLIDETYNSAPESARAALAWLAGLP- 339 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIH 423 GRRIAVLG M E+GE S+ H L E + V + +G AL + Sbjct: 340 ---GRRIAVLGQMRELGEFSRELHRVLGEHCRRLALDEVVVLEAGEDTEALLAGAGD-LP 395 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + ++ + GD ++ K+S + G R++ + F A Sbjct: 396 AVQLADHRAVAAYLADRVRPGDRLLFKASRAVGLERVLAEFQDLFRA 442 >gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 504 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 120/498 (24%), Positives = 192/498 (38%), Gaps = 43/498 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T +++ + G G P V G + DSR + F A+ G DGH++ Sbjct: 1 MIEL-TLGQIVEIVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD---------------------VLGALNK 97 A+ +GA V+ + +P V V+ AL+K Sbjct: 60 TAIGQGAVAVLAARP-------VDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSK 112 Query: 98 LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 LA T++A+TGS GKT+TK+ + LS T A GS+NN +G+P T Sbjct: 113 LARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTA 172 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R + + E+ +G I L + P I + + AHL F IA AK E+ Sbjct: 173 LRCTTHTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGEL 232 Query: 214 FEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E L G LN DD F + ++ A + T + + + + Sbjct: 233 VEALPAAADGGVAVLNADDPFVAAMAPRTTAR-VVTFSTANPPAPGAQYWAGDLELDDVA 291 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 L + Q + A VD + R Sbjct: 292 RASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASAHRM 351 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFH 389 T+I++SYNANP SM+A ++ L+ + + AVLG M E+G+ + H Sbjct: 352 DVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEH 411 Query: 390 IDLAEVLSLYNISHVWLSGFHV--LALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 L L+ Y++ + G + AL++ A + ++ + DGDV Sbjct: 412 RALGAELAKYHVERLIAVGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDV 471 Query: 447 VVVKSSNSCGFYRLINLL 464 V+VK+SN+ +R+ L Sbjct: 472 VLVKASNADQLWRVAEEL 489 >gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] Length = 449 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 192/470 (40%), Gaps = 28/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +T + P + + DSR I F + G DGH+F A Sbjct: 1 MN--FTVKEAAAVFGQQIENETP---LASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + + + I V V D + A +LA A + + II ITGS GKT Sbjct: 55 KDNGAIATLWSHPTIE--PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ ++ +TY G++NN +GVPLT+ P D I E+GM H GEI L+ Sbjct: 113 TTKDMVEAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L P A IT I AH+ N E IA AK EI GL+K G + D+ E Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G + E+S + +G + +N L+ + Sbjct: 233 QTIETFGLTEGDLQGD---------IVEESQDQTIFTVAGTTFTLPVLGGYNVKNALIAI 283 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GI + + L+ F + R + ++ + YNANP +M + Sbjct: 284 GIGRHFGVADEAIKEGLAHFQLTKNR---TQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416 ++ GRRIAVL DM E+G S H +A L V+L G + AL+ Sbjct: 341 RKLPL--AGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAN 397 Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 AL + + L + +L D +V+K SN G +++ L Sbjct: 398 TALADKVRYFAIDEKPQLIASLIETLEPSDSLVIKGSNGMGLSEVVDALK 447 >gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] Length = 458 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L A+ IG + +S DSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEML L + A G+ NN +GVPLTL ++ + ELG S +GEI Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L RPH+A+IT AH+ F G E+I AK EI EGL GT LN DD F+ K Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ A G + ADF+ ++ + V + Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I A + L +ID+SYNANPASM AA Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +LS S GR + VLGDM E+G ++ H ++ + +S ++ G + Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + L + + +++K S S +++ L Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450 >gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. syringae B728a] gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. syringae B728a] Length = 456 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 125/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MLKPMTFRELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G + I AK EI EGL+ GT LN +D F + + ++ Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + + V + +G H N L Sbjct: 235 GNRNILTFALTDSAADVYASELS-RDARGCPAFNLNSPLGTARVQLNLLGTHNVSNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+G+ ++ H ++ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448 >gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 456 Score = 233 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MLKPMTFSELVVPLDARLVGG--DCSFVGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ ++ +P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGAV----LPQLVVLDTRKALAQLGAMNRNAFLDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G + I AK EI EGL+ GT LN +D F + + ++ Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + T + + + + + V + +G H N L Sbjct: 235 GNRNVLTFALSDSAADVYASELS-RDARGCPGFIINSPLGTARVQLNLLGTHNVSNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIVSNG---TRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+G+ ++ H ++ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448 >gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] Length = 467 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 116/476 (24%), Positives = 191/476 (40%), Gaps = 24/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M T L Q + V I+ D+R++ P EAF A++G +DGH F+ Sbjct: 1 MFSPITLTQLSQILAVSLPPQCDTPQDTPVIAITTDTRTLQPGEAFLALRGERFDGHHFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ +GA +V+ D A + ++P+ V D L A +A R + II +TGSV Sbjct: 61 EQAIAQGAVCAIVDADFTAD--NPNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L + + +YNN IGVP TL ++ ++ + E+ M GEI Sbjct: 119 GKTTTKELIAAVLGTQGNVHKTQANYNNEIGVPKTLLQLNSHHNYAVIEMAMRARGEIAL 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP I +IT + AH+ + IA AK E+ + + LN D A Sbjct: 179 LTQIARPTIGLITNVGTAHIGRLGSEQAIAEAKCELLAEMPQNSVAVLNCDHHRLMDTAA 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T G + + + L Sbjct: 239 TVWSGETLTYGLEGGDLQGELIDAHTLRVEGLDLPLPLPGYHNASNFL---------AAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 I+ L + R + ++DE+YNA SM AA+ Sbjct: 290 AVFKIIQGQGLSPTELYTPLQTGLSVQLPEGRAKRYELSNDIVILDETYNAGLESMIAAL 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415 +L + IAVLG M E+GE S FH + ++ N+ +++ +A+ Sbjct: 350 KLLMETPGQR---FIAVLGTMKELGERSLEFHQKVGKMAQELNLDALFILADAEEAIAMA 406 Query: 416 DALPRSIHVHY----SETM-DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V E + + + + + GD ++ K+S+S YR++ + + Sbjct: 407 TGAKGLSVVEIGKMEVENIHNQIAEQLIEFIQPGDRILFKASHSVELYRVVEKVRK 462 >gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] Length = 454 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 125/475 (26%), Positives = 196/475 (41%), Gaps = 28/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 MN + D+ ++ + + +N I D+RS+ + F A++G +DGH FI Sbjct: 1 MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ GA VV + + + + F V+D L A +A R R II +TGSV Sbjct: 61 PQALTAGAIAVVTDRPVEGLGET--VAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSV 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ LS + +YNN IGVP TL + D DF I E+ M G+I Sbjct: 119 GKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIAL 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P I +IT + AH+ IA AK E+ T LN D++ Sbjct: 179 LADIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNALLMETAQ 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T G + + L + + G H A N L Sbjct: 239 RFWQGKTITYGLEGGDVH-------------GTVDGENLILDGVSLPLPLAGVHNASNYL 285 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L D E R R L+DE+YNA SM A++ Sbjct: 286 AAIAVAQCLGLDWQQLQSG----LTVELPKGRARRYQWGQDVVLLDETYNAGLESMLASL 341 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415 +L+ R+AVLG M E+G+ +FH + + + ++L + A+ Sbjct: 342 DLLANTPGKR---RLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNTDAIA 398 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + L ++++L GD ++ K+SNS G +++ LL E P Sbjct: 399 AGA-NGVETQSFSDGPSLVAALKTTLQPGDRLLFKASNSVGLGAVVSQLLAENPT 452 >gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii DSM 18315] gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii DSM 18315] Length = 428 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 202/443 (45%), Gaps = 24/443 (5%) Query: 24 QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + F++ ++ DSR+ FFA+KG +DG+ + A+ G V++ + Sbjct: 8 ELFIHNPKVTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF----I 63 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD+VL L +LA R II ITG+ GKTTTKE+L LS+ G Sbjct: 64 GERTILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEG 123 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NNHIGVPLTL R+ D + + E+G SH G+I+ L + +P+ +IT + AHL F Sbjct: 124 NLNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFG 183 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E + K E+++ + +T D+ + LK ++ + T S + Sbjct: 184 SFEGVIKTKGELYDYMRRTKGKIFINQDN--KYLKEIANGIEQVTYGSDETAFAWGCV-- 239 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 C+ E + QGK V H IG + N L+ + + + +A++ + Sbjct: 240 --VSCNPYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERISRAIAAYE 297 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + + N+ LI ++YNANP+SMK A+ + + + +LGDM E+ Sbjct: 298 PTNNRSQLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSPK---ALILGDMREL 350 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G S H ++ + N V+L G H T + L ++ + Sbjct: 351 GPTSDELHTEVVARIKEGNYDKVFLCGEHFQKAA-----GKDFTTYATTEELIEALRKNP 405 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 ++G V++K S+ R++ +L Sbjct: 406 LEGYHVLIKGSHGMALERVVEVL 428 >gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] Length = 470 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 193/468 (41%), Gaps = 19/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + I G S+ +S DSRS P + F AIKG +D HDF+ Sbjct: 1 MT-MLSLRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++ V+V + + ++P V D AL LA R + + ++A+TGS GKT Sbjct: 60 AERNVAAVLVAR----TPENWNVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHRLAVVELGMNHPGETEL 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +AV+ H + +E +A A + L GT DD++ + + Sbjct: 176 LAKLAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGTAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + K + + + ++V +G H A N L Sbjct: 235 --VAATGNRIIDFALNSAERTTEAAVKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 +D + L F +GR + + T+ID++YNANP SM+AA Sbjct: 293 AATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLA----SRASPRVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 A H+ + L +Q + +VK S R+++ Sbjct: 409 AYGAG--AHHVADVGALVAQLQQAGFGATATFLVKGSRFMQMERVVDA 454 >gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 463 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 122/466 (26%), Positives = 216/466 (46%), Gaps = 16/466 (3%) Query: 6 TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ +G +G P V+G+S D+R++ + +KG +DGH F + AV+ Sbjct: 4 TLREITHWTRGKLVGGVSDPHLLVDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + N ++ IP+ V+D L AL +LA R + ++ ITGS GKTTTK Sbjct: 64 GAAAALWNREVPLPKDPP-IPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ L++ + + G+ NNHIG+PLTL MP D + + E+GM+H GEI L+ + Sbjct: 123 DLTAAILATRYRVHRTQGNLNNHIGLPLTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAA 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++T I AHL IA AK EI EG+ TGT+ ++ D+ L + A Sbjct: 183 PDLALVTNIGEAHLEFLGSRGAIADAKLEIREGMPSTGTLIIDGDEP----LLRERLAGE 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G ++ D ++ + ++ + +G H A N L+ + Sbjct: 239 ERPVIRVGFGESNDDRILDLEL-KGRAGIAFTSSATDTRFETGLMGKHNALNALLGIQAA 297 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + L R + ++D+SYNA+P +++AAI L+ + Sbjct: 298 RLLGLTETGIREGLKGAEGSGRR---LETSTASNGMLVVDDSYNASPTAVRAAIDWLTSL 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420 + E +LGDM E+G ++ H ++ I V+ G + + A Sbjct: 355 EDYEEKW--VLLGDMLELGVQEEALHREVGSYAVQQGIPRVFTLGERARWISEGARAAAP 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + V + +++ ++ G ++VK+S R++ L + Sbjct: 413 DLPVTHFNSVEEAVNTLRRRGGPGVAMLVKASLMARLDRVVQQLTK 458 >gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 456 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 208/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + + +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + S+P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI F Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELTPEHSAAVIELGASRVGEIAFTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D F + + ++ Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + +V + +G H N L Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ S GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGVEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC 43184] gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC 43184] Length = 428 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 202/443 (45%), Gaps = 24/443 (5%) Query: 24 QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + F++ ++ DSR+ FFA+KG +DG+ + A+ G V++ + Sbjct: 8 ELFIHNPKVTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF----I 63 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD+VL L +LA R II ITG+ GKTTTKE+L LS+ G Sbjct: 64 GERTILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEG 123 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NNHIGVPLTL R+ D + + E+G SH G+I+ L + +P+ +IT + AHL F Sbjct: 124 NLNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFG 183 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E + K E+++ + +T D+ + LK ++ + T S + Sbjct: 184 SFEGVIKTKGELYDYMRRTKGKIFINQDN--KYLKEIANGIEQVTYGSDETAFAWGCV-- 239 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 C+ E + QGK V H IG + N L+ + + + +A++ + Sbjct: 240 --VSCNPYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERISRAITAYE 297 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + + N+ LI ++YNANP+SMK A+ + + + +LGDM E+ Sbjct: 298 PTNNRSQLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSPK---ALILGDMREL 350 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G S H ++ + N V+L G H T + L ++ + Sbjct: 351 GPTSDELHTEVVARIKEGNYDKVFLCGEHFQKAA-----GKDFTTYATTEELIEALRKNP 405 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 ++G V++K S+ R++ +L Sbjct: 406 LEGYHVLIKGSHGMALERVVEVL 428 >gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 456 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 211/465 (45%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L + +G +G+S DSR IAP + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +L +PH+ +IT AH+ F G E I AK EI EG+E +GT LN +D F + + ++ Sbjct: 175 NLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + S +V + +G H N L Sbjct: 235 GHRNILTFALADAAADFHAGELS-RDARGCPSFTMASPLGSAQVQLNLLGTHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANP S+ AA+ + Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] Length = 459 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 117/463 (25%), Positives = 190/463 (41%), Gaps = 17/463 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T L + + + D+RS+ + F A+KG +D HDF+ A + Sbjct: 1 MMTLQQALGWLPSARLVGDGSVKPLRVHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + A+ +P V D AL +LA R + +IA+TGS GKTT Sbjct: 61 GAVAAIAHHGLAAA----GLPGLEVADSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVT 116 Query: 124 EMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 +M+ + +A G+ NN IGVPLTL R+ G+ ELGM+H GEI +L L Sbjct: 117 QMIAAILRAWKSTQAFATEGNLNNDIGVPLTLLRLRASHAVGVVELGMNHPGEIAYLAAL 176 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P +A++ HL + +E +A + + L G DD + + + + A Sbjct: 177 AKPGVALVNNAQREHLEFMATVEAVARENGSVLQALGTDGIAVFPADDDYTAIWRGLAGA 236 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + T G + + + ++ H G H +N L Sbjct: 237 RRVLTFAQTGPADVTAQAQWSGDCWQ----VAARTPAGPLDFPLHIAGRHNVKNALAATA 292 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + LS F P +GR + L TLID++YNANP SM+AAI VL+ Sbjct: 293 CALAAGVPLPVIAAGLSEFAPVKGRSRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLA 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ R+ V+GDM E+G+ FH + I ++ G A Sbjct: 353 ELPA----PRLLVMGDMGEVGDQGPQFHEEAGRYAHARGIEQLFTLGAQSQRASTAFGAG 408 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H + + G V+VK S +++ ++ Sbjct: 409 RHFSQMADLAAAV--VAELPQAGS-VLVKGSRFMKMEQVVQVI 448 >gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum thermopropionicum SI] Length = 469 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 139/476 (29%), Positives = 216/476 (45%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ T +L + G I P ++ +S D+R + E FFA+ G +D H+F+ A Sbjct: 1 MKPV-TLKELERIACGRIIQGDPGTVLSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG +VV+ + +PV V++ L AL LA R A ++A+TGS GKT Sbjct: 60 AGAGAGCLVVSR---TADLPAGVPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M LS+ +T G++NN IG+PLTL R+ + + E+ M GEI L Sbjct: 117 TTKDMTASILSTRLRTLKSEGNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEIDALCR 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P AVIT I AHL + IA+AK E+ E + G LN + F + Sbjct: 177 IAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRREAGRCR 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I +G AD + + S EV L G+ E G H N L + Sbjct: 237 GKVIY----YGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMNALAAI 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ L + + L+ R + +I+++YNANPAS KAA+ VL Sbjct: 293 GVARELGLTWEEVARGLAAVTLTGMRLEIIEAK----NLRIINDAYNANPASAKAALQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R +AVLG+M E+G + H ++ E + +S + G + + Sbjct: 349 KEMA--GGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGDLAAGIAEGALD 406 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN-LLLEEFPAI 471 + + ++ + DGDVV+VK S ++ LL PA+ Sbjct: 407 AGLPAERIFRCADNMQAAGILEELIRDGDVVLVKGSRGMKMEEIVRCLLKSREPAL 462 >gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. 1501(2011)] Length = 507 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 127/497 (25%), Positives = 201/497 (40%), Gaps = 44/497 (8%) Query: 5 WTFHDLLQAI---QGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 WT L A IG+ Q I D+R I + F AI G ++DGH+F+ Sbjct: 17 WTPEHLQAATAQLDSRWIGLDAQNKTTLNATRIITDTRKIQAGDTFLAIVGENFDGHNFV 76 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGS 116 A++KGA V+V+ + A L++P VDD A ++A R + K +IA+TGS Sbjct: 77 TAAIEKGAIAVIVSQPIEA----LAVPQLKVDDTRLAFGQIAAYRRQQHAKLKVIALTGS 132 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSY--------NNHIGVPLTLARMPVDVDFGIFELG 168 GKTT KEML + ++ S NN GVP+ L + + + ELG Sbjct: 133 SGKTTVKEMLRHIFTQVEAANNAEQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLELG 192 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +H+GEI + T +V+P +A I I AHL F G + IA KAEI++ L ++ T + +D Sbjct: 193 ANHVGEIAYTTAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQSLTESSTAVVPFD 252 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + L A + I+ +G + + EVQ H Sbjct: 253 DDYTQQLTAVAKQHTPHVIH-YGWQHLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFD 311 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----------CALNQG 337 + +TL + A A + G Sbjct: 312 LDSQTSVVDITLPMSGEHNVSNALAAAACAYASGIAPEVIAAGLNQATSSKGRLGRQTLG 371 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +ID++YNANP SM + + G ++ VLGD+ E+G+ S H L + ++ Sbjct: 372 MHHIIDDTYNANPNSM----RAAADVLAAQAGYKVLVLGDIGELGDASSEEHYKLGQAIA 427 Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD------VVVV 449 I + +G + + +T L +Q+ L ++ Sbjct: 428 NKAIDLLLCAGEFAVDTIAGARNQGMQQAYAFDTKAELLPKLQAVLAQNTESQQICTLLF 487 Query: 450 KSSNSCGFYRLINLLLE 466 K S S LI+ L + Sbjct: 488 KGSRSTTMETLIDDLSK 504 >gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68] gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68] gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] Length = 483 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 204/484 (42%), Gaps = 26/484 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ + ++ +A+ G IG + DSR P F AI+G DGHDF+ Sbjct: 1 MVPM-SVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAIT 114 +GA + +V+ ++ S +P V D + AL +LA R R II +T Sbjct: 60 TAGQGATVAIVDHEV----KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GE Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I LT + P+ A++ + AHL F E IA AK+EI +GL GT LN DD Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + ++ + + + + V G V G H Sbjct: 236 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353 N L + +T + L+ H + FTLID+S+NANP SM Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 355 Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 KA ++ L + + V LG M E+G + H + I + G Sbjct: 356 KAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQ 415 Query: 409 -FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYR 459 H+ AL AL V +D + VV++K S++ G Sbjct: 416 DQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSA 475 Query: 460 LINL 463 L Sbjct: 476 LAER 479 >gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR5-3] gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR5-3] Length = 459 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 18/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L T + Q + G +G++IDSR ++P + F A+ G DGHDF+ A Sbjct: 2 MSAL-TLSAIAQRLGVAYTGAS--LQFSGVAIDSRQVSPGDLFIALPGERVDGHDFVDAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V + +SIP V + L AL+++ A+R S + ++AITGS GKT Sbjct: 59 IARGAIAALVERPV-----QVSIPCLQVSNCLDALSEIGRASRDLSASVVVAITGSCGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K + S T A G+YNN IGVPLTLAR+ D + I E+G + G+I L Sbjct: 114 TVKNLCRSIFSEAGSTVATAGNYNNEIGVPLTLARLQDDTRYAIVEMGATKRGDIAHLCT 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP I + AHL F + ++A KAEI++GL +G +N D + L + + Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIYDGLGSSGAAIVNLDQPWVPLWRDRIA 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G + + +AD + ++C E S + ++G+S + + G H N L Sbjct: 234 QAGAQALSYSLDDSSADLYVSGLQECGLEGSAFTLHIRGESRALKYPLPGRHSVANALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +D + L R + TLID+SYNANP S+ Sbjct: 294 AALAIAAGLSLDQIVVGLEHAQ---AEPGRLQSERLGNDKTLIDDSYNANPGSV----RA 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + G + +LG+M E+G S H ++ E+ L I+ G V +A Sbjct: 347 AITLLAATAGESLLILGEMLELGAESPERHAEMGELARLSGITRFVGVGEAVRPAVEAF- 405 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + L + L D ++VK S +++ L E Sbjct: 406 -GANGQWFASREALTPKLADLLGASDTILVKGSRGAAMESVLSALRE 451 >gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Allochromatium vinosum DSM 180] gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Allochromatium vinosum DSM 180] Length = 452 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 196/464 (42%), Gaps = 15/464 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +WT + G G + + DSR+ + F A++G +DGH+++ Sbjct: 1 MWTLAQAIARAGGVLHG--SDVAFSSVGTDSRADCTGQLFVALRGERFDGHEYVAA---- 54 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A MV L +P + VDD L +LA A R R +IAITGS GKTT K Sbjct: 55 -AQAAGAVAAMVDQPLPLDLPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVK 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ LS + A G+ NN IG+PLTL D DF + E+G +H GEI ++T + R Sbjct: 114 EMVAAILSQAGRVRATRGNLNNDIGMPLTLLSA-RDEDFLVLEMGANHHGEIGYMTEIAR 172 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+IT AHL F +E +A AK EI GL + G ++ D + L + + Sbjct: 173 PEVALITNAGRAHLEGFGSVEGVARAKGEIARGLPEDGVFVVSGDSPYLGLWRELAEGRR 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T G + + + + E + N+ L Sbjct: 233 MLTFALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALAAS 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A + R L + ID+SYNANP S+ AAI+VL+ + Sbjct: 293 AGALALGLDRAAIAAGLESLTPVKGRLYPRLCREIGV-IDDSYNANPDSIAAAIAVLAGL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + GRR VLGD+ E+G + H ++ E + ++ G A Sbjct: 352 T----GRRTLVLGDLGELGADAARLHAEIGEQAHAAGLDRLFTVGTLSAEASRAFGAG-- 405 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + D L +++ L GD V+VK S R++ L E Sbjct: 406 AEHFADQDALLNRLKADLKPGDRVLVKGSRLARMERIVEALCAE 449 >gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17025] gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17025] Length = 481 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 253/475 (53%), Gaps = 16/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT + A G + G+SIDSR++ P + F A+K DGH F+ A Sbjct: 1 MTPLWTSDEASAATGGRATRAFSA---TGVSIDSRTLRPGDLFVALK-DQRDGHAFVAQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ + + P+ V DVL AL L AAR RS+A +I +TGSVGKT Sbjct: 57 LANGAAAALVSR--IPDGLTDGAPLLLVPDVLEALAALGRAARARSRARVIGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML AL +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L Sbjct: 115 STKEMLRAALRGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLAR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+APAHL F + IA KA I EGLE G L D +L A++ Sbjct: 175 LARPHLALITTVAPAHLEAFDSMTAIAEEKAAILEGLEPGGLAILPADLEVTPVLAARAS 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALG+ +FG+S AD++L + E + ++ G H A N L L Sbjct: 235 ALGV-PAMTFGQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAVL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357 L D+ L ++ P GRG R R AL+ F LID+++NANPAS+ A++ Sbjct: 294 AAAEALGLDLTITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAASL 353 Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 +L+ ++P GRRIA+LGDM E+G + H +A+ +L I+ V G + Sbjct: 354 ELLAAMAPTDGVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPRM 413 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL +ALPR + ET L + + GD+V+VK S +++ L + Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468 >gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Burkholderia rhizoxinica HKI 454] gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) [Burkholderia rhizoxinica HKI 454] Length = 476 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 123/474 (25%), Positives = 202/474 (42%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAALIDGATVLGDDTVAFDQVSTDSRSCGPASLFVALKGERFDAHDFLPDL 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++G V+V+ S G +P V D AL LA R R ++A+TGS GKT Sbjct: 60 ARRGVAAVLVSR----SPGDWRVPAIRVADTRAALGALAAGWRRRFALPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ G+ NN IG+PLTL ++ + ELGM+ GE + Sbjct: 116 TVKEMIASIFAAAVGHAQRLSTQGNLNNVIGMPLTLLQLAPQHRLAVVELGMNRPGETQQ 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P IA++ H + +E +A A + L GT DD + + + Sbjct: 176 LARIAGPTIALVNNAQREHQEFMATVEAVALEHASVIHALPPDGTAVFPADDPYAGIWRV 235 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I N+D ++ ++ + ++ + ++EV G H A+N L Sbjct: 236 AATDNRIVDFALRRPGANSDAAVQGTT--TDTGALRIETRAGALEVSLRAPGEHNARNAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356 +D + L F P GR + A+ T+ID++YNANP SM+AA Sbjct: 294 AATAAALAAGVGLDAIRRGLETFEPVNGRLQAKLAQAMPWAGATVIDDTYNANPDSMRAA 353 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ + ++ G Sbjct: 354 IDVLTMRQA----PRVLVMGDMGEVGDNGPAFHREVGAYARERGLDALYALGDASRDACT 409 Query: 417 ALPRSIHVHYSETMDGLF-LFIQSSL-----VDGDVVVVKSSNSCGFYRLINLL 464 A H H+ ++ + L ++ G ++VK S R++ L Sbjct: 410 AF--GPHAHHFDSAEALICALLRQDAVASERAAGATILVKGSRFMRMERVVQAL 461 >gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] Length = 452 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 115/466 (24%), Positives = 187/466 (40%), Gaps = 16/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + G G V +S DSR + F A++G ++GH F+ A Sbjct: 1 MLKELKLSQIADICGGTLFG--EDACVIDVSTDSRDDLSNKLFLALRGEKFNGHSFVDKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+V+ D S+ P V + L A + +A R + + +ITGS GKT Sbjct: 59 IDQGASGVLVDVDSGVSLE----PRIVVHNTLLAYHDIARFLRDAFQGRVFSITGSNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + K+ L +L ++NNHIGVP TL ++ + F + E G S GEI L+ Sbjct: 115 SVKDWLAQSLEDFGCVLKTQSNFNNHIGVPKTLIQIENNHQFAVVEAGTSFPGEISILSK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + + ++T + +HL F + IA K ++ + LN+DD FFE K + Sbjct: 175 TIHADVVIVTNASGSHLEGFGSTKAIAEEKGDLITYSSLYSKVILNFDDPFFEYWKGLTG 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 F S + + + + I + L Sbjct: 235 KR-----EFFSFSLSDASADLYVSDLDLGASESSCIVHFRDQSSLVTIPAPGKHQVYNAL 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L I AL+ R L + LID+ YNA+P S++AAI VL Sbjct: 290 AVIGALMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDCYNASPTSVEAAIDVL 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S P + VLG + E+G+ +S H L + + I V G D + Sbjct: 350 SMQKPIKK---WLVLGALGELGDQEESIHRGLGKYAAEKKIDCVLAVGPIAGLAVDEFKK 406 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + L F+ +L + V+VK S S ++N++ Sbjct: 407 VGREGRVYASKESLAQFLL-TLNNEHAVLVKGSRSAKMDDIVNVIK 451 >gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa] Length = 458 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 197/468 (42%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L A+ IG + +S DSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 KEML L + A G+ NN +GVPLTL ++ + ELG S +GEI Sbjct: 115 AVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L RPH+A+IT AH+ F G E+I AK EI EGL GT LN DD F+ K Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ A G + ADF+ ++ + V + Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I A + L +ID+SYNANPASM AA Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +LS S GR + VLGDM E+G ++ H ++ + +S ++ G + Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + L + + +++K S S +++ L Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450 >gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 456 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L + +G +G+S DSR IAP + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+ +IT AH+ F G E I AK EI EG+E +GT LN +D F + + ++ Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + S +V + +G H N L Sbjct: 235 GHRNILTFALADAAADFHAGELS-RDARGCPSFTMASPLGSAQVQLNLLGTHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANP S+ AA+ + Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] Length = 452 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 210/466 (45%), Gaps = 19/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T + A+ SI V + IDSR++ + FF I G DGH+F A Sbjct: 1 MN--MTLTQIASAM-ASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GA VV + + L +PV V D AL +LA A R +++A +I ++GS GKT Sbjct: 58 VENGACAVVASAPL-----DLDVPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML LS+ +T + NN IG+PL++ M D DF + ELG+S G++ L + Sbjct: 113 TVKEMLAQVLSAAGRTAKNFRNLNNQIGLPLSILEMDGDEDFWVLELGISRPGDMDELGY 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ P A++ I HL + +A KA + + + K G +N D L +S Sbjct: 173 ILAPDAALLVNIGACHLEGLGSLAGVAEQKAVLLDHVRKGGFACVNADYP---ELMQEST 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 K + G AD+ + + + ++ + + H+A+N+ + Sbjct: 230 KRSPKLVTFSGTGARADYSCLRQENVAGAISYTFRVGHEELRCTVSAGI-HVAENLAAVV 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L T ALS + P R + R G + ID++YNANP SM +I Sbjct: 289 AMAMELGMTFATIESALSAYSPVAQRFVQTR----VGTWLFIDDTYNANPVSMARSIGEA 344 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ R + VLGDM E+G S H +L +++ SH + G + +KD L Sbjct: 345 KRL--GEGKRLVLVLGDMLELGRDSVRAHRELGGLIADTGASHCFFQGRYAEDVKDGLGD 402 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + + + D V++ K S C + + L Sbjct: 403 YNGIFMKVSGAEEVLQALNAVRRDQGVMLFKGSRGCKMEQYYSALE 448 >gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 456 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 127/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L + +G +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+ +IT AH+ F G + I AK EI EG+E +GT LN +D F + + ++ Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + S +V + +G H N L Sbjct: 235 GHRNILTFALADAAADFYASELS-RDARGCPSFTMDSPLGSAQVQLNLLGTHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANP S+ AA+ + Sbjct: 294 AAAAGALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces limnophilus DSM 3776] gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces limnophilus DSM 3776] Length = 480 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 126/479 (26%), Positives = 220/479 (45%), Gaps = 25/479 (5%) Query: 7 FHDLLQAIQGHSIGI-----VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + G +G + +G +SIDSR + + F A+ DGH F+ A Sbjct: 6 LEVLATILCGTILGDQRTVAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDA 65 Query: 61 VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + GA ++ A SL + P V D + AL LA + R ++ ITGSVG Sbjct: 66 AKAGAAFAIIERHFEAEFASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVG 125 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRF 177 KT+T+ ML L + ++NN +G+PL++ + +F + E+G G+I Sbjct: 126 KTSTRSMLYEVLQARYSGRQSPANFNNTLGLPLSILELECTRDEFAVLEMGAGQRGDIAR 185 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P + VIT+I AHL+ F +A +KAE+FE L + G F D F +LK Sbjct: 186 LCEIAQPEMGVITSIGLAHLATFGTPLSVAESKAELFESLPENGVAFFPGHDPFALVLKD 245 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K+H + G+ D+ +++ + + + Q + H QN Sbjct: 246 KAH----CRTVTVGEDTVNDWTIQQVRAVRDGYRFVMDGQDYF----IRTVARHFVQNAG 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + L+ + P GR + T++D+ YNA+P++M AA+ Sbjct: 298 LAIAVGREVGISNAEIADQLAKWQPVSGRC----SLIPHPSLTILDDCYNASPSAMAAAL 353 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L ++ E R IAVLGDM E+GE+S+ H + ++ +I + G H + A Sbjct: 354 RTLEELGEREETRTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFILAVGQHADLIAKA 413 Query: 418 LPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 + + + ++ ++ ++ + +GDV++VK S S G R++ L PA++ Sbjct: 414 AKATNLSLHRLAVARDVEMAWMLLECWIEEGDVILVKGSRSMGLERIVENLRSFQPAVR 472 >gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 460 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 129/463 (27%), Positives = 212/463 (45%), Gaps = 15/463 (3%) Query: 10 LLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + QA+ G +G V+G + DSR + A G DGH+FI A+ GA Sbjct: 8 IAQAVNGKLLG--ADVVVSGSVETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCA 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKTTTKE 124 +V SIG+ V+D AL LA R I+ ITGSVGKTTTK+ Sbjct: 66 IVTNP---SIGNPEHTRILVEDATYALGLLAKVHIERLRATGDLRIVGITGSVGKTTTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L+ T A + S+NN +G+PLT + + + + E+G S +G + +LT LV P Sbjct: 123 LTAGILAKFAPTVAPVASFNNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLTGLVSP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + V ++ AHL F + +A AKAE+ EG+++ G + LN DD ++ +H + Sbjct: 183 DLGVELSVGRAHLGGFGSVAGLARAKAELVEGVKENGLVILNLDDPNVAAMETVAHTPVV 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 F N + ++ + EV+ +G A + L +S Sbjct: 243 Y----FSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAAIS 298 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 I + ++ + + + T ID+SYNANP SMKA ++VL++ Sbjct: 299 ICQGFGLELPEIVAALNGMKAASPHRMSIVESRGATFIDDSYNANPDSMKAGLAVLAKQG 358 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 H +RIAVLG+M E+GE S H ++ E++ + + G + L Sbjct: 359 EHAN-QRIAVLGEMMELGETSAQLHQEVGEMVVATQVDLLITLGEGAKEIAVPLTEKTTH 417 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ ++ ++ +V GDVV +K SN G +++ + + E Sbjct: 418 FHAGSVAEAVKLLEEKVVAGDVVFLKGSNGSGVWKVADKFVAE 460 >gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas aeruginosa PAb1] Length = 458 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L A+ IG + +S DSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEML L + A G+ NN +GVPLTL ++ + ELG S +GEI Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L RPH+A+IT AH+ F G E+I AK EI EGL GT LN DD F+ K Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ A G + ADF+ ++ + V + Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I A + L +ID+SYNANPASM AA Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +LS S GR + VLGDM E+G ++ H ++ + +S ++ G + Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEEAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + L + + +++K S S +++ L Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450 >gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter lovleyi SZ] gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter lovleyi SZ] Length = 462 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 204/468 (43%), Gaps = 17/468 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++T L G IG V+GIS DSR+I P E F ++G +DGHD++ ++ Sbjct: 1 MFTPEQLTTITHGRLIG-PETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTER 59 Query: 64 GAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 + + N + ++ V D L AL LA A R R T+I +TGS GKTTT Sbjct: 60 RIQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML L + + G+ NN IG+P L ++ + + + E+GMS GEI L + Sbjct: 120 KEMLAAILDQVDQGLKTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEPGEIDRLAEIA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I ++ PAHL + +E +A AK E+ + ++ G +N DD L H Sbjct: 180 CPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRIASL----HQN 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 SFG + +E ++ S+E+ +G H N L Sbjct: 236 PSARRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLKALGQHNIYNALAAAA- 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + ++T + L F P GR + N LID+SYNANPAS AA++ L Sbjct: 295 GLLELVGLETIAEGLEAFVPYTGRFHLETLSNN---RLLIDDSYNANPASCAAALATLQG 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDAL 418 I G R LGDM E+G H L + ++L G +A Sbjct: 352 I--KGNRRAFVALGDMLELGRDELELHRQLGIQAASV-ADRLYLLGSLTKETAGAAAEAG 408 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S + + + + + I + +GD++++K S ++ LL Sbjct: 409 LASEAIISATSHEEIARDIHTHAGNGDLILLKGSRGMKMEKIAALLRA 456 >gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 466 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ +A+ G + P V G + DSR F A G DGHD+ Sbjct: 1 MIPL-TLAEVAEAVGGRLVAADPAALVTGPVEFDSRKAGAGGLFVAFPGEKVDGHDYAAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 AV GA V+ ++ +P+ V D L A+ +LA A R T+I +TGS G Sbjct: 60 AVAGGAVAVLGTREVP------GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + T A GS+NN +G P T + D F + E G +G +R+L Sbjct: 114 KTTTKDLIAQLTVRLGPTVAPPGSFNNELGHPWTALQADQDTRFLVLEKGARGVGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +V P I+V+ + AHL F +E IA AK E+ E L G LN DD +++ A+ Sbjct: 174 CEVVPPRISVVLNVGVAHLGEFGSVENIALAKGELVESLPADGLAVLNADDPLVDVMAAR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + +G++ +AD + ++ + S V G H N L Sbjct: 234 TAA----RVVRYGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGLTGRHQVSNSL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + AL R T+ID+SYNANPAS A+ Sbjct: 290 AAAAVARELGMPLAELAAALGELGLVSTRRMD--VFERPDGVTVIDDSYNANPASTAVAL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + G GR +AVLG M E+GE + H+++ + + + + + G + + Sbjct: 348 RALAGMR--GAGRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVVGEPAAPIHEG 405 Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++S L GDVV+VK S + + + L Sbjct: 406 ATAVEDWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALR 456 >gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] Length = 458 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L A+ IG + +S DSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEML L + A G+ NN +GVPLTL ++ + ELG S +GEI Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L RPH+A+IT AH+ F G E+I AK EI EGL GT LN DD F+ K Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ A G + ADF+ ++ + V + Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I A + L +ID+SYNANPASM AA Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +LS S GR + VLGDM E+G ++ H ++ + +S ++ G + Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + L + + +++K S S +++ L Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450 >gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] Length = 453 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGQVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMTQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKYAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 456 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +LL + +G +G+S DSR I + F A+ GP +DGH+++ Sbjct: 1 MLKPMTFAELLVPLDARRVGG--DCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + +P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVEGAT----LPQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G ++I AK EI EGL+ TGT LN +D F + + ++ Sbjct: 175 SLTKPHVAMITNAGSAHVGEFGGPDKIVEAKGEILEGLDATGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + T + + + + +V + +G H N L Sbjct: 235 GNRAVLTFALADTAADLYASDLS-RDARGCPGFTLNSPLGKAQVQLNLLGAHNVTNALTA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANPAS+ AA+ V Sbjct: 294 AAAACALGVSLEGIVTGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPASINAAVDV 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+G+ ++ H ++ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] Length = 453 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] Length = 456 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L + +G +G+S DSR IAP + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+ +IT AH+ F G E I AK EI EG+E +GT LN +D F + + ++ Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + S +V + +G H N L Sbjct: 235 GPRNILTFALADAAADFHAGELS-RDARGCPSFTMASPLGSAQVQLNLLGTHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANP S+ AA+ + Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] Length = 455 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 128/467 (27%), Positives = 211/467 (45%), Gaps = 16/467 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M D G + P +G+SI+SR+IA + F A+ G DGH+F+ Sbjct: 1 MINSLRLTDAAIRFGGTLLN--PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLADV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + A +VV++ + L +P + V+D AL +LA R T+IA+TGS GKT Sbjct: 59 TDR-ASGLVVSS----ADTDLPLPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + K++++ L +A G+ NNHIGVPLTL M D DF + E+G S EI +L Sbjct: 114 SVKDLISAILGGFGTVHATKGNLNNHIGVPLTLLDMQQDSDFAVIEMGASAGSEISYLCS 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I++I + AHL F +E IA+AK EI+ GL+ GT LN D + A Sbjct: 174 IAKPQISLINNVQSAHLEGFGSVEGIAAAKGEIYSGLDTDGTAILNLDQPWQAEWMALIG 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 T + + + + S+E + ++ L Sbjct: 234 DRECITFSVDDDCADISASDIELMESGCCRFTLHLFTDMSLESQVVNLAIPGRHSVSNAL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + A + + +S + +R + +ID+SYNA+P S++AAI VL Sbjct: 294 AAAACAVAAGASIEQIVSGLEAAQSPARRLQAKDLAQGGQIIDDSYNASPESVRAAIDVL 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRR+ VLGDM E+G ++ H ++ + S I ++ G A Sbjct: 354 A----SRPGRRVMVLGDMAELGADAEQLHSEVGDYASSAGIDQLYTLGNLSAAASAVF-- 407 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLE 466 H+ ++ L + + + D ++VK S S ++++L+ Sbjct: 408 --KGHHFTDLESLKAPLFNEIEHSDLTLLVKGSRSSKMDLVVDMLVA 452 >gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Acidithiobacillus caldus ATCC 51756] gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Acidithiobacillus caldus ATCC 51756] Length = 448 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 138/463 (29%), Positives = 212/463 (45%), Gaps = 21/463 (4%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +T ++ Q G + G P+ ++G+ D+R+ F A++GP +DGHDF+ A + Sbjct: 4 YTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAARKA 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V P V D L AL LA A R ++ A+TGS GKTT K Sbjct: 64 GAAAVLVQRPSPG-------PGVLVADPLAALQVLAAAWRRELGTSLAAVTGSCGKTTVK 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L L A G+ NNHIGVPLTLA + + + E+GM+H GEI LT + R Sbjct: 117 EILAAMLRQSGPCLATRGNLNNHIGVPLTLAELGPEHRHAVVEMGMNHAGEIAVLTRMAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A+I PAH+ N I IA+AK EI EGL G +N DD + + ++ Sbjct: 177 PDLALINNAGPAHIENLGSIAAIAAAKGEILEGLSAHGIAVINGDDEYADYWAERAPGE- 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ F +W+ + ++++ ++ + G H N+L Sbjct: 236 ---VWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVSLRIPLSGRHNGANVLAATTAA 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +A+ P GR + ++D++YNANPAS++AA+ VL+ Sbjct: 293 LALNLGLDQIARAVEALTPAPGRLQWREGKGG---SRILDDTYNANPASVEAALRVLA-- 347 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 GRR VLGDM E+G ++ H + I V+ G A + Sbjct: 348 --EQPGRRYLVLGDMAELGADAELHHQQMGGHARALGIDGVFTLGSLSRTTSRAFGPA-- 403 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + L + S L VV+VK S + R++ L E Sbjct: 404 GTHFVEREALVDAVLSMLAPDAVVLVKGSRAAHMERVVAALTE 446 >gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] Length = 427 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 126/438 (28%), Positives = 199/438 (45%), Gaps = 18/438 (4%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 +ID+R + F A+KG +DGHDF A +V+ + P V D Sbjct: 2 TIDTRKVTAGCLFVALKGERFDGHDFAED-----AVAAGAGALLVSKRLLVGAPQLVVKD 56 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL + A R + A ++A+TGS GKT+ KEM+ L G++NN IGVP Sbjct: 57 TRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNNDIGVP 116 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A AK Sbjct: 117 LTLLRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAKAK 176 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EIF GL GT +N D + + + H + G +++ DF + + + Sbjct: 177 GEIFAGLPANGTAIINADSNDWPHWQEMLHNKRVWYFSPRG-AEDIDFYASDVRITPQAT 235 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + ++ + G H N L + + AD+ + L+ GR Sbjct: 236 HFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQGLAQLQAVPGRLFPI 295 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + + L+D+SYNAN SM AA VL+++ G R+ V+GDM E+G+ + H Sbjct: 296 QLSAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVLVVGDMAELGDTAVDCHR 348 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448 + E + V G L DA S + + + + L + L++ V V+ Sbjct: 349 QVGEAARQAGVDKVLSVGSLSQTLSDA---SGNGEHFQDKNTLAARVSELLLEHPVITVL 405 Query: 449 VKSSNSCGFYRLINLLLE 466 +K S S ++ L E Sbjct: 406 IKGSRSAAMENVVRALQE 423 >gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] Length = 458 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L A+ IG + +S DSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ + +P V D AL +L R + + A+TGS GKT Sbjct: 59 AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114 Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEML L + A G+ NN +GVPLTL ++ + ELG S +GEI Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L RPH+A+IT AH+ F G E+I AK EI EGL GT LN DD F+ K Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ A G + ADF+ ++ + V + Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I A + L +ID+SYNANPASM AA Sbjct: 293 ALAAAAAAHALGVPLGGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +LS S GR + VLGDM E+G ++ H ++ + +S ++ G + Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + + L + + +++K S S +++ L Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450 >gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 139/480 (28%), Positives = 218/480 (45%), Gaps = 25/480 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDF 56 M L T ++ +A+ G + Q V+G+ DSR I P F A G DGH F Sbjct: 16 MIAL-TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLF 74 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIA 112 AV+ GA L++V ++ L +P V DV+ AL +LA R + ++A Sbjct: 75 APWAVEAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGELRMVA 129 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TGS GKTTTK +L L + +T + + S+NN +G PLT+ ++ F + E+G S L Sbjct: 130 VTGSNGKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVTRSTRFLVAEMGASGL 189 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + +P + ++ T+ AH F GIE K E+ + L T LN DD Sbjct: 190 GEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRV 249 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + K+ A + FG+ A + + + + L S V + Sbjct: 250 ASMSDKTQAPVLW----FGRDARAAVRATDIVASAAGTTFTLHLPDGSTRPVSFRVLGEH 305 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + + AI +S + + L T+I+++YNA+P S Sbjct: 306 HVTNALAAAAGAWALGVDGDAI--VSALQTVQRAERWRMEVLGGNGVTVINDAYNASPDS 363 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA+ L+QI E R +AVLG+M E+GE S+ H + + NI + + G Sbjct: 364 MAAALRTLAQIRG-PEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPAR 422 Query: 413 ALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +A+ + ++E + L DGD+V+VKSSNS G L + L E++ Sbjct: 423 RLHLEAIGQGSWDGESIFAEDAAEAREILDGILRDGDLVLVKSSNSAGLRFLGDELGEKY 482 >gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 449 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 202/470 (42%), Gaps = 28/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +T + A+ G I + + + DSR I F + G DGH+F A Sbjct: 1 MN--FTVKE-AAAVFGQPI--ENETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA + + + I V V D + A +LA A + + IIAITGS GKT Sbjct: 55 KDNGAIATLWSHPTI--QPPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ ++ +TY G++NN +GVPLT+ P D I E+GM H GEI L+ Sbjct: 113 TTKDMVDAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L P A IT I AH+ N E IA AK EI GL+K G + D+ + Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLLDPFVPNLT 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G + E+S + +G + +N L+ + Sbjct: 233 QTIETFGLTEGDLQGD---------IVEESQDQTIFTVAGTTFTLPVLGGYNVKNALIAI 283 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + + L+ F + R + ++ + YNANP +M + Sbjct: 284 GLGRHFGVSNEAIKEGLAHFQLTKNR---TQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ EGRRIAVL DM E+G S H +A L V+L G + AL+ L + Sbjct: 341 RKLPL--EGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAQ 397 Query: 421 ---SIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + V Y T + L ++ +L D +V+K SN G +++ L Sbjct: 398 SPLADKVRYFATDEKPQLIASLKETLEPSDSLVIKGSNGMGLSEVVDALK 447 >gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] Length = 474 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 131/481 (27%), Positives = 208/481 (43%), Gaps = 25/481 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ QA QG + ++ I+ D+R++A Q F A+KG ++D H F+ + Sbjct: 1 MIRL-TLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDN 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 A+ GA ++V I + V D AL L+ R + K IAITGS G Sbjct: 60 AISTGAKALLVEQA-----SDHDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNG 114 Query: 119 KTTTKEMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 KTT KE+L+ L + + G++NN IGVPLTL R+ + F + ELG +H GE Sbjct: 115 KTTCKELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGE 174 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I + LV+P +A+I I AHL F + +AS+K EI+ L+ GT +N D F + Sbjct: 175 INYTAQLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQT 234 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHM 292 ++ A G A+F + + + + Sbjct: 235 YLSQLQAQGQCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPICTGTQSISLKIPG 294 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+ L + S+ A + G R F T+ID++YNAN AS Sbjct: 295 QHNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEVNDFLTIIDDTYNANSAS 354 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 +KAAI+VL S + +L DM E+G ++ H + E ++ N+ + G H L Sbjct: 355 VKAAINVLCATSTK----QALILSDMGELGTHTELEHQKVGEYAAMQNVPLLLAVGTHSL 410 Query: 413 ALKDALPRSIHV----HYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLL 465 +A + L FI+ L +++K S S ++ + Sbjct: 411 HTVEAFNLHCKGQQKAQHFANKTQLKTFIKEYLDKNEQLTTMLIKGSRSAKMEEIVAFIT 470 Query: 466 E 466 + Sbjct: 471 K 471 >gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 473 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 201/468 (42%), Gaps = 14/468 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + +++ + + GI D+R+ + F A+KG +D H+F+ A Sbjct: 1 MRAM-DLQTIVKVTGAKILSQK-ETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKA 58 Query: 61 VQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V++GA ++V + + + V D L AL KL AR S A I+ ITGS GK Sbjct: 59 VEQGASGLLVHEENALIEKLKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE + S + GS+NNH GVP TL ++P + D I E+GM+H GEI L Sbjct: 119 TTTKEFTAALVGSSMDVHYNKGSFNNHWGVPFTLLQLPPNKDVAIIEMGMNHAGEITELV 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKA 237 H+ P + V T + AH+ F IE++A AK EI+E G + L+ + +KA Sbjct: 179 HIAEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYVKA 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + + AD L + ++ + G++ G N++ Sbjct: 239 RDKFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLM 298 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L R + + +I ++YNANP SMKA I Sbjct: 299 AAASVGLAVGMTPAQVWAGLPACK---TNWGRNQLVHLKSGAQMIFDAYNANPDSMKALI 355 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + ++ GR++ V G M E+G S + H +L + V+ G A Sbjct: 356 DNMKLLTV--PGRKVGVFGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDDADAFAKG 413 Query: 418 LPRSIHVHYS----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 L + + + + + D + L GD+ VVK+S R + Sbjct: 414 LSSAGYKNLALIEKDYKDSSGQDLAGFLKTGDIAVVKASRGTKLERFV 461 >gi|51246753|ref|YP_066637.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein [Desulfotalea psychrophila LSv54] Length = 1014 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 127/481 (26%), Positives = 199/481 (41%), Gaps = 36/481 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L+ A G IG + + G ++ DSRS+ F A++G ++DGH ++ V Sbjct: 542 WTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAA 601 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGK 119 GA +VV + L+ P V D AL +A A R T ++ ITGS GK Sbjct: 602 GAACLVVEK----ARPDLTCPQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGK 657 Query: 120 TTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 TT KEM L+S+ G++NN IG+PL+L + + E+GM+ Sbjct: 658 TTIKEMTASILASLWPAGAEYPENVVLKTEGNFNNLIGLPLSLLPLDNMHRAAVLEMGMN 717 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 GEI L + +P I + + AHLS IE +A AK E+F + +N DD Sbjct: 718 SPGEIARLAEIAQPDICCVANVHAAHLSGLGSIEGVARAKEELFAHAPVDSILVVNLDDP 777 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIG 289 + YS + +AD S L +S V +G Sbjct: 778 HVVEMAKGYEQKK--ICYSLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLDTLG 835 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N L GI A L + R +T+I + YNAN Sbjct: 836 EHNVSNALAAAGIALAAGASPQQIALGLGSYKTPSKR---LERIRTSCNWTIISDCYNAN 892 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 PASM A + L+ ++ + IA++GDM E+GE ++ H + + ++ ++ + G Sbjct: 893 PASMSAGLRTLATVAGEKK---IAIVGDMLELGEFAEEAHRQIGSLAGELSLDYLLIVGE 949 Query: 410 HVLALKDAL----PRSIHVHYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRL 460 L+ A V + + + ++Q+ L + D+V +K S L Sbjct: 950 FASFLQQAALNSGMGKEQVLVFPSKEAIIDWLQAYQADGGLGEKDIVFIKGSRGMQLETL 1009 Query: 461 I 461 I Sbjct: 1010 I 1010 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 73/481 (15%), Positives = 137/481 (28%), Gaps = 71/481 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84 V ++ DSR +A F A +G DGH ++ A+ +G +V+V V+ P Sbjct: 40 VADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYAHCPAL 99 Query: 85 VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D A K+ K +++ ITG+ GKTT +L L+ + IG+ Sbjct: 100 VIEVADSQAAYGKILANYFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLGHQVGVIGT 159 Query: 143 YNNHI--------------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 NN V L RM + + +S + + Sbjct: 160 VNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVI-MEVSSHAISQARIGAL 218 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIA------SAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 R +A+ T ++ HL +E+ ++ +G+ + F + L Sbjct: 219 RFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQTEFLQRLH 278 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQGKSMEVVHHGIGYHM 292 + G S+G+ +D QL ++ ++ Q + G Sbjct: 279 RQL--AGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLVGRFNID 336 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 ++ ++ P + + Y P + Sbjct: 337 NLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVD-YAHTPDA 395 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + +S L + G IAV G G L ++ V ++ + Sbjct: 396 LDKLLSTLGDVPH---GDLIAVFG----CGGDRDKGKRPLMGAVAARLADVVIVADDNPR 448 Query: 413 --------------------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 L + D+ Sbjct: 449 TEASEPILAEIVVGVAEQAMPLRNPDWLFERKANERGCVVVGDRRRAIDLAVHMACSKDI 508 Query: 447 V 447 + Sbjct: 509 I 509 >gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] Length = 455 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 189/458 (41%), Gaps = 17/458 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++ +QG G + + DSR+I + F A+ GP +DGH F+ KGA Sbjct: 7 LNEIAGPLQGALAGD--DVTFDSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 +V ++ L +P V D AL +L R + A+TGS GKTT KEML Sbjct: 65 AALVQR----TMPELGLPQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEML 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + A G+ NN +GVPLTL + + + ELG S +GEI + L RP + Sbjct: 121 ASILRTRGPVLATRGNLNNDLGVPLTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQV 180 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+IT AH+ F G E+I AK EI EGL G LN DD F++ + + A G + Sbjct: 181 AIITNAGTAHVGEFGGPEKIVEAKGEILEGLPADGIAVLNRDDPAFDIWQRR--AAGRRV 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + +ADF R + + + + + + Sbjct: 239 LSFALDASDADFLARDIQPDARGCPAFTLRGPAGEARIQLNLLGRHNVANALAAASAAHA 298 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 I+A + A +ID+SYNANPASM I Sbjct: 299 LGMPLVGIRAGLESLQPVKGRAVAQFA--PSGVRVIDDSYNANPASM----RAAIDILAG 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 GR + LGDM E+G ++ H + + + ++ G + A + + Sbjct: 353 FSGRTLLALGDMGELGAWAEEGHRQVGAYAA-GKVDALYAVGPLMTHAVAAFGKGGR--H 409 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 GL + S +++K S S ++++ L Sbjct: 410 FADQAGLLEALCSEQHPDTTILIKGSRSAAMDKIVSAL 447 >gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] Length = 430 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 127/439 (28%), Positives = 202/439 (46%), Gaps = 22/439 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+ D+R+I FFA+KG +++G++F A+++GA VVV+ Sbjct: 14 SGVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKEH---YIL 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V +VL +L KLA+ R I+AITGS GKTTTKE++ L KT A G+ NNHI Sbjct: 71 VQNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M +FGI E+G +H EI FL + P IT AHL F +E + Sbjct: 131 GVPLTLLSMDDHTEFGIVEMGANHPLEIEFLCTIANPDYGYITNFGKAHLEGFGSLEGVV 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK E+++ L++ + D + +SFG+S AD Q Sbjct: 191 KAKTELYKNLQERHKLIFLNIDDEVQR-----KHENYNHTFSFGESNEADVQ-----LSY 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + QL + + G + A+NM L I + ALS + P Sbjct: 241 QSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKFEEIQTALSNYSP----D 296 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 LN T+I ++YNANP SM AA+ Q+ + + IA+LGDM E+G + + Sbjct: 297 NNRSQTLNTASNTIIMDAYNANPTSMHAALENFKQLKTNKQK--IAILGDMFELGSSAVT 354 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +A + + + +L G + S + ++++ L ++ + Sbjct: 355 EHQIIANYVQNSDFAETYLLGDNFKNTNT---SSNFIFKFKSIESLKEHLKETDFQNCYF 411 Query: 448 VVKSSNSCGFYRLINLLLE 466 ++K S R+++ + + Sbjct: 412 LIKGSRGMALERVLDSIKK 430 >gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG] gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF] gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] Length = 473 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 122/472 (25%), Positives = 197/472 (41%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + I P+ V G + DSR++ F A G DGHD+ Sbjct: 1 MIAL-SLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 G V V + L +P VDDV AL LA R +IA+TGS G Sbjct: 60 -------GAVAAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVERLGTAVIAMTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ LS T G+ NN IG+PLT R+ + + E+G +G IR+L Sbjct: 113 KTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTEETRHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L ++G LN DD + + Sbjct: 173 TSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + FG++ +A+ + L+ + Y Sbjct: 233 TRARVLL----FGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEVTLRLYGEHHVSNA 287 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + AL + + R T+++++YNA+P S++AA+ Sbjct: 288 LAAAAVAHELGMPAEEIALGLSEARSLSRWRMEVTERPDGVTIVNDAYNASPDSVRAALR 347 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 L + + GR AVLG M E+G+ S + H + + N+S + G L Sbjct: 348 ALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWL 407 Query: 415 KDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + ++ L GDVV+VK+S + G ++ Sbjct: 408 RMGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLVKASRAAGLEKVAQ 459 >gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. Fw109-5] gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 205/468 (43%), Gaps = 11/468 (2%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P ++ +L A G +G P + G+S D+R+I P F A++G +DGH ++ Sbjct: 1 MTVPRFSPDELAAATGGRWMGAPP-AELAGVSTDTRTIVPGALFVALRGERFDGHAYLGE 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + +PV V D L AL +A R R ++ +TGS GK Sbjct: 60 ASA---KGAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTT+EM+ L++ G+ NN +GVPLTL + + + E+GM+H GEI L Sbjct: 117 TTTREMIAGILATRGPVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIARLA 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P++ V+T A AHL ++ +A AKAE+++GL+ TG + N DD +LK Sbjct: 177 AIAEPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDP--RMLKRAQ 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A ++ G + D + + + V G VH + Sbjct: 235 AAGKRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGLVGAHNAVNAA 294 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ A G+R R L+D+ YNANPASM AA+ Sbjct: 295 AAAAAAISLGCSDREIAQ-GLAAVRPVGRRLRLERLASGLRLVDDCYNANPASMSAALRT 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDAL 418 L ++ + R +AVLGDM E+G + H +L + + + G + A Sbjct: 354 LVDLA-RPDARAVAVLGDMLELGAFEEPAHRELGGEAARAGVRLLAAFGPRSRATAEAAR 412 Query: 419 PRSIHVHYSETMDGLFLFIQ-SSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +++ MD L + + + DV++VK S RL+ L Sbjct: 413 AAGLETFHTDDMDALVRWARTALAPPSDVLLVKGSRGMKLERLVEALR 460 >gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] Length = 471 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 115/466 (24%), Positives = 181/466 (38%), Gaps = 9/466 (1%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L+Q P+ ++ + DSR++ P F ++G +DGH F+ +AV+ Sbjct: 5 LSQLVQLWGQPLWAGGPRPDLSEALGPVCTDSRTLEPGSFFIPLRGERFDGHRFLANAVE 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA V D ++ + + V+D L A +LA R + A ++A+TGS GKTTT Sbjct: 65 RGAQAAFVARDCAHAVPD-GLLHWRVEDTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ AL+ + A + NN IGVPLTL + + E+GM GEI L+ Sbjct: 124 RELIRSALAPLGDVQASDSNNNNDIGVPLTLLGAHREHAAVVVEMGMRGAGEIERLSRCA 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IAVIT I AH+ IASAK EI L G + + D+ E ++ Sbjct: 184 EPQIAVITNIGTAHIGRLGSRAAIASAKCEITAALSPLGIVVIPAGDALLEDALSRCWTG 243 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I + G ++ S + E L Sbjct: 244 RILRVALDGDEPENGPEVSG--LTSGDLPTPDLVGHFLPEDQSLAFNGLRFHCPLEGRHN 301 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + A + + + N+ + + A+ Q Sbjct: 302 ARNFMLALAVAQELKVSLQTIQALDVQVPGGRNRRLSLGGIALLDETYNASPEAVFAALQ 361 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPR 420 + H GRR AVLG M E+G S H +A+ + + + G A++ A Sbjct: 362 LLAHQPGRRYAVLGTMLELGSRSVDLHRRVAQKAVDLQLDGLVVVAGGEEGEAMEVAAGS 421 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ET + L + L GD V++K+S RLI L Sbjct: 422 LSRFERVETPEQAALPLAEWLKPGDTVLLKASRGVALERLIPSLQN 467 >gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 456 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MLKPMTFSELVVPLDSRLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+A+IT AH+ F G + I AK EI EGL+ GT LN +D F + + ++ Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + T + + + + + V + +G H N L Sbjct: 235 GNRNVLTFALTDSAADVYASELS-RDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ + L+ P +GR + +ID++YNANPAS+ AA+ + Sbjct: 294 AAASCAMGVPLEGIVTGLNNVQPVKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+G+ ++ H ++ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448 >gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] Length = 464 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 194/470 (41%), Gaps = 24/470 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + G G ++ +S D+R++ P + A++G +DGHDF A + Sbjct: 5 LLSL--IAHWAGGEIHGD--DVAIDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++V + + +P V D AL K+A + + AITGS GKT+ K Sbjct: 61 GASALLVER-----LLPIELPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVK 115 Query: 124 EMLTIA-----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +L + K YA G+ NN IG+PL + P D D+ ++E+G G+I +L Sbjct: 116 SLLLSILQQVARHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + RP A++ IAPAHL + +A K I+ L G +N DD++ + Sbjct: 176 TDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQH 235 Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +G AD R + ++ S + VV G H N L Sbjct: 236 FVGTPARCRVLRYGLEHTADVTARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNAL 295 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + ++ L+ P GR ++ L+D+SYNANP S+ AAI Sbjct: 296 AAASLALAAGIELALVAAGLADAQPVPGRQIAHQL---HNGAVLVDDSYNANPGSLAAAI 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ G VLGDM E+G +++ H + ++ G A A Sbjct: 353 DALAAAPEEG----WLVLGDMRELGPDAEALHAQAGLRARAAGLKRLYALGPLSAAAATA 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T D L ++ L G +VK S ++ LL + Sbjct: 409 FGEGGR--HFATHDALSQALKDELHAGVRCLVKGSRGSAMDTIVKALLAQ 456 >gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 423 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 123/443 (27%), Positives = 201/443 (45%), Gaps = 20/443 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T ++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G + A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA--- 400 Query: 421 SIHVHYSETMDGLFLFIQSSLVD 443 S + L + + L + Sbjct: 401 SGVGEHFADKAALIARLHALLQE 423 >gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 456 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L + +G +G+S DSR I P + F A+ GP +DGH+++ Sbjct: 1 MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119 KGA +V ++ + ++P V D AL +L R + A+TGS GK Sbjct: 59 AAKGAVGALVEREVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L + A G+ NN +GVPLTL + + + ELG S +GEI + Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTV 174 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +PH+ +IT AH+ F G + I AK EI EG+E +GT LN +D F + + ++ Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I T + + + + +++V + +G H N L Sbjct: 235 GHRNILTFALADAAADFYASELS-RDARGCPSFTMDSPLGNVQVQLNLLGTHNVTNALAA 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L ++ + L+ P +GR + +ID++YNANP S+ AA+ + Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + A Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSAMYAVGPLMTHAVSAF- 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H ++ + L + + +++K S S ++ L Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448 >gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] Length = 453 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 205/471 (43%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + IG + ++ D+R + F A+KG + HA Sbjct: 1 MIPV-SLQALADVLSAELIG--ADCQIIEVTTDTRQVTAGCLFVALKGERF-----DAHA 52 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ + +P V D AL +LA R + A ++A+TGS GKT Sbjct: 53 FAADAVAAGAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L + G++NN IGVPLTL R+ DF + ELG +H+GEI + T Sbjct: 113 SVKEMAAAILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL G +N D++ + ++ + Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQSMLN 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S ++ DF ++ + + + + G H N L Sbjct: 233 DKTVWR-FSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A ++ + L GR N L+D+SYNAN SM AA VL Sbjct: 292 ALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTEN---KLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G ++ H + E L I V G AL A Sbjct: 349 AEMP----GYRVMVVGDMAELGADAEECHRQVGEAARLAGIDKVIGIGPLSQALCAA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 S + + + + L + V V++K S S +++ L E+ P Sbjct: 402 SGSGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQEKAP 452 >gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] Length = 448 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 138/471 (29%), Positives = 209/471 (44%), Gaps = 31/471 (6%) Query: 1 MN---PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M PL ++L A H G + V G++ D+RS+ PQE F A G ++DGH F Sbjct: 1 MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 AVQ+GA +V+ + A+ P V D L A +L R + + IIAITGSV Sbjct: 61 ESAVQQGAIAAIVDHPIDAAT-----PQLVVPDTLVAYQRLGQWWRQQFQIPIIAITGSV 115 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE+++ L + +YNN IGVP TL + D D+ + E+GM GEI Sbjct: 116 GKTTTKELISAVLGTAGSVLKTEANYNNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAE 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ + +P I VIT + AH+ E IA AK E+ + LN D+ LL Sbjct: 176 LSQIAQPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQMPAESLAVLNADN---SLLIE 232 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + ++G + + LQ G H A N L Sbjct: 233 TAQTVWSGAQVTYGL----------DSGDLQGQLADQTLQVADHSFPLPLPGAHNALNYL 282 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L I L D+ + +S+ P R ++DE+YNA SM+AA+ Sbjct: 283 AALAIAQHLHLDLAPLQQGISLELPSGRA----RKLTLPNDVVVLDETYNAGLESMQAAL 338 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415 +L+Q RIAVLG M E+GE + H + ++ NI + + G AL Sbjct: 339 HLLAQTPGER---RIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLILDQGPEGTALA 395 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ L ++ + GD ++ K+S+S G R+++ + Sbjct: 396 AG-TTTVPTEQFAEHQALMDYLDQHIQPGDRLLCKASHSVGLDRIVDHFTQ 445 >gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 461 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 214/477 (44%), Gaps = 22/477 (4%) Query: 1 MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L T ++L+ ++ ++G+ + + +DSR A F+ IKG +D H F+ Sbjct: 1 MLKLDLTIGEMLEILETEAVGVPARTLKRKVNLCMDSRESAKGVVFWPIKGARFDAHQFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + GA + VVN + + P V+D AL KLA + K +AITGS Sbjct: 61 SQMEKDGALMSVVNQTAIDPNFKMYAP---VEDTTKALLKLAKGYQRLFKLKKVAITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM LS T+A G++NNHIGVP+TL ++ + + E+G S EIR Sbjct: 118 GKTTTKEMTKAVLSMKYNTHATKGNFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRP 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L+ P IAVIT I +HL ++ + + K I GL++ GT+ +N DD +KA Sbjct: 178 LSLATEPDIAVITNIGASHLERLGDLDGVFNEKINITAGLKENGTLIVNADDERLCKVKA 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 H + G K + + + V + G H + L Sbjct: 238 TKHYKVVTFGVRRGVVKPEKLKWTEN--------LCADFYVGRTHFVLNVPGDHNLYDAL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L KAL+ F R N F +I + YNANP+S K A+ Sbjct: 290 AAIAVGQALRIPKGDIAKALAGFTSTSMRM----EIKNANGFKVISDCYNANPSSTKMAL 345 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L + EG+RIAVLGDM E+G+ S + H + ++ N + G + Sbjct: 346 QTLGNMRV--EGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLLAVGKDAKKYVEG 403 Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +V Y ET+ + + + +GD+++VK S +++ LL P + Sbjct: 404 AKSRGMKNVQYFETVPEVISMLGEVVAEGDILLVKGSRGMHMEQVVEALLHMVPVFK 460 >gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Mucilaginibacter paludis DSM 18603] gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Mucilaginibacter paludis DSM 18603] Length = 433 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 114/434 (26%), Positives = 183/434 (42%), Gaps = 17/434 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R I P FFA+KG +D + F A+ GA V++ ++S VD Sbjct: 16 ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNGDY----NVSQKCILVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L LA R + + +TGS GKTTTKE++ LS TYA G+ NNHIGV Sbjct: 72 DVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ + V+ + E+G +H EI L + +P +IT + AHL F G E + Sbjct: 132 PLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGGAEGVKKG 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ + + + ++L + + +G + + Sbjct: 192 KGELYDYLKTSKGVIF--VNQDSKVLTDMVAERALTDVQYYGSDIGNNISGELLENSPYL 249 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V G + N+L + I D LS + P Sbjct: 250 KLRWKIKNEAYHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDEINTGLSGYQP----HNN 305 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + TLI + YNANP+SM AI + ++ GR++ +LGDM E+GE S H Sbjct: 306 RSQIVKTASNTLICDYYNANPSSMFVAIENIGKLPA---GRKVVILGDMFELGEESAVEH 362 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + I G + ++ + +++ +S V +++ Sbjct: 363 ESVIQKAMQTAIDERIFIGAEFYKQSEL----VNATFYRSVEDAIGAFKSRPVKNATILI 418 Query: 450 KSSNSCGFYRLINL 463 K S RL++L Sbjct: 419 KGSRGMALERLVDL 432 >gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] Length = 475 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 187/466 (40%), Positives = 261/466 (56%), Gaps = 4/466 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLW+ L+ A+ G + G+SID+R++ + FFAIKG DGH+F+ A + Sbjct: 5 PLWSGLALVGALHARVSGALA-REATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFE 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA V++ A P+ V DV +L L AR RS A I AITGSVGKT+T Sbjct: 64 KGAAAAVIDEAHAAEFSGAG-PLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M + LS +T+A + SYNN GVPLTLARMP FG+FELGM+H GEI L V Sbjct: 123 KDMTRLMLSRFGETHASVASYNNQWGVPLTLARMPAASRFGVFELGMNHAGEITGLVAQV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+AV+T +A HL +F+ +E IA AKAEIF L+ I D ++ L A + Sbjct: 183 RPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSALDGGVAIINRDDATYERLAAAAAPTA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G I+SFG+S+ A+ +L +K + +E + GK + G H+A N L L I Sbjct: 243 G--HIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALLI 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ DV+ A L+ F P GRG R + G FTLIDESYNANP SM++A +L Sbjct: 301 AAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSMRSAFELLGA 360 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +P GRRIAVLGDM E+G H +LA L+ ++ +G + +L A P ++ Sbjct: 361 TTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFTAGPLMASLYYAAPNAM 420 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + T L + ++L GDVV+VK SNS R++ + ++F Sbjct: 421 RAAHRRTALELEEAVLAALRAGDVVMVKGSNSSRMSRIVAAVRQKF 466 >gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 459 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 123/463 (26%), Positives = 192/463 (41%), Gaps = 17/463 (3%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + + G + + GISIDSR+I + I G +DG FI G Sbjct: 5 NLEEIAKMLGGEISNPKYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +++ + S+SIP V D AL LA A R IIAITGS GKTT+K Sbjct: 65 AVAFLID-ENYKIPKSISIPFVKVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKN 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ LS K G+ NN IGVPLTL G+ E+G GEI LT++ +P Sbjct: 124 LIHSVLSEKYKVEKTQGNLNNEIGVPLTLLDFSDKTQIGVVEMGTEDFGEISLLTNIAKP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I AHL E IA AK EI EGL+ GT N DD + + Sbjct: 184 DMAMITNIGDAHLLKLKSREGIAKAKLEILEGLKADGTFIYNGDDEILKKVLPSYTIK-- 241 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + S+GK +F+ E S + ++ + +G H N + + I Sbjct: 242 QKTISYGKEDGVNFK----VYPKEFSSTYTKFSYENEDYKVPLLGTHQVYNGALAVLIGK 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + L+ R + ++D++Y +NP S+K + + + Sbjct: 298 LFNLSYEEIDNGLAKVSNNANRNELIERNGFD----ILDDAYKSNPQSLKQGLELAGFLD 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + I VLGDM E+G+ ++ H + I++ G + A + Sbjct: 354 GYLNK--IVVLGDMLELGDGEKNLHYKSGLDIKPKKINYCLFYGPLCKEMYKASLENFPE 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y E + L ++ + +V VK S +I + Sbjct: 412 NRSFYFENKNDLIDKLKFLITKSTLVFVKGSRGLHMEEVIEAI 454 >gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 471 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 121/473 (25%), Positives = 188/473 (39%), Gaps = 19/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + I P V G + DSR + F A G DGHDF Sbjct: 1 MIAL-SLAEIAAVVGGQTYDIPDPAVQVTGPVVRDSREVESGSLFVAFAGERVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +V V + + +P VDDV AL LA R AT++A+TGS G Sbjct: 60 -------AVVEAGAVAVLASRPVGVPAIVVDDVQTALGALARHVVERLGATLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L S T GS NN IG+PLT + F + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLTALSATEETKFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L P + ++ + AH+ F G E+IA AK E+ EGL + + L Sbjct: 173 ADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGELVEGLPPAEDG-GAAILNADDPLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG+S AD + + + V + Sbjct: 232 MASRTKARVILFGESDEADVRAENVRLTAGGQPSFSLHTPSGCSDVTMRLY-GEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 291 LAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALR 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414 L+ + R AVLG M E+G+ + + H + + N+ + G L Sbjct: 351 ALA--AMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 408 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LLE Sbjct: 409 AYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 461 >gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 453 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 217/469 (46%), Gaps = 21/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P HD++ ++ GI P + ++ DSR+I F A+ G +D H F +A Sbjct: 1 MIPFM-LHDIITILRAKVYGINP--MIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++VN + L+IP V+D L AL +L+ R + A +IA+TGS GKT Sbjct: 58 VLAGASAILVNRQL-----PLNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L K A G+ NN IGV LTL R+ DF I ELG +H+GEI + Sbjct: 113 SVKEMTASILRQCGKVLATQGNLNNDIGVSLTLLRLTPQDDFAIIELGANHIGEISSNAN 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P IA++ I+ +HL+ F + +A AK EIF L G + LN + + + + Sbjct: 173 LVLPEIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVILNENSNDWLNW-QQGS 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K+ N F K + + S +V +G H N L Sbjct: 232 KCKTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQGSCQVQLPMLGKHNITNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A++ LS P GR + + LID+SYNAN SM AA VL Sbjct: 292 ALAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVG---KLLIDDSYNANVNSMIAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G + V+GDM E+GE +H + + +++ I+ V G + + Sbjct: 349 SEMP----GYLVMVVGDMAELGEKEIKYHQQVGKFIAMVGINKVLSIGNLSYIISN---T 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467 S + L + L+ ++ ++VK S + ++I L E+ Sbjct: 402 SRRGEHFNNKSALTNRLIQLLLKYNIITILVKGSRNTTMEQVIQELKEK 450 >gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter heparinus DSM 2366] gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter heparinus DSM 2366] Length = 433 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 116/435 (26%), Positives = 201/435 (46%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R+I P FFA+KG +D + F A++ GA +++ + + V Sbjct: 17 VCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEAY----QTNERCLLVS 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL LA R + ++ +TGS GKTTTKE++ LS KT+A G+ NNHIGV Sbjct: 73 DVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYKTFATRGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ + +++ + E+G +H EI FL + +P +IT I AHL F G E + Sbjct: 133 PLSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLITNIGMAHLDGFGGFEGVKKG 192 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KAE+F L++ ++ L S + + +G + + K Sbjct: 193 KAELFAYLKQHSGFAFINRNN--PYLLEMSEKAQLSKVVYYGTESSNTVAGKLLKTDP-F 249 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + Q + + + G + +N+L + I LS + P R + Sbjct: 250 IELSWQSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVEINAGLSGYFPNNNRSQL 309 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N T+I + YNANP+SM AA++ + + + ++GDM E+GE S H Sbjct: 310 TKTASN----TVICDFYNANPSSMAAALTNIELLKGSNK---TVIIGDMFELGEESAKQH 362 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +++ E +I+ + G H K + H+ T F++++ + ++++ Sbjct: 363 LNIIEQAEKLDIATLIFIGKHFYHAKQ----NHKGHFFATPAEAAAFLKTNPLKNALILL 418 Query: 450 KSSNSCGFYRLINLL 464 K S +L+ LL Sbjct: 419 KGSRGMALEQLMPLL 433 >gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] Length = 457 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 145/448 (32%), Positives = 214/448 (47%), Gaps = 21/448 (4%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 V I+ D+R++ E F A+KGP++DGH FI A QKGA V+V+ + + Sbjct: 17 DNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVDHKV-----DVD 71 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 I F V+D AL + A + IAITGSVGKTT KEM LS A G+ Sbjct: 72 IAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGN 131 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NN IGVPLTL R+ F + ELG +HLGEI + T + +P +AV+ +APAHL F Sbjct: 132 FNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGS 191 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + +A AK EIF+GL++ G +N D F + K IK F S+ D Sbjct: 192 LMGVAKAKGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIKR---FSTSEKLDIWAED 248 Query: 263 WKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + ++ + + K + V G H N L+ + S L +D AL+ Sbjct: 249 ISLDANARASFTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALATMG 308 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 +GR + T++D++YNAN S+KAAI +LS + +G RI LGDM E+ Sbjct: 309 DVKGRVNLIEVS---DMLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGEL 361 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ--- 438 GE ++ +H ++ E I ++ G D + + D + IQ Sbjct: 362 GEDARKYHQEVGEYALEKGIDELFTLGVLSKCASDVFALANR--HFSNRDQMQQQIQATI 419 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + +VVK S S L+ L+ Sbjct: 420 NQVNKKTTIVVKGSRSSRMELLVTDLVN 447 >gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. 383] gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. 383] Length = 468 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 111/474 (23%), Positives = 192/474 (40%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ + +S DSR+ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V +++P + AL LA R R ++A+TGS GKT Sbjct: 60 AARGASAALVAH----VPAGVTMPAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + E+GM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEI 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + + V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDAGRQNDAQVTGRLHGGELAIDTPAGVVTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + + L F P +GR + + T++D++YNANP SM+AA Sbjct: 293 AATAAALGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + L + ++ ++VK S R+++ L + Sbjct: 409 AYGDTAR--HFGDVGALVEALLAAGYGAQA--TLLVKGSRYMKMERVVDALTNQ 458 >gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 453 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLSSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp. MZ1T] gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp. MZ1T] Length = 470 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 127/469 (27%), Positives = 200/469 (42%), Gaps = 21/469 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + HD +A+ H +G + + D+R++AP + F A++G +DGHDF+ A + Sbjct: 1 MMSLHDATRALACHGARATGEGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ A +P+ VDD AL LA A R R +I +TGS GKTT K Sbjct: 61 GAAAAMVDAAWSAGKADAGLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVK 120 Query: 124 EMLTIALSSIKKTYACIGSY--------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 EM L NN IG+PLTL + + E+GM+H GEI Sbjct: 121 EMCAAILRVQASRDGFGEESVLATRGNLNNDIGMPLTLLELRDFHRAAVIEMGMNHPGEI 180 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +L+ L +P +A++ AHL ++E+A K I+EGL G +N DD Sbjct: 181 GYLSALAQPTVALVNNAQRAHLQGMGSVDEVAREKGAIYEGLGGAGVAVINADDPHAGYW 240 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ + I +FG AD R S +E+ + ++ G H +N Sbjct: 241 RSLNAGRPI---VTFGIDHPADVSAR-CTLRGLGSRLELDIPQGKIDFALQVPGLHNVRN 296 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L ++ + L+ F GR + ++D+SYNANP S++ Sbjct: 297 ALGAAAACLAAGVPLEAVAEGLAGFAGTRGR---LQRRSGPRGALILDDSYNANPDSVRV 353 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+ + G VLGDM E+GE S H ++ I ++ G Sbjct: 354 GIDVLAAMP----GHTWLVLGDMGEVGETSAQVHDEVGGYAKSKGIDGLFALGEMSAVAA 409 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +++ L + L VV+VK S R+ + L Sbjct: 410 HNFGEGAR--HFTSVEALVKALVPRLDADSVVLVKGSRFMRMERVADAL 456 >gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] Length = 455 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 201/475 (42%), Gaps = 24/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M ++ + + +G ++ DSR I P + F A++G +DGHDF+ Sbjct: 1 MATFFSPFQIQLGLGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVA 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA +V+ D + + VD+ L A ++A R R +I ITGSVG Sbjct: 61 QALADGAIAAIVDRDYQPPSDLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRF 177 KTTTKE++ L+ +YNN IGVP T+ ++ D + + E+GM G+I Sbjct: 121 KTTTKELIAAMLAVRGPVLKPEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAE 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P+IAVIT + AH+ + IA AK E+ L TG LN D+ L A Sbjct: 181 LARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIA 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + L + ++G Q L + G H A N L Sbjct: 238 TAQRLNLPRCRTYGLQNGD---------LQGQLIDLETLVVEGQRFRLPLPGAHNALNFL 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L I L D + R R L+DE+YNA SM + Sbjct: 289 AGLAIAQELGLDWEAFR-----DLSVTLPQGRARRIELSPDIVLLDETYNAGLESM---L 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416 + L ++ RRIAVLG M E+G+ S+++H + E + + + + A Sbjct: 341 AALQLLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYADPTEAAAMQ 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 A +I + L ++ S+ GD ++ K+S S R++ + + A+ Sbjct: 401 AGASAIATQIFTNAEDLLSELRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455 >gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 458 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 192/445 (43%), Gaps = 11/445 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSI 83 G+S DSR++ P + A+ G DGHDF+ A GA L +V+ D+ S Sbjct: 13 TGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHA 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDDV A++ LA A R KA I+ +TGSVGKTTT+ ++ L+S + G++ Sbjct: 73 AVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGNF 132 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN +G+P TL + + + E+GM LG+I L + RP VIT + +HL Sbjct: 133 NNELGMPYTLLQTEPSCEVLVLEMGMDGLGQIADLARIARPKYGVITNVGVSHLERLGTR 192 Query: 204 EEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + IA AKAE+ EG + G FL D + + + + A+ + + Sbjct: 193 DNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIRIVRFDGTAENSDVYA 252 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + E + N+ ++ + + Sbjct: 253 TDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGLEFGIALDQVAAALSG 312 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R + F + D++YNA+P SM AA++VL+ S GRRIAVLGDM E+G Sbjct: 313 VEPESGRQALKRSSRGFLVFDDAYNASPESMAAALNVLASFSAS--GRRIAVLGDMGELG 370 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQ 438 HI+ + + I + G + DA + V D + Sbjct: 371 SAEVEGHINTGKAAAQAGIDMLVCVGAMSRYIADAARKGGMAVKSVIEVADADAAATTVL 430 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINL 463 GDVV+VK+S+ G R++ Sbjct: 431 DIAQPGDVVLVKASHFMGLDRVVER 455 >gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter arilaitensis Re117] gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter arilaitensis Re117] Length = 485 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 201/470 (42%), Gaps = 15/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + DLL+ G + + ++ DSR + P + A G DGH FI Sbjct: 1 MIEL-SLTDLLEITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITG 115 A GA L + + P V+D + A+ K+A + ++ A ++ ITG Sbjct: 60 ARAAGAVLSLAER-ITHDEERREHPAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVVGITG 118 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKTTTK++L LS T + IGSYN +GVPLT+ + + + E+G + +G + Sbjct: 119 SAGKTTTKDLLAGILSQAAPTVSPIGSYNGEVGVPLTVFSATEETKYFVIEMGATGIGHL 178 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT +V PH+ V+ + AH F G+E I AK E+ E L+ G LN +D + Sbjct: 179 NYLTDMVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEALDTEGIAILNAEDPRVARM 238 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++++ + K +NA +E Sbjct: 239 ESRARSQVRFFGTGAVKPENAGVWASDVVVNAEGQPELTLEFPNGYSKRITSGLLGRHHV 298 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + + L D+D + A + G R ++I+++YNANP SM+A Sbjct: 299 SNILAAANAALALDIDPELIAAGLEGRAAGSRWRMERLERADGVSIINDAYNANPESMRA 358 Query: 356 AISVLSQISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 A+ L+++ +G R AVLG+M E+G+ S H L + NI + + G Sbjct: 359 ALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLGRMAVRMNIKKLVVVGRGA 418 Query: 412 LALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 ++ +Y E ++ ++ L GD+ + KSSN G Sbjct: 419 KPAYNSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGDIALFKSSNGAGL 468 >gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 455 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 201/475 (42%), Gaps = 24/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M ++ + + +G ++ DSR I P + F A++G +DGHDF+ Sbjct: 1 MATFFSPFQIQLGLGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVA 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA +V+ D + + VD+ L A ++A R R +I ITGSVG Sbjct: 61 QALADGAIAAIVDRDYQPPSDLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRF 177 KTTTKE++ L+ +YNN IGVP T+ ++ D + + E+GM G+I Sbjct: 121 KTTTKELIAAMLAVRGPVLKTEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAE 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P+IAVIT + AH+ + IA AK E+ L TG LN D+ L A Sbjct: 181 LARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIA 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + L + ++G Q L + G H A N L Sbjct: 238 TAQRLNLPRCRTYGLQNGD---------LQGQLIDLETLVVEGQRFRLPLPGAHNALNFL 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L I L D + R R L+DE+YNA SM + Sbjct: 289 AGLAIAQELGLDWEAFR-----DLSVTLPQGRARRIELSPDIVLLDETYNAGLESM---L 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416 + L ++ RRIAVLG M E+G+ S+++H + E + + + + A Sbjct: 341 AALQLLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYADPTEAAAMQ 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 A +I + L ++ S+ GD ++ K+S S R++ + + A+ Sbjct: 401 AGASAIATQIFTNAEDLLSELRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455 >gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisA53] gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisA53] Length = 480 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 193/467 (41%), Positives = 260/467 (55%), Gaps = 3/467 (0%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LWT + A++ G G+SIDSR++ P +A+FAIKG +DGH F+ A++ Sbjct: 6 LWTLDAMASAMRAERSGAPSDVVF-GLSIDSRTLTPGDAYFAIKGEAHDGHAFVAAALEA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + VV + + + VDDVL AL LA AAR R + +IA+TGSVGKT+TK Sbjct: 65 GAAVAVVAREQRDQFAA-DARLLIVDDVLEALRDLARAARARLEGQVIAVTGSVGKTSTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L ++ +T+A + S+NNH GVPL+LAR P F +FE+GM+H GEI L LVR Sbjct: 124 EALRAVFAAQGETHASVASFNNHWGVPLSLARCPASARFAVFEIGMNHAGEIEPLVGLVR 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+ITT+ P HL F GIE IA AKAEIF GLE G + LN D++ F L + A G Sbjct: 184 PHVAIITTVEPVHLEFFDGIEAIADAKAEIFAGLESGGAVVLNRDNAQFTRLAECAEARG 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 IK I SFG AD +L + S + ++ G+++ G H A N L L Sbjct: 244 IKRIVSFGADGRADAKLIDIALQPDCSAIRAEIGGQTVTYKLGMPGRHQAINSLAVLAAA 303 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ A LS P GRG R R + G TLIDESYNANPASM AA++VL Sbjct: 304 ELAGADLALAALTLSQVVPAAGRGVRKRLEISHSGEATLIDESYNANPASMAAALNVLGG 363 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +P +GRRIAVLGDM E+G S H L + I V+ G + L DAL Sbjct: 364 AAPGPQGRRIAVLGDMLELGPRSAELHAGLNAAVKANAIDTVFCCGPMMRHLWDALSTGK 423 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y+E L + ++ GDV++VK S +++ L + +P Sbjct: 424 RGGYAENSAALESHVVGAVRAGDVIMVKGSLGSRMKTIVSALEKRYP 470 >gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter hydrossis DSM 1100] gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter hydrossis DSM 1100] Length = 434 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 121/433 (27%), Positives = 198/433 (45%), Gaps = 16/433 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR I P FFA++G +++G+ + A+++GA VV+ +A+ VD Sbjct: 16 VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQD----RCIVVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L LA R + IIAITGS GKTTTKE++ L S + G+ NNHIGV Sbjct: 72 DVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL ++ ++ + E+G +H GEI L + P +IT I AHL F GIE + Sbjct: 132 PLTLLQLDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNIGKAHLEGFGGIEGVKKG 191 Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ L +T F+N D+ F L + + +++ + Sbjct: 192 KSELYRYLAETDGLAFVNNDEPFLVELSSGVRKRIFYERSDDPAPNHKPYEVVLLQLQPF 251 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + +E +G H QN+ + + A+ ++P R + Sbjct: 252 IRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGKKIKAAIENYNPNMNRSQ 311 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 N +++ ++YNANP+SM+ + S +RIA+LGDM E+GE S Sbjct: 312 WVSWGTN----SILLDAYNANPSSMEVTLRS---FSESPASQRIAILGDMFELGESSAVE 364 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H +A++ N V L G H A+ L + + L + ++ + + Sbjct: 365 HERVAQLAQSLNFEQVILVGQHFAAIARQLGW----LHFPNVGALKPWFEARQWENTAFL 420 Query: 449 VKSSNSCGFYRLI 461 +K S +L+ Sbjct: 421 IKGSRGMALEKLL 433 >gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] Length = 464 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 202/475 (42%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L Q ++G +G + IS D+R + FF +KG +D HD++ A Sbjct: 1 MIKQTT-QQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +++G +VV ++ ++++P V+D AL +LA + +A+TGS GKT Sbjct: 59 IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + N +GVPLTL R+ + F + ELG +H+GEI Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFTVVELGANHIGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P ++ +A AHL F + +A AK EI+ GL+ G +N + E K Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK 233 Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 Y+ K DF + S + +E+ +G H N Sbjct: 234 EIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + AD+ L +GR N ID+SYNAN SMK+ Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+SVL Q RI V GDM E+G+ S + H ++A+ + + V G + Sbjct: 351 AVSVLKQYPA----FRIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464 H+ + F+ + + +V++ K S S +I L Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASL 456 >gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] Length = 456 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 197/465 (42%), Gaps = 20/465 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + D + + V+G++IDSR + P + F AI G DGHD++ Sbjct: 1 MIAPLSVTDFAARCGAELHCEIDKLLEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEA 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+++GAG +V + S ++P V D AL R ++ ITGS GK Sbjct: 61 ALERGAGAALVQQQV-----SSALPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT K ML LS A G+ NN +GVPLTLA + D ++ + ELG G+I L Sbjct: 116 TTAKNMLAEILSRAGSVVATKGNQNNELGVPLTLADLNNDTEYAVLELGAGKPGDIARLC 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP+IA++ +APAHL+NF ++ I+ K + + L G +N DD Sbjct: 176 EMARPNIAILLNVAPAHLANFGSLDAISKTKGALLDDLPADGLAVINADDPRVFDW---H 232 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 +FG + AD+Q + S +Q + +EV + G N L Sbjct: 233 VRASPTRCLTFGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L T + L+ P GRG A+ +LID++YNANP +++AAI Sbjct: 293 AAAVADALGISAITIREGLAAVKPAPGRGG---VAVLSPDASLIDDTYNANPVAVRAAID 349 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ GRR VLG M E+G + H +L + +W G A Sbjct: 350 VLA----SEPGRRRLVLGAMLELGLDEEKLHAELGVYAREAGLDELWAVGSEAAPAAVAF 405 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 L + + +VK+S +N Sbjct: 406 GEG--ALCFTDTSELITYAPTLWGANTT-LVKASRGAQLEVAVNH 447 >gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] Length = 974 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 132/458 (28%), Positives = 208/458 (45%), Gaps = 20/458 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + + G G G+S D+R++ + FFA+ G +D HDF+ A GA Sbjct: 520 TLASLAERLGGELRG--EDLPFAGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGA 577 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV+ + +P V+D AL A R R ++A+TGS GKT+ KEM Sbjct: 578 CGAVVSR-----WVDVDLPQIKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEM 632 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L S + A G+ NN IGVPLTL R+ F + ELG +H+GEI + LVRP Sbjct: 633 LAAIFSEEGRVLATSGNLNNDIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGLVRPD 692 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT + AHL F IA AK+EI+ GL G +N DD + + + + + Sbjct: 693 AALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNASRNVL 752 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T N + + +EV + G+ +++ + IG H N L Sbjct: 753 TFSIENTRANCFAKSWSLDP-VGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAAARA 811 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A + + L+ P +GR + G + ID++YNANP+SM+AAI L+++ Sbjct: 812 AGASLTSIRDGLNKLQPFKGRMFP----KSLGRWHWIDDTYNANPSSMRAAIDALARLDE 867 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 ++ +LG M E+GE S H D+ + I +++S Sbjct: 868 ----PKVLILGRMGELGEQSAKLHADIGAYAARAGIRRLFISRDDAGDYARGYRSVTNDG 923 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + + + + S+ +G VV+VK S S ++ Sbjct: 924 QLFVGDGPEAIAKQLIESMPEG-VVLVKGSRSAAMEKV 960 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 88/476 (18%), Positives = 162/476 (34%), Gaps = 46/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL A++ V+G+ DSR + + F A+KG H DG D+I A+++GA Sbjct: 10 LGDLL-AVEAEF----ADVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGAS 64 Query: 67 LVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 V+ + V++ ++ V DD+ L +A +IA+TG+ GKTT Sbjct: 65 AVLADRVGVSAEQVVNAHGNVIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTV 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 +L L + ++ IG+ G P L + I Sbjct: 125 SHLLVRLLMRLGESAKTIGTLG--YGHPDHLIPLANTTPDAIQLHEILAACREDGARFVA 182 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + V AV T I HL ++ AKA++ + LN Sbjct: 183 MEASSHGLDQGRLGCVEISTAVFTNITRDHLDYHQTMQAYWEAKAKLA-SWHGLRNLVLN 241 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD+ + A + +S N D L + ++++++ + Sbjct: 242 ADDAGVAKMAAVAEHGVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTR 301 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L L + + AL P +GR ++ + Y Sbjct: 302 LMGEFNVANILAVLAALVSEGFSASLVVDALKEIAPVKGRMDCLPHTSGAQLPAVVID-Y 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P +++ A++ L G+ V G G L ++ + V + Sbjct: 361 AHTPDALQQALNALRHH--CTTGKLWCVFG----CGGDRDKGKRPLMGKIAASSADRVVV 414 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + + V DV+++ K Sbjct: 415 TSDNPRSEVPDVIIAEIRGGMEATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKG 470 >gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] Length = 462 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 133/474 (28%), Positives = 207/474 (43%), Gaps = 21/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + ++ + SIG+ +N IS +S I + F A+ G YDGHDFI A Sbjct: 1 MI-LLSVSEISLILNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA V+VN S+++P V D AL K+A R R + +IAITGS GKT Sbjct: 60 VMAGAQAVLVNR-----YVSVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + K M L + + G+ NN IGVP+TL + DF + ELG + LGE+ L+ Sbjct: 115 SVKNMTVSILKNCGTVVSTQGNQNNLIGVPITLLNLTYQSDFAVIELGSNQLGELNKLSK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V +A++ I +HLS F ++ I K EIF GL G + +N D + + Sbjct: 175 IVAADVALVNNIFISHLSGFRSLKSIQQEKGEIFSGLACNGQVVINGDSNAV-FMWNSML 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + +S K DF + V +G H N L Sbjct: 234 QLKKRWWFSIYVKKEMDFFANNICIYPHGVRFILSSPYGVAPVFLSILGRHSVSNALAAS 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A++ + L P GR + +YN+N SM AI+VL Sbjct: 294 ALAFSVGANLSEIVYGLQNIQPLPGRLYPILLNDGKLLLLDD--TYNSNVGSMIEAINVL 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S + G RI V+ DM E+GE + +H +A ++S I + G + Sbjct: 352 SVMP----GYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILTIGNISYLISKNC 407 Query: 419 PRSIHVHYSETMDGLFLFIQSS-LVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 H H + L ++ ++ L ++VK S S R+++++ ++F Sbjct: 408 KEGKHFH---NKNKLIRYLLNNILFQNTYISILVKGSRSFQMERIVDIIRDQFE 458 >gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] Length = 449 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 137/471 (29%), Positives = 210/471 (44%), Gaps = 28/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN + ++ + Q ++ I DSR + F + G DGH+F A Sbjct: 1 MN--LSIKEVAALFG---VECADQTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA + + + + V D L A KLA + + +IAITGS GKT Sbjct: 55 QEKGAIAAFWSHPTI--QPPEGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ ++ KTY G++NN IG+PLT+ P D + + E+GM H GEI L+H Sbjct: 113 TTKDMVDAVVAQQFKTYKTQGNHNNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSH 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P +A IT I AH+ N E IA AK EI GL+ G + D+ L Sbjct: 173 LAQPDVAAITLIGEAHIENLGSREGIAKAKMEITAGLDPAGFFMIPADEP----LLTPYL 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + +FG + E++ + IG + +N L+ + Sbjct: 229 AELTQQVETFGL-----GEGNLKGTIQEETQEQTAFTVADQVYTIPVIGGYNVKNALIAI 283 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GI L + + L+ F + R + + A ++ + YNANP +M + Sbjct: 284 GIGRYLGIEEEKIKAGLADFQLTKNRTQWLKAANGAA---ILSDVYNANPTAMGLVLDSF 340 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ GRRIAVL DM E+G S H +A+ L ++L G + ALK AL + Sbjct: 341 RKLPL--TGRRIAVLADMLELGPDSAKMHAGMADHLDER-FDLIFLYGSEMQALKRALDQ 397 Query: 421 ---SIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + VH+ E L +Q L D +V+K SN G +I+ L Sbjct: 398 SRLADRVHFFSKEEKAALITQLQKELQPTDSIVLKGSNGMGLVEVIDSLTA 448 >gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] Length = 453 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAIALLVQRELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKNVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 483 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 137/484 (28%), Positives = 205/484 (42%), Gaps = 26/484 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ + ++ +A+ G IG + DSR P F AI+G H DGHDF+ Sbjct: 1 MVPM-SVEEIAKAVDGRLIGDADSESRSTNTVSDSRQAGPGSVFVAIRGEHVDGHDFVAK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAIT 114 +GA + +V+ ++ S +P V D + AL +LA R R II +T Sbjct: 60 TAGQGATVAIVDHEV----ESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GE Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I LT + P+ A++ + AHL F E IA AK+EI +GL GT LN DD Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + + + + + + V G V G H Sbjct: 236 MAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353 N L + +T + L+ H + FTLID+S+NANP SM Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 355 Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 KA ++ L + + V LG M E+G + H + + I + G Sbjct: 356 KAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAVGSAQ 415 Query: 409 -FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYR 459 H+ AL AL V +D + VV++K S++ G Sbjct: 416 DQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSA 475 Query: 460 LINL 463 L Sbjct: 476 LAER 479 >gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] Length = 460 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 119/469 (25%), Positives = 199/469 (42%), Gaps = 14/469 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ A V I DSR++ P + F + G +DGH+F+ A KG Sbjct: 3 LTLHEIANATGAVGDFDPQTPPVCRIQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ + S IPV V D L AL +LA R T++A+TGS GKT+TKE Sbjct: 63 ASAIIAQQPLFD--LSAGIPVLLVQDTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKE 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + L + ++NN +GVPL + + +F + E G+S GE+ L ++ P Sbjct: 121 CIAGVLGRRGQAAKSYKNWNNRLGVPLNILSFSGEEEFWVLEAGISEPGEMAALASIIAP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T +AP HL + + K + + L GT+ L+ D A + Sbjct: 181 DVAVVTNVAPVHLEGLVDVPTVVEEKLHLCDHLTHNGTLVLSVDYPELSQRAASAVCPKT 240 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 K+ ++ + ++ G E +MA+N+ + Sbjct: 241 YFSVQAEKAPYWCEPIQDPEVY---GRFQLSCDGVRTEFDLPWAADYMAENLAAAACVGH 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +V+ + L E RG L +ID++YNANP SM+ AI ++ + Sbjct: 298 RLGLEVEEIVAGLQTAELPEHRG----QLLTLPGGIVIDDAYNANPHSMQRAIRAAARRA 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421 + VLG+M E+G +++ H L V+ + V+ G H A+ + Sbjct: 354 GERP--LVLVLGEMAELGPDAEAAHTQLGRVVGAVAPTAVYYQGEHADAVDCGAREVDPD 411 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + + + L + +V+VK S S + I +L +EF A Sbjct: 412 LRIQRVRSPQDLENAWGAFAKRSPLVLVKGSRSGRMEQYIQVLQKEFGA 460 >gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 468 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 139/466 (29%), Positives = 205/466 (43%), Gaps = 6/466 (1%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P +T +L A G +G P V+G+S D+R++A + F A+KG +D HD + A Sbjct: 7 TPHFTSDELAAATGGRWLGAPP-AAVDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +VV+ A+ + P V D L AL +A R R +I +TGS GKTT Sbjct: 66 AAGAAALVVSGAWAAAHPAPPRPALAVADTLAALGAIARFHRCRFGIPVIGVTGSNGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+EM+ L++ G+ NN +GVPLTL + + E+GM+H GEI L + Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHPGEIARLAAI 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + V+T APAHL +E +A AKAE++EGL G +N DD + + A Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADD---ARMLKRGVA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + + + L + EV H G A N Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 A T + G+R R L+D+ YNANPASM AA+ VL Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSAALEVLR 362 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419 ++ R +AVLGDM E+G H L + ++ + G A Sbjct: 363 DLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAATAGVAVLAAFGPRARATAEAARAA 422 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++E +D L F++ L DV++VK S RL+ L Sbjct: 423 GLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468 >gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 454 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 203/467 (43%), Gaps = 30/467 (6%) Query: 10 LLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + + + S+ + +N I DSR+I + F ++G DGHDFI A + GA Sbjct: 1 MARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT 59 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + P V++ L A KLA + + +IA+TGS GKT+TK+M+ Sbjct: 60 FSERAIS------GRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEA 113 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L+ KTY G+YNN IG+P T+ MP D + + E+G H+G+I+ L+ + RPHIAV Sbjct: 114 VLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARPHIAV 173 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I AHL+ F E+IA K +I +G++ G + D L + Sbjct: 174 LTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQMVIR----- 228 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +L + + + V G + A N ++ + +L Sbjct: 229 -----FGDHQELVVEDIKERKDSLTFKTNVLPRPVTIPLTGKYNATNAMIAAYVGRLLAV 283 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + I+AL + R L+ + YNANP +M+ + + I + Sbjct: 284 PDEDIIEAL---EAVKLTRHRTEWIKAANGADLLADVYNANPTAMRLILETFAAIPANLN 340 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVH 425 G++IAVL DM E+G S + H L L I + G + AL + S V Sbjct: 341 GKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQALAKLASQDYPSGRVS 400 Query: 426 YS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + ++ + L D +++K S+S +++ L Sbjct: 401 FFKKNNQEDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRLTA 447 >gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] Length = 468 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 118/470 (25%), Positives = 203/470 (43%), Gaps = 22/470 (4%) Query: 7 FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + +G V + IDSR + P + F + G DGH F AV+KGA Sbjct: 5 LSRIATVLNA--VGEQTDGRTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ + G PV V D AL LAVA R ++ ++A+TGS GKTT KE+ Sbjct: 63 VAVLAQRPLPEVDG---APVLLVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVKEL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ + NN IG+PL++ + D + E+G+S G++ L + P Sbjct: 120 IAQTLAAEMSVAKNHKNLNNQIGLPLSMLAASGEEDVWVMEVGISRQGDMEELAPIASPD 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVI I PAHL + +A AKA + + + G +N D + Sbjct: 180 LAVIHNIGPAHLEGLGSLRGVAEAKAHLLTSVRRGGAAIVNRDYPELWEAAQRIFPSVRA 239 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +++ A + + ++L+ + +EV +G H A+N++ + Sbjct: 240 M---STQNEKAPYFCTYLGPSQQGGVFLLRLEDERLEVDLPFLGAHFAENVVAAASAAYL 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + ++AL+ + R + + GF TLID++YNANP SM AI ++++ Sbjct: 297 LGMSAGSIVQALAKAQLPDQRFAAH----HLGFGTLIDDTYNANPLSMSRAIQAATELAG 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 + + VLGDM E+G +++ H+ L E + + V G A+ L ++ Sbjct: 353 NRP--LVLVLGDMLELGSEAEAEHVRLGERAAASGCAAVVYRGGFAKAVARGLAQAGFKG 410 Query: 426 YSETMDGLFLF--IQSSL-----VDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + L G V++ K S S + L + Sbjct: 411 RFQEVRAGAELPPVLEDLGLTKEQAGTVILAKGSRSSRMEEFVTALRSSY 460 >gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] Length = 453 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLSSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR A + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDM---APLRDDITLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc argentinum KCTC 3773] Length = 441 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 207/468 (44%), Gaps = 35/468 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + + G G V G+S +SR + P + F A+ + DGH +I A+Q+G Sbjct: 3 YSIAKIGDILNADIQG---SGQVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V+ +P V D L AL +L R ++AITGS GKTTTK+ Sbjct: 59 AAAVLVDDQHD---IPNDVPAVIVPDTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKD 115 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M ++ KT+ ++NN IGVP+TL MP D + + ELGM G++ L+ LV P Sbjct: 116 MTAAVMAKRYKTFKTPENFNNEIGVPMTLLTMPADTEVLVVELGMDRPGQLTALSKLVVP 175 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+IT I AH+ F +IA AK EI GL+ G + F E L ++ Sbjct: 176 DVAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLC----IPFDEPLLTQADVAQQ 231 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ G S E I N++ L VS Sbjct: 232 VVVFGDGVSAVQGDATTTTFTYQE---------------TRFAIPLIGGYNIMNALAAVS 276 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A+ + R + LI + YN+NP ++ A ++ L I Sbjct: 277 AGILLHIDLDDAVEALQTFDLTKNRTERLVTARGVNLISDVYNSNPTAVAAVLATLKAIP 336 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKDALPR 420 + VLGDM E+GE + + H +LA+ + N++ V+L G A + Sbjct: 337 AP---HKYVVLGDMLELGEQAATLHANLAKEILAANVTGVYLVGQLFTANTAPILAPHFD 393 Query: 421 SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S H+H +T +D L +++ GDV+++K+S+ ++N L++ Sbjct: 394 SEHLHLYDTHQLDALIADLKTLGDAGDVILLKASHGIHLENVVNALVQ 441 >gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] Length = 454 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 205/469 (43%), Gaps = 25/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + Q + V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQTLG--LPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL KLA A R + ITGS GKT Sbjct: 58 LAAGATAVVVSREDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAGVLRHRFGDEAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSL 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + P++A++ AH+ F G+ +IA AK+EI+EGL G + +D+ + Sbjct: 174 LTRIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLSDGVALIPCEDANIATFE 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + L I+T D + ++ + + VV G H N Sbjct: 234 AATVQLNIQTFGIAS----GDVHAENIELKPLSCTFDLVRGNERVAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + + L F +GR + TLID++YNANP SMKAA Sbjct: 290 VAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+ + RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLAAMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + D L + L + V+VK S ++ L Sbjct: 403 ETF--GAEGLWFADKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEAL 449 >gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] Length = 469 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 124/462 (26%), Positives = 201/462 (43%), Gaps = 10/462 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L A + + + +S D+RS+ P F A+ GP++D + ++ AV GA Sbjct: 12 LEQTLSATRVDAQDGTLPEVFHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGAS 71 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + S+ IP++ V D L A+ +LA A R A I ITGS GKTT KEML Sbjct: 72 GILCSRPPAQSLP---IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEML 128 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + +SS +T G+ NNHIG+PLTL P D + E+GMS GEI L L +P I Sbjct: 129 GLIVSSRYRTGITRGNLNNHIGLPLTLLNCPSDRTHLVLEMGMSAPGEIAHLAELAQPQI 188 Query: 187 AVITTIAPAHLSNF--SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++T I AH++ F + A L + + A +L Sbjct: 189 GIVTNILAAHVAGFGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTG 248 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I SFG + + + + + + G+ + + Sbjct: 249 CAILSFGPQSSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVAACAA 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 +D A + + R Q +++++YNAN +M+ A+ LS ++ Sbjct: 309 AYGLGLDAAAM-QEGLSRFKLQKGRGSVEHGQVGCRILNDTYNANVGAMRVALEALSHMA 367 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSI 422 P + IAVLGDM E+GE + + H +LA+ + I ++L+G H+ AL AL + Sbjct: 368 PAPQR--IAVLGDMLELGEAADTLHAELAQTILALGIQRIFLAGPHMAALYQALQSSPGL 425 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L + + GD V+VK S R++ L Sbjct: 426 QLFHYADPVALAKDLSHYVGHGDAVLVKGSRGMRMERVVEAL 467 >gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma proteobacterium HTCC2143] gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma proteobacterium HTCC2143] Length = 452 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 141/466 (30%), Positives = 217/466 (46%), Gaps = 20/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M D+ + G G + + + D+RS++P + F A+ G HYDG+ F+ A Sbjct: 1 MISALLLSDIARETGGQLFG---EASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA + + + A+ IP VDD AL ++A R R ++A+TGS GKT Sbjct: 58 VIAGAVAAITSEAVTAA-----IPSVKVDDTRFALGQIARLNRRRFSGPVVALTGSAGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ L + A ++NN IGVPLTL + F + E+G SH+G+I +LT Sbjct: 113 TTKEMVARILCERGEVLATEANFNNEIGVPLTLLAIDPSHQFAVVEMGASHIGDIAYLTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 P IAV+T H+ F IE +A K EIFE L + G +N D+ FF+ ++ Sbjct: 173 FAEPTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFENLPEGGVAIINQDEPFFQQWLQQAG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + S N + Q + + E+ L +++ + +G H N + Sbjct: 233 KASVVTFSKYDTSANY-YASNIHIQTNASTVFELHLAQQTITIKLALLGEHNVLNAVAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 A VD K L P +GR A T+ID++YNA+P S+ AAI VL Sbjct: 292 AAAMTAGATVDDVKKGLESVRPVDGRL----KASADSNRTVIDDTYNASPGSVMAAIDVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S S GRR +LG M E+G L++ H D+A I + + G + ++ Sbjct: 348 SGFS----GRRCLILGTMAELGGLAEKSHRDVASYARHKGIEELLVVGEFASLVSESFGA 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + L + SL V++VK S S R++ L Sbjct: 404 AC--LPFDDVQQLLDVLDESLHS-SVILVKGSRSAHMERVVEALKN 446 >gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 470 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 189/467 (40%), Positives = 263/467 (56%), Gaps = 5/467 (1%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN PLWT + A+ G G P G+SIDSR++ P + F A++GP++DGHD + Sbjct: 1 MNRPLWTSAEAAAAVAGTPSG--PAWEARGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ GA +V+ + P+ V D + AL L VA+R RS A I+A+TGSVGK Sbjct: 59 ALAGGAAGALVHK--LPKGVQDDAPLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T +KEML +ALS T+ +GS+NNH GVPL+LARMP + IFE+GM+H GEI L Sbjct: 117 TGSKEMLALALSDQGVTHYSLGSFNNHWGVPLSLARMPAGSRYAIFEIGMNHPGEITPLV 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +VRPH+AVITT+ H+ F+ EIA+AKAEIF+G+E G L D++ F L + Sbjct: 177 RMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPRDNAHFAFLAEAA 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 GI I SFG + +L + + + L + + G A N L Sbjct: 237 AKAGITHIRSFGNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGVAGRQWATNSLAV 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V L ADV+ A AL+ +GRG+R R ++ G F LIDESYNA+P SMKAAI+ Sbjct: 297 LLAVEALGADVNLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYNASPVSMKAAIAA 356 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ + P GRRIAVLGDM E+G H +AE + +NI V+ +G L DAL Sbjct: 357 LASVKPAKGGRRIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTAGILTAHLHDALA 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ D + +++++ GDVV+VK S R++N L E Sbjct: 417 EQRRGGHAADSDAVSALVKAAVRPGDVVMVKGSAGSRMGRVVNALAE 463 >gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] Length = 468 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 195/477 (40%), Gaps = 30/477 (6%) Query: 1 MNPL-WTFHDLLQAIQ----GHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDG 53 M L W F + A+ VP+ V I DSR + + F + G +D Sbjct: 1 MLELNWAFEHIATALSKLLIAQVNQGVPELPSAVRLIQTDSRLVEKGDLFVCLIGERFDA 60 Query: 54 HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 HDF ++ GA +V N + L I F V+D AL LA A R + ++A+ Sbjct: 61 HDFAGQVMKSGAAALVTNR-----VLDLPIHQFVVNDTRLALGALASAWRQQFDLKVLAV 115 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 GS GKTT+KEML + G+ NN IGVP TL ++ + E+GM+ Sbjct: 116 VGSNGKTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVPQTLLKLRPQHQMAVIEMGMN 175 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 H GEI +L LV+P + ++T H + +A+ F L G D Sbjct: 176 HPGEIDYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTHLSSNGCAVFPVSDE 235 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F +A S S ADF++ + QS + ++ +E+ + IG Sbjct: 236 FDACWQALSTGKSTLRFGS-----GADFEILPPRSDFGQSAVVLRALDAPIELRPNFIGE 290 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N + L+ F P GR + ALN LI++SYNANP Sbjct: 291 HNYANAAGAAAAAHAAGCTHEAIQAGLNAFQPVNGR---LQVALNTPSILLINDSYNANP 347 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 S+ AA VL G + VLGDM E+G S +H ++ + H++ G Sbjct: 348 DSVNAASKVL----GQQAGSTLLVLGDMGEVGNQSDEYHAEVGSYAKQAGVKHLYALGDA 403 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLLE 466 A + +T++ L ++ G V+VK S R++ L++ Sbjct: 404 TTHTVLAFGEG--AMHFKTIETLIENTMNTTKQGRWSVLVKGSRFMKMERVVQALVQ 458 >gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 118/476 (24%), Positives = 188/476 (39%), Gaps = 20/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G + I P + G + IDSR + F A G H DGHD+ Sbjct: 1 MIAL-SLAEIAEIVGGQAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V V + + +P VDDV AL LA A R ++A+TGS G Sbjct: 60 -------RAVAAGAVAVLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT R + + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLDRHAPTVWTPGSLNNEIGLPLTALRASDETRHLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L + + L Sbjct: 173 TGLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPAAEDG-GVAVLNADDPLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG++ A + + V + Sbjct: 232 MASRTKARVTLFGEADEAAVRAENVRLTENGQPSFRLHTPTGCSDVTLRLY-GEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 291 LAAAAVAHELGMPVEEIATALSEAGTLSRWRMEVTERPDGVTIVNDAYNANPESMRAALR 350 Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413 L+ + + R AVLG M E+G+ S H + + N+S + G + Sbjct: 351 ALAAMGRAAQARGARTWAVLGKMAELGDASLVEHDAVGRLAVRLNVSKLVAVGDREASWL 410 Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G ++ LL+ Sbjct: 411 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEQVALALLD 466 >gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] Length = 453 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR A + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDM---APLRDDITLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] Length = 456 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 205/465 (44%), Gaps = 18/465 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M TF +L QA+ + +G+SIDSR+I P + F A+ GP +DGHD++ Sbjct: 1 MLKAMTFSELSQALSARVL--SSDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA +V ++ S +P V D AL +L R + A+TGS GKT Sbjct: 59 AAKGAVGALVQCEVPEST----LPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE+L L + A G+ NN G PLTL + + + ELG S +GEI + Sbjct: 115 TVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVA 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +PH+A+I AH+ F G E+I AK EI EGL+ +GT LN DD FE +A++ Sbjct: 175 LTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRARAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + + + V + +G H N L Sbjct: 235 GRKVLTFAVLNAAADFHASDITVDA-RGCPSFTLHTPQGREPVQLNLLGNHNVANALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + L P +GR L +ID++YNANP+S+ AA+ +L Sbjct: 294 AAAHALGVSLFGIATGLGAVQPVKGRTVAQ---LATNGMRVIDDTYNANPSSINAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +GR++ VLGD+ E+GE ++ H ++ + + ++ G ++ +A Sbjct: 351 KGF----DGRKVLVLGDIGELGEWAEQGHREVGAYAA-GKVDALYAVGPNMAYAVNAFGP 405 Query: 421 SIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + T L + + +++K S S ++ L Sbjct: 406 G--AQHFATQVELIQALTAAEHDKHTTILIKGSRSAVMENVVVAL 448 >gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Vibrio cholerae LMA3894-4] Length = 453 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] Length = 452 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 205/470 (43%), Gaps = 24/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + +++ QG G+ ++ +S DSR+I Q F A+ G +D H F+ A Sbjct: 1 MI-LMSLNEVANICQGRLNGV--NTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA ++V+ ++ S+P V D A L + + IA+TGS GKT Sbjct: 58 EEQGAVALLVSHEV-----DSSLPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML L + A G++NN IGVPLTL R DF + ELG +H EI + T Sbjct: 113 TVKEMLASILKRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFSVIELGANHQNEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRP +A++ IA AHL F IE +A AK EIFEGL++ T N D + Sbjct: 173 LVRPDVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENATAIYNLDSNGLPRWSD-LF 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S ++ S + S+ V IG H N + Sbjct: 232 ENKTVLSFSQENNQADFHASNIEINGLGASSFTLNTPVGSIVVSLTIIGKHNVSNAVAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + L +GR +ID++YNA+ +MKAA+ +L Sbjct: 292 ALAVQANCTLADIQQGLQSLENVKGRVAVEVLPSGLK---VIDDTYNASVPAMKAAVDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 G R VLG+M E+G+ S + H ++ E + Y V G + + Sbjct: 349 GGF----NGSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQVITFGDDTKVISEL--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466 + + E+ + L ++ L + V+VK +NS ++ L E Sbjct: 402 -CNGRHFESRNELNAYLLQELQLIKHNEVTVLVKGANSSRMSEVVLALKE 450 >gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] Length = 474 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 198/472 (41%), Gaps = 27/472 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + + P + G+S D+R++ P F A+KG +DGHD + A GA Sbjct: 5 SLQQVATWLN-QLSVQQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V+ + +P V+D L AL L R + +IAITGS GKTT K++ Sbjct: 64 AAAIVSH----LNPDIDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L + T A +G+ NN IGVPLTL + F + E+G +HLGEI LT L RP Sbjct: 120 LASICAQAGPTLATLGNLNNDIGVPLTLLSLSDIDQFAVIEMGANHLGEIARLTALARPD 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + +IT AH+ F ++ I K E+F GL +N D + + Sbjct: 180 VGLITMAGTAHVGEFGSVDAIVQGKGELFVGLVPEAQAVINLDSYGADRW---WAMGSAQ 236 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + ++ +E+ + Q G H A N+L + + Sbjct: 237 RNGFTLNNDPRARWTGEYNATTERLTIFENGQLLIESQPLPLPGAHNATNLLAAVAVART 296 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L+ F P GR T+I+++YNANP SM AA+ L Sbjct: 297 AGFSKEIILAGLNSFTPPAGRMS---LVACSEQLTVINDTYNANPESMCAALDYL----V 349 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIH 423 G +AVLGDM E+G+LS + H ++ I ++ G + A+ ++ Sbjct: 350 GRPGLHLAVLGDMGELGDLSAALHEEVIAYARGLAIDGLFTLGAAMDVAMKPNAVSSNVS 409 Query: 424 VHY-SETMDG-------LFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLL 465 + Y ++ + S G +++K S R++N LL Sbjct: 410 IEYSAKDHADLALALVRALDQLASRSASGTPITILLKGSRFMRMERILNQLL 461 >gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] Length = 450 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 124/468 (26%), Positives = 204/468 (43%), Gaps = 21/468 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T + + G I P N DSR + + F+A+KG +DG+ F+ +A Sbjct: 1 MYLNLTLGSFAKIVDGRIIQGNPLMPFNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA +V + I + + V++ L AL LA R RS ++AITGS GK+ Sbjct: 61 VDAGASALVADKFFADKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKS 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+ML + A +G+ NN G+P +L + FG+FELG S G+I + Sbjct: 121 TTKQMLLSICKTSGPARANMGNLNNQFGLPFSLLEIDSKDKFGVFELGASKKGDILEIGK 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 P +A+IT ++ AHL F ++ + K E+ + L G + N DD+ + LK + Sbjct: 181 PTLPDVAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFGGILVFNSDDAMLKKLKTEYK 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I SFG AD Q++ K + ++ + Sbjct: 241 GKAI----SFGFKSGADLQIKNKKNL-----------EFVYKGEVFSFDLQFEKHNKLNA 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + G I + YNANPASM + + Sbjct: 286 AAAAAGAIALGLYKDNIEKGLAAYEAMPMRMEERKIGNVDFILDCYNANPASM---KNAI 342 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 + ++ G R+AVLGDM E+G S +H LA++L I +++LSG + A +AL Sbjct: 343 TLLAKRKAGPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFLSGPEMAAAAEALKT 402 Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + YS ++ L +G ++K+S S + ++++ L Sbjct: 403 KNPAAKLKYSLEYKDWAQDLKEVLKNGGTCLIKASRSMNYEKILDCLK 450 >gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 455 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 119/462 (25%), Positives = 201/462 (43%), Gaps = 16/462 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TFH++ Q + F + +DSR + + F A+ G DGH F+ +KG Sbjct: 6 LTFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKG 65 Query: 65 AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +V+ D + + +P+ GVDDVL AL KLA + + I+AITGSVGKTTTK Sbjct: 66 AAAAIVSNDFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTTTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLV 182 +L L G+ N+ IG+PL++ + I E+GM+ G I+ L + Sbjct: 126 HLLFQLLQKHFSVAFSPGNQNSQIGLPLSILNHYHGHEDVLILEMGMTAQGHIQKLIEIA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IA++T + H++ +E IA AK EI + + A H Sbjct: 186 PPDIAIVTALELVHVAGVHSLENIAHAKREILTHPK-----TMLGLIPSEIPFYALLHET 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G SF ++ + + + +G H N L + Sbjct: 241 GTCRKQSFSTLSIQADYC--LREQDQHLQIRDSQGLSPLLPRLPFLGKHNQHNFLAAISA 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + E R ++ I++SYNA S+KAA+ L Sbjct: 299 CRALGMTWSDIQQVIPTLTLPERRLEQVIKKG----ILFINDSYNAALTSVKAALDAL-P 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-S 421 G+RI V+G+M E+G S++ H ++ +LSL + + G L +++ + + Sbjct: 354 PPLQFSGKRIGVIGEMVELGTFSEACHREVG-ILSLAKLDLMICYGDGCLPIEEVWKKHN 412 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 VH + T + + ++ ++ GDVV++K SN ++++ Sbjct: 413 KPVHLTLTFEQVIAELKQHVLPGDVVLLKGSNKKQLWKVLEY 454 >gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 480 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 134/480 (27%), Positives = 201/480 (41%), Gaps = 25/480 (5%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ +A+ G IG + DSR P F AI+G DGHDF+ + Sbjct: 1 MSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAITGSVG 118 GA + +V+ ++ S +P V D + AL +LA R R II +TGSVG Sbjct: 61 GATVAIVDHEV----KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GEI L Sbjct: 117 KTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + P+ A++ + AHL F E IA AK+EI +GL GT LN DD + Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMAGL 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ + + + + V G V G H N L Sbjct: 237 ANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNALA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357 + +T + L+ H + FTLID+S+NANP SMKA + Sbjct: 297 AATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSMKAGL 356 Query: 358 SVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411 + L + + V LG M E+G + H + I + G H+ Sbjct: 357 NGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQDQHL 416 Query: 412 LALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINL 463 AL AL V +D + VV++K S++ G L Sbjct: 417 DALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSALAER 476 >gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter sp. Nb-311A] gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter sp. Nb-311A] Length = 465 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 264/459 (57%), Gaps = 2/459 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + A++ G +P +NGISIDSR+IAP EA+FAIKG +DGH F+ A++ GA L V Sbjct: 1 MAAAMRADRRGALP-AAINGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V + P+ VDDVL AL LA A+R R A +IA+TGSVGKT+TKE L Sbjct: 60 VEAAQRDQFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSV 118 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + + KT+A + S+NNH GVPL+LAR P D F +FE+GM+H GEI L +VRPH+AVI Sbjct: 119 VDAQGKTHASVASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEITPLVKMVRPHVAVI 178 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TT+ P HL F+GIE IA AKAEIFEG+E G + LN D++ F L ++ LGI I S Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGAVVLNRDNAQFARLHGRAKKLGIARIVS 238 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG + AD +L S + ++ G + G H+A N L L S+ AD Sbjct: 239 FGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGAD 298 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A ALS P GRG R A+ G LIDESYNANPASM AA+ VL G Sbjct: 299 LALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKLG 358 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 RRIAVLGDM E+G S H LAE ++ + ++ G + L +AL Y+E Sbjct: 359 RRIAVLGDMLELGPKSADLHRGLAEAINANAVDMIFCCGPLMRNLWNALSSGKRGGYAED 418 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L + +++ GDV++VK S +++ L + F Sbjct: 419 SVALESQVTAAIRSGDVIMVKGSLGSRMKVIVSALEKRF 457 >gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] Length = 453 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 202/471 (42%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + L + IG +N ++ D+R I P F A+KG + H Sbjct: 1 MISV-SLQALADVLSAELIG--ADCQINEVTTDTRQITPGCLFVALKGERF-----DAHD 52 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ L P V D AL +LA R + A ++A+TGS GKT Sbjct: 53 FAADALAAGAGALLVSKRLPLGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L + G++NN IGVPLTL R+ DF + ELG +H+GEI + T Sbjct: 113 SVKEMTAAILRQCGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL G +N D++ + + + Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIINADNNDWPHWQTQLV 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S + DF + + + + ++ + G H N L Sbjct: 233 GKTVWR-FSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + A ++ L GR + L+D+SYNAN SM AA VL Sbjct: 292 ALATSVGASLEAVRVGLGQLQAVPGRLFPIQLKPG---QLLLDDSYNANVGSMTAAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V GDM E+G+ ++ H + E L I V G L A Sbjct: 349 AEMP----GYRVLVAGDMAELGDEAEECHRQVGEAARLAGIDKVLTVGSLSQLLSAA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 S + + + + L + V V++K S S +++ L E+ P Sbjct: 402 SGQGEHFQDKAAVIARVAELLTEHTVITVLIKGSRSAAMEQVVRALQEKAP 452 >gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya dadantii Ech703] gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech703] Length = 453 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 127/462 (27%), Positives = 206/462 (44%), Gaps = 20/462 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + + +G + +S D+R + F A++G ++D HD+ A Sbjct: 6 LQQLAEVLGARLVG--ENLTIGEVSTDTRKLTAGCLFVALRGENFDAHDYAAD-----AV 58 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 +V + +P V D AL LA R +S A ++A+TGS GKT+ KEM Sbjct: 59 AGGAGALVVCKRLPIEVPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMT 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L G++NN IGVPLTL R+ + DF + ELG +H+GEI + T LV+P Sbjct: 119 ASILRQCGNVLYTAGNFNNDIGVPLTLLRLAPEHDFAVIELGANHIGEIAYTTELVKPET 178 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A++ IA AHL F + +A AK EIF+GL + G +N D + + S A Sbjct: 179 ALVNNIAAAHLEGFGSLAGVAQAKGEIFDGLPENGVGIINADSNDIARWQP-SLAGKTLW 237 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +S + +ADF + + + ++V G H N L + + Sbjct: 238 RFSSQPASSADFLASDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAISV 297 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A ++ LS GR L L+D+SYNAN SM AA VL+++ Sbjct: 298 GASLEAVKLGLSRLQAVPGRLF---PILLAPGKRLLDDSYNANVGSMTAAAQVLAEMP-- 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 G ++ V+GDM E+G+ +++ H + L I V G + +A S + Sbjct: 353 --GYQVMVVGDMAELGQEAEACHRQVGAAAKLAGIDKVLSVGTLSALIGEA---SGVGEH 407 Query: 427 SETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466 + L +++ + + + V++K S S +++ L E Sbjct: 408 FDNKTALTARLRALVAEHNTITVLIKGSRSAAMEQVVRALQE 449 >gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 480 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 134/480 (27%), Positives = 201/480 (41%), Gaps = 25/480 (5%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ +A+ G IG + DSR P F AI+G DGHDF+ + Sbjct: 1 MSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAITGSVG 118 GA + +V+ ++ S +P V D + AL +LA R R II +TGSVG Sbjct: 61 GATVAIVDHEV----KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++L+ L+++ T A +GS+NN IG+PLT R+ F + E+G SH+GEI L Sbjct: 117 KTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + P+ A++ + AHL F E IA AK+EI +GL GT LN DD + Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHVVPMAGL 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ + + + + V G V G H N L Sbjct: 237 ANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNALA 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357 + +T + L+ H + FTLID+S+NANP SMKA + Sbjct: 297 AATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSMKAGL 356 Query: 358 SVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411 + L + + V LG M E+G + H + I + G H+ Sbjct: 357 NGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQDQHL 416 Query: 412 LALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINL 463 AL AL V +D + VV++K S++ G L Sbjct: 417 DALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSALAER 476 >gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 202/471 (42%), Gaps = 21/471 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+WT +L A G G Q IS DSR+I + F A++G ++D F+ AV Sbjct: 31 NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120 KGA +V+ V + + V D L AL LA R R + ++AITGS GKT Sbjct: 91 AKGAAGLVLEQPPVEPVPVPVVLV---PDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM L ++ G+ NN +G+PL+L + F + E+GM+ GEI + Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IA IT + AHL+ + ++ +A AK E+F GL G + +N DD L A++ Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAARTG 267 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + + V +G H N L Sbjct: 268 QQRITYGRT---RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAA 324 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ + P R + LID++YNANP+SM AA++ + Sbjct: 325 ALATAAGVSPAEIAAGLAAYRPFAKRMQLQPFIAGLK---LIDDTYNANPSSMLAALATV 381 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 + + R +AVLGDM E+GE S + H + ++ + ++ G + +A Sbjct: 382 HNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVEAARY 439 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRLIN 462 + + + ++ + G D+V+ K S +I+ Sbjct: 440 RGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490 >gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] Length = 493 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 135/491 (27%), Positives = 207/491 (42%), Gaps = 33/491 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ ++ QA+ G + DSR + F AI G DGHDF Sbjct: 1 MMPMG-LAEIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111 + +GA +V+ ++ +P VDD + AL +LA R S T+I Sbjct: 60 VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 115 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK+++ LS++ +T A +GS+NN IG+PLT ++ F + E+G +H Sbjct: 116 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 175 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT LV P IAV+ + AHL F E IA AK+EI +GL G LN +D Sbjct: 176 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 235 Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + + + + + S+ +G+ +V G Sbjct: 236 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348 H N L + L +D L+ + FTLID+S+NA Sbjct: 296 MHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 355 Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SMKA + L + + E + AVLG M E+G ++ H + + + Sbjct: 356 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVDALIA 415 Query: 407 SGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452 G DAL + V ++ +D + G VV++K S Sbjct: 416 VGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKGS 475 Query: 453 NSCGFYRLINL 463 ++ G L Sbjct: 476 HASGLSALAER 486 >gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC 334] gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei ATCC 334] Length = 462 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + ++ + V G++ DSR + P F ++G DGH+FI A Sbjct: 3 MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPAAATA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA V D + L V D L A+ +LA ++ ++AITGS GKTTT Sbjct: 62 GAVATFVAADHLPVTTKLIT--LVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M L++ +YNN IGVP+T+ M + + + E+GM G++ L+ L Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT I AH+ F ++IA AK EI +GL+ GT N D+ L + Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP----LLQERAKK 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ++ + I N++ L Sbjct: 236 ITQERETFGLHPENTIFAHSISGHRNHTEFT----VEAWPDLTFSIPIMGEYNVVNALAA 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + + R + + ++ + YNANP +MKA I S+ Sbjct: 292 LLVGRKFHVKPEIMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419 + GR IAVLGDM E+GE S + H LAE L + V+L G + AL D L Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADTLAAKY 409 Query: 420 RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +HY + + + +Q+ + D+V++K+S+ +++ L+ Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALVA 458 >gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Leadbetterella byssophila DSM 17132] gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leadbetterella byssophila DSM 17132] Length = 433 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 125/440 (28%), Positives = 192/440 (43%), Gaps = 23/440 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI+ D+R+I FFA+KG ++G+ F A+Q GA VV+ + + Sbjct: 14 SGITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDDASLKGKE----RMIY 69 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 +DVL L LA R + +IA+TGS GKTT KE+LT L K +A G+ NNHI Sbjct: 70 CEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVLGQKYKVHATKGNLNNHI 129 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL MP D I E+G +H EI L + P IT + AHL F G E I Sbjct: 130 GVPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIAEPTHGFITNLGKAHLEGFGGEEGIR 189 Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+F+ + G +F+N +D L + + L I Sbjct: 190 KGKGELFDFLKQSGGIVFVNANDPKVRALAEERNILPI---------VYYGDDEDALLIK 240 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + + G + NM I D A +A++ ++P R Sbjct: 241 EESPVVVFESPVSGKTYTTFIGGKYNFDNMQTAHAIGRYFDVSEDKACEAIAHYNPDNNR 300 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N I ++YNANP+SM+A++ + + VLGDM E+G+ S+ Sbjct: 301 SQHVMVGTNH----FIMDAYNANPSSMEASLKSFGALKTDSPK--VVVLGDMYELGDYSE 354 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H + ++LS V L G ++ A LP+ +Y + ++ + Sbjct: 355 AEHAAIGKLLSELKFDDVVLFGENMKAALAFLPK---AYYFTDKFSMHNWLLDRKYENTY 411 Query: 447 VVVKSSNSCGFYRLINLLLE 466 ++VK S S G ++ Sbjct: 412 ILVKGSRSTGLESVLKAFQN 431 >gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] Length = 453 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 465 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 135/474 (28%), Positives = 200/474 (42%), Gaps = 40/474 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ AI G+ + P V G+S DSR I P AF A+KG +DGHDFI Sbjct: 5 TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGA------ 58 Query: 66 GLVVVNTDMVASIGSLSIP------------VFGVDDVLGALNKLAVAARLR-SKATIIA 112 + A+ S P + VDD L AL KLA R + K +I Sbjct: 59 ----ALSGGAAAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIG 114 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TGS GKTTTK ++ LS + K G++NN IG+P+TL R+ + E+ M Sbjct: 115 VTGSSGKTTTKNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGK 174 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + RP I VIT I HL I IA+AK E+ L G LN D+ + Sbjct: 175 GEIASLAAIARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWC 234 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L A + F + R + E ++ GK + V G H Sbjct: 235 RRLAA----TCPCRVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRH 290 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 ++ L L + L + +T ++L+ + R G + +++YNANP Sbjct: 291 NVEDALAALAVGFSLGVEPETMARSLADWP---AEDLRQDLRPGPGGSLVFNDAYNANPE 347 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+AA+ L + GRR+AVLG M E+G H + + + + G Sbjct: 348 SMEAALQALGALP----GRRVAVLGAMLELGPAEVELHRRVGRFAAARGLYRLITVGELA 403 Query: 412 LALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + + V T + ++ L GDVV+ K S G +++ Sbjct: 404 GEIAAGALEAGMPADQVFACLTHEEAAGHLRG-LGHGDVVLFKGSRLTGMEKVL 456 >gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. GAI101] gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. GAI101] Length = 478 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 161/476 (33%), Positives = 240/476 (50%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT + A G ++G +G+SID+R++ + F A+K DG DF+ A Sbjct: 1 MS-LWTATEAAAATGGRAVG---DWSCDGVSIDTRTLQAGDLFVALKDVR-DGQDFVATA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGAG +V+ V + P+ VDDVL L L AAR R+ A ++A+TGSVGKT Sbjct: 56 LEKGAGAALVSR--VPDGVADDAPLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML + + +A + SYNNH GVPLTLARMPVD D+ + E+GM+H GEI L Sbjct: 114 STKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPVDTDYAVIEIGMNHPGEISPLAI 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P A++TT+A HL F + IA KA IF+GLE G +N D +L AK+ Sbjct: 174 LTKPDAAMVTTVAAVHLEAFDDVAGIALEKAAIFDGLEPGGVAVINADIDHAAILMAKAV 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ I F+L+ + + + ++ G + G H A N L L Sbjct: 234 DRRLRDIEF--GENAYHFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKE----GRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + AD+ A +L + P + + +LID+SYNANP SM AA Sbjct: 292 AVAQAMGADLALAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAAA 351 Query: 357 ------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 V I +GRRIA LGDM E+G + H LA + + + + G Sbjct: 352 LEVLAASEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +L D +P ++ T L + + L GDVV+ K S S +++ + + Sbjct: 412 MRSLYDLIPAHQRGDWAATSAELLPGLGAHLDSGDVVLAKGSLSMKLGLIVDAIRK 467 >gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] Length = 489 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 143/488 (29%), Positives = 211/488 (43%), Gaps = 31/488 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ T ++ +A+ G + VP+G V DSR + F AI+G DGHD+ Sbjct: 2 MMPM-TIGEVAEAVAGRLVEGANGVPEGAVALHAVSDSRQVENGSVFVAIQGERVDGHDY 60 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLR---SKATII 111 + +GA +V+ ++ + ++P VD+ + AL LA AR R TII Sbjct: 61 VASVADQGAVAAIVDHEVPGA----AVPQIVVDNTVTALGDLAKANIARRRASGEPFTII 116 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK++ LS++ T A +GS+NN IG+PLT + + + E+G +H Sbjct: 117 GITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNNEIGLPLTALTVGEHTRYFVAEMGANH 176 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT + P IAV+ + AHL F +E IA AK EI GL G LN DD Sbjct: 177 VGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPNGIAMLNTDDEH 236 Query: 232 FELLKAKSHAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 E + A + S S+ V G+ +V G Sbjct: 237 VEAMSAVAPGEVLRFGIDESNAGRDALHACDIVTDSFDRASFTMVAGDGEQSQVALAIPG 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 H N L + L ++ + H R FTLID+S+NA Sbjct: 297 AHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVSTVERGGARFTLIDDSFNA 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM A + L++ G R+AVLG M E+G + H + + + I V G Sbjct: 357 NPDSMHAGLDGLARW-SEGAQYRVAVLGAMLELGGDEKQLHRSIGAYAAEHGIDEVVAVG 415 Query: 409 FHVLALKDALP-----------RSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSC 455 DAL ++ V ++ + I +G VV++K S++ Sbjct: 416 SPTDQALDALAGELAQGAKNADGAMAVEWAHSAAQADDMIVRIAREHEGTVVLLKGSHAS 475 Query: 456 GFYRLINL 463 G L Sbjct: 476 GLSTLAER 483 >gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] Length = 470 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 195/468 (41%), Gaps = 14/468 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T D+L A + +G + + IDSR++ P F I G +DGH+F AV K Sbjct: 3 MTLSDILTATKAVGDVGERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + + PV V D + AL LA A R + A ++ +TGS GKTT K Sbjct: 63 GAAAVLADRPLTG--LPDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+ L + T ++NNHIG+PL++ + + ELG+S GE+ L + Sbjct: 121 ELTAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDAYWVMELGISRPGEMEPLAAIAE 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHA 241 P +AVI + PAHL + +A+ K ++F L G + D + L Sbjct: 181 PDVAVIHNVGPAHLEALGDVAGVAAEKTKLFNFLRPGGVALASMDYPELWEAALAVFPRV 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ T + ++L MEV G H A+N+L Sbjct: 241 RGLSTKGQGKGRSAPYRAKYLGALPEGRGRFFLKLGELEMEVETPLTGGHFAENILAAAT 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 IL A L E R R QG +T+ID++YNANP SM+ AI+ Sbjct: 301 SAHILGAGEKQIAAGLETAVMPEQRFYCRR----QGCYTIIDDTYNANPLSMRRAIAAAV 356 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + + + VLG+M EMG ++ H L E + V+ G H A+ + L R Sbjct: 357 ETAQ--GKPLVLVLGEMREMGAHAEEEHAKLGEAAAASGARAVFYRGAHAEAVGEGLTRG 414 Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +T + + + G V + K S S + + Sbjct: 415 GYAGRFAVVDTPAAFCDMLAAMDLRGGVFLFKGSRSMRMEEYLAAFTQ 462 >gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter chlorophenolicus A6] gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter chlorophenolicus A6] Length = 488 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 136/477 (28%), Positives = 207/477 (43%), Gaps = 19/477 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +T ++ +G P + DSR P + A G H DGHDFI A Sbjct: 1 MIA-FTAAEIADITKGRL-DADPGITPTSVVTDSREATPGSLYVAKPGEHADGHDFIAAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---------SKATII 111 + GA L +V GS S P V+D + A+ LA A R + T++ Sbjct: 59 FESGAVLALVERPAARPDGS-SYPSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELTVV 117 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKTTTK++L +S T A GSYN +GVPLT+ + + + E+G + Sbjct: 118 GITGSAGKTTTKDLLAGLFASQGSTVAPKGSYNGEVGVPLTVFQADEGTRYLVIEMGATG 177 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +G IR+L +V+P I V+ + AH F G++ IA AK E+ EGL GT +N DD Sbjct: 178 IGHIRYLADMVKPDIGVVLAVGTAHAGEFGGVDNIALAKGEMVEGLSADGTAIINLDDDR 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 +++++ A + + G+ A L ++QL G Sbjct: 238 VAAMRSRTTATVLG-FSAEGRGGAAVQALSADTNEHGNPEFDLQLPGSDGPQHVASKLIG 296 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + + A + A A + R T+I+++YNANP Sbjct: 297 AHHTGNLLAAAAAAFAAGMSGADIAAGLSKQSAASRWRMERTERADGVTVINDAYNANPE 356 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+AA+ L+ + R AVLG M E+G+ S H + + NIS + + G Sbjct: 357 SMRAALRTLADL--GRGRRTWAVLGAMLELGDDSIREHTAVGTQVVRLNISRLVVVGREA 414 Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 AL ++E D + + + L GD+V+ KSSNS G L + + Sbjct: 415 RALYVSAVQEGSWGDECLFAENPDEAYELLNAELEPGDLVLFKSSNSVGLRHLGDRI 471 >gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] Length = 934 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 121/442 (27%), Positives = 201/442 (45%), Gaps = 21/442 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 IS D+RSIA + F A+KG +DGH ++ A++ GA VV A +++P F + Sbjct: 499 SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDTA----VALPQFVL 554 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYNN 145 D AL +++ R + ++A+TGS GKTTTKEM+ A G+ NN Sbjct: 555 GDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRGNLNN 614 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLT+ R+ +FELGM+H GEI L + +P +A++ H +E Sbjct: 615 DIGVPLTVLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVALVNNAQREHQEFMLTVEA 674 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A + + L G DD++ +L G +T+ FG S + D + Sbjct: 675 VARENGTVIDMLPVDGIAVFPGDDAYSDLWAE---LAGTRTVLRFGFSPDFDVYADQIHA 731 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + S + G H +N L +++ ++ L F+P G Sbjct: 732 EPTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSG 791 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + A LID++YNANP S++AAI VL+++ +G+R+ VLGDM E+G Sbjct: 792 RMQPHALAGGYQ---LIDDTYNANPDSVRAAIDVLAEL----DGKRVLVLGDMGEVGANG 844 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H ++ I + G + A +++ L + + + Sbjct: 845 DAMHAEVGAYAHERGIDVLLAFGTACVHAVQAFGAGGQS--FTSIEALNSRLLTEMPA-- 900 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 ++VK S S R++ L +E Sbjct: 901 HILVKGSRSTRMERVVRALEKE 922 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 95/485 (19%), Positives = 171/485 (35%), Gaps = 51/485 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L +++ + H + +D+R ++ + FFA G DG D+I A Sbjct: 1 MT-LMNAQEVISWLSRHVSPKAQ------LCLDTRQLSAGDVFFACVGLTGDGRDYIAQA 53 Query: 61 VQKGAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 V+ GA +V+ D AS ++ +PV V D+ G L + R +++A+TG+ Sbjct: 54 VEAGAAAIVMQADDRASATPAIDVPVLAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGV--------PLTLARMPVDVDF 162 GKT+ + L AL++ I + NN GV Sbjct: 114 GKTSCVQWLAAALNAEGTPCGTIGTLGVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGA 173 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + L S +G + VR IA T + HL ++ AK + Sbjct: 174 QVVALEASSIGLDQGRLDQVRIVIAAFTNLTHDHLDYHGTLDNYQRAKFSL-FAWPGLRG 232 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + L + + YS A Q + V + +++ Sbjct: 233 AVVNVDDPAGKQLVS-TLPPASTLAYSISGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQ 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---CALNQGFF 339 ++ +G H N+L+ G++ L D+ + LS EGR + Sbjct: 292 LLTRLVGEHNVANLLLVTGVLQQLGWDLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQ 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++ Y P ++K A+ L ++ G+ I V G G + +++ Sbjct: 352 AMVVVDYAHTPDALKRALLALRDVARVRGGKLICVFG----CGGSRDRSKRPMMGRIAVE 407 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVV 448 V L+ + +K + + V +D + S DVV+ Sbjct: 408 LADEVVLTNDNPRLEEPLDIIAQIKSGMSTAARVE----LDRALAILSSIWAADAHDVVL 463 Query: 449 V--KS 451 + K Sbjct: 464 LAGKG 468 >gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 460 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 215/474 (45%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M + L G ++ I+ D+R I P+ F A+ G ++D H F Sbjct: 1 MISI-NLIKLTSITNGILYCSNYATLHSISIHSITTDTRKITPKCLFIALIGKNFDAHMF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A+ KGA +++ IP V + AL K+A R ++ AT+IAITGS Sbjct: 60 VNEAISKGAAALLLEKQCYPKNV---IPQIIVQNTTIALGKIASWIRDQTNATVIAITGS 116 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+ KEM + L + T + + NN+IGVPLTL + + I ELG ++ +I Sbjct: 117 SGKTSVKEMTSSILKNCGNTISTFQNLNNNIGVPLTLLNLNKSHKYAILELGANYPKDIE 176 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P+IA+I I +HL+ F + +A AK EIF GL K G N D +++ K Sbjct: 177 YTTKITKPNIALINNIYHSHLAGFKSLFGVAQAKQEIFLGLRKNGIAIYNKDSNYWSKWK 236 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 I F KN+ ++ S ++ + V +GYH N Sbjct: 237 KNLLTQKIIN---FSIKKNSTIFASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNA 293 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L I + ++ LS R + + T+I+++YNAN ASM A Sbjct: 294 LAAATIAISINIPLEIIKIGLS---SLPILKNRLQIIRLNKYKTIINDTYNANTASMIVA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I +L IS G ++ V GDM E+G+ +H + + NI+ V+ G + Sbjct: 351 IKILENIS----GYKLFVAGDMLELGKNDVLYHKIIGNTIYNSNINEVFSIGKLSKEISI 406 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468 A S H+ D L +++ L++ + ++VK+S S ++ L++E+ Sbjct: 407 A---SKKGHHFYNSDELLKNLKNKLLNKKIITILVKASRSEKLDVIVEQLIKEY 457 >gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola F0289] gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola F0289] Length = 437 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 116/439 (26%), Positives = 182/439 (41%), Gaps = 21/439 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A+QKG VV+ A VD Sbjct: 16 VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKAD--DGRYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ LS + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQ 265 K E+++ L+ + + L + I ++G+ + AD Q Sbjct: 194 KGELYDFLKAHDGLLF--LNESNADLMEMAAQREFSRIITYGQDETADVQGNVVSCAPFL 251 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + Q + EV H IG + NML + I AL + P Sbjct: 252 KFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIP--- 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 LI ++YNANP+SM AAI + + +A+LGDM E+G S Sbjct: 309 -HNNRSQLTETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDK---MAILGDMRELGAAS 364 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + ++L I +VWL G + + + ++ + I + Sbjct: 365 GEEHQKVVDLLKNTGIDNVWLVGEEFGKTRTSFRK------FHDVEEVKAEIARCRPENH 418 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K SN + L LL Sbjct: 419 YILIKGSNGIKLFELPALL 437 >gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] Length = 454 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 206/470 (43%), Gaps = 24/470 (5%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T D+L IG ++ +S D+R++ F A+ G +D HDF+ Sbjct: 1 MISVALTTLQDVL---NAELIGQ--DVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVE 55 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A Q GA ++V+ + + +P V D AL +L + + IA+TGS G Sbjct: 56 TAKQNGASALLVSK-----VVDIDLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCG 110 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT KEML LS +T G++NN IGVPLTL R+ D+ + ELG +H+GEI + Sbjct: 111 KTTVKEMLAAILSQKGQTLYTAGNFNNDIGVPLTLLRLTPFDDYAVIELGANHIGEIAYT 170 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV+P +A++T +A AHL F ++ +A AK EIF+GL G +N D + + Sbjct: 171 TSLVKPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDFWTPA 230 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + T+ GK AD++ + + V + + Sbjct: 231 LEGKQVLTMTVTGK--PADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVANAV 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I + T + R + + LID+SYNA+ A+MKAA+ Sbjct: 289 LAAIAATKIDSRVTMDDVVRGLGSVSPVKGRGAISFPRPGLRLIDDSYNASLAAMKAAVD 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L +G +I VL DM EMGE + S H D+A LS +I V G + + Sbjct: 349 LLDSF----DGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLTYGLASAVISE-- 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLE 466 + E L + + V+VK +N ++ + E Sbjct: 403 --RCGGQHFEDKSALIAHVVKLMNTKREVSVLVKGANGMKMSEVVAAIEE 450 >gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 200/471 (42%), Gaps = 21/471 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+WT +L A G G Q IS DSR+I + F A++G ++D F+ AV Sbjct: 31 NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120 KGA +V+ V + + V D L AL LA R R + ++AITGS GKT Sbjct: 91 AKGAAGLVLEQPPVEPVPVPVVLV---PDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM L ++ G+ NN +G+PL+L + F + E+GM+ GEI + Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IA IT + AHL+ + ++ +A AK E+F GL G + +N DD L A++ Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAARTG 267 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + + V +G H N L Sbjct: 268 QQRITYGRT---RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAA 324 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ + P R + LID++YNANP+SM AA++ + Sbjct: 325 ALATAAGVSPAEIAAGLAAYRPFAKRMQLQPFIAGLK---LIDDTYNANPSSMLAALATV 381 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + R +AVLGDM E+GE S + H + ++ + ++ G + A Sbjct: 382 HNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAARH 439 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRLIN 462 + + ++ + G D+V+ K S +I+ Sbjct: 440 RGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490 >gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter atlanticus HTCC2559] gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter atlanticus HTCC2559] Length = 422 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 119/437 (27%), Positives = 204/437 (46%), Gaps = 25/437 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GIS D+R I FFA+KG +++G+ + A+ +GA VV++ + Sbjct: 11 TGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEEQFKK----DDRYIL 66 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL L +LA R II++TGS GKTTTKE++ L+ KT A +G+ NNHI Sbjct: 67 VDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNLNNHI 126 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M D + GI E+G +H+GEI L ++ +P IT AHL F E + Sbjct: 127 GVPLTLLSMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYITNFGKAHLEGFGSEEGVV 186 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L+ I + + ++FG + Sbjct: 187 IGKSELYKHLKSHDKIVFVNSND-----AKQVDLTKGMKTFTFGL------KQSDVWVSF 235 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + V++ ++ + + IG + + N+ + I ++A+ + P R Sbjct: 236 KNVNPLVEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDKHIVEAVENYVPSNNRS 295 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + T++ ++YNANP+SMK A+ L ++ + A+LGDM E+G ++ Sbjct: 296 ----QIIKKDNLTILLDAYNANPSSMKVALENLQALNDTPK---YAILGDMFELGASAKK 348 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H+ +A++ + ++ V L G + L +Y+ T + L S G + Sbjct: 349 EHMSIAKLAASIHLDGVLLVGENFSNL--NFDAPGIAYYTSTKELLENEDFSKYKTG-TL 405 Query: 448 VVKSSNSCGFYRLINLL 464 +VK S ++++ L Sbjct: 406 LVKGSRGMALEQILDKL 422 >gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] Length = 453 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. CC9902] gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9902] Length = 449 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 129/463 (27%), Positives = 207/463 (44%), Gaps = 24/463 (5%) Query: 6 TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T L+ A G +G P + I DSRS+ + F + G ++DGH F+ Sbjct: 4 TVRQLI-ACWGAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSAL 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV + S + + VDD L A +LA+ R ++A+TGS GKTTT+ Sbjct: 63 GAQAAVVEQSWSDPLPS-DLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTR 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E++ AL+ + + G+ NN IGVPLT+ + E+GM GEI L+ Sbjct: 122 ELIRAALAPLGDVHCSEGNNNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTE 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVIT I AH+ E IA+AK EI L+ G + + D+ E +K + Sbjct: 182 PDVAVITNIGTAHIGRLGSREAIAAAKCEITAALKSDGVVVIPAGDALLETALSKVWSGR 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + QL+ + + G H A+N+L+ L + Sbjct: 242 VVRVRLADDTP--------VAADCIGAIDAGQLEVGAHRLPLPLEGRHNARNVLLALAVA 293 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ A+ V P + + L TL+DE+YNA+P ++ AA+++L Sbjct: 294 D-QLGVDSASLNAMEVSVPGGRNRRLVQGGL-----TLLDETYNASPEAVMAALTLL--- 344 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421 GRR AVLG M E+G S H D+A + + + + G A+ +A Sbjct: 345 -SSQPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGL 403 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + ++ L GDVV++K+S RL+ LL Sbjct: 404 PRLAVVSSPEDAAKPLKEWLRPGDVVLLKASRGVALERLLPLL 446 >gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] Length = 444 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 204/467 (43%), Gaps = 31/467 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M WT ++ + G+ G +S D+R++ + F A++G H+ G DF+ A Sbjct: 1 MIAAWTAKEIATIVGGYLRGND-DWRALEVSTDTRTLTAGQLFIALRGEHFCGEDFLQTA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA V+V + IP V+D L AL LA A R +S A II +TG+ GKT Sbjct: 60 QERGAVAVIVQE-----YREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS+ KT A +G+ NN IGVPLTL R+ + F + E+G +H +I L Sbjct: 115 STKEMLYRILSAQGKTLATVGNLNNDIGVPLTLLRLQNEHRFAVIEMGANHPRDIERLVK 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P +AVIT ++ AHL F ++ +A+AK+EI+ G + +N D + Sbjct: 175 IVCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRFSS--GALVVNADLPQAAAWLQEF- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G ++I +F ++A + ++ + Q + G Sbjct: 232 --GHRSIQTFALEQSAQWTAADISDNGQRFTLMHLAQRAEIAWQLCGRHNVANALAATAA 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ R TL D++YNANPAS KAAI V+ Sbjct: 290 ASFAGVSLAQSAQALQGLRLQQSRLVALHVR------HHTLYDDTYNANPASFKAAIEVI 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G M E+G S + H ++A I H W V P Sbjct: 344 -----KTAAHSLVIAGKMGELGAQSAALHAEVAAFAREKGIKHFWAL--SVPDYAAGFPD 396 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLL 464 E ++ + ++ L G+ V+VK S S R+I L Sbjct: 397 ---ARLFEDVEAVNQALRDIL-AGEKPYTVLVKGSRSARMERVIAAL 439 >gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] Length = 427 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 132/439 (30%), Positives = 202/439 (46%), Gaps = 18/439 (4%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 +ID+R + P F A+KG +DGHDF A +V+ + P V D Sbjct: 2 TIDTRKVTPGCLFVALKGERFDGHDFAED-----AVAAGAGALLVSKRLLVGGPQLVVKD 56 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN IGVP Sbjct: 57 TRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGVP 116 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A AK Sbjct: 117 LTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAK 176 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EIF GL GT +N D + + + H + G +++ DF + S+ + Sbjct: 177 GEIFAGLPAKGTAIINADSNDWPHWQETLHHKRVWRFAPHG-AEDIDFFASDVRIASQVT 235 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + ++ + G H N L + + A + + L+ GR Sbjct: 236 YFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVREGLTQLQAVPGRLFPI 295 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 A L+D+SYNAN SM AA VL+++ G R+ V+GDM E+GE + H Sbjct: 296 ELAAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVDCHR 348 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448 + E I V G L DA S + + + L + L++ V V+ Sbjct: 349 QVGEAAKQAGIDKVLSVGTLSQTLSDA---SGCGEHFQDKNTLAARVSELLLEHPVITVL 405 Query: 449 VKSSNSCGFYRLINLLLEE 467 +K S S ++ L E+ Sbjct: 406 IKGSRSAAMEDVVRALQEK 424 >gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] Length = 425 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 27/436 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I FFA+KG +++G+++ A++KGA +V+ + A+ V Sbjct: 16 VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYATSDKT----ILVK 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L KLA R A +I +TGS GKTTTKE++ LSS KT A IG+ NNHIGV Sbjct: 72 DVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D + I E+G +H EI FL L +P IT AHL F +E + Sbjct: 132 PLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNFGKAHLEGFGSVEGVIEG 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+++ L L A K + K + +K Sbjct: 192 KSELYDYLLANQKSI---------FLNADDPIQHKKLGHYIKKYGFTTAKKEYFKIKFLI 242 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 S V L + +E+ IG + N + + +++ A+ + P+ R + Sbjct: 243 SDPYVSLSVEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDIKTAIESYIPQNNRSQI 302 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 +I ++YNANP SMK A+ + +S + IA LGDM E+G S H Sbjct: 303 IESNGT----RIILDAYNANPTSMKVALENFNSLSGEPK---IAFLGDMFELGATSNEEH 355 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDVVV 448 ++A++ S +IS V+L G + K L + + + L L++ L ++ Sbjct: 356 QNIADLTSSLDISEVFLVGDNFYRTKTPLKK------FKNYEALALYLADVELPSNSTIL 409 Query: 449 VKSSNSCGFYRLINLL 464 +K S RL+ LL Sbjct: 410 IKGSRGMALERLLELL 425 >gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] Length = 477 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 187/467 (40%), Gaps = 16/467 (3%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D+ A G + V G ++DSR + P FFA+ G DGH F+ A+ GA Sbjct: 7 DVAAATGGRLVAGSQGVTVEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGA 66 Query: 69 VVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTKE 124 V+ + + + P V V D AL LA R R+ ++ ITGS+GKTTTKE Sbjct: 67 VIARPLAEVLPDGAPPGTAVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKE 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L+ G+YN +G+PLTL + + E+ M LGEI L + P Sbjct: 127 MAAAVLARRFAVLKSAGNYNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEP 186 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + V+T +A +HL +E +A AK E+ E L + G LN D A + Sbjct: 187 DVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRA-MAARTRARV 245 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T G+ + + + + + G + V G L + Sbjct: 246 LTFGHDGEGADVRAVNVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVGV 305 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D T L+ P R + + G +TL + YNA+P S +AA+ L Q++ Sbjct: 306 ALGLDAATIAAGLAEARPAALRNEIRQ----AGPWTLYIDCYNASPTSTRAALHALRQVA 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420 G R +A+LGDM E+G+ + H + + + G + + Sbjct: 362 --GSRRAVAILGDMFELGDWAVEGHRETGREAART-ADVLLAVGRWAPQMVEGWIQAGGA 418 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L + L GD +++K+S ++ L Sbjct: 419 GAAAAAYPDKAALLGELDRWLRPGDAILIKASRGMAMEEVVEALTAR 465 >gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] Length = 470 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 121/478 (25%), Positives = 193/478 (40%), Gaps = 25/478 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T + + + G P V+G + IDSR AP F A++G DGHDF Sbjct: 1 MIAL-TLDRIAKITRSRLRGSAQPTDTVDGPVVIDSREAAPGSLFVALRGSRVDGHDFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV---DDVLGALNKLA--VAARLRSKATIIAI 113 AV+ GA V+ + + P V DD + A A II + Sbjct: 60 AAVRAGATAVLCSRP-------VDAPHLLVDGGDDAVVAALAKLARAVVAELPDADIIGV 112 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTK++L L I T A GS+NN IG PLT+ R F E+ +G Sbjct: 113 TGSSGKTTTKDLLAQTLQRIGPTVAPPGSFNNEIGHPLTVLRADQTTRFIALEVAARGVG 172 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I L + P I V+ + AH+ F + IA AK E+ E L + ++ + Sbjct: 173 HIAHLCQIAPPRIGVVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDD 232 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHM 292 + + + S+G + +AD + + + + V +G H Sbjct: 233 AVIG-MASRTAARVVSYGLAPDADVRAEGIALDERGRPRFTLAIGEDTAPVSLRLVGTHQ 291 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L ++ L V ALS P R T+++++YNANP S Sbjct: 292 VHNALAVAAVLRELGEPVTAIAAALSEAGPV--SRWRMEVTERPDGVTIVNDAYNANPES 349 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA+ L+ ++ R AVLG M E+G ++ H + +++ + + G Sbjct: 350 MSAALRTLATLAS--GRRAFAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITVGEQAA 407 Query: 413 ALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ D + ++ L D+V++K S G ++ L++ Sbjct: 408 SIADGAASVADWKGETVTVADVTEAVAVLKERLRPKDIVMLKGSRVAGLEQVAEQLID 465 >gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 481 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 129/484 (26%), Positives = 203/484 (41%), Gaps = 26/484 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ + ++ +A+ G + G P DSR F AIKG DGH F+ Sbjct: 1 MVPM-SVEEIAKAVDGRLVAGDGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHGFVDK 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---ARLRSKA--TIIAIT 114 +GA +V+ ++ ++P V+D + AL LA R + +I +T Sbjct: 60 VADQGAAAAIVDHEVAC----TTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFDLIGLT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTTK++L+ LS++ T A IGS+NN IG+PLT R+ D F + E+G +H+GE Sbjct: 116 GSVGKTTTKDLLSALLSTLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGE 175 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I LT + P+ ++ + AHL F E IA AK+EI +GL GT LN DD + Sbjct: 176 IARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVP 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + + + + + G+ + V G H Sbjct: 236 MAQFASGDVLWFGQGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVM 295 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353 N L + + + L+ H Q F LID+S+NANP SM Sbjct: 296 NALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDSM 355 Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-- 409 KA + L + + + V LG M E+G + H + E + + + G Sbjct: 356 KAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVGSPS 415 Query: 410 ------HVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVD--GDVVVVKSSNSCGFYR 459 +L + R+ V +T+D + + VV++K S++ G Sbjct: 416 DAHLNVLAESLAEGATRGRAASVDCVQTIDEAERIVFDLAKNHTDTVVLLKGSHASGLSA 475 Query: 460 LINL 463 L Sbjct: 476 LAER 479 >gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola CRIS 18C-A] gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola CRIS 18C-A] Length = 437 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 116/439 (26%), Positives = 183/439 (41%), Gaps = 21/439 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A+QKG VV+ A VD Sbjct: 16 VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKAD--DGRYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ LS + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQ 265 K E+++ L+ + + + L + I ++G+ + AD Q Sbjct: 194 KGELYDFLKAHDGLLFLNESNV--DLMEMAAQREFSRIITYGQDETADVQGNVVSCAPFL 251 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + Q + EV H IG + NML + I AL + P Sbjct: 252 KFIWQALSHQPSSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIP--- 308 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 LI ++YNANP+SM AAI + + +A+LGDM E+G S Sbjct: 309 -HNNRSQLTETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDK---MAILGDMRELGTAS 364 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + ++L I +VWL G + + + ++ + I + Sbjct: 365 GEEHQKVIDLLKNTGIDNVWLVGEEFGKTRTSFRK------FHDVEEVKAEIARCRPENH 418 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K SN + L LL Sbjct: 419 YILIKGSNGIKLFELPALL 437 >gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 435 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 205/465 (44%), Gaps = 31/465 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + ++G IG G VN I DSR++ F ++G DGH FI A Q G Sbjct: 1 MRAEEVAKIVKGKLIG---NGKVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNG 56 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + G + V + A L R T IAITGSVGKTTTKE Sbjct: 57 ASGTLSERTLPIPEGKF---LIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKE 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +LT S KTY + S+NN +G+ TL+ +P+D + I ELG + GEI L +V+P Sbjct: 114 LLTHVFSKFFKTYRNVKSFNNILGLTYTLSNLPLDTELYIQELGTNRQGEIPELVEIVKP 173 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I+V+T + AH + F I +I K I EG + Sbjct: 174 EISVVTAVEKAHTAGFKDISDIVKEKLSITEG--------------AILSIVPIQFKEFS 219 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 K+ + + D +L + ++ ++ G+ ++ G + + L+ +G+ Sbjct: 220 KSKETITFGREGDIKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAE 279 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +++ + + F P E R LID+SYNANP SM+ AI VLS Sbjct: 280 VFKVNIEKVSELIRTFTPPEMRL----TVEQLNKVILIDDSYNANPKSMENAIKVLSL-- 333 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 E ++A++G+M E+GE S+ H + E+L+ + + G + Sbjct: 334 --QELPKVAIIGEMLELGEESKKEHEKIGELLNHAKVETLIAYGKETESTFKVFKGKKS- 390 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 Y + + L FI++ G V+VK S ++ ++ E + Sbjct: 391 -YFTSQEELIKFIKTFHFQGKAVLVKGSRGNRLEKIARIIRERYK 434 >gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] Length = 444 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 200/435 (45%), Gaps = 21/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R I FFA+KG ++G+ F A+ KGA +VVV+ + V Sbjct: 31 VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEP----QNLQDDRIILVK 86 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L +L LA A R + +I +TGS GKTT+KE++ L + + G+ NNHIGV Sbjct: 87 NGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNNHIGV 146 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL +P + + E+G +HL EI L+ + +P + +T AHL F G E + Sbjct: 147 PLTLLSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNFGHAHLEGFGGFEGVVKG 206 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E++ L + L D +L A +++ SF K+++ + + Sbjct: 207 KSELYNFLHEHHKTVLINADDPLQL----QQAKAVESQISFSKNESTQATYCIELKENVN 262 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++V ++ + G + + ++P R + Sbjct: 263 NKIQVVVEDVVIRSNLTGNYNWSNVAA--AISFGKHFGLSPKEIKNGIENYYPANHRSQL 320 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + +TL+ ++YNANP+SM+A+++ S +G + +LGDM E+GE S+ H Sbjct: 321 IQ----KDKYTLLMDAYNANPSSMEASLNNFSTF----DGSKTVILGDMFELGESSKVNH 372 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A++ ++L G + ++ + + E D L +++ ++ +++ Sbjct: 373 QKIAQLTKDLGFEKIYLVGNNFSKIEGDFSD---IQFFEDRDSLVNYLKKHPIETKNILI 429 Query: 450 KSSNSCGFYRLINLL 464 K S+ L N L Sbjct: 430 KGSHGMRLDLLENEL 444 >gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Leuconostoc gasicomitatum LMG 18811] gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] Length = 441 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 124/449 (27%), Positives = 204/449 (45%), Gaps = 32/449 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 G + G++ +S+ + + F A+ + DGH++I +A+ GA V+V+ V + I Sbjct: 19 NGLITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKHV---INTKI 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P VDD L AL +L R + TIIAITGS GKTTTK+ML +++ +T+ ++ Sbjct: 75 PAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPENF 134 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVP+TL MP + + + ELGM G++ L+ LVRP +A+IT I AH+ F Sbjct: 135 NNEIGVPMTLLMMPENTEVLVVELGMDRPGQLTVLSRLVRPDVAMITMIGEAHIEFFKTR 194 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 IA AK EI GL+ G +F+ +D+ Q+ + Sbjct: 195 ANIARAKLEIVSGLKSDGVLFIPFDEPLL-------------------TEAIVQRQVILF 235 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q + I N++ L +S K Sbjct: 236 GQGVNNIEAFSDHTMFVYQNTQFAIPLIGGYNIMNALAAISAGILLHIDLKKVAKALQTF 295 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R + LI + YN+NP ++ A ++ L I + VLGDM E+G+ Sbjct: 296 DLTKNRTERLVTARGVVLISDVYNSNPTAVAAVLATLKAIPAP---HKYVVLGDMLELGD 352 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGF----HVLALKDALPRSIHVHYSET--MDGLFLFI 437 + H +L + + + V+L G ++ + A S+ H T +D L L + Sbjct: 353 QANKLHANLGQKVLDSGVDGVYLVGPLLNKNMAPIIQAHIDSVDFHQYATDQLDQLRLDL 412 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 Q+ GDV+++K+S+ ++N L++ Sbjct: 413 QTLGEKGDVILLKASHGIHLETVVNALMK 441 >gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] Length = 427 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 131/439 (29%), Positives = 208/439 (47%), Gaps = 18/439 (4%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 +ID+R + P F A+KG +DGHDF A+ GAG ++V+ ++ P V D Sbjct: 2 TIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVE-----APQLVVKD 56 Query: 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 AL +LA R + A ++A+TGS GKT+ KEM+ L K G++NN IGVP Sbjct: 57 TRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGVP 116 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + +A AK Sbjct: 117 LTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAK 176 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EIF GL GT +N D + + + H + G +++ DF + + + Sbjct: 177 GEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWRFSPHG-AEDIDFFASDVRITPKTT 235 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + ++ + G H N L + + A + + L+ GR Sbjct: 236 YFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVRQGLTQLQAVPGRLFPI 295 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + L+D+SYNAN SM AA VL+++ G R+ V+GDM E+GE + H Sbjct: 296 ELSAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVDCHR 348 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448 + + + V G AL +A S + + + L + L++ V V+ Sbjct: 349 QVGDAAKQAGVDKVLSVGVLSQALSEA---SECGEHFQDKNTLTARVSELLLEHPVITVL 405 Query: 449 VKSSNSCGFYRLINLLLEE 467 +K S S ++ L E+ Sbjct: 406 IKGSRSAAMENVVRALQEK 424 >gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 200/471 (42%), Gaps = 21/471 (4%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+WT +L A G G Q IS DSR+I + F A++G ++D F+ AV Sbjct: 31 NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120 KGA +V+ V + + V D L AL LA R R + ++AITGS GKT Sbjct: 91 AKGAAGLVLEQPPVEPVPVPVVLV---PDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM L ++ G+ NN +G+PL+L + F + E+GM+ GEI + Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P IA IT + AHL+ + ++ +A AK E+F GL G + +N DD L A++ Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAARTG 267 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + + V +G H N L Sbjct: 268 QQRITYGRT---RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAA 324 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + L+ + P R + LID++YNANP+SM AA++ + Sbjct: 325 ALATAAGVSPAEIAAGLAAYRPFAKRMQLLPFIAGLK---LIDDTYNANPSSMLAALATV 381 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + R +AVLGDM E+GE S + H + ++ + ++ G + A Sbjct: 382 HNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAARH 439 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRLIN 462 + + ++ + G D+V+ K S +I+ Sbjct: 440 RGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490 >gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 481 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 118/491 (24%), Positives = 194/491 (39%), Gaps = 33/491 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M+ + T + + G + + + DSR I E F A+ G +D HD Sbjct: 1 MSAMTTLAQVHAMLPGSILVNISLEAAQALSITRVGTDSRQIDAGELFVALAGERFDAHD 60 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 F+ GAG +++ ++P ++D AL +LA A R+ + +TG Sbjct: 61 FLSDVASSGAGAALISNK---DKCPKNLPAVCIEDTRAALGQLAKAWRVTRHIPLALVTG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 S GKTT KEM+ + G+ NN IG+PLTL ++ + ELGM+H Sbjct: 118 SNGKTTVKEMIASIFKAAVGESHTLVTKGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHP 177 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE L + + +IA+I H + + +A A++ L + G D F Sbjct: 178 GETALLADIAQANIALINNAQREHQEFMATVAAVAQEHADVIRALPQDGIAVFPGDSEFT 237 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 +L + + + NA + +EV + S+++ + +G H Sbjct: 238 DLWRKAAADRKVLDFVLSSTQTNASSAVGGKLL--NDGRIEVNTENGSIQIQLNTLGNHN 295 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L + + + L F P GR + TLID+SYNANP S Sbjct: 296 VRNALAASAVAIAAGISLKKIQEGLESFQPVNGR---MQAKTIDANHTLIDDSYNANPDS 352 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++AAI L VLGDM E+G+ FH ++ + IS ++ G Sbjct: 353 VRAAIDALK----QSGNNAWIVLGDMGEVGDQGPEFHQEVGAYAAEQGISKLFALGEQCQ 408 Query: 413 ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDV-------VVVKSSNSCGFYR 459 + + MD L ++ +L + ++VK S R Sbjct: 409 FAIQGFESAKGKSALSSATHFSNMDSLIAQLRDALHAQALGTNQHLNILVKGSRFMRMER 468 Query: 460 LINLLLEEFPA 470 ++ LLEE A Sbjct: 469 VVQALLEEAKA 479 >gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] Length = 453 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 212/473 (44%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG ++ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--ADRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + K +AITGS GKT Sbjct: 58 VIGGAVALLVEHELDA-----DCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F IE + AK EI++GL + +N D + E K+ Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIEGVKRAKGEIYQGLREGAVAIVNLDSNGGEHW--KTV 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 NADF R + + + + ++V IG H N L Sbjct: 231 LADKTVKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + L+ +GR + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIAHGLAHLSKVKGRVDLTHLRDDI---TLIDDSYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + ++ V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] Length = 458 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 207/479 (43%), Gaps = 37/479 (7%) Query: 5 WTFHDLLQAIQGHS--------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 ++L+ + + + V I+ D+R I + F A+ G ++DGH F Sbjct: 1 MNVNELVTVLGSNFQKQKSYFNLSSFDDIKV--INTDTREIQKGDVFIALSGKNFDGHLF 58 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I A++KGA +V++ + + + + + V L A ++A R + K IIAITGS Sbjct: 59 IREAIEKGASIVILEQEALVNS-TYKVSHIVVGSALKAYQQIANWWRNKYKIPIIAITGS 117 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKTTTKE++ +L + + +YNN IGVP TL ++ D+ + E+GM L EIR Sbjct: 118 VGKTTTKELIAASLGMYGQVHKTYDNYNNEIGVPRTLLKLSKHHDYAVIEMGMRDLEEIR 177 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT +++P I +IT I AH+ E IA AK E+ + LN DD Sbjct: 178 LLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQAKCELLSEMSLDSIAILNNDDELLMKTA 237 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + T + + L+ + + G H A N Sbjct: 238 MRIWKGKTIT------------YGLNKGDIIGKLINDRTLRVEGLNFPLPLSGRHNAINY 285 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L + L D K + E R + G L+DE+YNA SM Sbjct: 286 LAALAVTKSLNLDWKKFTKQIK----VEMPQGRSQKNYLPGDIILLDETYNAGLESM--- 338 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLAL 414 + L+ + R IAVLG M E+G S FH ++ E I +++ A+ Sbjct: 339 KAALNMLKDTPGKRHIAVLGAMKELGVNSSQFHREVGETAQALGIDVLYILIRDEEARAI 398 Query: 415 KDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + R+I V + + LF + + + +GD ++ K+SNS L+ + + F Sbjct: 399 PNGIKNIDGVRNIKVICCLSPEKLFEQLINDISEGDRILFKASNSVKLKSLVEQICKYF 457 >gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 132/456 (28%), Positives = 197/456 (43%), Gaps = 22/456 (4%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A+ IG + +S DSR+I P + F A+ GP +DGHD++ KGA V+V Sbjct: 4 ALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVER 61 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS- 131 ++ + +P V D AL +L R + + A+TGS GKTT KEML L Sbjct: 62 EVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRT 117 Query: 132 ---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + A G+ NN +GVPLTL ++ + ELG S +GEI + L RPH+A+ Sbjct: 118 QAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAI 177 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT AH+ F G E+I AK EI EGL GT LN DD F+ KA+ A G + Sbjct: 178 ITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKAR--ASGRPLLT 235 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ADF+ ++ + V + + + Sbjct: 236 FSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALG 295 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 I A + L +ID+SYNANPASM AAI +LS S Sbjct: 296 VPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAAIDILSGFS---- 349 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 GR + VLGDM E+G ++ H ++ + +S ++ G + A + + Sbjct: 350 GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQAFGATGR--HFA 406 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 L + + +++K S S +++ L Sbjct: 407 DQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 441 >gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 487 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 128/493 (25%), Positives = 195/493 (39%), Gaps = 40/493 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + D+ +A+ G V+ + DSR +AP F A+ G DGHDF Sbjct: 1 MIRL-SLADIAEAVGGRLHRADGSEIVSASVEFDSRKVAPGGLFVAVPGERVDGHDFAAR 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------LGALN----------------K 97 AV GA V+ + + P V V L AL Sbjct: 60 AVADGAAGVLAARE-------VDAPAVIVPPVPAEATGLMALAGDTDGSGAAVLAALARL 112 Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 + T++ +TGS GKT+TK+++ L + T A GS+NN +G P T R Sbjct: 113 ARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPPGSFNNELGHPWTALRAD 172 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D + EL +G I L + P I + + AHL F E +A AK E+ E L Sbjct: 173 EDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELVESL 232 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G LN DD + +++ A + S G A+ + + + Sbjct: 233 PADGVAVLNADDPLVAAMASRTRARVVLVGESPGAHVRAEDIVLDEQARPSFTL---VAP 289 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 S +V G H N L I L A ++ LS R R A Sbjct: 290 QGSAQVSLPLHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRVSAR--RMEVAETAD 347 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+++++YNANP SM+AA+ L+ ++ GR AVLG M E+GE H ++ + Sbjct: 348 GVTVVNDAYNANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLAV 407 Query: 398 LYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 NI + + G + +D +++ L GDVV+ K+S Sbjct: 408 RLNIDRLVVVGDQAAGMHHGASLEGSWGEESVLVPDVDAAVALLRAELRPGDVVLAKASK 467 Query: 454 SCGFYRLINLLLE 466 +R+ L+E Sbjct: 468 VAALWRVAEALIE 480 >gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] Length = 464 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 209/469 (44%), Gaps = 28/469 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL A + V+ ++ DSR+ FFA++G +D H F+ Q+GA Sbjct: 9 LSELLSA--KEVNPPSAELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAK 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++VV A +S+P V + AL +LA+ R + + A+TGS GKTT KEM Sbjct: 67 ILVVEHADPA----VSVPQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVKEMT 122 Query: 127 T----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + + G++NN IGVPLTL R+ F + ELG +H GEI + T L Sbjct: 123 AAILQQTAKNADEVLFTAGNFNNDIGVPLTLLRLTDQHRFAVIELGANHAGEIAYTTQLA 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +A++ +APAHL+ F ++ +A AK EI++GL + G +N D ++ + + Sbjct: 183 RPDVALVNNVAPAHLAGFGSLQGVAKAKGEIYQGLTENGIAVINQDCNYLPMWQQNIAQH 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 IK AD R + + + +E+ +G H N L + Sbjct: 243 PIKR--FSLTHSEADIYARAIQHTNIGFSFVLCTPQGEIEIELPYLGLHNVSNALAAASL 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L A +D K L++ +GR TL+D++YNAN S+ + +S Sbjct: 301 AIALGATLDDVKKGLALGKRVKGRLFPIEV---NSQLTLLDDTYNANVDSL---KAAISV 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + ++ V+GDM E+GE ++ H +AE N+ V G + + + Sbjct: 355 LYSAPQQVKVLVVGDMAELGESTEQCHRQVAEAALNANLDQVMSFGQYSRVISQ----TC 410 Query: 423 HVHYSETMDGLFLFIQSSL----VDGDV--VVVKSSNSCGFYRLINLLL 465 + + L +Q G ++VK S S ++I+ Sbjct: 411 GGKHYQDKAELIADLQQYAAQQMKAGKTILILVKGSRSMRMEQVIDSFK 459 >gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 509 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 132/514 (25%), Positives = 208/514 (40%), Gaps = 58/514 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + D+ G G P V G + DSR + F A+ G DGHDF Sbjct: 1 MIPL-SIGDIAAITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94 A+++GA V+ + +P V V+GA Sbjct: 60 KAIEQGAVAVLAARP-------VGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGA 112 Query: 95 LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L+ LA R I+ +TGS GKT+TK++L + +T A GS+NN +G+P Sbjct: 113 LSDLAREVTSRLAAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLP 172 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R F + E+ +G IR LT + P + V+ + AHL F E IA AK Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232 Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 E+ E L G LN DD F + ++ A + + ++ +A + + Sbjct: 233 GELIEALPAAADGGVAVLNADDPFVSSMAPRTQAKVVYYSANRPQAADAQYYATDIELDD 292 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + Q + + + V+ A+ A ++ + Sbjct: 293 VARPSFTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPAVVARALSGHQTSSA 352 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386 R + T+ID+SYNANP SM AAI+ L+ + + R IAVLG+M E+G + Sbjct: 353 HRMDVRTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAV 412 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLV- 442 H L VLS Y++ ++ G A+ +A I ++ +++ L Sbjct: 413 EAHRILGSVLSKYHVDYLVAVGEGAHTVAMVEAAHAHGIQTELCPDIEAATAAVENILRV 472 Query: 443 ------------DGDVVVVKSSNSCGFYRLINLL 464 DVV+VKSSN+ +R+ L Sbjct: 473 APAGVEDWSARAAKDVVLVKSSNAQRLWRVAEQL 506 >gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] Length = 453 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 207/471 (43%), Gaps = 21/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ + L + + IG + + D+R + F A+KG +D HDF Sbjct: 1 MIPV-SLLVLAEILSAELIG--ADSQIIEVKTDTRKVTAGCLFVALKGERFDAHDFAAA- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V+ +L P V D AL +LA R + A ++++TGS GKT Sbjct: 57 ----AVAAGAGALLVSQRLALDAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS + G++NN IGVPLTL R+ DF + ELG +H+GEI + + Sbjct: 113 SVKEMTAAILSECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTSA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A+I +A AHL F + +A AK EIF GL G +N D++ + ++ Sbjct: 173 LARPQAALINNLAAAHLEGFGSLAGVAQAKGEIFTGLPTDGVAIINADNNDWPHWQS-ML 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S + +F + + + ++ S E+V G H N L Sbjct: 232 DGKTVWCFSPQATAGVEFFASEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + + LS GR A N L+D+SYNAN SM A VL Sbjct: 292 ALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAAN---KLLLDDSYNANVGSMTTAAQVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G +Q H + E I V G L A Sbjct: 349 AEMP----GYRVMVVGDMDELGAEAQECHRQVGEAARRAGIDKVISVGGLSRVLSVA--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469 S + + + + + L + +V V++K S +++ L E+ P Sbjct: 402 SGNGEHYQDKAAVIARVAELLAEHEVMTVLIKGSRRAAMEQVVCALQEKTP 452 >gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella melaninogenica D18] gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella melaninogenica D18] Length = 440 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 185/442 (41%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +DG+ F A++KG +++ A G VD Sbjct: 16 VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDE--RYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ L+ + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRK 262 K E+++ L+ G + + L + I ++G+ + AD Sbjct: 194 KGELYDFLKAHGCLLF--LNESNPDLTEMAEQRAFDRIITYGQDETADVQGYVVSCAPCL 251 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S Q EV H IG + NML + I AL + P Sbjct: 252 KFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYVP 311 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 LI ++YNANP+SM AAI + + +A+LGDM E+G Sbjct: 312 ----HNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFQLMEVENK---MAILGDMRELG 364 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + S H + E+L +I +VWL G + + +D + I Sbjct: 365 DASAEEHQKVVELLKATDIRNVWLVGEEFGKTQTDFLK------FRDIDEVKKEIALHRP 418 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + +++K SN + L LL Sbjct: 419 EDHYILIKGSNGIKLFELPALL 440 >gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] Length = 471 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 116/473 (24%), Positives = 183/473 (38%), Gaps = 19/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + I P V G + DSR + P F A G DGHDF Sbjct: 1 MIAL-SLAEIADVVGGQTHDIPDPSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +V V + + +P V DV AL LA + T++A+TGS G Sbjct: 60 -------AVVEAGAAAVLASRPVGVPAIVVPDVQAALGALARHVVRKLGTTLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + F + E+G +G IR+L Sbjct: 113 KTSTKDLVAQVLRRKAPTVFTPGSLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P I ++ + AH+ F G E+IA AK E+ E L + + L Sbjct: 173 TGLTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPSAEEG-GAAILNADDPLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG+S AD + +L S Y Sbjct: 232 MASRTKARVILFGESGEADVRAENVTLTDAGQ-PAFRLHTPSGASDVTMRLYGEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + A ++ R T+++++YNANP S + Sbjct: 291 LAAAAVAHELGMSVSEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPES--MRAA 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414 + + + R AVLG M E+G+ + + H + + N+ + G L Sbjct: 349 LRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 408 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LL+ Sbjct: 409 AYNEGSWGEESVHVSDAQAAIDLLRSQLRPGDVVLVKASRSVGLESVAQALLD 461 >gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella melaninogenica ATCC 25845] gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella melaninogenica ATCC 25845] Length = 469 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 115/442 (26%), Positives = 184/442 (41%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +DG+ F A++KG +++ A G VD Sbjct: 45 VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDE--RYILVD 102 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ L+ + +YNN +GV Sbjct: 103 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 162 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 163 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 222 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRK 262 K E+++ L+ G + + L + I ++G+ + AD Sbjct: 223 KGELYDFLKAHGCLLF--LNESNPDLTEMAEQRAFDRIITYGQDETADVQGYVVSCAPCL 280 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S EV H IG + NML + I AL + P Sbjct: 281 KFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYVP 340 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 LI ++YNANP+SM AAI + + +A+LGDM E+G Sbjct: 341 ----HNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFQLMEVENK---MAILGDMRELG 393 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + S H + E+L +I +VWL G + + +D + I Sbjct: 394 DASAEEHQKVVELLKATDIRNVWLVGEEFGKTQTDFRK------FRDIDEVKKEIALHRP 447 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + +++K SN + L LL Sbjct: 448 EDHYILIKGSNGIKLFELPALL 469 >gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] Length = 454 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 203/465 (43%), Gaps = 29/465 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQ--GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T L++ + S+ + V+ I D+R + P E F A++G +DGH+F+ A+ Sbjct: 6 TLSQLVEILSASSVNLSASALTKVSKSIQTDTRILQPGEVFVALRGEKFDGHEFVAMAIV 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA +V+ + PV V D L A ++ R +I +TGSVGKTTT Sbjct: 66 KGAIAAIVDYAYENPV----FPVLQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ L++ + + G++NN IGVP TL + + DF + E+ M G+I LT + Sbjct: 122 KELIAAVLATKGQVHKTYGNFNNEIGVPKTLLELGAEHDFAVIEMAMRGRGQIAELTQIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT + AH+ S E IA AK E+ + LNYD K Sbjct: 182 RPTIGVITNVGTAHIELLSSEEAIAEAKCELLAEMPNDSVAILNYDSPLLMETAKKFWQG 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + G + ++ + + G H A N L L + Sbjct: 242 KVISYGFSGGD------------IQGKLIDNETVEVAGIGLPLPLPGRHNATNFLAALAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L D + R + ++DE+YNA P +M AA+ +L+ Sbjct: 290 AKVLEIDWQSLQAG----VIVNMPNGRSQRFTLPNDVIILDETYNAAPEAMLAALQLLAD 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDALPR 420 I + IAVLG M E+GE SQ H + E++ + + + + ++ + Sbjct: 346 IPGKRK---IAVLGVMKELGERSQQLHQQVGEMVQKLNLDGLLLLVDSKDAEFIANSA-K 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I T L +++ + GD ++ K+++S G R++N L Sbjct: 402 GIPCECFATHADLIARLKTFMQAGDRLLFKAAHSVGLDRVVNQLR 446 >gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella multiformis DSM 16608] gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella multiformis DSM 16608] Length = 504 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 188/440 (42%), Gaps = 22/440 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSRS F A+KG +DG+ F A+QKG VV+ A G VD Sbjct: 82 VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAG--DARFILVD 139 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA A R R +I ITG+ GKTT+KE+++ LS +A +YNN +GV Sbjct: 140 DALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNNDVGV 199 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + D + E+G SH G+I L V P +IT + AHL F E + Sbjct: 200 PRTLLGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLITNVGRAHLQGFGSFEGVKRT 259 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ G + + L + I ++G+ AD Q + Sbjct: 260 KGELYDFLKAHGGLLF--LNESNADLTEMAEQREFDRIVTYGQDSTADVQGQVVSCAPFL 317 Query: 270 SWMEVQLQGKSMEVVHHGIGY-----HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + L + + + NML + + AL + P+ Sbjct: 318 KFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVTAQQVNHALENYIPRN 377 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + A N LI ++YNANP+SM AAI + + +A+LGDM E+GE Sbjct: 378 NRSQLTETAHN----RLIVDAYNANPSSMSAAIENFRLMQVENK---MAILGDMRELGEA 430 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S H + L I VWL G + A + ++ + I+ +G Sbjct: 431 SGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRK------FRDVEEVKAEIERRRPEG 484 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K SN + L LL Sbjct: 485 HYILIKGSNGIKLFELPALL 504 >gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Colwellia psychrerythraea 34H] gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Colwellia psychrerythraea 34H] Length = 513 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 131/494 (26%), Positives = 209/494 (42%), Gaps = 36/494 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQE----AFFAIKGP 49 M + + L++ G I + ++ + IDSR+I AF A+KGP Sbjct: 1 MITI-SLTTLVKVTDGELIVPAIQTALSLDELVIDDLVIDSRAIKEHSDKCSAFLALKGP 59 Query: 50 HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 ++DGH F +++G L++V+ + A V D AL K+A + Sbjct: 60 NFDGHRFAEQVIKQGCQLLIVDHHLSAV---TDTAQLIVSDTRIALGKIAAFVKKEVAPK 116 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 + ITGS GKTT KEM+ LS + K A G++NN IGVPLTL R+ DF + E+G Sbjct: 117 TVGITGSSGKTTVKEMVAAILSRLGKVLATNGNFNNDIGVPLTLLRLDNSHDFAVIEMGA 176 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H+GEI + T L +P +AVI IA AHL F + +A AK EIF GL + G N D Sbjct: 177 NHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDLCGVARAKGEIFSGLGENGVALYNKDT 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288 + + L KT+ +F A+ K +Q + S + Sbjct: 237 KYTSKWQ---WRLTDKTVRTFSCVNKANCYSEKVSLDKNGCASFTLQSEQGSCVMTLTVP 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK--EGRGKRYRCALNQGFFTLIDESY 346 G H N + I A ++ L+ P + LID+SY Sbjct: 294 GKHNVCNAVAAAAIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGCNVKLIDDSY 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NAN S +Q+ G+++ +LGDM E+G ++S+H ++ ++ + Sbjct: 354 NANLESA----KAAAQLLSSYPGKQLLILGDMGELGSEARSYHQEVGGFAKHLQLNTLLS 409 Query: 407 SGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL-------VDGDVVVVKSSNSC 455 G + DA + H + L + + L ++VK S S Sbjct: 410 LGVLSQSASDAFAKDNHKNDQSQHFNQRADLMTHLFTMLSQQLSVGQQDIAILVKGSRSA 469 Query: 456 GFYRLINLLLEEFP 469 ++ +++ F Sbjct: 470 HMEHVVTEIIDWFE 483 >gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] Length = 482 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 188/467 (40%), Gaps = 20/467 (4%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 P G++IDSR + P F A G DG+DF L A++ GAG VV+ D Sbjct: 13 TGARLAAGDPDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRD 72 Query: 74 MVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + V DD L +LA R R + T+I +TGS+GKTTTK++L Sbjct: 73 PEDEVVAMARDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAAC 132 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS + +A G+YNN IG+PLT+ P D + E+GM+ GEI LT +P +I Sbjct: 133 LSKRYRVHATAGNYNNLIGLPLTILSAPADTQMLVLEMGMNDFGEISRLTACAQPTFGII 192 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLE--------KTGTIFLNYDDSFFELLKAKSHA 241 T + +H+ E IA AKAEI EG+ + L+ +D F + + Sbjct: 193 TKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYIIERYAR 252 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + G S + D + + H ++ L Sbjct: 253 PAGIDVVLAGTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPGAQ-SVPNALF 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ A + F E G+R + +ID+SYNA+P SM A + +L Sbjct: 312 AAAVAHRLGVPAFEIDEAFASLEMTGRRAQVRHAACGARVIDDSYNASPESMAAGLDLLG 371 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP- 419 + G RIAVLG+M EMG+ + H + + G + A Sbjct: 372 SLP--CSGTRIAVLGEMGEMGDEAPRLHALTGAYAAAKRPGLLICVGGELADEMAAAARL 429 Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + D L L D+V+VK S G R + Sbjct: 430 MGMDEGDVQVVPSCDVLIKRFAGVLGVRDLVLVKGSRFVGLDRFVEE 476 >gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] Length = 468 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 207/472 (43%), Gaps = 27/472 (5%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L++A QG+ P+ + I DSR +AF A+KG +D HDF+ + K Sbjct: 14 WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDK 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V + L + V D AL +L R + + +IA+TGS GKTTT Sbjct: 74 GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + LV Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A I + AHL F G E I AK+EI+ + K GT + D F + ++ HA+ Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG+ D + ++ + + EV G H QN Sbjct: 246 QTTRVLSFGE--GGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D + L + +GR ++ ID++YNANP SM+AA VL+ Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGRLNF----ISHKQHLFIDDTYNANPTSMRAAGEVLA- 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 G ++ V GD+ E+G+ + H L L +I+ V G A + Sbjct: 359 ---QQSGIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFVVTIGEFAPAALEGARSTR 415 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 + T F+ S + + K S L+ L+E+ Sbjct: 416 YGKKMQAFLTQAQALPFLMSLVETHQPQSMSFLFKGSRYTHMETLMADLMEK 467 >gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] Length = 453 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V+ +S DSR I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAIALLVQRELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F ++ + AK EI++GL+ +N D + + KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + V +G H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + + L+ +GR + + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452 >gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 458 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 218/470 (46%), Gaps = 20/470 (4%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M LW + + + G G SIDSR+I P E FFA+KG DGHD++ Sbjct: 1 MKLALWRIAEFIHGTGDYRAG----AEALGYSIDSRTIKPGELFFAVKGERLDGHDYVQA 56 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A+ +GA VV+ + A + DD L AL++LA R ++ +TGS GK Sbjct: 57 ALDRGAVAAVVSREFPARFNGTR-NLLVADDPLLALHRLAEMVRSLWHHPVVGVTGSAGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE + L+S K G+ NNH G+PL L ++ + + + E+GMSH GEI L Sbjct: 116 TTTKECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALA 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L +P+ V+T +AP HL NF I IA AK E+ L + G LN DD F Sbjct: 176 KLAQPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRGGCAVLNADDEFVSQFGRDF 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H + FG + ADF+ + + S +++ + K IG H N L Sbjct: 236 HGTVLM----FGVKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + +++AI +L P + RG+ A T++++ YN+NP ++ A + Sbjct: 292 AVAVGVHHGIAIESAIASLKTLKPADKRGEVVEIAG----ATVVNDCYNSNPKALNAMVD 347 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+++ RI + G+M E+G + H D + + + H+ A+ + Sbjct: 348 ALAKMPAQR---RIVIAGEMLELGPEGEHLHRDSGKHMKGI-VDHLVGVRGLAQAMVEGA 403 Query: 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + T + ++ +++ GD V++K+S R + E+ Sbjct: 404 KSAGVEAEFVATPEEAGDWLAANIRPGDAVLLKASRGVKLERALERWKEK 453 >gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius sp. TM1035] gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius sp. TM1035] Length = 478 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 173/475 (36%), Positives = 246/475 (51%), Gaps = 18/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LW+ + + A QG G+SID+R++ P + F A+ DGH+F+ A Sbjct: 1 MS-LWSAKEAVAATQGR---STADWQATGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V+ + P+ V+DV L L AAR RS+A ++A+TGSVGKT Sbjct: 56 LAKGAAAALVSR--IPEGLPAEAPLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +T+A SYNNH GVPLTLARMPVD +F + E+GM+H GEI L Sbjct: 114 STKEMLRDVLGHQGRTHAAEASYNNHWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLAC 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+AVITT+A AHL F I+ IA KA IFEGLE G +N D + +L+AK+ Sbjct: 174 MARPHVAVITTVAAAHLEAFENIDGIAKEKASIFEGLEPGGVAVINADIATTPILRAKA- 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I SFG ++ A +L + + + + G H A N L L Sbjct: 233 AQHAARILSFGTARGAHHRLLNVELHDHVTVGHARAWRSPLVYKVGVPGRHFAMNALAVL 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLIDESYNANPASMKAA 356 + +L D A+ L+ + P GRG R + LID+++NANP SM AA Sbjct: 293 AVAQVLGCDRAVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAA 352 Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P GRRIA+LGDM E+G + H LA++ + I+ + G Sbjct: 353 LEVLAAAHPRDGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHCVGPR 412 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + AL D LP + + + + L + GDVV+VK S ++ L Sbjct: 413 MRALWDILPEARRGRWVASAEELAAQAHRLIDAGDVVLVKGSKGSRVSLVVEALR 467 >gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] Length = 497 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 136/500 (27%), Positives = 213/500 (42%), Gaps = 50/500 (10%) Query: 4 LWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 + +LL +Q I + + DSR + P F A+ G DGH F Sbjct: 1 MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRF 60 Query: 57 ILHAVQKGAGLVVVNTDM-------------------------VASIGSLSIPVFGVDDV 91 + V +GA +V+ + +A++ + + VDD Sbjct: 61 LADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDP 120 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L AL ++AV R T+I ITGSVGKT+TKE++ S +T S+N+ + +P Sbjct: 121 LFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPA 180 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 TL + D + E+GM GEIRFL L RP I ++T + P+HL IE IA+AKA Sbjct: 181 TLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA 240 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQS 270 E+ E L G LN DD + +++ A + ++G + NAD +L Sbjct: 241 ELPESLPADGWCILNADDHRVAAMASRTAA----RVLTYGYAPNADVRLLDVVSHGLYGI 296 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + V +G+S + IG H A L + +L D D + L G R Sbjct: 297 ELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE----PGEQLRL 352 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 R Q T+ID++YNA P S AA+ VL+ +GRRIAVLG+M E+G S H Sbjct: 353 RIVPGQHGTTIIDDTYNAAPLSTIAALQVLA----ETKGRRIAVLGEMLELGAASVEGHQ 408 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDV 446 + + + G + +A + + + + + + GD Sbjct: 409 QVGAAAATM-ADVLVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDH 467 Query: 447 VVVKSSNSCGFYRLINLLLE 466 +++K S ++ L Sbjct: 468 LLIKGSRGVQMETIVAALQA 487 >gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 488 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 205/477 (42%), Gaps = 19/477 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +T ++ G ++ + DSR + A G + DGHDF+ A Sbjct: 1 MIA-FTAAEIADITNGRLDAEPGITPLS-VVTDSREATQGSLYVAKPGENADGHDFVGSA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARL--------RSKATII 111 GA L +V +++ G P V D + A+ KLA R + T+I Sbjct: 59 FAAGATLALVEHPVLSPDG-TPYPSVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVI 117 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKTTTK++L LS+ T A GSYN IGVPLT+ D + + E+G + Sbjct: 118 GITGSAGKTTTKDLLAGILSAHGTTVAPKGSYNGEIGVPLTVFTAGTDTRYLVIEMGATG 177 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +G I +L +V+P I V+ + AH F G+E IA AK E+ EGL +GT +N DD Sbjct: 178 IGHISYLVDMVKPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEGLAASGTAIINLDDER 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 ++A++ A + + G+ A L ++ L G Sbjct: 238 VAAMQARTSASVLG-FTAEGRPGAAVQALNADTNAEGNPEFDLLLPGGDTPHHVSSRLIG 296 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + + A V A ++ R T+I+++YNANP Sbjct: 297 AHHTGNLLAAAAAAWAAGVSGEDIAAALSSQAAASRWRMERTERADGVTIINDAYNANPE 356 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+AA+ L+ + R AVLG M E+GE S H + + NIS + + G Sbjct: 357 SMRAALRTLADLGQ--GRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREA 414 Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 AL ++E + + + + L GD+V+ KSSNS G L + + Sbjct: 415 RALYVSAVQEGSWGDECIFAEDAEEAYELLSAELEPGDLVLFKSSNSVGLRHLGDRI 471 >gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] Length = 472 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 164/476 (34%), Positives = 235/476 (49%), Gaps = 21/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT D A G + G + +G+SID+R+IA + F A+ DGHDF+ A Sbjct: 1 MT-LWTATDAAAATGGRTSG---EWAASGVSIDTRTIAKGDLFVALADIR-DGHDFVGMA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V + P+ V +VL AL L AAR R+ A +I ITGSVGKT Sbjct: 56 LDKGAAAALVTH--RPEGVADDAPLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L + K +A SYNNH GVPLTLARMP D +F I E+GM+H GEI L Sbjct: 114 STKEMLRTVLQAQGKIHAAEASYNNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + + A+ITT+APAHL F + EIA KA I EGL + + + Sbjct: 174 MAQLDAAMITTVAPAHLEAFGSVAEIAVEKAAITEGLNGPLIANRDIETWDV----IRDV 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A +T ++ ++ F L + + + + G + + G H A N L + Sbjct: 230 AAAAETQVTWFGAQADAFVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAV 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAA 356 + + AD+ A ++ + P GRG R L+ D+++NANP SM+A+ Sbjct: 290 AVCDAVGADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRAS 349 Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL+ P +GRRIAVLGDM E+G H D+A SL ++ V G Sbjct: 350 LEVLAATQPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPR 409 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +L D LP + E L S + GDV++VK S +++ L + Sbjct: 410 MRSLYDVLPEGQRGQWVEIAGELAGKAHSLIDAGDVILVKGSKGSKVSLIVDALRK 465 >gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 432 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 191/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++ DSR+ F A+KG ++G+ F A++ G+ +V+ + A G Sbjct: 14 TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEGDT--RYIV 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ L L +LA R + + II ITG+ GKTTTKE+++ LS +G+ NNHI Sbjct: 72 VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E I Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + + L K A G+ I + Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYL---KKIAYGLHQIAYGSEDGLYINGHVTGNSPY 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + K EV IG + N L + I + + KAL+ + P+ R Sbjct: 249 LTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM A+IS + + + +LGDM E+G+ S Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAENK---MLILGDMRELGKDSAD 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +A+ L V L G A + + + L +Q G + Sbjct: 362 EHQKIADYLEECGFKDVVLVGELFAATRHSYQS------YPDVTALIAELQREKPCGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN ++ L Sbjct: 416 LIKGSNGIKLSSVVEYL 432 >gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus australis ATCC 700641] gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus australis ATCC 700641] Length = 456 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 129/471 (27%), Positives = 204/471 (43%), Gaps = 30/471 (6%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ + + I + DSR I + F +K DGHDFI A + G Sbjct: 4 TLHEVARVLAVRNDISQFEDFDLQKPEFDSRLIGKGDLFVPLKVAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ P VDDVLGA KLA +S+ ++A+TGS GKTTTK+ Sbjct: 63 AVATLSEKEVE------GHPYLLVDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ + P Sbjct: 117 MLAQLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T I AHL F EIA K +I +G+ G + + D + L Sbjct: 177 KAAIVTLIGEAHLEFFKDRTEIAKGKLQIADGMPAGGLLLVPADPIVEDFL------PNQ 230 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + FG+ + +R K + + + + G + A N ++ + Sbjct: 231 QELVRFGEGAD----IRITKLDERKDSLTFEANFLEEAIDLPVTGKYNATNAMIASYVAL 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + F E R ++ + YNANP +M+ + S I Sbjct: 287 KEGVSEEAI---RASFKGLELTKNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIP 343 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + GR++AVL DM E+GE S H + LS + V G + L + Sbjct: 344 ANPNGRKLAVLADMKELGEQSIDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPL 403 Query: 422 IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV+Y + + L ++ SL + D +++K SNS +L+ L Sbjct: 404 GHVYYFKKTAEEDQFEDLVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 454 >gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] Length = 427 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 121/438 (27%), Positives = 202/438 (46%), Gaps = 25/438 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GI D+R I FFA+ G +++G+ F A++ GA VV++ + + Sbjct: 14 TGICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGET---IL 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D+ L L KLA R I+A+TGS GKTTTKE++ LS T A G+ NNHI Sbjct: 71 TDNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + + GI E+G +HL EI L H+ +P+ IT AHL F +E + Sbjct: 131 GVPLTLLSMTKETEIGIVEMGANHLKEIETLCHIAQPNYGYITNFGKAHLEGFGSLEGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ + K+ + + + + Y+FG + + Sbjct: 191 KGKTELYKHIVKSDGLLFVNAND-----AKQLELTKKEKRYTFG------NEGNDCEIKL 239 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ E+ + + + + IG + N+ + I +A+ + P R Sbjct: 240 LEATKELIISYQGQSINSNLIGLYNYHNIAAAIAIGQYFKVSATKVKEAIEEYIPTNNRS 299 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + T+I ++YNANP+SM AA+ Q + + I +LGDM E+GE + Sbjct: 300 QIIKQNG----HTIILDAYNANPSSMTAALDNFKQTVGNNK---ILILGDMFELGETASK 352 Query: 388 FHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H +A+ +S NI + V+L G + +K + H+H T + L ++ + Sbjct: 353 EHQAIADKISSQNIGNTVYLVGENFSKIKT---DNKHMHLCPTFEALQSNLKHQKPNNAT 409 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S R + LL Sbjct: 410 ILIKGSRGMALERTLKLL 427 >gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF [Bifidobacterium bifidum PRL2010] gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium bifidum PRL2010] Length = 513 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 149/507 (29%), Positives = 216/507 (42%), Gaps = 50/507 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M P+ T + +A+QG I DSR + F AI G D Sbjct: 1 MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLRSKAT 109 GHDF+ A + GA + +V ++ A + V D + AL LA AAR Sbjct: 60 GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRAVGTP 114 Query: 110 --IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+ Sbjct: 115 FTLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 174 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN Sbjct: 175 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 234 Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274 DD+ + + + GKS + S+ Sbjct: 235 DDAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 294 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + G + V G H N L + +L + + + LS Sbjct: 295 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 354 Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H + Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEGIG 414 Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438 E + I V G H AL AL + VH+ +D ++ Sbjct: 415 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 474 Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463 + D D VV++K S++ G L Sbjct: 475 ALAGDHDDTVVLLKGSHASGLSALAQR 501 >gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] Length = 483 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 134/487 (27%), Positives = 210/487 (43%), Gaps = 45/487 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + QA+ + + DSR + P F A+ G DGH F+ V +GA + Sbjct: 2 IRQAV--TLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAAL 59 Query: 70 VNTDM-------------------------VASIGSLSIPVFGVDDVLGALNKLAVAARL 104 V+ + +A++ + + VDD L AL ++AV R Sbjct: 60 VSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQ 119 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 T+I ITGSVGKT+TKE++ S +T S+N+ + +P TL + D + Sbjct: 120 MFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAV 179 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+GM GEIRFL L RP I ++T + P+HL IE IA+AKAE+ E L G Sbjct: 180 LEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCI 239 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEV 283 LN DD + +++ A + ++G + NAD +L + V +G+S + Sbjct: 240 LNADDHRVAAMASRTAA----RVLTYGYAPNADVRLLDVVSHGLYGIELTVGYEGQSHRL 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG H A L + +L D D + L G R R Q T+ID Sbjct: 296 TTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE----PGEQLRLRIVPGQHGTTIID 351 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++YNA P S AA+ VL+ +GRRIAVLG+M E+G S H + + Sbjct: 352 DTYNAAPLSTIAALQVLA----ETKGRRIAVLGEMLELGAASVEGHQQVGAAAATM-ADV 406 Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 + G + +A + + + + + + GD +++K S Sbjct: 407 LVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET 466 Query: 460 LINLLLE 466 ++ L Sbjct: 467 IVAALQA 473 >gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] Length = 471 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 129/476 (27%), Positives = 195/476 (40%), Gaps = 25/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + + G + I P V G + DSR P F A G DGHDF Sbjct: 1 MIAL-SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFAGERVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +V V + +P VDDV AL LA R AT++A+TGS G Sbjct: 60 -------AVVGAGAVAVLGTRPVGVPAIVVDDVQTALGALARHVVRRLGATLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T GS NN IG+PLT + F + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSFFELL 235 L P I ++ + AH+ F G E+IA AK E+ + GT LN DD + + Sbjct: 173 AGLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPSEAEGGTAILNADDPYVRAM 232 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 +++ A I FG+S AD + +L S Y Sbjct: 233 ASRTKAKVIL----FGESGEADVSAENVRLTDTGQ-PAFRLHTPSGASDVTMRLYGEHHV 287 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + A+++ R T+++++YNANP SM+A Sbjct: 288 SNALAAAAVAHELGMSADEIAVALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414 A+ L+ + R AVLG M E+G+ + + H + + N+S + G L Sbjct: 348 ALRALA--AMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREAAWL 405 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + ++S L GDVV+VK+S S G + LLE Sbjct: 406 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEGVAQALLE 461 >gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492] gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492] Length = 432 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 191/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++ DSR+ F A+KG ++G+ F A++ G+ +V+ + A G Sbjct: 14 TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDT--RYIV 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ L L +LA R + + II ITG+ GKTTTKE+++ LS +G+ NNHI Sbjct: 72 VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E I Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + + L K A G+ I + Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYL---KKIAYGLHQIAYGSEDGLYINGHVTGNSPY 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + K EV IG + N L + I + + KAL+ + P+ R Sbjct: 249 LTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM A+IS + + + +LGDM E+G+ S Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAENK---MLILGDMRELGKDSAD 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +A+ L V L G A + + + L +Q G + Sbjct: 362 EHQKIADYLEECGFKDVVLVGELFAATRHSYQS------YPDVTALIAELQREKPCGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN ++ L Sbjct: 416 LIKGSNGIKLSSVVEYL 432 >gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC7] Length = 494 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 135/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QA QG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + IP V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVKCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 A+ S F + ++ Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ + + T + ++ ++ + K L+ Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454 +L I HV G H+ A+ + + L ++ L G V+ K S Sbjct: 420 ALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRG 479 Query: 455 CGFYRLINLLLE 466 LI L Sbjct: 480 MAMESLIADLTA 491 >gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] Length = 452 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 208/463 (44%), Gaps = 25/463 (5%) Query: 12 QAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 Q ++G P G+S D+R+I F + G +DGHD++ A+ KGA + Sbjct: 6 QLLKGIITKNNPSAPLSFTGVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASL 65 Query: 70 V--NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + + S+ + + V+D L AL +A A +++ T++A+TGS GKTT K++L Sbjct: 66 WATSVPVPESLKNED-RLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDLLY 124 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L+ + Y G+YNNHIG+PLT+ MP + I E+GMS LGEI L+ L P IA Sbjct: 125 ATLAPLGSIYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIA 184 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T I +HL E IA AK EI GL+ TG +FL+ D+ + + Sbjct: 185 VVTNIGESHLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLLSHYVKEG-------V 237 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G S + + + + ++++ + A + + L + Sbjct: 238 QTVGFSSENKIVIHDLEAREDGYSFTIDEHSYDIKLIGEHNVKNAAYAVSVALHLGLSPE 297 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 R Q L++++YNA+P SMKAAI L + Sbjct: 298 QV-------ARSLERVAISKMRLEKIEGQKGALLLNDAYNASPTSMKAAIKTLKAYPNYE 350 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHV 424 + +AVLGD+ E+G ++ H +A+ ++ I+ L G + D + R +I Sbjct: 351 KK--VAVLGDIYELGIDEEALHRSVADEITE-PITTAVLVGEKGQWIADEMKRRGSNIPF 407 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +I+ L VV+ K+S +++ L E Sbjct: 408 VSFVEKEEATDYIEGLLDGKTVVLFKASRGLELESIVDKLKRE 450 >gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio ammonificans HB-1] gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio ammonificans HB-1] Length = 432 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 132/465 (28%), Positives = 192/465 (41%), Gaps = 33/465 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++G +G G G+ DSR IA E F +KG DGH FI A +G Sbjct: 1 MDAKTLAEIVKGELVG---SGRFGGVHFDSREIAKGELFIPVKG-RRDGHLFINDAFSRG 56 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + G V D L A +LA R + K T+I +TGSVGKTTTKE Sbjct: 57 AAGTLTERRVELPPGKF---QVVVRDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKE 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L L T S+NN +GV TL+ +P F + ELG + GEI LT V+P Sbjct: 114 LLGKLLGRNCYTS--KKSFNNLLGVCYTLSNLPESARFLVQELGTNSPGEIARLTKTVKP 171 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 H+AV+TT+ AH F +E I K I EG E LK A Sbjct: 172 HVAVVTTVGKAHTQGFKTLEAIKKEKLSITEGAEVAVVPV---------ELKEMCRADKC 222 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T+ G +++ W ++ ++ + +++ GY + + + Sbjct: 223 LTVGRGGTV-----EVKNWGIKGGRTLFTLKAGKEELQLESSIPGYSIVNAAAVAAAVAL 277 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + +K + F P + R TLID+ YNANP SM+ A+ VL+ Sbjct: 278 ELGIPLRELVKVVREFSPPKHRCS----VERLPNGTLIDDCYNANPVSMENAVRVLASF- 332 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G ++AVLG+M E+GE H L E+L+ I + G Sbjct: 333 ---NGPKVAVLGEMLELGEEGPKEHRKLGELLNALGIEELIAFGAQTEETVKTFK--GKG 387 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + FI G V+VK S + L+ E Sbjct: 388 FHFTNREEFIKFISEFPFRGKTVLVKGSRGNRLEEAVELIRERLK 432 >gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium bifidum S17] gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium bifidum S17] Length = 519 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 149/507 (29%), Positives = 216/507 (42%), Gaps = 50/507 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M P+ T + +A+QG I DSR + F AI G D Sbjct: 7 MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 65 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLRSKAT 109 GHDF+ A + GA + +V ++ A + V D + AL LA AAR Sbjct: 66 GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRTVGTP 120 Query: 110 --IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+ Sbjct: 121 FTLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN Sbjct: 181 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 240 Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274 DD+ + + + GKS + S+ Sbjct: 241 DDAHVATMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 300 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + G + V G H N L + +L + + + LS Sbjct: 301 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 360 Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H + Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420 Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438 E + I V G H AL AL + VH+ +D ++ Sbjct: 421 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 480 Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463 + D D VV++K S++ G L Sbjct: 481 ALAGDHDDTVVLLKGSHASGLSALAQR 507 >gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] Length = 499 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 136/491 (27%), Positives = 209/491 (42%), Gaps = 33/491 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ ++ QA+ G + DSR + F AI G DGHDF Sbjct: 7 MMPMG-LAEIEQAVHGRLVTAEGISSNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 65 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111 + +GA +V+ ++ +P VDD + AL +LA R S T+I Sbjct: 66 VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 121 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK+++ LS++ +T A +GS+NN IG+PLT ++ F + E+G +H Sbjct: 122 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT LV P IAV+ + AHL F E IA AK+EI +GL G LN +D Sbjct: 182 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 241 Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + + + + + S+ +G+ +V G Sbjct: 242 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 301 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348 H N L +V L +D L+ + FTLID+S+NA Sbjct: 302 MHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 361 Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SMKA + L + + E + AVLG M E+G ++ H + ++ + Sbjct: 362 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIA 421 Query: 407 SGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452 G DAL + V ++ +D + G VV++K S Sbjct: 422 VGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKGS 481 Query: 453 NSCGFYRLINL 463 ++ G L Sbjct: 482 HASGLSALAER 492 >gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 452 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 200/471 (42%), Gaps = 23/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L+ + IG + +S D+R+I F A+ G +D HDF A Sbjct: 1 MITLM-LSQLVDVLDAQLIGD--DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA ++V+ + + +P V+D AL KL + +AITGS GKT Sbjct: 58 ASAGASALLVSKAV-----DVQVPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ ++ + G++NN IGVPLTL R + DF + ELG +H+GEI + T Sbjct: 113 TVKEMVASIMTQKGQVLYTAGNFNNDIGVPLTLLRSQPEDDFAVIELGANHVGEIAYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P +A++ +A AHL F ++ + AK EI++GL+ +N D + E + Sbjct: 173 LVNPDVAMVNNVAAAHLEGFGSMDGVKRAKGEIYQGLKPGSVAIVNLDSNGGEHWREVLS 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +KT S + E S+ +Q S +V IG H N L Sbjct: 233 DKTVKTFSLSDNSAEYKARNVTMNVNGEASF-TIQTPETSFDVKLGIIGQHNVSNALAAT 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L A + L+ + + T + + + A+ Sbjct: 292 ALSLELGATTEMIASGLANLSKV-------KGRVETVDLTDSIRLIDDSYNASVPAMKAA 344 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + +G R VLG+M E+GE S + H + E + + HV G A+ D Sbjct: 345 ADLLNSFDGVRWLVLGNMAELGEESLALHRQVGEHAAPFKFEHVLTFGADTKAISDV--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468 + +T D + FI+ L ++VK +NS G ++ L E + Sbjct: 402 -CQGMHFDTHDHMIEFIEQQLSQQTGPHTLLVKGANSAGMSKIAAALKEMY 451 >gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] Length = 425 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 117/436 (26%), Positives = 189/436 (43%), Gaps = 27/436 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I FFA+KG +++G+ + A++KGA VV+ A VD Sbjct: 16 VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYAINN----KFILVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +L R + KA +I +TGS GKTTTKE++ + KT A +G+ NNHIGV Sbjct: 72 DVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D + I E+G +HL EI FL+ L P IT AHL F E + Sbjct: 132 PLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAEPDYGYITNFGKAHLEGFGSTEGVIQG 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+++ L L A K K + +K Sbjct: 192 KSELYKYLTTNQKHV---------FLNADDPIQESKLGTYVKKIGFSSNNSNYFKIELLS 242 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + V ++ K + + +G + N + + + +A+ + P R + Sbjct: 243 ADPFVTIKVKDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLIKEAIEGYTPANNRSQI 302 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +I ++YNANP SM AA+ + I +I LGDM E+G +++ H Sbjct: 303 LEQNG----YKIILDAYNANPTSMAAALDNFNGIKAA---HKIVFLGDMFELGTTAETEH 355 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVV 448 +A+ N + +L G + K T L +++ L ++ Sbjct: 356 QHIADKACKMNFTTTFLVGENFAKAK------TEATQLATFKDLEEYLKKHPLQPNSSLL 409 Query: 449 VKSSNSCGFYRLINLL 464 +K S R++++L Sbjct: 410 IKGSRGMALERILDIL 425 >gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga algicola DSM 14237] gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga algicola DSM 14237] Length = 436 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 116/440 (26%), Positives = 196/440 (44%), Gaps = 26/440 (5%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + IS D+R + FFA+KG ++DG+ + A++ GA V++ + A + Sbjct: 23 LKFSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDAT--- 79 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V DVL L +LA R K +IA+TGS GKTTTKE++ L + KT A +G+ N Sbjct: 80 -ILVPDVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVGNLN 138 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIGVPLTL + D + I E+G +H EI FL ++ P IT AHL F E Sbjct: 139 NHIGVPLTLLAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGYITNFGKAHLEGFGSFE 198 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + K+E+++ L+K D + A + + D + Sbjct: 199 GVIKGKSELYDYLQKDEKPIFFNADDELQ-------ANKLSNYINKFGFSETDSHYYNIQ 251 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++++ + + + G + + + +D + + P Sbjct: 252 LKEADPFVQIIFENQEIVSNLIGAYNFINCCA--AIIMGKYFNVSIDQIKNGIERYIPSN 309 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R L Q +I ++YNANP+SMKAA+ S++ + I LGDM E+G Sbjct: 310 NRS----QVLTQNTNEIILDAYNANPSSMKAALDNFSKLKTTKK---IVFLGDMFELGST 362 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H +AE+ S N + +L G + L ++ + L +F++++ Sbjct: 363 APEEHQHIAELTSALNFTEAFLIGENFDVTTSDLKT------FKSFNELAVFLKTNTFKD 416 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K S R+++LL Sbjct: 417 ASILIKGSRGMALERVLDLL 436 >gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] Length = 493 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 136/491 (27%), Positives = 209/491 (42%), Gaps = 33/491 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ ++ QA+ G + DSR + F AI G DGHDF Sbjct: 1 MMPMG-LAEIEQAVHGRLVTAEGISSNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111 + +GA +V+ ++ +P VDD + AL +LA R S T+I Sbjct: 60 VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 115 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK+++ LS++ +T A +GS+NN IG+PLT ++ F + E+G +H Sbjct: 116 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 175 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT LV P IAV+ + AHL F E IA AK+EI +GL G LN +D Sbjct: 176 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 235 Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + + + + + S+ +G+ +V G Sbjct: 236 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348 H N L +V L +D L+ + FTLID+S+NA Sbjct: 296 MHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 355 Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NP SMKA + L + + E + AVLG M E+G ++ H + ++ + Sbjct: 356 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIA 415 Query: 407 SGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452 G DAL + V ++ +D + G VV++K S Sbjct: 416 VGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKGS 475 Query: 453 NSCGFYRLINL 463 ++ G L Sbjct: 476 HASGLSALAER 486 >gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] Length = 465 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 211/467 (45%), Gaps = 14/467 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G +G V G + DSR + A +G DGH F+ A +G Sbjct: 4 SAQWIAVAVSGRLVGN--DVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKT 120 A V+V ++ + +P V+D AL LA A + +IA+TGSVGKT Sbjct: 62 AVAVIVEHEVDEA-----VPQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++L +S T A S+NN +G+PLT+ + E+G S G I +LT Sbjct: 117 TTKDLLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTD 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P +A+ + AH+ F G E +A+AKAE+ +G G + LN DD E + + Sbjct: 177 IVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLAT 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I+ S + + + + + S+ V +G++ + +H+A + Sbjct: 237 GRVIRFSASGNERADVVARDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAAAA 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +++ A R + ++ TLID+SYNAN SM+A I+ L Sbjct: 297 GALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAAL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + I + +RIAVLG+M E+GE SQS H + +++ + + G + P Sbjct: 357 ASI--GRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPE 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + DG VV+VK S +++ ++L E+ Sbjct: 415 VPNREVAADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREK 461 >gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] Length = 453 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + +G+ ++ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLVGV--DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 LTGGAVALLVQRELEA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + + + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL + +N D + E KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + ++V IG H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + L+ +GR + + LID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + G V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] Length = 475 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 116/467 (24%), Positives = 190/467 (40%), Gaps = 18/467 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + +++ + I G ++ +S DSRS P + F AIKG +D HDF+ Sbjct: 6 DAMFSLREAAALISGATVIGDEYVTFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + V++ +P V D L LA R + ++A+TGS GKTT Sbjct: 66 ARNVTAVLITRTPQDWT----VPALKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTT 121 Query: 122 TKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ A G++NN IG+PLTL R+ + ELGM+H GE L Sbjct: 122 VKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETLEL 181 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +AV+ H + +E +A A + L G DD++ + + Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTPEGVAVFPADDAYASIWR-- 239 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I F + K + + + +EV +G H A N L Sbjct: 240 -VAATGSRIMDFALNSAERITEAAVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALA 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAI 357 +D + L F +GR + + T+ID++YNANP SM+AAI Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAI 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + R+ V+GDM E+G+ +FH ++ I ++ G A Sbjct: 359 DVLASRAA----PRVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRDACTA 414 Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 H+ + L +Q + ++VK S R+++ Sbjct: 415 Y--GASAHHVADIGTLVAQLQQAGFGSTATLLVKGSRFMQMERVVDA 459 >gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii SDF] gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii] Length = 466 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 203/470 (43%), Gaps = 25/470 (5%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W L QA QG+ +PQ + I DSR +AF A+KG +D H+F+ Sbjct: 14 WIAQQLQQATQGYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAAN 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122 G + +V + A I V D AL +L R ++ + +IA+TGS GKTTT Sbjct: 74 GCQVAIVERPIDAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG +H GEI + + +V Sbjct: 129 KEMLGSILSRLAPTLINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +PH+A I I AHL F G + I AK+EI+ + G + D F ++ A Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AA 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I SFG D + + + + ++ S V G H QN + Sbjct: 246 KSHQIMSFG--AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ +K L +GR + + ID++YNANP SM +Q Sbjct: 304 ALALGVSLEDIVKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQ 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421 + G ++ V+GD+ E+G+ S H DL L+ + H+ G A + S Sbjct: 356 VLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIVAVGQFASAALEGAGLHS 415 Query: 422 IHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 + +T F+ + + + K S L+ L+E+ Sbjct: 416 TKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter sp. FB24] gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter sp. FB24] Length = 491 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 133/479 (27%), Positives = 209/479 (43%), Gaps = 20/479 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +T ++ + G P + + DSR + A G DGHDFI A Sbjct: 1 MIA-FTAAEIAEITDGRL-AADPTITPSAVVTDSREATEGSLYVAKPGESADGHDFIGAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---------AARLRSKATII 111 ++GA L +V + G+ P V D + A+ LA A ++ T+I Sbjct: 59 FERGAVLALVEREGPDGAGAP-YPAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFTVI 117 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGS GKTTTK++L LS+ T + GSYN +GVPLT+ + D + + E+G + Sbjct: 118 GITGSAGKTTTKDLLAGILSAEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGATG 177 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +G IR+L +VRP I V+ I AH F G++ IA AK E+ E L +GT +N DD Sbjct: 178 IGHIRYLADMVRPSIGVVLGIGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDDGR 237 Query: 232 FELLKAKSHAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + +++ A G + A + + E+ G++ Sbjct: 238 VAAMTSRTTANVLGFSAQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRSRL 297 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + + A V A S+ R T+I+++YNAN Sbjct: 298 IGAHHVTNLLAAAGAAYAAGVTGERIAASLSTQTAASRWRMERTERPDGVTIINDAYNAN 357 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P SM+AA+ L+ + R AVLG M E+G+ S H+ + + NIS + + G Sbjct: 358 PESMRAALRTLADL--GRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNISRLVVVGR 415 Query: 410 HVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +L + ++E+ D + +Q L GD+V+ KSSNS G L + + Sbjct: 416 EARSLYVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVLFKSSNSVGLRHLGDRI 474 >gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1] gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1] Length = 440 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 133/464 (28%), Positives = 219/464 (47%), Gaps = 27/464 (5%) Query: 5 WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++L+ ++G + + IDSR F +KG DGHDFI A++K Sbjct: 1 MKIKEILEIVKGRPLKLRDADKEIKRFIIDSRKAQKDSFFVPLKGSKADGHDFIDDALKK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G+ + + + G VDD L AL ++ + R + K + ITG+ GKTTTK Sbjct: 61 GSSGYLTSIETDYKNG------ILVDDTLKALTEIGIFKRKKLK-KAVGITGTSGKTTTK 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L LS I + YA G+YNN IG+PLTL+ +P + + G+FELG S G+I L + + Sbjct: 114 EILRFLLSDIFRVYATEGNYNNEIGLPLTLSNIPENTEVGVFELGASKRGDISKLVSISK 173 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + V+T++ H+ F E + K EIF+G + S + Sbjct: 174 PEVRVLTSVGHGHIEGFGSFEGVVQGKGEIFDG----------GEISVLPEDLKIYYMDR 223 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +K +FG S AD ++ + E + V + + + + N+ L ++ Sbjct: 224 LKKYVTFGISDYADIKISEINITPEGTAGTVSYKNDKIRITVPVYSRALFNNIAAALSVL 283 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + + L F EGRG L +G T+ID+SYNANP S+K AI LS I Sbjct: 284 YALDINPVRSAEKLRDFSLPEGRG----KVLRKGSLTVIDDSYNANPLSVKNAIETLSGI 339 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 R+ +LGDM E+G+LS+ HI + + + +I + L G + + Sbjct: 340 PS----FRVLILGDMLELGDLSEQMHIKVGKEILSSDIDLILLYGRETYHTYTVIKDKKN 395 Query: 424 VHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLE 466 ++ + + L+ + S+ D + V++VK S +I +L+ Sbjct: 396 SYHFDDKEKLYRKLMDSIKDKECVLLVKGSRGMRMEDIIEKVLQ 439 >gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 20_3] gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 20_3] Length = 427 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 33/447 (7%) Query: 24 QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 F++ I+ DSR+ FFA+KG +DG+ + A+ G V++ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD+VL L +LA R II ITG+ GKTTTKE+L LS+ G Sbjct: 64 GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NNHIGVPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257 E + K E+++ + ++ ++ + + ++ G+ + D Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L + QGK V H IG + N+L + + + +A+ Sbjct: 244 PFL----------VFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + + P R + + N+ LI ++YNANP+SMK A+ + + +LGD Sbjct: 294 AAYEPTNNRSQFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S H ++ E + V+L G H + T + + + Sbjct: 347 MRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMVEEL 400 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + G +++K S+S G +L ++L Sbjct: 401 RKQPLKGYHILIKGSHSMGLEKLADIL 427 >gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] Length = 460 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 202/473 (42%), Gaps = 31/473 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + IG + +S D+R+I + F A+KG +D HDF A + GA Sbjct: 6 LSQLASVLNAELIG--ADVSIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122 ++V+ + + +P V D AL + + + +A+TGS GKTT Sbjct: 64 ALLVSKPL-----PVELPQLVVSDTRIALGMMGAWLKAQMTEKYGLQTVALTGSCGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM L++ + A G++NN IG PLTL R+ + + + ELG +H EI + T+LV Sbjct: 119 KEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEISYTTNLV 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P++A+I IA AHL F ++ +A AK EIFEGL + GT +N + + L + Sbjct: 179 KPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQPLLADH 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + T + AD+ + K ++ + + N+ L Sbjct: 239 QVLTFSTDS--HQADYFAEEIKITTQGLACFTMCTPIGKIDI--NLALAGIHNVSNALAA 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ + T + R LID++YNA+ A++KAAI VL+ Sbjct: 295 AALTVSLGATLADVKAGLETMANVKGRLDITEPCAGLRLIDDTYNASVAAVKAAIDVLAS 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 EG+R + GDM E+GE S + H ++ E + V G + + Sbjct: 355 F----EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMTFGHSSAVVSEL----N 406 Query: 423 HVHYSETMDGLFLFIQSSL-----VDGD---VVVVKSSNSCGFYRLINLLLEE 467 + L L ++ L V+VK + S +I L E+ Sbjct: 407 QGQHFSDKGALILSLKQQLQQYSRQPDAETVTVLVKGARSSKMEDVIAALQED 459 >gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum NCIMB 41171] gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum NCIMB 41171] Length = 513 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 150/507 (29%), Positives = 218/507 (42%), Gaps = 50/507 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M P+ T + +A+QG I DSR + F AI G D Sbjct: 1 MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLR--SK 107 GHDF+ A + GA + +V ++ A + V D + AL LA AAR + Sbjct: 60 GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRAAGTP 114 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T+I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+ Sbjct: 115 FTLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 174 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN Sbjct: 175 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 234 Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274 DD+ + + + GKS + S+ Sbjct: 235 DDAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 294 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + G + V G H N L + +L + + + LS Sbjct: 295 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 354 Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H + Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 414 Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438 E + I V G H AL AL + VH+ +D ++ Sbjct: 415 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 474 Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463 + D D VV++K S++ G L Sbjct: 475 ALAGDHDDTVVLLKGSHASGLSALAQR 501 >gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] Length = 453 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + +G ++ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLVG--ADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVQRELEA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + + + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL + +N D + E KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + ++V IG H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + L+ +GR + + LID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + G V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] Length = 426 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 104/437 (23%), Positives = 190/437 (43%), Gaps = 30/437 (6%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + + +DSR I FFAI +G+ +I +++GA LV+ + V Sbjct: 19 EILKVVMDSRKIEKDSLFFAI----NNGNKYIDEVLERGATLVIAD-----DYSGDDSRV 69 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D + A+ LA R +IAITGS GKTTTK+M+ LS + G+YNN Sbjct: 70 IVVEDTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQKYRCKKTEGNYNN 129 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+P T+ ++ + + E+GMS GEI L + +P A+IT I +HL E Sbjct: 130 HIGLPFTILQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKTREN 189 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + AK EI + + ++ + L + + G KN ++ +K Sbjct: 190 VFKAKGEIIKYVVSENL-----------IIFGDDYYLKNLSGITVGYEKNCKKRIENFKD 238 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E ++ + G H N M + + L + K + Sbjct: 239 TDEGIEFSLEGN----NYKINLNGKHNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTPM 294 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + +G I+++YNA+P SM+ ++ ++ + + +IAVLGDM E+G+ Sbjct: 295 RFQ----KIVKGETLYINDAYNASPISMRYSLETFDKL--YNDRTKIAVLGDMLELGDKE 348 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 FH ++ + + +++ G + + + ++ + S + + I+ S+ Sbjct: 349 IEFHREIIKKALDIKVDRIYIYGERMQKAYELMKQNKKIITSLDKNFIRESIKESIKGSK 408 Query: 446 VVVVKSSNSCGFYRLIN 462 +++K S +I Sbjct: 409 AILLKGSRGMKMEEIIE 425 >gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium chlorochromatii CaD3] gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 476 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 117/472 (24%), Positives = 197/472 (41%), Gaps = 16/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M +DL +A+ + IDSR ++ F A+ G DGH + Sbjct: 1 MKATLQRNDL-EAVGELVFHGEAPPSFELAEPHVVIDSREVSEGGLFVALHGERTDGHRY 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIA 112 + Q GA +VN + G P V+D + L LAV R I+A Sbjct: 60 VNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGFLVVEDTVAGLQHLAVRYRNTFSIPIVA 119 Query: 113 ITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 I GS GKTTTKEM+ S G+ NNH+GVPLTL +M + + E+G++H Sbjct: 120 IGGSNGKTTTKEMVAAVLASDSSAVSMSQGNRNNHLGVPLTLLQMRHSTERAVVEVGINH 179 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ L LV P ++T I HL ++ +A A+ ++++ + G D Sbjct: 180 PNEMAMLAELVAPTHLLLTNIGHEHLEFLGDLDGVAKAETQLYDYARQHGATAFINADD- 238 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 E L+A + + + YS ++ ++ + + + E + + Sbjct: 239 -ERLRAAAEGMPFRIDYSLHEAVDSLVWAEDVTVERDGRLSFLLVTKGRSEQERLRLHFT 297 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANP 350 N+L + ++ + + R + G L++++YNAN Sbjct: 298 GRHNVLNAVAAATVGLQFGISLHHICEGLAGLQPAPGWKRLEVVEVGGVRLLNDTYNANS 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 SM+ AI L + GRRIAV+GDM E+G+ ++ H +A + ++ ++ G Sbjct: 358 DSMRRAIDALCDMP--CNGRRIAVVGDMLELGDAAEVEHQAVAHYIQRSLVTKLFTFGTQ 415 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 A+ P + YSE L + L +GDVV+VK S +++ Sbjct: 416 AAAICRHAPELCYGSYSE-HSALLDDLLHVLSEGDVVLVKGSRGMRLELIVD 466 >gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J1-208] Length = 418 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 119/428 (27%), Positives = 194/428 (45%), Gaps = 15/428 (3%) Query: 41 EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 + F G DGH+F+ A + GA D+ PV V+D L AL +LA Sbjct: 1 DLFVPFVGNVRDGHEFVNQAREMGAVATFWQKDV--PNPPTDFPVILVEDTLLALQELAA 58 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 + K +IAITGS GKTTTK+++ + + K + G++NNHIG+P T+ MP D Sbjct: 59 KYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT 118 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + E+GM+H EI L+ + +P IA+IT I AH+ EEIA AK EI G Sbjct: 119 EVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAG---- 174 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 E L + G +FGKS+ A+ + + +E + + Sbjct: 175 LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTCFITNWE-PE 232 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +E+ IG H N + + + + + AL R + Sbjct: 233 LEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNME---RSKSRLEWITTKSGAR 289 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +++++YN++P ++K + + G+ + VL DM E+G+LS H + AEVL Sbjct: 290 ILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLADMLELGDLSTKLHQESAEVLESDT 348 Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 I V+L G + A +A VH+ +T + L + S + + ++VK S G Sbjct: 349 IEKVFLYGDAMKAFGEVAEAKIGQGKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGL 408 Query: 458 YRLINLLL 465 ++ L+ Sbjct: 409 KDVVENLI 416 >gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 193/465 (41%), Gaps = 21/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + + + G P+ + G+SIDSR+I + I G +DG FI Sbjct: 5 SLDQISKMLGGEI--SDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQN 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G+ +++ + S++IP VDD AL LA A R + IIAITGS GKTT+ Sbjct: 63 AGSPAFLIDKNFKIP-KSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTS 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K ++ LS K G+ NN IG+PLT+ D D G+ E+G GEI LT++ Sbjct: 122 KNIIHSVLSEKYKVEKTHGNLNNEIGLPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +A+IT I AHL E IA AK EI EGL+ G N DD + + Sbjct: 182 RPDMAMITNIGDAHLLKLKTREGIAKAKLEILEGLKDDGIFLYNGDDEILKKVLPSYDIK 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG DF++ + + K +G H N + + I Sbjct: 242 --QKTISFGMGDKVDFKVEAREY----TSTSTNFSYKDENYSVPLLGSHQVYNGALAVLI 295 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D LS + + F ++D++Y +NP S+K + + Sbjct: 296 GKLFDLSYDQIKVGLSKSS----NNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGF 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 + + I VLGDM E+G+ + H + I++ G + A + Sbjct: 352 LDGYLNK--IVVLGDMLELGDDELNLHYKSGLDIDPKKINYCLFFGPLCKEMYRASLENF 409 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y E + L ++ + +V VK S +I + Sbjct: 410 PQDRSFYFENKNDLIDKLKLLITKSTLVFVKGSRGLHMEEVIEAI 454 >gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella disiens FB035-09AN] gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella disiens FB035-09AN] Length = 433 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 17/435 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR F A+KG ++G+ F A++KG +++ A G+ + V Sbjct: 16 ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEGND--RLILVK 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A K+A R +I ITG+ GKTT+KE+++ LS G++NN +GV Sbjct: 74 DALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PKTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNVGRAHLEGFGSFEGVKLT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ + + L + + I S+G++ + Q Sbjct: 194 KGELYDYLKANDCLLF--LNESNPDLSEMAAQRNFERIISYGQNDMVNVQGEIIDCAPFL 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++ + EV+ H +G + NML + + + AL + P R + Sbjct: 252 HFRWREVGSEWKEVMTHLVGAYNLDNMLAAIALGLHFSVAPQQICHALETYVPSNNRSQL 311 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ L+ ++YNANP+SM AAI ++ + +A+LGDM E+GE++ H Sbjct: 312 TETVHNK----LVVDAYNANPSSMVAAIENFRLMNVENK---MAILGDMRELGEVTDVEH 364 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + E L +++VWL G + + ++ + I + G +++ Sbjct: 365 QKVVEQLKAAGLTNVWLVGENFGKTNTDFKK------FHDVEEVKAEIAKAQPQGHYILI 418 Query: 450 KSSNSCGFYRLINLL 464 K SN + L LL Sbjct: 419 KGSNGIKLFELPTLL 433 >gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides sp. 2_1_7] gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B] gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_19] gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B] gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_19] Length = 427 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 33/447 (7%) Query: 24 QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 F++ I+ DSR+ FFA+KG +DG+ + A+ G V++ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD+VL L +LA R II ITG+ GKTTTKE+L LS+ G Sbjct: 64 GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NNHIGVPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257 E + K E+++ + ++ ++ + + ++ G+ + D Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L + QGK V H IG + N+L + + + +A+ Sbjct: 244 PFL----------VFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + + P R + + N+ LI ++YNANP+SMK A+ + + +LGD Sbjct: 294 AAYEPTNNRSQFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S H ++ E + V+L G H + T + + + Sbjct: 347 MRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMVEEL 400 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + G +++K S+S G +L ++L Sbjct: 401 RKQPLKGYHILIKGSHSMGLEKLADIL 427 >gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] Length = 474 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 125/478 (26%), Positives = 198/478 (41%), Gaps = 23/478 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + ++ A+ G + P V G + DSR + F A G DGHD+ Sbjct: 1 MIAL-SLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 AVQ GA V+ ++ +P+ V D L A+ +LA A R + T+I +TGS G Sbjct: 60 AVQAGAAAVLGTREVP------GVPMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+++ + + +T A GS+NN +G P T + + + E G +G +R+L Sbjct: 114 KTTTKDLIAQLTARLGETVAPPGSFNNELGHPYTALQAVPSTRYLVLEKGARGIGHVRYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P I+V+ + +H+ F E IA AK E+ E L G LN DD + + + Sbjct: 174 CEVAPPRISVVLNVGVSHIGEFGSQENIALAKGELVEALPADGLAVLNADDPLVDAMAGR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A + +G++ +AD + + S V G H N L Sbjct: 234 TTA----RVVRYGEAAHADVRAVDVTLDERGRPAYTLVTPEGSATVRLALTGRHQVWNTL 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + AL R T+ID+SYNANPASM A+ Sbjct: 290 AAAAVARELGMPLVEIAVALGELGLVSTRRMD--VFERTDGVTVIDDSYNANPASMSVAL 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + R AVLG M E+GE H ++ + + + + + G + Sbjct: 348 RALAGVGA--GRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLLVVGEAAAPIHHG 405 Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 ++S L GDVV+VK S + + + L + A Sbjct: 406 ATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLVKGSR-YRTWEVADALRADAVAT 462 >gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 442 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 130/458 (28%), Positives = 203/458 (44%), Gaps = 24/458 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + +AI S G S+D+R+ + +FA++GP++DGHDFI AV+K A Sbjct: 5 IQTVARAIGASSEAAARSAS--GWSVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 +VV V D L AL L AR T+I +TGS GKTTTK+ + Sbjct: 63 ALVVERAYGVPGE------LVVPDTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAI 116 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+S +G++NNH+GVPL+L R+P G+ E+GM+H GEIR L + RP I Sbjct: 117 AHLLASEMPVGKTVGNFNNHVGVPLSLLRLPDGCRAGVIEMGMNHSGEIRELGAIARPEI 176 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V+T + AH+ F IE IA AK E+ EGL G LN DD A I Sbjct: 177 GVVTNVGYAHVEFFDSIEGIALAKRELIEGLTPDGVAVLNADDPRVAGFSAVHPGRSI-- 234 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG S++A+ + + + + ME G H N+L + + ++ Sbjct: 235 --TFGLSEHAEIRAEDVAAHAGGTR----FRALGMEFETGLSGRHAVMNLLAAIAVATVF 288 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A++ F + RG+R + ++ YN+NP + ++ I VL + Sbjct: 289 GIAPARMRDAVASFAAGKMRGERTEHNG----IVIWNDCYNSNPEAAQSMIDVLRETPAR 344 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVH 425 RIAVLG+M E+G + H + + + + + A+ + A + Sbjct: 345 R---RIAVLGEMLELGHAADELHRQVGRYAAEHGVDLLIGVRGAARAMVESAARAGLDAR 401 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + E + GD V+ K S + + Sbjct: 402 FFEDPAEAGDRARELAHAGDAVLFKGSRGVKVEKALER 439 >gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium bifidum NCIMB 41171] Length = 519 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 150/507 (29%), Positives = 218/507 (42%), Gaps = 50/507 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M P+ T + +A+QG I DSR + F AI G D Sbjct: 7 MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 65 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLR--SK 107 GHDF+ A + GA + +V ++ A + V D + AL LA AAR + Sbjct: 66 GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRAAGTP 120 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T+I ITGSVGKTTTK+++ LS++ T A +GS+NN IG+PLT ++ D F + E+ Sbjct: 121 FTLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G SH+GEI LT + P IAV+ + AHL F +E IA AK+EI +GL G LN Sbjct: 181 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 240 Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274 DD+ + + + GKS + S+ Sbjct: 241 DDAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 300 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + G + V G H N L + +L + + + LS Sbjct: 301 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 360 Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G FTLID+S+NANP SM+A + L++ + RIAVLG M E+G + H + Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420 Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438 E + I V G H AL AL + VH+ +D ++ Sbjct: 421 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 480 Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463 + D D VV++K S++ G L Sbjct: 481 ALAGDHDDTVVLLKGSHASGLSALAQR 507 >gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 452 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 58 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] Length = 464 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 194/470 (41%), Gaps = 24/470 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + G G ++ +S D+RS+ P + A++G +DGHDF A + Sbjct: 5 LLSL--IAHWAGGEIHGD--DVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++V + + +P V D AL K+A + + + AITGS GKT+ K Sbjct: 61 GASALLVER-----LLPIELPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKTSVK 115 Query: 124 EMLTIALSSIKKTYA-----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +L L + + G+ NN IG+PL + P D D+ ++E+G G+I +L Sbjct: 116 SLLLSILQQVAQHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + RP A++ IAPAHL + +A K I+ L G +N DD++ + Sbjct: 176 TDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQH 235 Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +G AD R + ++ S + VV G H N L Sbjct: 236 FVGTPARCRVLRYGLEHTADITARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNAL 295 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + D+ L+ P GR ++ L+D+SYNANP S+ AAI Sbjct: 296 AAASLALAAGVDLALIAAGLAEAQPVPGRQIAHQLRNG---AVLVDDSYNANPGSLAAAI 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ G VLGDM E+G +++ H + ++ G A A Sbjct: 353 DALAAAPEEG----WLVLGDMRELGPDAEALHAQAGLRARASGLKRLYALGPLSAAAAAA 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T D L ++ L G +VK S ++ LL + Sbjct: 409 FGEGGR--HFTTHDALSQALKDELHPGVRCLVKGSRGSAMDTIVKALLAQ 456 >gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 466 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 126/459 (27%), Positives = 197/459 (42%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D HDF+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133 + I V D AL +L R + S+ +IA+TGS GKTTTKEML LS + Sbjct: 85 -----DVDIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG SH GEI + + LV+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G E I AK+EI+ + G + D F + A I +FG Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILD---AAKAHRISTFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + S V G H QN + + ++ Sbjct: 255 VGGDVYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 ++ L +GR + + + ID++YNANP SM +Q+ +G ++ Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPTSM----RAAAQVLLQQQGVKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S V +T Sbjct: 367 VMGDIGELGDSSWQEHYDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1001] gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1001] Length = 475 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 190/467 (40%), Gaps = 18/467 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 N ++T + I G ++ +S DSRS P + F A+KG +D HDF+ Sbjct: 6 NAMFTLREAAALIPGATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + V+V +P V D L LA R + ++A+TGS GKTT Sbjct: 66 ARNVSAVLVARVPDGWT----VPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTT 121 Query: 122 TKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KEM+ ++ + A G++NN +G+PLTL R+ + ELGM+H GE L Sbjct: 122 VKEMIASIFAAAVGAAERLATAGNFNNDVGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 181 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +AV+ H + +E +A A + L+ G +D++ + + Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALKPEGVAVFPANDAYASIWR-- 239 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I F + + + ++ +++V +G H A N L Sbjct: 240 -VAATGNRIIDFALNTAERATEAAVTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALA 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAI 357 +D + L F +GR + R +ID++YNANP SM+AAI Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAI 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + R+ V+GDM E+G+ FH ++ + ++ G Sbjct: 359 DVLASHAS----PRVLVMGDMGEVGDNGPEFHREIGAYAKERGVDALYAMGDASRDAC-- 412 Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 + H+ + L +Q + +VK S R+++ Sbjct: 413 IAYGASAHHVADVGTLVAQLQQAGFGAAATFLVKGSRFMQMERVVDA 459 >gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 217/470 (46%), Gaps = 24/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ F L + G V I+ D+R++ E F A+KGP++DGH FI A Sbjct: 1 MIPM-DFDWLANVLTTDYQGD--NQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 QKGA V+V + + IP F V D AL + A + IAITGSVGKT Sbjct: 58 KQKGAIGVIVQHKV-----DVDIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM LS A G++NN IGVPLTL R+ F + ELG +HLGEI + T Sbjct: 113 TVKEMCAAILSVHGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +AV+ +A AHL F + +A AK EIF+GL+ G +N D F + K Sbjct: 173 MTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLDKLE 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +K F ++ D + ++ + + K + V G H N L+ Sbjct: 233 GRNVKC---FSTTEKLDIWAENITLDANARASFTLCTKNKQVPVTLALPGKHNISNALIA 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + S ++ AL+ +GR + T++D++YNAN S+KAAI + Sbjct: 290 AALTSEFDVTLEEIANALATMGDVKGRVNLIEVS---DLLTVVDDTYNANVKSVKAAIDL 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 LS + +G RI LGDM E+GE ++ +H ++ E I ++ G D Sbjct: 347 LSDM----QGHRILALGDMGELGEDARKYHQEVGEYALEQGIDELFTLGVLSKYASDVFE 402 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + IQ S+ +VVK S S L+ L+ Sbjct: 403 LPNR--HFSSREQMQQKIQESINKVNKKTTIVVKGSRSSRMELLVTDLVN 450 >gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 452 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 58 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SM+AA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMRAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC 25986] gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC 25986] Length = 474 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 118/469 (25%), Positives = 196/469 (41%), Gaps = 16/469 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L A ++ G IDSR + F A G + DG+DF AVQ GAG Sbjct: 6 VNNLAAATGARTVTGEADQVCRGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAG 65 Query: 67 LVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV+ + A + + DD L +LA RL ++ ITGS+GKTTT Sbjct: 66 AVVMTREPEAELVSLAQDKGCAILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTT 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K++L L+ + +A G++NN IG+PLT+ P D + + E+GM+H EI L+ Sbjct: 126 KDVLAAVLAKRYRVWATKGNFNNLIGMPLTVLSAPADTEVLVLEMGMNHFHEIERLSQSA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL----NYDDSFFELLKAK 238 P++A+++ I +H+ E IA AKAEI +G+ G +D F ++ Sbjct: 186 NPNLAIVSKIGTSHIGILGSRENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDT 245 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G S + + + R + E L E + + Q++ Sbjct: 246 FAQPAGIDVMLAGVSDDDEVRARDVRVDDEG-RPVFTLDFGQGETIDTMLAIPGVQSVPN 304 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + ++ T + + F G R + +ID+SYNA+ SM A + Sbjct: 305 AVKAAAVAYRLGVTPEQIDAAFRGLTITGHRQEIKRAKSGARVIDDSYNASAESMAAGLD 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDA 417 +L +S G R+A+LG+M EMG+ + H + + + + G + DA Sbjct: 365 LLCSLS--CTGSRMAILGEMGEMGDEAPRMHELVGAYAAAKKLDMLACVGGELAQLMADA 422 Query: 418 LP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + + +L DV +VK S R + Sbjct: 423 ARMMGMDEDRIQVFSDYQQVLDRMGGALEKHDVALVKGSRFVELDRFVE 471 >gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter calcoaceticus PHEA-2] Length = 466 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 126/459 (27%), Positives = 197/459 (42%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D HDF+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133 + I V D AL +L R + S+ +IA+TGS GKTTTKEML LS + Sbjct: 85 -----DVDIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG SH GEI + + LV+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G E I AK+EI+ + G + D F + A I +FG Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILD---AAKAHRISTFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + S V G H QN + + ++ Sbjct: 255 VGGDVYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 ++ L +GR + + + ID++YNANP SM +Q+ +G ++ Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPTSM----RAAAQVLLQQQGVKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S V +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAAFEGADSHSNKVKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] Length = 493 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 201/465 (43%), Gaps = 43/465 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------------------ 72 IDSR + P F A+ G +GH F+ + +GA +V+ Sbjct: 35 VIDSREVEPGTLFVALAGERTNGHTFLPDVIARGALGALVSRTEIEARTTILARTPRRWA 94 Query: 73 -------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + S + VDD L AL +LAV R + T++ ITGSVGKT+TKE Sbjct: 95 LVNPVTGAGLDSATPGVCLLIAVDDPLMALQRLAVYHRRQLTPTVVGITGSVGKTSTKEA 154 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS T S+N+ VP TL ++ + + E+GM GEIRFL L RP Sbjct: 155 LAALLSQRFCTLKSKRSFNSEATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLARPQ 214 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I ++T + P HL E I AKAE+ E L + G LN DD ++ ++A Sbjct: 215 IGLVTNVGPTHLERLKSQEAIWYAKAELVEELPRDGWAVLNADDPLVWAMRDMTNA---- 270 Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++S+G + +A + + + M V Q + + + IG H L + + Sbjct: 271 RVFSYGLAPHATLWANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGL 330 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 IL + I L+ R R Q TLID++YNA P S AA+ +L Sbjct: 331 ILGMEWPAMIAGLTD----PAAQARLRVVAGQHATTLIDDTYNAAPISTLAALDLL---- 382 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 GRR+A+LGDM E+G + H + + + + G + + +A ++ Sbjct: 383 GATPGRRVAILGDMLELGSAEEEGHRQVGQRAAQV-ADLLVTVGQRAIWIAEAARQAGMP 441 Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H+ T ++ L+ GD +++K+S ++ L Sbjct: 442 SAHILVCMTNAEAIASVRPRLMPGDHILLKASRGMALEEIVVALQ 486 >gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 463 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 12 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 69 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFK 244 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 245 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 358 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463 >gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii DSM 2075] gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii DSM 2075] Length = 466 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 136/462 (29%), Positives = 210/462 (45%), Gaps = 15/462 (3%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A G P + G+ DSR+IAP + F A+KG ++DGHDF+ A+Q GA + Sbjct: 9 VIAATGAELTGQAPAQAMAGVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAAL 68 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V + + + VDD AL +LA A R A I+A+TGS GKT+TKEM+ Sbjct: 69 VERGF--NPTAAGQCLLRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQV 126 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L + + G+ NNHIG+PLTL + + + E+GM+ GEI +L + RP +AVI Sbjct: 127 LGQRFEVHKTKGNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVI 186 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + PAHL IE +A+AKAE+F+ L +N DD K + + Sbjct: 187 TNVGPAHLGPLGSIEAVAAAKAELFQALGPEAVAAVNLDDPLLAPWADKL----PCRVIT 242 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTA 308 FG A + R + +++ + E G H +N L + + L Sbjct: 243 FGLDPKAQARARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVGAGLGL 302 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + F P +GR +G LID++YNANPAS+ A + L+ +S G+ Sbjct: 303 EAWQIKDGVEAFTPTKGR---LENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGK 359 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HV 424 G ++GDM E+G + H + + V G + + Sbjct: 360 G-HGLIMGDMGELGPEAPRLHRQVGRQAVEFGCKFVLAVGQMADEVVAGAREAGLAAPKA 418 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +D L + +G V+VK S + R+I L E Sbjct: 419 LAFAEVDQLIDASPRVIGEGWTVLVKGSRAARMERVIQRLQE 460 >gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] Length = 465 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 210/467 (44%), Gaps = 14/467 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G +G V G + DSR + A +G DGH F+ A +G Sbjct: 4 SAQWIAVAVSGRLVGN--DVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKT 120 A V+V ++ + + V+D AL LA A + +IA+TGSVGKT Sbjct: 62 AVAVIVEHEVDEA-----VTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++L +S T A S+NN +G+PLT+ + E+G S G I +LT Sbjct: 117 TTKDLLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTD 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P +A+ + AH+ F G E +A+AKAE+ +G G + LN DD E + + Sbjct: 177 IVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLAT 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I+ S + + + + + S+ V +G++ + +H+A + Sbjct: 237 GRVIRFSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAAAA 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +++ A R + ++ TLID+SYNAN SM+A I+ L Sbjct: 297 GALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAAL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + I + +RIAVLG+M E+GE SQS H + +++ + + G + P Sbjct: 357 ASI--GRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPE 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H + DG VV+VK S +++ ++L E+ Sbjct: 415 VPHREVAADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREK 461 >gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI18] gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA6140] gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID24-1] gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] Length = 452 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 58 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 217/472 (45%), Gaps = 28/472 (5%) Query: 1 MNPL---WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ W + L QG V I+ D+RSI E F A+KGP++DGH FI Sbjct: 1 MIPMDFDWLANVLATDYQG------DNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFI 54 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A Q GA V+V + + IP F V D AL + A + IAITGSV Sbjct: 55 AQAKQNGAIGVIVQHKV-----DVDIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSV 109 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTT KEM LS A G++NN IGVPLTL R+ F + ELG +HLGEI + Sbjct: 110 GKTTVKEMCAAILSVHGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAY 169 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 T + +P +AV+ +A AHL F + +A AK EIF+GL+ G +N D F + Sbjct: 170 TTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLD 229 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K + S K + + + ++ + + + V G H N L Sbjct: 230 KLDGRKVTRFSSSEKLDIWAENISLDE--NARASFTLCTKNAQIPVKLALPGKHNISNAL 287 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + S ++ AL+ +GR T++D++YNAN S+KAAI Sbjct: 288 IAAALTSEFDVTLEDIANALATMGDVKGRVN---LINVSDLLTVVDDTYNANVKSVKAAI 344 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +LS + +G RI LGDM E+GE ++ +H ++ E I+ ++ G D Sbjct: 345 DLLSDM----QGHRILALGDMGELGEEARQYHQEVGEYALEQGINELFTLGVLSRYASDV 400 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466 + + + + IQ+S+ D +VVK S S L+ L+ Sbjct: 401 Y--GLPNRHFSNREQMLQQIQTSIKKVDKKTTIVVKGSRSSRMELLVTDLVN 450 >gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 124/479 (25%), Positives = 203/479 (42%), Gaps = 32/479 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG ++ +S D+R+I + F A+KG +D HDF A Sbjct: 1 MIEVQ-LSQLASVLNAELIG--ADTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQTA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGS 116 GA ++V+ + + +P V D AL ++ + + +A+TGS Sbjct: 58 KDNGAKALLVSKRL-----PVDLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KE+ L++ A G++NN IG PLTL R+ + + + ELG +H EI Sbjct: 113 CGKTTVKEISAAILATKGNVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQQEIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T+LV+P +A+I +A AHL F ++ +A AK EIFEGL G +N D + L + Sbjct: 173 YTTNLVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLSDGGIAIVNLDSNDLPLWQ 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + T + + + + + ++V G H N Sbjct: 233 PLLAQHQVLTFSATASDADYHAERININA-QGLACFTMCTPIGKVDVNLTLAGMHNVANA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + L A + L +GR LID++YNA+ A++KAA Sbjct: 292 LAAAALTISLGATLAEVKAGLETMANVKGRLDITEPRAG---LRLIDDTYNASVAAVKAA 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ +G+R +LGDM E+G+ S + H ++ E + V G + D Sbjct: 349 IDVLANF----QGQRYFILGDMAELGDESDNLHREVGEYAQAKQLDCVMTFGRASAVVSD 404 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDG----D----VVVVKSSNSCGFYRLINLLLEE 467 + L ++ L D V+VK + S +I L ++ Sbjct: 405 L----NQGQHFTDKTALIALLKQQLQQHFSQPDFEQVTVLVKGARSSKMEDVIAALQDD 459 >gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 415 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 122/435 (28%), Positives = 197/435 (45%), Gaps = 20/435 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T ++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + N+DF S + +Q S++V+ G H N L Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ GR + + N ++D++YNAN SM AA+ VL Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S++ G R+ V+GDM E+G S++ H+ + E I V +G + A Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA--- 400 Query: 421 SIHVHYSETMDGLFL 435 S + L Sbjct: 401 SGVGEHFADKAALIA 415 >gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/492 (22%), Positives = 188/492 (38%), Gaps = 34/492 (6%) Query: 1 MNPLWTFHDLLQAIQGH-----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M+ + T + G + Q ++ + DSR I E F A+ G +D HD Sbjct: 1 MSIMTTLAQAQAMLPGSTLVNVLVEAAQQLTLSRVGTDSRQIDRNELFVALVGERFDAHD 60 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 F+ A + G G ++++ +P V + L LA A R + +TG Sbjct: 61 FLSDAAKAGTGAALISSQ---DKCPADLPAICVSNTRVGLGNLAKAWRANHPIPLALVTG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 S GKTT KEM+ + G+ NN IG+PLTL ++ + ELGM+H Sbjct: 118 SNGKTTVKEMIASIFKAAVGEQHTLVTKGNLNNDIGLPLTLLKLRSTDRLAVVELGMNHP 177 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE L + + +IA+I H + + +A ++ L G D F Sbjct: 178 GETAQLAVIAQANIALINNAQREHQEFMATVAAVAEEHSDAIRTLPSDGVAIFPADSEFA 237 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + + + + A + + ++++ + ++EV + +G H Sbjct: 238 GVWRQAAAGRKVIDFVLSSAQTKASAAVTGCLLSNG--LVQIKSEQGTIEVQLNTLGSHN 295 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L + ++ + L F P GR + TLID+SYNANP S Sbjct: 296 VRNALAASAVGIAAGVSLEKIKQGLESFSPVNGR---MQAKAIDSSRTLIDDSYNANPDS 352 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++ AI L +LGDM E+G FH ++ + ++ ++ G Sbjct: 353 VRVAIDALK----QSGNLSWLILGDMGEVGNQGPEFHREVGAYAAEQGVAKLFALGEQCQ 408 Query: 413 ALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGD-------VVVVKSSNSCGFY 458 + H + MD L ++ +L ++VK S Sbjct: 409 FALQGFNEVNKGGETTSHAKHFADMDSLIAQLRDALRSQSSGSNQHLNILVKGSRFMRME 468 Query: 459 RLINLLLEEFPA 470 R++ LLEE Sbjct: 469 RVVQALLEEAKT 480 >gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM 14600] gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM 14600] Length = 560 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 209/550 (38%), Gaps = 98/550 (17%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-------------GFVNGISIDSRSIAPQEAFFAIKGPHY 51 T ++ A G I + + G+ D+R + F G Sbjct: 12 MTLANIAAACGGELIFPAEEPYANGRVKADYERLTIAGVVTDNRQVERDFLFIPFVGEKV 71 Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 D H FI A ++GA + D+ +G P V+ AL +A R + K ++ Sbjct: 72 DAHRFIPQAFEQGAACSLSEEDLTDPVG----PCIRVESSQRALMDIAAYYRRQLKLPLV 127 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 I GSVGKT+TKEM+ LS G++NN IG+P+T+ ++ + E+G+ + Sbjct: 128 GIIGSVGKTSTKEMVASVLSRHYSVLKTEGNFNNEIGMPMTVLKIRDHHQVAVVEMGIDN 187 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 G++ L + RP+I VIT I AHL + I ++K E+F+ L ++ LN DD Sbjct: 188 FGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGILASKTEVFDYLADGASVILNGDDDH 247 Query: 232 F----------------------------------------ELLKAKSHALGIKTIYSFG 251 E L G+ Sbjct: 248 LNCIRRAGGARIIFYGLGVDSSAAAREKDKDKLARLNGQIAEHLAKAKDRDGLADGCFDM 307 Query: 252 KSKNADFQLRKWKQC---------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + D + + E E V G H N L + Sbjct: 308 SAAYTDQERLARETYRAENLSALGMEGMSASFITPEGDFEAVIPIPGEHNVYNALAAAAV 367 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D+D + GR L+ G TLID+ YNANP+SM+A+++VL+ Sbjct: 368 GQSLGLDLDEIKAGMETASTISGRAHF----LHLGGLTLIDDCYNANPSSMRASLAVLA- 422 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 +GRRIAVLGDM E+GE + + H +L E + I ++ +G + + Sbjct: 423 ---RAKGRRIAVLGDMGELGENAPAMHYELGERAAEEGIDMLYAAGALGREIARGASDAS 479 Query: 422 -----------------------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + ++ D L + L +GD V+VK+S+ GF Sbjct: 480 LNRREEGAFFAEEGGGAHRREKPMEIYACPDRDALLADLLGRLKEGDTVLVKASHFMGFE 539 Query: 459 RLINLLLEEF 468 ++ + E + Sbjct: 540 EVVKAIQESY 549 >gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 202/473 (42%), Gaps = 31/473 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + IG + +S D+R+I + F A+KG +D HDF A GA Sbjct: 6 LSQLASVLNAELIG--ADISIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122 ++V+ + + +P V D AL + + + +A+TGS GKTT Sbjct: 64 ALLVSKPL-----PVELPQLVVSDTRIALGMMGAWLKAQMTEKYGLKTLALTGSCGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM L++ + A G++NN IG PLTL R+ + + + ELG +H EI + T+LV Sbjct: 119 KEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEIFYTTNLV 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P++A+I IA AHL F ++ +A AK EIFEGL + GT +N++ + L + Sbjct: 179 KPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQPLLAEH 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + T + AD+ K K ++ + + N+ L Sbjct: 239 QVLTFSTDS--HQADYFAEKIKITTQGLACFTMCTPIGKIDI--NLALAGMHNVSNALAA 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ + T + R LID++YNA+ A++KAAI VL+ Sbjct: 295 AALTVSLGATLADVKAGLETMANVKGRLDITEPYARLRLIDDTYNASVAAVKAAIDVLAS 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 EG+R + GDM E+GE S + H ++ E + V G + + Sbjct: 355 F----EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMTFGHSSAVVSEL----N 406 Query: 423 HVHYSETMDGLFLFIQSSL-----VDGD---VVVVKSSNSCGFYRLINLLLEE 467 + L + ++ L V+VK + S +I L E+ Sbjct: 407 QGQHFSDKGALIMSLKQQLQQYSRQPDAETVTVLVKGARSSKMEDVIAALQED 459 >gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 452 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 58 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] Length = 469 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 235/469 (50%), Gaps = 18/469 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHY-DGHDFILHAV 61 +W+ DL A+ + VNGI +S+ I P + F A++ + DGH F+ A+ Sbjct: 5 IWSAADLTAALG-----VPVNVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDAL 59 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120 +GA V+V+ + + + + V++ + AL++LA R + T I ITGSVGKT Sbjct: 60 ARGADAVIVSKLID---NNTNDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKE++ S+ KT+A ++NN +G+ L LA +P++ ++ IFEL GE++ L Sbjct: 117 STKEIMFKVFSTHYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELCTRSPGELQKLVK 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ +IAV+T I AH F+ +E + AK EIF GL G +N D FF + Sbjct: 177 ILPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYIN 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LGI +++FG + ++ ++ + ++ + + ++ + Q + Sbjct: 237 KLGINNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAA 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAIS 358 ++ ++ + + G+ LN + +ID+ YNANPASMK A+ Sbjct: 297 VMLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALD 356 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L QI + +A+LGDM E+G ++ H++L + YNI HV G + + + L Sbjct: 357 LLDQIKAKRK---VAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVISIGSLMKNVYELL 412 Query: 419 PRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 P + + + ++ L + L D D V++K SN ++++ LLE Sbjct: 413 PAELKLSHYNNINELTVDQLLPLLHDKDYVLIKGSNRMRLWQVVENLLE 461 >gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 12P80B1] Length = 494 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QA QG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + +P V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 A+ S F + ++ Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ + + T + ++ ++ + K L+ Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKGRLMRLSM 363 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454 +L I HV+ G H+ A+ + + L + L G V+ K S Sbjct: 420 ALLEIDHVFTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLCQLLSHGSATVLFKGSRG 479 Query: 455 CGFYRLINLLLE 466 LI L Sbjct: 480 MAMESLIADLTA 491 >gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium luteolum DSM 273] gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium luteolum DSM 273] Length = 476 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 115/440 (26%), Positives = 179/440 (40%), Gaps = 12/440 (2%) Query: 31 SIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VASIGSLSIPV 85 +IDSR+I P F A++G DGH F+ ++GA +V+ + + Sbjct: 34 AIDSRAIDGPG-IFIALRGESTDGHRFVQDVFRRGADFAMVSREWHSLEKDPVPPPGKAY 92 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D L +LA R ++ I GS GKTTTKEM L + K + G++NN Sbjct: 93 IVVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKEMTAAVLRTGFKVHVSRGNFNN 152 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 H+GVP+TL M D + + E+G++H GE+ LT + RP ++T I HL +E Sbjct: 153 HLGVPITLLGMRRDTEIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEG 212 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + A+ ++F+ L++ D L + +Y G + Sbjct: 213 VRLAERKLFDWLDRCRGTIFVNADD--SRLADAATDSERHVLYGTGSPEGRICSAESVSV 270 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 G E V + V + +KA E Sbjct: 271 GHGGRVSFTLTAGAVREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPES 330 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 KR +G T+I+++YNANP SM+ A+ L+ + GRRIAV+GDM E+G + Sbjct: 331 GWKRLE-LSEEGGVTIINDTYNANPDSMRLALDTLADMP--CSGRRIAVIGDMLELGATA 387 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H + L+ I + G LP H D L +Q + GD Sbjct: 388 EDEHRSIGRYLAGLPIDMFFTFGALAGLGGRELPERCRGH-FTGRDELLHALQEEVRSGD 446 Query: 446 VVVVKSSNSCGFYRLINLLL 465 V+ K S + L+ Sbjct: 447 AVLFKGSRGMHLEQTAGALI 466 >gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] Length = 453 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG ++ +S DSR I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLIG--ADRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VIGGAVALLVERELDA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL +N + +L K Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLRAGAVAIVNLESHGGDLWKTDLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT + NADF R + + + + ++V IG H N L Sbjct: 233 DKTVKTFST--TDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + L+ +GR + TLID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIRHGLAHLAKVKGRVDLTHLRQDI---TLIDDSYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + ++ V G + D Sbjct: 348 LGGFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 201/469 (42%), Gaps = 16/469 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ +G I P ++ + D+R + F A+ G DGHDF+L A Sbjct: 1 MKPIA-LDQAAINAEGILIAGSPGLALSSVHFDTRELTVGSLFVALTGGARDGHDFLLQA 59 Query: 61 VQKGAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 ++GA +V+ + + + V+D L KLA A R IAITGS+GK Sbjct: 60 AEQGAVAALVSNQEKIPGDLPNDFGLILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT K+++ L+S Y ++NNHIGVPL+L +M + + ELGM+H GEI L Sbjct: 120 TTVKDIVAHVLASRSPVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 LV+P I+VIT I +H+ F E+IA AKAE+ G + LN D + L+ Sbjct: 180 SLVQPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAHLY 239 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLM 298 + + ++ AD + + + +V G+ E G H N L Sbjct: 240 PGE----LMYYSVNEKADIWAEQIETVEGGTRFKVYLASGEYFEAFLPLHGRHSVLNALP 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + I L D + ALS + R+ + I ++YNA+P SM+AA+ Sbjct: 296 AVAIAKRLGMDTEQIAYALST---VQLSAMRFEQINGKHATVYISDAYNASPVSMEAAVR 352 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLSGFHVLALKD 416 +++ P I VLGDM E+G S++ H + + + G L D Sbjct: 353 TFAELYPECAR--IVVLGDMYELGPDSRAMHAGVGASIQDIAERFELLVTIGEDSRHLHD 410 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A + T + + + K+S + LI L Sbjct: 411 AYAGKK--LHFATKAEAMAALLPLRDEKHAFLFKASKGMSLWTLITDLE 457 >gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 103P14B1] gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis O35E] gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 101P30B1] Length = 494 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QA QG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + +P V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 A+ S F + ++ Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ + + T + ++ ++ + K L+ Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454 +L I HV G H+ A+ + + L ++ L G V+ K S Sbjct: 420 ALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRG 479 Query: 455 CGFYRLINLLLE 466 LI L Sbjct: 480 MAMESLIADLTA 491 >gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis EO147] Length = 468 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 117/471 (24%), Positives = 197/471 (41%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSR+ + + F A+KG H+D H+F+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A + ++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAAGADARLATAGNFNNDIGLPLTLLRLTAAHRLAVVELGMNHPGETET 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + S + + ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAGHDTPAAVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 + + + L F P +GR + R + T+ID++YNANP SM+AA Sbjct: 293 ASTAAALAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G + Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDSLYALGAATQPACE 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + L + ++VK S R++ L E Sbjct: 409 AYGAAARRFDDAAALLAALLAANF-GAHATLLVKGSRFMKMERVVGALANE 458 >gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] Length = 447 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 126/443 (28%), Positives = 199/443 (44%), Gaps = 32/443 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GIS D+R I P FFA+KG +++G+ F A++ GA V++ + Sbjct: 32 DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKDKT----IL 87 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+DVL L LA A R ++A+TGS GKTTTKE++ LS KT A G+ NNHI Sbjct: 88 VEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGNLNNHI 147 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + + GI E+G +H+GEI LT + P IT AHL F ++ + Sbjct: 148 GVPLTLLSMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYITNFGKAHLEGFGSVQGVI 207 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L D + + + S + Q Sbjct: 208 KGKSELYDYLIAHKGTLFLNLDDPIQA----------EKLGSTHTFCFSAHQETDLNIVY 257 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + Q + V + +G + N+ I + + +AL + PK R Sbjct: 258 HTAQPFANFQFDEITVNSNLMGQYNTINLAAAAAIGTFFKISAEDIKEALEAYVPKNNRS 317 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +N G T+I ++YNANP SM+AA+ + + +G +IA LGDM E+GE S Sbjct: 318 ----QIINNGDQTIILDAYNANPTSMEAALRNFAGL--ERQGPKIAFLGDMFELGETSAY 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-----IQSSLV 442 H +A + + +I H+ L G H + ++ L +Q +L Sbjct: 372 EHQFIANLAAQLDIDHLILLGSHFEKT------NTTAFKFTDVNQLKEQNLPVSLQKAL- 424 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 +++K S L++L+ Sbjct: 425 ADATILIKGSRGMKLETLLDLVQ 447 >gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] Length = 463 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 12 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 69 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 244 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 245 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 358 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463 >gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] Length = 459 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 168/466 (36%), Positives = 235/466 (50%), Gaps = 20/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT ++ A G + G V+G++ DSR + P + F A+ G DGH F+ A Sbjct: 1 MT-LWTADEIATATGGQASGAFA---VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ D P V D AL L A+R R++ATII +TGSVGKT Sbjct: 57 FAQGAAGALVSADTPH-------PHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKT 109 Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 + KE L AL + + SYNNH GVPL+LARMP DV G+FE+GM+H GE+ L Sbjct: 110 SAKEALYAALERGWHGRVHRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSAL 169 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T +VRPHIA++T IAPAH F IA AK EIF+GLE GT + YD + L A Sbjct: 170 TAMVRPHIAIVTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGTAIIPYDSPHRDRLIAA 229 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + + + + S++ +L + + G H N L Sbjct: 230 AKPYAARIVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALA 289 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V D+ A AL+ GRG R+R A +IDESYNANPASM+A ++ Sbjct: 290 VLAAVDAAGGDLGLAGLALAELGGLAGRGARFRAANGA---LIIDESYNANPASMRATLA 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ GR +AVLG+M E+G+ S +H LAE + ++ V L G + L AL Sbjct: 347 VLA----EEPGRHVAVLGEMRELGDDSADYHAGLAEPILAAHVEKVLLVGESMAPLAAAL 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + S + DVV++K SN G R++ L Sbjct: 403 EGRVDFVHVTDAKAAQAALASIIAPNDVVLIKGSNGVGLARVVAGL 448 >gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 459 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 125/465 (26%), Positives = 192/465 (41%), Gaps = 21/465 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + + + G P+ + G+SIDSR+I + I G +DG FI Sbjct: 5 SLDQISKMLGGEI--SDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQN 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G+ +++ + S++IP VDD AL LA A R IIAITGS GKTT+ Sbjct: 63 AGSPAFLIDKNFKIP-KSINIPYIIVDDTQKALRDLARAYRKELDIKIIAITGSNGKTTS 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K ++ LS K G+ NN IGVPLT+ D D G+ E+G GEI LT++ Sbjct: 122 KNIIHSVLSEKYKVEKTHGNLNNEIGVPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +A+IT I AHL E IA AK EI EGL+ G N DD + + Sbjct: 182 RPDMAMITNIGDAHLLKLKTREGIAKAKLEILEGLKDDGIFLYNGDDEILKKVLPSYEIK 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG DF++ + + K +G H N + + I Sbjct: 242 --QKTISFGMGDKVDFKVEAKEY----TSTSTNFSYKDENYSVPLLGSHQVYNGALAVLI 295 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + D LS + + F ++D++Y +NP S+K + + Sbjct: 296 GKLFDLSYDQIKVGLSKSS----NNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGF 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421 + + I VLGDM E+G+ + H + I++ G + A + Sbjct: 352 LDGYLNK--IVVLGDMLELGDDELNLHYKSGLDIDPKKINYCLFFGPLCKEMYRASLENF 409 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 Y E + L ++ + +V VK S +I + Sbjct: 410 PQDRSFYFENKNDLIDKLKLLITKSTLVFVKGSRGLHMEEVIEAI 454 >gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 463 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 12 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++G VDD L AL LA A R + ITGS GKT Sbjct: 69 LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI+ GL G + +D+ + K Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 244 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D + ++ + VV G H N Sbjct: 245 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 358 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463 >gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermomonospora curvata DSM 43183] gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermomonospora curvata DSM 43183] Length = 475 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 195/472 (41%), Gaps = 16/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL + G + V G + IDSR++ P F A++G DGHDF Sbjct: 1 MIPLA-LSQIALLSGGKATPGAEDALVTGPVVIDSRAVVPGALFVALRGERADGHDFAAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 AV + ++P VDD + AL +LA R + T++ +TGS G Sbjct: 60 AV----AAGAAGVLAQRPLDDPALPAVIVDDAVAALGRLAGGVLARLPQVTVVGVTGSAG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L T A GS+NN IG PLT+ R + E+G +G + +L Sbjct: 116 KTSTKDLIAQVLRRHGPTVAAEGSFNNEIGHPLTVLRADEQTRHLVLEMGARGIGHVAYL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P I V+ + AHL F E IA AK E+ E L G LN DD + A+ Sbjct: 176 CRVAPPRIGVVLNVGSAHLGEFGDREAIARAKGELVEALPADGAAVLNADDPLVRAMAAR 235 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + + A + + + + S V G H N L Sbjct: 236 TAAEVLTFGRAADADVRAADETLDAR---GRPRFTLVTPRGSAPVELRLHGRHAVGNALA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + V+ +ALS P R T+++++YNANP SM+AA+ Sbjct: 293 AAAVALRAGMAVEAIARALSQAAPL--SRWRMEVTERPDGVTVVNDAYNANPESMRAALE 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ ++ GR A LG+M E+G S + H + + ++ + + G L D Sbjct: 351 AVAHMARAAGGRAFAALGEMAELGARSVAEHEKIGQHVARNGYAGLVAVGEAAAPLLDGA 410 Query: 419 PRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ + + + L DVV+VK S G R+ LL Sbjct: 411 RQAGSWTGECVQVDDVGAAVTALSERLRPRDVVLVKGSRVAGMERVAQGLLA 462 >gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alistipes shahii WAL 8301] Length = 417 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 124/436 (28%), Positives = 192/436 (44%), Gaps = 33/436 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R I P FFA++G +DG+ F+ A++KGA V + VA+ + VD Sbjct: 14 ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQ-RIVLVD 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL LA R I+AI+GS GKTTTKE+++ L+ + YA G+ NNHIGV Sbjct: 73 DTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL M D +FG+ E+G S GE+ L + P+ ++T I AHL F G E + Sbjct: 133 PLTLLAMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNIGLAHLEGFGGPEGVRRG 192 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+F+ L G D L + Sbjct: 193 KGELFDFLAANGGHAF---------------------------VPADDEILTGMAAERDS 225 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + + +H G + N+ + + + A++ + P Sbjct: 226 LADEYYSASLADGIENHLEGSYNRFNIAAAVAVGRYFDVPDERIRHAIASYVP----DNN 281 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + TL+ + YNANP+SM+A++ RR+ +LGDM E+G+ S+ H Sbjct: 282 RSQRIGTSRNTLVADCYNANPSSMRASVGNFLAEPLEERQRRVLILGDMLELGDWSEREH 341 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 + E+ + + + L G D L +V T D L ++ S V+ +V+ Sbjct: 342 AAIIEMAAQDPEAELLLVGPEFAKAYDGLAEKPANVTLCPTRDDLISLLKVSPVEHSLVL 401 Query: 449 VKSSNSCGFYRLINLL 464 VK S+ G + + L Sbjct: 402 VKGSHGMGLEQALEAL 417 >gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis C6786] Length = 468 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 117/471 (24%), Positives = 197/471 (41%), Gaps = 17/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSR+ + + F A+KG H+D H+F+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A + ++NN IG+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAAGADARLATAGNFNNDIGLPLTLLRLTAAHRLAVVELGMNHPGETET 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + S + + ++V + +G H A+N L Sbjct: 235 --VAATGNRIVDFALHGAGHDTPAAVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 + + + L F P +GR + R + T+ID++YNANP SM+AA Sbjct: 293 ASTAAAFAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ S R+ V+G+M E+G+ +FH ++ I ++ G + Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDSLYALGAATQPACE 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + L + ++VK S R++ L E Sbjct: 409 AYGAAARRFDDAAALLAALLAANF-GAHATLLVKGSRFMKMERVVGALANE 458 >gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] Length = 466 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 124/475 (26%), Positives = 205/475 (43%), Gaps = 32/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L +F + A+QG + + + +SIDSR++ F ++G DGH +I Sbjct: 1 MKNLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYIRS 60 Query: 60 AVQKGAGLVVVNTDMVASIGSL----------SIPVFGVDDVLGALNKLAVAARLRSKAT 109 A++KGA L + ++ + S V + L AL A + Sbjct: 61 ALEKGAVLFFADEKFLSVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFPNL 120 Query: 110 I-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 I + ITGS GKTTTKE+ LS G+ N+ G+PL++ + + + GIFELG Sbjct: 121 IKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSETGLPLSVFEVRDEHEVGIFELG 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 M+ GE++ +T ++ P +IT I AH+ + IA K +IF +K F+ D Sbjct: 181 MNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQIFSFFDKDCMGFVP-D 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 F + L+A + + K K+ + + K E+ Sbjct: 240 CPFTDFLQAVPLGKVVCYENTTLK---------NIKKIESKGMYGSTIFYKDEEICFPLA 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H +N + + L V + L P GR + + ++ + + YNA Sbjct: 291 GNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQFMQGDVD-----CLFDCYNA 345 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM AA++V S+ G++ AVLG M E+G+ S + H + + +I ++L G Sbjct: 346 NPDSMSAALAVFSETKVQ--GKKAAVLGSMLELGKESAAAHKKICAQAAASDIDFIYLFG 403 Query: 409 FHVLALKDALP-RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + V Y + MD L + +L GD V++K+S RL Sbjct: 404 KEIGDSGKNINWNGKTVFYFDESEMDALGKALDENLHRGDFVLLKASRGLALERL 458 >gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] Length = 475 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 186/461 (40%), Gaps = 18/461 (3%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A G + V G ++DSR + FFA+ G DGH F+ A+ GA Sbjct: 6 AEVAEATGGRLVAGDGGVTVAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARG 65 Query: 68 VVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTK 123 V+ + + V V D AL LA R R ++ ITGSVGKTTTK Sbjct: 66 AVIARPLAEVLPGGPPPGTAVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTK 125 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM L G+YN IG+PL L + + E+ M LGEI L + Sbjct: 126 EMTAAVLEQRFAVLKTAGNYNTDIGLPLILLDLEDHHQVAVLEMAMRGLGEIARLASIAE 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T +A +HL +E+IA AK E+ E L G LN D A Sbjct: 186 PDIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRVRA----MAART 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG AD + + + +++ G V + A + V Sbjct: 242 RARVLTFGVEGGADVRAVAVESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAV 301 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ AI A R A + +TL + YNA+P S AA+ L Q+ Sbjct: 302 GVVLGLDADAIAAGLGRARPASLRSEIRQAGS---WTLFIDCYNASPTSTAAALQALRQV 358 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + G+ R +A+LGDM E+G+ ++ H + + ++ + G AL + + Sbjct: 359 A--GDRRAVAILGDMFELGDWAEEGHRRTGQ-AAARSVDVLLAVGRWAPALVEGWRQAGG 415 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + L + L GD +++K S + Sbjct: 416 AAGAAAAYPDKAALLADLDRWLHPGDAILIKGSRGMAMEEV 456 >gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] Length = 453 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + +G ++ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLVG--ADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D AL +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVQRELEA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + + + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL + ++ D + E KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVSLDSNGGEHWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + ++V IG H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFTLVTLIGEVDVELGIIGQHNVANALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + L+ +GR + + LID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEIRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + G V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. WH 7803] gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. WH 7803] Length = 471 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 111/468 (23%), Positives = 174/468 (37%), Gaps = 15/468 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L++ P ++ + DSR++ P F ++G +DGH F+ AV+ Sbjct: 5 LSQLVELWGQPLWAGGPAPDLSKALGPVCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVE 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA V +D ++ + + V D L A +LA R + A ++A+TGS GKTTT Sbjct: 65 RGAQAAFVASDCAHAVPD-GLLHWKVADTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ AL+ + A + NN IGVPLTL + E+GM GEI L+ Sbjct: 124 RELIRSALAPLGDVQASDSNNNNDIGVPLTLLGAHRSHAAVVVEMGMRGAGEIERLSCCA 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IAVIT I AH+ IASAK EI L G + + D+ E ++ Sbjct: 184 EPEIAVITNIGTAHIGRLGSRAAIASAKCEITAALSPRGVVVIPAGDALLEDALSRCWTG 243 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I + G D S + L Sbjct: 244 RILRVSLEG-----DEPEGGPDVSGLTSAALPAPDLVGVFQPEDQSLAFQGLRFRCPLEG 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA---NPASMKAAISV 359 + A + P L + + A+ Sbjct: 299 RHNARNFMLALAVASELEVPLHSLEAMDVAMPGGRNKRLSMGGVSLLDETYNASPEAVLA 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDA 417 ++ H GRR AVLG M E+G S H +A+ + + + G ++ Sbjct: 359 ALELLAHQPGRRFAVLGTMLELGSRSVELHRRVAQRAVDLKLDGLVVVAGGDEGDVMEAT 418 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +T + L ++ L GD V++K+S RLI +L Sbjct: 419 ACSLSRFTRVQTPEDAALPLRGWLKPGDTVLLKASRGVALERLIPVLR 466 >gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 483 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 128/490 (26%), Positives = 208/490 (42%), Gaps = 34/490 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T L +AI + G DSR ++ + F A+ G + DGH F+ Sbjct: 1 MIDM-TLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGS 57 Query: 60 AVQKGAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109 ++G + +V+ D + + V V D AL +LA A + +A Sbjct: 58 VARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQAR 117 Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 +I ITGS GKTTTK++ LS+ T A + S+NN +G+PLT+ V + Sbjct: 118 GGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTE 177 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+G S G+I +LT + +A++ + AHL ++S +E +A+ KA I E L +G Sbjct: 178 YLVLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280 LN DD E + ++ + F KN ++ + + + S Sbjct: 238 MAILNADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGS 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G H N L I + LS P + Sbjct: 294 APVQLQLLGAHHVTNALAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD-- 351 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID++YNANP S++AA+ V++ R + VLGDM E+GE S H ++ + Sbjct: 352 LIDDAYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLG 409 Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 IS + G + AL R H +Q + GD+++VK S+ G Sbjct: 410 ISVLLTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGL 469 Query: 458 YRLINLLLEE 467 ++L + E Sbjct: 470 WKLAQEIEER 479 >gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 483 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 127/490 (25%), Positives = 208/490 (42%), Gaps = 34/490 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T L +AI + G DSR ++ + F A+ G + DGH F+ Sbjct: 1 MIDM-TLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGS 57 Query: 60 AVQKGAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109 ++G + +V+ D + + V V D AL +LA A + +A Sbjct: 58 VARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQAR 117 Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 +I ITGS GKTTTK++ LS+ T A + S+NN +G+PLT+ V + Sbjct: 118 GGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTE 177 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+G S G+I +LT + +A++ + AHL ++S +E +A+ KA I E L +G Sbjct: 178 YLVLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280 LN DD E + ++ + F KN ++ + + + S Sbjct: 238 MAILNADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGS 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G H N + I + LS P + Sbjct: 294 APVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD-- 351 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID++YNANP S++AA+ V++ R + VLGDM E+GE S H ++ + Sbjct: 352 LIDDAYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLG 409 Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 IS + G + AL R H +Q + GD+++VK S+ G Sbjct: 410 ISVLLTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGL 469 Query: 458 YRLINLLLEE 467 ++L + E Sbjct: 470 WKLAQEIEER 479 >gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 7169] gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC1] Length = 494 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QA QG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + +P V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 A+ S F + ++ Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ + + T + ++ ++ + K L+ Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454 +L I HV G H+ A+ + + L ++ L G V+ K S Sbjct: 420 ALLEIDHVLTLGNHMAHTATAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRG 479 Query: 455 CGFYRLINLLLE 466 LI L Sbjct: 480 MAMESLIADLTA 491 >gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 193/466 (41%), Gaps = 22/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + + G G +D R P F A G H DGHD+ A Sbjct: 1 MIPL-SLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 Q GA V+ + ++P V+D AL LA RLR + T++ +TGS G Sbjct: 60 GQAGAVAVLGSRP-------TALPTVVVEDARTALQALAADVVARLRERLTLVGVTGSQG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++L LSS T A G+ NN +GVPLT+ R F + E+G +G++ L Sbjct: 113 KTSTKDLLAAVLSSAAPTIATKGNLNNELGVPLTMLRAGAATRFLVVEMGARRIGDLAKL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV +AV+ + AHL F IA K E+ GL GT LN DD +++ Sbjct: 173 TDLVPLDVAVVLNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGTAILNADDPRVVAMRSL 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG +++AD ++R + V I Sbjct: 233 TDGPVL----TFGHAEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAA 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 ++ A A R TL+++SYNA+P S +AA+ Sbjct: 289 AAVAAALSAGLTLDAAAAPLATASLTRWRLELRDIAGGV--TLLNDSYNASPGSTRAALD 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ GRR+AVLG M E+G+ S++ H + E + V G V L A+ Sbjct: 347 A---LAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAAR-ADVVVTVGEAVRPL--AV 400 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +++ L GDVV+VK+S + L Sbjct: 401 GAGERAVAVADNGAAVDWLRGHLAPGDVVLVKASRGARLDEVAAAL 446 >gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] Length = 468 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 27/472 (5%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT L++A QG+ P+ + I DSR +AF A+KG +D H+F+ + K Sbjct: 14 WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNK 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V + L + V D AL +L R + + +IA+TGS GKTTT Sbjct: 74 GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + LV Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A I + AHL F G E I AK+EI+ + K GT + D F + ++ HA+ Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + SFG+ D + ++ + + EV G H QN Sbjct: 246 QTTQVLSFGE--GGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D + L + +GR ++ ID++YNANP SM+AA VL+ Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGRLNF----ISHKQHLFIDDTYNANPTSMRAAGEVLA- 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 G ++ V GD+ E+G+ + H L L +I+ + G A + Sbjct: 359 ---QQSGIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFLIAVGEFAPAALEGARSTQ 415 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 + T F+ S + + K S L+ L+E+ Sbjct: 416 YGKKMQAFLTQAQALPFLMSLVETHQPQSMSFLFKGSRYTHMETLMADLMEK 467 >gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] Length = 431 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 124/438 (28%), Positives = 197/438 (44%), Gaps = 21/438 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+S D+R I FFA+KGP++D ++F A+++GA LVV++ F Sbjct: 14 TGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVIDDP--KYFIEDDERYFL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D L L LA R + II +TGS GKTT+KE+L L + KT A +G+ NNHI Sbjct: 72 AKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL +P D + I E+G + G+I L + P IT I AHL G + Sbjct: 132 GVPLTLLSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFITNIGRAHLEGMGGPAGVL 191 Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+F+ GT+F+N D + + + K Sbjct: 192 KTKTELFQFLRANKGTVFINSQDPVLSNMAKRFDKPVLYPAKGDFCEVGFVEANPFVKFT 251 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 E + IG + N+ L + ++ AI+A+ + P R Sbjct: 252 VEGTEEVYL---------SSLIGAYNFGNIANALAVGKYFEVEMKGAIEAIVNYQPSNMR 302 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + N +I ++YNANP+SM+ AI +++ G+ ++ +LGDM E+GE ++ Sbjct: 303 SQLLEKRSN----LIILDAYNANPSSMEVAIRTFGEMT--GKKHKMIILGDMFELGEHAE 356 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H L E++S Y I V +G + AL R Y ++Q S ++ + Sbjct: 357 EEHAKLGEIISEYEIEKVCFTGKL---IVSALARYPKALYFPDPFSFRNWLQDSQLEDYL 413 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S L++ + Sbjct: 414 ILIKGSRGMKLEGLVDFI 431 >gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 193/466 (41%), Gaps = 22/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + + G G +D R P F A G H DGHD+ A Sbjct: 1 MIPL-SLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 Q GA V+ + ++P V+D AL LA RLR + T++ +TGS G Sbjct: 60 GQAGAVAVLGSRP-------TALPTVVVEDARTALQALAADVVARLRERLTLVGVTGSQG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++L LSS T A G+ NN +GVPLT+ R F + E+G +G++ L Sbjct: 113 KTSTKDLLAAVLSSAAPTIATKGNLNNELGVPLTMLRAGAATRFLVVEMGARRIGDLAKL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV +AV+ + AHL F IA K E+ GL GT LN DD +++ Sbjct: 173 TDLVPLDVAVVLNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGTAILNADDPRVVAMRSL 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG +++AD ++R + V I Sbjct: 233 TDGPVL----TFGHAEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAA 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 ++ A A R TL+++SYNA+P S +AA+ Sbjct: 289 AAVAAALSAGLTLDAAAATLATASLTRWRLELRDIAGGV--TLLNDSYNASPGSTRAALD 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ GRR+AVLG M E+G+ S++ H + E + V G V L A+ Sbjct: 347 A---LAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAAR-ADVVVTVGEAVRPL--AV 400 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +++ L GDVV+VK+S + L Sbjct: 401 GAGERAVAVADNGAAVDWLRGHLAPGDVVLVKASRGARLDEVAAAL 446 >gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 465 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 209/468 (44%), Gaps = 16/468 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + A+ G +G P V G + DSR + + A +G + DGH F+ A+++G Sbjct: 4 SAQWIADAVSGRLVG--PDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKT 120 A V+ ++ + + V+D AL LA A R R +IA+TGSVGKT Sbjct: 62 AVAVIAERELEEA-----VAQIIVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++L LS T A S+NN +G+PLT + + E+G S G I +LT Sbjct: 117 TTKDLLLQILSEDGPTVAPKLSFNNEVGLPLTALQADETTRHLVLEMGASGPGHISYLTD 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P +A+ + AH+ F G E +A+AKAE+ G G + LN DD E + Sbjct: 177 IVSPDVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAMAP-MA 235 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + G+ + ++++ + S V +G H N L Sbjct: 236 TGPIVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRGSAPVSLALVGRHHVSNALAAA 295 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASMKAAISV 359 L D+DT LS + + TLID+SYNAN SM+A I+ Sbjct: 296 AGALTLGMDLDTVAAVLSGARALSPHRMDVHDLDIEGTALTLIDDSYNANLDSMRAGIAA 355 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ I + RIAVLG+M E+GE S+S H + +++ + + G H + Sbjct: 356 LASI--GRDAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYLEGAS 413 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + +G VV+VK S +++ ++L E+ Sbjct: 414 GVANRTVASDPSDAARLVARFAEEGAVVLVKGSYGSQSWQVADILREK 461 >gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] Length = 471 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 186/467 (39%), Gaps = 19/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + I P V G + DSR P F A G DGHDF Sbjct: 1 MIAL-SLAEIAAVVGGQTHDIPDPSVQVTGPVVRDSREAVPGSLFVAFVGERVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +V V + + +P V+DV AL LA R AT++A+TGS G Sbjct: 60 -------AVVAAGAVAVLASRPVGVPAIVVEDVQAALGALARHVVNRLGATLVALTGSAG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK+++ L + T GS NN IG+PLT D F + E+G +G IR+L Sbjct: 113 KTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLTALSATEDTRFLVLEMGARGIGHIRYL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T L P + V+ + AH+ F G E+IA AK E+ E L + + L Sbjct: 173 TELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAEDG-GAAILNADDPLVRA 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + FG+S AD + + +L S Y Sbjct: 232 MASRTKAKVILFGESDEADVRAENVRLTDSGQ-PSFRLHTPSGASDVTMRLYGEHHVSNA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A ++ R T+++++YNANP SM+AA+ Sbjct: 291 LAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALR 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414 L + R AVLG M E+G+ + + H + + N+S + G L Sbjct: 351 ALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREASWLQLG 408 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + ++S L GDVV+VK+S S G + Sbjct: 409 AYNEGSWGEESVHVSDAQAAIDLLRSELRPGDVVLVKASRSVGLEGV 455 >gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Parabacteroides distasonis ATCC 8503] gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Parabacteroides distasonis ATCC 8503] Length = 427 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 116/447 (25%), Positives = 198/447 (44%), Gaps = 33/447 (7%) Query: 24 QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 F++ I+ DSR+ FFA+KG +DG+ + A+ G V++ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD+VL L +LA R II ITG+ GKTTTKE+L LS+ G Sbjct: 64 GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NNHIGVPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257 E + K E+++ + ++ ++ + + ++ G+ + D Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L + QGK V H IG + N+L + + + +A+ Sbjct: 244 PFL----------VFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + + P R + + N+ LI ++YNANP+SMK A+ + + +LGD Sbjct: 294 AAYEPTNNRSQFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S H ++ + V+L G H + T + + + Sbjct: 347 MRELGPTSDELHAEVVAQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMVEEL 400 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + G +++K S+S G +L ++L Sbjct: 401 RKQPLKGYHILIKGSHSMGLEKLADIL 427 >gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacter tundripaludum SV96] gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylobacter tundripaludum SV96] Length = 519 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 127/530 (23%), Positives = 218/530 (41%), Gaps = 75/530 (14%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD-------- 52 MN + ++ +QG +G ++ +SID+R+I P + + AIKG ++D Sbjct: 1 MNMM--LSEIAACVQGKLVG--EDVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEA 56 Query: 53 ---------------------GHD-------FILH------AVQ---------------- 62 GHD F A+ Sbjct: 57 EQAGAVAAIVHQGITATAIDGGHDCSRQSSAFPPSMEVRSVAISTTAWKQDDCKDAGGRA 116 Query: 63 -KGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 +GA V + + +IP VDD AL +LA R ++ +++ ITGS GK Sbjct: 117 TQGAVAEVEQRMEQLPRELMRPTIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGSNGK 176 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEM+ LS T G+ NN IGVPLTL R+ + + E+G +H GEI + + Sbjct: 177 TTVKEMVAAILSVNADTLFTQGNLNNDIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTS 236 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +A+IT + AH+ F I+ +A AK EI + L++ G LN DD++F+ K+ Sbjct: 237 QYAQADVAIITNVGAAHIEGFGSIDGVAKAKGEIIQTLKQDGVAVLNRDDAYFDYWKSI- 295 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQNMLM 298 G + + SFG + AD K + + + N++ Sbjct: 296 --AGTRKVISFGIDERADVTAHSVKTEIINHAFATTFELVTAKGELTVKLKLAGRHNVVN 353 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + A + + R + +++ +ID++YNAN AS+KA + Sbjct: 354 ALAAATACLALDTDLQQIKQGLESVKPVTGRLQPLVSRLGNIVIDDTYNANSASLKAGLD 413 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 VL+ + +G+R VLG E+G S H + E++ + + G Sbjct: 414 VLA----NCDGKRWLVLGAFGELGPDSPKIHEQMGELIKSSGVVRLLAVGSDAGNTVKIF 469 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + +T + L ++ L + +++K S + ++ L+E F Sbjct: 470 GEG--ATFFDTQNDLIEMLKQELKGDEAILIKGSRAQRMENVVAALVENF 517 >gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] Length = 494 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 195/492 (39%), Gaps = 39/492 (7%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QA QG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + +P V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 A+ S F + ++ Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ + + T + ++ ++ + K L+ Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454 +L I HV G H+ A+ + + L + L G V+ K S Sbjct: 420 ALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLCQLLSHGSATVLFKGSRG 479 Query: 455 CGFYRLINLLLE 466 LI L Sbjct: 480 MAMESLIADLTA 491 >gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] Length = 468 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 132/474 (27%), Positives = 203/474 (42%), Gaps = 27/474 (5%) Query: 3 PLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 W L QA QG+ P+G + I DSR +AF A+KG +D HDF+ V Sbjct: 12 APWDASQLQQATQGYWHNNRQPEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVV 71 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120 Q+G + +V + + I V D AL L R + K +IA+TGS GKT Sbjct: 72 QQGCQVAIVEQPL-----DVDIFQLIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKT 126 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + Sbjct: 127 TTKEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELRPEHQYAVMELGASHQGEIDYTSK 186 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+PH+A I I AHL F G + I AK+EI++ + GT L DD F + +K Sbjct: 187 LVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYQHIAVDGTAILPADDDFTDQIKQAIQ 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + G+ ++ S ++ + G H QN L Sbjct: 247 TQKMLSFGQDGE-----IYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAAT 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + D++ ++ LS +GR + G ID++YNANP SM Sbjct: 302 AFALAIGIDLNNIVQGLSAAQGAKGRLNFIQ----HGHHLFIDDTYNANPGSM----RAA 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G ++ V GD+ E+G+ S H L L+ + ++ G A++ Sbjct: 354 AGVLAQQTGIKVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIVAVGEFAGAMQQGAAS 413 Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 S H + T F+ + + K S L+ L+E+ Sbjct: 414 SDHPEKLKAFTTQAQALPFLIELIQQHQPQSMSFLFKGSRYTHMETLMADLMEK 467 >gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] Length = 509 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 131/514 (25%), Positives = 207/514 (40%), Gaps = 58/514 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + D+ G P V G + DSR + F A+ G DGHDF Sbjct: 1 MIPL-SIGDIAAITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94 A+++GA V+ + +P V V+GA Sbjct: 60 KAIEQGAVAVLAARP-------VGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGA 112 Query: 95 LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L+ LA R I+ +TGS GKT+TK++L + +T A GS+NN +G+P Sbjct: 113 LSNLAREVTSRLAAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLP 172 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R F + E+ +G IR LT + P + V+ + AHL F E IA AK Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232 Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 E+ E L G LN DD F + ++ A + + ++ +A + + Sbjct: 233 GELIEALPAAADGGVAVLNADDPFVASMAPRTQAKVVYYSANRPQAADAQYYATDIELDD 292 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + Q + + + V+ + A ++ + Sbjct: 293 VARPSFTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPTVAARALSGHQTSSA 352 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386 R + T+ID+SYNANP SM AAI+ L+ + + R IAVLG+M E+G + Sbjct: 353 HRMDVRTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAV 412 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLV- 442 H L VLS Y+++H+ G A+ +A I ++ +++ L Sbjct: 413 EAHRILGSVLSKYHVNHLVAVGEGAHTVAMVEAAHAHGIQTELCPDIEAATAAVENILRV 472 Query: 443 ------------DGDVVVVKSSNSCGFYRLINLL 464 DVV+VKSSN+ +R+ L Sbjct: 473 APAGVEDWSARAAKDVVLVKSSNAQRLWRVAEQL 506 >gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] Length = 486 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 172/476 (36%), Positives = 239/476 (50%), Gaps = 26/476 (5%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LW + A G + +G+ +DSR + P + F A+KG DGH FI A Sbjct: 22 ALWDAQSIASATGGTASHAFQA---SGVEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFA 78 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA + + + P V D AL+ LA AAR R A IA+TGSVGKT Sbjct: 79 KGAVAAITDRP-------VDFPHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGV 131 Query: 123 KEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE + +L + + + SYNNH+GVPL+LARMP FG+FE+GM+H GEI L+ Sbjct: 132 KEAIFASLDRASRGAAHRSVRSYNNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAPLSD 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 VRPH+A+ITTIAPAH+ N +E IA KA+IF GL GT + D + + + Sbjct: 192 HVRPHVALITTIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAK 251 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 ALG+ + +FG+S++AD +L + S + L + G H N L Sbjct: 252 ALGV-NVVTFGRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGV 310 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + V D+ +A AL+ +GRG R+ G L+DESYNANPASM+A + Sbjct: 311 IAAVRAAGGDLASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRA 370 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q H R+AVLG M E+G+ + FH +AE L+ I HV L G + AL L Sbjct: 371 LGQTPAHR---RVAVLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELG 427 Query: 420 R--------SIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLE 466 R + ++ ++ L GD V+VK SNS G RL+ + Sbjct: 428 RMPANSLGFAPSFAQCDSPAEAIAALEEYGLTHGDAVLVKGSNSVGLGRLVQHFTK 483 >gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio harveyi ATCC BAA-1116] gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116] Length = 454 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 202/472 (42%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + G +G + +S D+RSI F A+ G +D HDF A Sbjct: 1 MITV-TLSQIADITGGERVGN--DLSIESVSTDTRSIEQGALFVALVGERFDAHDFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GAG ++V + ++ + + D AL ++A + +AITGS GKT Sbjct: 58 VESGAGALLVQKRVNVNVPQVVV-----GDSKVALGQVAAWVHQTCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL G +N D + Sbjct: 173 LVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGGAKWDEVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T + +ADF + + + + +G N+ + Sbjct: 233 DKNVIT--FSQSNADADFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I T + S R LID+SYNA+ +MKAA+ +L Sbjct: 291 AASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 AAF----QGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ET + +I+ L + ++VK +N + + L E + Sbjct: 404 -CDGIHFETHQEMIDYIKQHLDQAVPEHHTMLVKGANGARMFEVAAALKEYY 454 >gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 483 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 127/490 (25%), Positives = 208/490 (42%), Gaps = 34/490 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T L +AI + G DSR ++ + F A+ G + DGH F+ Sbjct: 1 MIDM-TLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGS 57 Query: 60 AVQKGAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109 ++G + +V+ D + + V V D AL +LA A + +A Sbjct: 58 VARRGGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQAR 117 Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 +I ITGS GKTTTK++ LS+ T A + S+NN +G+PLT+ V + Sbjct: 118 GGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTE 177 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+G S G+I +LT + +A++ + AHL ++S +E +A+ KA I E L +G Sbjct: 178 YLVLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280 LN DD E + ++ + F KN ++ + + + S Sbjct: 238 MAILNADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGS 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G H N + I + LS P + Sbjct: 294 APVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD-- 351 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID++YNANP S++AA+ V++ R + VLGDM E+GE S H ++ + Sbjct: 352 LIDDAYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLG 409 Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 IS + G + AL R H +Q + GD+++VK S+ G Sbjct: 410 ISVLLTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGL 469 Query: 458 YRLINLLLEE 467 ++L + E Sbjct: 470 WKLAQEIEER 479 >gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152] gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152] Length = 418 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 206/436 (47%), Gaps = 33/436 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R+I FFA+KG +++G+ F A++ GA +V+ ++ + + + V Sbjct: 16 VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEVYQTQDA----IILVP 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L +LA R + KATII +TGS GKTTTKE++ LS KT A G+ NNHIGV Sbjct: 72 NVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL MP+D + GI E+G +H EI FL+ + P IT AHL F G+E + Sbjct: 132 PLTLLSMPIDTEMGIVEMGANHQKEIEFLSSICEPDFGYITNFGKAHLEGFGGVEGVIKG 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E++ LE+ I D ++ K K+ ++ Sbjct: 192 KSELYHFLEQNNKIAFINPDDKIQVDKTKNITTIPFL----------------PSIALKE 235 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + VQL ++ + + IG + N+ + + I + D +A+ + R Sbjct: 236 ANPFVQLSYDNLVINSNLIGTYNYTNIAIAITIGNYFKVKDDVIKEAIEGYESTNNRS-- 293 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 +NQ +I ++YNANP+SMK A+ + +I +LGDM E+G+ H Sbjct: 294 --QIINQNSNVIILDAYNANPSSMKVALENFHALKAD---HKIVILGDMFELGDARLEEH 348 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + + N + + G H K+ + + +T D ++++ +++ Sbjct: 349 QQIVNMATQMNFNGYYFVGEHFYQTKE------NENLFKTFDDFKNDFENNIPSNSSILI 402 Query: 450 KSSNSCGFYRLINLLL 465 K S R++ LL Sbjct: 403 KGSRGMRLERVVELLK 418 >gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis CO72] Length = 494 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 133/489 (27%), Positives = 197/489 (40%), Gaps = 39/489 (7%) Query: 8 HDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L QA QG + + + I D+R I + F AIKG +D HDFI +A Q+GA Sbjct: 12 DNLKQATQGQWHHSDKAEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGAS 71 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEM 125 +V + +P V D AL L R T+IA+TGS GKTTTKEM Sbjct: 72 AAIVER-----VVDCDMPQLLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEM 126 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +VRP Sbjct: 127 IGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPD 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK------- 238 +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASKFTNL 246 Query: 239 -------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 A+ S F + ++ Sbjct: 247 YLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDI 306 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + ++ + + T + ++ ++ + K L + Sbjct: 307 DQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLPMDGY 366 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L+L Sbjct: 367 CIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQLALL 422 Query: 400 NISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGF 457 I HV G H+ A+ + + L ++ L G V+ K S Sbjct: 423 EIDHVLTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRGMAM 482 Query: 458 YRLINLLLE 466 LI +L Sbjct: 483 ESLIAVLTA 491 >gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Myxococcus xanthus DK 1622] gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Myxococcus xanthus DK 1622] Length = 466 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 137/465 (29%), Positives = 207/465 (44%), Gaps = 10/465 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ +++QA G + D+R++ P F A+ G +D H F+ A Sbjct: 1 MAASFSDEEVVQATGATRRGGPAPAAYATVCTDTRALTPGCLFVALVGERFDAHAFVDAA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VV + ++ VDD L AL L R R + + A+ GS GKT Sbjct: 61 AKGGAAGAVVARGRPLPALPDGLTLYEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ L++ G+ NN IGVPLTL R+ + E+GM+ GEI L Sbjct: 121 TTKEMVGAILATRGPALKTEGNLNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLAR 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+P VIT + P HL IE +A+A+ E+F+ + TI +N D + L Sbjct: 181 VVQPDAGVITVVQPEHLEGLGSIEGVAAAEGELFQEMGHGTTIVVNVD----DALIPAQA 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +FG++++AD +L K E V+ G+ V H +G H AQN Sbjct: 237 ERSGAQRLTFGRAEHADVRLADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAA 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + ++ L P R Q T+ID+ YNANPASM AA+ Sbjct: 297 FAVALALGYTPEECVRGLESARPYSRRLN---VVDGQHGVTVIDDCYNANPASMDAALET 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + P GR + VLGDM E+G H L + + + G L +A Sbjct: 354 LGTLVPAS-GRAVVVLGDMLELGPGELEEHARLGGQIPSHAALAAF-FGPRSLKGWEAAS 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++ L ++ L +GDVV+VK S R++ L Sbjct: 412 MGESAAHFTDVEPLMAWLAPRLREGDVVLVKGSRGMRLERVVAAL 456 >gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] Length = 466 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 195/464 (42%), Gaps = 14/464 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++L A +G + + IDSR+++P F I G DGH+F + AV K Sbjct: 3 LTLSEILAATGAVGDVGERGNPDIEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + + PV V D + AL KLA A R R++A ++A++GS GKTT K Sbjct: 63 GAAAVLADRPLAG--LPEGTPVLLVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+ L+ + T ++NN IG+PL++ + ELG+S GE+ L + Sbjct: 121 ELTAAILAKVGPTAKNFKNFNNKIGLPLSMLEAGETDRLWVMELGISAPGEMAPLAAIAE 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVI + PAHL + +A+ K+ +F + EL A Sbjct: 181 PDVAVIHNVGPAHLEALIDVAGVAAEKSRLFA--ALRPGGVALASMDYPELWAAAKAVRP 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S + ++L G +EVV G H A+N+L Sbjct: 239 DVRGMSVKGGSAPYRAKYLGALSEGRGRFFLRLDGLELEVVTPLTGGHFAENILAAAASA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L A + L E R R G +TLID++YNANP S ++ + Sbjct: 299 RLLGATEEQIATGLESAVMPEQRFFCRR----HGCYTLIDDTYNANPLS--MRRAIATAA 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + VLG+M EMG ++ H L E + V+ G H A+ + L R + Sbjct: 353 EAAQGKPLVLVLGEMREMGAQAEDEHHKLGEEAAASGAKAVFYHGGHAQAVGEGLARKGY 412 Query: 424 V---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +T + + S+ + G V + K S S + L Sbjct: 413 AGLFAVVDTPEMFTQTVASAGLRGGVYLFKGSRSMRMEEYLAAL 456 >gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC8] Length = 496 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 137/495 (27%), Positives = 200/495 (40%), Gaps = 43/495 (8%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QA QG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + +P V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L ++ Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 243 GIKTIYSFGKS--------------------------KNADFQLRKWKQCSEQSWMEVQL 276 K SFG+ D + + S + Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302 Query: 277 Q---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + ++ + + T + ++ ++ + K Sbjct: 303 NIDIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMR 362 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 L+ + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L Sbjct: 363 LSMDGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLG 418 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKS 451 L+L I HV G H+ A+ + + L ++ L G V+ K Sbjct: 419 HQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKG 478 Query: 452 SNSCGFYRLINLLLE 466 S LI L Sbjct: 479 SRGMAMESLIADLTA 493 >gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bryantii B14] gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bryantii B14] Length = 434 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 118/436 (27%), Positives = 195/436 (44%), Gaps = 18/436 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A++KG +++ A G D Sbjct: 16 VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEKEYAVEGDS--RYILTD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L +LA R + +I ITG+ GKTTTKE+++ LS G++NN IGV Sbjct: 74 NTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNNDIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 134 PKTLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNVGRAHLLGFGSFEGVKKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSE 268 K E+++ L + + + L I + ++G+ ++A+ Q Sbjct: 194 KGELYDFLAENDALVF--LNESNPHLVKMVQQRNINRVITYGQDEDANIQGEVLSCAPFL 251 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + + + EV IG + NML + I D AL + P R + Sbjct: 252 KFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITIGLHFGVDPVQINHALENYCPSNNRSQ 311 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 N+ LI ++YNANP+SM AA+ ++ + +A+LGDM E+G +S + Sbjct: 312 LTVTENNK----LIVDAYNANPSSMAAALENFKVMAVSPK---MAILGDMRELGNVSDAE 364 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H +A++L NI VWL G + + +D + I+ + G ++ Sbjct: 365 HQKIADMLKECNIDKVWLVGEEFEKT------NCNFTKFHNVDEVKEAIRQENLSGYYIL 418 Query: 449 VKSSNSCGFYRLINLL 464 +K SN ++L LL Sbjct: 419 IKGSNGIKLFQLPELL 434 >gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase D-alanyl-D-alanine-adding enzyme; D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 459 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 200/473 (42%), Gaps = 26/473 (5%) Query: 1 MNPLW--TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + + +L + P IS S+ I F ++G DGH++I Sbjct: 1 MIAPFEYSLSTILSLFSLKPVWENPMNPKFFWISTSSKEIQKNTLFVPLRGER-DGHEYI 59 Query: 58 LHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 A++ GA + + V D L AL LA R R +IAIT Sbjct: 60 ADALKAGATGFLCEKNHPILKNLSNEDQKKAIFVKDTLIALGTLANFHRNRFCPIVIAIT 119 Query: 115 GSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 GS GKT+TK++L + K +YNN IGVP TL R+ I E+GM+H Sbjct: 120 GSSGKTSTKDLLGGLFSFLGSKSLVVTEKNYNNEIGVPFTLFRITERTQVVICEMGMNHR 179 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L+ + P A+IT I AH+ N E IA K +I GL G +F+ D F Sbjct: 180 GEINRLSKMAEPTHALITNIGSAHIENLKSRENIAEEKIDIINGLRPNGVLFVPDDLDFL 239 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 K ++ + + ++ K + E VQ G +E I +++ Sbjct: 240 GRAKQRTKKSNV------------NLKIWKHSKNPELKVNIVQKNGFLLEWRMEKIQWNI 287 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + L++ I + + + R + +GF+T+ID+SYNANP S Sbjct: 288 PGSKLLSNVRGMIAVGNFFQIPDVEMKKTIRTYKSPNKRLNIKKGFYTIIDDSYNANPES 347 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M ++I Q + + + VLG M E+G+ S+ +H ++ + L Y + G L Sbjct: 348 MLSSIDASIQYAQNKP--IVWVLGTMKELGKFSKFYHEEIGKNLKKYPKGTLLGFGDDTL 405 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + ++ L FI+ + V++VK S S +++ L+ Sbjct: 406 PMVKQVSNGK---HFQSKVDLVEFIKKEIPKQAVILVKGSRSMKMEEIVSELV 455 >gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] Length = 453 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + +G ++ +S DSR+I + F A+ G +D HDF A Sbjct: 1 MIRVM-LSQLCSVLNARLVG--ADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V ++ A V D A+ +L + + +AITGS GKT Sbjct: 58 VTGGAVALLVQRELEA-----DCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS + G++NN IGVPLTL R + + + ELG +H+GEI + T Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL + +N D + E KA Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKAVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +KT NADF R + + + + ++V IG H N L Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFILVTPIGEVDVELGIIGQHNVGNALAA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A + L+ +GR + + LID+SYNA+ +MKAA+ + Sbjct: 291 AALSLEMGASLAEVRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L S R +LG+M E+G+ S + H + E + + V G + D Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401 Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468 H+ T + FI+ + G V++VK +NS G ++ L E+F Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452 >gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] Length = 508 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 123/498 (24%), Positives = 193/498 (38%), Gaps = 34/498 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ + G + + V DSR I F A+ G DGHDFI Sbjct: 1 MIAL-TAAEIAHIVGGELVHVDDDATVTQPAEFDSRKIREGSLFLALPGARVDGHDFIDQ 59 Query: 60 AV-----------QKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAA- 102 AV G VVV + S + D VL AL KLA Sbjct: 60 AVAAGATMALAARDVGQPAVVV--KPLGKQDSNADAFAHDPDGSGAAVLEALGKLARYVV 117 Query: 103 --RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 + + ++ +TGS GKT+TK+M+ L + T A GS+NN IG P T+ + + Sbjct: 118 DELKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGPTVAPKGSFNNEIGHPYTVLQCTPET 177 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGL 217 + + E+ +G + L + P I + + AHL F E IA AK E+ Sbjct: 178 KYLVAEMSARGIGHVAHLARIAPPTIGAVLNVGTAHLGEFGSREVIAQAKGELVEALPAA 237 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 E+ G LN DD + + ++ A + S + AD++ + Sbjct: 238 EQGGVAVLNADDDYVTGMAPRTQAKVVFFSADESSERHATADYRATNVQLDDFARASFDL 297 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 Y Q I + + +D A ++ +R Sbjct: 298 HVPDGRTFPIQLQVYGAHQVANALAAIAVAVESGIDAEQVAKAMAAHVAASERRMDVQQL 357 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G +I++SYNANP SM+A I L++ H + AVLG M E+G+ ++ H L Sbjct: 358 TGNIVVINDSYNANPDSMRAGIDALARTAAGPTHQDASSWAVLGQMGELGDSAEDEHSSL 417 Query: 393 AEVLSLYNISHVWLSGFHV--LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 E L I + G AL D ++ + + + DVV+V Sbjct: 418 GEYLVGRGIDRLIAVGESSNVHALADKAEELGLNTSRVPDTSTAADLVAAEVRPDDVVLV 477 Query: 450 KSSNSCGFYRLINLLLEE 467 K+S + G +R+ + L + Sbjct: 478 KASYADGMWRVADSLAAK 495 >gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] Length = 457 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 198/458 (43%), Gaps = 16/458 (3%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 I G ++ + +S DSRS P + F A+KG +D HDF+ +GA +V+ Sbjct: 2 IPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS 61 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 ++P V D AL LA R+R ++A+TGS GKTT KEM+ ++ Sbjct: 62 PAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA 117 Query: 134 KKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +A G++NN +G+PLTL R+ + ELGM+H GE L + P +A++ Sbjct: 118 VGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVN 177 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 H + +E +A A + L G DD++ + + A I F Sbjct: 178 NAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR---VAATGNRIVDF 234 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 A + S + + G ++V + +G H A+N L + Sbjct: 235 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 294 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 L F P +GR + R A T+ID++YNANP SM+AAI VL+ S Sbjct: 295 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSA---- 350 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R+ V+G+M E+G+ +FH ++ I ++ G DA H+ + Sbjct: 351 PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDA 409 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++ ++VK S R+++ L E Sbjct: 410 AALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 447 >gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bergensis DSM 17361] gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bergensis DSM 17361] Length = 458 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 122/441 (27%), Positives = 192/441 (43%), Gaps = 22/441 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +DG+ F A+ KG V++ + VD Sbjct: 34 VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEK--EYDDEADDRIILVD 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTTTKE+L+ LS G++NN +GV Sbjct: 92 DCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNNDVGV 151 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ D + E+G SH+G+I+ L V P +IT + AHL F E + A Sbjct: 152 PKTLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNVGRAHLQGFGSFEGVMQA 211 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK------SKNADFQLRKW 263 K E+++ L+ + E L +H ++ I S+G+ Sbjct: 212 KGELYDYLKACHAPVFLNTSN--EHLVDMAHQRRLERIISYGQDDGAQVWGEVMSCDPFL 269 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K S E EV H +G + N+L + + + +AL + P Sbjct: 270 KLQWGASHAEHHSPTSMQEVSTHLVGAYNLDNVLAAITVGLHFGVSEEQIRQALESYTPS 329 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + + N LI ++YNANP SM AAI ++S A+LGDM E+GE Sbjct: 330 NNRSQFVETSRN----RLIIDAYNANPTSMAAAIDNFERMSMTQPRM--AILGDMRELGE 383 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 +S+ H +A+ L +I +WL G + S + ++ + + + Sbjct: 384 VSEEEHQKIADSLKASDIDTIWLVG------GEFAKTSCKFRKFKDVEEVKAALATEQPS 437 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 G ++VK SN +L L Sbjct: 438 GYCILVKGSNGMHLSQLTTEL 458 >gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13] gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13] Length = 427 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 33/447 (7%) Query: 24 QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 F++ I+ DSR+ FFA+KG +DG+ + A+ G V++ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 VD+VL L +LA R II ITG+ GKTTTKE+L LS+ G Sbjct: 64 GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NNHIGVPLTL R+ D + + E+G SH G+I+ L +V P+ +IT + AHL F Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257 E + K E+++ + ++ ++ + + ++ G+ + D Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 L + QGK V H IG + N+L + + + +A+ Sbjct: 244 PFL----------VFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + + P R + + N+ LI ++YNANP+SMK A+ + + +LGD Sbjct: 294 AAYEPTNNRSQFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G S H ++ E + V+L G H + T + + + Sbjct: 347 MRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMTEEL 400 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + G +++K S+S G +L ++L Sbjct: 401 RRQPLKGYHILIKGSHSMGLEKLADIL 427 >gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum aromaticum EbN1] gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum aromaticum EbN1] Length = 466 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 196/469 (41%), Gaps = 25/469 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H+ QA+ + G + + DSR I + F A++G +DGH+F++ A G Sbjct: 1 MTLHEAAQALG---VVATMPGNFSSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADG 57 Query: 65 AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A +V+ + +P+ V+D AL +LA R R + +I +TGS GKTT K Sbjct: 58 AAAALVDARWAGTQPVPSPLPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVK 117 Query: 124 EMLTIALSSIKKTYACIG--------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 EM T L + + + NN IG+PLTL + I E+GM+ GEI Sbjct: 118 EMCTAVLRAQARRDGHGAEAVLATAGNLNNDIGLPLTLLELRSSHRAAIVEMGMNRPGEI 177 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +L L RP +AV+T AHL + IA K I+E L G +N DD+ Sbjct: 178 AYLAGLARPTVAVVTNAQRAHLQGMGTVIGIAREKGAIYEALGPDGVAVINADDTQAGYW 237 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + A F + AD + S + + + V G H A+N Sbjct: 238 RELNAARRTLV---FSLTPRAD-VAGECTLRGLGSHLVMTTPAGRIAVDLQVPGEHNARN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 A + + L+ + GR + ++D+SYNANP S++A Sbjct: 294 ATGAAAACLAAGASPEAVAEGLAAYTGTRGR---LQRRAGPNGAVVLDDSYNANPDSLRA 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+ G++I VLGDM E+G S H ++ + ++ G Sbjct: 351 GIDVLAATP----GQKILVLGDMGEIGWTSAQVHDEIGGYAKSKGVDALFALGEMSAVAA 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ +++ L + L VV+VK S R+ + L Sbjct: 407 SNFGGG--GHHFASVEALVAALTRKLDGDTVVLVKGSRFMRMERVADAL 453 >gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2 Length = 454 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 193/472 (40%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + L LS+ KTY G+YNN IG+P T+ P + + E G HLG+I L+ L R Sbjct: 116 DXLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHXPEGTEKLVLEXGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGXASGSLLLAPADPIVEDYL------PI 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N + + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAXIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP + K + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAXKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL D E+G+ S H LS + V G + L + Sbjct: 343 PANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQLASQXFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV+Y + + L ++ SL D +++K SNS +L+ L Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSXNLAKLVESLEN 454 >gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 466 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 114/442 (25%), Positives = 193/442 (43%), Gaps = 8/442 (1%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR+I F + G +DGH F+ +KG ++ D +I + + VD Sbjct: 30 VCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFISKDCNLAIPEE-LLYWQVD 88 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D A KLA R ++A+TGS GKTTT+E++ +L + + A + NN IGV Sbjct: 89 DTQEAYQKLAFLHRRLFSIPVVAVTGSAGKTTTRELIHSSLVPLGEVLATSNNNNNDIGV 148 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + V+ + E+ M LG+I L+ P IAVIT I +H+ + IASA Sbjct: 149 PFTLLKANVNHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQNIASA 208 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI + G + + D E + I + KS Q + Sbjct: 209 KCEIAAHMNPNGFVIIPAGDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQTKKN 268 Query: 270 SWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 L + ++ + I Q + + L + + S+ + Sbjct: 269 VDYLGVLDSDNWQITYDGIIFQMPLQGRHNAINFMFALAVAYELNVPLDSIRNLSVNLPP 328 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +L G ++DE+YNA+P S+ A++ +L+ GR AVLG+M E+GE + + Sbjct: 329 GRNHSLTFGNINVLDETYNASPESVIASLDLLAT----KPGRHFAVLGNMYELGEKTIDY 384 Query: 389 HIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + + ++ + + G A+ A ++ T + FL ++S L GD Sbjct: 385 HEQIVQHSIATGLTGLVICVNGPEAEAMLLAGQPLSYIEVVSTPEDAFLILKSWLNSGDY 444 Query: 447 VVVKSSNSCGFYRLINLLLEEF 468 +++K+S R++ LL E + Sbjct: 445 LLLKASRKVSLERILPLLKEAY 466 >gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 456 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 143/456 (31%), Positives = 220/456 (48%), Gaps = 17/456 (3%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 +A G +G +G+S DSRSIA E F A++G ++DGHD++ A +GA +V Sbjct: 7 ARATAGKVLG--ANATFSGVSTDSRSIAAGELFVALRGENFDGHDYVAAAKARGAAAAIV 64 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 TD + +LS+P+ V + +L LA R R ++A+TGS GKTTTKEM+ L Sbjct: 65 ATDAAEGLQALSLPLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASIL 124 Query: 131 SSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + G++NN IG+PLTL R+ I ELGM+H GEI +L + RP +A+ Sbjct: 125 KAAYGEAVLATQGNFNNDIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIARPTVAL 184 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T AHL+ +E IA+ K I+ GL++TG N DD + +L +++ L + Sbjct: 185 VTNAQRAHLAGMGSLEAIAAEKGSIYTGLDETGVAVFNADDPWAKLWRSQCRGL---RMM 241 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +FG + AD K+ +S + + +VV G H A+N L Sbjct: 242 TFGFEQAADVT-GKFHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALAAGI 300 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + LS F +GR + L+D++YNANP S++A I VL+ Sbjct: 301 SLTAVQAGLSAFRGLKGR---LQRRTALHGAVLLDDTYNANPDSVRAGIDVLAATI---- 353 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 G++I VLGDM E+GE+S FH ++ I + G H+ Sbjct: 354 GKKILVLGDMGEIGEMSAQFHDEIGGYAKSQGIDLLLALGEASALAAHNFGSGGEHHH-- 411 Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++D L + + L V+VK S R+ + L Sbjct: 412 SIDRLVASLTAELTPETTVLVKGSRFMRMERVADAL 447 >gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] Length = 462 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 220/469 (46%), Gaps = 22/469 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ F L + + +N I+ D+R++ E F A+KGP++DGH FI A Sbjct: 1 MIPM-DFDWLANVL-ATDYQGDNRKVIN-INTDTRTLCDGEVFLALKGPNFDGHKFIEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 QKGA V+V+ + I F V D AL + A + IAITGSVGKT Sbjct: 58 KQKGAIGVIVDHAV-----DTDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM LSS A G++NN IGVPLTL R+ F + ELG +H+GEI + T Sbjct: 113 TVKEMCAAILSSKGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHIGEIAYTTA 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +AV+ +A AHL F ++ +A AK EI++GL++ G +N D F + K Sbjct: 173 MTKPDVAVVCNVAAAHLEGFGSLQGVAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLDKLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 IK S K + ++ + + S+ V G H N L+ Sbjct: 233 TRNIKCFSSSEKLDI--WAEDISLDAQARASFTLCTKQHSVPVKLALPGKHNISNALIAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + S ++ AL+ +GR + T+ID++YNAN S+KAAI +L Sbjct: 291 ALTSEFDVSLEDIASALATMGEVKGRVNLIEAS---DSLTIIDDTYNANVKSVKAAIDLL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S I +G RI LGDM E+GE ++ +H ++ E I ++ G D Sbjct: 348 SDI----QGHRILALGDMGELGEDARKYHQEVGEYALAQGIDELFTLGVLSKCASDVF-- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466 + + + + IQ+S+ D +VVK S S L+ L+ Sbjct: 402 GLPNRHFSNREQMLQQIQNSISKVDKKITLVVKGSRSSRMELLVTDLVN 450 >gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 465 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 111/468 (23%), Positives = 191/468 (40%), Gaps = 13/468 (2%) Query: 6 TFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 TF DL++ + G I + IS DSR+I + F + G +D HD++ A Sbjct: 4 TFKDLIK-LWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAFD 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G VV+ + + +P + V D L A ++A+ R ++A+TGSVGKTTT Sbjct: 63 LGIQAAVVSEKYNG-LVPIGLPHWVVPDTLYAYQQIALLHRRNLNLPVVAVTGSVGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ LS + + + G+ NN IGVP TL + E+GM G+I L+ + Sbjct: 122 RELIRAILSPLGEIVSSRGNENNDIGVPKTLLSGSETDAAFVLEMGMRGFGQITRLSRVA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IAVIT + AH+ E IA AK+EI L G + + + D E + + Sbjct: 182 EPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVIIPFGDYILEKALLEKWSG 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTL 300 I + G S N + + + + + Sbjct: 242 RIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQIDMQNNFILFEGRKFKLPLEGRHNAM 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + LT + + + K ++ G + ++DE+YNA+P S+ A++ +L Sbjct: 302 NFLLALTVATELGLSIKKLDQLKINMPIGRNRLVDCGQYLVLDETYNASPESVIASLELL 361 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL 418 GR AVLG M E+G S H + + ++ + G +K + Sbjct: 362 ----VSKPGRHFAVLGTMLELGSESILLHQKVLKKAIELGLTGIVFVSCGEESNIIKKTI 417 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + L GD +++K S +++ L + Sbjct: 418 KELPNHDVVSNPKDAAMSLLPWLSPGDNILIKGSRKLELEKVLPYLQK 465 >gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] Length = 458 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 192/437 (43%), Gaps = 16/437 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + F ++G +DGH F+ A ++G VV D + S+ + VD Sbjct: 33 VCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDSDIPVPQ-SLLHWIVD 91 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A ++A R + ++AITGS GKTTT+E++ AL+ + A IG+ NN +GV Sbjct: 92 DTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQASIGNNNNDVGV 151 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + + E+GM GEI L+ P IAVIT I AH+ E IA+A Sbjct: 152 PLTLLGVDEQHAAVVVEMGMRGPGEIERLSRCAEPEIAVITNIGTAHIGRLGSREAIAAA 211 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K EI L G + + D + A+ + ++ + + +++ + Sbjct: 212 KCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVALVDDANDSEHVADDLGDYNPL 271 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G H A+N ++ + + L + K Sbjct: 272 TGRISLGN---DSYNCPLEGRHNARNFMLAIAVARTLGVAPADLV------QLKVEVPGG 322 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 G T++DE+YNA+P ++ AA+ +L+ GRR AVLG M E+G S H Sbjct: 323 RNRKRQIGSLTILDETYNASPEAVFAALDLLAAQP----GRRFAVLGTMLELGTDSVGLH 378 Query: 390 IDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + N+ + + G A+ DA R ET + + L GD V Sbjct: 379 RAVIDHAATLNLDGLVVVATGAEAKAMSDASSRWPQFQQVETPEQAAEPLIEWLRPGDTV 438 Query: 448 VVKSSNSCGFYRLINLL 464 ++K+S RL+ LL Sbjct: 439 LLKASRGIALERLLPLL 455 >gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 3_1_12] gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 432 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 115/435 (26%), Positives = 187/435 (42%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G VV+ A + I VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEAEYAPEDNKHI--ILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ L+ G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + D + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHDLAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L+ A G+ I ++ Sbjct: 194 KGELYDYLREKDDSTVFIHHDNVYLM---DIARGLNLIPYGSENSLYVNGHVTGNSPYLT 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G +V IG + N L + I + +AL+ + P+ R + Sbjct: 251 FEWKAGKDGNLHQVQTQLIGEYNFPNALAAVTIGRFFGVESSKIDEALAGYTPRNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N TLI ++YNANP SM AA+ ++ + + +LGDM E+G S + H Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVERK---MLILGDMRELGAESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + E L + V L G + L +Q+ G +++ Sbjct: 364 HKIVEYLQECSFEKVLLVGELF------ASTNPPYPTYANAQELIKDLQTENPQGYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN ++ L Sbjct: 418 KGSNGIKLSTVVEFL 432 >gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 485 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 113/485 (23%), Positives = 192/485 (39%), Gaps = 25/485 (5%) Query: 5 WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + D+ + G + + V G + DSR + P + A+ G +DG DF ++A+ Sbjct: 3 LSASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALD 62 Query: 63 KGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 GA ++V ++ + V+D A LA A R R ++IAITGS G Sbjct: 63 AGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK ++ L+ A G+ NN +GVP TL R D F + E+GM G+I L Sbjct: 123 KTTTKNLVRDVLARAGSVVATQGNQNNELGVPATLLRAEEDTQFVVVEMGMRGRGQIESL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 VRP +A++T + +H+ + IA AKAEI G++ I F + Sbjct: 183 CRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKANTGIAFINASDDFASMLPA 242 Query: 239 S-------------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 G + + +++ Sbjct: 243 YGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIELDEAGCARFTLHTPTGTAS 302 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + N+ ++ + +A + R R ++D++ Sbjct: 303 VHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATSLDGRGRVVRTASGVVVVDDA 362 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YNANP SMKA++ + + H GR IAVLGDM E+G+ ++ H + +++ I + Sbjct: 363 YNANPDSMKASLGSFAAM--HFAGRHIAVLGDMGELGDTAEEAHARIGSLVASLPIDLII 420 Query: 406 LSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 G + A + S + GD ++VK+S+S G ++ Sbjct: 421 CVGSLACGIARAAVAAGMPEDAAICVTDASAALDQVVSLVNAGDGILVKASHSVGLEAVV 480 Query: 462 NLLLE 466 L++ Sbjct: 481 KGLVK 485 >gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] Length = 467 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 198/475 (41%), Gaps = 30/475 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + Q + G IG V ++ D+R FFA+KG H+D H ++ A Sbjct: 1 MIKLTT-KQVAQILNGQLIG-DEYLVVETVNTDTRQAVENGLFFALKGNHFDAHHYVDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +G +VV M+ ++ P V D AL +LA + + IAITGS GKT Sbjct: 59 IAQGCIALVVEQRML-----INAPQIIVADTRLALGELAKWLKAKLNPKTIAITGSSGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSY----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM L + + NN +GVPLTL R+ F + ELG +HLGEI Sbjct: 114 TVKEMAAKILQKLTACADEVLYTSGNLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIA 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + +P V+ +A AHL F + +A AK EI+ GL G +N Sbjct: 174 YTTSITQPDACVVNNVAAAHLEGFGSLAGVAQAKGEIYRGLPPEGIAIINQASYSSAWQT 233 Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 S + +Y + K DF S + +E+ +G H N Sbjct: 234 EIGSRKVQSFALYPSAEHKPVDFSAENVHLHLNGSTFMLHSPQGEIEINLPYLGEHNVSN 293 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L +V + AD+ L +GR + LID++YNAN SMK+ Sbjct: 294 VLAASALVMAVGADLAAIKAGLEQPVAVKGRLC---PLPINRYCLLIDDTYNANVDSMKS 350 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ VL RI + DM E+G+ S + H ++A+ + + V G + Sbjct: 351 AVQVLKNYQA----FRIFAVADMGELGKDSVACHQEVADFVREAELDLVVSFGKESAVIS 406 Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464 + H+ + F+ Q +V++ K S S LI+ L Sbjct: 407 -----NQSTHHFTDKQAMHNFLMPIIMQKIAEKQPLVLLAKGSRSQKMETLISSL 456 >gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 4_1_36] gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 4_1_36] Length = 432 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 189/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++ DSR+ F A+KG ++G+ F A++ G+ +V+ + A G Sbjct: 14 TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDT--RYIV 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ L L +LA R + + II ITG+ GKTTTKE+++ LS +G+ NNHI Sbjct: 72 VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E I Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + + L K A G+ I + Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYL---KKIAYGLHQIAYGSEDGLYINGHVTGNSPY 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + K EV IG + N L + I + + KAL+ + P+ R Sbjct: 249 LTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM A+IS + + + +LGDM E+G+ S Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAENK---MLILGDMRELGKDSAD 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +A+ L V L G A + + L +Q G + Sbjct: 362 EHQKIADYLEECGFKDVVLVGELFAATRH------PYQSYPDVTALIAELQREKPCGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN + L Sbjct: 416 LIKGSNGIKLSSTVEYL 432 >gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria flavescens SK114] gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria flavescens SK114] Length = 438 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 128/448 (28%), Positives = 195/448 (43%), Gaps = 22/448 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ Sbjct: 3 SENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 V D L AL KLA A R + ITGS GKTT KEML L A Sbjct: 63 ----LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + P++A++ AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI+EGL G + +D+ +A + L +T D Sbjct: 179 CGFDGVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNAQTFGVAS----GD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + ++ + + VV G H N + + + L Sbjct: 235 IHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR + TLID++YNANP SMK AI VL+ + RI V+GD Sbjct: 295 KNFSNIKGRLNIKQGIKG---ATLIDDTYNANPDSMKVAIDVLAAMPA----PRIFVMGD 347 Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE + + H ++ I + G + + + + D L Sbjct: 348 MGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAAETF--GAEGLWFADKDPLIQV 405 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + L + V+VK S ++ L Sbjct: 406 LSHDLPERATVLVKGSRFMKMEEVVEAL 433 >gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] Length = 466 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 196/459 (42%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D HDF+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133 + I V D AL +L R + ++ +IA+TGS GKTTTKEML LS + Sbjct: 85 -----DVEIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG SH GEI + + LV+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G E I AK+EI+ + G + D F + A I +FG Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILD---AAKAHRISTFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + V G H QN + + ++ Sbjct: 255 VGGDVYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVAFALAIGIGLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 ++ L +GR + + + ID++YNANP SM +Q+ +G ++ Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPTSM----RAAAQVLLQQQGLKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S V +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 466 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 195/459 (42%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR + F A+KG +D HDF+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133 + I V D AL +L R + ++ +IA+TGS GKTT KEML LS + Sbjct: 85 -----DVDIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + F + ELG SH GEI + + LV+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G E I AK+EI+ + G + D F + + A I T G Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEIHKAAQAHRISTFGVGG-- 257 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + + V G H QN + L ++ Sbjct: 258 ---DIYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFALALGIGLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 ++ L +GR + + + ID++YNANP SM +Q+ +G ++ Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPNSM----RAAAQVLLQQQGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S V +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGHDLAQLPLDHIIAVGQFASAALEGADSHSNKVKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] Length = 465 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 198/475 (41%), Gaps = 25/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + + G G P+ V G + IDSR++ P F AI+G DGHDF Sbjct: 1 MIPLP-LARIAEITSGALAGMADPRAVVRGPVVIDSRAVEPGSLFVAIRGDRVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSV 117 AV+ GA V+ + + P V D + AL LA A T+I +TGS Sbjct: 60 QAVEAGAVAVLASRP-------VDAPAVVVGDTVTALADLATAVCADLPSTTVIGVTGSA 112 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L + I T A + S+NN IG PLT+ + D + + EL G I Sbjct: 113 GKTSTKDLLARLTARIGPTIAPVESFNNEIGHPLTVLKAGEDTRYLVLELSARDAGHISH 172 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P I V+ + AHL F G + IA AK E+ E L G LN DD + Sbjct: 173 LARIAPPRIGVVLNVGTAHLGVFGGKDAIAKAKGELVEALPADGVAVLNADDPLVAAMAR 232 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ A + + A+ ++ L+ S Y Sbjct: 233 RTDARVAWYGRAESAAVRAEGVTLD-----DRGRAAFTLRTPSGAAPVVLRLYGEHAVEN 287 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + A A + + R T+I+++YNANP SM+AA Sbjct: 288 ALAAAAAAYELGLPVATIAEELSEAEPRSRWRMEVTDRADGVTVINDAYNANPDSMRAAF 347 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410 L ++ G RR AV+ + E+GE S + + + + + + +++ G Sbjct: 348 GALDALA--GGRRRFAVIAALRELGEESAALNEGVGRMAAGAGLEGLFVVGPDAGPVLAG 405 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A D +P + V + + + LV GDVV+VK + G R+ L+ Sbjct: 406 AGAAVDGVPSATRVTHVADAQEAAAALSALLVPGDVVLVKGPRAAGLERVAAALV 460 >gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] Length = 468 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 124/482 (25%), Positives = 194/482 (40%), Gaps = 31/482 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V +S D+R+++ F A+KG +D HDF +A Sbjct: 1 MIEVQ-LAQLADVLGAELIGN--DITVANVSTDTRTVSAHTLFIALKGERFDAHDFCQNA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGS 116 + GA ++V+ + + +P V D AL L + IA+TGS Sbjct: 58 MDNGAAALLVSRHL-----PVELPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM LS + G++NN IGVPLTL R+ + +F + ELG +H EI Sbjct: 113 CGKTTVKEMAAEILSQKGNVLSTAGNFNNDIGVPLTLLRLTAEHEFAVIELGANHQQEIA 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFEL 234 + T+LV+P +A++ +A AHL F + +A AK EIFEG + + Sbjct: 173 YTTNLVKPQVALVNNLAAAHLEGFGSLAGVAKAKGEIFEGLTAPLNDSGLSTAIINVDSN 232 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A L + + D S + + Sbjct: 233 DLAMWQPLLAQHAVKTFSLTDIDADFSATDIFINSEGRACFTMRTSAGTIDITLTLAGIH 292 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+ L ++ T + + R + + LID++YNA+ AS+K Sbjct: 293 NVSNALAAAALAMTVGATLEQVKAGLEQVVNVKGRVDVSHPREGLRLIDDTYNASVASVK 352 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI +L+ + G+R VLGDM E+GE S S H ++AE + V+ G + Sbjct: 353 AAIDLLASFT----GQRWFVLGDMAELGEESASLHREVAEYAMTKALDKVFTFGCASAVV 408 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLV---------DGDVVVVKSSNSCGFYRLINLLL 465 D + L +Q+ L V+ K + S +I L Sbjct: 409 SDL----NQGQHFADKSKLIEQLQAQLHLRNINQQHYQEVTVLAKGARSSRMEDVIAALQ 464 Query: 466 EE 467 E+ Sbjct: 465 ED 466 >gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 472 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 116/470 (24%), Positives = 209/470 (44%), Gaps = 17/470 (3%) Query: 5 WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +F ++++A+ G ++ G P G V G+ DSR++ P F I G +DGHDF + A++ Sbjct: 3 LSFEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEA 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTT 122 GA ++V+ + ++ +P+ V+D + AL KLA R R +I +TG+ GKTT Sbjct: 63 GAAALLVSRNPFDAVPP--VPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTV 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE+L LS T + NN IG+PL++ + F + E G+SH ++ L ++ Sbjct: 121 KELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGEEAFWVMEAGISHPNDMDELGAIL 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +A+I + P H + A K+++ L GT ++ D + Sbjct: 181 EPDLALILNVGPGHAAGLGDR-GTAHYKSKLLAHLAPGGTAIISADYPDLA--REARAVR 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +S + ++ + L G S++V G A+N++ + Sbjct: 238 QELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDGVSIDVEAPFRGAFGAENVIAVAAV 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + + R R G + +ID+SYNANP S + ++ Sbjct: 298 AHRLGLGAEEIAAGFAGAALPKQRFACSR----AGDWLVIDDSYNANPLSFSRMLEAAAE 353 Query: 363 ISP-HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ H + + VLG+M E+G LS+ H +L +++ V G H+ +D L Sbjct: 354 MAGDHADRPLVCVLGEMGELGSLSEDEHRNLGRLVADIKPRLVCWKGGHLEEFEDGLHAG 413 Query: 422 IHVHYS---ETMDGLFLFIQS-SLVD-GDVVVVKSSNSCGFYRLINLLLE 466 + + + +F + + L G V++ K S S L++ E Sbjct: 414 RYGGAFCPVTSAEDMFKGLAACDLGSGGGVILFKGSRSNKLETLVSAFTE 463 >gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 43063] Length = 480 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 126/486 (25%), Positives = 206/486 (42%), Gaps = 33/486 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T L +AI + G DSR ++ + F A+ G + DGH F+ ++ Sbjct: 1 MTLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARR 58 Query: 64 GAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109 G + +V+ D + + V V D AL +LA A + +A Sbjct: 59 GGKVAIVSHDRTEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTG 118 Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +I ITGS GKTTTK++ LS+ T A + S+NN +G+PLT+ V ++ + Sbjct: 119 KLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYLVL 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G S G+I +LT + +A++ + AHL ++S +E +A+ KA I E L +G L Sbjct: 179 EMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSGMAIL 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVV 284 N DD E + ++ + F KN ++ + + + S V Sbjct: 239 NADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGSAPVQ 294 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G H N + I + LS P + LID+ Sbjct: 295 LQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD--LIDD 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +YNANP S++AA+ V++ R + VLGDM E+GE S H ++ + IS + Sbjct: 353 AYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVL 410 Query: 405 WLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 G + AL R H +Q + GD+++VK S+ G ++L Sbjct: 411 LTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLA 470 Query: 462 NLLLEE 467 + E Sbjct: 471 QEIEER 476 >gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] Length = 464 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 116/459 (25%), Positives = 188/459 (40%), Gaps = 31/459 (6%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +N +SI+S+ + + F AI+G G+ F+ A++KGA V +++ V + Sbjct: 18 DFKINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGA-FAVYDSEAVKIDEKYAE 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 F V D + L K A R +I ITGS GKTT K+M+ LS K G+Y Sbjct: 73 RAFFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEGNY 132 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+P TL R D DF I E+GMS GEI L + P I VIT I +HL Sbjct: 133 NNHIGLPFTLLRAEKDDDFIILEMGMSDFGEIDLLGQIALPDINVITNIGESHLEFLKTK 192 Query: 204 EEIASAKAEIFEG------LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 E + AK EI + N E+++A + + Sbjct: 193 ENVFLAKTEIIPHIKSTLVINGDDKYLKNVKAENIEIVRALNLRNNEYEDKTSDFYYGDI 252 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + + ++ + +G H N++M + + + +A+ Sbjct: 253 HFDESGTNFFLKYFGKMCQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDKIISEAV 312 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 R + G T I+++YNA+P SMK ++ S I + +I VLGD Sbjct: 313 KNIELTGMRF----QIIENGNTTYINDAYNASPMSMKKSLETFSLI--FNDKLKIMVLGD 366 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-------------RSIHV 424 M E+GE H DL + + N ++L G + +L + + ++ Sbjct: 367 MLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKENMDNGNLENESLKNKEF 426 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 Y + + + I+ V++K+S +I Sbjct: 427 EYFDEKNKIKDRIREISESK-AVLLKASRGMKLEEIIEK 464 >gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides 2.4.1] Length = 477 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 178/475 (37%), Positives = 249/475 (52%), Gaps = 16/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT + G + G+SID+RS+ P + F A+ DGH F+ A Sbjct: 1 MTPLWTSDEAAATTGGRATRAFAA---TGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGKT Sbjct: 57 LARGAAAALVSR--RPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 175 LARPHLALITTVAAAHLEAFDSLSAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALG+ +FG++ +AD++L + E + G + G H A N L TL Sbjct: 235 ALGV-PAVTFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357 L D+ A L ++ P GRG R R AL+ F LID+++NANPASM A++ Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353 Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G + Sbjct: 354 ELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL +ALPR + ET L + + GD+V+VK S +++ L + Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468 >gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] Length = 494 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 116/494 (23%), Positives = 203/494 (41%), Gaps = 40/494 (8%) Query: 8 HDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + G + P+ G++ DSR P + + A+ G DGHDF+ A+ GA Sbjct: 6 KQIAACTGGSFMVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65 Query: 66 GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + ++ L V V D A+ +A R +IA+TGS GKTT Sbjct: 66 VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK ++ L+S T A G+ NN +GVP TL D + E+GM G++ L Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRP ++ + +H+ E IA AKAE+ L + D + + Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL------------------------- 276 L + + + +A R+ + + Q+ Sbjct: 246 LDARRVETVLFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGFADAP 305 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ G H N + + AL+ P+ GR + R Sbjct: 306 EEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGG- 364 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 FT+++++YNANP SM+A+++ + G+ +AVLGDM E+G + + H + E Sbjct: 365 --FTVVNDAYNANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFA 420 Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + + G L + DA R+ + + ++ +F + + + GD V+VK+S Sbjct: 421 ATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKAS 480 Query: 453 NSCGFYRLINLLLE 466 + G R++ L+ Sbjct: 481 HFMGLTRVVEGLVN 494 >gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella oralis ATCC 33269] gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella oralis ATCC 33269] Length = 436 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 117/435 (26%), Positives = 181/435 (41%), Gaps = 15/435 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR F A++G ++DG+ F A++KG +V+ VD Sbjct: 17 ITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQ--KYQKPDDSRYILVD 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L +LA R R II ITG+ GKTTTKE+++ L G++NN +GV Sbjct: 75 NCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGNFNNDVGV 134 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + E+G SH G+I+ L +V P +IT + AHL F E + Sbjct: 135 PKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNVGKAHLQGFGSFEGVIRT 194 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + ++ L S L + + + Sbjct: 195 KGELYDYLRAKQGGNKVFINADNPYLMNISQGLTLIKYGKRDDCELSVKGEVTGCSPFLD 254 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 G EV IG + NML I +ALS + P R + Sbjct: 255 FRWYNTQAGHWNEVHTRMIGAYNIDNMLAAACIGLHFGISEADIDEALSKYTPSNNRSQL 314 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ LI ++YNANP SM AAI + + IA+LGDM E+G S+ H Sbjct: 315 TVTNDNK----LIVDAYNANPTSMHAAIENFKAMHVSPK---IAILGDMRELGNASKEEH 367 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L + +VWL G K + ++ + +Q++ G +++ Sbjct: 368 QRIADELKTADFDNVWLVGEEFYNTKSGFRK------FHNIEEVKTALQTNKPKGCYILI 421 Query: 450 KSSNSCGFYRLINLL 464 K SN +L LL Sbjct: 422 KGSNGLHLSQLPELL 436 >gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] Length = 454 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 197/472 (41%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + G IG + +S D+RSI F A+ G +D H+F A Sbjct: 1 MITV-TLSQIADITGGERIGN--DLSIESVSTDTRSIEQGALFVALVGERFDAHNFCQQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+ GAG ++V + ++ + + D AL ++A + +AITGS GKT Sbjct: 58 VESGAGALLVQKRVNVNVPQVVV-----GDSKVALGQVAAWVHQTCQTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K G++NN IGVPLTL R D D+ + ELG +H+GEI + T Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQ 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++ +A AHL F I+ + AK EI++GL G +N D + Sbjct: 173 LVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGGAKWDEVLA 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + T E S+ + GI + Sbjct: 233 DKNVITFSQSNADAYFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAA 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+++ I S R LID+SYNA+ +MKAA+ +L Sbjct: 293 SIIALKMGATLEEI--RSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKAAVDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +G+R +LG+M E+GE S + H + E + HV G + + Sbjct: 351 AAF----QGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL--- 403 Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468 + ET + +I+ L + ++VK +N + + L E + Sbjct: 404 -CDGIHFETHQEMIDYIKQHLDQAVPEHHTMLVKGANGARMFEVAAALKEYY 454 >gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] Length = 465 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 112/468 (23%), Positives = 192/468 (41%), Gaps = 13/468 (2%) Query: 6 TFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 TF DL++ + G I + IS DSR+I + F + G +DGHD++ A Sbjct: 4 TFKDLIK-LWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAFD 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G VV+ + +P + V D L A ++A+ R ++A+TGSVGKTTT Sbjct: 63 LGIQAAVVSEKYNG-LVPTGLPHWVVPDTLYAYQQIALLHRRNLSLPVVAVTGSVGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ LS + + + G+ NN +GVP TL + E+GM G+I L+ + Sbjct: 122 RELIRAILSPLGEIVSSRGNENNDVGVPKTLLSGSETDAAFVLEMGMRGFGQITRLSRVA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IAVIT + AH+ E IA AK+EI L G + + + D E + + Sbjct: 182 EPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVIIPFGDYILEKALLEKWSG 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTL 300 I + G S N + + + + + Sbjct: 242 RIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQIDMQNNFILFEGRKFKLPLEGRHNAM 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + LT + + + K ++ G + ++DE+YNA+P S+ A++ +L Sbjct: 302 NFLLALTVATELGLSIKKLDQLKINMPIGRNRLVDCGQYLVLDETYNASPESVIASLELL 361 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL 418 GR AVLG M E+G S H + + ++ + G +K + Sbjct: 362 ----VSKPGRHFAVLGTMLELGSESILLHQKVLKKAIELGLTGIVFVSCGEESNIIKKTI 417 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + T + + L GD +++K S +++ L + Sbjct: 418 KELPNHDVVSTPKDAAMSLLPWLSPGDNILIKGSRKLELEKVLPFLQK 465 >gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] Length = 488 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 118/469 (25%), Positives = 184/469 (39%), Gaps = 21/469 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-------ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 L+Q + G G+ +V + DSR + F + G +DGH F+ Sbjct: 28 NLGQLVQ-LWGEPAGLTADQWVQRQSEPLGPVCTDSRRLEAGALFVPLVGEQFDGHAFLA 86 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A + GA +V AS+ + + V D A +LA R + A ++A+TGS G Sbjct: 87 DAARCGAQAALVAAGSNASLPE-GLLHWRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAG 145 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTT+E++ AL+S+ A + NN IGVPLTL + E+GM GEI L Sbjct: 146 KTTTRELIRAALASLGPIQASASNNNNDIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERL 205 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +P IAVIT I AH+ E IA+AK EI L+ G + + D E A+ Sbjct: 206 SRCAQPDIAVITNIGTAHIGRLGSREAIAAAKCEITAALKLDGVVVIPAGDPLLETALAR 265 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 I + G + QL ++ L + G H A+N L+ Sbjct: 266 VWQGRIHRVALVGDPGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNARNWLL 325 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + S L D D N+ + + A+ Sbjct: 326 ARAVASGLNVDSD----------SLVALDVDVPGGRNRRLKLGALTVLDETYNASPEAVL 375 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416 + GRR AVLG M E+G+ S + H + E + + + G A+ + Sbjct: 376 AALDLLAQQPGRRFAVLGTMLELGDESAALHRAVVERAVALKLDGLVVVTSGAEATAMAE 435 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A + + ++ L GD +++K+S RL+ L Sbjct: 436 AGASLERFAVVASPEAAAEPLRGWLSAGDCLLLKASRGVALERLLPALE 484 >gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella buccae D17] gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella buccae D17] Length = 439 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 120/439 (27%), Positives = 188/439 (42%), Gaps = 19/439 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR FFA+KG +DG+ F A++KG V++ A G+ + VD Sbjct: 16 ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNG--RLILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +LA R R +I ITG+ GKTTTKE++ L G++NN +GV Sbjct: 74 NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ LE + + + + A G Y + N + ++ Sbjct: 194 KGELYDFLESHNGLLFLNESNPDLMEMAAQRNFGRIISYGRDEGGNVEGEVIDCSPFLNF 253 Query: 270 SWMEV----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 W + Q+ + EV H IG + NML + + AL + P Sbjct: 254 RWRQHLHAGQMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALGHYIPSNN 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R LI ++YNANP+SM AAI + + +A+LGDM E+G +S Sbjct: 314 RS----QLETTEHNRLIVDAYNANPSSMAAAIDNFKLMKAERK---MAILGDMLELGTVS 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + L+ I VWL G A + + +D + I + + Sbjct: 367 DEEHQKTVDALAAAGIKEVWLVGEEFGKTHTAFRK------FKNVDEVKAAIAAHRPENY 420 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K SN +L LL Sbjct: 421 YILIKGSNGIHLSQLPELL 439 >gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis DSM 16823] gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis DSM 16823] Length = 427 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 21/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GI D+R I FF +KG ++DG+ F A+Q+GA VV+ G Sbjct: 12 TGIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKT----IL 67 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDD L AL LA R + + II ITGS GKTT+KE++++ LS+ + G+ NNHI Sbjct: 68 VDDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNLNNHI 127 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL ++ + + E+G + G+I+ L + P +IT I AHL F +E + Sbjct: 128 GVPLTLLQLNTTHEIAVIEMGANKPGDIKELVEIALPTHGIITNIGRAHLEGFKSLEGVI 187 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+F L + + + ++ + + + Sbjct: 188 KTKTELFNFLAQNRGHIFANKED------ETITSHLPSNTHNHFYNDSKELHGELISLNP 241 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + S ++ + +G + N L + I + KA+S + P R Sbjct: 242 FVNMTWSEPNYTSSDIHTNLVGEYNFINFLAAIRIGRFFGISAENCNKAISDYQPTNNRS 301 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N TLI + YNANP SM++A+S ++I H + I +LGDM EMG+ + + Sbjct: 302 QVTKTEKN----TLIVDCYNANPTSMRSALSSFAKIDNHAK---IFILGDMREMGDEAPA 354 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H ++ + +S + G L K + + ++ D L + ++ Sbjct: 355 VHEEVIQQTIDLRLSG-FFIGEEFLKFK---GTHPNAIFLKSTDPLIEHFSQNPPADLLI 410 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S ++I L Sbjct: 411 LLKGSRGISLEKVIPYL 427 >gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella veroralis F0319] gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella veroralis F0319] Length = 440 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 185/442 (41%), Gaps = 24/442 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG +DG+ F A+ KG +V+ A + V+ Sbjct: 16 VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEKEYAD--PTDKRIILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R + +I ITG+ GKTT+KE+++ L+ K + +YNN +GV Sbjct: 74 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + D + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PRTLLGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRK 262 K E+++ L+ + + L + I ++G+ AD Sbjct: 194 KGELYDYLKAHDALLF--LNESNADLTEMAAQREFDRIITYGQDDTADVQGKVISCAPFL 251 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + S + Q EV H IG + NML + I AL + P Sbjct: 252 KFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHFGVTPQQINHALESYIP 311 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 LI ++YNANP+SM AAI + ++A+LGDM E+G Sbjct: 312 ----HNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFRLMEVE---HKMAILGDMRELG 364 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 S H + E+L +++VWL G L + + +D + I Sbjct: 365 AASAEEHQKVVELLKAAGLTNVWLVGEEF------LKTNTDFRKFKNVDEVKAEIAHHQP 418 Query: 443 DGDVVVVKSSNSCGFYRLINLL 464 + +++K SN + L +LL Sbjct: 419 ENHYILIKGSNGIRLFELPDLL 440 >gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] Length = 448 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 111/463 (23%), Positives = 194/463 (41%), Gaps = 36/463 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L+ D + S+ + + + +DSR + + FFAI +G+++I Sbjct: 21 MKILFNILD--EIFGIKSVVETNE--IGHVVMDSRKVQKGDLFFAI----NNGNNYIEDV 72 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA LVV + + V V++ + ++ KLA R IIAITGS GKT Sbjct: 73 LNKGAALVVAD-----NYKGNDKRVIKVENTVESMQKLAQKYREALDIKIIAITGSNGKT 127 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ LS T +G+ NNHIGVP T+ ++ + + ELGMS GEI L++ Sbjct: 128 TTKDMMYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDSKYEVAVLELGMSGFGEIDLLSN 187 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I VIT I +HL E + AK E+ + + K I DD F ++L Sbjct: 188 IAKPDIGVITNIGDSHLEFLKTRENVFKAKTELIKYITKENLII-FGDDPFLKILDGIKV 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G Y ++D + + + G H N M + Sbjct: 247 GYGDNNNYQIKNFMDSD--------------KGLSFELDENKYEVALNGKHNCLNAAMAV 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + + L R ++ + I+++YNA+P S+ ++ Sbjct: 293 VIGKKMGIPYEEIKAGLKNLELTPMRFQKIE----KENIVYINDAYNASPISVSFSLETF 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ + + +I VLGDM E+GE +H ++ + + ++L G + + + Sbjct: 349 DKL--YNDTLKIVVLGDMLELGENEIEYHKNILDKALNIHTDKIYLYGERMRKALEYIKE 406 Query: 421 S-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + + + + I V++K S +I Sbjct: 407 NREKITHFTEKEEIKKAILKEQRK-ISVLLKGSRGMKLEEIIE 448 >gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] Length = 429 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 106/440 (24%), Positives = 181/440 (41%), Gaps = 28/440 (6%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + + +DSR + FFAIKG G++ + A++ GA LV+ + + + Sbjct: 18 ESMDIKDVCMDSREVKKGSLFFAIKG----GNNHVEEAIKNGAVLVIYDRKDLLIQDENT 73 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 +D + + KLA R ++ ++AITGS GKTTTK+++ LS +T G+ Sbjct: 74 ---IFTEDTVNFMQKLARDYRKSNQTKVVAITGSNGKTTTKDIIYSVLSQRFRTKKTQGN 130 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +NNHIG+P T+ + + + E+GMS GEI L + P +IT I +HL Sbjct: 131 HNNHIGLPYTILNAQPEDEVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKN 190 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E + AK E+ E + + DD + + + G + + + D Sbjct: 191 KENVFKAKGELLE-YVHSKNTIVFGDDYYLKDIHGIKVGYGDENTFKISEFIEND----- 244 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + G H N + + + + K L Sbjct: 245 ---------KGAEFKLAGKTYRIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVEL 295 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R ++ I+++YNANP SMK AI ++ +I VLGDM E+G Sbjct: 296 TPMRFQKIEKGKK----LYINDAYNANPTSMKLAIETFDKLYNKRA-CKIIVLGDMLELG 350 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 E S+ +H ++ L +++L G + L V+Y E L S+ Sbjct: 351 EKSEEYHKNIKYYLKKSKAEYIFLYGKEMKNLWSVCQDDKRVYYFEDKI-LISKKIESIN 409 Query: 443 DGDVVVVKSSNSCGFYRLIN 462 + V+++K S +I Sbjct: 410 EKSVILLKGSRGMKLEEIIK 429 >gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] Length = 494 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 113/494 (22%), Positives = 199/494 (40%), Gaps = 40/494 (8%) Query: 8 HDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + G + P+ G++ DSR P + + A+ G DGHDF+ A+ GA Sbjct: 6 KQIAACTGGSFMVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65 Query: 66 GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + ++ L V V D A+ +A R +IA+TGS GKTT Sbjct: 66 VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK ++ L+S T A G+ NN +GVP TL D + E+GM G++ L Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRP ++ + +H+ E IA AKAE+ L + D + + Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245 Query: 242 LGIKTIYS-------------------------FGKSKNADFQLRKWKQCSEQSWMEVQL 276 L + + + + + + + Sbjct: 246 LDARRVETVLFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGFADAP 305 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ G H N + + AL+ P+ GR + R Sbjct: 306 EEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGG- 364 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 FT+++++YNANP SM+A+++ + G+ +AVLGDM E+G + + H + E Sbjct: 365 --FTVVNDAYNANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFA 420 Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + + G L + DA R+ + + ++ +F + + + GD V+VK+S Sbjct: 421 ATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKAS 480 Query: 453 NSCGFYRLINLLLE 466 + G R++ L+ Sbjct: 481 HFMGLTRVVEGLVN 494 >gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] Length = 510 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 131/506 (25%), Positives = 195/506 (38%), Gaps = 56/506 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T + + G PQ V G + DSR I + F A+ G DGHDF Sbjct: 1 MIEL-TLAQIADIVGGTLHDVPDPQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--------------DV-------LGALNK 97 A++KGA V+ + +P V D L AL Sbjct: 60 TAIEKGAVAVLGARP-------VGVPAIVVPVSGETDNRVMALESDTDGAGAAVLTALGD 112 Query: 98 LAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 LA T++ +TGS GKT+TK+++ L + +T A GS+NN IG P T Sbjct: 113 LAAYCTKSLAADGLTVVGVTGSAGKTSTKDLIAAVLRPLGETVAPPGSFNNEIGHPWTAL 172 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 R F + E+ G I L L P I V + AHL F E IA AK E+ Sbjct: 173 RATASTKFLVLEMSARGEGHIAALAKLAPPRIGVELNVGTAHLGEFGSREAIARAKGELV 232 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E L G LN DD+ + +++ A + + + + D L ++ + Sbjct: 233 EALPVDGVAVLNADDAAVAAMASRTAARVVFYGTAEAQVRATDVVLDAHA----RAAFTL 288 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 G + V G H N L + + A +ALS +R Sbjct: 289 HTAGGTAPVALKVHGEHQVHNALASAAVGLECGATTAQVAEALSGAGA--ASPRRMDVFT 346 Query: 335 NQGFFTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGEL 384 G T+++++YNANP +M+AA+ ++ R AVLG+M E+GE Sbjct: 347 TDGGVTVVNDTYNANPDAMRAALRSLVLMSEHDEAGERLPGRDRRRTFAVLGEMGELGEE 406 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL----PRSIHVHYSETMDGLFLFIQ 438 S H L L +I+ G AL +T ++ Sbjct: 407 SILEHDRLGRFLVRLDITSTICVGSSRAVHALWQGAVMEGSWGSEAIRVDTRAEAVERLR 466 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + L GD+V+VK+S S + + L Sbjct: 467 AELRPGDLVLVKASKSEKMWEVAESL 492 >gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia algicida OT-1] gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia algicida OT-1] Length = 423 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 123/436 (28%), Positives = 195/436 (44%), Gaps = 26/436 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I+ DSR I P FFA+KG +++G+ + A++KGA +V+ + V Sbjct: 14 NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVTSEQT----ILV 69 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L +L KLA R + II++TGS GKTTTKE++ LS T A G+ NNHIG Sbjct: 70 NDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLNNHIG 129 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL M D + GI E+G +H EI FL+ + P IT AHL F GIE + Sbjct: 130 VPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGYITNFGKAHLEGFGGIEGVII 189 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ L+ + D + Y FG S D + Sbjct: 190 GKSELYDYLKASDKFIFVNGDDT-----KQVERTQDANTYVFGGSDTYDLSIEFLTAN-- 242 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 V ++ IG + N+ + I + + D +A+ + P R Sbjct: 243 ---PMVSCAVDGKKIQSQLIGSYNFSNIAAAIAIGTYFKVNSDDIKEAIEAYIPSNNRS- 298 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 L + +I ++YNANP SMKAA+ S ++ + IA LGDM E+G+ ++ Sbjct: 299 ---QILTKNTNKIILDAYNANPTSMKAALDNFSDLTDTSK---IAFLGDMFELGDSAKEE 352 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + I ++L G + + + T + L + + ++ Sbjct: 353 HQFINDYAASLEIEKIYLIGENFGITN---STNEKIVIHSTFESLKENFPAL--ENSTLL 407 Query: 449 VKSSNSCGFYRLINLL 464 +K S R++ LL Sbjct: 408 IKGSRGMALERILELL 423 >gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] Length = 476 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 131/473 (27%), Positives = 204/473 (43%), Gaps = 20/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF---VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M L + ++ A G G G V G + DSR P + A G DGH F Sbjct: 1 MIAL-SLAEIAVATGGTVHGAPTSGELPVVTGAVVTDSREAEPGSLYVARIGESMDGHQF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115 + A KGA + + + +P VDDV A ++ A R + T+I ITG Sbjct: 60 VGAARDKGAVAALTSRPVDE------LPCVVVDDVQAAFVAISRAVLERATDLTVIGITG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKT+TK++L L + T A +GSYN+ +GVPLT+ R+ D F + E+G +G I Sbjct: 114 SSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVGVPLTVTRVTADTRFLVVEMGARGIGHI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + P I V+ + AH+ F E IA AKAE+ E L G LN DD + Sbjct: 174 NYLTRIAPPQIGVVLNVGTAHVGEFGSREAIARAKAELVEALPSDGVAVLNADDPVVRAM 233 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ A + + + A+ ++ V + +G H N Sbjct: 234 ADRTSARVVLVGEAAEAAVRAEDVTVGSD---GRATFRVTTPAGGATIALRLVGRHHVGN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L + +DTA +++ R T+++++YNANP SM+A Sbjct: 291 ALAVLAVALECGIPLDTATTSIAEAGIV--SRWRMEVTERPDGVTVVNDAYNANPDSMRA 348 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+S L + R AVLG M E+G+ S + H ++ + + + G + Sbjct: 349 ALSALESM--GEGRRTWAVLGSMLELGDESDTDHAEVGAEAQQRGVDELLVVGETARPMA 406 Query: 416 DALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 D P + + D +++ + DVV+ KSS G L + L E Sbjct: 407 DIRPVDGTRIRWVADADAAEALLRAEVAPPDVVLFKSSRDAGLRWLGDRLTAE 459 >gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia donghaensis MED134] gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia donghaensis MED134] Length = 424 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 113/437 (25%), Positives = 183/437 (41%), Gaps = 28/437 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NG+ D+RS+ + +FA+KG +++G+ F A++ GA L +V+ + S Sbjct: 14 NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRS-----VL 68 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL L +LA R II ITGS GKTTTKE++ LS A G+ NNHI Sbjct: 69 VDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNLNNHI 128 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + GI E+G +H GEI+ L + +P+ IT AHL F G E + Sbjct: 129 GVPLTLLTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ L + + D ++ ++ + + K Sbjct: 189 KGKSELYNYLRENNELVFINDQDEIQVRQSANIVSKTFGSSQSEYPVYLEDGSGNLKITV 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ + L G + + + D + + K Sbjct: 249 GETTITSNLIGTYNFSN---------------IAVAMAMGNHFDVPLTHIKNGIEKYVPS 293 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +++ + +I ++YNANP SM AA+ L IA +GDM E+GE S++ Sbjct: 294 NNRSQIIDKDTYKIILDAYNANPTSMAAALKNLQ----ATGTNAIAFIGDMFEVGETSKA 349 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + ++ NIS V+ G + D + V Sbjct: 350 EHQAILDLAHNLNISKVYAIGPDFGT----SSPHPEQKVYGSYDAFAKAYSKQIPADTTV 405 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S R++++L Sbjct: 406 LIKGSRGMKMERILDIL 422 >gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] Length = 451 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 206/468 (44%), Gaps = 29/468 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQ--GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T L++ + I + V+ GI DSR++ E F A++G +DGH F+ A+ Sbjct: 6 TLSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIA 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KGA +V+ + PV V D L A ++ R R +I +TGSVGKTTT Sbjct: 66 KGAIAAIVD----FEYENPGFPVLRVKDTLKAYQQIGRWWRDRFNIPVIGVTGSVGKTTT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ L + + + G+YNN IGVP TL + + D+ + E+ M G+I LT + Sbjct: 122 KELIAAVLGTKGQVHKTYGNYNNEIGVPKTLLELGAENDYAVIEMAMRGRGQIAELTQIA 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I VIT + AH+ E IA AK E+ + +N+D+ AK Sbjct: 182 RPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMAADSVAIINHDNPLLMATAAKVWHG 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + T G Q Q++ +++ G H A N L L + Sbjct: 242 EVLTYGFSGGD------------IQGQLLDNDQMEVAGIQLPLPLPGRHNATNFLAALAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L D + + R + ++DE+YNA P +M A++ +L+ Sbjct: 290 AKVLGIDWSNLKAGVE----VDMPTGRSQRFTLPNDVIILDETYNAAPEAMIASLQLLAD 345 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPR 420 + IAVLG M E+GE SQ H + E + N+ V + G A+ Sbjct: 346 TPGKRK---IAVLGAMKELGERSQQLHQRVGETVRKLNLDGLLVLVDGEDAEAMA-LSAE 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 I T L +++ + GD ++ K+++S G R++N L EF Sbjct: 402 GIPSECFATHAELVARLKTFVQTGDRLLFKAAHSVGLDRVVNQLRAEF 449 >gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cytophaga hutchinsonii ATCC 33406] gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cytophaga hutchinsonii ATCC 33406] Length = 426 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 125/437 (28%), Positives = 205/437 (46%), Gaps = 24/437 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++ D+R + + FFA+KGP+++G+ F A++ GA VVV+ V Sbjct: 14 RSVTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQ----DDRYVL 69 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL L +LA R I+AITGS GKTTTKE++ +S KTYA +G+ NNHI Sbjct: 70 VDDVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNLNNHI 129 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PLTL M ++FGI E+G +H EI V P+ +I + AHL F G E + Sbjct: 130 GIPLTLLAMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLINNVGKAHLEGFGGFEGVK 189 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + + + +K+ L + + + K Sbjct: 190 KGKGELYQYLF---------ETNGIAFINSKNEHLMEMSPFEAPVLYGRNSDFYNAKFLK 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ + + V +G + N+L L I A +A+ + P R Sbjct: 241 SDPFVAFIAGNEEL-VETKLVGDYNFDNILAALCIGKYFGVPSIAANQAIEQYDPTNNRS 299 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N+ +I +SYNANP SM+AAI + + + + +LGDM E+GE S+ Sbjct: 300 QIVKTEKNE----VILDSYNANPTSMRAAIENFASLQKENK---VVILGDMYELGEESEV 352 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H ++ +L+L + + L G ++ A Y +T + F+ S+ + + Sbjct: 353 EHANIGALLNLLTDTKIILIGKNMAAASK---ECTAAAYMDTKEAAVNFLVSNQILNSTI 409 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S G L+ LL Sbjct: 410 LLKGSRGMGLESLMPLL 426 >gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] Length = 467 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 203/473 (42%), Gaps = 30/473 (6%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W+ L QA QG+ + P G + I DSR +AF A+KG +D HDFI + Sbjct: 14 WSIEQLQQATQGYWLNDKKPAGQIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V+ + A I V+D AL +L R + + +IA+TGS GKTTT Sbjct: 74 GCEIAIVSRPVDA-----DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS + T G+ NN +GVP+ L + + + + ELG SH GEI + + +V Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPVMLLELRPEHQYAVMELGASHQGEIDYTSKMV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +PH+A I I AHL F G + I AK+EI+ + T + D F E+++A Sbjct: 189 QPHVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIS--ETSIIPAADDFAEVIRAAVRTE 246 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + G+ +D ++ S + S V G H +N Sbjct: 247 KSLSFGAGGEVYASDVV-----LEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAF 301 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D + L +GR + + ID++YNANP SM ++ Sbjct: 302 ALAIGIGLDDIVAGLEQAVGAKGRLNF----IPHKDYLFIDDTYNANPGSM----RAAAE 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGFHVLALKDALPR- 420 + +G R+ V GD+ E+G + H L ++S+ I+ V G A ++ Sbjct: 354 VLAQQQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVAVGEFAPAAQEGARST 413 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 + + F+ + + K S L+ L+E+ Sbjct: 414 QYGKKMQAFLNQEQALPFLIRLIETHQPQPMSFLFKGSRFTHMETLMAALMEK 466 >gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] Length = 450 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 131/473 (27%), Positives = 210/473 (44%), Gaps = 29/473 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + LL+ + I + V+ I D+R I P E F A++G ++DGHDF+ Sbjct: 1 MPWSVSISQLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 HA+ +GA +V++D + + V V D L A +L R R +I +TGSV Sbjct: 61 SHAIAQGAIAAIVDSDY----ENADVAVLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L++ + + G++NN IGVP TL + + D+ + E+ M G+IR Sbjct: 117 GKTTTKELIAAVLATEGRVHKTFGNFNNEIGVPKTLLELDTEHDYAVVEMAMRGEGQIRE 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + RP+I VIT + AH+ E IA AK E+ + + LN+D+ Sbjct: 177 LTQIARPNIGVITNVGTAHIELLGSEEAIARAKCELLAEMPEDSVAILNHDNPLLMATAQ 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + T G ++ M + G H A N L Sbjct: 237 QVWSGEVVTYGLSGGD------------IQGVLTDNQTIKVGEMRLPLPLPGRHNASNFL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + +L D T + R + L+DE+YNA P +M AA+ Sbjct: 285 AALAVAQVLGIDWSTLQNGVK----VNMPTGRSQRFTLPHDIILLDETYNAAPEAMTAAL 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415 +L+ + IAVLG M E+GE S H + E + + V + G A+ Sbjct: 341 QLLADTPGKRK---IAVLGAMKELGERSLQLHQRVGETVQRLQLDGLLVLVDGKDAQAIA 397 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + I T L +++ + GD ++ K+++S G R++N EF Sbjct: 398 QSA-EGIPSECFTTHADLVARLKTFVQAGDRILFKAAHSVGLDRVVNQFRAEF 449 >gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216] gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216] Length = 447 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 126/438 (28%), Positives = 194/438 (44%), Gaps = 35/438 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-PVFGV 88 IS DSR I P FFA++G +DG+ F A++KGA VV+ + + + V Sbjct: 42 ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKADRLIVV 101 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L L LA R I+AITGS GKTTTKE+++ L+ + YA G+ NNHIG Sbjct: 102 DDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNNHIG 161 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL M DV+FGI E+G S GEI L + P+ ++T I AHL F G E + Sbjct: 162 VPLTLLAMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNIGRAHLEGFGGPEGVRR 221 Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L +T G +F+ +D + A+ L + + + + + Sbjct: 222 GKGELYDWLARTGGRVFVPANDPVLMSMAAERETLAAECYPTTLADGVEHHLEGDYNRFN 281 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + + Sbjct: 282 --------------------------------VAAAVAVGRYFGVDDERIRYAVGSYRPD 309 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + G TLI + YNANP+SM+A++ Q G R+I +LGDM E+G+ S + Sbjct: 310 NHRSQKIRTGQNTLILDCYNANPSSMQASLVNFRQEPLEGCTRKILILGDMLELGDWSDA 369 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + + + + + L G H +L R + + L ++ V + Sbjct: 370 EHRHIISLAAEIPDARILLVGPHFAKAYRSLESRPADTTLYPSQEVLAAELRKHPVSQAL 429 Query: 447 VVVKSSNSCGFYRLINLL 464 ++VK S+S G RL +LL Sbjct: 430 ILVKGSHSIGLERLADLL 447 >gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccae ATCC 33574] gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccae ATCC 33574] Length = 439 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 119/439 (27%), Positives = 186/439 (42%), Gaps = 19/439 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR FFA+KG +DG+ F A++KG V++ A G+ + VD Sbjct: 16 ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNG--RLILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +LA R R +I ITG+ GKTTTKE++ L G++NN +GV Sbjct: 74 NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I+ L V P +IT + AHL F E + Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ LE + + + + A G Y + N + ++ Sbjct: 194 KGELYDFLESHDGLLFLNESNPDLMEMAAQRNFGRIISYGRDEGGNVEGEVIDCSPFLNF 253 Query: 270 SWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 W + + EV H IG + NML + + AL + P Sbjct: 254 RWRQHLHAGQIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALGHYIPSNN 313 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R LI ++YNANP+SM AAI + + +A+LGDM E+G +S Sbjct: 314 RS----QLETTEHNRLIVDAYNANPSSMAAAIDNFKLMKAERK---MAILGDMLELGAVS 366 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H + L+ I VWL G A + + +D + I + + Sbjct: 367 DEEHQKTVDALAAAGIKEVWLVGEEFGKTHTAFRK------FKNVDEVKAAIAAHRPENY 420 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K SN +L LL Sbjct: 421 YILIKGSNGIHLSQLPELL 439 >gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] Length = 461 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 129/480 (26%), Positives = 212/480 (44%), Gaps = 40/480 (8%) Query: 5 WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHY--------- 51 ++ ++ + + G I I + FV+ + DSR I F I Sbjct: 3 YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62 Query: 52 ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 DGH FI A++ GA + I S+P+ V D AL LA + Sbjct: 63 YTIAEKDGHKFINSALKNGAVASFADH-----IVQTSLPLILVSDTQLALWALAKNYLNK 117 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+TGS GKTTTK+++ LS K + + S NN IGVP T+ MP D + + Sbjct: 118 INPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTEIAVI 177 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+GM HLG++ L+ ++ P+IA+IT I AH+ F ++IA AK EI +GL+K GT Sbjct: 178 EMGMDHLGQLTALSKMLEPNIALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDGTFIY 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + D E+L + L +FG+ ++ +F + + + S+ + Sbjct: 238 DGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSF-----KVNQETYSV 288 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + +G A N + + T + + R + T+I + Sbjct: 289 NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDN---LQITKNRLQLLTGSKGETIISDV 345 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YN+NP + AI +L +G++I VLGDM E+G+ S H+ L + V+ Sbjct: 346 YNSNPTAAIKAIEILKDFP--TQGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVY 403 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L G + +L + + + L +QSSL DVV++K+S+ ++ L+ Sbjct: 404 LVGPIMKSLAVKMQARWYDKAF--LTDLSRDLQSSLSKNDVVLLKASHGIHLEKVEQALI 461 >gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] Length = 487 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 131/498 (26%), Positives = 205/498 (41%), Gaps = 48/498 (9%) Query: 4 LWTFHDLLQAIQGH----SIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 + +LL A+Q + I P + + +DSR + P F A+ G DGH + Sbjct: 1 MIRLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLY 60 Query: 57 ILHAVQKGAGLVVVNTDMVASI-------------------------GSLSIPVFGVDDV 91 + V++GA +V+ +A++ + VDD Sbjct: 61 LPDVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDP 120 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L AL + AV R T+I ITGSVGKT+TKE++ +S +T S+N+ I +P Sbjct: 121 LCALQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITLPA 180 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 TL + D + E+GM GEIRFL L RPHI ++T + P+HL IE IA+AKA Sbjct: 181 TLLGLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLERLGSIEAIANAKA 240 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ E L G LN DD + ++ A + ++G + +AD + + Sbjct: 241 ELPESLPPDGWCILNADDPRVAAMAKRTPA----HVVTYGFAPHADVRAVEVISHGLYGI 296 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + + + +++ AI A R R Sbjct: 297 ELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAIAAGLRDPG---ERLRLR 353 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 Q T+ID++YNA P S AA+ VL+ GRRIAVLG+M E+G ++ H Sbjct: 354 VVNGQQGVTIIDDTYNAAPLSTIAALEVLA----ETPGRRIAVLGEMLELGSATEEGHRQ 409 Query: 392 LAEVLSLYNISHVWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + G A + A V D ++S + GD + Sbjct: 410 VGAAAART-ADLLVAVGRQAQTVAAAARAAGMAEAQVIVCADNDAAIDRLRSLIQAGDCL 468 Query: 448 VVKSSNSCGFYRLINLLL 465 +VK S ++ L Sbjct: 469 LVKGSRGVQMETIVTALQ 486 >gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] Length = 471 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 231/468 (49%), Gaps = 14/468 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 +W+ DL A+ V + + +S+ I P + F A++ + DGH F+ A+ Sbjct: 5 IWSAADLTAALGVPVNVNVNVNGI--VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALA 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTT 121 +GA V+V+ + + + + V++ + AL++LA R + T I ITGSVGKT+ Sbjct: 63 RGADAVIVSKLID---NNANDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTS 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE++ S+ KT+A ++NN +G+ L LA +P++ ++ IFEL S G ++ L + Sbjct: 120 TKEIMFKVFSTYYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELSTSSPGGLQKLVKI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + +IAV+T I AH F+ +E + AK EIF GL G +N D F+ + Sbjct: 180 LPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINK 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 LGI +++FG + A+ + + ++ + + + + Q + Sbjct: 240 LGINNVFTFGTHQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAV 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISV 359 ++ ++ + + G+ LN + +ID+ YNANPASMK A+ + Sbjct: 300 MLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDL 359 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L QI + +A+LGDM E+G ++ H++L + YNI HV G + + + LP Sbjct: 360 LGQIKAKRK---VAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVIAIGSLMKNVYELLP 415 Query: 420 RSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + ++ L + L D D V++K SN +++I LLE Sbjct: 416 AELKLSHYNNINELPVDQLLPLLHDKDYVLIKGSNRMRLWQVIENLLE 463 >gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] Length = 432 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 184/435 (42%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L+ I N E Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFE- 252 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G +V IG + N L + I + +AL+ + P+ R + Sbjct: 253 --WKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N TLI ++YNANP SM AA+ ++ + + +LGDM E+G S + H Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVEKK---MLILGDMRELGTESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L + V L G A H + +Q+ +++ Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN ++ L Sbjct: 418 KGSNGIKLNTVVEFL 432 >gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 462 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + ++ + V G++ DSR + P F ++G DGH+FI A Sbjct: 3 MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPVAATA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA V D + L V D L A+ +LA ++ ++AITGS GKTTT Sbjct: 62 GAVATFVAADHLPVTTKLIT--LVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M L++ +YNN IGVP+T+ M + + + E+GM G++ L+ L Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT I AH+ F ++IA AK EI +GL+ GT N D+ L + Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP----LLQERAKK 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ++ + I N++ L Sbjct: 236 ITQERETFGLHPENTIFAHSISGHRNHTEFT----VEAWPDLTFSIPIMGEYNVVNALAA 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + + R + + ++ + YNANP +MKA I S+ Sbjct: 292 LLVGRKFHVKPEIMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418 + GR IAVLGDM E+GE S + H LAE L + V+L G + AL DAL Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHASLAEALDPKEVQVVYLYGSDMKALADALAAKY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + + +Q+ + D+V++K+S+ +++ L+ Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALVA 458 >gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 463 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 130/470 (27%), Positives = 205/470 (43%), Gaps = 21/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + + ++ +A+ G P+ V G + DSR I P F A G H DGHDF Sbjct: 1 MIAM-SLAEIAEAVGGRLSDTANPETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSV 117 V + P VDDV A KLA A R II +TGS Sbjct: 60 -------AAVADGAVAALVSREVDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSA 112 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK+++ ++ T A G+ NN IG+P T+ ++ + + E +G I + Sbjct: 113 GKTSTKDVMAELCRALGPTVAPEGTLNNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDY 172 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P IAV+ + AH+ F ++ IA AK E+ E + G + LN DD+ Sbjct: 173 LCGIAPPGIAVVINVGTAHMGEFGTVDGIARAKGELAEAVAPGGVVILNADDARVAA--- 229 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +FG++++AD + + Q + S V G H N L Sbjct: 230 -MRDRARARVVTFGEAESADIRATDVVSEAGQPRFTLHTPNGSAPVALKLYGAHHVSNTL 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + A V P +R T+ID+SYNANP+SM AAI Sbjct: 289 AAAAVAVELG--MAAEAIASVVSGPLSLSPRRMDVFTRADGTTVIDDSYNANPSSMAAAI 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + L+ + E R+IAVLG M E+G+ +++ H+ + E+ + +I V A+ + Sbjct: 347 NALADL--GKESRKIAVLGYMAELGDETEAAHLQVGELAARNDIDIVISVEEVAAAIAEG 404 Query: 418 LPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + Y + + L GDVV+VK S +++ + L E Sbjct: 405 AGLAGSIAYGVDDQAEAIAKLDELLDVGDVVLVKGSR-YRTWKVADYLRE 453 >gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium HTCC5015] gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium HTCC5015] Length = 452 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 136/464 (29%), Positives = 211/464 (45%), Gaps = 21/464 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + + ++G G V G ID+R++ + FFA+ G DGH+F+ A + GA Sbjct: 6 LSQITRVLRGEWHGD--DCHVKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGAS 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEM 125 VV + + +P V D AL LA R + +A+TGS GKTT KEM Sbjct: 64 AAVVER----YLEDVDLPQCVVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEM 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS++ T A G++NN +G+PLTL R+ + F + E+G S GEI +LT + +P Sbjct: 120 LKQILSAVGSTCATQGNFNNDLGLPLTLLRVGREHQFAVLEMGASQFGEIEYLTQVAKPD 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A++ PAHL F I +A K EI+ GL + G +N DD + ++ Sbjct: 180 VALVNNAGPAHLDGFKDISGVARGKGEIYNGLGEKGIAIINADDIHADYWRSLCADK--- 236 Query: 246 TIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T+ SFG +AD Q + +L S+ + G H A+N + + Sbjct: 237 TVVSFGLENSADVQGQWSSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAAAVA 296 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D+D K LS P GR LID++YNANPAS+ A I V + Sbjct: 297 LAAGVDLDAVEKGLSKVRPVAGRMVPMTARGGFY---LIDDTYNANPASLMAGIDVALDM 353 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + LGD+ E+G+ S++ H L E + + ++ G + Sbjct: 354 ----QRPVWLALGDLAELGDNSETVHAQLGEQVQQRGVQRLFTLGEQSKNAAERFGEGAA 409 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + L I++ V++VK S S R++ LL EE Sbjct: 410 A--FDSPEALAQQIETLATRDVVLLVKGSRSSRMERVVRLLSEE 451 >gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] Length = 467 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 123/475 (25%), Positives = 212/475 (44%), Gaps = 24/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L + ++ AI G + + + DSR FFA++G DGH F Sbjct: 1 MIEL-SIAEIAAAIGGELVDGTDGKRRLPPVAVQTDSRLSTAGSIFFALRGETTDGHLFA 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAI 113 AV+ GA L+V + + + V+D + AL LA R + ++A+ Sbjct: 60 HTAVENGATLIVAERAL-----DIDVAQIIVNDGVTALQALARAVVARVRENGQLKVLAV 114 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTK ML L +T A GS+NN +G P+T+ + + + E+G +G Sbjct: 115 TGSNGKTTTKNMLRTILEREGETVAPKGSFNNDVGAPITMLGVTNSSKYLVVEMGADGIG 174 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 +I L +V P + ++ + AH+ F A AK+E+ L T LNYDD Sbjct: 175 DITRLQSIVMPDVGIVLMVGLAHIGKFGDAATTALAKSEMVTALPPQSTAVLNYDDGRVR 234 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + ++ A T+ FG ++D + + + + ++ + + + V +G H Sbjct: 235 AMAPQTEA----TVNFFGLDSHSDVWADEIEASARGTAFDLHVADEVVPVQLRILGEHHV 290 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + + A+++ R G T+I+++YNA+P SM Sbjct: 291 TNALAAIT--AARALGIPVQRSAVALESIDRAERWRMELLEAPGGITVINDAYNASPDSM 348 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AA+ L Q+ E R +AVLG++ E+GE + H + ++ N+ + + G Sbjct: 349 AAALKTLVQV-VGPENRSVAVLGEIAELGEYANEEHDRIGRLIVRLNVQKLIVVGHAARH 407 Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +A + ++ + ++ L GDVV+VKSSNS G L + + Sbjct: 408 IHNAAGLEGSWDGESVLVDNVEEAYAVLREELRGGDVVLVKSSNSAGLRHLGDRI 462 >gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 440 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 118/466 (25%), Positives = 206/466 (44%), Gaps = 27/466 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + ++G +G V G+ +DSR++ + F +KG DGHD+I Sbjct: 1 MKDLKT-DIIANWVKGSVLG---STQVQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDV 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ I +L + VDD + AL A A R AT I ITGS GKT Sbjct: 57 IGKGAVAVLVDHK----IDNLDVCQIIVDDTMAALQLFAKAYRDTLNATFIGITGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK++L LS + + A + N IG L L RM D +FGIFE+G+ ++G++ + Sbjct: 113 STKDILFSILSRVGNSIATYKNQNTEIGTYLNLFRMNDDTEFGIFEMGLDYVGDVAVMAE 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +RP ++ ++APAH+ NF IE IAS K IF+ + F D + + Sbjct: 173 CIRPDAGLVMSLAPAHMMNFDSIEHIASEKMRIFDFVTHKDLSFYQGDFEQYRSI----- 227 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++FG +++ ++ + + ++ V + Sbjct: 228 ---SHGEHTFGFNEDNEWVVSDVSSNNHGIS-------FKLDGVAYSSNLLGNHQASNCA 277 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G++++L+ + R G ++ ++Y +NP S K A+ +L Sbjct: 278 GVIALLSKLGIDDAVIREGLNHVALTSLRTELVEK-GNALVLLDAYKSNPISAKYALDLL 336 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419 + +G R+A+L DM E+G S H+++ + + NI G AL D+ Sbjct: 337 AHY--EYDGDRVAILSDMVELGPESHKAHLEVLDCIQDLNIKMAHTLGPEFKKALSDSRL 394 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +T + + + ++++K S S RL+ + Sbjct: 395 DASRFTNDDTFEAFVERVTPCFDEHAMILIKGSRSYQLERLMEEVK 440 >gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio japonicus Ueda107] gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio japonicus Ueda107] Length = 463 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 127/443 (28%), Positives = 203/443 (45%), Gaps = 16/443 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +S D+R++ + F A++G +D HDF+ A + +VV ++ + Sbjct: 31 DAMFTRVSTDTRTLDAGDLFIALRGERFDAHDFLAQAEARQPCAMVVEK----FNPAIQL 86 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P V D AL ++A R ++AITGS GKTT K ++ L +T A G+ Sbjct: 87 PQLVVADSTLALGQVAALNRSLFTGPLVAITGSSGKTTVKTLVASILGECGETLATRGNL 146 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIGVPLTL + F + E+G S EI + L +P +A+I + PAH+ F I Sbjct: 147 NNHIGVPLTLLELEERHQFAVIEMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSI 206 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 +A+AK+EI+ GL G +N DD+F + T+ + +A+ + Sbjct: 207 AGVANAKSEIYGGLVTGGIAVVNIDDAFAPQWIQQLAGKKTLTV--SLANPDANCRAEAI 264 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + SE ++ + + + ++ + G H +N LM L A ++ + L+ F P Sbjct: 265 EYASEHLAFDLLIHRQRLRIILNAQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPV 324 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR R R N +ID+SYNANP S++AAI VL+Q I VLGD+ E+GE Sbjct: 325 AGRMSRQRGIHN---ALIIDDSYNANPGSVRAAIDVLAQAEDS-----ILVLGDLAELGE 376 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H L + +I+ ++ G + + L + L Sbjct: 377 TATEQHAALGDYAKQKHINRLFTLGVLTANTSSHFGEG--AQHFTERNQLLAALIPLLTS 434 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 G V+VK S S ++ L E Sbjct: 435 GTTVLVKGSRSSKMDLVVRELCE 457 >gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Congregibacter litoralis KT71] gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Congregibacter litoralis KT71] Length = 458 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 134/466 (28%), Positives = 208/466 (44%), Gaps = 17/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L + + + + G V+GI+IDSR++ P + F A+ G DGH++I A Sbjct: 2 MSAL-SLSVIAERLGAPYEGAP--LAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA +V + A +P V L AL+ + A+R S++ +IAITGS GKT Sbjct: 59 VANGAIAALVEHPVDA-----DVPCLRVSSCLAALSDIGRASRDFSRSLVIAITGSCGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K + + T A G+YNN IGVPLTLAR+ + F I E+G + G+I L Sbjct: 114 TVKNLCRSIFTQAGPTVATAGNYNNEIGVPLTLARLDDETRFAIVEMGATRRGDIAHLCA 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP I + AHL F + ++A KAEIF+GL GT LN D + L + + Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDGLGAQGTAILNLDQPWVSLWRERIA 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G T+ + + S +++ G+ V G H N L Sbjct: 234 RAGADTVSYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAAA 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + D+ T + L R R TLID+SYNANP S++AAI +L Sbjct: 294 ALATAAGLDLGTIVTGLEQAE---AESGRLRAESLGEDKTLIDDSYNANPGSVRAAIDLL 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + G + +LG+M E+GE S H ++ ++ G + + Sbjct: 351 AATA----GNSLLILGEMLELGEESAERHREMGARAREQGVTRFVGIGDALKPAVETFGS 406 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + T D L + L D ++VK S ++ + + Sbjct: 407 T--GQWYPTRDALTAALPELLEQSDTLLVKGSRGAAMESVLVAIRD 450 >gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] Length = 476 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 119/477 (24%), Positives = 196/477 (41%), Gaps = 31/477 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L +LL + + + + +DSR++ F ++G + DGH +I A++ Sbjct: 14 LMNLDELLTSTGAWLVYESNSSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALK 73 Query: 63 KGAGLVVVNTDMVASI--------GSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113 GA VV+ D + + V + L AL A + I I Sbjct: 74 NGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNLYKIGI 133 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTKE+L S T + G+ N+ G+PL++ + + + GIFELGM+ G Sbjct: 134 TGSSGKTTTKEILASIYSKKYNTVSTKGNLNSETGLPLSVFEVRPEHEAGIFELGMNRKG 193 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI + ++ P+ A+IT I AH+ + IA K EIF + F+ F + Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDSLGFIPE-CEFTD 252 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 LK H +D ++ + + ++ K E++ G + Sbjct: 253 FLKDIPHG---------SVFTVSDNDSSLVQKVEDAGVLGSKIFYKGEEILFPLPGVYNV 303 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L+ + + L P G R + GF T + YNANP SM Sbjct: 304 KNALLCIALAEKKGFSAKEIKSGLEAVRPLFG-----RSQVLHGFVTYFLDCYNANPDSM 358 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 K+AI I+ VL M E+G S H + E N +++ G + + Sbjct: 359 KSAIEFCDSINTECAKHY--VLASMLELGAESDYEHKKIIEDALKSNADNLYFFGDDICS 416 Query: 414 LKDAL--PRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + S ++ +T D L ++ +L D V++K S S RL ++L E Sbjct: 417 AFEGMNVSSSKKIYKFKTNQFDALKEQLKENLSKDDFVLLKGSRSMELERLESVLKE 473 >gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei BL23] gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str. Zhang] gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei BL23] gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str. Zhang] gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W] gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II] Length = 462 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + ++ + V G++ DSR + P F ++G DGH+FI A Sbjct: 3 MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPAAATA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA V D + L V D L A+ +LA ++ ++AITGS GKTTT Sbjct: 62 GAVATFVAADHLPVTTKLIT--LVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M L++ +YNN IGVP+T+ M + + + E+GM G++ L+ L Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT I AH+ F ++IA AK EI +GL+ GT N D+ L + Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP----LLQERAKK 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +FG + ++ + I N++ L Sbjct: 236 ITQERETFGLHPENTIFAHSISGHRNHTEFT----VEAWPDLTFSIPIMGEYNVVNALAA 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + + R + + ++ + YNANP +MKA I S+ Sbjct: 292 LLVGRKFHVKPEIMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418 + GR IAVLGDM E+GE S + H LAE L + V+L G + AL DAL Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADALAAKY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + + +Q+ + D+V++K+S+ +++ L+ Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALVA 458 >gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 434 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 20/438 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I+IDSR P+ FFA+KG + DG+ F A+Q GA V++ VA+ V Sbjct: 16 NITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDPDVAA----DDRYIVV 71 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL A+ +LA R + KA IIA+TG+ GKTTTKE++ L+ K ++NNHIG Sbjct: 72 PDVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTERNHNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + FG+ E+G +H GEI L + +P +IT AHL F E + Sbjct: 132 VPLTLLRLTEEDQFGVIEMGANHKGEIASLCDIAQPDFGIITNFGRAHLEGFGSFEGVIE 191 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+F+ L + + + K+ +G + + + C Sbjct: 192 AKTELFDYLREHKGRVFINIGN--SNIVEKAKGIGNISYGINNDKADVSGYITGQNPCIS 249 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 SW + + V H +G + +N+L + + + + +AL + P+ R + Sbjct: 250 VSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEVEPNDINEALCGYIPENHRSQ 309 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N LI ++YNANP+SM AA+ + + ++ +LGDM EMG+ + Sbjct: 310 YMKTDRND----LIIDAYNANPSSMAAALRNFNSLPYP---HKMVILGDMLEMGDTAVED 362 Query: 389 HIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H ++ ++ + +I V L G ++ T+D L +++++ V Sbjct: 363 HEEIVNIIRNQLSIDEVLLVGEIFASIDSGYKT------FVTVDDLSAYLEANPPKDTAV 416 Query: 448 VVKSSNSCGFYRLINLLL 465 ++K SN G R+I L Sbjct: 417 LLKGSNGIGLERIIAYLK 434 >gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2083] gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium HTCC2083] Length = 485 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 176/476 (36%), Positives = 256/476 (53%), Gaps = 19/476 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW D +A G ++G V+GISID+RSI + F A+K DGH+F+ A Sbjct: 1 MT-LWIAPDAAKATGGKAVG---DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGAG +V V + P+ V+DVL AL L A R R++A ++AITGSVGKT Sbjct: 56 LAKGAGAALVTH--VPEGVAKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML LS+ +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI L Sbjct: 114 STKEMLRDVLSAQGRTHASVASYNNHWGVPLTLARMPQDTEFAVIEIGMNHPGEIAPLAK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RPH+++ITT+A AHL F I+ IA+ KA I GLE G LN D +LK+K+ Sbjct: 174 MARPHVSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEPDGVAILNADIETAHVLKSKAE 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ I ++ + ++ L + +E + G + G H A N L L Sbjct: 234 AMHINAVWF--GASADEYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGAL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAA 356 L AD+ A ++++ + P GRG R AL+ + ID++YNANP S+ AA Sbjct: 292 ASAEALGADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPTSLSAA 351 Query: 357 ------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 V I +GRRIA LGDM E+G+ + H +A + + ++ + G Sbjct: 352 LDVLAAAEVTHDIGRVSKGRRIAYLGDMKELGDDENAMHEAVARLSCIEHLDMIHCVGPL 411 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +ALP + H+ ET + + L GDVV+ K S S G R+++ + + Sbjct: 412 MRGCYEALPDAKRGHWFETSAEMASTVGRDLDAGDVVLAKGSLSMGLARVVDAVRK 467 >gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 467 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 142/466 (30%), Positives = 206/466 (44%), Gaps = 11/466 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ D+L+A H G IS D+RS+ P F A++G +D HDF+ A Sbjct: 1 MAARFSDADVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG VV P++ V D L AL LA R R + + A+ GS GKT Sbjct: 61 HAGGAGGAVVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ L++ G+ NN +GVPLTL R+ + E GM+ GEI LT Sbjct: 121 TTKEMVGAILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTR 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P +IT + P HL +E +A A+ E+F L +N DD L Sbjct: 181 VIQPQAGLITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDP----LIPAQA 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A G +FG++++AD +L + + E + V+ QG+ V H IG H A N Sbjct: 237 AKGRGKRLTFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGA 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + ++ L P R T++D+ YNANPASM AA+ Sbjct: 297 FALALALGYSPEECVRGLESARPYARRLN---VVDGLHGVTVVDDCYNANPASMDAALDT 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GR +AVLGDM E+G H L + V G A Sbjct: 354 LRTL-VTAGGRAVAVLGDMLELGPGELEEHAALGTRAAGR-AQLVAFFGPRSEKGFQAAS 411 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L ++ L GDVV+VK+S R++ L Sbjct: 412 GLGDATAHFTEVGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 457 >gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] Length = 469 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 208/473 (43%), Gaps = 28/473 (5%) Query: 5 WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 WT LL+A QG+ + P + I DSR +AF A+KG +D H FI ++ Sbjct: 14 WTAAQLLEATQGYWLNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122 G + +V+ + A + V D AL +L R + + +IA+TGS GKTTT Sbjct: 74 GCQVAIVSQPIDAE-----VCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTT 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEML LS I T G+ NN +GVP+ L + + + + ELG SH GEI + ++LV Sbjct: 129 KEMLGSILSRIAPTLVTRGNLNNDLGVPVMLLELHPEHQYAVMELGASHQGEIDYTSNLV 188 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A I I AHL F G + I AK+EI+ + GT + D F + ++ Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIRQAVQTE 248 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + G+ + + ++ + ++ +V G H QN Sbjct: 249 QVLSFGAGGEIFATE-----IELQAQSATFKLNTPQGVRQVNLPFAGEHNVQNATAAAAF 303 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D + L +GR + QG LID++YNANP SM ++ Sbjct: 304 ALAIGISLDDIVLGLEQAVGAKGRLNFIQ----QGRHLLIDDTYNANPTSM----RAAAE 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGFHVLALKDALPR- 420 + EG R+ V+GD+ E+G + H L ++S+ ++ V G A ++ Sbjct: 356 VLAQQEGVRVMVMGDIGELGSSAAQQHYMLGRDLVSVKGLNFVVAVGEFAPAAQEGARST 415 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 + T + F+ S + + K S L+ L+E+ Sbjct: 416 QYGKKMQAFLTQEQALPFLLSLIETHQPQSMSFLFKGSRYTHMETLMADLMEK 468 >gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] Length = 432 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 114/435 (26%), Positives = 187/435 (42%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + D L+ A G+ I + Sbjct: 194 KGELYDYLREKEDSTVFIDHDNAYLM---DIAHGLNLIPYGSEDSLYVNGHVTGNSPYLT 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G +V IG + N L + I + +AL+ + P+ R + Sbjct: 251 FEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N TLI ++YNANP SM AA+ ++ + + +LGDM E+G S + H Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVKKK---MLILGDMRELGAESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L + V L G A H + +Q+ +++ Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN ++ L Sbjct: 418 KGSNGIKLSTVVEFL 432 >gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium smegmatis str. MC2 155] gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 509 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 126/508 (24%), Positives = 202/508 (39%), Gaps = 53/508 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M + T + + + G I P+ V G + DSR++ P F A+ G DGHD Sbjct: 1 MIDM-TIARIAEIVGGELADITPEQAAATHVTGTVEFDSRAVGPGGLFLALPGARSDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG------VDDVLGALNK------------ 97 F AVQ GA V+ + +P VD GAL Sbjct: 60 FAAAAVQSGAVAVLAARP-------VGVPAIVVRPDGGVDSASGALEHDTDGSGAAVLAA 112 Query: 98 ------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 II +TGS GKT+TK++L L+ + + A GS+NN +G P Sbjct: 113 LARLAAAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D DF + E+ H G I L + P +AV+ + AHL F E IA KA Sbjct: 173 TVLRATRDTDFLVLEMSARHPGNIAALAAIAPPSVAVVLNVGTAHLGEFGSREAIAKTKA 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ + + +G + LN DD + ++ A ++ G + + + Sbjct: 233 ELPQAVGPSGVVILNADDIAVAAMAEQTDARVVRISRDPGSDIDV-WAGPVTLDELARPR 291 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + + ++V G H N L + A AL+ R + Sbjct: 292 FTLHTRDGEVDVNLAVHGDHQVSNALCAAAVALECGATPQQVADALAAAG--PASRHRMQ 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-------IAVLGDMCEMGEL 384 + T+I+++YNANP SM+A + L+ ++ G + AVLG+M E+G+ Sbjct: 350 VSTRADGVTVINDAYNANPDSMRAGLKALAWMARQTAGGQPGGKRRSWAVLGEMAELGDD 409 Query: 385 SQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQ 438 + + H + ++S + + G + A+ D ++ Sbjct: 410 AITEHDAIGRFAVRLDVSRLLVVGSGRAMNAMHHGAVMEGSWGSESTMVADADAALTVLR 469 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L GDVV+VK+SNS G L L+ Sbjct: 470 DELQPGDVVLVKASNSVGLGALAEALVA 497 >gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 638R] Length = 432 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 184/435 (42%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L+ I N E Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFE- 252 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G +V IG + N L + I + +AL+ + P+ R + Sbjct: 253 --WKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N TLI ++YNANP SM AA+ ++ + + +LGDM E+G S + H Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVEKK---MLILGDMRELGTESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L + V L G A H + +Q+ +++ Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN ++ L Sbjct: 418 KGSNGIKLSTVVEFL 432 >gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Lactobacillus rhamnosus GG] Length = 463 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 21/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T ++ + ++ + G++ DSR + P F ++G DGH+FI Sbjct: 1 MMKM-TLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPA 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVG 118 A GA V D + +P V D L A+ KLA ++ ++AITGS G Sbjct: 59 AAAAGAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+M L++ +YNN IGVP+T+ M + + + E+GM G++ L Sbjct: 117 KTTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHAL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + L P +AVIT I AH+ F +IA AK EI +GL++ GT N D+ L Sbjct: 177 SSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVS 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ +FG + + + I N++ Sbjct: 233 RAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFT----VEQWPELTFSIPIMGEYNVVN 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + + + R + + ++ + YNANP +MKA I Sbjct: 289 ALAALLVGRRFHVKPEAMQKALVHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIH 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S+ GR IAVLGDM E+GE S++ H LA+ L + I V+L G + AL +AL Sbjct: 349 DFSEF--QTAGRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEAL 406 Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + +Q+ + D+V++K+S+ ++ L+ Sbjct: 407 TTKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 459 >gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 518 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 142/466 (30%), Positives = 206/466 (44%), Gaps = 11/466 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ D+L+A H G IS D+RS+ P F A++G +D HDF+ A Sbjct: 52 MAARFSDADVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQA 111 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG VV P++ V D L AL LA R R + + A+ GS GKT Sbjct: 112 HAGGAGGAVVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKT 171 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ L++ G+ NN +GVPLTL R+ + E GM+ GEI LT Sbjct: 172 TTKEMVGAILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTR 231 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P +IT + P HL +E +A A+ E+F L +N DD L Sbjct: 232 VIQPQAGLITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDP----LIPAQA 287 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A G +FG++++AD +L + + E + V+ QG+ V H IG H A N Sbjct: 288 AKGRGKRLTFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGA 347 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + ++ L P R T++D+ YNANPASM AA+ Sbjct: 348 FALALALGYSPEECVRGLESARPYARRLN---VVDGLHGVTVVDDCYNANPASMDAALDT 404 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + GR +AVLGDM E+G H L + V G A Sbjct: 405 LRTL-VTAGGRAVAVLGDMLELGPGELEEHAALGTRAAGR-AQLVAFFGPRSEKGFQAAS 462 Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L ++ L GDVV+VK+S R++ L Sbjct: 463 GLGDATAHFTEVGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 508 >gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] Length = 432 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 186/435 (42%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + I VD Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIGV Sbjct: 74 NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P+TL R+ + + + E+G +H GEI+FL H+ P +IT + AHL F E + Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L+ A G+ I + Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLM---DIAHGLNLIPYGSEDALYVNGHVTGNSPYLT 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G +V IG + N L + I + +AL+ + P+ R + Sbjct: 251 FEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N TLI ++YNANP SM AA+ ++ + + +LGDM E+G S + H Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVKKK---MLILGDMRELGAESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L + V L G A H + +Q+ +++ Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN ++ L Sbjct: 418 KGSNGIKLSTVVEFL 432 >gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus HN001] gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus HN001] Length = 462 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 209/469 (44%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + ++ + G++ DSR + P F ++G DGH+FI A Sbjct: 3 MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA V D + +P V D L A+ KLA ++ ++AITGS GKTTT Sbjct: 62 GAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M L++ +YNN IGVP+T+ M + + + E+GM G++ L+ L Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT I AH+ F +IA AK EI +GL++ GT N D+ L Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVSRAKQ 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ +FG + Q + +G + N L L + Sbjct: 236 VTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMGEYNVVNALAALLV 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + KAL+ F R + + ++ + YNANP +MKA I S+ Sbjct: 295 GRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418 GR IAVLGDM E+GE S++ H LA+ L + I V+L G + AL +AL Sbjct: 352 F--QTAGRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + +Q+ + D+V++K+S+ ++ L+ Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 458 >gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] Length = 511 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 121/516 (23%), Positives = 200/516 (38%), Gaps = 60/516 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ G P V G + DSR + P F A+ G DGHDF Sbjct: 1 MIAL-TLQEIADITGGRLDCVPDPAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------------------------LGA 94 AV+ GA V+ + +P V+ + A Sbjct: 60 KAVESGAVAVLAARP-------VGVPAIVVEPTGKVEGDGANADIYANDEDGSAAAVIQA 112 Query: 95 LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L+ LA A R I+ +TGS GKT+TK+++ + +T A GS+NN +G+P Sbjct: 113 LSALARAVTQRLAAEDGLNIVGVTGSAGKTSTKDLIATIFRAAGETVAPPGSFNNEVGLP 172 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R ++ + E+ +G IR LT + P + V+ + AHL F E IA AK Sbjct: 173 YTALRCDEHTEYLVAEMSARGIGHIRHLTGITAPKVGVVLNVGTAHLGEFGSRENIALAK 232 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQ 265 E+ E L + ++ + + K +Y G + A + + Sbjct: 233 GELVEALPSAAEGGVAVLNANDSFVAGMALRTNAKVVYYSAVAKQGSTPPAQYYATDVQL 292 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + Q + + + + A ++ + Sbjct: 293 DDVARASFLMHTPGHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALSGHRIA 352 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + TLID+SYNANP SM+ A ++ + + R IAVLG+M E+G+ Sbjct: 353 SEHRMDVRNRRDGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMGELGDD 412 Query: 385 SQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL 441 + H L L+ Y++ H+ G + A+ +A + I+ S +D + S L Sbjct: 413 ALDAHRQLGAELAKYHVDHLVAVGSSPNTRAMAEAAQAKGINTSVSVDVDEAAKIVDSLL 472 Query: 442 VD-------------GDVVVVKSSNSCGFYRLINLL 464 DVV+VK+SN+ + + L Sbjct: 473 RTPPVGVDDWPQRDVKDVVLVKASNAQRLWLVAEKL 508 >gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] Length = 464 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 120/470 (25%), Positives = 192/470 (40%), Gaps = 24/470 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + G G ++ +S D+RS+ P + A++G +DGHDF A + Sbjct: 5 LLSL--IAHWAGGEIHGD--DVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++V + + +P V D AL K+A + + AITGS GKT+ K Sbjct: 61 GASALLVER-----LLPIELPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVK 115 Query: 124 EMLTIALSSIKKTYA-----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 +L L + + G+ NN IG+PL + P D D+ ++E+G G+I +L Sbjct: 116 SLLLSILQQVAQHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYL 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + RP A++ IAPAHL + +A K I+ L G +N DD++ + Sbjct: 176 TDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQH 235 Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +G AD R + ++ + + VV G H N L Sbjct: 236 FVGTPARCRVLRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNAL 295 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + D+ L+ P GR ++ L+D+SYNANP S+ AAI Sbjct: 296 AAASLALAAGVDLALIAAGLAEAQPVPGRQIAHQLRNG---AVLVDDSYNANPGSLAAAI 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ G VLGDM E+G +++ H + ++ G A A Sbjct: 353 DALAAAPEEG----WLVLGDMRELGPDAEALHAQAGIRARAAGLKRLYALGPLSAAAAAA 408 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T L +Q L G +VK S ++ LL + Sbjct: 409 FGEGGR--HFATHGALSQALQDELHAGVRCLVKGSRGSAMDLIVKALLAQ 456 >gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus GG] gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus GG] Length = 462 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 124/469 (26%), Positives = 204/469 (43%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + ++ + G++ DSR + P F ++G DGH+FI A Sbjct: 3 MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA V D + +P V D L A+ KLA ++ ++AITGS GKTTT Sbjct: 62 GAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M L++ +YNN IGVP+T+ M + + + E+GM G++ L+ L Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT I AH+ F +IA AK EI +GL++ GT N D+ L Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVSRAKQ 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ +FG + + + I N++ L Sbjct: 236 VTQSQETFGLHPENTLFAHSISGHRNHTEFT----VEQWPELTFSIPIMGEYNVVNALAA 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + + R + + ++ + YNANP +MKA I S+ Sbjct: 292 LLVGRRFHVKPEAMQKALVHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418 GR IAVLGDM E+GE S++ H LA+ L + I V+L G + AL +AL Sbjct: 352 F--QTAGRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + +Q+ + D+V++K+S+ ++ L+ Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 458 >gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC 43183] gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC 43183] Length = 475 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 191/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GI+ DSR+ F A+KG ++G+ F A++ G+ VV+ A G Sbjct: 57 TGITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAGDT--RYIL 114 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD+ L L +LA R + II ITG+ GKTTTKE+++ LS +G+ NN I Sbjct: 115 VDNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNLNNPI 174 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + + G+ E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 175 GVPLTLLRLTTEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVI 234 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + G + L + A G+ I ++ Sbjct: 235 RTKGELYDYLRRQGNSTIFLHQDNPYL---REIARGLNPITYGEENSLYINGHVTGNSPY 291 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +G+ +V IG + N L + I + + KAL+ + P+ R Sbjct: 292 LAFEWRAGKEGEFHQVHTRLIGEYNFPNALAAVTIGHFFGVEAEKIDKALNEYEPRNNRS 351 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM AAI + + + +LGDM E+G+ S Sbjct: 352 QLKKTADN----TLIIDAYNANPTSMLAAIGNFRNMQAEKK---MLILGDMRELGKDSAE 404 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + L Y V L G A + L +Q + G + Sbjct: 405 EHQRIVDYLEEYGFEDVILVGELFAATRH------TYTTYPDAPALIAALQKNKPCGKTI 458 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN +++ L Sbjct: 459 LIKGSNGIKLNTVVDYL 475 >gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] Length = 466 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 125/459 (27%), Positives = 200/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ V G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG+ Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFGE- 255 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L ++ Sbjct: 256 -GGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chryseobacterium gleum ATCC 35910] gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chryseobacterium gleum ATCC 35910] Length = 423 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 104/435 (23%), Positives = 192/435 (44%), Gaps = 27/435 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++IDSR IA + FFA G +++ A+ GA V+V + + +F V Sbjct: 16 VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE---LPEFENRDKNIFYVP 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 L L +LA+ R + I +TGS GKTTTKE++ LS G+ NNHIGV Sbjct: 73 STLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ + + + + E+G +H EI FL + +P IT AHL F G E + Sbjct: 133 PLTILSIKPEHEMAVIEMGANHQKEIEFLCTISQPDFGYITNFGKAHLEGFGGFEGVIKG 192 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+++ L+ + ++ +L K +++ I +FGK + ++ Sbjct: 193 KSELYDYLKNNNRTIVVNENDPIQLEKTENYPSKI----TFGKETSNYNFESFSEEHFVG 248 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++ V G + N+ + + AL ++ P R + Sbjct: 249 LI------YQGVKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKIKHALELYTPTNMRSQV 302 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + TL+ ++YNANP+SM A+++ EG + ++GDM E+G+ S+ H Sbjct: 303 VKKEGR----TLVLDTYNANPSSMTASLNNFISF----EGSKTIIIGDMLELGDESEKEH 354 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ ++ + + G H A+ + E L +++ + + +++ Sbjct: 355 QNILKLAQDLHFDEIITVGKHFKAV------NSSDLAFENTTELAEYLKQHKIQTENILL 408 Query: 450 KSSNSCGFYRLINLL 464 K S ++I+ + Sbjct: 409 KGSRGIALEKIIDFI 423 >gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] Length = 455 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 199/467 (42%), Gaps = 19/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + + G G P+ V G + IDSR++ P F AIKG DGHDF Sbjct: 1 MIPLP-LARVAEITSGALNGLADPEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQ 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A GA V+ + + A V D V + A T++ +TGS G Sbjct: 60 EACAAGAVAVLASRPVDAP------AVIVRDVVAALADLAAAVVAELPSVTVVGVTGSQG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK++L I T A +GS+NN IG PLT+ + F + EL ++G I +L Sbjct: 114 KTTTKDLLAGLTERIGPTVAPVGSHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAYL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + P I V+ + AH+ F G E IA AK E+ E L + G LN DD + + + Sbjct: 174 TRIAPPRIGVVLNVGAAHIGVFGGREAIAKAKGELVEALPEDGVAVLNADDPYVREMAGR 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A S A+ + + ++ + S V G HM + L Sbjct: 234 TRARVTWFGRSAEARIRAENETLDER---GRASFTLCTPSGSAPVRLRLHGAHMVPDALA 290 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L V + LS P R T+I+++YNA+P S++AA + Sbjct: 291 AAAVAYELGLPVVAIAEELSRAEP--RSRWRMEVTDRADGVTVINDAYNASPDSVRAAFA 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + RR AV+ M E+GE + + + + + + + G + Sbjct: 349 ALRAM--GDGRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDDAGPILAGA 406 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 P +IHV D + S L GDVV+VK + G R+ +L Sbjct: 407 PGAIHV---PDTDAAARELASRLAPGDVVLVKGPRAAGLERVAAAVL 450 >gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] Length = 461 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 128/480 (26%), Positives = 211/480 (43%), Gaps = 40/480 (8%) Query: 5 WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHY--------- 51 ++ ++ + + G I I + FV+ + DSR I F I Sbjct: 3 YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62 Query: 52 ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 DGH FI A++ GA + I S+P+ V D AL LA + Sbjct: 63 YTIAEKDGHKFINSALKNGAVASFADH-----IVQTSLPLILVSDTQLALWALAKNYLNK 117 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IA+TGS GKTTTK+++ LS K + + S NN IGVP T+ MP D + + Sbjct: 118 INPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTEIAVI 177 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+GM HLG++ L+ ++ P+I++IT I AH+ F ++IA AK EI +GL+K GT Sbjct: 178 EMGMDHLGQLTALSKMLEPNISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDGTFIY 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + D E+L + L +FG+ ++ +F + + + S+ + Sbjct: 238 DGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSF-----KVNQETYSV 288 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + +G A N + + T + + R + T+I + Sbjct: 289 NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDN---LQITKNRLQLLTGSKGETIISDV 345 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YN+NP + AI +L G++I VLGDM E+G+ S H+ L + V+ Sbjct: 346 YNSNPTAAIKAIEILKDFP--TRGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVY 403 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L G + +L + + + L +QSSL DVV++K+S+ ++ L+ Sbjct: 404 LVGPIMKSLAVKMQARWYDKAF--LTDLSRDLQSSLSKNDVVLLKASHGIHLEKVERALI 461 >gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] Length = 432 Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 123/437 (28%), Positives = 191/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR+ F A+KG +++G+ F A++ G+ +V+ G Sbjct: 14 TGVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIVDEAAYVPAGDTH--YIL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD+ L L +LA R R II ITG+ GKTTTKE+++ LS G+ NN I Sbjct: 72 VDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D GI E+G SH G+I+ L + P +IT + HL F E + Sbjct: 132 GVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVI 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + G + L K I G N Sbjct: 192 RTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQDGLYVNGHVTGNSPYLIF 251 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + +G EV IG + N L + I + + +AL+ + P+ R Sbjct: 252 E---WKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPEKIDQALNEYEPRNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM A+IS + G+++ +LGDM E+G+ S Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILGDMRELGKDSPE 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + L + V L G A + P L +Q + G + Sbjct: 362 EHQKIVDYLEKCDFKDVALVGELFAATRHNYPT------YPDAPALIAELQKNKPCGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN +++ L Sbjct: 416 LIKGSNGIKLNTVVDYL 432 >gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella copri DSM 18205] gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella copri DSM 18205] Length = 433 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 119/435 (27%), Positives = 191/435 (43%), Gaps = 17/435 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR F A+KG +DG+ F A++KG V+V+ A G V+ Sbjct: 16 ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYVIVDEKEYAKEGEE--RYILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L +LA R ++ ITG+ GKTTTKE+++ L G++NN +GV Sbjct: 74 DCLTTFKELAREHRRHFDIPVVGITGTNGKTTTKELVSAVLGEKFNVMFTQGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+IR L V P +IT + AHL F E + Sbjct: 134 PKTLFRLSPENEIAVVEMGASHPGDIRKLVEYVEPTCGMITNVGRAHLQGFGSFEGVKKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + D+ E L + I + ++GK +N D Sbjct: 194 KGELYDYLAANDALVFINADN--EHLMQMAEQRNINRLITYGKDENCDVWGEVISCAPFL 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + EV H IG + NML + I AL + P R + Sbjct: 252 KFRWRTESFDWHEVQTHLIGSYNIDNMLAAITIGLHFDVKPQQIDHALENYIPSNNRSQL 311 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 A N+ L+ ++YNANP+SM AAI + ++A+LG M E+GE+S H Sbjct: 312 EETAHNK----LVVDAYNANPSSMAAAIENFRMMDVP---HKMAILGQMGELGEVSHEEH 364 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L + +VWL G + + ++ + ++++ +++ Sbjct: 365 QKVVDQLQTAGLENVWLVGDEFKDI------PCSYRKFQNVEEVKEALKANQPHDHYILI 418 Query: 450 KSSNSCGFYRLINLL 464 K SNS ++L LL Sbjct: 419 KGSNSVKLFQLPELL 433 >gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] Length = 436 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 128/451 (28%), Positives = 197/451 (43%), Gaps = 22/451 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++G Sbjct: 3 SENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 VDD L AL LA A R + ITGS GKTT KEML L A Sbjct: 63 ----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI+ GL G + +D+ + K + L T + D Sbjct: 179 CGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFG----VDSGD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 + ++ + VV G H N + ++ + L Sbjct: 235 VRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR TLID++YNANP SMKAA+ VL+++ RI V+GD Sbjct: 295 QGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAAVDVLARMPA----PRIFVMGD 347 Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE + + H ++ I + G + + + + D L Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L + V+VK S ++ L ++ Sbjct: 406 LSHDLPERATVLVKGSRFMQMEEVVEALEDK 436 >gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Brevundimonas subvibrioides ATCC 15264] Length = 474 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 156/464 (33%), Positives = 223/464 (48%), Gaps = 10/464 (2%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A G G V NG++ +SR I P + F A+KG DGHDF A Sbjct: 7 PLWTAQEIAVATGGRIEGGVFDA--NGLTYNSREIEPGDLFLALKGAR-DGHDFAASAFA 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121 GA +V + P V D L AL L AAR R A+TGSVGKT+ Sbjct: 64 AGAAGALVERPVD------GGPCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKTS 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + + L +A I SYNNHIGVPLTLARM V+ +FE+GM+ GEI L + Sbjct: 118 VTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMHPSVERAVFEIGMNAPGEIGPLARM 177 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+PH A +TT+ P H+ F+ E +A+ G + + D+ + L ++ Sbjct: 178 VQPHAACVTTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGLAVINGDNPWVELLHQAAL 237 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + +FG D +L + E + + ++ G++ G+H N L + Sbjct: 238 RAGARVATFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAVIL 297 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L V+TA++AL+ F P +GRG+ L +G FTLIDESYNANP SMKA L Sbjct: 298 MLDALDVPVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGFLSLG 357 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 GRR+ VL DM E+G+ S++ H LA + I V +G + L DA+ Sbjct: 358 AKPVERRGRRVVVLTDMLELGDQSEALHAGLATAIEAAAIDVVHAAGPQMRHLYDAISPE 417 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T L D+V+VK SN + LL Sbjct: 418 RRGVWAGTAAALADQAADLAGPDDIVMVKGSNGSKASLVAAALL 461 >gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 46P47B1] Length = 494 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 135/492 (27%), Positives = 197/492 (40%), Gaps = 39/492 (7%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 W +L QAIQG + I D+R I + F AIKG +D HDFI +A Q+ Sbjct: 9 WNQDNLKQAIQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 GA +V + +P V D AL L R T+IA+TGS GKTTT Sbjct: 69 GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ LS I T G+ NN +GVP+ L + + F + ELG +HLGEI + +V Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPIMLLELTDEHRFLVIELGANHLGEIAYTASMV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238 RP +A+I I AHL F G IA AK+EI+ L G L + D F+ L + Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243 Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 A+ S F + ++ Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + ++ + + T + ++ ++ + K L+ Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +ID++YNANP SM AA VL +I VLGD+ E+G+ + H L L Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454 +L I HV G H+ A+ + + L ++ L G V+ K S Sbjct: 420 ALLEIDHVLTLGNHMAHTATAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRD 479 Query: 455 CGFYRLINLLLE 466 LI L Sbjct: 480 MAMESLIADLTA 491 >gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB056] gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB058] gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB059] gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] Length = 466 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 125/459 (27%), Positives = 199/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ V G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L ++ Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KTPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Succinatimonas hippei YIT 12066] gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Succinatimonas hippei YIT 12066] Length = 461 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 208/471 (44%), Gaps = 24/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P + +L + QG G V ++ DSR+ P F A+KG +D HDF+ A Sbjct: 1 MIPFY-LSELARKAQGTLSG--EDIEVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA + V+ G+ S+P D L L + R + A I A+TGS GKT Sbjct: 58 VLSGAAALGVS-----LGGNFSVPCVKCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM L G++NN +GVPLTL R+ +D+ I E G SH +I+ + Sbjct: 113 TVKEMAYSILKQGFNAMCTNGNFNNDVGVPLTLLRLDEKLDYAIIEQGASHKEDIKRTSE 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239 V+ AVIT + AH+ F + K+EI + + + G + + + K Sbjct: 173 FVQADAAVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDY 232 Query: 240 HALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ + +FG + + ++ + K S++ + +G+S ++ + +G H AQN Sbjct: 233 KEAFLQGKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAA 292 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L D L +GR N FTLID++YNA+ ++ + I Sbjct: 293 AAALCLALGCDFKYIKPGLENTSSVKGRL----QVKNFAGFTLIDDAYNASFNAVLSGID 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 LS + G ++ V GDM E+G+ + S H + I+ + G + Sbjct: 349 TLSSFA----GFKVMVFGDMGELGDEAVSLHEKVGLYA-KNKINLLLCLGPLSRHSVEKA 403 Query: 419 PRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ D L F++ + D V++VK S++ + + L+ Sbjct: 404 --GSIARHFDSHDALAAFLKDEVLKRHDNAVILVKGSHAMRMDLITDKLIA 452 >gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Capnocytophaga ochracea DSM 7271] gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Capnocytophaga ochracea DSM 7271] Length = 444 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 119/441 (26%), Positives = 185/441 (41%), Gaps = 21/441 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R+I P +FA+KG ++G+ F A+ KGA V++ V Sbjct: 14 GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT----LLV 69 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DDVL L +LA R + K +I ITGS GKTTTKE++ LS A G+ NN+IG Sbjct: 70 DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + D I E+G +H GEI FL + P IT+I AHL F E + Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189 Query: 209 AKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYSFGKSKNADFQL 260 K E+++ TI N D+ E L + G+ ++ Q Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGEGVNVSAQCLSTQPVKIQF 249 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + ++G + + N + + KA+ Sbjct: 250 ADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTN-IAASVAFGRYFKLSTKAIQKG 308 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L G T++ ++YNANP+SM AAI L ++ + +LGDM E Sbjct: 309 IESYIPQNNRSQLLQWGSNTVLLDAYNANPSSMTAAIDNLLSMNSFPNK--VLILGDMFE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ + H + + L + + V+L G + K P+ ET + + Sbjct: 367 LGDYATQEHQSIVDKLKEHQWAGVYLIGKNFKQTKAPYPQ------YETFEEFREVFKKL 420 Query: 441 LVDGDVVVVKSSNSCGFYRLI 461 ++++K S RLI Sbjct: 421 SFQDSLILIKGSRGMALERLI 441 >gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697] gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697] Length = 432 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 123/437 (28%), Positives = 191/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR+ F A+KG +++G+ F A++ G+ +V+ G Sbjct: 14 TGVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAGDTH--YIL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD+ L L +LA R R II ITG+ GKTTTKE+++ LS G+ NN I Sbjct: 72 VDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D GI E+G SH G+I+ L + P +IT + HL F E + Sbjct: 132 GVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVI 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + G + L K I G N Sbjct: 192 RTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQDGLYVNGHVTGNSPYLIF 251 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + +G EV IG + N L + I + + +AL+ + P+ R Sbjct: 252 E---WKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPEKIDQALNEYEPRNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM A+IS + G+++ +LGDM E+G+ S Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILGDMRELGKDSPE 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + L + V L G A + P L +Q + G + Sbjct: 362 EHQKIVDYLEKCDFKDVALVGELFAATRHNYPT------YPDAPALITELQKNKPCGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN +++ L Sbjct: 416 LIKGSNGIKLNTVVDYL 432 >gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM 18228] gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM 18228] Length = 461 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 124/435 (28%), Positives = 188/435 (43%), Gaps = 20/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A+QKG VV+ A + V+ Sbjct: 47 VTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQKDDP--RILLVE 104 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L G+ NNHIGV Sbjct: 105 DCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNNHIGV 164 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G SH GEI LTH+V P +IT + AHL F E + Sbjct: 165 PLTLLRLKPEHEIAVVEMGASHPGEIHMLTHIVEPDYGIITNVGKAHLEGFGSFEGVIRT 224 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L + I+ + G + Sbjct: 225 KGELYDYLRSRKNSSVFIQNENPYLNQIAEGLNCIRYGQTEGLYVSGHVLKCSPFL---- 280 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + EV H IG + N+L I + + ALS + P+ R + Sbjct: 281 -AFAWIGEKGLHEVQTHLIGTYNLDNVLAAAAIGRFFGVEEEEISLALSSYIPQNNRSQL 339 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N LI ++YNANP SM AA+ + ++ +LGDM E+G S+ H Sbjct: 340 EETPNNH----LIVDAYNANPTSMMAALENFRHVEAA---HKMVILGDMKELGSSSKEEH 392 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L N V L G ++ + + +D L ++S G ++V Sbjct: 393 AKIVDFLDTCNFEKVILVGPEFGCIQTSYEK------YPDVDTLIDHLKSDCPIGFYILV 446 Query: 450 KSSNSCGFYRLINLL 464 K SNS RL L Sbjct: 447 KGSNSMKLSRLPEFL 461 >gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-3C] gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-3C] Length = 428 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 197/440 (44%), Gaps = 27/440 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +S DSR I +FA+ G ++G+DF + A+ GA VV+ Sbjct: 14 KSVSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAAKYKDHPG----CIY 69 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V DVL AL L R KA +I++TGS GKTTTKE++ LS T A +G+ NNHI Sbjct: 70 VADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNLNNHI 129 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL+L + +F + E+G +H EI FL L +P IT AHL F G++ + Sbjct: 130 GVPLSLLNIKESTEFAVIEMGANHQKEIEFLCALAQPDFGCITNFGKAHLEGFGGVQGVI 189 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L L ++ + + + I SFGK + + + K Sbjct: 190 KGKSELYQYLIANNKTILYNNEDPIQAGALRQYDHSI----SFGKDQESTYTTSILK--- 242 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 S V++Q + + G + A N ++ I + A+ + P R Sbjct: 243 --SNTSVKIQFQDTTINTSLYGAYNATNCMIAASIGRHFDVPIQDIKNAIESYKPNNNRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + G L+ ++YNANP+SM+ AI S+++ +I VLGDM E+GE + Sbjct: 301 ELRQ----IGPHMLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIVVLGDMFELGETAAK 356 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-- 445 H + L L I+ + L G + + D ++S D Sbjct: 357 EHQAIVAQLKLSKINRIILIGALFHNTQHSFES------YPNFDAFKQ--KNSPFKSDPS 408 Query: 446 VVVVKSSNSCGFYRLINLLL 465 ++++K S R++ LL Sbjct: 409 LILIKGSRGMALERVLPLLE 428 >gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] Length = 476 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 117/443 (26%), Positives = 196/443 (44%), Gaps = 25/443 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+ KG +V+ A G+ VD Sbjct: 51 VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAGNN--RFILVD 108 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L A +LA R +I ITG+ GKTT+KE+++ L+ K + +G++NN IGV Sbjct: 109 NALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNNDIGV 168 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL M D + + E+G SH +I L V P +IT + AHL F E + + Sbjct: 169 PRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKNT 228 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-------- 261 K E+++ L+ + + L + + + ++G+ AD + Sbjct: 229 KGELYDYLKAHNALLF--LNESNPDLVEMAEQREFERVITYGQDNTADVKGEVVSCAPLL 286 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K+ + QS Q+ EV + IG + NML + I + AL + Sbjct: 287 KFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHFGVEPQKICHALESYV 346 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + N+ LI ++YNANP+SMKAAI + + +A+LGDM E+ Sbjct: 347 PSNNRSQLTETKDNK----LIVDAYNANPSSMKAAIENFRLMDIKNK---MAILGDMREL 399 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+++ H + + L + +VWL G + ++ + I + Sbjct: 400 GDVTAEEHQRVVDELIASGLENVWLVGEEFGKT------NCSFRKFADIEEVKAAIAAQK 453 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 +++K SN + L LL Sbjct: 454 PIDHYILIKGSNGIKLFELPELL 476 >gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] Length = 459 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 213/470 (45%), Gaps = 24/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + + + + +N I DSR + F A+ G ++D HDF+ Sbjct: 6 MKTL-TLNFICETLN--LPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADV 62 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA L +V+ D + VDD L AL KLA A R + ITGS GKT Sbjct: 63 LAKGA-LALVSRDDFVGVSG----CLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKT 117 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL + + + + E+GM+H GE+ Sbjct: 118 TVKEMLATVLREKFGADAVLATAGNFNNHIGLPLTLLNLRENHRYAVIEMGMNHFGELAV 177 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P++A++ AH+ F+G+++IA AK+EI++G+++ G L DD+ + + Sbjct: 178 LTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQ 237 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A L ++T +FG D S ++ + + + G H N Sbjct: 238 AACKNLNLQT-QTFG-FAQGDIHAENLVLQPLASEFDLIQGSECVHITLPVAGRHNVSNA 295 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + + L+ F +GR + T++D++YNANP SMKAA Sbjct: 296 CAAAALALAGGVKLTEIARGLANFANIKGR---LQVKHGIKNSTILDDTYNANPDSMKAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ R+ V+GDM E+GE + H ++ I + G + + Sbjct: 353 LDVLAKMPA----PRVFVMGDMGELGENEAPKMHEEIGIYAKNLGIELAYFVGENSVQAA 408 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + D L L + L + V+VK S ++ L+ Sbjct: 409 EKF--GADGLWFVDKDPLILSLTHDLAENASVLVKGSRFMKMEEVVMALM 456 >gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 428 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 111/462 (24%), Positives = 197/462 (42%), Gaps = 36/462 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L+ D + S+ + + + +DSR + + FFAI +G+ +I Sbjct: 1 MKILFNILD--KIFGIKSVVEKNE--IGHVVMDSRKVQKGDLFFAI----NNGNSYIDDV 52 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA LV+ + + V V+D + + +LA R +IAITGS GKT Sbjct: 53 LEKGAALVIAD-----NYKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKT 107 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ LS T +G+ NNHIGVP T+ ++ + + ELGMS GEI L+ Sbjct: 108 TTKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSS 167 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P I VIT I +HL E + AK E+ + + I DD F + L Sbjct: 168 IVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIV-FGDDPFLKDL----- 221 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G N ++Q++ + E E++ + + G H N M + Sbjct: 222 -----NGIKVGYENNNNYQIKNFTDSDEGLSFEMEEK----KYTVSLNGKHNCINTAMAI 272 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + + L R ++ + I+++YNA+P S+ ++ Sbjct: 273 VIGKKMGVSYEEISNGLKNLELTPMRFQKIE----KENIIYINDAYNASPISVSFSLETF 328 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ + + +I VLGDM E+GE +H ++ E + + ++L G + + Sbjct: 329 DKL--YNDALKITVLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYGERMAKALKVIQG 386 Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + + + + + ++ V++K S +I Sbjct: 387 NKEKITHFTNKEDIKNILEKEHGK-TAVLLKGSRGMKLEEII 427 >gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 457 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 119/463 (25%), Positives = 189/463 (40%), Gaps = 13/463 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L D+L I+ G + ISIDSR+ + F AIKG ++DGH F+ + K Sbjct: 5 LLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNK 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV+ + + + P + V+D L A KL + R + ++AITGSVGKTTTK Sbjct: 65 GVKSVVI-KKGMQKLLPDNFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM+ L + K ++NN IGV LT+ + + E+GM LG+I L+ Sbjct: 124 EMVGEVLKKLGKIKLSHSNFNNEIGVGLTILAADKEDKVLVLEMGMRGLGQIENLSKHSE 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AH+ + I AK EI + L G + + +D E + Sbjct: 184 PDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + + + + G+H A N L + Sbjct: 244 VIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENTFKISFEGFHNASNFLFAYAVA 303 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D ++ K V L T+ DESYNA+P S+ A I L Sbjct: 304 KELGIDFESFNKFDFVSLG------GRNKILKSVKTTIYDESYNASPESVNACIKNL--- 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK-DALPRS 421 + + G M E+GE S+ +H ++ +++ +I + + L Sbjct: 355 -IGKPRNKFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCFFICDKKSEKIYTKYLKDK 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + I S GD +++K S ++I L+ Sbjct: 414 KKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456 >gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] Length = 421 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 114/433 (26%), Positives = 187/433 (43%), Gaps = 23/433 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ D+R FF ++G ++DG+ F+ A++KGA VV + S Sbjct: 10 KGVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKA----IV 65 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D L AL +LA R + IIA+TGS GKTTTKE++ L+ G+ NNH+ Sbjct: 66 VKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNLNNHL 125 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D I E+G +H GEI L + P IT AHL F E + Sbjct: 126 GVPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYITNFGRAHLEGFGSFEGVI 185 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK+E+++ L+K +D+ + + G + YSF + + Sbjct: 186 RAKSELYQYLKKDNKCIFFSEDNSLQ----RELLEGYEPTYSFSL---EGREGANLQLSL 238 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 +S V L+ E IG + A N+ + I + + + + P R Sbjct: 239 LKSIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAEAIRRGVEGYIPTNNR- 297 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + ++ ++YNANP+SM AAI + ++ +LGDM E+G S+ Sbjct: 298 --SQFVEKTRGNRVLMDAYNANPSSMHAAIEAFQALPSA---HKVLILGDMKELGAYSER 352 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L ++ Y + V L G + + + + ++ + + Sbjct: 353 EHQQLVTDIATYPWTAVLLIGENFGRTQTDFLK------FASPAEANSYLAAHPFSDTLF 406 Query: 448 VVKSSNSCGFYRL 460 +VK S S ++ Sbjct: 407 LVKGSRSMTLEKI 419 >gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] Length = 466 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 200/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D HDF+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A +I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DA-----NIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + LV+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ + + I + + G Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTTEIREAAKSHHIMSFGTGG-- 257 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L +D Sbjct: 258 ---DVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLDDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAQLPLDHIIAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 197/460 (42%), Gaps = 13/460 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L I+ G + I IDSR+ + F AIKG ++DGH+F+ + KG Sbjct: 8 IKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGVK 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VV+ + + + + P + V D L A KL + R + ++AITGSVGKTTTKEM+ Sbjct: 68 SVVI-KEGMQKLLPDNFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTKEMV 126 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ + K ++NN IGV LT+ + + E+GM LG+I L+ +P I Sbjct: 127 GEVLNKLGKIKLSHANFNNEIGVGLTILATDKEDKVLVLEMGMRGLGQIENLSKYSKPDI 186 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AVIT I AH+ + I AK EI + L G + + +D E + + Sbjct: 187 AVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGRVTK 246 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + D + + + + G+H A N L+ + L Sbjct: 247 VELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEISFEGFHNASNFLLAYAVAKEL 306 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D ++ K V L T+ DESYNA+P S+KA I L Sbjct: 307 GIDFESFNKFDFVSLG------GRNKILKSVKTTIYDESYNASPESVKACIKTL----LE 356 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALK-DALPRSIHV 424 + + G M E+GE S+ FH ++ +++ +I +++ + + L Sbjct: 357 KPRNKFFIFGSMQELGEESEKFHKEIFNLINNSDIEKCLFICDKKNKKIYTNYLKDKKKF 416 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + I S GD +++K S S ++I L+ Sbjct: 417 LVLNNIKDVPKEINKSTKKGDSILIKGSRSWQLEKIIELI 456 >gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] Length = 466 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 128/463 (27%), Positives = 194/463 (41%), Gaps = 14/463 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T D+L A +G + + IDSR++ P F + G DGH F AV+K Sbjct: 3 MTLSDILAATGAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + + PV V D + AL +LA A R R A ++A++GS GKTT K Sbjct: 63 GAAAVLADRPLAG--LPEGTPVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+ L + T ++NN IG+PL++ + + ELG+S GE+ L + Sbjct: 121 ELTAAILGKVGPTAKNYKNFNNRIGLPLSMLEAGENDALWVMELGISAPGEMAPLASIAE 180 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +AVI + PAHL + +A+ K +F + EL A A Sbjct: 181 PDVAVIHNVGPAHLQALGDVAGVAAEKTFLFR--SLRPGGTALASMDYPELWDAARAAFP 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S + ++L +EVV G H A+N+L Sbjct: 239 GVRGMSTKGQAAPYRAKYLGAISEGRGRFFLKLDDLELEVVTPLTGGHFAENILAAAAAA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 IL A L+ E R R QG +TLID++YNANP SM+ AI+ ++ Sbjct: 299 RILGAGEPEIAAGLATAVMPEQRFFCRR----QGCYTLIDDTYNANPLSMRRAIAAAAET 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + + VLG+M EMG +++ H L E + + V+ G H A+ + L R Sbjct: 355 AQARP--LVLVLGEMREMGAHAEAEHGKLGEAAAASGANAVFYHGAHAEAVGEGLTRSGY 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + +T D + G V + K S S + Sbjct: 413 AGRFAVVDTPDAFLGALAPMGFGGGVFLFKGSRSMRMEEYLAA 455 >gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] Length = 464 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 109/459 (23%), Positives = 190/459 (41%), Gaps = 37/459 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LQ + + + + +DSR + FFAI+ +G+ ++ A++K Sbjct: 39 MKLLCQILQ----KRFSHLKELSIQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEK 90 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + V V D + + +LA R K +IAITGS GKTTTK Sbjct: 91 GASIVIADHYFEPHE-----RVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTK 145 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS T +G+YNNHIG+P T+ + +F + E+GMS GEI L + R Sbjct: 146 DIVYAILSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIAR 205 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +IT I +HL E + AK E+ L + + Sbjct: 206 PDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQGHF---------------ITSGDD 250 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I G + + Q + + G H N M + + Sbjct: 251 IFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYEICLEGKHNVMNAAMGIALA 310 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + LS R +R+ + I+++YNA+P SM AA+ L ++ Sbjct: 311 EMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE----YINDAYNASPISMFAALDSLEEM 366 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + AVLGDM E+GE FH ++ + ++ V L G + LP Sbjct: 367 KAERK---FAVLGDMLELGEREIEFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEG 423 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 +++ E+ + + +++ V++K+S +I Sbjct: 424 LYHFESKEAIREYLRKFSEK--TVLIKASRGMKLEDIIE 460 >gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 451 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 205/473 (43%), Gaps = 29/473 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ T + L++ + + I +GI D+R I P E F A +G +DGH+FI Sbjct: 1 MSWSVTLNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ +GA +V+ D + +PV V + L A KL R R +I +TGSV Sbjct: 61 SSAIARGAIAAIVDDDY----ENPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L + G+YNN IGVP TL + + D+ + E+ M G+I Sbjct: 117 GKTTTKELIAAVLGTKGNVLKTYGNYNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAE 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + RP I VIT + AH+ E IA AK E+ + K LN+D+ A Sbjct: 177 LAQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNPLLMATAA 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K + + T G ++ + + G H A N L Sbjct: 237 KFWSGEVLTYGLSGGD------------VQGSLVDNAIVEVAGLRLPLPLPGRHNATNYL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + +L + + +S R + ++DE+YNA P +M AA+ Sbjct: 285 AALAVAKVLGIEWSSLQAGVS----VNMPTGRSQRFSLPNDVLILDETYNAAPEAMLAAL 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415 +L+ + IAVLG M E+GE S H + E + + V + G A+ Sbjct: 341 QLLADTPGKRK---IAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVDGEDAEAIA 397 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + I T L + + + GD ++ K+++S G R+++ L EF Sbjct: 398 RSA-EGIPSECFATHADLVARLTTFVQGGDRLLFKAAHSVGLDRVVSQLRAEF 449 >gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anabaena variabilis ATCC 29413] gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anabaena variabilis ATCC 29413] Length = 451 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 202/473 (42%), Gaps = 29/473 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M+ T + L++ + I +GI D+R I P E F A +G +DGH+F+ Sbjct: 1 MSWSVTLNQLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ GA +V+ D + PV V + L A KL R R +I +TGSV Sbjct: 61 QTAIANGAIAAIVDDDY----ENPGFPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L + + G++NN IGVP TL + + D+ + E+ M G+I Sbjct: 117 GKTTTKELIAAVLGTKGNIHKTYGNFNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAE 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT + P I VIT + AH+ E IA AK E+ + K LN+D+ Sbjct: 177 LTQIANPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNPLLMATAG 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K + + T G ++ + + G H A N L Sbjct: 237 KFWSGEVLTYGLSGGD------------IQGSLVDNAIVEVAGLRLPLPLPGRHNATNYL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + +L + + +S R + ++DE+YNA P +M AA+ Sbjct: 285 AALAVAKVLGIEWSSLQAGVS----VNMPTGRSQRFSLPNDVLILDETYNAAPEAMLAAL 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415 +L+ + IAVLG M E+GE S H + E + + V + G A+ Sbjct: 341 QLLADTPGKRK---IAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVDGEDAEAIA 397 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + I T L + + + GD V+ K+++S G R+++ L EF Sbjct: 398 KSA-EGIPSECFATHADLVARLTTFVQGGDRVLFKAAHSVGLDRVVSQLRAEF 449 >gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dyadobacter fermentans DSM 18053] gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dyadobacter fermentans DSM 18053] Length = 434 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 117/433 (27%), Positives = 189/433 (43%), Gaps = 22/433 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R I FFA+KG +DG+ + A+QKGA VV+ VA+ + Sbjct: 18 VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDPTVAN----GDRFLLFE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL LA R ++A+TGS GKTTTKE++ LS TYA G+ NNHIGV Sbjct: 74 DGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLNNHIGV 133 Query: 150 PLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 PLT+ + + + E+G +H EI L+ + +P +IT I AHL F G+ I Sbjct: 134 PLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQPTHGLITNIGKAHLEGFGGVSGIIK 193 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+F+ L K + +FG+ + Sbjct: 194 GKGELFDYLSKKKGTVFVNSTQDV-------IMDMVSKRRAFGEIVFYCSENSPINPTLI 246 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V V H G + N+ L + + A +A++ + P Sbjct: 247 EENPNVVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADAYEAVATYEP----DN 302 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +G T+I ++YNANP+SM AA++ ++ + I +LGDM E+G+ + Sbjct: 303 NRSQIVKKGTNTVIMDAYNANPSSMAAAVANFGRMEAARK---ILILGDMFELGDAAPEE 359 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H+ L + ++ V L+G + ALP+ +Y L +I + + + Sbjct: 360 HLALGKQIAGEKFDVVILAGKLMQHALPALPK---AYYFPDKFSLHNWIMDNPQENTHFL 416 Query: 449 VKSSNSCGFYRLI 461 +K S ++ Sbjct: 417 IKGSRGMSLETVL 429 >gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Symbiobacterium thermophilum IAM 14863] gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 122/518 (23%), Positives = 196/518 (37%), Gaps = 60/518 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L+T ++ G P V+GI+ DSR + P + F A+ G DGHDF A Sbjct: 1 MTQLFTAAEIAALTGGRLAAGDPNAGVSGIAWDSRLVRPGDCFVALAGERADGHDFAAQA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119 +GA V+ + A V D L L +L +A R R ++ ITGSVGK Sbjct: 61 AARGAACVLAARPVPAG----DAAVVVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGK 116 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKEM L+ + + G+ N+ +G+P +LA + + + + E+GM GEI +L Sbjct: 117 TTTKEMTAAVLAERFRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLA 176 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP + V+T + HL E IA AK+E+ L G LN DD + A + Sbjct: 177 SIARPQVGVVTNVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAAAT 236 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + ++ + + ++ + + MAQ + Sbjct: 237 PARVWFYGLTAREAADDAAAAPVATGTAGEAGTPGGRVVGWVTAENARPDGPMAQRFRLV 296 Query: 300 LGIVSILTA--------------------DVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + ++A++ + G Sbjct: 297 CHLGEADVRLPAPGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFRNAGNRLRLVEAGGV 356 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D++YNA PAS+ AA+ V+ + EGR +AVLGDM E+G L H + V + Sbjct: 357 RILDDTYNAAPASVIAALEVMRGFAG-PEGRCVAVLGDMYELGALEVEGHRQVGMVAARL 415 Query: 400 NISHVWLSGFHVLAL---------------------------------KDALPRSIHVHY 426 + G + R VH+ Sbjct: 416 T-DELVAVGQLGRHIAEGARAALAGAGGGSAGAGFRGGEGPPEGQGPVAGGGTRLREVHH 474 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G +++ L GD V+VK S ++ L Sbjct: 475 VPDNAGAIAWLKERLRPGDTVLVKGSRGMKMEEIVQAL 512 >gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] Length = 434 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 114/463 (24%), Positives = 184/463 (39%), Gaps = 30/463 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L + V ++ DSR F I G DGHD+I A Sbjct: 1 MEQL-TVQKLASWFGMDLH---DERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V+KGA + ++ V V + AL A ++AITGS GKT Sbjct: 57 VEKGAIVTFWEEGRPQ---PDNLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TK+M+ + L KT+ G++N+ +G+PLT+ RMP D + + E+GM+ G+I L+ Sbjct: 114 STKDMVAVVLEEKFKTHKTAGNFNSDVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSK 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L +P +A +T I +H G IA AK EI GL+ G + ++ D+ Sbjct: 174 LAKPDVAFVTNIGESHGEQVGGRTGIAKAKLEIKAGLKADGRLIVDADEPLLS------- 226 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G D + E ++ + +G H +N + Sbjct: 227 --------GQGYRVGYDETADGKIEVIETTFDASIFKYNGDLYELKVLGAHQIRNAAYAI 278 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 D + L R ++ LI+++YNA+P SM AAI + Sbjct: 279 ACGLAFGLDHAMIQRGLDRIKLTSMRMEKQMFGEAH----LINDAYNASPTSMIAAIETI 334 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + + VLGDM E+G Q H + ++ L G + D + Sbjct: 335 KSLEGFSKR--VLVLGDMYELGADEQMQHEQVGG-AVTSPVTDCILVGDKAKWIADGIQD 391 Query: 421 S-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 S ++V T++ + VV++K+S RL+ Sbjct: 392 SRVNVKMVPTVEEAKALLHHYQRPDTVVLLKASRGLALERLVQ 434 >gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus sp. 2_1_36FAA] gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus sp. 2_1_36FAA] Length = 456 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 126/470 (26%), Positives = 203/470 (43%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + P VDDVL A LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAE------APYILVDDVLKAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + A ++ + YNANP +M+ + S I Sbjct: 288 EGVSETAIAQAFSKLELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ SL D +++K SNS +L+ L + Sbjct: 405 RVHYFVKNDEKDQFEQLTKAVRESLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 1_1_14] gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 1_1_14] Length = 432 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 118/435 (27%), Positives = 192/435 (44%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G V++ A G VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEG--DQRYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL+ +V P +IT + AHL F E + Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L K + L+ + A G+ I + Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLM---NIAEGLNLIPYGTEDDLYVNGRITGNSPYLT 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + GKS +V IG + N L + I + +AL+ + P+ R + Sbjct: 251 FEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N TLI ++YNANP SM AA+ + ++ +LGDM E+G S + H Sbjct: 311 KKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVP---HKMLILGDMRELGAESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L VWL G A + + + + +++ G +++ Sbjct: 364 QKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPKGYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN +++ L Sbjct: 418 KGSNGIKLSSVVDYL 432 >gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga ochracea F0287] gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga ochracea F0287] Length = 444 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 119/441 (26%), Positives = 187/441 (42%), Gaps = 21/441 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+S D+R+I P +FA+KG ++G+ F A+ KGA V++ V Sbjct: 14 GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT----LLV 69 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DDVL L +LA R + K +I ITGS GKTTTKE++ LS A G+ NN+IG Sbjct: 70 DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + D I E+G +H GEI FL + P IT+I AHL F E + Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189 Query: 209 AKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYSFGKSKNADFQL 260 K E+++ TI N D+ E L + G+ ++ Q Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGEGVNVSVQCLSTQPVKIQF 249 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + ++G + + N + + KA+ Sbjct: 250 ADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTN-IAASVAFGRYFKLSTKAIQKG 308 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 L G T++ ++YNANP+SM AAI L ++ + +LGDM E Sbjct: 309 IESYIPQNNRSQLLQWGSNTVLLDAYNANPSSMTAAIDNLLSMNSFPNK--VLILGDMFE 366 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ + H + + L+ + + V+L G + K P+ ET + ++ Sbjct: 367 LGDYATQEHQSIVDKLTEHQWAGVYLIGKNFKQTKAPYPQ------YETFEEFREVFKNL 420 Query: 441 LVDGDVVVVKSSNSCGFYRLI 461 ++++K S RLI Sbjct: 421 SFQDSLILIKGSRGMALERLI 441 >gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis DSM 18011] gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis DSM 18011] Length = 436 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 118/434 (27%), Positives = 203/434 (46%), Gaps = 17/434 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR+ F A+KG ++DG+ + A++ GA V+V+ V G V Sbjct: 17 ITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVDNPEVVIEGDD--RYILVH 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL ++A R K IIAITG+ GKTTTKE++ L KT+ G+ NNHIGV Sbjct: 75 DSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNLNNHIGV 134 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ M + + E+G +H GEI+ LT +V P +IT + AHL F +E + Sbjct: 135 PLTILSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNVGKAHLEGFGSLEGVIRT 194 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+++ L++ + L+K + T + +S + ++ Sbjct: 195 KSELYDYLKEKKNGTAFINFDDSILMKQAEGISHLITYGT-SESTSVCGKIDDSSLTLSL 253 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 W + L + IG + N+L + I ++ +AL + P+ R + Sbjct: 254 EWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDIKEALEQYTPQNNRSQF 313 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + NQ LI ++YNANP SM AA++ + ++ +LGDM E+G+ S H Sbjct: 314 KKTESNQ----LIIDAYNANPTSMLAALNNFCNLKAE---HKMVILGDMRELGKDSLLEH 366 Query: 390 IDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + + L+ + I V L G + + + ++ + ++ S+ + ++ Sbjct: 367 QKIIDFLTKHKDIEKVLLVGDEF------CKTNHPYTHFKDVNEVKNYLVSNPITDHTIL 420 Query: 449 VKSSNSCGFYRLIN 462 +K SN + L++ Sbjct: 421 IKGSNGIRLFTLVD 434 >gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] Length = 455 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 201/471 (42%), Gaps = 25/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ T L A+ G G V+ I D+R++A + F A+ G +DGH+F+ A Sbjct: 1 MIPV-TLSTLADAVGGTLNG--ADLMVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA +VV+ + ++P V+D L AL ++ R +AITGSVGKT Sbjct: 58 EASGAAALVVSRPV-----DSALPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM + + T A G+ NN IGVP+TL + + F + ELG +H GEIR+ + Sbjct: 113 SVKEMTAAIFAQVGPTLATRGNLNNTIGVPMTLLELTPEHRFAVIELGANHAGEIRYTSS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L PH AVI I AHL F GIE +A AK+EI+E L + GT +N DD + L + Sbjct: 173 LALPHAAVINNIRGAHLEGFGGIEGVARAKSEIYEHLGEAGTAIVNLDDEWAPWLLERLG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 T S G + L + L + V + + L Sbjct: 233 DQNRFTYSSRGPAD-----LWASALSRDADGCYHFLLHRGEAEVLVRLPLPGRHQVDNAL 287 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ + + + S R + G LID+SYNAN AS AAI ++ Sbjct: 288 AAAALASTAELSLEQIASGLAQAPTVAGRTQMTALSGEVMLIDDSYNANAASTMAAIDLM 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +G + V GDM E+GE +++ H + I + G A Sbjct: 348 A----ERDGSSLLVFGDMGELGEEAEAEHRTVGRYAGEKGIDRLLTVGTLSRF---AAQE 400 Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEE 467 + L + + L V++K S S + L E+ Sbjct: 401 HDAARHFGDQAELLPTLMTELAALPRP-VTVLIKGSRSARMENVAKALREQ 450 >gi|146299078|ref|YP_001193669.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium johnsoniae UW101] gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101] Length = 822 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 104/464 (22%), Positives = 190/464 (40%), Gaps = 12/464 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQK 63 L+ + G FV+ ISIDSRS+ F A+ G + D H +I ++K Sbjct: 4 NLKSLIPVLNAEWTGSDTDIFVDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEK 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G V + F V + L AL +LA R II +TGS GKT K Sbjct: 64 GVQNFAVQ--YIPENVKGKANFFVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVK 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS SYN+ +GVPL++ + + GIFE G+S + E+ L +++ Sbjct: 122 EWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINEKHNLGIFEAGISTVNEMVNLEKIIK 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P+I V+T I AH F + + + K +F+ D A+ Sbjct: 182 PNIGVLTNIGSAHDEGFENLTQKINEKLLLFKKSAVIIYQKNELVDKCLLDFSAQYPLEN 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +AD + K + ++ + ++ Q + + + +N + L ++ Sbjct: 242 RALFSWSFADASADVFILKKETKNDSTTIKYQYKDEIFNLEIPFSDSASIENAISCLLVL 301 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D + + +P R +LID+SY+++ S+K A+ L Sbjct: 302 LHFEYDFTIIQNRMEMLYPV---EMRLEVKNGIHNCSLIDDSYSSDFQSLKIALDFLESQ 358 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + +L D+ + G ++ + +A+++S I+ V G + + +D P S Sbjct: 359 KKNASK--AVILSDIFQSGFSNEELYSKVAQLISDNKINRVIGIGTTISSFQDKFPNS-- 414 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + I++ + + +++K + S F +++LL E+ Sbjct: 415 -TMFQNTAAFIAEIENLNFNNETILIKGARSFQFEEIVSLLEEK 457 >gi|163854998|ref|YP_001629296.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella petrii DSM 12804] gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bordetella petrii] Length = 943 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 120/439 (27%), Positives = 189/439 (43%), Gaps = 21/439 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+RSI E F A+ G +DGH ++ A GA +V + + S+P + Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVDGA----SLPQLVLG 561 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146 D AL ++ A R R +I + GS GKTTTKEM+ A G++NN Sbjct: 562 DTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGNFNND 621 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVPLTL R+ + ELGM+H GEI L L P +A++T H +E + Sbjct: 622 IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALVTNAQREHQEFMHSVEAV 681 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A E L + G DD + +A+ G + + FG D + Sbjct: 682 AQENGASIEALPEDGVAVFPGDDPHCGIWEAQ---AGARRVLRFGLQPGLDVYAEQIDAT 738 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + V S ++V G H +N L + A + A++ALS F GR Sbjct: 739 PHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGAVRALSAFSAVAGR 798 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + LID++YNANP S++AA+ VL+++ R VLGDM E+G+ Sbjct: 799 ---MQRQTLDDGTILIDDTYNANPDSVRAAVDVLARLPA----PRALVLGDMGEVGDNGP 851 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + H ++ E + I ++ G A ++D + ++ Sbjct: 852 AMHREVGEYARQHGIDTLYTLGEASRDSAAAFGPG--ALACASVDEIVAALRG-ARP-AS 907 Query: 447 VVVKSSNSCGFYRLINLLL 465 ++VK S R++ +L+ Sbjct: 908 LLVKGSRFMRMERVVKVLV 926 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 90/452 (19%), Positives = 157/452 (34%), Gaps = 41/452 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR +A + F A G DG FI A+ +GA V+ + + V V D+ Sbjct: 31 DSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPAPGDV-ATDARVRAVPDLR 89 Query: 93 GALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L +LA R +++A+TG+ GKT+ + + L+ K IG+ + Sbjct: 90 ELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGTLGAMLPDG 149 Query: 151 LTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 TL D L S +G + VR +A T + Sbjct: 150 RTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAGFTNLTRD 209 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E AKA +F+ + D + LL+ L + + Sbjct: 210 HLDYHGSMERYEQAKARLFQWPGLAAAVINADDAAGERLLRTLPRGLALGYTQ---QDVP 266 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 FQ R+ + + + +VV +G H N+L+ G++ L + + Sbjct: 267 TAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGWPLAQLAR 326 Query: 316 ALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 AL+ P GR + R G L+ Y+ P S+ A++ L ++ GR Sbjct: 327 ALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAALRPVADARGGR 386 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA----LKDALPRS 421 + + G G + ++ + +S G A + +PR Sbjct: 387 LVCLFG----CGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIVAGIPRG 442 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + DVV++ K Sbjct: 443 ARLQVEADRARAIMQTIWAADPDDVVLLAGKG 474 >gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus DSM 14838] gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus DSM 14838] Length = 432 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 190/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++ DSR+ F A+KG +++G+ F A++ G+ V+++ A G Sbjct: 14 TSVTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEAEYALAGDSH--YIL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ L L +LA R + II ITG+ GKTTTKE++ LS G+ NNHI Sbjct: 72 VNNCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D GI E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 132 GVPLTLLRLRAEHDLGIIEMGASHPGDIKELVDITEPEYGIITNVGKAHLEGFGSFEGVI 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + + L+ + L + + S + Sbjct: 192 KTKGELYDYLRERKNSTIFIHHDNL-YLRNMARGLNLISYGSADELYVNGHVTGNSPYLI 250 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 G+S EV IG + N L + I + AL + P+ R Sbjct: 251 --FEWRAGKDGESHEVKTQLIGEYNFANALAAVTIGHFFEVASEKIDAALREYTPQNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM+A+IS + + + +LGDM E+G+ Sbjct: 309 QLKQTADN----TLIIDAYNANPTSMQASISNFRNMEVENK---MLILGDMRELGKDGPK 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +A+ L+ V L G A K P + +Q S G + Sbjct: 362 EHQKIADFLAECGFKDVMLVGEQFAAAKHNFPT------YPDAPAVIEVLQKSKPHGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN +I+ L Sbjct: 416 LIKGSNGIKLSTVIDYL 432 >gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 448 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 111/462 (24%), Positives = 197/462 (42%), Gaps = 36/462 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L+ D + S+ + + + +DSR + + FFAI +G+ +I Sbjct: 21 MKILFNILD--KIFGIKSVVEKNE--IGHVVMDSRKVQKGDLFFAI----NNGNSYIDDV 72 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA LV+ + + V V+D + + +LA R +IAITGS GKT Sbjct: 73 LEKGAALVIAD-----NYKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKT 127 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK+M+ LS T +G+ NNHIGVP T+ ++ + + ELGMS GEI L+ Sbjct: 128 TTKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSS 187 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P I VIT I +HL E + AK E+ + + I DD F + L Sbjct: 188 IVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIV-FGDDPFLKDL----- 241 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G N ++Q++ + E E++ + + G H N M + Sbjct: 242 -----NGIKVGYENNNNYQIKNFTDSDEGLSFEMEEK----KYTVSLNGKHNCINTAMAI 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + + L R ++ + I+++YNA+P S+ ++ Sbjct: 293 VIGKKMGVSYEEISNGLKNLELTPMRFQKIE----KENIIYINDAYNASPISVSFSLETF 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ + + +I VLGDM E+GE +H ++ E + + ++L G + + Sbjct: 349 DKL--YNDALKITVLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYGERMAKALKVIQG 406 Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + + + + + ++ V++K S +I Sbjct: 407 NKEKITHFTNKEDIKNILEKEHGK-TAVLLKGSRGMKLEEII 447 >gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 459 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 208/475 (43%), Gaps = 29/475 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L +F ++ A+QG + +G+S DSR++ P++ F ++G H DGH F+ A+Q Sbjct: 2 LLSFDEVCAAVQGARVCDARGARGFDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQ 61 Query: 63 KGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITG 115 KGA +++ + VA V D L AL LA + A I I ITG Sbjct: 62 KGAVATLIDQRYPHAGEYVAWCTRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGITG 121 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKTT KEM S + A G+ N+ IG+P +L + + + GIFELGM+ GE+ Sbjct: 122 SSGKTTVKEMARAVFSERYRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEM 181 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 R L ++ PH A+IT + AH+ + IA K EIF + T D + + Sbjct: 182 RTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFS--QFTEHSVGFVPDDAYRVF 239 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + G+ + ++ ++ + + G H A+N Sbjct: 240 LSNIPYGRVVVYDQGGRGLATE--------VIDEGLRGSRVLYQGRWIRVPLPGVHNAKN 291 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + + + + + + P GR T + + YNANP SM A Sbjct: 292 ALAVIALAAQVGLPAEEIQRGMERVKPPFGRSHVV-----CASLTFLLDCYNANPDSMAA 346 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LAL 414 A+ + + IS + + VLGDM E+G + H + + + + V++ G A+ Sbjct: 347 ALHLCAHISAVSK---VYVLGDMGELGVTAAEAHYRVCVLAAASDARAVYVFGPEFCRAV 403 Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + V+ E + L + + L GD V+VK S S RL LL +E Sbjct: 404 RKVSWGRKRVYAFALEELSALQETLDAQLRRGDFVLVKGSRSVALERLEPLLRKE 458 >gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides thetaiotaomicron VPI-5482] gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides thetaiotaomicron VPI-5482] Length = 432 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 117/435 (26%), Positives = 191/435 (43%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G V++ A G VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEG--DQRYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL+ + P +IT + AHL F E + Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L K + L+ + A G+ I + Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLM---NIAEGLNLIPYGTEDDLYVNGRITGNSPYLT 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + GKS +V IG + N L + I + +AL+ + P+ R + Sbjct: 251 FEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N TLI ++YNANP SM AA+ + ++ +LGDM E+G S + H Sbjct: 311 KKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVP---HKMLILGDMRELGAESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L VWL G A + + + + +++ G +++ Sbjct: 364 QKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPKGYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN +++ L Sbjct: 418 KGSNGIKLSSVVDYL 432 >gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] Length = 463 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 125/468 (26%), Positives = 204/468 (43%), Gaps = 20/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + I G SIDSR+I E FFA++G DGHD++ A+ G Sbjct: 3 LTLGQIADWIHAEG-DFDSTALAQGYSIDSRTIGAGELFFAVRGERVDGHDYVETALADG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATIIAITGSVGK 119 A VV+ + + V D VL ++ KLA R II +TGS GK Sbjct: 62 AVAAVVSMRWLKPATVEEGKLLRVPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGK 121 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE + LS+ G+ NN G+PL L ++ + + + E+GM+H GEIR L Sbjct: 122 TTTKECIAQVLSAKFHVLKSEGNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALA 181 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P AV++ +AP HL +F GIE IA AK E+ E L G LN DD Sbjct: 182 KIAEPDWAVVSNVAPVHLEHFPDGIEGIARAKYELVEALPADGIAILNGDDERVAAFGKG 241 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G + A + + + + V + G+ ++ +G H N L Sbjct: 242 MRGRTVLYGTLPGLTVRA---VEIEEAGLDGTRFRVGIVGRVQKIHLRLMGRHNVLNALA 298 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + D+ AL P E RG+ +I++ YN+NP +++A + Sbjct: 299 AVAVGLQSGIDLKDCCLALEQMRPTEKRGEVIERHG----AKIINDCYNSNPRALEAMVE 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + RI + G+M E+G + H + +++ + V +L + Sbjct: 355 ALRKTKATR---RIVMAGEMLELGPEGAALHRECG--IAMAGMDVVVGVRGLAASLVEGA 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++ ET + +++ +L +GDVV++K+S + + L Sbjct: 410 ESEGVEANFVETPEAAGEWLRENLREGDVVLMKASRGVRLEKALAGLE 457 >gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 462 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 118/464 (25%), Positives = 191/464 (41%), Gaps = 18/464 (3%) Query: 7 FHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +A+QG + + + VN + DSR P + FF ++G DGH F A +GA Sbjct: 5 LGEAARAMQGTADLQGLENAPVNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V + D+ + + PV VDD L AL +L RL++ ++ ITGS GKTTTKE+ Sbjct: 65 LAIVAHRDLGSIQ---NTPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEI 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L + ++NN +G+PL+L D DF I ELG+++ ++ L ++ P Sbjct: 122 LAEVLKTRFTVGKNHKNWNNQLGLPLSLLMQKGDEDFWIMELGINNTTDMDELGEILLPD 181 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+I + P HL + +A AKA + + L F+N D + L Sbjct: 182 AALILNVGPCHLEGLGDVSGVARAKARLLDYLRAEHRAFINLDYPDLKREAGARPDLNTT 241 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S D + S + + L + + G H +N+ + Sbjct: 242 WFSS------RDPEADCRVSHSRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVALE 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 D L E R C G +T+ID+SYNANP SM+AA+ ++ Sbjct: 296 YGMQPDEIQAGLEKSSLPEQRM----CISRSGDWTIIDDSYNANPMSMQAALETARSLAS 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--H 423 G + VLGDM E+G H DL L + ++ +G ++ + + Sbjct: 352 --GGDLVLVLGDMAELGRDEARAHRDLGRSLCAGAFTALFYNGDNLEHVLSGMNGEGSRK 409 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H + + V++ K S G + Sbjct: 410 AHKIKDVSSFLSAHDKLGCRHGVILFKGSRRAGMENFVQAFKAR 453 >gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12] Length = 426 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 109/459 (23%), Positives = 190/459 (41%), Gaps = 37/459 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LQ + + + + +DSR + FFAI+ +G+ ++ A++K Sbjct: 1 MKLLCQILQ----KRFSHLKELSIQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEK 52 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + V V D + + +LA R K +IAITGS GKTTTK Sbjct: 53 GASIVIADHYFEPHE-----RVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTK 107 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS T +G+YNNHIG+P T+ + +F + E+GMS GEI L + R Sbjct: 108 DIVYAILSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIAR 167 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +IT I +HL E + AK E+ L + + Sbjct: 168 PDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQGHF---------------ITSGDD 212 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I G + + Q + + G H N M + + Sbjct: 213 IFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYEICLEGKHNVMNAAMGIALA 272 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + LS R +R+ + I+++YNA+P SM AA+ L ++ Sbjct: 273 EMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE----YINDAYNASPISMFAALDSLEEM 328 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + AVLGDM E+GE FH ++ + ++ V L G + LP Sbjct: 329 KAERK---FAVLGDMLELGEREIEFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEG 385 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 +++ E+ + + +++ V++K+S +I Sbjct: 386 LYHFESKEAIREYLRKFSEK--TVLIKASRGMKLEDIIE 422 >gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] Length = 511 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 132/516 (25%), Positives = 203/516 (39%), Gaps = 58/516 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ + G P V G + DSR +AP F G DGHDF Sbjct: 1 MIDL-TLKEIADIVGGSLDSVDDPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------------------------LGA 94 A+++GA V+ + + +P V + A Sbjct: 60 KAIEQGAVAVLAARE-------VGVPAIVVQPTGRIEGDGANADIYANDADGSAAAVVRA 112 Query: 95 LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L+ LA + +II +TGS GKT+TK+++ L + +T A GS+NN IG P Sbjct: 113 LSDLAHYVTTKLTSEHDLSIIGVTGSAGKTSTKDLIATILRNDGETVAPPGSFNNEIGHP 172 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R VD + + EL +G I+ LT + P I V+ + AHL F E IA AK Sbjct: 173 YTALRCDVDTKYLVAELSARGIGHIKHLTDIATPRIGVVLNVGTAHLGEFGSRENIAIAK 232 Query: 211 AEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 E+ E L LN DD F + ++ A + + + AD+ + Sbjct: 233 GELVESLPDVSEGGVAVLNADDPFVAAMAKRTTAKVVTYSSANPPAVGADYYATNITLDN 292 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 V + + Q + + A + A S+ + Sbjct: 293 VARPSFTLHAPGVKPVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVADSLSGHRNASA 352 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQ 386 R T+I++SYNANP SM+AAI+ L S + R IAVLG+M E+G+ + Sbjct: 353 HRMDVHTRADGVTIINDSYNANPDSMRAAIAALGYTTSGRPDARSIAVLGEMGELGDDAI 412 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 H L L+ +++ + + G A R I+ S +D I+ L Sbjct: 413 EEHYSLGAELAKFDVHTLIVVGETANGEAMASAAAERGINTMVSRDIDEAIWHIEDVLNT 472 Query: 444 -------------GDVVVVKSSNSCGFYRLINLLLE 466 DVV+VK+SN+ + + LL Sbjct: 473 PPAGVEDWSAREMKDVVLVKASNAQRLWLVSERLLN 508 >gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] Length = 431 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 128/444 (28%), Positives = 197/444 (44%), Gaps = 18/444 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + ++ D+R + F A+KG +D HDF +A+ GAG ++V+ ++ + +P Sbjct: 1 MITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSKRLL-----VDVPQ 55 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL + A R + ++A+TGS GKT+ KEM L G++NN Sbjct: 56 IVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNN 115 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGVPLTL R+ + DF + ELG +H+GEI + T L RP A++ +A AHL F + Sbjct: 116 DIGVPLTLLRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALVNNLAAAHLEGFGSLAG 175 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 +A AK EIF GL G +N D + + + G ++ DF + Sbjct: 176 VAQAKGEIFAGLPANGIAIINADSHDWSHWQTTLAHKQVWRFSPLG-GEDIDFYATDLRI 234 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + V G H N L + + AD+D LS G Sbjct: 235 EQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADLDAVRVGLSQLKAVPG 294 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R A L+D++YNAN SM AA+ VL+++ G R+ V GDM E+GE + Sbjct: 295 RLFPLVLADG---KLLLDDTYNANVGSMTAAVQVLAEMP----GYRVMVAGDMAELGETA 347 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H + L I V G + A S H + L + + L Sbjct: 348 EDCHRQVGNAAKLSGIDKVLTVGTLSQLISSA---SGHGEHFHDKSALTARLAALLSQHQ 404 Query: 446 V--VVVKSSNSCGFYRLINLLLEE 467 V V++K S S ++ L E+ Sbjct: 405 VITVLIKGSRSAAMESVVQALQEK 428 >gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 509 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 129/514 (25%), Positives = 210/514 (40%), Gaps = 58/514 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + D+ + G P V G I DSR + F A+ G DGHD+ Sbjct: 1 MIPL-SIADIAEITGGSLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94 A+++GA V+ + +P V V+ A Sbjct: 60 KAIEQGAVAVLAARP-------VGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQA 112 Query: 95 LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L+ +A R I+ +TGS GKT+TK++L + T A GS+NN +G+P Sbjct: 113 LSDIAREVTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLP 172 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R F + E+ +G IR LT + P + V+ + AHL F E IA AK Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232 Query: 211 AEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 E+ + G LN DD F + ++ A + + + +A + + Sbjct: 233 GELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQLDD 292 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 V + + + Q + + + +D + A ++ + Sbjct: 293 VARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQNASE 352 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386 R + T ID+SYNANP SM AAI+ L+ + + R IAVLG+M E+G + Sbjct: 353 HRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAV 412 Query: 387 SFHIDLAEVLSLYNISHVWLSG--FHVLALKDAL-PRSIHVHYSE-------TMDGLFLF 436 + H L EVLS Y++ H+ G ++ A+ +A R I+ S ++ + Sbjct: 413 AAHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRV 472 Query: 437 IQSSL------VDGDVVVVKSSNSCGFYRLINLL 464 + + DVV++KSSN+ +R+ L Sbjct: 473 APAGIEDWTGREAKDVVLIKSSNAQRLWRVAEQL 506 >gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 509 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 129/514 (25%), Positives = 211/514 (41%), Gaps = 58/514 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + D+ + G+ P V G I DSR + F A+ G DGHD+ Sbjct: 1 MIPL-SIADIAEITGGNLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94 A+++GA V+ + +P V V+ A Sbjct: 60 KAIEQGAVAVLAARP-------VGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQA 112 Query: 95 LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 L+ +A R I+ +TGS GKT+TK++L + T A GS+NN +G+P Sbjct: 113 LSDIAREVTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLP 172 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T R F + E+ +G IR LT + P + V+ + AHL F E IA AK Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232 Query: 211 AEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 E+ + G LN DD F + ++ A + + + +A + + Sbjct: 233 GELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQLDD 292 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 V + + + Q + + + +D + A ++ + Sbjct: 293 VARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQNASE 352 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386 R + T ID+SYNANP SM AAI+ L+ + + R IAVLG+M E+G + Sbjct: 353 HRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAV 412 Query: 387 SFHIDLAEVLSLYNISHVWLSG--FHVLALKDAL-PRSIHVHYSE-------TMDGLFLF 436 + H L EVLS Y++ H+ G ++ A+ +A R I+ S ++ + Sbjct: 413 AAHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRV 472 Query: 437 IQSSL------VDGDVVVVKSSNSCGFYRLINLL 464 + + DVV++KSSN+ +R+ L Sbjct: 473 APAGIEDWTGREAKDVVLIKSSNAQRLWRVAEQL 506 >gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] Length = 466 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 198/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG Sbjct: 200 TAHLGEFGGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAEIRE---AAKSHQIMSFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L ++ Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 466 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 199/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIRE---AAKSHQIMSFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L ++ Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L+ +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLAQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] Length = 454 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 135/462 (29%), Positives = 200/462 (43%), Gaps = 22/462 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + Q G G VN ++ D+R I P F A++G +D HDF+ A Sbjct: 2 MW-LSQIAQWTGGALHGD--DLKVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNG 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V + V V D L +LA + +A+TG+ GKTT K Sbjct: 59 GAIAALVEHEQDCFDN-----VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVK 113 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM L G++NN +GVPLTL R+ + + + ELG + GEI + + L R Sbjct: 114 EMAATMLGEGTLATN--GNFNNDVGVPLTLLRLRAEHRYAVIELGANAPGEIAWTSSLTR 171 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T + AHL F ++ IA AKAEIF G + G +N DDSF + K+ A G Sbjct: 172 PQVVLVTNVTGAHLEGFGSMQGIADAKAEIFTGCTQGGQAIVNNDDSFADFFAEKARAAG 231 Query: 244 -IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 S +S A L + E LQ V+ G H N LM Sbjct: 232 LTVVRVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAVLVPLPGAHQVSNALMACAA 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L A + + L+ P GR + G T++D++YNANP S++AAI L+ Sbjct: 292 VRALGASLPQVLPRLAALKPVPGRM----HIQSAGTGTVVDDTYNANPGSVRAAIDWLAA 347 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ VLG+M E+G + S L E I+ + + A A Sbjct: 348 QPA----PQMLVLGEMGELGPQADSLVEALGEYAQQAGIAGLVVM---TGAAAAARGYGE 400 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ++ + L G V+VK S S G ++ LL Sbjct: 401 AANIAKDYQQAANWSAPVLEQGGTVLVKGSRSAGMEAVVRLL 442 >gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia neofelifaecis NRRL B-59395] gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia neofelifaecis NRRL B-59395] Length = 438 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 129/459 (28%), Positives = 197/459 (42%), Gaps = 27/459 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + A G G P V+ SIDSRS P + F I DGHDFI AVQ GA Sbjct: 5 ASQIAAATGGTLHG--PDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAP 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + + A +L V D AL L R +++ +TGSVGKT+TK++L Sbjct: 62 VYLTDR---APDPALGATAVQVADTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLL 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + +T A S+NN +G+PLTL P D + + E+G +G I L + P + Sbjct: 119 AGVLGTTFRTAASEKSFNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSIASPTV 178 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V+T + HL F ++++A AK E+ E L G LN D + +++ A Sbjct: 179 GVLTRVEAVHLEMFGSLDDVAQAKGELVEALPADGLAVLNADHPVVAAMTSRTSA----R 234 Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + ++G AD + E ++ + + V G H N L Sbjct: 235 VLTYGVDPGADVRATDIVLDDELRASFTLHSPWGTTAVRLGARGEHQVSNALAAAAAGGG 294 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + ++ + L G R + T+I+++YNANP SM A +S L++I Sbjct: 295 IGVPIEKIAEGL---LGANLSGLRMELSTTAAGVTIINDAYNANPTSMAAGLSALARIDA 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 GRR AVLG M E+G+ S + H ++A+ + V V Sbjct: 352 ---GRRFAVLGTMAELGDDSAAAHREVADQAVALGV-TVIAVDEPAY--------GAGVT 399 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + +DG + L GD V+VK S R+ L Sbjct: 400 HVSGVDGAVDAL-GDLRSGDAVLVKGSRVAALERVAQAL 437 >gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus LMS2-1] Length = 463 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 131/473 (27%), Positives = 211/473 (44%), Gaps = 21/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T ++ + ++ + V G++ DSR + P F + G DGH+FI Sbjct: 1 MMKM-TLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHEFIPA 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVG 118 A GA V D + +P V D L A+ KLA ++ ++AITGS G Sbjct: 59 AAAAGAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+M L++ +YNN IGVP+T+ M + + + E+GM G++ L Sbjct: 117 KTTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHAL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + L P +AVIT I AH+ F +IA AK EI +GL++ GT N D+ L Sbjct: 177 SSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVS 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ +FG + Q + +G + N L Sbjct: 233 RAKQVTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMGEYNVVNALA 291 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + + KAL+ F R + + ++ + YNANP +MKA I Sbjct: 292 ALLVGRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNANPTAMKAVIH 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 S+ GR IAVLGDM E+G+ S++ H LA+ L + I V+L G + AL +AL Sbjct: 349 DFSEF--QTAGRHIAVLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEAL 406 Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + +Q+ + D+V++K+S+ ++ L+ Sbjct: 407 TTKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 459 >gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] Length = 463 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 119/455 (26%), Positives = 195/455 (42%), Gaps = 14/455 (3%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +L + + + + + IDSR + + FF I+G ++DGH+F+ A Sbjct: 3 LTLCELEEQLMGSSDLPSAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDA 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVV+ M P V D + AL ++A R++S A +IA+TGS GKTT K Sbjct: 63 GAVAVVVSQFMPEFE---DKPTIMVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVK 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS + + NN +G+PL++ + + + ELG+S ++ L + + Sbjct: 120 EMLAHVLSGSGSVHKNFMNLNNQLGLPLSMLEATGEETYWVMELGISLPHDMGELGPIAQ 179 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A++ I PAHL +E +A K+ +F+ + G D ELL ++ + Sbjct: 180 PDMAIVHNIGPAHLEGLGSLENVADQKSSLFKYIRPEGVALCCKDH---ELLWEAANKIS 236 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S + ++ ++ EV+ G H A+N Sbjct: 237 KPVPFSSQDENAEYYSTLLHTLPDGSGRFLIKAGEETAEVILPTCGSHFAENAAAVTCAA 296 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L ++ + L+ + R + G +TLID+SYNANP SM AI +I Sbjct: 297 HQLGMELTEIAERLATVELPKQRFHCH----THGKWTLIDDSYNANPLSMNRAIDTAKRI 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + + + VLGDM E+GE + H DL ++ + G H + S Sbjct: 353 A--DDRPLVLVLGDMLELGEEAGCAHCDLGSKIAETKPDATFYHGKHYSEVASQTNGSTL 410 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 V + I + VV+ K S SC Sbjct: 411 VP-VKQPIEFLNGIHELGLSDAVVLFKGSRSCHME 444 >gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces viscosus C505] gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces viscosus C505] Length = 483 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 203/483 (42%), Gaps = 25/483 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G IG P V G + DSR A F A+ G DGH + A Sbjct: 7 LSLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDL 64 Query: 64 GAGLVVVN-----TDMVASIGSLSIPV--FGVDDVLGALNKLAVAARLRSK--------- 107 GA +V+ ++ + +P+ V+D + AL LA + Sbjct: 65 GAVGAIVSDLEAARSGLSQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQAAAEQGDR 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T++A+TGSVGKTTTK++ L++ T A S+NN IG+PLT+ + + E+ Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G S G I +LT + A + I AH+ F IE +A+AKAEI GL G LN Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPEGIAILNA 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286 DD+ + + + + + AD + + ++ ++ L G + Sbjct: 245 DDARAAA---MAELAPARVLTFSARGRQADLRAENVDLDAAARAAFDLHLPGLAEPRRVQ 301 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + L A + + A + R + G LID+SY Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGLAPELVADRLGSVSIESPHRMDISELSGDLLLIDDSY 361 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NAN S ++ + G+ RR+ V+ +M E+GE S + H E+ + + + Sbjct: 362 NANIDS--MTAALAVLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAMLIG 419 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G AL+ A R + V + I + L DGD V+VK SN G +RL + L E Sbjct: 420 IGSTQEALEAARARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRLADHLKE 479 Query: 467 EFP 469 P Sbjct: 480 VRP 482 >gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga petrophila RKU-1] gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga petrophila RKU-1] Length = 426 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 108/446 (24%), Positives = 185/446 (41%), Gaps = 24/446 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++S+ + + F A+KG +DGHDFI A++ GA V+ V S Sbjct: 3 DLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD----- 57 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +F V+ + AL KLA T++ ITGS GKTTTKE+L L + + + G+ Sbjct: 58 RIFLVESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N G+PL++ + + E+ S G+I L + P +AV+ + AHL F Sbjct: 118 NTEYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNAHLEFFGTR 177 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I K EI + ++ T +DD + F + D L+ W Sbjct: 178 ERIMETKMEIIKHSKENATAVTLFDDPDLRR------EVPCYRKTLFFGKEGGDSVLKDW 231 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + E + V G L I + L Sbjct: 232 WYYEGSTIAEFEAFDSLFTVKLSGYWNG-----GQLLNIAASLCVMRALGETVDIFDLAS 286 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + ++D++YNA+P + + +I L + GRR AV+G M E+GE Sbjct: 287 LKTVPGRFNVREKKDVLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGE 342 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S+ FH +L E L++ + +++LS +K + S+ + + + S + + Sbjct: 343 RSKEFHEELGERLNVLDGVYIFLSEPEAEWIK----SKKIILKSDDPEKIAKDLASRVTE 398 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 GDVV+ K+S + +++ + +E Sbjct: 399 GDVVLFKASRAVRIEKVLEMFEKELE 424 >gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. K] gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter sp. K] Length = 468 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 205/466 (43%), Gaps = 6/466 (1%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P +T +L A +G +G P V G+S D+R+++P + F A+KG +D HD + A Sbjct: 7 TPQFTPDELAAATRGRWLGAPPSA-VAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +VV+ A+ + P V D L AL +A R R +I +TGS GKTT Sbjct: 66 AAGAAALVVSEAWAAAHPAPPRPALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+EM+ L++ G+ NN +GVPLTL + + E+GM+H GEI L + Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + V+T APAHL ++ +A AKAE++EGL G +N DD + + A Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADD---ARMLKRGVA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + + + L + EV H G A N Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 A T + G+R R L+D+ YNANPASM AA+ VL Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSAALDVLR 362 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419 ++ R AVLGDM E+G H L + ++ + G A Sbjct: 363 DLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAAGAA 422 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++E +D L F++ L DV++VK S RL+ L Sbjct: 423 GLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468 >gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis C231] gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis 1002] gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis I19] Length = 516 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 117/494 (23%), Positives = 182/494 (36%), Gaps = 33/494 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + + + + G G P V G + DSR + F A+ G DGHD+ Sbjct: 1 MIEL-SLGTIAEIVGGSLTSGTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFG---------------------VDDVLGALNK 97 AV GA +++ ++ + + V V VL AL Sbjct: 60 KAVADGAVGCLLSRPVMDGMRPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGL 119 Query: 98 LAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 +A + ++ +TGS GKT+TK+M+ S+ T A GS+NN IG P T Sbjct: 120 IARHVIDILTQKGLVVVGVTGSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTAL 179 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + + F I E+ +G I L + P I V + AH+ F IA AK E+ Sbjct: 180 KCTAETQFLISEMSARGIGHIAHLAAIAPPKIGVELNVGTAHVGEFGSQTAIAQAKGELV 239 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E L + G LN DD + +++ A S A Sbjct: 240 EALPENGEAVLNADDPLVAQMASRTRAR---VTSYSAVSTAAAVYATDITFDHNACARFR 296 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + Q + A +D+ A S+ R Sbjct: 297 LHIEDENVHQITLLVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNRHVGASAHRMSLVS 356 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 T+ID++YNAN SM+A +S L + AVLG M E+G SQ+ H + Sbjct: 357 CPRNITVIDDAYNANNESMRAGLSALVHTARSRGSSAWAVLGPMGELGRESQTVHAAIGA 416 Query: 395 VLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVVKS 451 L + + G AL A ++ + + L DVV+VK+ Sbjct: 417 ELKNIGVHGLIAVGENSDSRALATAAEKTGITTLVARTNLEAAHKLAPLLHADDVVLVKA 476 Query: 452 SNSCGFYRLINLLL 465 SN+ + + + L+ Sbjct: 477 SNAFALWEVADELV 490 >gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 483 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 130/483 (26%), Positives = 198/483 (40%), Gaps = 25/483 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G IG P V G + DSR F A+ G DGH + A Sbjct: 7 LSLSQIAAAVGGRLIG--PDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAHLGSAGAL 64 Query: 64 GAGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK--------- 107 GA +V+ A G S+ + V+D + AL LA + Sbjct: 65 GAVGAIVSDLEAARSGLSQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRAAADRGER 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T++A+TGSVGKTTTK++ L+ T A S+NN IG+PLT+ + + E+ Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAPSGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G S G I +LT + A + + AH+ F IE +A+AKAEI GL GT LN Sbjct: 185 GASGPGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTTILNA 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286 DD+ + + + + + AD + ++ ++ L G Sbjct: 245 DDARAAA---MAELAPARVLTFSSQGRAADLRTENVVLDVAARAAFDLHLPGLDEPRRVQ 301 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 L A + + A + R + G LID+SY Sbjct: 302 LSVAGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESPHRMDVSELGGDLLLIDDSY 361 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NAN S ++ + G+ RR+ V+ +M E+GE S + H E+ + + + Sbjct: 362 NANIDS--MTAALAVLPALAGDRRRVVVVSEMLELGESSAADHARTGELAAQAGAAMLIG 419 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G AL+ A R + V + I + L DGD V+VK SN G +RL + L E Sbjct: 420 IGSTQEALEAAGARGVEVVGFDDAATAISQIDALLSDGDAVLVKGSNGSGAWRLADHLKE 479 Query: 467 EFP 469 P Sbjct: 480 VRP 482 >gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans DSM 12145] gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans DSM 12145] Length = 431 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 115/436 (26%), Positives = 191/436 (43%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 +S D+R + FFA+KG ++D + F A+ GA +V+ + V Sbjct: 15 SVSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDKQDLPKHPQ----FIFV 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DDVL L LA R + +I +TG+ GKTTTKE++ LS KT A +G+ NNHIG Sbjct: 71 DDVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + D + I E+G +H EI L + P +IT + AHL F G E + Sbjct: 131 VPLTLLAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGLITNVGKAHLEGFGGFEGVKK 190 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K G D L + + + + ++ K Sbjct: 191 GKGELYDFLSKNGGTVFINRD---NLHLQEMARSRSFKEVIYYGTSSDNYVFGKLIANDP 247 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +E EV G + +N+L + I L + ++ + P+ R + Sbjct: 248 YLTVEWSDGENKDEVQSQLTGIYNFENILAAIAIGKKLGLTTQQIHEGINSYKPQNNRSQ 307 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N T+I + YNANP+SM AI ++++ + + +LGDM E+GE S + Sbjct: 308 IIKTERN----TVIGDFYNANPSSMAVAIENIARLEADNK---VLILGDMFELGEESGAE 360 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + E I+ V G + + + ++ L ++ + V +++ Sbjct: 361 HRAVIEKAEKLGIAKVLFVGQEFFK-----NSNQKSVFLKNVEELRTYLHENPVHQALIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K S ++I L Sbjct: 416 LKGSRGMKLEQVIAYL 431 >gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] Length = 452 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 132/465 (28%), Positives = 196/465 (42%), Gaps = 22/465 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W + Q G G VN ++ D+R+I P F A++G +D HDF+ A Sbjct: 1 MW-LSQVAQWTGGTLQGD--DLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTG 57 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + + + V D L +LA + +A+TG+ GKTT K Sbjct: 58 GAIAALVDREQDSFESA-----VRVADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVK 112 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EM L G++NN +GVPLTL R+ + F + ELG + GEI + + L R Sbjct: 113 EMAAAMLGDGTLATH--GNFNNDVGVPLTLLRLRAEHRFAVIELGANAPGEIAWTSSLTR 170 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T + AHL F ++ IA AKAEIF G G +N DDSF + K+ A G Sbjct: 171 PQVVLVTNVTGAHLEGFGSMQGIADAKAEIFGGCTPGGQAIINNDDSFADFFAEKARAAG 230 Query: 244 -IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 S +S L + E LQ V G H N LM Sbjct: 231 LTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAVTVPLPGAHQVSNALMACAA 290 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V L ++ + L+ P GR ++D++YNANP S++AAI L+ Sbjct: 291 VRALGVNLPQVLPRLAALKPVPGRMHIQAAGAGA----VVDDTYNANPGSVRAAIDWLAA 346 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ VLG M E+G + S +L E +S + A A Sbjct: 347 QPA----PQMLVLGAMGELGPQADSLVEELGEYARQAGLSGLV---AMTGAAAAARGYGE 399 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +E + L G V+VK S S G ++ L +E Sbjct: 400 AAKIAEDYQQAASWSAPVLAQGGTVLVKGSRSAGMEAVVQRLTQE 444 >gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria MC40-6] gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria MC40-6] Length = 468 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 114/476 (23%), Positives = 194/476 (40%), Gaps = 27/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ P +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118 + + + + + V+ + AL LA R R ++A+TGS G Sbjct: 60 AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113 Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTT KEM+ ++ A G+ NN IGVPLTL R+ + ELGM+H GE Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L L P +A++ H + +E +A A + L G DD++ + Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIW 233 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + A I F + + + +M V +G H A+N Sbjct: 234 R---VAATGNPILDFALHDAERQVEAQVTGRLHGGELAIDTPAGAMTVRLRALGEHNARN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354 L ++ + L F P +GR + + + T++D++YNANP SM+ Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMR 350 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + L + ++ V+VK S R+++ L + Sbjct: 407 CTAYGDTAR--HFGDVGALVTALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides helcogenes P 36-108] gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides helcogenes P 36-108] Length = 432 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 120/435 (27%), Positives = 190/435 (43%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A+++G+ +V+ A G+ VD Sbjct: 16 VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAGNTH--YILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L KLA R + II ITG+ GKTTTKE++ LS G+ NNHIGV Sbjct: 74 NCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ D + E+G SH G+IR L + P +IT + AHL F + + Sbjct: 134 PLTLLRLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNVGKAHLEGFGSFDGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + G + D LK + L + + + + Sbjct: 194 KGELYDYLRRRGDSTIFIDHDN-PYLKEIAWGLNMIPYGTEDELYVNGRITGNSPYLT-- 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + +G+ EV IG + N+L + I + KAL+ + P+ R + Sbjct: 251 FKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGVEPAKIDKALAEYVPQNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A N LI ++YNANP SM AAIS + + + +LGDM E+G+ S H Sbjct: 311 KKTADN----ILIVDAYNANPTSMMAAISNFRNMQAENK---MLILGDMRELGKDSAEEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L +V L G A + L +Q G +++ Sbjct: 364 QKIVDYLEKCGFGNVILVGEQFAATRHG------YLTCPNASALIEALQKDRPAGKTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN + + L Sbjct: 418 KGSNGIKLGTITDFL 432 >gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] Length = 425 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 119/436 (27%), Positives = 198/436 (45%), Gaps = 27/436 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR+I FFA+KGP+++G++F + A+ +GA L VV+ V Sbjct: 16 VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEGDFPDEP----RCIRVP 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA+ RL+ KA II +TGS GKTTTKE++ LS +T A G+ NNHIGV Sbjct: 72 DALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + I E+G +H GEIR L+ + +P IT AHL F G+E + Sbjct: 132 PLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFGYITNFGKAHLEGFGGVEGVIRG 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E++E L + G D + K +A + + + K ++ Sbjct: 192 KSELYENLMERGATIFMNADDPVQFEKLAGYANCVG-------FSTRNPAYMQIKNLTDG 244 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + +Q+ ++ G + + +A++ Sbjct: 245 PAVRLQVDDVVVQTQLTGRYNFSNCAVSACI------GKHFGVPAEAIAEALESYIPANN 298 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +G ++ ++YNANP SM AA+ L+++ + IA+LGDM E+G + + H Sbjct: 299 RSQLIERGNLRILLDAYNANPTSMAAALENLAEMDSPRK---IAILGDMFELGAEAAAEH 355 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVV 448 + N ++L G H + L ++++ + G V+ Sbjct: 356 EAVGRFALSKNPEKLYLVGQHFYDTA------LPAARFPDFAALSRELKANPLTGPATVL 409 Query: 449 VKSSNSCGFYRLINLL 464 +K S R++ L Sbjct: 410 IKGSRGMALERVLEFL 425 >gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus Lc 705] gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus Lc 705] Length = 462 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 209/469 (44%), Gaps = 20/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + ++ + V G++ DSR + P F + G DGH+FI A Sbjct: 3 MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHEFIPAAAAA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122 GA V D + +P V D L A+ KLA ++ ++AITGS GKTTT Sbjct: 62 GAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+M L++ +YNN IGVP+T+ M + + + E+GM G++ L+ L Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +AVIT I AH+ F +IA AK EI +GL++ GT N D+ L Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVSRAKQ 235 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ +FG + Q + +G + N L L + Sbjct: 236 VTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMGEYNVVNALAALLV 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + KAL+ F R + + ++ + YNANP +MKA I S+ Sbjct: 295 GRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418 GR IAVLGDM E+G+ S++ H LA+ L + I V+L G + AL +AL Sbjct: 352 F--QTAGRHIAVLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409 Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H + + + +Q+ + D+V++K+S+ ++ L+ Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 458 >gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria IOP40-10] gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria IOP40-10] Length = 468 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 114/476 (23%), Positives = 194/476 (40%), Gaps = 27/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ P +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118 + + + + + V+ + AL LA R R ++A+TGS G Sbjct: 60 AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113 Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTT KEM+ ++ A G+ NN IGVPLTL R+ + ELGM+H GE Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L L P +A++ H + +E +A A + L G DD++ + Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIW 233 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + A I F + + + +M V +G H A+N Sbjct: 234 R---VAATGNPILDFALHDAERQVEAQVTGRLHGGELAIDTPSGAMTVHLRALGEHNARN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354 L ++ + L F P +GR + + + T++D++YNANP SM+ Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMR 350 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + L + ++ V+VK S R+++ L + Sbjct: 407 CTAYGDTAR--HFGDVGALVTALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-2A] gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-2A] Length = 437 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 116/441 (26%), Positives = 194/441 (43%), Gaps = 24/441 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GIS D+R++ F A++G +++G+ + A+ GA V+V+ + ++G+ S Sbjct: 19 SGISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDPKLKNLGANS---IV 75 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L L +LA R + II ITGS GKTTTKE++ LS K A G+ NNHI Sbjct: 76 VEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNLNNHI 135 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + I E+G +HL EI+ L + P+ IT AHL F G++ + Sbjct: 136 GVPLTLLELTKEHQIAIIEMGANHLDEIKNLCCISLPNWGYITNFGKAHLEGFGGVDGVI 195 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ L + L D ++ + SFG K FQ+ ++ Sbjct: 196 KGKSELYNHLIEQQQKILINGDDPLQI-----KQTKNYPVSSFGHGKENTFQISTNEKDD 250 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E + G + N+ + I + KA+ + R Sbjct: 251 ELQLT-----YNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPTKSIQKAIQKYQATNNRS 305 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 ++ + ++I ++YNANP SM+ AI +I+ + ++GDM E+G S+ Sbjct: 306 QKIKIKNT----SIILDAYNANPTSMEHAIKAFKKIATQKS---VLIMGDMKELGVESEK 358 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DV 446 H + + + L G KD V + ++ FI + D Sbjct: 359 EHQQIVDYCLEMKFEQIDLIGPLFSKTKDVADM---VRKHKNLNSFTNFINAQSQLDFDH 415 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 +++K S S L+ L + Sbjct: 416 IMIKGSRSMKLETLLPLFESK 436 >gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 457 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 216/470 (45%), Gaps = 22/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P ++ H++ + IG ++ I+I+S I Q F A+ G +DGHDF A Sbjct: 1 MIP-FSLHEIAPVLNAKYIG--MDLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++VN ++ L +P V D AL LA R + + +IAITGS GKT Sbjct: 58 IAAGAQALLVNHHIL-----LDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM T L T A G++NN IGVP+TL R+ +F I ELG S GE+ L+ Sbjct: 113 SVKEMTTSILKECGHTIATQGNFNNMIGVPITLLRLTKKNNFAIIELGTSSPGELVQLSK 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V ++A++ + PAHLS F + +I K +IF L+ GT +N D L + K Sbjct: 173 IVAANVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGIINADSHALSLWR-KPL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S + DF + + + VV +G H N L Sbjct: 232 KGKSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLSMLGTHNVANALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A++ + L GR + L+D++YN+N SM +AI VL Sbjct: 292 ALAFSVGANLSEVVYGLENIKTLPGRLF---PIILGEGKLLLDDTYNSNVGSMISAIHVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + G RI V+ DM E+G+ S +H + ++++ NI+ + G + Sbjct: 349 TTMP----GYRILVVSDMLELGKYKSIKYHCYIGKLIATTNINKILTIGSVSCCISKICG 404 Query: 420 RSIHVHYSETMDGLFLFIQSSLV-DGDV-VVVKSSNSCGFYRLINLLLEE 467 + + + L ++I+ L + V+VK S ++IN + +E Sbjct: 405 KGK---HFRNKNKLIIYIKQMLSIHNSISVLVKGSRGFKMEQIINAIRDE 451 >gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135] gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135] Length = 821 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 108/468 (23%), Positives = 187/468 (39%), Gaps = 24/468 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + G ++ I DSRS+ + FFA+K DGH +I QK Sbjct: 4 TIEEITAILGAKRTGTTSST-IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G V+N A+ V + L +L +LA R + + +I ITGS GKT K Sbjct: 63 GVRNFVINEIPEAASSYTDANFLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTVVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + GIFE G+S +GE+ L +++ Sbjct: 123 EWLYQILSPDRTITRSPRSYNSQIGVPLSVWLMNEHTELGIFEAGISEMGEMEALRPIIQ 182 Query: 184 PHIAVITTIAPAHLSNF-----SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 P I ++T I AH NF +E++ K + + + Sbjct: 183 PTIGILTNIGGAHQENFSSVQDKCMEKLQLFKDCDVIVYNGDNELITSCVTKSLFTAREI 242 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + F + D + ++ + G E I +N L Sbjct: 243 AWSTKDSERPLFIEKILKDDT---------GTTIKYRYLGFFKEYRIPFIDDASIENSLN 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L +T + + P R + TLI++SYN++ AS+ A+ Sbjct: 294 CLAVALYLMVPPETIAERMLHLEPI---AMRLEVKEGKNGCTLINDSYNSDFASLDIALD 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + + S R +L DM E G+ S+ + +A+++ + H+ G + A + Sbjct: 351 FMMRRSEDKNRERTLILSDMLESGQTSKLLYRQVADLVHSRKVDHIIGVGEEISAAANRF 410 Query: 419 PRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 I + L + + L + D +++K + F + + L Sbjct: 411 E--IQKDFFANTSELLNSGLLNQLHNED-ILIKGARVFHFDDITDALE 455 >gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 469 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 162/471 (34%), Positives = 248/471 (52%), Gaps = 10/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT L A G G P V G+SID+R++AP + F A+ G + DGH + A Sbjct: 1 MTVLWTRAALQDATGGTFTGQAP-VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +++ V S + V D + ALN L AR R ++A+TGSVGKT Sbjct: 60 LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML +AL +I T+ SYNNH GVPLTLAR+P+D F + E+GM+H GEI L Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP +A++TTIA AHL + +E IA K+++ I + DD+ + + A+ Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDL-IATLPPAGIAIVPDDATGQPIFAEQA 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T++ G+ ++ + +E S V + G+S+ V + G H+ +N L Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ L AD+ TA AL+ F P GRG + L+DESYNA+ S++++++VL Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALKPILGGRAA--LLDESYNASVLSVRSSLAVL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + R+AVLGD+ E+G +++ H L L + V+ SG + L D LP Sbjct: 357 GLLPATR---RMAVLGDIRELGAFARAEHESLL-SAVLAHADLVFCSGPDMKYLFDLLPP 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S ++ L ++ ++ DV++VK S ++ +L PA Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVAVLTA--PAT 461 >gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Psychroflexus torquis ATCC 700755] gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Psychroflexus torquis ATCC 700755] Length = 427 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 115/437 (26%), Positives = 190/437 (43%), Gaps = 26/437 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + I D+R I FFA+KG ++DG+ + A++KGA V++ + Sbjct: 15 SSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRK-----IL 69 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V +VL L LA R + K I+AITGS GKTTTK++++ LS K A G+ NNHI Sbjct: 70 VKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGNLNNHI 129 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL ++D GI E+G +H EI L + P+ IT AHL F G+E + Sbjct: 130 GVPLTLLSFTAELDLGIIEIGANHQKEIESLCKIAEPNYGYITNFGKAHLEGFGGVEGVI 189 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L + D ++ YS G+ +D ++ Sbjct: 190 KGKSELYDYLIHHDGLIFFNRDDDIQV-----KKAVNYKNYSIGEKPLSDCRVTFMDAN- 243 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 V+L+ +++ IG + +N+ +G+ D +A+ F Sbjct: 244 ----PFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKDEIKEAIENFE----AE 295 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + + ++ ++YNANP SMKAA+ ++S + +LGDM E+GE + Sbjct: 296 EMRSQVIEKNDLKILLDAYNANPTSMKAALESFKKMSSQSQ---TVILGDMFEIGETTLE 352 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDV 446 H + + N + G H ++ T L FI Sbjct: 353 EHRQILKTCETLNFDSILACGEHFSEASKGFE---NISSFRTKKDLTAFISKYKPKASSF 409 Query: 447 VVVKSSNSCGFYRLINL 463 +++K S L++ Sbjct: 410 ILIKGSRGMQLETLMDA 426 >gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Riemerella anatipestifer RA-YM] gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer RA-GD] Length = 424 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 104/438 (23%), Positives = 195/438 (44%), Gaps = 27/438 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N +SIDSR+IA + FFA G +++ A+ KGA V+V ++S +F Sbjct: 14 NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQKEYE---NISKNIFY 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V L L +L++ R + IIA+TGS GKTT+KE++ LS K G+ NNHI Sbjct: 71 VPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + + + E+G +H EI L + +P +T AHL F G+E + Sbjct: 131 GVPLTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPDYGYVTNFGKAHLEGFGGVEGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+++ L+ ++L + + ++ + K + Sbjct: 191 KGKSELYDYLK----------KENKQILVNANDTIQVEKTKDYSKIICFGTLQSDYDFQL 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 V L + E++ G + N+ + + D + +A+ + P R Sbjct: 241 FYDNQRVGLIFEGEEMISQLTGAYNFTNISAAVTLGLHFGIDKNLIKEAIQEYTPTNMRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + +G TL+ ++YNANP+SM ++ + G + ++GDM E+G+ S+ Sbjct: 301 QIMQ----KGDKTLVLDTYNANPSSMAVSLENFALF----NGCKTVIIGDMLELGDASKE 352 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + N + G H ++ + L +++++ + + Sbjct: 353 EHKTILQKAQSLNFDKIITVGKHFSSV------NTQGTAFLNTQQLSVYLKNQPLTTKNI 406 Query: 448 VVKSSNSCGFYRLINLLL 465 ++K S +L++ ++ Sbjct: 407 LLKGSRGIALEKLLDDIV 424 >gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter sp. PRwf-1] gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 505 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 116/495 (23%), Positives = 189/495 (38%), Gaps = 41/495 (8%) Query: 4 LWTFHDLLQAI---QGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 +WT LL A G IG I D+R I + F AI G ++DGH F Sbjct: 12 IWTPEQLLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSF 71 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115 + AV+KGA +V+ + +++P VDD A ++A R + +IA+TG Sbjct: 72 VASAVEKGAIATIVSQPLSE----VNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTG 127 Query: 116 SVGKTTTKEMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 S GKTT KEML + T G+ NN GVP+ L + + + EL Sbjct: 128 SSGKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLEL 187 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G +H+GEI + +V+P +A I I AHL F G + IA KAEI++ L + T + Sbjct: 188 GANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQPLTQASTAVVPC 247 Query: 228 DDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 DD + + L AK H I + + + + ++ + Q Sbjct: 248 DDDYSDQLMSTAKQHTDTIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAIEGK 307 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDE 344 + M + + L A +S +G + G L Sbjct: 308 APAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRLGQHH 367 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + ++ + + EG RI VLGD+ E+G+ + S H L E ++ + ++ Sbjct: 368 IIDDTYNANPNSMRAAADVLAAQEGTRILVLGDIGELGDDAVSEHYKLGEAIANKAVDYM 427 Query: 405 WLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS-----------SLVDGDVVVVKS 451 +G + +T L + + K Sbjct: 428 LCAGEFAKDTVAGASSQGMTQAYSFDTKADLLPKLIELVQTQQQQGQLCTLL-----FKG 482 Query: 452 SNSCGFYRLINLLLE 466 S + LI+ L + Sbjct: 483 SRTTTMETLIDDLTQ 497 >gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] Length = 500 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 135/510 (26%), Positives = 208/510 (40%), Gaps = 61/510 (11%) Query: 1 MNP-LW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M +W + L+ + Q I D+R I + F AI+G ++DGHD+ Sbjct: 1 MTAYIWQSANLTEALKDLNPTFHSDFTQTS-KKIITDTRKIEQGDIFLAIQGDNFDGHDY 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115 + A KGA L +V+ + +P V D AL KL R + ++AITG Sbjct: 60 VKTAKDKGAVLAIVSRAV-----ESDLPQLVVTDTKLALGKLGAYRRDQHPNLKVVAITG 114 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKTT KEML L+ I T G+ NN +GVP+ L + + + ELG +H+GEI Sbjct: 115 SSGKTTAKEMLGSILNRIAPTLITRGNLNNDLGVPMMLLELTDAHRYAVMELGANHVGEI 174 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + T LV+P +A + I AHL F G + IA K+EI++GL GT + + D +F+ L Sbjct: 175 AYTTQLVKPDVACVLNIGTAHLGEFGGRDNIAKTKSEIYQGLSDAGTAIVPFGDDYFDTL 234 Query: 236 KAKSHALGIKTIYSFGKSK------------------------------NADFQLRKWKQ 265 + + I +FG+ AD Sbjct: 235 LNNAQQF-TQNILTFGERDVSLADAGVDMQQAKEIGLTDEDTVLLMGDVFADDVEVGNTS 293 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ + +S V + G H N L L +D K L P +G Sbjct: 294 TFSLNFNFEIDEIESQNVSLNFAGEHNISNALAAAACAQALGLSIDDIAKGLDAAKPAKG 353 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R G TLID++YNANP+++ AA VL + VLGD+ E+G+ + Sbjct: 354 RLNFIE----FGKHTLIDDTYNANPSAVLAATQVL----VSQGAPTMLVLGDIGELGDAA 405 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALK--------DALPRSIHVHYSETMDGLFLFI 437 Q H L E ++ ++ ++ G A + L I Sbjct: 406 QEEHRKLGEAIAASGVTVLYTVGELTPVTVAQAQASGMQAQASGMQAQAYPDKATLLAAI 465 Query: 438 QSSLVDGD---VVVVKSSNSCGFYRLINLL 464 + L D ++ K S ++I+ L Sbjct: 466 KDKLTSSDDAWHILFKGSRYMMMEQVIDEL 495 >gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 427 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 111/439 (25%), Positives = 188/439 (42%), Gaps = 28/439 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G+ DSR I FF+++G +++G+ F A++ GA V++ + Sbjct: 14 SGVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKEN---YIQ 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD+ L L +LA R + K II ITGS GKTTTKE++ L + KTY G+ NNHI Sbjct: 71 VDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPL+L + + +F + E+G +H+GEI L+ + P+ IT AHL F E + Sbjct: 131 GVPLSLLEISENTEFAVIEMGANHIGEIELLSKIAEPNYGYITNFGKAHLEGFGSEEGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++E L ++ D K K + FGK + Sbjct: 191 KGKSELYEFLTESSGFIFYNSDDE----KQKHILSNYNKKFGFGK------EAGDLNYLV 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + ++ + G + N++ + I L V+ +S + R Sbjct: 241 KAENPNIVVEVNNKTFKSTLFGNYNIPNVISAISIGIFLGVPVEKVKNGISDYISSNNRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + N +I ++YNANP+SM AI + + +LGDM E+G Sbjct: 301 QILKINSNN----VILDAYNANPSSMLLAIKAFQNAELENK---VLILGDMFELGRDENK 353 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 FH ++ + + +I V+L G + S + SSL Sbjct: 354 FHQEIVDYCNNLDIERVFLVGEIFSKTNYSNKFISSHNYIELSNKKEFKEIKHSSL---- 409 Query: 446 VVVVKSSNSCGFYRLINLL 464 ++K S ++++ + Sbjct: 410 --LIKGSRGIELEKILDYI 426 >gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii TCDC-AB0715] gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] Length = 466 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 198/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ G + +V + Sbjct: 25 GYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L ++ Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFLQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2] Length = 466 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 125/459 (27%), Positives = 197/459 (42%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + LV+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + ++ S V G H QN + L ++ Sbjct: 255 AGGDVFATEIELLPQSVNFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185] gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185] Length = 432 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 111/436 (25%), Positives = 188/436 (43%), Gaps = 18/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A++ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEAQYAIEG--DRRYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L L +LA R + +I ITG+ GKTTTKE+++ LS G+ NNHIG Sbjct: 73 NDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQTHNILYTQGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHQGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K G + L+ + A G+ I Sbjct: 193 TKGELYDFLRKKGNSTIFIHHDNPYLM---NIAKGLNLISYGSGEDLYVNGCITGNSPYL 249 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + G+ + IG + N L + I + +AL+ + P+ R + Sbjct: 250 ALEWKAEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGVEDRKIDEALAGYTPQNNRSQ 309 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 A N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 310 LKETADN----TLIIDAYNANPTSMAAALQNFRNMTVS---HKMLILGDMRELGTESLNE 362 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + + VWL G ++ + + + ++++ G ++ Sbjct: 363 HQKIVDYIKESDFEKVWLVGEQFASVCHSFKT------YANVQEVIKELETNKPKGYTIL 416 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 417 IKGSNGIKLSSTVEYL 432 >gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] Length = 427 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 113/442 (25%), Positives = 186/442 (42%), Gaps = 34/442 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ + + +DSR I FFAI+ +G+ ++ A+ KGA LV+ + Sbjct: 16 PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIADR-----YSGNH 66 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V++ + + +LA R K +IAITGS GKTTTK+++ LS +T +G+ Sbjct: 67 EKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLGN 126 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNHIG+P T+ + +F + E+GMS GEI L + RP +IT I +HL Sbjct: 127 YNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKT 186 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E + AK E+ L + I ++ K A D + Sbjct: 187 RENVFKAKTELLPYLPEGCFISSGD-----DVFLKKIPA----------IHVGYDERNDY 231 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 ++ Q + G H N M + I ++ D T + L Sbjct: 232 RIFGYQKKDRRSSFQLNDKQYEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIEL 291 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R +R + I+++YNA+P SM A+ L + + + IAVLGDM E+G Sbjct: 292 SPMRFERSEYQGTK----YINDAYNASPISMGVALDSLVETTAECK---IAVLGDMLELG 344 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441 E +FH D+ E ++ + L G + V + E + + +++ Sbjct: 345 EKEVTFHKDVIEKAISCSLQAILLYGPRMKKALQEFSNIPNKVLHFEKKEEIKDYLKQFP 404 Query: 442 VDGDVVVVKSSNSCGFYRLINL 463 V++K+S +I Sbjct: 405 RK--TVLIKASRGMKLEEIIER 424 >gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Pedobacter sp. BAL39] gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Pedobacter sp. BAL39] Length = 433 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 112/435 (25%), Positives = 199/435 (45%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R+I+ FFA++G ++ ++F A+++GA +++ V Sbjct: 17 VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIIDDQQYH----TDERCILVP 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL LA + R+ + +I +TGS GKTTTKE++ LS +T+A G+ NNHIGV Sbjct: 73 DVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ + D++ + E+G +H EI L + P +IT + AHL F G E + Sbjct: 133 PLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGLITNVGMAHLDGFGGFEGVKKG 192 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KAE++ L++ +D+ + L A + L Y +S L E Sbjct: 193 KAELYAHLKQQQGKAFINNDNPYLLEMAHTAQLSDIVYYGSERSNTISGALNSTDPFLEL 252 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 SW + + + G + +N+L + I + + K LS + P+ R + Sbjct: 253 SWQKQGSEFSVGTQLT---GAYNFENILAAICIGDFFSLTPEQINKGLSGYAPQNNRSQL 309 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N T+I + YNANP+SM AA+ + + + + ++GDM E+G S H Sbjct: 310 TKTEHN----TVICDFYNANPSSMNAALKNMDSLHAANK---VVIIGDMFELGSESAEQH 362 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + + + + G + HY E+ +++Q V ++++ Sbjct: 363 LQIILQATNMTLDTLIFIGKNFHQ----AGMGHSGHYFESPADAAVYLQQQPVKDSLILL 418 Query: 450 KSSNSCGFYRLINLL 464 K S +L+ L Sbjct: 419 KGSRGMALEQLLPQL 433 >gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus influenzae 10810] Length = 457 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 208/473 (43%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L Q +Q IG V I+ D+R FFA+KG +D H ++ A Sbjct: 1 MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V V + S+SIP V D AL +LA R + +A+TGS GKT Sbjct: 59 V----AQGAVAVVVQQENSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114 Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T KEM + + G++NN IGVPLTL R+ F + ELG +H EI Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I+ D+ ++ + + S + +++ +G H +N Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + A + L +GR + N L+D++YNAN S+ AA Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL I + DM E+GE S + H ++ + ++L N+ V G + + Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 A+ +E +D L I++ L VV+ K S S +I L ++ Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454 >gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis L2TR] gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis L2TR] Length = 467 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 206/471 (43%), Gaps = 23/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + ++G IG ++ +S D+R+ F A+KG ++D HDF+ A Sbjct: 1 MISV-SLKWIAEQVEGRLIG--SDCTIDAVSTDTRADLTDALFIALKGKNFDAHDFVEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA ++ + + V++ AL +L A + + +A+TGS GKT Sbjct: 58 IAKGAAAIICEKKVDSE-----CRQIIVENSRHALGRLGAAIKAKVAPKTVAVTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML LS A G++NN IGVPLTL R+ + + + ELG +H GEI + T Sbjct: 113 TVKEMLAAILSIRHPVLATQGNFNNDIGVPLTLLRLQEEHKYAVVELGANHPGEISYTTD 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ ++ AH+ F + +A AK EIF G+ GT D F+ + Sbjct: 173 LVKPDVAILNNVSAAHVEGFGSLHGVARAKTEIFRGVGGQGTAITPRDSEFYPCWQRAC- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +FG S +AD SE E + N+L L Sbjct: 232 --SDMQWKTFGLSDSADVYASDVTLNSEG--HPSFTLHLGGETKQLELKLSGRHNVLNAL 287 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + + + R +ID++YNA+ AS KAA+ +L Sbjct: 288 SAAAAASELGISLNDIANGLQQVQPAQGRLTTIKVSDHLRIIDDTYNASVASTKAALDLL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +G RI VLGDM E+G ++++H D+ E I +++ G + + Sbjct: 348 ----GSYQGYRIFVLGDMGELGADARAYHEDIGEHAIGSGIDNLYSLGVLSQSASEVFNG 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLE 466 + ++ L + L + V+VK S S R++ + + Sbjct: 404 HG-GKHFGSLQSLVESVLQRLTEQTGKQPVTVLVKGSRSAHMERVVAAIQQ 453 >gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas endodontalis ATCC 35406] gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas endodontalis ATCC 35406] Length = 460 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 198/437 (45%), Gaps = 13/437 (2%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +G++ DSR+ F A+KG +DG+DF L A+ KG VV+ A + Sbjct: 35 SGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDR---AELAQKEARCLY 91 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D AL +LA R + II ITG+ GKTTTKE+++ L S A +G+ NN I Sbjct: 92 VEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNLNNQI 151 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL ++ +G+ E+G SH+G+I LT + P +IT I AHL F E + Sbjct: 152 GVPLTLLSFTPEMQYGVVEMGASHIGDIAELTAIAEPDFGLITNIGRAHLEGFGSFEGVT 211 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK E++ + G + + L + A ++T Y + L Sbjct: 212 KAKCELY---DWLGQHNGEAWVNADDPLLMQHSAPLVRTTYGTSREAFFRASLLDHPLGY 268 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ + +G + N L + + L + AL + P R Sbjct: 269 FLAFAFYWQRETYRVHT-QLVGKYNLPNALAAVAVGLRLGVAPPDIVMALEHYSPSNSRS 327 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + + ++YNANP+SM AI +S G + +LGDM E+G S+ Sbjct: 328 QYIANTPHHNNLVV--DAYNANPSSMYTAIENF--LSTSGAQAKYLILGDMFELGSASRE 383 Query: 388 FHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H+ L + L+ +L G AL+ ++ H+HY + + L ++ + ++ Sbjct: 384 EHLALVQRLARETTDITCYLVGKEFAALESEA-KAPHLHYFPSTEILAEQLRLAPIEHAF 442 Query: 447 VVVKSSNSCGFYRLINL 463 ++VK+S F L+ L Sbjct: 443 ILVKASRGMHFESLVEL 459 >gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] Length = 426 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 103/446 (23%), Positives = 179/446 (40%), Gaps = 24/446 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++S+ + + F A+KG +DGHDFI A++ GA V+ V S Sbjct: 3 DLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD----- 57 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +F V+ + AL KLA T++ +TGS GKTTTKE+L L + + + G+ Sbjct: 58 RIFLVESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N G+PL++ + I E+ S G+I L + P IAV+ + AHL F Sbjct: 118 NTEYGLPLSILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNAHLEFFGTR 177 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I K EI + ++ T +DDS + S + Sbjct: 178 ERIMETKMEIIKYSKENATAVTFFDDSDLRREVPRYRKTLFFGKESGDSVLKGWWYYEGS 237 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + N L I + L Sbjct: 238 TIA-----------EFEAFESLFTVKLSGYWNGGQLLNIAASLCVMRALGETVDIFDLAS 286 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + ++D++YNA+P + + +I L + G++ AV+G M E+GE Sbjct: 287 LKTVPGRFNVREKEGVLIVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGE 342 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S+ FH +L + L++ + +V+LS +K + S+ + + + + + + Sbjct: 343 RSKEFHEELGKRLNVLDGVYVFLSEPEAEWIK----SEKIILKSDDPEDIAKDLAARVTE 398 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 GDVV+ K+S + R++ + +E Sbjct: 399 GDVVLFKASRAVRIERVLEMFEKELE 424 >gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum StLB037] gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum StLB037] Length = 470 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 134/464 (28%), Positives = 210/464 (45%), Gaps = 22/464 (4%) Query: 6 TFHDLLQAIQGHSIG---IVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + L A+ G + P V G+ DSR I P + F A G DGH F+ AV Sbjct: 5 SLSHLADALGGRLVVRGDDTPDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFVGTAV 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAITGSV 117 ++GA L +V ++ + V D + AL+ LA R + I+ ITGS Sbjct: 65 ERGAALAIVERELDDP-----VSQIVVPDAVTALSDLARDVVARVREHGRLRIVGITGSN 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTK +L LS +T + S+NN +G PLT+ R+ D F + E G S G I Sbjct: 120 GKTTTKNLLARILSDEGETVSPRASFNNEVGAPLTMLRVTEDTRFLVSEFGASAPGAIAH 179 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L LV P + V+ + AH F GIE AK+E+ + G LN DD ++ Sbjct: 180 LAGLVTPDVGVVLMVGMAHAGGFGGIESTFRAKSELVHATREGGLAVLNVDDPRVAAMEP 239 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G + FG+ + A + + + + ++ + G+ + +G H N L Sbjct: 240 FARERGQDVRW-FGRGERAAVRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNAL 298 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + L A +A++ E + L +I+++YNA+P SM AA+ Sbjct: 299 AALATATALGVP---AAEAIARLETVEIAERWRMQPLGSDRVRIINDAYNASPDSMAAAL 355 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-D 416 L+QI+ GE +AVLG M E+GE + H + + I + + G + + Sbjct: 356 RTLAQITGPGER-TVAVLGAMSELGEYADEEHDRVGLLAVRLRIQRIVVIGPEARRMYLE 414 Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 A+ + + D + ++ + L DGD V+VKSSNS G Sbjct: 415 AIAQGSWDGEAVFFADADAAYDYLATELRDGDRVLVKSSNSAGL 458 >gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 469 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 162/471 (34%), Positives = 249/471 (52%), Gaps = 10/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT L A G G P V G+SID+R++AP + F A+ G + DGH + A Sbjct: 1 MTVLWTRAALQDATGGTFTGQAP-VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +++ V S + V D + ALN L AR R ++A+TGSVGKT Sbjct: 60 LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML +AL +I T+ SYNNH GVPLTLAR+P+D F + E+GM+H GEI L Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRP +A++TTIA AHL + +E IA K+++ I + DD+ + + A+ Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDL-IATLPPAGIAIVPDDATGQPIFAEQA 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A T++ G+ ++ + +E S V + G+S+ V + G H+ +N L Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+ L AD+ TA AL+ F P GRG + L+DESYNA+ S++++++VL Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALKPILGGRAA--LLDESYNASVLSVRSSLAVL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + R+AVLGD+ E+G +++ H L L + V+ SG + L D LP Sbjct: 357 GLLPATR---RMAVLGDIRELGAFARAEHESLL-SAVLAHADLVFCSGPDMKYLFDLLPP 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 S ++ L ++ ++ DV++VK S ++++L PA Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVSVLTA--PAT 461 >gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB900] Length = 466 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 198/459 (43%), Gaps = 25/459 (5%) Query: 16 GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ +PQ + I DSR +AF A+KG +D H+F+ G + +V + Sbjct: 25 GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPI 84 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133 A I V D AL +L R ++ + +IA+TGS GKTTTKEML LS + Sbjct: 85 DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 T G+ NN +GVP+ L + + + + ELG +H GEI + + +V+PH+A I I Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AHL F G + I AK+EI+ + G + D F ++ A I SFG Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D + + + + ++ S V G H QN + L ++ Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +K L +GR + + ID++YNANP SM +Q+ G ++ Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432 V+GD+ E+G+ S H DL L+ + H+ G A + S + +T Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426 Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 F+ + + + K S L+ L+E+ Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465 >gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 465 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 213/468 (45%), Gaps = 16/468 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + + P G SIDSR++A + FFA+KG +DGHDF+ A+ +G Sbjct: 3 LTLEQIARWCSAELRSSQPARPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRG 62 Query: 65 AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A VV+ A + L + VDD L AL +LA A R ++ +TGS GKTTT Sbjct: 63 AVGAVVSRARAAELLPLIDHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTT 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + L + + G+ NN+ G+PL L R+ + + + E+GM+H GEI L + Sbjct: 123 KEAIAAVLGAGYRVLKSQGNLNNNFGLPLQLLRLDTEDEIAVIEMGMNHAGEITALARIA 182 Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P V+T + AH+ NF GI +A AK E+ + L + + ++ Sbjct: 183 MPDWGVVTNVGKAHVENFTDGIAGVARAKYELVQALPAE----GIAFLNCDDAYVSQFGR 238 Query: 242 LGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + FG+ A ++ + +E + + V +G+ + H +G H N L L Sbjct: 239 DFHGRVILFGRGPCAHLRVEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAAL 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++ +AL ++ + +++++ YN+NP ++KA I+ L Sbjct: 299 AVGLAAEIPLEIGARALESLR----ADEKRGQIIPWRGASIVNDCYNSNPEALKAMIATL 354 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419 + R I V G+M E+G + + H E + + V G + A Sbjct: 355 MGMP---GNRHILVAGEMLELGAEAPALHAACGEAAAAAKVDIVVGVRGAASQIVDAARR 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Y ET + ++++++L +GD V++K+S R +++L E Sbjct: 412 AGADAVYVETPEDAGIWLKANLREGDAVLLKASRGVRLERALDVLQAE 459 >gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] Length = 479 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 113/474 (23%), Positives = 180/474 (37%), Gaps = 53/474 (11%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + D+R + P F A+ G DGHDF AV+ GA V+ + + P V Sbjct: 4 SVEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAARE-------VDAPAIVV 56 Query: 89 D----------------DV---------------LGALNKLAVAARLRSKATIIAITGSV 117 D +++LA T+I +TGS Sbjct: 57 PPLPPGQANSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAG-----GLTVIGVTGSS 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK+++ + + T A GS+N+ +G P T R F + E+ +G I Sbjct: 112 GKTSTKDVIAQLIEPMGPTVAPPGSFNSELGHPWTALRADASTKFLVLEMSARGVGHIAA 171 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 P I + + AH+ F E IA AK E+ E L + G LN DD + + Sbjct: 172 AAETTPPRIGAVLNVGSAHVGEFGSREGIAKAKGELVEALPEDGLAVLNLDDPLVAAMAS 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ A + S G A + + V G H N L Sbjct: 232 RTKARIVGVGESAGAQIRAADITVDAEARP---SFRLITPEGEAPVTLPLHGEHHVGNAL 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 I L A + A + + +R T++++SYNANP S++A + Sbjct: 289 SAAAIARELGATTEEI--AQRLSSLQRRSERRMEVTTRADGVTILNDSYNANPESVRAGL 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + R AVLG M E+GE S + H + ++ NI + + G A+ Sbjct: 347 KALASM-SRSGRRAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQEAAAMHQG 405 Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ + L GDVV+VK+S + G +R+ LL + Sbjct: 406 AFQEGSWGEESVLVPDVEAAVAVLHDQLRPGDVVLVKASKAAGLWRVAEALLAD 459 >gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 432 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 118/435 (27%), Positives = 191/435 (43%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G V++ A G VD Sbjct: 16 VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEG--DQRYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIGV Sbjct: 74 DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + D + E+G +H GEI+FL+ + P +IT + AHL F E + Sbjct: 134 PSTLLRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L K + L+ + A G+ I + Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLM---NIAEGLNLIPYGTEDDLYVNGRITGNSPYLT 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + GKS +V IG + N L + I + +ALS + P+ R + Sbjct: 251 FEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALSGYTPQNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N TLI ++YNANP SM AA+ + ++ +LGDM E+G S + H Sbjct: 311 KKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVP---HKMLILGDMRELGAESAAEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L VWL G A + + + + +++ G +++ Sbjct: 364 QKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPKGYTILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SN +++ L Sbjct: 418 KGSNGIKLCSVVDYL 432 >gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella timonensis CRIS 5C-B1] gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella timonensis CRIS 5C-B1] Length = 446 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 120/446 (26%), Positives = 197/446 (44%), Gaps = 26/446 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G++F A++KG V++ V+ Sbjct: 16 VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQK--EYQIQQDERYILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + II ITG+ GKTTTKE+L L+ + G++NN IGV Sbjct: 74 DCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L +V P A+IT + AHL F E + Sbjct: 134 PKTLLRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNVGRAHLQGFGSFEGVKRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KAE+++ +E + + L+ A + K CS Sbjct: 194 KAELYDYMEVNKPNGKVFINQDNPHLQEMFQAHCPHVHRISYSQTQQTGVSYQGKICSNN 253 Query: 270 SWMEVQLQG-----------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ Q + + EV H +G + N+L + I L AL+ Sbjct: 254 PFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAISIGHYLGVQPHEINHALT 313 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + N LI ++YNANP SM+AA+ +Q+ + +A+LGDM Sbjct: 314 HYTPSNNRSQLEVTKHNN----LIVDAYNANPTSMEAALVNFAQMQVAPK---MAILGDM 366 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+GE+S + H + +L+ I +WL G + + ++ + I+ Sbjct: 367 RELGEVSVAEHQKIINLLNTLPIQQIWLVGEEFGKTTTTFQK------YKNIEEVKETIR 420 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 G +++K SN ++L LL Sbjct: 421 QQQPQGFYILIKGSNGIKLFQLPELL 446 >gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563] Length = 427 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 113/442 (25%), Positives = 185/442 (41%), Gaps = 34/442 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ + + +DSR I FFAI+ +G+ ++ A+ KGA LV+ + Sbjct: 16 PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIADR-----YSGNH 66 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V++ + + +LA R K +IAITGS GKTTTK+++ LS +T +G+ Sbjct: 67 EKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLGN 126 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 YNNHIG+P T+ + +F + E+GMS GEI L + RP +IT I +HL Sbjct: 127 YNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKT 186 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 E + AK E+ L + I ++ K A D + Sbjct: 187 RENVFKAKTELLPYLPEGCFITSGD-----DVFLKKIPA----------IHVGYDERNDY 231 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 ++ Q + G H N M + I + D T + L Sbjct: 232 RIFGYKKKDRRSSFQLNDKQYEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIEL 291 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R +R + I+++YNA+P SM A+ L + + + IAVLGDM E+G Sbjct: 292 SPMRFERSEYQGTK----YINDAYNASPISMGVALDSLVETTAECK---IAVLGDMLELG 344 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441 E +FH D+ E ++ + L G + V + E + + +++ Sbjct: 345 EKEVTFHKDVIEKAISCSLQAILLYGPRMKKALQEFSNIPNKVLHFEKKEEIKDYLKQFP 404 Query: 442 VDGDVVVVKSSNSCGFYRLINL 463 V++K+S +I Sbjct: 405 RK--TVLIKASRGMKLEEIIER 424 >gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus obscurus DSM 43160] gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus obscurus DSM 43160] Length = 464 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 125/466 (26%), Positives = 191/466 (40%), Gaps = 23/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + ++ +A+ G +++DSR++AP + F A+ G DGHDF+ A Sbjct: 1 MIEM-SLAEVAEAVGGRLTPDAAGTVPGKVTVDSRAVAPGDLFVAVPGERVDGHDFLTAA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSV 117 GA + ++P VD+ + AL +LA A R I ITGS Sbjct: 60 AAAGAVAALTTRP------DGALPCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSS 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L L++ T + GSYNN IG+PLT+ D F + E+G G I Sbjct: 114 GKTSTKDLLGQVLATAGATVSPPGSYNNDIGLPLTVLDADEDTRFLVLEMGSRGRGHIAR 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + RP + V+ + AHL F + IA AK E+ E L GT LN DD + Sbjct: 174 LCRVARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEALPAEGTAVLNADDPRVIGMAP 233 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ A + T S G A+ + + + + V A + Sbjct: 234 RTRARVVTTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANALSAA 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V A+ A R T+++++YNANP SM+AA+ Sbjct: 294 GAALAAGMAPDAVAAALSAAEPRS-----RWRMEVTRRDDGVTVVNDAYNANPESMRAAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD- 416 + L + RR+AVLG M E+G + H L + V G + + D Sbjct: 349 AAL---AGLPARRRVAVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGIADG 405 Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + LV GDVV+VK+S S G Sbjct: 406 ALAAGAREGEGAVRVPDRAAARELLTEVLVPGDVVLVKASRSYGLE 451 >gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia PC184] gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia PC184] Length = 468 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 109/474 (22%), Positives = 195/474 (41%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ + +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + AL LA R+R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAHAPADVAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + E+GM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDAERQNDAQIVGRMHGGELAIDTPAGAVTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 + + L F P +GR + + + T++D++YNANP SM+AA Sbjct: 293 AATAAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGDTAR--HFDDVGALVSALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium urealyticum DSM 7109] gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium urealyticum DSM 7109] Length = 500 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 130/501 (25%), Positives = 200/501 (39%), Gaps = 32/501 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ G I G + V G + DSR +AP F A+ G DGHD++ Sbjct: 1 MIEL-SAGEIAAITGGELIDGAAAETIVAGPVEFDSRKVAPGSIFMALPGATVDGHDYVA 59 Query: 59 HAVQKGAGLVVVNTD--MVASIGSLSIPVFGVDD--------------VLGALNKLAVA- 101 A ++GA L +V A + S G D+ VL A++KLA Sbjct: 60 AAGEQGAALAIVGRPVGYPALLAPASERAEGTDNSAVFGADEEGYGAAVLAAVDKLARHN 119 Query: 102 ---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 ++ +TGS GKT+TK+++ L + +T A GS+NN IG+P T R Sbjct: 120 TDVLADEEGMVVVGVTGSAGKTSTKDLIGALLGDLGETVAPPGSFNNEIGLPYTALRASR 179 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 F + E+ +G I LT + P I V + AHL F E IA AK E+ E L Sbjct: 180 GTKFLVSEMSARGVGHIAHLTTVTPPKIGVELNVGSAHLGEFGSREAIAQAKGELVEALP 239 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-----IYSFGKSKNADFQLRKWKQCSEQSWME 273 + ++ + + A H + + AD+ + Sbjct: 240 AAEDGGIAILNADDDAVIAMRHRTRARVVTFALDERSKTGERADYWASDIRLDEVARASF 299 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 V + Q + + + A A + + R Sbjct: 300 RLHHPYGEPVDIRLGVFGAHQVSNALAAAAVAVESGMLPASVARVLGNHVAASANRMDVR 359 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + T+I++SYNANP SM+A I L+ + E AVLG M E+GE S H +L Sbjct: 360 TRRDGATIINDSYNANPESMRAGIDALAYTAGGRPEASSWAVLGQMGELGEESAEEHTEL 419 Query: 393 AEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L I H + G + A+ DA + E +D F+ + DVV+V Sbjct: 420 GKFLGTRGIDHAVIVGTGVNQRAIADAAREHGVDTRSVEDVDAAVNFVDQHVKPKDVVLV 479 Query: 450 KSSNSCGFYRLINLLLEEFPA 470 K+S S G + + LL + A Sbjct: 480 KASYSDGLWAVAEGLLADEGA 500 >gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteria bacterium BAL38] gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteria bacterium BAL38] Length = 428 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 124/437 (28%), Positives = 197/437 (45%), Gaps = 23/437 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +S D+R I F A+KG ++D + F A++KGA VV++ S + Sbjct: 15 SSVSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVID----NSKFYIDERTLL 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L AL +LA R TII +TGS GKTTTKE++ L T A IG+ NNHI Sbjct: 71 VEDSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R D + GI E+G +H EI FL + +P IT AHL F G+E + Sbjct: 131 GVPLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGYITNFGKAHLEGFGGVEGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ ++ D + T YSF + Sbjct: 191 KGKSELYNYIKNNNKTVFINADDPLQK-----EKSNNLTTYSFST----NETEADVTISK 241 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + VQ+ + H IG + A N+ + I +A+ + P+ R Sbjct: 242 VVANPMVQISFNDETINSHLIGIYNANNINAAITIGHYFKISDKLIKEAIENYIPENNRS 301 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + N+ +I ++YNANP+SM+AAI+ Q+ + + IA+LGDM E+GE S Sbjct: 302 QLIEKNGNK----IILDAYNANPSSMQAAITNFIQLEDNSK---IAILGDMFELGEESLL 354 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E L N + G ++ + E + L F++++ ++ Sbjct: 355 EHKKIIEFLVNENKITTYFIGKD---FYANKVNHSNLKFFENFEILSDFLKNNPPTNSLL 411 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S + + ++ Sbjct: 412 LIKGSRGMALEKTLQII 428 >gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 468 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 137/466 (29%), Positives = 204/466 (43%), Gaps = 6/466 (1%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P +T +L A +G +G P V G+S D+R+++P + F A+KG +D HD + A Sbjct: 7 TPQFTPDELAGATRGRWLGAPPSA-VAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 GA +VV+ A+ + V D L AL +A R R +I +TGS GKTT Sbjct: 66 AAGAAALVVSEAWAAAHPAPPRAALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T+EM+ L++ G+ NN +GVPLTL + + E+GM+H GEI L + Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P + V+T APAHL ++ +A AKAE++EGL G +N DD + + A Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADD---ARMLKRGVA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + + + L + EV H G A N Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 A T + G+R R L+D+ YNANPASM AA+ VL Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSAALDVLR 362 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419 ++ R AVLGDM E+G H L + ++ + G A Sbjct: 363 DLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAAGAA 422 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++E +D L F++ L DV++VK S RL+ L Sbjct: 423 GLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468 >gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromicrobium marinum DSM 15272] gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromicrobium marinum DSM 15272] Length = 458 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 191/470 (40%), Gaps = 23/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + A G + G + V G +IDSR + P F AI G H DGH + Sbjct: 1 MIEL-DLEGIAAATGGTAHG---RARVTGPATIDSRDVPPGGLFVAIPGEHVDGHAYAEA 56 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 AV+ GA V+ + A P V D AL LA A R + + +TGS G Sbjct: 57 AVRAGAAAVLCTRPVAA-------PHVLVPDATVALGLLARATHDRLDRLSTVGLTGSSG 109 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++L L + T A GS+NN +GVPLT+ R + + E+G G I L Sbjct: 110 KTSTKDLLAHVLEPLAPTVAPTGSFNNELGVPLTVLRADPSTRYLVVEMGARGRGHIAAL 169 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +AV+ + AH F +++ A AK E+ E L GT LN DD + + Sbjct: 170 CRISPPDVAVVLNVGTAHQGEFGSVDDTAVAKGELVEALGPGGTAVLNADDPRVAAMAGR 229 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG+ D +L + G E + Sbjct: 230 TAGQVL----TFGR--GGDVRLVDLLTDAAGHPRITLAHGPDRETFVLPQIGGHHGSNAA 283 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 V++ + A + R ++D+SYNANP S+ AA+ Sbjct: 284 ATAAVAVALGVDLATVAARLATATVRSPHRMARHV-RPDGLVVVDDSYNANPESVAAALR 342 Query: 359 VLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 ++ + +P GR + VLG+M E+G S H + + I V G + + Sbjct: 343 SVADLGAPGDGGRTVVVLGEMLELGADSADHHRRIGALARELGIGLVVAVGPGASPVVEG 402 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + GD+V+VK+S S R++ LL + Sbjct: 403 AGALATG--VPDVAAAVELLHEQVGPGDLVLVKASRSARLERVVTALLAD 450 >gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella amnii CRIS 21A-A] gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella amnii CRIS 21A-A] Length = 441 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 114/443 (25%), Positives = 191/443 (43%), Gaps = 25/443 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A++ G +V+ A + + V Sbjct: 16 VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAEPDNE--RIILVS 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A +LA R +I ITG+ GKTT+KE+++ L+ K + +G+YNN +GV Sbjct: 74 DALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL M + + E+G SH +I+ L V P +IT + AHL F E + Sbjct: 134 PRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLITNVGRAHLEGFGSFEGVKKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ + + L + I ++G+ AD + C Sbjct: 194 KGELYDYLKAHNALLF--LNESNPDLVEMATERNFDRIITYGQDDTADVKGEVISCCPFL 251 Query: 270 SWMEV--------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + Q+ EV + IG + NML + I + AL + Sbjct: 252 KFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLHFGVEPHKICHALESYT 311 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R + + N LI ++YNANP+SMKAAI + + +A+LGDM E+ Sbjct: 312 PTNNRSQLIKTKDNN----LIVDAYNANPSSMKAAIENFRLMEVKNK---MAILGDMHEL 364 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ + H + + + I +VWL G + + H ++ + I Sbjct: 365 GDATAEEHQRIVDQIDASKIENVWLVGENFAKT------NCHFRKFANVEEVKAAIALKK 418 Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464 +++K SN+ + L LL Sbjct: 419 PTEHYILIKGSNTTKLFELPKLL 441 >gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 518 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 136/503 (27%), Positives = 212/503 (42%), Gaps = 39/503 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PL + + G P V+G + DSR I P F A+ G H DGH+F Sbjct: 1 MIPL-ELAAIARITGGRLSDDADPHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFAR 59 Query: 59 HAVQKGAGLVVVNTDM--------VASIGSLSIPVFGVDD-------VLGALNKLAVAAR 103 A+ +GA V+ D+ A+ +D V+ ++KLA Sbjct: 60 DAIAQGAAGVLAAKDVGVAAVIMPKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVA 119 Query: 104 L----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 +I+ ITGS GKT+TK+++ LS+ +T A GS+NN +G P T+ R Sbjct: 120 STLTAEHGLSIVGITGSAGKTSTKDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCTES 179 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F + E+ +G I L + P V+ I AHL F E IA+AK E+ E L Sbjct: 180 TKFLVAEMSARGIGHIAHLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALPS 239 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + ++ L+ + + + G+ AD+ Sbjct: 240 AAEGGVAILNADDPLVAGMAPRTRARVVTFSGQHGAADYYATDISLDDVTRASFTLHSPH 299 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + Q + + +D A A S+ G R Sbjct: 300 NEPQRVELNVFGAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADGV 359 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+I+++YNANP SM+A I+ L + G R IAVLG+M E+G S S H +L L+ Sbjct: 360 TVINDAYNANPDSMRAGIAALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELAR 419 Query: 399 YNISHVWLSGFH--VLALKD-ALPRSIHVHYSETMDGLFLFIQSSL------VDG----- 444 Y ++H+ G + + ALKD A R I+V + ++ +Q+ L +G Sbjct: 420 YRVTHLVAVGDNDAMDALKDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYERD 479 Query: 445 --DVVVVKSSNSCGFYRLINLLL 465 DVV+VK+SN+ G + + N LL Sbjct: 480 ARDVVLVKASNALGLWAVANALL 502 >gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] Length = 821 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 116/463 (25%), Positives = 196/463 (42%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ I IG Q ++ I DSRS+ + FFA+K DGH +I + Sbjct: 4 SIEEITSVIGAERIGK-HQATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYAR 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV V + L AL +LA R + + ++ ITGS GKT K Sbjct: 63 GVRNFVVTDVPEQLSHYADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSNGKTVVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E + LS K SYN+ IGVPL++ M + GIFE G+S +GE+ L +++ Sbjct: 123 EWIYQLLSPEKVITRSPRSYNSQIGVPLSVWMMNEHTELGIFEAGISEMGEMEALQPIIQ 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T I AH NFS ++ K ++F + I N D+ +KS Sbjct: 183 PTIGVLTNIGWAHQENFSSLQGKCMEKLQLF---KDCDVIIYNGDNELISSCVSKSLFTS 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +S K + K ++ + ++ + G E I +N L L + Sbjct: 240 REIAWSM-KDNERPLFIEKIEKDDTGTTVKYRYLGFLKEYRIPFIDDASIENSLNALAVA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + ++ P R + LI++SYN++ AS+ A+ +++ Sbjct: 299 LYLMVSPEDIAERMAHLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + RR +L D+ E G+ S+ + +A+++ + + G + A Sbjct: 356 TEDKGRRRTLILSDILESGQPSKLLYRQVADLVHSRKVDRIIGVGEEISAAASRFEIDKR 415 Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + T L I SSL +VV++K + F + +LL Sbjct: 416 --FFRTTAELIESGILSSLR-NEVVLIKGARVFHFDDITDLLE 455 >gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] Length = 447 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 129/466 (27%), Positives = 192/466 (41%), Gaps = 22/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + ++ + G G +D R P F A G H DGHD+ A Sbjct: 1 MIPL-SLGEIAAVVGGTVAGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 + GA + + +P V+D AL LA RLR T++ +TGS G Sbjct: 60 GRAGAVATLGSRPTP-------LPTVVVEDAQSALQALAAHVVARLRDGLTVVGLTGSQG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++L LSS T A IGS NN +GVPLT+ R F E+G H+G+I L Sbjct: 113 KTSTKDLLAAVLSSAAPTIATIGSLNNELGVPLTMLRADPATRFLALEMGARHIGDIAEL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV P IAV+ + AHL F E IA K E+ +GL GT L DD +++ Sbjct: 173 TGLVAPDIAVVLNVGQAHLGEFGSREAIARTKGELVQGLAPGGTAVLGADDPRVVAMRSL 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG+ ++AD ++ + V + Sbjct: 233 TDGPVL----TFGRVEHADVRVLDLALDRLGRPSFTLRTADASAPVTLPLVGGHQALNAS 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A R TL+++SYNANP S +AA+ Sbjct: 289 AAAAAGLAAGVPLDVAAAALATASLSQWRMELRDLA--CGATLLNDSYNANPDSTRAALD 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ GRRIAVLG+M E+G+ S++ H + E + V G + D Sbjct: 347 A---LAAIEGGRRIAVLGEMRELGDGSEAEHRAVGEYAASR-ADVVVAVGEAARPIADGA 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V + +++ L G+VV+VK+S + L Sbjct: 403 --GERVVALADNNAAVDWLRGHLAAGEVVLVKASRGARLDEVAVAL 446 >gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] Length = 426 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 103/446 (23%), Positives = 182/446 (40%), Gaps = 24/446 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++S+ + + F A+KG +DGHDFI A++ GA ++ V S Sbjct: 3 DLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSD----- 57 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +F V+ + L KLA T++ +TGS GKTTTKE+L L + + + G+ Sbjct: 58 RIFLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N G+PL++ + + E+ S G+I L + P +AV+ + AHL F Sbjct: 118 NTEYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTR 177 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I K EI + ++ +DD + F + D L+ W Sbjct: 178 ERIMETKMEIIKHSKENAIAVTLFDDPDLRKEVPR------YRNTLFFGKEGGDSVLKDW 231 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + E + V G L I + L Sbjct: 232 WYYEGSTIAEFEAFDSLFTVKLSGYWNG-----GQLLNIAASLCVMRTLGETVDIFDLAS 286 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + ++D++YNA+P + + +I L + G++ AV+G M E+GE Sbjct: 287 LKTVPGRFNVREKKGVLIVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGE 342 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S+ FH +L E L++ + +V+LS +K + S+ + + + + + Sbjct: 343 RSKEFHEELGERLNVLDGVYVFLSEPEAEWIK----SKKIILKSDDPEKIAKDLATRVKK 398 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 GDVV+ K+S + R++ + +E Sbjct: 399 GDVVLFKASRAVRIERVLEMFEKELE 424 >gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC BAA-286] Length = 428 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 120/435 (27%), Positives = 200/435 (45%), Gaps = 22/435 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+ FFA+KG +++G+++ A+ G +V+ A+ + + V+ Sbjct: 16 VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVDESKYATRPN----IILVE 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L KLA R + K +I ITG+ GKTTTKE++T LS A G+ NNHIGV Sbjct: 72 DCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELITSVLSQEYNVLATQGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + I E+G SH+GEI+ L+ + P+ VIT I AH+ F E + A Sbjct: 132 PLTLLRIKKEHEIAIIEMGASHVGEIKVLSEMAMPNYGVITNIGHAHIEGFGSYENVIKA 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E++E + T + L + Y + ++ + E Sbjct: 192 KGELYEYIRSTRD--GKIFIDYDNSLLREMSEGITSIYYGLEEDLFISGKVLSIRPFLE- 248 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + + +V + IG + N L + I L KA+ + P R + Sbjct: 249 --FEWKFGTRRNKVKTNLIGEYNLSNALAAITIGKYLGVKASLICKAIEEYQPTNNRSQL 306 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N LI ++YNANP SM AA+ + + ++ +LGDM E+G + H Sbjct: 307 KETDRNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDTDLEH 359 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ +S +N V G + + PR + +D L +++ + + +++ Sbjct: 360 QKVADYVSHHNFDRVIFVGDNFSRIITDYPR------FKDLDSLKYYLKENPIADSYILL 413 Query: 450 KSSNSCGFYRLINLL 464 K S R I++L Sbjct: 414 KGSRGVQLERCIDVL 428 >gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila str. Corby] gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila str. Corby] Length = 406 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 127/420 (30%), Positives = 189/420 (45%), Gaps = 19/420 (4%) Query: 48 GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107 G +DGHDFI A KGA VVN I + IP F V L AL K+A A R Sbjct: 2 GERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQFVVVSPLMALAKIAAAHRQEMS 57 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 IIA+TGS GKTT KEM+ L ++A G+ NNHIGVPL++ + + +FEL Sbjct: 58 CPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNLNNHIGVPLSMLALNKQHRYAVFEL 115 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G +H GEI +V+P +++I IAPAH+ F I+ +A +K EI +GL TG +N Sbjct: 116 GANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPTGVAIVND 175 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286 DD++ I F AD + + + + +E+ Sbjct: 176 DDAYAHFWDDLIADKKILR---FSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQ 232 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H +N L + + + L+ F +GR Q T+ID++Y Sbjct: 233 VPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGRMTM---LSGQNQSTVIDDTY 289 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NAN S+ A+ VL GR+I V GDM E+GE + H ++ I + Sbjct: 290 NANLRSVLTALEVL----SGRPGRKIFVFGDMGELGEWTTQHHREVGIAARQLGIDKLMS 345 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G H A + + + L +++ L V+VK S S +++ L++ Sbjct: 346 CGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLTPDTTVLVKGSRSSAMENVVHRLVQ 403 >gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] Length = 502 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 138/515 (26%), Positives = 239/515 (46%), Gaps = 69/515 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L +A+ N + +S+ + + F A+KG + DGHD++L A Sbjct: 1 MI--WNSETLSKALGITI---SNSINCNEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA-------- 112 + KGA ++V+ + + + VDD AL K+A+ R SKA IA Sbjct: 55 IDKGANAIIVSKHIDIVDKN---KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKT 111 Query: 113 -------------------------------------------ITGSVGKTTTKEMLTIA 129 + + T ++ Sbjct: 112 STKGALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEV 171 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +A G++NNH+G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+I Sbjct: 172 SYIKGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMI 231 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ AHL F+ +E+IA AK EIFE K +N + + + + + L I IY+ Sbjct: 232 TNVSEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYN 291 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG S N +L + +Q ++ ++ K++E+ I H A+N + L I++IL + Sbjct: 292 FGASYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKN 351 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D A L+ P +GRG+ +N +I + YNA+P SMKAA+ L Q+ + Sbjct: 352 LDIAANHLANISPTKGRGEM----INIQNCCVICDYYNASPQSMKAALEYLKQVPAENK- 406 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 A++GDM E+G+ S++ H +L + + S V+L G + + + LP I Y + Sbjct: 407 --TAIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIYNLLPFKIAKKYFKN 464 Query: 430 MDGLFLFI--QSSLVDGDVVVVKSSNSCGFYRLIN 462 +D L I + +++++K S ++++ Sbjct: 465 VDELITHITVTDLFKNNELILIKGSRGIKLDKIVD 499 >gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia J2315] gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia J2315] Length = 468 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 109/474 (22%), Positives = 194/474 (40%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ + +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + AL LA R+R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAHAPAGVAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + E+GM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDAERQNDAQIVGRMHGDELAIDTPAGAVTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + L F P +GR + + T++D++YNANP SM+AA Sbjct: 293 AATAAALGAGVALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGDTAR--HFDDVGALVSALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia MC0-3] gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia MC0-3] Length = 468 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 109/474 (22%), Positives = 195/474 (41%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ + +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + AL LA R+R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + E+GM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 + + L F P +GR + + + T++D++YNANP SM+AA Sbjct: 293 AATAAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFAFGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGDTAR--HFDDVGALVSALFAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans lithotrophicus ES-1] gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans lithotrophicus ES-1] Length = 480 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 137/482 (28%), Positives = 211/482 (43%), Gaps = 38/482 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G + +S D+R+I + F A+KG ++DG F+ A Sbjct: 1 MMMLSQAVNALHARMDG--ADVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAAMA 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VVN D +P+ V+D AL +LA R + ++AITGS GKTT K Sbjct: 59 GAVAAVVNRDAGLRTQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVK 118 Query: 124 EMLTIALSSIKKTYAC-----------------------IGSYNNHIGVPLTLARMPVDV 160 EML+ L K + G++NN IG+PLTL R+ + Sbjct: 119 EMLSAILRQKIKDDSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANH 178 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + E+GM+H EI +LT + P +A++ AHL +E +A AK EIF GL+ Sbjct: 179 RYAVIEMGMNHPNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAGLKDD 238 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 GT +N DD+ L ++ G + F A+ Q + Q + V+ Sbjct: 239 GTAVINADDAHAALWRS---LAGKHRVLDFSLEHPANIQGKWVVQGYGG-ELLVRTPAGE 294 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 M +V G H A+N L L T + L F GR +R + T Sbjct: 295 MRIVLQVPGEHNARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQRKQAKNG---AT 351 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID++YNANPASM AA+ VL+ +G+RI VLGDM E+GE + FH ++ Sbjct: 352 LIDDTYNANPASMHAALEVLA----QAKGKRIFVLGDMGELGEDAAQFHREIGISARELG 407 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 I ++ G + +++ L + + L ++K S R+ Sbjct: 408 IERLFALGTLSAEAVREFGAG--ALHFASVEELNAALDAELDAQTTALIKGSRFMKMERV 465 Query: 461 IN 462 + Sbjct: 466 VQ 467 >gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] gi|46914748|emb|CAG21525.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] Length = 468 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 124/482 (25%), Positives = 192/482 (39%), Gaps = 31/482 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L + IG V +S D+R+++ F A+KG +D HDF +A Sbjct: 1 MIEVQ-LAQLADVLDAELIG--SDITVANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGS 116 + G ++V+ + + +P V D AL L + +A+TGS Sbjct: 58 MDNGVAALLVSRHL-----PVELPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT KEM+ LS A G++NN IGVPLTL R+ + +F + ELG +H EI Sbjct: 113 CGKTTVKEMVAEILSQKGNVLATAGNFNNDIGVPLTLLRLTPEHEFAVIELGANHQQEIA 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T+LV+P +A+I +A AHL F + +A AK EIFEGL Sbjct: 173 YTTNLVKPQVALINNLAAAHLEGFGSLAGVAQAKGEIFEGLTAPLNGSGLSTAIINLDSN 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + L ++ D + Sbjct: 233 DVAMWLPFLAQHAVKTFSLTDISADFSATDIFINSEGRACFTMCTPEGSTDITLTLAGTH 292 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+ L ++ A T + + R + + LID++YNA+ AS+K Sbjct: 293 NVSNALAAAALAMAVGATLEQVKAGLEQVVNVKGRVDVSHPREGLRLIDDTYNASVASVK 352 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI +L+ + G+R VLGDM E+GE S S H ++AE + V+ G + Sbjct: 353 AAIDLLASFT----GQRWFVLGDMAELGEDSASLHREVAEYAMTKGLDKVFTFGCASAVV 408 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVVKSSNSCGFYRLINLLL 465 D + L +Q+ L V+ K + S +I L Sbjct: 409 SDL----NQGQHFADKSTLIEQLQAQLHPRNINQQHYQEVTVLAKGARSSRMEDVIAALQ 464 Query: 466 EE 467 E+ Sbjct: 465 ED 466 >gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_23] gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_23] Length = 431 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 114/436 (26%), Positives = 187/436 (42%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEG--DQRYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIG Sbjct: 73 DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K I + D+ L S L + + + Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G++ +V IG + N L + I + KAL+ + P+ R + Sbjct: 249 AFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 309 LKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGADSPAE 361 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + N VWL G A + + + + +Q G ++ Sbjct: 362 HQKIVDYIKESNFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKPKGYTIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 416 IKGSNGIKLSSTVEFL 431 >gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR51-B] gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR51-B] Length = 456 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 121/471 (25%), Positives = 199/471 (42%), Gaps = 19/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + +G V+G++IDSR+++ + F A++G DGHD++ Sbjct: 1 MIEALDLNAIATRLGAEVLGATDALRVSGVAIDSRTVSAGDLFVALRGERVDGHDYVAA- 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V ++ IP V + L+ +A R + + ++ ITGS GKT Sbjct: 60 ----AHAGGAVAAVVEEPVAVEIPQLQVAASVDVLSLIAGMVREQYRGVLVGITGSAGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + K +L L+ T A G+ NN IGVPLTL R+ ++F + E+G G+I L Sbjct: 116 SAKTLLASVLAEAGPTLATSGNQNNEIGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCA 175 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + RP I + APAHL+N+ ++ IA K EI L N D + ++ + Sbjct: 176 VARPGITALLNAAPAHLANYDSVDAIARTKGEILAALGSGDLGVFNGDQRYADVWRE--- 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG SK D + + + + V+ +V G N L Sbjct: 233 MAAPAEVRTFGMSKGVDVRAINIQYEGYKGTHFRVKTPEDGFDVALKLPGSPGVYNALAA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + I L + L P+ GRG+ R + ++D+SYNANP ++ AAI Sbjct: 293 IAIAGALGLSPAAIARGLEKVSPERGRGRALRASSGAQ---IVDDSYNANPVAVAAAIDT 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ GRR +LG M E+G + FH ++ + + G + Sbjct: 350 LAMTP----GRRSLILGPMLELGPKTDEFHREMGVRAKEAGLDRLITVGEATRPAAEGFG 405 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 S + L + GD V+VK S +++ LL E A Sbjct: 406 GSPQ--HFADNSALLSALPDF-TSGDTVLVKGSRGARLEVVVDALLGELEA 453 >gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Granulibacter bethesdensis CGDNIH1] gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Granulibacter bethesdensis CGDNIH1] Length = 459 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 164/464 (35%), Positives = 238/464 (51%), Gaps = 17/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT LL A G +G+SID+R++ P + F A++G + DGHD A Sbjct: 1 MSALWTREALLAATGGRF---SMPFDAHGVSIDTRTLEPADLFVALQGDNGDGHDHAEAA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+ + D P V+D + AL L AR R T+ A+TGSVGKT Sbjct: 58 LARGAAGVLAHRDGPG-------PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML AL+ +A SYNNH GVPLTLAR+P + E+GM+H GEI L Sbjct: 111 TTKEMLRTALAPFGPVHAAYASYNNHWGVPLTLARLPESARSCVVEIGMNHAGEIAPLAA 170 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+ +H+ + IE IA KA +F GL G + D L A+ Sbjct: 171 LARPHVAIITTVERSHIGHLGSIEAIADEKAALFSGLAADGVAIMPADSPMLPRLMAQ-- 228 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +FG N+ +L++ + ++ S +++ ++G+S+ G HMA N L L Sbjct: 229 -AAPHRVMTFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAAL 287 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V D A AL FH GRG + ALN G L+DESYNA+ AS++AA+ VL Sbjct: 288 SAVDAAGFDPHPAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 RI VLGD+ E+G+ + + H LA+ ++ + G + L DALP Sbjct: 348 RLTPASR---RIVVLGDILELGDQAVAEHAGLAQDIAACA-DLAFTCGPMMRHLFDALPA 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S+ + L + +++ DGD ++VK S + L Sbjct: 404 SVRGAHEADSASLAPVVSAAIRDGDTILVKGSFGSRMCIVTAAL 447 >gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] Length = 462 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 195/471 (41%), Gaps = 29/471 (6%) Query: 1 MN-PLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MN L T + + + I P + +S DSRS+ P FFAI+G DGH+F+ Sbjct: 1 MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQ 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A GA VV +S+P V D AL A R + +IA+ GS G Sbjct: 60 AASDAGAAAAVVTH-----FVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114 Query: 119 KTTTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTTT +M+ + + G+ NN +GV L L ++ + FE+GM+H+GE+ Sbjct: 115 KTTTTQMVLSIIKERFQEGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEM 174 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 R L + P I +T H + +EE A E+F L + G +N D F Sbjct: 175 RPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEW 234 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + G + +FG + + E + + +++ G H N Sbjct: 235 RK---MAGNNRVVTFGTPDSDVYAC-----EVEGTAFRLVTPIGQIDIELKVPGKHNIVN 286 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + ++ + D+ K L F R +ID+SYNANP SM Sbjct: 287 AVNAAAVLFAMGRDLCDIKKGLENFEAV---SHRGEVVTLDDGSVVIDDSYNANPDSM-- 341 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + + + +I V GDM E+G S FH +L E + I + + G +L Sbjct: 342 --NAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAV 399 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLL 465 + + ET + L ++ +V G V+ K+SN ++L + L+ Sbjct: 400 EGYGEGAR--HFETQEELLAALKEEMVKGPHAVLFKASNFMKLFKLADELV 448 >gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] Length = 462 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 197/471 (41%), Gaps = 29/471 (6%) Query: 1 MN-PLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MN L T + + + I P + +S DSRS+ P FFAI+G DGH+F+ Sbjct: 1 MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQ 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A GA VV +S+P V D AL A R + +IA+ GS G Sbjct: 60 AASDAGAAAAVVTH-----FVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114 Query: 119 KTTTKEMLTIALSSIKKTYACIGSY---NNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTTT +M+ + + A +G+ NN +GV L L ++ + FE+GM+H+GE+ Sbjct: 115 KTTTTQMVLSIIKERFQKGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEM 174 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 R L + P I +T H + +EE A E+F L + G +N D F Sbjct: 175 RPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEW 234 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + G + +FG + + E + + +++ G H N Sbjct: 235 RK---MAGNNRVVTFGTPDSDVYAC-----EVEGTAFRLVTPIGQIDIELKVPGKHNIVN 286 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + ++ + D+ K L F R +ID+SYNANP SM Sbjct: 287 AVNAAAVLFAMGRDLCDIKKGLENFEAV---SHRGEVVTLDDGSVVIDDSYNANPDSM-- 341 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + + + +I V GDM E+G S FH +L E + I + + G +L Sbjct: 342 --NAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAV 399 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLL 465 + + ET + L ++ +V G V+ K+SN ++L + L+ Sbjct: 400 EGYGEGAR--HFETQEELLAALKEEMVKGPHAVLFKASNFMKLFKLADELV 448 >gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 438 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 128/456 (28%), Positives = 202/456 (44%), Gaps = 38/456 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-L 81 + + I +DSR F I G H DGHDFI AV++GA V+ + D+ Sbjct: 10 DERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKKYP 69 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + + V D AL ++ + R + +I +TGS GKTT + ML +ALSS ++ + G Sbjct: 70 EVRFWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVFQTAG 129 Query: 142 SYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 + N+ +GVP+TL ++ + + ELGMS GE+ + + R +A+IT I AH+ N Sbjct: 130 NANSQLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENL 189 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 E I K I +G ++LN +D L + S GK F Sbjct: 190 KTKENILLEKLHILDGAADGAALYLNGEDPLLASLTEERIH---DLGISLGKRVELHFYR 246 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + +Q L + L + ++AL F Sbjct: 247 AEEEIPLSAAGHHMQQN------------------AAAALAVSLDLGLQREGVLRALRGF 288 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 +GRG L++ ++D+SYNA+P ++KA++ V +S R+IA+L DM E Sbjct: 289 SGLKGRG---EKLLSRSGIGILDDSYNASPDALKASLLV---LSKEKGRRKIALLSDMLE 342 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---------IHVHYSETMD 431 +GE S+ H D LS I V L G L + + R I V + + Sbjct: 343 LGERSEELHEDCGAFLSSLPIDRVLLYGEKSLGILRGIRREEKRRGDGRQIPVSHFSNAE 402 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L+ + GD+V+ K S+S G RL+ EE Sbjct: 403 ELYRELLREAAPGDLVLFKGSHSMGLSRLVERFREE 438 >gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis HTCC2594] gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis HTCC2594] Length = 498 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 180/473 (38%), Positives = 245/473 (51%), Gaps = 26/473 (5%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LW+ ++ A G + G G+ +DSR + P + F A+KG DGH F+ A Sbjct: 35 ALWSAQEIAAATGGTASG---DFQCAGVEMDSRDVRPGDLFVALKGESMDGHRFVEKAFA 91 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V + P V+D AL LA AAR R+ A I +TGSVGKT Sbjct: 92 AGAAAALVERP-------VDWPHVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGV 144 Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE + AL + + + SYNNH+GVPL+LARMP +G+FE+GM+H GEI LT Sbjct: 145 KEAIFAALEKSSRGQAHRSVRSYNNHVGVPLSLARMPARSRYGVFEMGMNHAGEIAGLTD 204 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 VRPH+AVITTIAPAH+ N IE IA AKAEIFEGL K GT + D +E L+A + Sbjct: 205 HVRPHVAVITTIAPAHIENLGSIEAIADAKAEIFEGLVKGGTAVIPADSEQYEQLRASAE 264 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G+ TI SFG++ +AD +L + S + Q++ + G H N L Sbjct: 265 KRGV-TIVSFGRADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAV 323 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L V D+ A AL+ +GRG R+ A+ G LIDESYNANPASM + Sbjct: 324 LAAVQAAGGDLGAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASM---RAT 380 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q+ RRIAVLG M E+G+ FH LAE + ++ + L G +LAL L Sbjct: 381 LRQLGQTPATRRIAVLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGDEMLALARHLG 440 Query: 420 RSIHVH--------YSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 ++ + + +Q L GD ++VK SNS G +L++ Sbjct: 441 KAGSGTLGKTPAFAHCDGPAEAIAALQEYGLTAGDAILVKGSNSIGLGKLVDH 493 >gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 464 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 116/446 (26%), Positives = 184/446 (41%), Gaps = 25/446 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G+ D+R I P +FA+KG +DG+ F A+ KGA L V++ + V Sbjct: 28 GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDNPAY----QIDERTLLV 83 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL AL +LA R K II ITGS GKTTTKE++ LS + A G+ NN IG Sbjct: 84 PDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEGNLNNAIG 143 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + D I E+G +H EI L+ + P IT+I AHL F E + Sbjct: 144 VPLTLLSIKPETDIAIVEMGANHPHEIADLSRIAEPDYGYITSIGKAHLEGFGSFEGVIK 203 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQC 266 KAE+++ L+ + D + + +A + + + + Sbjct: 204 TKAELYDYLKAHQKTIIYNADDTLQQSLVEGYANVYSFGTTDEVNVPVACVAVQPVSIRF 263 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-----------LGIVSILTADVDTAIK 315 SE S ++ + + + + Sbjct: 264 SEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGSYNFNNIAAAVAFGRYFRLPAA 323 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 A+ K + G TL+ ++YNANP+SM AAI + + + + +L Sbjct: 324 AIKRGIEKYVPHNNRSQLMAWGTNTLLLDAYNANPSSMAAAIHNVLTMPNFTKK--VLIL 381 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G+ + + H + + L+ + V+L G H K P+ ET + Sbjct: 382 GDMFELGDYAAAEHQQIVDSLTPHQWEGVYLVGQHFAQTKSPYPQ------YETFEAFQE 435 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLI 461 + ++++K S RLI Sbjct: 436 AFKQLTFTDSLILIKGSRGMALERLI 461 >gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. D22] gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. D22] Length = 431 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 114/436 (26%), Positives = 187/436 (42%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEG--DQRYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIG Sbjct: 73 DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K I + D+ L S L + + + Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G++ +V IG + N L + I + KAL+ + P+ R + Sbjct: 249 AFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 309 LKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGADSPAE 361 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + N VWL G A + + + + +Q G ++ Sbjct: 362 HQKIVDYIKESNFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKPKGYTIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 416 IKGSNGIKLSSTVEFL 431 >gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963] gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963] Length = 870 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 119/474 (25%), Positives = 209/474 (44%), Gaps = 22/474 (4%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL A QG Q G S D+R I P E F A++G DGHD++ A+++GA ++ Sbjct: 7 LLAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLL 66 Query: 70 VNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V T + S+ I V+D AL A R + TIIA+ G VGKT+ K Sbjct: 67 VETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMK 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E + LS T+ +YN+ +G+PL+L R+ ++ + ELG H GE+ L +V+ Sbjct: 127 EAIASVLSRNYATFRSWKNYNDLLGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMVK 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI ++T +AP L F +E +A +E+ L G +LN D+ + A Sbjct: 187 PHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDARLVEIVAHYQQQR 246 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLG 301 + + + + E ++ +G+ + G ML Sbjct: 247 GSAVPDIRPLGIREINETQIRVGWEGLSFTLEQEGEMGTLTLASRLLGRQHISTMLAAYR 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + +AL P EGR L+D+++NA+P S+ A + L Sbjct: 307 IGRACGMSAEEVSEALEQLGPIEGRLN---PLPGVYESRLLDDTHNASPGSVLAGLQALD 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +++ + G+RIA+LG+M +G ++ + E + + ++ L G + ++ ++ Sbjct: 364 ELT-NEGGKRIAILGEMLNLGYYQDDWYEQIGEQAA-SKVDYLILRGERTALIAESARQA 421 Query: 422 I----HVHYSETMDGLFLFIQSSL-VDGD----VVVVKSSNSCGFYRLINLLLE 466 + T + ++ L +G+ VV++K S + R+ +L+ Sbjct: 422 GLASEQIELVSTHEDAAQLARAYLEREGEAGRNVVLLKGSEATRMERVTEMLMA 475 >gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102] gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. WH 8102] Length = 449 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 129/445 (28%), Positives = 188/445 (42%), Gaps = 21/445 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P V I DSR + F + G +DGH F+ G VV+ D A + S Sbjct: 21 NPDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVSLDWTAPLPS- 79 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + + VDD L A +LA+ R + ++A+TGS GKTTT+E++ L+ + A G Sbjct: 80 GLLHWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQASDG 139 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + NN IGVPLT+ D + E+GM GEI L+ P +AVIT I AH+ Sbjct: 140 NNNNDIGVPLTVLGAGSDHAALVIEMGMRGPGEIARLSRCTEPDVAVITNIGTAHIGRLG 199 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E IA+AK EI L G + + D E A + + Sbjct: 200 SREAIATAKCEITAALHPQGVVVIPAGDPLLEQALAAVWQGRVLRVRL--------EDDP 251 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + +L + G H A+N+L+ L + S L D A + Sbjct: 252 DITADLIGAARNDRLLLDEASIPLPLDGRHNARNLLLALAVGSHLGVDP-----ASAAQL 306 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 G R R L QG TL+DE+YN + A+ + GRR AVLG M E+ Sbjct: 307 QVNIPGGRNR-RLQQGGLTLLDETYN----ASPEAVLAALDLLADQPGRRFAVLGTMLEL 361 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 G+ S H +A + + V L G A+ + + + T + + + Sbjct: 362 GDRSIELHQQVAARAAALKLDGVVLVDGGDEGQAMANVVSCLDRLALVATPEAAAVPLGQ 421 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 L GDVV++K+S RLI LL Sbjct: 422 WLQAGDVVLLKASRGVALERLIPLL 446 >gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus jostii RHA1] gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus jostii RHA1] Length = 504 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 124/501 (24%), Positives = 196/501 (39%), Gaps = 52/501 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T + + + G P V G + DSR + F A+ G H DGHD Sbjct: 1 MIPM-TLARIAEIVGGELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-----LGALN----------------- 96 AV+ G V+ + +P V A+ Sbjct: 60 SAVEAGVVAVLAARP-------VGVPAIVVTPTPSDVPSKAMALEHDTDGSGAAVLAALA 112 Query: 97 ---KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 + +V T++ +TGS GKT+TK++L L + A GS+NN +G P T Sbjct: 113 KLARASVDGLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTA 172 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R D F + E+ G I L ++ P I V+ + AHL F + IA+AK E+ Sbjct: 173 LRADADTGFLVLEMSARGRGHIASLANIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGEL 232 Query: 214 FEGLEKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E L LN DD + ++ A + S A + K ++ Sbjct: 233 AESLPSADEGGVAILNADDPLVAAMAPRTSARVVLVGRSESAHVRATDIVLDEKA---RA 289 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + S+ V G H N L + AD++ +ALS R Sbjct: 290 RFTLTAPTGSVAVELAVHGEHQVGNALAAAAVALECGADLEQIAQALSGAAAVSARRMDV 349 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQS 387 R + T++++SYNANP SM+AA+ L ++ G G R AVLG+M E+G S Sbjct: 350 RDRPDGV--TVVNDSYNANPDSMRAALKALVSMARSGRGAARRSWAVLGEMAELGPESVV 407 Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441 H + ++S + + G A+ + G +++ L Sbjct: 408 EHDAIGRFAVRLDVSRLIIVGTGRPARAMHQGAVMEGSWGEESILVPDIAGAVALLEAEL 467 Query: 442 VDGDVVVVKSSNSCGFYRLIN 462 GD+V+VK+S S G + + + Sbjct: 468 APGDLVLVKASQSIGLWEVAD 488 >gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 481 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 123/482 (25%), Positives = 197/482 (40%), Gaps = 27/482 (5%) Query: 5 WTFHDLLQAIQGHSIGIV--------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 + + I G+ G + + DSR + F +KG +DGHD+ Sbjct: 1 MNLEEFCEIIDGNVCYKSVDFKMPCEQDGKMFNVVTDSRDVKKGCIFVCLKGEFHDGHDY 60 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKAT 109 + A + GAG+++VN D A + + V V L A+ +LA Sbjct: 61 VRQAAEDGAGIIIVNEDKKADVMKAIDDARAMNTSVISVKAPLYAMGELAKWYISYLGVK 120 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I ITGSVGKTT K+M+ L S TY G++N+ IG+PLT MP D +FELGM Sbjct: 121 TIGITGSVGKTTVKDMVASVLPSAMNTYKTKGNFNSLIGLPLTALSMPRDTSLCVFELGM 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 GEI L+ ++ P +A+IT I +H+ E I AK+EI ++ GT+ L D+ Sbjct: 181 DAKGEIDRLSEIIAPDVAIITKIGVSHVERLGSRENIFRAKSEIVNHIKPGGTLILGVDE 240 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L K + D + + Sbjct: 241 DEQYLKKENFTGNFNVIEVTAKHYAGVDSNTYCVENVRDDMEGIRFEFSGGGYEKIPVTI 300 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + + G+ D ++++ + +G T ID+SYNA+ Sbjct: 301 NTHGIHNALNAGLAIACGLQFDIDLESIKEGLKNVNFTAKRLEIKEKGGITFIDDSYNAS 360 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P SM +A+ VLSQIS +GR +AVLGDM E+G+ S+ FH + ++ I + G Sbjct: 361 PESMSSALRVLSQIS---KGRMVAVLGDMNELGKDSEDFHKRIGRLVFDLGIEELIAVGE 417 Query: 410 HVLALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + + + E + +GD V++K+SN+ + Sbjct: 418 KGRGYIEGFSEAAEIEGKKNDVQIVWIEDSKKCRDACFKHISEGDWVLLKASNALKLSSI 477 Query: 461 IN 462 + Sbjct: 478 LE 479 >gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 487 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 186/497 (37%), Gaps = 44/497 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF--- 56 M L T ++ +A+ G V G + DSR + F A+ G DGHDF Sbjct: 1 MIEL-TLAEIAEAVSGRLHRADGGERVTGSVEFDSRKVTDGGLFVALPGERADGHDFAAS 59 Query: 57 --------------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD--------VLGA 94 + A V+V S+ + G D L A Sbjct: 60 AVAAGAAGVLAAREVD------APAVIVPPLPPGQAHERSVALAGDTDGSGAAVLAALAA 113 Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 L + V + T++ +TGS GKT+TK+++ L + T A GS+NN +G P T Sbjct: 114 LARHVVTRLSETGLTVVGVTGSSGKTSTKDLIAQLLEPLGPTVAPPGSFNNELGHPWTAL 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 R + EL G I L + P I V+ + AH+ F E IA K E+ Sbjct: 174 RADRKTRHLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHVGEFGSQEGIARTKGELV 233 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E L G LN DD F + ++ A + G+S AD + + E + Sbjct: 234 EALPAEGVAVLNVDDPFVAEMAQRTSARVVG----VGESPKADVRAENVRL-DEHARASF 288 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 L L + + A + +R Sbjct: 289 DLVAGGERAEVRLQLVGEHHVGNALAAAAVALELGMPLSEVAAGLSAATRRSERRMEVTT 348 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 T++++SYNANP SM+AA+ L+ ++ AVLG M E+G S S H ++ Sbjct: 349 RSDGVTVLNDSYNANPESMRAALKTLASMTSSRRSW--AVLGVMSELGADSVSAHDEIGR 406 Query: 395 VLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + NI+ + + G A+ D ++ L DVV+VK Sbjct: 407 LAVRLNINRLVVVGEQAAAMHRGASHEGSWGEESVLVPDTDAAVALLREQLRPNDVVLVK 466 Query: 451 SSNSCGFYRLINLLLEE 467 +S +R+ + LLEE Sbjct: 467 ASKVAELWRVADALLEE 483 >gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CMC 3f] gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CMC 3f] Length = 431 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 110/436 (25%), Positives = 186/436 (42%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDK--RYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIG Sbjct: 73 DNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K I + D+ L + L + + + Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--AYLMNIAQGLNLISYGTEDDLYVNGQITDN--SPYL 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G+ +V IG + N L + I + +AL+ + P+ R + Sbjct: 249 AFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGAESPAE 361 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + VWL G A + + + +Q++ G ++ Sbjct: 362 HQKIVDYIKESGFEKVWLVGELFAASEHSFKT------YANAQEVIKDLQANKPKGYTIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 416 IKGSNGIKLSSTVEYL 431 >gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brachybacterium faecium DSM 4810] gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brachybacterium faecium DSM 4810] Length = 495 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 124/486 (25%), Positives = 209/486 (43%), Gaps = 23/486 (4%) Query: 6 TFHDLLQAIQGHSIGIVP-QGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ G +G V G + IDSR + P + F A G H DGHDF+ A Sbjct: 5 TAREIAAVTGGELVGGATGDELVTGTARIDSREVGPGDLFAAFLGEHVDGHDFLDAARTA 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVL-----GALNKLAVAARLRSKATIIAITGSVG 118 GA L +V A+ S+P VDDV A +LA A + + ++A+TGS G Sbjct: 65 GAALSLVTD--AAAAAEHSLPAVRVDDVRDALAALARAQLARARQENPQLVVLAVTGSAG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TK++L L S T A +GS+NN +G+PLT+ ++ + F + E+G +G I L Sbjct: 123 KTGTKDLLGTILRSAGPTVAPVGSFNNELGLPLTVLQVTGETRFLVLEMGARGIGHIAEL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + RP ++++ + AHL F ++ IA AK E+ + L G LN +D + + Sbjct: 183 TEIARPDVSLVLNVGSAHLGEFGSVDAIARAKGELVDALAPGGRAILNAEDRLVAAMAER 242 Query: 239 SHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 S A + ++ G + + + + + Sbjct: 243 SAAPVVTWGFTTGDVRGAELTLDEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGE 302 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 L ++ + A + + L G +ID++YNANP S+ Sbjct: 303 HQAANVLAALTAALMAGVDSASATAALDGATLASGQRMQVLRAGGALIIDDAYNANPDSL 362 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 + A+ L+ + R IAVLG+M E+G + H ++ + NI +++ G Sbjct: 363 RQALKTLAHLGRRH--RTIAVLGEMLELGPDTVRLHDEIGRLAVRLNIGQLYVVGEGAAP 420 Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE--- 466 + Y +T++ ++ + GD V++KSS G R+ L+E Sbjct: 421 IHHGASLEGSFGGESEYLDTVEEAIAVLERIVQPGDAVLLKSSRDAGLRRIAAPLVEHLA 480 Query: 467 EFPAIQ 472 + PA + Sbjct: 481 QRPAAE 486 >gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 482 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 123/477 (25%), Positives = 203/477 (42%), Gaps = 25/477 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +++QA + + ++G +IDSR++ Q F A +G DG+ + A+ GA Sbjct: 5 TTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGA 64 Query: 66 GLVV----VNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118 VV + +++ + + DD L +LA R ++ T++ +TGS G Sbjct: 65 SCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCG 124 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+ML LS+ +TY ++NN IG+PLT+ P D + + E+GM+H GEI + Sbjct: 125 KTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISRM 184 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIAS------AKAEIFEGLEKTGTIFLNYDDSFF 232 + +P IAVIT I +HL + IA A + + + L+ D F Sbjct: 185 ALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFT 244 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGY 290 + + G+ ++ + K G +V G Sbjct: 245 TFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGK 304 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + L + IL D A AL R +ID+SYNA P Sbjct: 305 ACVIDACFALRVCEILGVSYDKACCALLHMKQV---HMRMEEIKKPHLPLIIDDSYNAAP 361 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-F 409 AS+ A+ VL Q + GRRIA+LG++ E+G + H + ++ N+ V G Sbjct: 362 ASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGSD 419 Query: 410 HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 H + +A S + Y +D ++ L DV++VK+S S + + Sbjct: 420 HAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 476 >gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CC 2a] gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides xylanisolvens SD CC 1b] gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides ovatus SD CC 2a] gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides xylanisolvens SD CC 1b] Length = 431 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 112/436 (25%), Positives = 186/436 (42%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEG--DQRYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIG Sbjct: 73 DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K + D+ L S L + + + Sbjct: 193 TKGELYDFLRKKDATTFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G++ +V IG + N L + I + KAL+ + P+ R + Sbjct: 249 AFEWKAGKDGEAHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDKALAEYTPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGADSPAE 361 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + + VWL G A + + + + +Q G ++ Sbjct: 362 HQKIVDYIKESDFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKPKGYTIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 416 IKGSNGIKLSSTVEFL 431 >gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603] gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 127/465 (27%), Positives = 203/465 (43%), Gaps = 17/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQ 62 ++ + Q I + I VN + DSR I FFA+ G DGH+FI Q Sbjct: 6 YSITQIQQIIGASAT-ITHDSMVNNLLTDSRKINNPFTSLFFALSG-RRDGHEFIGDVYQ 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G VV V VDDVL AL KLA+ R + +I ITGS GKT Sbjct: 64 AGVRNFVVFKLPVKVDLLRDANFLVVDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIV 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + KK SYN+ IGVPL++ +M + GIFE G+S GE+ L ++ Sbjct: 124 KEWLYQLLCADKKIIRNPKSYNSQIGVPLSVWQMDDQHNLGIFEAGISTTGEMERLERMI 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I ++T + AH F S + E K T + LLK K+ Sbjct: 184 KPTIGILTHMGSAHDEGF-------SGPEKKLEEKLKLFTHCSMVIYQYDALLKYKARVP 236 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G K + D + S + ++ +GK +E + I +N ++ Sbjct: 237 GKTKFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWAT 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D A L P R + + N ++ID+SYN++ S++ A++ L+Q Sbjct: 297 MLALGYDSQVADDRLERLVPVSMRMELKQGINN---CSIIDDSYNSDFQSLEIALNFLNQ 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + H +L D+ + G + +A++LS NI V G + A + + Sbjct: 354 QNQHQTR--TLILSDIFQSGLEQAVLYQQVADLLSQKNIDKVIGVGKAISAQQQLFNIPL 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Y++T D L + + ++ + +++K S S F R+ L+++ Sbjct: 412 KYFYADT-DSLLMALADLTLEDETILIKGSRSFEFERISRALVQK 455 >gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 491 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 123/477 (25%), Positives = 203/477 (42%), Gaps = 25/477 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +++QA + + ++G +IDSR++ Q F A +G DG+ + A+ GA Sbjct: 14 TTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGA 73 Query: 66 GLVV----VNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118 VV + +++ + + DD L +LA R ++ T++ +TGS G Sbjct: 74 SCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCG 133 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+ML LS+ +TY ++NN IG+PLT+ P D + + E+GM+H GEI + Sbjct: 134 KTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISRM 193 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIAS------AKAEIFEGLEKTGTIFLNYDDSFF 232 + +P IAVIT I +HL + IA A + + + L+ D F Sbjct: 194 ALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFT 253 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGY 290 + + G+ ++ + K G +V G Sbjct: 254 TFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGK 313 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + L + IL D A AL R +ID+SYNA P Sbjct: 314 ACVIDACFALRVCEILGVSYDKACCALLHMKQV---HMRMEEIKKPHLPLIIDDSYNAAP 370 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-F 409 AS+ A+ VL Q + GRRIA+LG++ E+G + H + ++ N+ V G Sbjct: 371 ASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGSD 428 Query: 410 HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 H + +A S + Y +D ++ L DV++VK+S S + + Sbjct: 429 HAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 485 >gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 553 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 136/554 (24%), Positives = 219/554 (39%), Gaps = 92/554 (16%) Query: 1 MNPLWTFHDLLQAIQGHSI--------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M+P+ +L++A G + G S DSR+I EAFFA+KG ++D Sbjct: 1 MDPI-RLKELIRATSGQLFFSADSAMRKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFD 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 GH F+ AV+ GA +VV+ A + +P V+D L AL KLA R T++A Sbjct: 60 GHAFVERAVRAGAVALVVSDLKCAELWQAELPTILVEDTLTALQKLAAYYRQNYLHTLVA 119 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKT+T+EM+ AL + NN IGVP T+ ++ D + E+GM H Sbjct: 120 ITGSVGKTSTREMIAAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHA 179 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G++ L+ L +P IAVIT I H+ I AKAEI GL+ G + LN DD F Sbjct: 180 GDLTKLSRLAQPDIAVITNIGYCHIEQLGSQMAIMRAKAEIINGLKADGVLLLNADDPFL 239 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLR----------------------KWKQCSEQS 270 L A+ + + + Sbjct: 240 RQLAAEQKGKIKQAFVALNTCPPDLPGDCLVATDVKIEVDGCASFIIKLQQAPDLEKYGT 299 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + G H N L L +L + A L F Sbjct: 300 MEAFVDSNRLPRIKLPVPGEHHVINALFGLATAHLLHQPLTLAANGLRDFS----VIGNR 355 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + +N LI+++YNA P S++A + L ++ + R IAVLG + E+G ++ H Sbjct: 356 QRIMNADGVVLINDTYNAAPESIRAGVKTLCFLAHSEKRRAIAVLGGIAELGNMADRLHY 415 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-------------------------- 424 +L L+ +++ +WL G +V A+ + Sbjct: 416 ELGRYLATADLAEIWLCGPYVAAVAQGIADGDQAGDQADSQAGGKGDRSPGASGTEPAVD 475 Query: 425 ------------HYSETMDGLFLFIQ-------------------SSLVDGDVVVVKSSN 453 + SE+ I+ ++ D D++++K S+ Sbjct: 476 LASESVALTATNYTSESRARAEATIKPPVKVHVFADRDSLTAELLPTIQDRDIILIKGSH 535 Query: 454 SCGFYRLINLLLEE 467 S ++ + ++ + Sbjct: 536 SFAMEKVCDAIISK 549 >gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Bacteroides xylanisolvens XB1A] Length = 431 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 111/436 (25%), Positives = 185/436 (42%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEG--DQRYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DD L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIG Sbjct: 73 DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K I + D+ L S L + + + Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G+ +V IG + N L + I + +AL+ + P+ R + Sbjct: 249 AFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALAEYTPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFQNMTVP---HKMLILGDMRELGADSPAE 361 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + + VWL G + + + + +Q G ++ Sbjct: 362 HQKIVDYIKESDFEKVWLVGEQFATSEHSFKT------YADVQEVIKDLQEDKPKGYTIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 416 IKGSNGIKLSSTVEFL 431 >gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915] Length = 447 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 196/467 (41%), Gaps = 24/467 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + + ++ A+ G + V + +D R P F A G H DGHDF Sbjct: 1 MIAM-SVGEIAAAVGG-LVAGDRAVTVTAAAVLDGREARPGGLFVAFDGEHVDGHDFAGQ 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSV 117 A Q GA V+ + V +P VDD V ARLR+ T+IA+TGS Sbjct: 59 AGQAGAVAVLGSRPTV-------LPTVVVDDVQAALQALAAHVLARLRAGLTVIAVTGSQ 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK+ L L+S+ T A + + NN +GVPLT+ R + F + E+G H G+I Sbjct: 112 GKTSTKDQLGAVLASVAPTIATVANRNNELGVPLTVLRAGPETRFLVLEMGARHTGDIAM 171 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT+L +AV+ + AHL F E I AK E+ GL GT LN DD L+++ Sbjct: 172 LTNLYPLDVAVVLNVGTAHLGEFGSREAIGRAKGELVRGLVPGGTAVLNADDPRVALMRS 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 L + +FG + +AD ++R + V Sbjct: 232 ----LSDGPVLTFGYADHADVRVRDLTLDRFGRPSFTLCTADASVGVTLPFVGGHQAGNA 287 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ A+ R + TL+++SYNA+P S +AA+ Sbjct: 288 SAATAAALAAGVSLDVAAAVLGTASLSKWRMELRHLTSGV--TLLNDSYNASPDSTRAAL 345 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 + RRIAVLG+M E+G+ S++ H + E + V G V L D Sbjct: 346 DA---LLAVEGARRIAVLGEMRELGQASEAEHRAVGEYAAAR-ADMVIAIGETVRPLADG 401 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D ++ +L GDVV+VK+S + + Sbjct: 402 A--GDRAVVLADNDAAVKWLHGNLAAGDVVLVKASRGARLDEVAAAI 446 >gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483] gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides sp. D2] gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483] gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 431 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 110/436 (25%), Positives = 185/436 (42%), Gaps = 19/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDK--RYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L + +LA R + +I ITG+ GKTTTKE+++ L +G+ NNHIG Sbjct: 73 DNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K I + D+ L + L + + + Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--AYLMNIAQGLNLISYGTEDDLYVNGQITDN--SPYL 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + G+ +V IG + N L + I + +AL+ + P+ R + Sbjct: 249 AFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQNNRSQ 308 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S + Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGAESPAE 361 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + + VWL G A + + + +Q+ G ++ Sbjct: 362 HQKIVDYIKESGFEKVWLVGELFAASEHSFKT------YANAQEVIKDLQADKPKGYTIL 415 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 416 IKGSNGIKLSSTVEYL 431 >gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis] Length = 446 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 136/467 (29%), Positives = 193/467 (41%), Gaps = 25/467 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL ++ + + G + G V +DSR P F A G H DGHD+ Sbjct: 1 MIPLG-LGEIAEIVGGKATG--ESVTVTAPAVLDSRQAEPGGLFVAFAGEHADGHDYAER 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 A + GA V+ + S+P V+DV AL LA RLR T++ +TGS Sbjct: 58 AGRAGAVAVLGSRP-------TSLPTVVVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQ 110 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT TK++L LS T A GS NN +GVPLT+ R F + E+G H G+I Sbjct: 111 GKTGTKDLLAAVLSGAGPTVATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAE 170 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT LV P IAV+ + AHL F IA AK E+ +GL GT LN DD + Sbjct: 171 LTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASMS- 229 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 L + +FG++ AD Q+ + + + Sbjct: 230 ---VLTDGPVLTFGRTDPADVQVLDVVLDRLGRPSCTLRTVDTSARLALPLVGAHQALNA 286 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ A + R TL+++SYNANP S +AA+ Sbjct: 287 SAAAAAALAAGVPLDL--ATTALTTASLSPWRMELRDLACGATLLNDSYNANPDSTRAAL 344 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +S GRRIAVLG+M E+G+ S++ H + + V G L D Sbjct: 345 DA---LSAIEGGRRIAVLGEMLELGDGSEAEHRAVGAYAAARADVVV-AVGEAARPLADG 400 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D +++ L GDVV+VK+S + L Sbjct: 401 A--GERAVVLAGNDAAVDWLRDHLAAGDVVLVKASRGARLDEVAAGL 445 >gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] Length = 456 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 14/441 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 IS+DSR+I + F AIKG ++DGHDF+ ++KG VV+ D + + P Sbjct: 27 TFKNISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVI-RDGMQHLLPEKFPY 85 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 + V + L + KLA+ R ++ ITGSVGKTTTKEM+ L + K +YNN Sbjct: 86 WLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLTQLNYNN 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IGV T+ I E+GM LG+I L+ P IAVIT I +H+ E Sbjct: 146 EIGVGRTILDSDFKDKILIIEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKEN 205 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I AK EI + L+ +G + + +D F E K+ + I + ++ D Sbjct: 206 ITYAKCEITKYLKPSGVVIIPANDLFLEETLKKNWSGRIIKVDLLDINQKVD-------S 258 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++++ + + + ++ + + + + + I+ Sbjct: 259 INKKNLIGFFNRSNNSIIIEDKLFEISLKGFHNAFNFLFVYAVAKEFGIEFKDTNKFNFL 318 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + + DE+YNA+P S+ + + G + E+G S Sbjct: 319 TLDGRNKIIKSKKTVIYDETYNASPESL----KACIINLLNNPNNHFLIFGSIQELGSKS 374 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + +H +L + + +I + D L +S + ++ + + I Sbjct: 375 KKYHKELFDFIVKSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGITINKYTKK 434 Query: 444 GDVVVVKSSNSCGFYRLINLL 464 GD ++VK S + ++ + Sbjct: 435 GDFILVKGSRNWQLESILKSI 455 >gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37] Length = 447 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 198/466 (42%), Gaps = 22/466 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + ++ + G G +D R P F A G H DGHD+ A Sbjct: 1 MIPL-SLDEIAAVVSGTVEGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 + GA V+ + ++P V+D AL LA RLR + T++ +TGS G Sbjct: 60 GRAGAVAVLGSRP-------TTLPTVVVEDARAALQALAAHVVARLRDRLTVVGLTGSQG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++L LS T A IGS NN +GVPLT+ R D F + E+G +G I L Sbjct: 113 KTSTKDLLAAVLSHTGSTVATIGSLNNELGVPLTMLRTTPDTRFLVLEMGARGIGHIAEL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV +AV+ + AH+ F E IA+AKAE+ +GL GT LN DD +++A Sbjct: 173 TALVALDVAVVLNVGQAHIGEFGSREAIATAKAELLQGLVPGGTAILNADDPRVLVMRAL 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG++++A ++ + V + Sbjct: 233 TDGPAL----TFGRAEHAHVRVLDLALDRLGRPAFTLRTADASAPVALPLVGAHQALNAS 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A R +L+++SYNANP S +AA+ Sbjct: 289 AAAAAGLAAGIPLDVTAATLATASLSKWRMELRGLSGGV--SLLNDSYNANPDSTRAALD 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ GRRIAVLG+M E+G+ S++ H + E + V G + + Sbjct: 347 A---LAAIEAGRRIAVLGEMRELGDDSEAEHRAIGEYAARA-ADLVVAVGEAAAPIAEGA 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D +++ +L GDVV+VK+S + L Sbjct: 403 --GDRAVALADNDAAVDWLRRALTAGDVVLVKASRLARLDEVAAAL 446 >gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 194/465 (41%), Gaps = 16/465 (3%) Query: 5 WTFHDLLQAIQ--GHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 ++ +L + + ISIDSR+I + F AIKG +DGH F+ + Sbjct: 3 FSLSELKNVLGDIKNLKEGGEDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KG VV+ + + P + V+D L A KLA+ R + I+AITGSVGKTT Sbjct: 63 KKGVKSVVI-KKGMQKSLPIDFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTT 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ L + + ++NN IGV LT+ V+ + E+GM LG+I L+ Sbjct: 122 TKEMMGEVLKKLGRIKLSYSNFNNEIGVGLTILDTDVEDKVLVLEMGMRGLGQIENLSKY 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAVIT I AH+ + I AK EI + L G + + +DS E + Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDSLLEETLKEFWK 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + + + + + + G+H A N L G Sbjct: 242 GRVIKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFEISFGGFHNASNFLFAYG 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L I S L T+ DESYNA+P S+KA I L Sbjct: 302 VAKELG------IDFSSFNKFNFASLGGRNKILKSVKTTIYDESYNASPESVKACIKTL- 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLAL-KDALP 419 + + G M E+GE S+ +H ++ +++ +I +++ + + L Sbjct: 355 ---LEKPRNQFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCLFICDKKNERIYANYLK 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + I S GD +++K S ++I L+ Sbjct: 412 DNKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456 >gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alistipes sp. HGB5] Length = 414 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 125/436 (28%), Positives = 185/436 (42%), Gaps = 36/436 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R I P FFA+ G +DG+ F A+ KGA VVV+ S V Sbjct: 14 ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVDDPAAVSGDRT----VLVG 69 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R I+AI+GS GKTTTKE+++ L+ + YA G+ NNHIGV Sbjct: 70 DTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNNHIGV 129 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL M D +FG+ E+G S GEI L + P+ ++T I AHL F G E I Sbjct: 130 PLTLLAMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNIGRAHLEGFGGPEGIRR- 188 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 + L A + D L + Sbjct: 189 -----------------GKGELLDYLAANGGRAFVPR---------EDQTLTNMAAERDG 222 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + + HH G + N+ + + D + A+ + P R +R Sbjct: 223 LAAEYYSVTLADGIAHHLEGDYNRFNIAAAVAVGRYFDIDGERIRHAVGSYMPDNNRSQR 282 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N TLI + YNANP+SM+A++ G RR+ +LGDM E+G S+ H Sbjct: 283 TETERN----TLIVDCYNANPSSMRASVLNFLAEPAGGRSRRVLILGDMLELGAWSEQEH 338 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 D+ + + + + L G + P+ + + + L ++ V+ V+ Sbjct: 339 RDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSREELIAELRRRPVENAFVL 398 Query: 449 VKSSNSCGFYRLINLL 464 VK S G + + L Sbjct: 399 VKGSRGIGLGKALEEL 414 >gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylococcus capsulatus str. Bath] gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylococcus capsulatus str. Bath] Length = 449 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 115/463 (24%), Positives = 181/463 (39%), Gaps = 21/463 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L + + G + + +G+S D+R+I P FFA++G +D HDFI Sbjct: 1 MNLGELAKHVPGAKLSGDAETSFDGVSTDTRAIRPGSLFFALRGDRFDAHDFIAD----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V +P V D AL A A R + +IA+ GS GKTT + Sbjct: 56 AVGGGAAALVVERRIDTPLPQIIVPDGRRALGAAAAAWRAQFDVPLIAVAGSNGKTTVTQ 115 Query: 125 MLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 M+ L++ G+ NN +G+PL L + + ELGM+H GEI +L +L Sbjct: 116 MIAAILAAAFGEERRLATRGNLNNDVGLPLMLFELKAGHRIAVLELGMNHPGEIAYLANL 175 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP +A++T H + +E A + L GT DD + + + Sbjct: 176 ARPTVALVTNAQREHQEFMASVEATAHENGSVIAALPTDGTAVFPADDPCAGIWRKLAGT 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + G + + + + + + + + G H N L Sbjct: 236 RRVIDFARRGTATVSGTF----RTSAGFAEVSITTPAGCWQANLPLAGEHNVHNALAATA 291 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + L F P GRG + R LID++YNANP S++AAI VL+ Sbjct: 292 AALAAGVPPEAIRRGLESFRPVAGRGVQLRTRTG---ARLIDDTYNANPDSVRAAIDVLA 348 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 RI LGDM E+G FH ++ +I + G Sbjct: 349 GFPQ----PRILALGDMGEVGVHGPEFHREIGRYARERDIDTLLALGELSSETVRTF--G 402 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ TMD L + S+ ++VK S R + L Sbjct: 403 TSGHHFGTMDELIAALASADRPEATLLVKGSRFMQMERAVKAL 445 >gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella ruminicola 23] gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella ruminicola 23] Length = 478 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 113/446 (25%), Positives = 184/446 (41%), Gaps = 29/446 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR F A+KG ++G+ F L A++KG +V+ D+ + VD Sbjct: 51 ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDEDVANDP-----RIIKVD 105 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L LA R + +I ITG+ GKTTTKE++ LS G++NN +GV Sbjct: 106 NCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQKYNVLYTQGNFNNDVGV 165 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L P +IT + AHL F E + Sbjct: 166 PKTLFRLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITNVGRAHLQGFGSFEGVIKT 225 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L+ S + N + Sbjct: 226 KCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSPYSTDPDNQYSCISGEVLECNP 285 Query: 270 SWMEVQLQG-----------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + K +V IG + N+L + + D + AL Sbjct: 286 FLKFRWREPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAIAVGINFGVDRKKIVAALE 345 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + N LI ++YNANP+SM+AA+ + + +A+LG M Sbjct: 346 AYEPSNNRSQMTVTEKNH----LIVDAYNANPSSMQAALENFKIMQADNK---MAILGAM 398 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+GE+S H + + L +I VWL G + + ++ + I Sbjct: 399 RELGEVSAEEHQHVVDYLKTSDIKTVWLVGEEFEDTQ------CDFRKFKDVEEVKAAIA 452 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 + G +++K SNS Y+L LL Sbjct: 453 AEQPTGHYILIKGSNSTKLYQLPELL 478 >gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855] gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4] gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855] gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei 5_1_36/D4] Length = 432 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 124/435 (28%), Positives = 195/435 (44%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E++E L G + D L I G+ +L Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGGEGLYISGKLGACAPFL-- 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + +G+ EV H IG + +N L + + + +AL + P R + Sbjct: 252 -SFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S H Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L V L+G + + + + L ++ G +++ Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFQDVVALKESLERYKPKGYYILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SNS +L +L Sbjct: 418 KGSNSMKLGQLQEIL 432 >gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides finegoldii DSM 17565] gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides finegoldii DSM 17565] Length = 432 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 110/436 (25%), Positives = 181/436 (41%), Gaps = 18/436 (4%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 ++ DSR+ F A+KG ++G+ F A+ G +++ A G V Sbjct: 15 SVTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIIDEGEYAVEG--DQRYILV 72 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+ L + +LA R + +I ITG+ GKTTTKE+++ LS +G+ NNHIG Sbjct: 73 DNCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLGNLNNHIG 132 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VP TL R+ + D + E+G +H GEI+FL + P +IT + AHL F E + Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+++ L K + L+ I G N E Sbjct: 193 TKGELYDFLRKKENSTIFIHHDNPYLMNMSEELDRIYYGTQDGLYINGRITDNSPYLAFE 252 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + + + IG + N L + I ++ +AL+ + P+ R + Sbjct: 253 ---WKAGNGNEIHRIQTQLIGEYNFPNALAAITIGHFFGVEMQKIDEALAGYTPQNNRSQ 309 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N TLI ++YNANP SM AA+ ++ ++ +LGDM E+G S Sbjct: 310 LKQTTDN----TLIIDAYNANPTSMMAALQNFRNMAVP---HKMLLLGDMRELGAESNIE 362 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + N VWL G A + + + +++ G ++ Sbjct: 363 HQKIVNYIKDSNFEQVWLVGEQFAATQHNFKT------YANVQEVIKELETQKPKGYTIL 416 Query: 449 VKSSNSCGFYRLINLL 464 +K SN + L Sbjct: 417 IKGSNGIKLSSTVEHL 432 >gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] Length = 426 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 106/446 (23%), Positives = 188/446 (42%), Gaps = 24/446 (5%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++S+ + + F A+KG +DGHDFI A++ GA ++ V S Sbjct: 3 DLLTRRFVLNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSD----- 57 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +F V+ + L KLA T++ +TGS GKTTTKE+L L + + + G+ Sbjct: 58 RIFLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N G+PL++ + + E+ S G+I L + P +AV+ + AHL F Sbjct: 118 NTEYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTR 177 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E I K EI + ++ T +DD + F + D L+ W Sbjct: 178 ERIMETKMEIIKHSKENATAVTLFDDPDLRR------EVPCYRKTLFFGKEGGDSVLKDW 231 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + E + V G + + + + I L+ Sbjct: 232 WYYEGSTIAEFEAFDSLFTVKLSGYWNGGQ-LLNIAASLCVMRALGETVDIFDLASLKTV 290 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR ++D++YNA+P + + +I L + GRR AV+G M E+GE Sbjct: 291 PGRFNVREKKG----VLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGE 342 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 S+ FH +L E L++ + +++LS +K + S+ + + + S + + Sbjct: 343 RSKEFHEELGERLNVLDGVYIFLSEPEAEWIK----SKKIILKSDDPEKIAKDLASRVTE 398 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 GDVV+ K+S + +++ + +E Sbjct: 399 GDVVLFKASRAVRIEKVLEMFEKELE 424 >gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] Length = 488 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 120/488 (24%), Positives = 194/488 (39%), Gaps = 39/488 (7%) Query: 2 NPLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 + L +F + ++A+ G G + ++ DSR++ F + G DGH +IL Sbjct: 14 SSLLSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYIL 73 Query: 59 HAVQKGAGLVVVNTDMVA---------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 A+++GA +V + + V + L AL A A + Sbjct: 74 QALEQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTALQCAAAAYVKKFPDL 133 Query: 110 I-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 I I ITGS GKTTTKE++ LS G+ N+ G+PL++ ++ + + GIFE+G Sbjct: 134 IKIGITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSETGLPLSVFKIRAEHEVGIFEMG 193 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 M+ GEI L +++ P AV+T I AH+ + IA K +IF F+ Sbjct: 194 MNRKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFTADCVAFIPAA 253 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + L G + + + + ++ Sbjct: 254 DPYADFLAENCG----------GTVVRYGVNTDPVSRIKNAGLAGTEFLYRQVPILLPLP 303 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + L + S + D L P GR + G +++ + YNA Sbjct: 304 GAGNFSDALAAASLASYMGFGADDIKAGLESVRPLFGRSQII-----GGPVSVVQDCYNA 358 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM+ A+ + + GR+IAVLGDM E+G S+S H+ + + G Sbjct: 359 NPDSMEQALDFFASLDIE-PGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVLLVCIG 417 Query: 409 FHVLALKDALPR-----SIHVHYSET-----MDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 V A + L R S+ V + + L GDVV++K S Sbjct: 418 RAVSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLLKGSRGMRLE 477 Query: 459 RLINLLLE 466 RL L E Sbjct: 478 RLTPYLTE 485 >gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides vulgatus ATCC 8482] gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides vulgatus PC510] gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides vulgatus ATCC 8482] gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides vulgatus PC510] Length = 432 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 124/435 (28%), Positives = 195/435 (44%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E++E L G + D L I G+ +L Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGGEGLYISGKLGACAPFL-- 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + +G+ EV H IG + +N L + + + +AL + P R + Sbjct: 252 -SFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S H Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L V L+G + + + + L ++ G +++ Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFKDVVALKESLERYKPKGYYILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SNS +L +L Sbjct: 418 KGSNSMKLGQLQEIL 432 >gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf [Rhodococcus equi 103S] gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF [Rhodococcus equi 103S] Length = 506 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 135/496 (27%), Positives = 201/496 (40%), Gaps = 34/496 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T + QA+ G P V+G + DSR I P F A+ G DGHD Sbjct: 1 MIPM-TLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHAA 59 Query: 59 HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDD---VLGALNKLAVAARL 104 AV G +VV + G+L++ VL AL KLA A+ Sbjct: 60 GAVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHDRDGSGAAVLAALGKLARASVD 119 Query: 105 R----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R S T++ +TGS GKT+TK++L LS + A GS+NN +G P T R D Sbjct: 120 RLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADADT 179 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 F + E+ G I L + P I V+ + AHL F E IA K E+ L Sbjct: 180 RFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPSA 239 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279 + + L A + G S NAD + + + ++ + Sbjct: 240 ADG-GVAVLNADDPLVAAMADRTEARVVMVGLSGNADVRATDVRLDDQARASFTLTCAAG 298 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 ++ V G H N L + A +D AL P R R + Sbjct: 299 AVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSARRMEVRDRSDGV-- 356 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396 T++++SYNANP SM+AAI L ++ G G AVLG+M E+G S H + Sbjct: 357 TVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVEHDAIGRFA 416 Query: 397 SLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 +++ + L G V A+ + ++ L GD+V+VK Sbjct: 417 VRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASAIALLEQELRAGDLVLVK 476 Query: 451 SSNSCGFYRLINLLLE 466 +S S G + + + +L Sbjct: 477 ASQSIGLWEVADAVLA 492 >gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA] gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA] gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA] gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA] Length = 432 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 124/435 (28%), Positives = 195/435 (44%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E++E L G + D L I G+ +L Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGGEGLYISGKLGACAPFL-- 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + +G+ EV H IG + +N L + + + +AL + P R + Sbjct: 252 -SFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S H Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L V L+G + + + + L ++ G +++ Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFQDVVALKESLERYKPKGYYILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SNS +L +L Sbjct: 418 KGSNSMKLGQLQEIL 432 >gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] Length = 456 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 124/454 (27%), Positives = 199/454 (43%), Gaps = 23/454 (5%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 V + DSR + F A+ G ++D HDF+ + KGA +V +D+ Sbjct: 19 LPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIVSRSDLAGV 78 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 G F V D L AL ++A A R + ITGS GKTT KEML L + Sbjct: 79 AG-----CFFVPDTLHALQQMAAAWRKAVNPFVFGITGSSGKTTVKEMLAAVLRAKFGAD 133 Query: 138 ---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 A G++NNHIG+PLTL + + + E+GM+H GE+ LT + P A++ Sbjct: 134 AVLATAGNFNNHIGLPLTLLNLRGHHRYAVIEMGMNHFGELAALTRIAAPDTALVNNAMR 193 Query: 195 AHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 AH+ F+G+ +IA AK+EI++GL + G L +D+ + +A + L T + Sbjct: 194 AHIGCGFNGVADIARAKSEIYQGLPENGVALLPAEDANLPVFQAACNGLKTLTFG----A 249 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + D S ++ + + V G H N + + Sbjct: 250 EQGDIHAENIDLQPLSSTFDLVYGTERVRVSLPAAGRHNVANACAAAALAVQAGVSLAEI 309 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 L+ F +GR ++ R N ++D++YNANP SMKAA+ VL++ R+ Sbjct: 310 AIGLAAFGNIKGRLQQKRGIRN---ALILDDTYNANPDSMKAALDVLAKQPA----PRVF 362 Query: 374 VLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432 V+GDM E+GE + H ++ I + + G + + + + D Sbjct: 363 VMGDMGELGEAEAPKMHEEIGVYARELGIEYAYFVGDNSAQAAEKFGAA--GLWFADKDP 420 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L L + L + V+VK S + + L E Sbjct: 421 LILSLAHDLPENASVLVKGSRFMRMEEVADALAE 454 >gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides clarus YIT 12056] gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides clarus YIT 12056] Length = 432 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 123/437 (28%), Positives = 189/437 (43%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR+ F A+KG ++G+ F A++ G+ VV+ A G Sbjct: 14 TGVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAGDTH--YIL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD+ L L +LA R + II ITG+ GKTTTKE+++ LS +G+ NN I Sbjct: 72 VDNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNLNNPI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + + G+ E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 132 GVPLTLLRLKAEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVI 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + G + L + L T + Sbjct: 192 RTKGELYDYLRRQGNSTIFIHQDN-PYLTQIAWGLNPVTYGEEDNLYINGHVTGNSPYLT 250 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + G+ EV IG + N L + I + KAL + P+ R Sbjct: 251 --FEWKAGKAGERHEVQTQLIGDYNFPNALAAITIGHFFGVEAAKIDKALHEYEPRNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM AAIS + G ++ +LGDM E+G+ S Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMLAAISNFHNMQA---GGKMLILGDMRELGKDSPG 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + L Y V L G A + P L +Q + G + Sbjct: 362 EHQKIVDCLEEYGFKDVALVGELFAATRHTYPT------YPDAPALIAELQKNKPCGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN +++ L Sbjct: 416 LIKGSNGIKLNTVVDYL 432 >gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 515 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 196/472 (41%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L T + G V V I DSR + P + A G H DGH FI Sbjct: 1 MIEL-TAPRIAALTSGRLSRTVADELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFI 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113 A++ GA L++ ++ + G P V D + A+ +A R + T++ I Sbjct: 60 EAAIEAGAILIIAEREIADAQGQP-FPAIIVADAVQAMGDIAAEVVQLIRANGEVTVLGI 118 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTK++L L + T A IGSYN +GVPLT+ + + F + E+G + +G Sbjct: 119 TGSAGKTTTKDLLAGILRQLGPTVAPIGSYNGEVGVPLTVFQADLTTRFLVIEMGATRIG 178 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I +L LV+P I V+ I AH F G+E IA AK E+ E L TGT LN D Sbjct: 179 HIEYLAGLVKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALSPTGTAVLNLGDGRVS 238 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + +++ A + + + + S + Sbjct: 239 AMASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVGSNATPSFDLRFPDGSSWPIRSGLIG 298 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + + + A D A + R + T+I+++YNANP Sbjct: 299 IHHVNNLLAAAAAAWAAGADGETIARGLDGQGPKSRWRMERSERADGVTVINDAYNANPD 358 Query: 352 SMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 SM+AA+ VL+++ + R AVLG M ++G S H L +V+ NIS Sbjct: 359 SMRAALRVLAELGRGGADENGKILPQRRTWAVLGPMFQLGAESIREHNALGQVVVRLNIS 418 Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + + G AL + +D + +Q L GD+V+ K Sbjct: 419 RLLVIGAEARALHIGAINEGSWGEESVHVPDLDSAYALLQEELKPGDIVLFK 470 >gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccalis ATCC 35310] gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccalis ATCC 35310] Length = 446 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 116/446 (26%), Positives = 200/446 (44%), Gaps = 26/446 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G++F A++KG V++ V+ Sbjct: 16 VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQK--EYQIQEDERYILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R II ITG+ GKTTTKE+L L+ + G++NN IGV Sbjct: 74 DCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + + E+G SH G+I+ L + P A+IT + AHL F E + Sbjct: 134 PKTLLCLKPEHEMAVVEMGASHPGDIQSLVTVAEPDYALITNVGRAHLQGFGSFEGVMRT 193 Query: 210 KAEIFEGLEKT-----------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 KAE+++ +++ + +KA +A + S + Sbjct: 194 KAELYDYMQQHKPQGLVFINQDNEYLKEMFRTHCPNVKAMGYAQTDRPDISIRGEVVSCA 253 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 K++ + + + EV IG + NML + I S + AL+ Sbjct: 254 PYLKFRWRKTAAAPSPREDTRWHEVQTQLIGAYNLDNMLAAITIGSHFGVSDEQINHALA 313 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + P R + A N+ LI ++YNANP SM+AA++ ++ + +A+LGDM Sbjct: 314 GYVPSNNRSQLQITAHNK----LIVDAYNANPTSMEAALTNFQRMDVPKK---MAILGDM 366 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G++S + H + ++++ N+ VWL G L + + + + ++ Sbjct: 367 RELGDVSMAEHQKIVDLIATLNLDKVWLVGEEFGRTNTTLRK------FKDTEAVREALR 420 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 G +++K SN ++L LL Sbjct: 421 QEPPQGYYILIKGSNGIKLFQLPELL 446 >gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] Length = 437 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 115/443 (25%), Positives = 186/443 (41%), Gaps = 29/443 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M T L + + I + GI D+R + P E F A+ G +DGH F+ Sbjct: 1 MTVTATLSQLAAVLSASLLNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ +GA +V+ + ++PV V + L A +LA R + +I +TGSV Sbjct: 61 EMAIARGAVAAIVD----YTYDYPNLPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTGSV 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE++ L + K + G++NN IGVP TL + DF + E+ M G+I Sbjct: 117 GKTTTKELIASVLGTRGKVHKTYGNFNNEIGVPKTLLELSEGDDFAVIEMAMRGRGQIGE 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LTH+ +P+I VIT + AH+ + IA AK E+ + LNYD+ Sbjct: 177 LTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMPNDSVAVLNYDNPLLMTTAK 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + + G + +++ M + G H N L Sbjct: 237 QVWSGEVISYGFSGGD------------IQGKLVDYQKIEVGGMTLPLPLTGVHNGSNFL 284 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + +L D ++ R + ++DE+YNA P +M AA+ Sbjct: 285 AALAVAKVLDVDWKLLEAGIN----VTMPQGRSQSWKLPKDIMILDETYNAAPEAMLAAL 340 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415 +L+Q + IAVLG M E+GE S H + E + N+ V + G + Sbjct: 341 ELLAQTPGRRK---IAVLGAMKELGERSAKLHQQVGETVRKLNLDGLLVLVDGPDAEIIA 397 Query: 416 DALPRSIHVHYSETMDGLFLFIQ 438 + + I L ++ Sbjct: 398 TSA-QGIPCERCHNHSDLVSLLK 419 >gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 456 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 118/440 (26%), Positives = 189/440 (42%), Gaps = 14/440 (3%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 IS+DSR+I +E F AIKG ++DGH+F+ ++KG VV+ + + ++ P + Sbjct: 28 FKNISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGVKAVVI-KEGMQNLLPYKFPFW 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V D L A KLA+ R + ++ ITGSVGKTTTKEM+ L + K ++NN Sbjct: 87 TVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLSQLNFNNE 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGV LT+ I E+GM LG+I L+ P IAVIT I +H+ E I Sbjct: 147 IGVGLTILDSDFKDKTLILEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENI 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK EI + L G + + +D F E ++ I + K +K + Sbjct: 207 TYAKCEITKHLNPKGVVIIPANDLFLEETLKRNWNGRIIKVDLLDK-------NQKAQSL 259 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 ++ + + + ++ I Q + + + IK Sbjct: 260 NKTNLQGFYNRSNNSVIIEDKIFEISFQGFHNAFNFLFVYAVAKELGIKFKDTNKFNFVS 319 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 L T+ DE+YNA+P S+KA I+ L + G M E+G SQ Sbjct: 320 LNGRNKILKSKKTTIYDETYNASPESVKACINNL----LDNPNNHFLIFGSMQELGNKSQ 375 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 +H DL E++ +I + D L +S + ++ + I G Sbjct: 376 KYHKDLFELIDRSDIKKCIFICDKNDEIYYADYLKKSTKFLFLNEINKVGETINKYTKMG 435 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D +++K S ++I + Sbjct: 436 DFILIKGSRCWHLEKVIKSI 455 >gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter sp. SW2] gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter sp. SW2] Length = 478 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 176/475 (37%), Positives = 247/475 (52%), Gaps = 18/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT D A G S + +G+SID+R++ P + F A+K DGHDF+ A Sbjct: 1 MAPLWTSTDAATATGGRSTTV---WQAHGVSIDTRTLQPGDLFVALKDVR-DGHDFVAAA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA +V+ + + + P+ V DVL L L A R R++A +I +TGSVGKT Sbjct: 57 LAKGAAAALVSR--IPEGVAANAPLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +A SYNNH GVPLTLAR+P DF + E+GM+H GEI L Sbjct: 115 STKEMLRCMLLGQGSVHAAEASYNNHWGVPLTLARLPATADFAVIEIGMNHPGEIAPLAR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + R H+A+ITTIA AHL+ F G+E IA KA I +GLE G L D + +L Sbjct: 175 MARLHVALITTIATAHLAAFDGLEGIAREKATIIQGLEPGGIAVLPTDLAVSPVLLR--- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A +FG +K+ADFQ+ ++ + ++ G + G H A N + L Sbjct: 232 AASAVRSLTFGTAKSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGCL 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT---LIDESYNANPASMKAAI 357 + L+ D A L + P GRG R R L+ LID++YNANPAS+ AA+ Sbjct: 292 AVAEALSLDPTIATHDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAAL 351 Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 VL+ P GRRIA+LGDM E+GE + H+ +A L IS + G + Sbjct: 352 EVLAASQPTDGVGRIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHCVGPLM 411 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L DALP+ + T L + + GD+V+VK S +++ L + Sbjct: 412 RGLHDALPKRQRGEWVATAPELLARAATLVDAGDIVLVKGSKGIKVSLMVDGLRK 466 >gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD1] gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD1] Length = 468 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 110/472 (23%), Positives = 193/472 (40%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ +S DSR++ + F A+KG +D HDF+ Sbjct: 1 MT-MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + AL LA R R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAQAPAGVALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETEI 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + + L F P +GR + R + T++D++YNANP SM+AA Sbjct: 293 AATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGEAAR--HFDDVGTLVDALLAAGYGADASVLVKGSRYMKMERVVDALTNQ 458 >gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] Length = 471 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 122/479 (25%), Positives = 197/479 (41%), Gaps = 38/479 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L G G P V+ I+ D+R+++ + A++G +DGHDF A+ +GA Sbjct: 6 LSLLAHWAGGELHG--PDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V + + P V+D AL ++A + A ++AITGS GKT+ K ++ Sbjct: 64 ALLVER-----LLDVDAPQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALV 118 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L + YA G+ NN IG+PL + P D DF I+E+G G+I +LT + RP + Sbjct: 119 LSVLQQAGQAYANPGNRNNEIGLPLAVIDAPEDADFAIYEMGAGKPGDIAYLTDIARPDV 178 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGI 244 +++ IA AHL + +A+ K I+ L GT +N DD+F + + A Sbjct: 179 SLVNNIAAAHLERMGDLLGVATTKGAIYAALPAGGTAVVNADDAFGAWFEQEVVRPAGTG 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + FG +A+ R + +E S + + G H +N L I Sbjct: 239 RQLLRFGLDASAEVTARDVQAGAEGSRFVLVTPQGEAAIELALPGRHNVRNALAAAAIGL 298 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + L P GR + L+D+SYNANP S+ AAI Sbjct: 299 ACGVSLAAIAAGLGQARPVAGRQVAHGLPGG---VVLVDDSYNANPGSVAAAIDA----L 351 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 VLGDM E+G + + H D ++ ++ G A Sbjct: 352 AASGDEAWLVLGDMRELGPEAATLHADAGLRARQAGLARLYALGELSAHAARAFGDEGR- 410 Query: 425 HYSETMDGLFLFIQ----------------SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ L + L V+VK S R++N LL + Sbjct: 411 -HFDSHQALAAALAADLAARAPADAAGAEGRRLR----VLVKGSRGSAMDRIVNALLAQ 464 >gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] Length = 427 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 95/437 (21%), Positives = 175/437 (40%), Gaps = 27/437 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 +IDSR++ + FFA G ++ A KGA V+V + +F V Sbjct: 18 NATIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPARD---IFYV 74 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 L L +LA R + +IA+TGS GKTTTKE++ L+ G+ NNHIG Sbjct: 75 PSTLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLNNHIG 134 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + + E+G +H EI L + +P IT AHL F G E + Sbjct: 135 VPLTLLSVRSHHNMAVIEMGANHQKEIEMLCEIAKPTYGYITNFGKAHLEGFGGFEGVIK 194 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E++ L L ++ A+ ++ + + Sbjct: 195 GKSEMYSYLRANSQTI----------LVNENDAIQVENTAGYSPVITFGKPDSDYLFEEV 244 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V L+ G + N+ + A+ + P R + Sbjct: 245 SNQNFVGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGISFREIKTAIENYVPTNMRSQ 304 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 TL+ ++YNANP+SM+ ++ ++ EG + ++GDM E+G S++ Sbjct: 305 ILEKNGK----TLVLDTYNANPSSMEESLKNFNRF----EGSKTIIIGDMLELGNESEAE 356 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + ++ V G + + + ++ L ++ + ++ ++ Sbjct: 357 HRRILDLAGSLAFDAVVTVGENFRRI------NPGSQSYKSAQELADALKLNPINSQNIL 410 Query: 449 VKSSNSCGFYRLINLLL 465 +K S ++++ ++ Sbjct: 411 LKGSRGIALEKILDFIV 427 >gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia AU 1054] gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia cenocepacia HI2424] gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia cenocepacia HI2424] Length = 468 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 109/474 (22%), Positives = 195/474 (41%), Gaps = 23/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ N +S DSR++ + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDAGVTFNRVSTDSRTVGAGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + AL LA R+R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + E+GM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + ++ +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVDAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 + + L F P +GR + + + G T++D++YNANP SM+AA Sbjct: 293 AATAAALGAGVALSAIRQGLEAFEPVKGRLQVKQASVGSLGGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACT 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGDTAR--HFDDVGALVSALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 423 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 118/433 (27%), Positives = 194/433 (44%), Gaps = 23/433 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ D+R FF ++G ++G++F+ A++KGA VV N + + Sbjct: 12 KGVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQA----IL 67 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L L +LA+ R IIA+TGS GKTTTKE++ L+ +T G++NNH+ Sbjct: 68 VEDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNFNNHL 127 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D I E+G +H GEI L + P IT AHL F E + Sbjct: 128 GVPLTLLRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYITNFGRAHLEGFGSFEGVI 187 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK+E++ L+K D+ ++ G YSF + + Sbjct: 188 QAKSELYNYLKKDNKRIFFCQDNEIQV----RLLNGYSNTYSFS---MEGNKKANLQLSL 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + V+L + + H IG + A N+ + I + + I + + P R Sbjct: 241 YKESLLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKEAIIHGIEGYIPTNNR- 299 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + ++ ++YNANP+SM AAI +I + I +LGDM E+G+ S + Sbjct: 300 --SQFVEKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANK---ILILGDMKELGDYSPA 354 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L ++LY V L G + + + T++ + ++ Sbjct: 355 EHQQLVNDIALYPWEAVLLVGENFWNTQTNFLK------FHTLEEVNAYLAQQHFVNTFF 408 Query: 448 VVKSSNSCGFYRL 460 +VK S S R+ Sbjct: 409 LVKGSRSMTMERI 421 >gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM 22836] Length = 429 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 124/436 (28%), Positives = 202/436 (46%), Gaps = 23/436 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R+ FFA+KG +++G+++ A+ +G VV+ + A+ + + V Sbjct: 16 ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPN----IILVK 71 Query: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D L L +LA R + K IIAITG+ GKTTTKE++ LS A G+ NNHIG Sbjct: 72 DSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLNNHIG 131 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL R+ + + I E+G SH+GEIRFL + P+ +IT + AH+ F E + Sbjct: 132 VPLTLLRIKKEHEIVIVEMGASHVGEIRFLAEMALPNYGLITNLGHAHIEGFGSFENVVK 191 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E++E + T + LL + Y ++ Sbjct: 192 AKGELYEFIRSTKD--GKIFIDYSNLLLREMSEGITSIYYGLEDDLFISGKVTSISPFL- 248 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +E + K +V + IG + N L + I L KA+ + P R + Sbjct: 249 --ALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASLICKAIEEYVPTNNRSQ 306 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N LI ++YNANP SM AA+ + + ++ +LGDM E+G + Sbjct: 307 LKKTEKNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDTDME 359 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H +A+ +S +N V G + +K PR + +D L +++ V+ ++ Sbjct: 360 HQKIADYISDHNFERVMFIGDNFSRVKTKYPR------FKNLDDLKEYLKKDPVEDSYIL 413 Query: 449 VKSSNSCGFYRLINLL 464 +K S + I++L Sbjct: 414 LKGSRGVQLEKCIDML 429 >gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella salivae DSM 15606] gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella salivae DSM 15606] Length = 446 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 116/438 (26%), Positives = 198/438 (45%), Gaps = 18/438 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR+ F A+KG +DG+ F A++KG +++ A + + VD Sbjct: 24 ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAEADND--RLILVD 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L ++A R + +I ITG+ GKTTTKE+++ L+ + G++NN +GV Sbjct: 82 DCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNNDVGV 141 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I L V P +IT + AHL F E + Sbjct: 142 PKTLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNVGRAHLLGFGSFEGVKRT 201 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ + + + + A+ + Y N ++ Sbjct: 202 KGELYDYLKAHDGLLFLNESNADLVEMARQREMNRIMTYGQSDDANVQGEVLDCAPFLRF 261 Query: 270 SWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 +W + + + ++ +V H IG + NML + I + ALS + P R Sbjct: 262 TWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVTPEQINHALSHYIPANNR 321 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + A N+ LI ++YNANP+SM AA+ ++ ++A+LGDM E+GE+S Sbjct: 322 SQLEVTAKNK----LIVDAYNANPSSMAAAVENFKLMNVE---HKMAILGDMRELGEVSA 374 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H L + L+ VWL G + A + + +D + I + + Sbjct: 375 LEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRK------FKNVDEVKAEIAAHCPENYY 428 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K SN + L LL Sbjct: 429 ILIKGSNGIKLFELPELL 446 >gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36] gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36] Length = 456 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 202/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L++L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSNLAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G ++S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] Length = 471 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 203/470 (43%), Gaps = 15/470 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + I + V G SIDSR++ E FFA+ G +DGH+F+ A++ G Sbjct: 3 LTLGQVADWIHAEGEFVSTDEVV-GYSIDSRTVGAGELFFAVMGERFDGHEFVKTALEAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDD----VLGALNKLAVAARLRSKATIIAITGSVGKT 120 A VV+ V S + V D VL AL KLA R +I +TGS GKT Sbjct: 62 AVAAVVSMRWVVSAEVDPCKLLRVPDGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE + L++ K G+ NNH GVPL L R+ + + E+GM+H GEI L Sbjct: 122 TTKECVAAVLAAKFKVLKSAGNLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAK 181 Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P AV++ +A HL F G+E IA AK E+ + L G FLN DD F Sbjct: 182 IAEPDWAVVSNVAAVHLEFFADGMEGIARAKKELVDALPAAGVAFLNADDVFVSTFGEGH 241 Query: 240 HALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + + + Q Q M +G H N L Sbjct: 242 EARMFGLSETADVRGVEVKNVGLEGMQFVVQVTAREGRVADKMRARIALLGEHNVYNALA 301 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + + AL P + RG+ LI++SYN+NP +++A + Sbjct: 302 AIAVGLESGMTLGECVFALDSVVPSDKRGEMIEWHG----ARLINDSYNSNPRALEAMVD 357 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L I GR I + G+M E+G+ + H ++ + V +L Sbjct: 358 ALMAI---EGGRHIVIAGEMLELGQDAGKLHAASGRQMAKRGVDVVVGVRGFAESLAGVA 414 Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + +T + +++++L +GDVV++K+S + + L+E+ Sbjct: 415 KMSGAEALFVKTPEEAGAWMKANLREGDVVLLKASRGVRLEKALASLVED 464 >gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio furnissii CIP 102972] gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio furnissii CIP 102972] Length = 453 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 211/472 (44%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + L + +G + +S D+RSIA F A+ G +D H+F A Sbjct: 1 MIRL-SLSQLTTVLDAQLVGDDTD--IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V + +++P V + AL +L + +AITGS GKT Sbjct: 58 VAAGAKALLVERAL-----DVNVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS+ + G++NN IGVPLTL R D+ + ELG +H+GEI + Sbjct: 113 TVKEMVASILSAKGQVLFTAGNFNNDIGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL T +N D L ++ Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGYTAVVNLDSQGGALWQS-VL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A +S + + + ++ + + V IG H N L Sbjct: 232 ADKSVKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ +GR TLID+SYNA+ +MKAA+ +L Sbjct: 292 ALAIEMGATLADIQHGLAHLSKVKGRVDVTEL---TDHITLIDDSYNASVPAMKAAVDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S R +LG+M E+GE S + H + E + + +V G + D Sbjct: 349 GGFSA----TRWLILGNMAELGEESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDV--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDG--DVVVVKSSNSCGFYRLINLLLEEF 468 H + + + +FI+ L V++VK +NS G +++ L E++ Sbjct: 402 -CHGRHFASHQDMIMFIEQHLEQQPDRTHVLIVKGANSAGMSKIVAALKEKY 452 >gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA] gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 3_1_40A] gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA] gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 3_1_40A] Length = 432 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 125/435 (28%), Positives = 200/435 (45%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ + L A++KG VV+ A+ G + VD Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL +LA R + II ITG+ GKTTTKE++ L + G+ NNHIGV Sbjct: 74 DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ LT +V P +IT + AHL F E + Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E++E L G + D L + G+ I + + + K C+ Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTA---ISQGLTRICYGMEGREGLYISGKLGACAPF 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E + +G+ EV H IG + +N L + + + +AL + P R + Sbjct: 251 LSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ LI ++YNANP SM AA+ ++ ++ +LGDM E+GE S H Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A+ L V L+G + + + + L ++ G +++ Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFKDVVALKESLERYKPKGYYILI 417 Query: 450 KSSNSCGFYRLINLL 464 K SNS +L +L Sbjct: 418 KGSNSMKLAQLQEIL 432 >gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM 17393] gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM 17393] Length = 432 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 119/437 (27%), Positives = 187/437 (42%), Gaps = 18/437 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++ DSR+ F A+KG +++G+ F A++ G+ +V+ A G Sbjct: 14 TSVTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVDEVEYAPAGDPH--YIL 71 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VD L L +LA R + II ITG+ GKTTTKE++ LS G+ NNHI Sbjct: 72 VDSCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLSPKYTILYTQGNLNNHI 131 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL R+ + D GI E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 132 GVPLTLLRLKAEHDLGIIEMGASHPGDIKELVDIAEPDYGIITNVGKAHLEGFGSFEGVI 191 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K E+++ L + + L ++ A G+ I + Sbjct: 192 KTKGELYDYLRERKDSTIFIHHDN---LYLRNIAWGLNQISYGSEDGLYINGHVTGNSPY 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + G+ EV IG + N L + I + AL + P+ R Sbjct: 249 LTFEWKAGKDGEHHEVKTQLIGEYNFANALAAVTIGHFFDVESGKIDTALKEYTPQNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + A N TLI ++YNANP SM+A+IS + + + +LGDM E+G+ Sbjct: 309 QLKQTADN----TLIIDAYNANPTSMQASISNFHNMEIDNK---MLILGDMRELGKDGPK 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + L+ V L G A + P + +Q + G + Sbjct: 362 EHQKIVDFLTECGFKDVMLVGEQFAAARHDFPT------YPDAPAVIEALQKNKPHGKTI 415 Query: 448 VVKSSNSCGFYRLINLL 464 ++K SN +I+ L Sbjct: 416 LIKGSNGIKLSTVIDYL 432 >gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanine-ligase murF [Candidatus Protochlamydia amoebophila UWE25] gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine-ligase murF [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 107/463 (23%), Positives = 202/463 (43%), Gaps = 22/463 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T + + + +G V G +DSR E F A++G H DGH ++ QK Sbjct: 3 IMTLKQIAKILNSSL--PEVEGVVKGFCVDSRLTKKNEVFVALRGEHVDGHAYLNEVKQK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + + + +F ++ L AL LA ++ ++A+TGS+GKTTTK Sbjct: 61 GALAAIVDQNYQGPV--FGMHLFRTENPLLALQMLAQKCLEKTS-RVVAVTGSIGKTTTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLV 182 E + L T A G+ N+ +G+PLT+ + + E+GM+ G++ L ++ Sbjct: 118 EFIKTLLEQRYVTAASQGNSNSQVGLPLTVLNHTTGTEDILVLEMGMTEPGQLSTLVNIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P ++V+TT A H F +++IA KAEIF + +++ + + Sbjct: 178 HPEVSVLTTAALVHACRFETLKDIALTKAEIFSHSHTRLGVVDREIEAYETIAQIGECKK 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + S + + + + +E + + + H N+L + + Sbjct: 238 ISFSTVSSRADYHLETVNEEVRLKTEGQSISLGKMCLPGKHNLH--------NLLAAIAV 289 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +A+ E R + + +++SYNA+ S+K+A+ L Sbjct: 290 ARYFELTWNEIKQAIPFLKLPERRLQFVQKEGVY----FLNDSYNASELSVKSALETL-- 343 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + G+G +IAVLG M E+G S H + E Y + ++ G L + + ++ Sbjct: 344 PNATGKGYKIAVLGSMMELGHFSDECHQRVGEFALNY-VDKMYCLGAECLPIVEVWKKAN 402 Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V L ++ +L DVV++K S S ++++ L Sbjct: 403 RPVELFMERSELISTLKKNLKPADVVLLKGSRSKELWKILEEL 445 >gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sputigena Capno] gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sputigena Capno] Length = 443 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 190/443 (42%), Gaps = 21/443 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+S D+R+IA +FA+KG ++G+ F A++KGA V++ S + Sbjct: 12 TGVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVIDEVAY----QTSDKMIL 67 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V DVL L +LA R K +I ITGS GKTTTKE++ LS A G+ NN+I Sbjct: 68 VSDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQQLNVVATQGNLNNNI 127 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + + D I E+G +H GEI FL ++ +P IT+I AHL F E + Sbjct: 128 GVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSFEGVI 187 Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYSFGKSKNADFQ 259 K E+++ TI N D+ E L A G+ ++ Q Sbjct: 188 QTKGELYDYLKAHQKTIIANADNPITEALLADYDNDYSFGVGKGVNVAVQCVGTQPVTIQ 247 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + + V ++G + + N + + +A+ Sbjct: 248 FEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTN-IAAAVAFGKFFKLSNEAIKR 306 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 + G T++ ++YNANP+SM AAI L +S + + +LGDM Sbjct: 307 GIEAYIPQNNRSQLMQWGSNTVLLDAYNANPSSMAAAIDNLLTMSDEKKK--VLILGDMF 364 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G + H + + L Y V+L G + + P+ ET + + Sbjct: 365 ELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQ------YETFEAFKEVFPT 418 Query: 440 SLVDGDVVVVKSSNSCGFYRLIN 462 + ++++K S RLI Sbjct: 419 LSFNNCLLLIKGSRGMALERLIQ 441 >gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae] gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] Length = 428 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 207/436 (47%), Gaps = 23/436 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 +SID+R I FFAIKG ++D + F A+ GA VV++ + + V Sbjct: 15 SLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYF----IDDRTILV 70 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 ++ L L +L+ R K I+A+TGS GKTTTKE++ + LS KT A IG+ NNHIG Sbjct: 71 NNSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLNNHIG 130 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLTL + + GI E+G +H EI FL + +P IT AHL F G++ + Sbjct: 131 VPLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGYITNFGKAHLEGFGGVQGVIE 190 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ L K + ++ ++FG + + K + Sbjct: 191 GKSEMYQYLLKNNKTVFVNLEDPIQI-----EKSTGIKNFTFG----VNKESADLKIKNI 241 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q+ V ++ + +V H IG + A N+ + I + +A+ + P R + Sbjct: 242 QANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVEDALIKEAIENYIPANNRSQ 301 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N+ +I ++YNANP+SM AI+ Q+ + I +LGDM E+G S Sbjct: 302 LLKKGSNE----IILDAYNANPSSMAVAITNFLQLENQNK---IMILGDMFELGNESHEE 354 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H + + LS N S +L G + + + ++ + ET D ++++ + ++ Sbjct: 355 HKAIVDSLSNQNKSKCYLIG---KSFYENKISNENIQFYETFDAFAAYLKTIEFKDNTIL 411 Query: 449 VKSSNSCGFYRLINLL 464 +K S R ++ + Sbjct: 412 IKGSRGMALERTLDYI 427 >gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium variabile DSM 44702] Length = 505 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 124/495 (25%), Positives = 194/495 (39%), Gaps = 32/495 (6%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T ++ G + G P V G + DSR + + A+ G DGHDF+ Sbjct: 1 MIEL-TAGEIADITGGTLVDGADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVG 59 Query: 59 HAVQKGAGLVVVNT---------DMVASIGSLSIPVFGVDD--------VLGALNKLAVA 101 A++ GA LV+ V +D+ V+ A+++LA Sbjct: 60 PALEAGAALVMAGRPTALPELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARH 119 Query: 102 ----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 ++ T+I +TGS GKT+TK++L S +T A GS NN IG P T+ + Sbjct: 120 STEVLVAENRLTVIGVTGSAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPYTVLKAG 179 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + E+ G I L + P I V+ + AHL F E IA AK E+ E L Sbjct: 180 RTTKYLVAEMSARGQGHIAHLARIAPPRIGVVLNVGTAHLGEFGSREGIAQAKGELVEAL 239 Query: 218 EKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 LN DD + ++ A + G AD++ + Sbjct: 240 PPAAEGGVAVLNADDDLVSGMAPRTAARVVYYSADQGADGTADYRASDITLDEVARASFL 299 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + V + + + + + A ++ R Sbjct: 300 LHHPEGEPVKVSLGVFGAHNVANALAAAAAAIECGLAPSEVASALTGYTAASANRMDVRT 359 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLA 393 T+I++SYNANP SM+A I L+ + G AVLG M E+GE + H + Sbjct: 360 RPDGLTVINDSYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAELGEDAVGEHTGIG 419 Query: 394 EVLSLYNISHVWLS--GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS-LVDGDVVVV 449 L+ I + + G + AL A I + +DG + + GDVV+V Sbjct: 420 AYLAERGIDRLIVVGHGVNQDALAAAGEDNGIRTRQVDDVDGAVNLLTGAPTHPGDVVLV 479 Query: 450 KSSNSCGFYRLINLL 464 K+S S G +R+ L Sbjct: 480 KASYSDGLWRVAERL 494 >gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax ebreus TPSY] gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax ebreus TPSY] Length = 482 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 116/472 (24%), Positives = 188/472 (39%), Gaps = 22/472 (4%) Query: 2 NPLWTFHDL-----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 +P+ T + IG + + D+R++A + F A+KG +D H F Sbjct: 8 SPMMTLQQAFDLLRARIPGARLIGEGA-TPLARVHTDTRTLAAGDLFVALKGERFDAHQF 66 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A A + +P V D L AL LA R + +IA+TGS Sbjct: 67 LSQAR----TAGAAAAIAHAGLADAGLPGIEVPDTLAALGALATGWRAQRDLPLIAVTGS 122 Query: 117 VGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTT +M+ A G++NN +GVPLTL R+ + + ELGM+H GE Sbjct: 123 NGKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGE 182 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + RP +A++ HL +E +A + L GT D+F L Sbjct: 183 IANLADIARPTVALVNNAQREHLEFMHTVEAVAHENGSVLSALPADGTAVFPAADAFTPL 242 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + G + +FG+ + + + + + + + G H Sbjct: 243 WRE---LAGTRHCLTFGE-AAGEVRCAAAQWGDGAWQVRIDTPNGAFDTRLAIAGRHNVT 298 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + + L+ F P GR + T++D+SYNANP S+ Sbjct: 299 NALAATACALAAGGPLASIARGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVH 358 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ + G R+ VLGDM E+G+ FH + + I ++ G Sbjct: 359 AAIEVLAALP----GPRLLVLGDMGEVGDQGSQFHAEAGAHARVRGIEQLFALGDLSAHA 414 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + + + M L + +L V+VK S +++ L Sbjct: 415 VQACGTAAR--HFKDMATLQAAVGQALPTVGSVLVKGSRFMKMEQVVQALQA 464 >gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus denitrificans ATCC 25259] Length = 464 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 136/467 (29%), Positives = 208/467 (44%), Gaps = 23/467 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + + G V ++ DSR++ P + F A++G +DG F A+Q+ Sbjct: 7 MMRLSEAAAMLGVPLPG--ADAEVVRVTTDSRTLRPGDLFVALRGERFDGGAFAAQALQQ 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV++ + VDD AL +LA A R R ++AITGS GKTT K Sbjct: 65 GAAGVVLDRAQAPDLAQA----LRVDDTRLALGRLAQAWRQRFAIPLVAITGSNGKTTVK 120 Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 EML L G+ NN IGVPL L R+ + + E+GM+H GEI +LT Sbjct: 121 EMLAAILRVEAGDAAAVLHTEGNLNNDIGVPLMLLRLRDHHQYAVLEMGMNHAGEIDYLT 180 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 L RP IA++ AH+ +E IA AK EIF GL G N DD L + + Sbjct: 181 RLARPDIAIVNNALTAHIGFLGSVENIARAKGEIFNGLTDAGIAVFNADDPHAGLWREAN 240 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +A ++ S + V L ++++ G H N L Sbjct: 241 RQRCVVDFGLV----HATSVRGDYRADEFGSALTVTLPNATLDIALQVPGEHNVMNALAA 296 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + + L+ F +GR + T+ID++YNANP S+KAA++V Sbjct: 297 VAGAFALDVSHRSVVAGLAGFGGVKGR---LQRKAALHGSTVIDDTYNANPDSVKAALAV 353 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+Q G++I VLGDM E+G+ + S H ++ + + G A A Sbjct: 354 LAQQP----GKKIFVLGDMGELGDDAASMHEEIGVAARAAGVGRLLALGDLSCATVAAFG 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E ++ L +++ L G VV+VK S R++ E Sbjct: 410 TG--AMHFERIEELLAELENELAPGTVVLVKGSRFMQMERVVKSFTE 454 >gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxidans DMS010] gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxydans DMS010] Length = 451 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 134/464 (28%), Positives = 209/464 (45%), Gaps = 19/464 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T + + + + +I V+G +D+R I + F A+KG H DGHD++ A Sbjct: 1 MGLNLTLNQVAEIVACDAIY--ADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA +V+ I ++P V DV A +A A + + KA ++AITGS GKT Sbjct: 59 REAGAAAALVSE-----IQDDALPQLVVADVRKAFAHIARAWQQQCKARVVAITGSNGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+T L + A G+ NN +GVPLTL+ + D DF + E+G +H GEI L + Sbjct: 114 SVKEMVTTMLKQVGSVTATQGNLNNELGVPLTLSCLNQDDDFAVIEMGTNHHGEIAELVN 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V P IAVI IA AHL+ F +E +A K I++GL G +N D + L + Sbjct: 174 IVVPDIAVINNIAAAHLAGFGSLEGVAKEKGAIYDGLAANGIAVVNADMPYQRLWQ---P 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G + SF AD + + S V + S G H N L + Sbjct: 231 LIGDRKTISFSLESEADIKADYIQLDPASSHFLVNIDDVSHHFNLPLPGMHNVNNALAAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L VD +K LS+ R + + + LID++YNANP S A++ L Sbjct: 291 AVAVALDIPVDAMVKGLSLMRSVPHRLQVRQGVND---SRLIDDTYNANPGSYLQALNTL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + +G VLGD E+G + + H + + +S + G + Sbjct: 348 TAF----QGEHWLVLGDFGELGIDNDNIHQQMGQQAREAGVSRLMTVGNSSKIAAHSF-- 401 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + E + L +Q L ++K S +L + L Sbjct: 402 GDDAVHYEDLGVLQHTLQQELSKDVTCLIKGSRFMQLDKLADQL 445 >gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1058] Length = 456 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 125/470 (26%), Positives = 200/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I P + F +KG DGHDFI A GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + P VDDVL A LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSDHPVAEG------PYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADYKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTCLEERKDSLSFDCNFLEKRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] Length = 427 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 106/442 (23%), Positives = 179/442 (40%), Gaps = 23/442 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++S+ + + F A+KG +DGHDFI A+++GA V+ +V S + Sbjct: 7 RRFVLNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSD-----RIVL 61 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + + L +LA S TII ITGS GKTTTKE+L L + + G+ N Sbjct: 62 VKNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEY 121 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PL++ + + E+ + G+I L + P +AV+ + AHL F E I Sbjct: 122 GLPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNVGSAHLEFFKSRENIM 181 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI + +K + +DD + G D+ + S Sbjct: 182 EAKLEIVKHSKKDSAVVTFFDDGDLRKKVPVLRENVLFFGTKGGDVVLEDWWYYENSTIS 241 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E M I N L + + L K + Sbjct: 242 E----------YRMFGSSFTIKLPGFWNRGQLLNLAASLCVMKVLGEKVDVLELSNLKAV 291 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +ID++YNA+P + + AI L + GR+ AV+G M E+GE S+ Sbjct: 292 PGRFNVKEVEGVRIIDDTYNASPEAFQMAIEALLKFP----GRKFAVVGAMKELGEESKK 347 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 FH L + L + +V+ + +K V +++ + + + + + GD V Sbjct: 348 FHEMLGKQLDALDGVYVFSTEPEAGWIK----TRKKVLETDSAEEIARDLYTRVRKGDTV 403 Query: 448 VVKSSNSCGFYRLINLLLEEFP 469 + K+S + R++ + E Sbjct: 404 LFKASRAVRIERVLEIFERELK 425 >gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 433 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 121/433 (27%), Positives = 191/433 (44%), Gaps = 21/433 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+Q+G VVV+ VD Sbjct: 16 VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDE--AEYCVQGDERYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL A LA R I+ ITG+ GKTTTKE+L L +G++NN IGV Sbjct: 74 NVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGEKYNVLYTLGNFNNDIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L LV P +A+IT + AHL F E + Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193 Query: 210 KA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K F K G +F++ ++ + + T + Sbjct: 194 KGELYDFMRQSKRGKVFVDANNPHLMGIAEGLDLVKYGTPARPDLFVSGKVVSAAPFLR- 252 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + G EV H +G + NML + + L D A +AL+ + P R Sbjct: 253 ---FAWQREGGAWNEVQTHLVGAYNVLNMLAAISVGLYLGVSADEANRALAHYVPSNNRS 309 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + A N+ LI ++YNANP SM A++ + ++A+LGDM E+G +S+S Sbjct: 310 QLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVP---HKMAILGDMLELGAVSES 362 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H +A+ LS + VWL G A + ++ + ++ + + Sbjct: 363 AHQAIADQLSQLALDEVWLVGPEFARTHCAFRK------FNDVEEVIAELKKHRPENHYI 416 Query: 448 VVKSSNSCGFYRL 460 +VK SN +L Sbjct: 417 LVKGSNGIHLDKL 429 >gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia multivorans ATCC 17616] gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia multivorans ATCC 17616] gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia multivorans ATCC 17616] Length = 468 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 110/472 (23%), Positives = 193/472 (40%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ +S DSR++ + F A+KG +D HDF+ Sbjct: 1 MT-MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + AL LA R R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAQAPAGIALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGAHARLATAGNLNNDVGLPLTLLRLAAAHRLAVIELGMNHRGETEI 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + + L F P +GR + R + T++D++YNANP SM+AA Sbjct: 293 AATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGEAAR--HFDDVGTLVDALLAAGYGADASVLVKGSRYMKMERVVDALTNQ 458 >gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK678] Length = 456 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYTALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides fluxus YIT 12057] gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides fluxus YIT 12057] Length = 433 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 120/435 (27%), Positives = 194/435 (44%), Gaps = 17/435 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG +++G+ F A++ G+ VV+ A G VD Sbjct: 16 VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTG--DAHYIIVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L L +LA R + II ITG+ GKTTTKE+++ LS G+ NN IGV Sbjct: 74 NCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLNNSIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + D + E+G SH G+I+ L + P +IT + AHL F E + Sbjct: 134 PLTLLRLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + L+ ++ L T S + + + Sbjct: 194 KGELYDYLRRRKEGSTIFIHYDNPYLREIAYGLNQITYGSEEELYVSGRVTGNSPYLT-- 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + +GK+ +V IG + N L + I + KAL+ + P+ R + Sbjct: 252 FEWKAGKEGKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKIDKALAEYTPQNNRSQL 311 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R A N TLI ++YNANP SM A+IS ++ ++ +LGDM E+G+ S H Sbjct: 312 KRTADN----TLIIDAYNANPTSMMASISNFCKMEAA---HKMLILGDMRELGKDSAEEH 364 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L + HV L G A + + P +Q + ++++ Sbjct: 365 QKIIDYLEECHFEHVMLVGELFAATRHSYPAYADAAAV------IAELQKNKPTERMILI 418 Query: 450 KSSNSCGFYRLINLL 464 K SN +I L Sbjct: 419 KGSNGIKLSSVIEYL 433 >gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio furnissii NCTC 11218] Length = 453 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 130/472 (27%), Positives = 211/472 (44%), Gaps = 24/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + L + +G + +S D+RSIA F A+ G +D H+F A Sbjct: 1 MIRL-SLSQLTTVLDAQLVGDDTD--IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++V + +++P V + AL +L + +AITGS GKT Sbjct: 58 VAAGAKALLVERAL-----DVNVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ LS+ + G++NN IGVPLTL R D+ + ELG +H+GEI + Sbjct: 113 TVKEMVASILSAKGQVLFTAGNFNNDIGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P +A++ +A AHL F I+ + AK EI++GL T +N D L ++ Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGNTAVVNLDSQGGALWQS-VL 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A +S + + + ++ + + V IG H N L Sbjct: 232 ADKSVKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAAS 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A + L+ +GR TLID+SYNA+ +MKAA+ +L Sbjct: 292 ALAIEMGATLADIQHGLAHLSKVKGRVDVTEL---TDHITLIDDSYNASVPAMKAAVDLL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S R +LG+M E+GE S + H + E + + +V G + D Sbjct: 349 GGFSA----TRWLILGNMAELGEESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDV--- 401 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDG--DVVVVKSSNSCGFYRLINLLLEEF 468 H + + + +FI+ L V++VK +NS G +++ L E++ Sbjct: 402 -CHGRHFASHQDMIMFIEQHLEQQPDRTHVLIVKGANSAGMSKIVAALKEKY 452 >gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus 5a2] gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus 5a2] Length = 433 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 116/435 (26%), Positives = 187/435 (42%), Gaps = 22/435 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S DSR FFA+KG DG+ F A+ KGA V++ V+ Sbjct: 21 VSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDNPRYYQEDE---RYLLVN 77 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + IIAITGS GKTTTKE++ LS YA G++NNHIGV Sbjct: 78 DTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGNFNNHIGV 137 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P++L + + + E+G +H+GEI L +V+P +IT I+ AHL F GI + Sbjct: 138 PISLLSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNISHAHLEGFGGINGVIKG 197 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+ + + L + + E Sbjct: 198 KSEL---------YTYLKQHGGVPFINSADSVLLNVANGFVNPIYYPQKGDYYYCELKEA 248 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + V +S V IG H N+ L I + + A+ ++P R + Sbjct: 249 NPYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMVNTAIQAYNPSNNRTQL 308 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N +++ ++YNANPAS++AA+ S + + + +L DM E+GE S +FH Sbjct: 309 IKKGTN----SILLDAYNANPASVQAALESFSFLKSMYK---VLILADMNELGEESLAFH 361 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + E + + + L G + A + Y + + L ++ + ++ Sbjct: 362 QAIIEKTAQQDYDAILLHGPVME---KACLYNPKAIYFKQISNLQEYLSNHKFSNTAFLL 418 Query: 450 KSSNSCGFYRLINLL 464 K S S L+N + Sbjct: 419 KGSRSYHLESLLNFI 433 >gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1057] Length = 456 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 125/470 (26%), Positives = 200/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I P + F +KG DGHDFI A GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + P VDDVL A LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSDHPVAEG------PYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADYKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTCLEERKDSLSFDCNFLEKRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 VHY + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454 >gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Synechococcus sp. WH 8109] gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Synechococcus sp. WH 8109] Length = 459 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 183/468 (39%), Gaps = 16/468 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M T LL A G G P V + DSR + + F + G +DGH F+ Sbjct: 1 MT--LTLRQLLAAW-GTPQGSSFEPDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLD 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + VV+ S + + VDD L A +LA+ R ++A+TGS G Sbjct: 58 KLTEHKVQAAVVSRSWTEPFPS-GLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTT+E++ AL+ + A + NN +GVPLT+ + E+GM GEI L Sbjct: 117 KTTTRELIRAALAPMGAIQASEANNNNDVGVPLTVLGATAADAALVIEMGMRGSGEIERL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P +AVIT I AH+ E IA+AK EI GL GT+ + D E A Sbjct: 177 SRCTEPDLAVITNIGTAHIGCLGSREAIAAAKCEITAGLHPKGTVVIPAGDPLLESALAA 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + + ++ Q + Sbjct: 237 VWSGRVLRVRLADDPVVESDLINADWIGADLVGDINGDQLLIDADRLPLQLEGRHNARNL 296 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + V GR +R + TL+DE+YN + A+ Sbjct: 297 LLAVAVADQLGVSRKQLQGMQVTVPGGRNRRLQQGG----LTLLDETYN----ASPEAVL 348 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416 ++ GRR AVLG M E+GE S H ++A + + L G A+ + Sbjct: 349 AALELLAAQPGRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAE 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ + + + + L GDV+++K+S RLI LL Sbjct: 409 VAAPLPHLQLVSNPEDAAVPLAAWLNSGDVLLLKASRGVALERLIPLL 456 >gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus equi ATCC 33707] gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus equi ATCC 33707] Length = 506 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 134/496 (27%), Positives = 200/496 (40%), Gaps = 34/496 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T + QA+ G P V+G + DSR I F A+ G DGHD Sbjct: 1 MIPM-TLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHAA 59 Query: 59 HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDD---VLGALNKLAVAARL 104 AV G +VV + G+L++ VL AL KLA A+ Sbjct: 60 GAVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHDRDGSGAAVLAALGKLARASVD 119 Query: 105 R----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R S T++ +TGS GKT+TK++L LS + A GS+NN +G P T R D Sbjct: 120 RLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADADT 179 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 F + E+ G I L + P I V+ + AHL F E IA K E+ L Sbjct: 180 RFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPSA 239 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279 + + L A + G S NAD + + + ++ + Sbjct: 240 ADG-GVAVLNADDPLVAAMADRTEARVVMVGLSGNADVRATDVRLDDQARASFTLTCAAG 298 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 ++ V G H N L + A +D AL P R R + Sbjct: 299 AVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSARRMEVRDRSDGV-- 356 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396 T++++SYNANP SM+AAI L ++ G G AVLG+M E+G S H + Sbjct: 357 TVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVEHDAIGRFA 416 Query: 397 SLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 +++ + L G V A+ + ++ L GD+V+VK Sbjct: 417 VRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASAIALLEQELRAGDLVLVK 476 Query: 451 SSNSCGFYRLINLLLE 466 +S S G + + + +L Sbjct: 477 ASQSIGLWEVADAVLA 492 >gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax benzoatilyticus JA2] gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax benzoatilyticus JA2] Length = 448 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 123/463 (26%), Positives = 191/463 (41%), Gaps = 23/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + G ++ + D+R++ P + F A++G +DGH+F+ A + GA Sbjct: 4 TLAQALPFVPGATLVGEGTTAFARVHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + +P V D L AL +LA R R ++A+TGS GKTT +M Sbjct: 64 VAAIAEHGLSDA-----LPGLQVPDALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQM 118 Query: 126 LTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + L + +A G+ NNHIGVPLTL + G+ ELGM+H GEI L + R Sbjct: 119 VAAILRAAHGDAAFATRGNLNNHIGVPLTLLGLEPAHAAGVVELGMNHPGEIAELAAIAR 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA++ H + +E +A + L G DD + L + + A Sbjct: 179 PTIALVNNAQREHQEFMATVEAVARENGQAIAMLPPDGVAVFPADDDYTPLWRELAGARR 238 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 T G + ++ +E+ + G H +N L Sbjct: 239 TITFALDGAADLTARATW----QGDRWRVEMATPAGPLVTTLAVAGRHNVKNALAAAACA 294 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L+ F P GR + R A G TL+D+SYNANP S AA++VL+ + Sbjct: 295 LAAGVAPAAIAAGLTAFQPVAGRSQAARLATAHGEITLVDDSYNANPDSALAAVAVLAAL 354 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 G R VLGDM E+GE FH ++ I VW +G + Sbjct: 355 P----GPRWLVLGDMGEVGERGPEFHAEVGAAARAAGIETVWTAGTLSRHVGAD------ 404 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + L + + V+VK S +++ L E Sbjct: 405 -RHFDNTPALVAALADAPQAAS-VLVKGSRFMRMEQVVRALKE 445 >gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135] gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135] Length = 430 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 120/436 (27%), Positives = 191/436 (43%), Gaps = 20/436 (4%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 NG++ DSR F A+KG ++G+ F ++ +G VV+ AS + I Sbjct: 11 TECNGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEPQYASPENPYI- 69 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V++ L L +LA R + ++ +TG+ GKTTTKE++ L G++N Sbjct: 70 -LLVENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQGNFN 128 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIGVPLTL R+ + + + E+G +H GEI+ L H+ P +IT + AHL F E Sbjct: 129 NHIGVPLTLLRLKPEHEVAVIEMGANHPGEIKTLVHIAEPDCGIITNVGKAHLEGFGSFE 188 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + K E+++ L + G + + L K ++ + G + Sbjct: 189 GVIRTKGELYDYLREKGNATIFIQNENPHLNKIAEGLNCVRYGQTSGLDVSGTVLSCSPF 248 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 G S EV H IG + N L + I + ALS + P+ Sbjct: 249 LHLG-----WTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFGVEDTQICHALSSYVPQN 303 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + N TLI ++YNANP SM AA+ Q+ ++A+LGDM E+GE Sbjct: 304 NRSQLVQTESN----TLIVDAYNANPTSMMAALVNFRQMEAE---HKVAILGDMKELGEG 356 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S+ H + + L+ V L G L + + E + + + + V Sbjct: 357 SREEHQKVVDFLNECQFERVILVGPEFAGLSASF------EHYENVKEVEAMLAAHPVQH 410 Query: 445 DVVVVKSSNSCGFYRL 460 V++K SNS L Sbjct: 411 CCVLIKGSNSMKLSEL 426 >gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase protein [Xanthomonas albilineans] Length = 501 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 118/501 (23%), Positives = 192/501 (38%), Gaps = 57/501 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + G ++ IS D+R +A + A++G +DGH F A +GA Sbjct: 6 LSMIAHWADADLHGD--DVAIDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGAS 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V + + +P V D AL ++A + + AITGS GKT+ K +L Sbjct: 64 ALLVERR----LPQIELPQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALL 119 Query: 127 TIALSSIKK-----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 L + YA G++NN IG+PL + P D D+ I+E+G G+I +LT + Sbjct: 120 LAILQYACRLDGGSVYANPGNHNNEIGLPLAVIAAPDDADYAIYEMGAGKPGDIAYLTDI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P ++++ IAPAHL + +A K I+ L GT +N DD+F + + A Sbjct: 180 APPRVSLVNNIAPAHLERMGSLLGVAQTKGAIYAALPADGTAVINIDDAFGLWFEQQLSA 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG A + + ++++ + E G H N L Sbjct: 240 ASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGRHNLLNALAAAA 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L L+ P GR + LID+SYNANP S+ AAI Sbjct: 300 LALALDVAPARIAAGLAQVQPVPGRQISHTLPGG---AVLIDDSYNANPGSLAAAIDA-- 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 G R VLGDM E+G +++ H ++ ++ G A + Sbjct: 355 --LAAIGGERWLVLGDMRELGAGAEALHASGGSRARAAGLTRLYALGPLSAHAAQAFGDN 412 Query: 422 IHVHYSETMDGLFLFIQSSLV-----------------------DGD------------- 445 V ++ L +Q L D Sbjct: 413 GRV--FDSHATLVEALQRDLAAVVAREKQDQKQETELMHDKTGVPSDGALPRVPGPGSRI 470 Query: 446 -VVVVKSSNSCGFYRLINLLL 465 ++VK S ++++ LL Sbjct: 471 PTLLVKGSRGSAMDKVVSALL 491 >gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus NCTC 2665] gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus NCTC 2665] gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 504 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 138/493 (27%), Positives = 202/493 (40%), Gaps = 34/493 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFIL 58 M L T + +A+ G P + ++ DSR + + A G DGHDFI Sbjct: 1 MIAL-TAAQIAEAVSGTLSATLDPATVLVHVTPDSREVTAEGTLYVAKPGERADGHDFID 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAIT 114 A+ GA V+ A G+ P V+D + A+ LA R S T+I IT Sbjct: 60 TALGAGAAAVLAERATHAPDGAA-HPAIIVEDAVLAMGALAREVVRRVREHSPTTVIGIT 118 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTK++L L++ T A +GSYN +GVPLT+ R +D F + E+G H+G Sbjct: 119 GSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRFLVVEMGADHVGN 178 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I +L +VRP I V+ + AH +F G+ IA K E+ E L G LN DD Sbjct: 179 IAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAG 238 Query: 235 LKAKSHALGIKTI----------------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + A++ A + G D + ++ + Sbjct: 239 MAARTAAPITWFTADERGVTRAAEDVAAGRASGLVAARDVRSDDQERPVFDLQVGTDEAA 298 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 V G H N+L D + L P R Sbjct: 299 VRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGP--ASRFRMERTDRADG 356 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+I+++YNANP SM+AA+ L+ + R AVLG+M E+G+ H + E + Sbjct: 357 VTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVR 416 Query: 399 YNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 NI+ + + G L H+ + F+ L GD+V+VKSSN Sbjct: 417 LNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNG 476 Query: 455 CGF----YRLINL 463 G RL Sbjct: 477 VGLAALGERLATA 489 >gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] Length = 909 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 115/441 (26%), Positives = 194/441 (43%), Gaps = 27/441 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR++ E F AIKG ++DGHDF+ + +V+ + F VD Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFLET-ID--CIGAIVSKP----NPKAKVRQFIVD 545 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146 D A+ +A A R + +IA+ GS GKTT KEM+ L S +A G+ NNH Sbjct: 546 DTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAYFATRGNLNNH 605 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGVP +L + + +FELGM+H GEI +L+ L +P IAV+T H +E + Sbjct: 606 IGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVVTNAQREHQEFMKSVEAV 665 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A +F+ L+ G + + + +FG++ + + Sbjct: 666 ARENGSVFQSLDADGVAIYPRSSPYSYIWDEQ---SRHCKSITFGEAGSVNAT--NISYD 720 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 SE S V ++ + + + +G H QN L + D L+ F +GR Sbjct: 721 SEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATTLSAGIDKKYIESGLAEFKAVKGR 780 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 +++ ++D++YNANP S+ AAI +L ++ R VLGDM E+G Sbjct: 781 LQKHILKDG---TVILDDTYNANPDSVIAAIDILKTLAT----PRTLVLGDMGEVGVDGV 833 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H ++ I ++ G ++ + + + D L F+ S L + Sbjct: 834 QMHEEIGTYARENGIDNLLTLGELTKFAQEKFGDN---THFNSHDELAKFLIS-LHSKSI 889 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 + +K S +++ L ++ Sbjct: 890 I-IKGSRFMKMEKVLEALTKD 909 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 167/449 (37%), Gaps = 38/449 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + F A KG DG +F+ A++ GA +++ ++ + L PV V ++ Sbjct: 21 DSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDIVV--LQTPVLVVKNLR 78 Query: 93 GALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS------YN 144 L +LA A + +IA+TG+ GKT+ ++ AL+SI A IG+ Sbjct: 79 QKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGTLGTILPSG 138 Query: 145 NHIGVPLTLARMPVDVDFG---------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 ++G LT + I + S +G + V+ IA T + Sbjct: 139 ENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIEQGRLDSVQIKIAGFTNLTLD 198 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL ++E AK +F IF D + + + + + YS + Sbjct: 199 HLDYHKSMQEYEEAKTSLFLRDGLECAIFNLDDMAGVRMYEKSKASRNL--GYSILSNSK 256 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A + + +QL +V+ G H N+L+ G++S L V+ ++ Sbjct: 257 AVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVLSHLNVSVEKIVE 316 Query: 316 ALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 ++ P GR + + + Y+ P ++ AI L + G+ Sbjct: 317 IIATIRPVPGRLKLVDIQPFSSSRLINLPHVYVDYSHTPDALANAIKALEVVKNIRGGKM 376 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHY 426 V G G + ++ ++++ + + + + + + Sbjct: 377 ACVFG----CGGDRDKTKRPVMAKVASECADDIYITSDNPRTENASDILNDILKGAKKYS 432 Query: 427 SETMDGLFLFIQSSLV--DGDVVVV--KS 451 +D + + + L D +++ K Sbjct: 433 FSHIDRAYTILHAILNASKNDTILIAGKG 461 >gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia hofstadii F0254] gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia hofstadii F0254] Length = 464 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 112/462 (24%), Positives = 190/462 (41%), Gaps = 31/462 (6%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + +N ISI+S+ + + F AI+G G++F+ A++KGA V ++ + Sbjct: 15 EISDLEINNISINSKELGKNDIFVAIRG----GNNFVNEALEKGA-FAVYDSKTLKIDEK 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + F V+D + L A R +I ITGS GKTT K+M+ LS K Sbjct: 70 YANRAFFVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTE 129 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+YNNHIG+P TL R D F I E+GMS GEI L + P I VIT I +HL Sbjct: 130 GNYNNHIGLPFTLLRAEEDDKFIILEMGMSGFGEIDLLGQIALPDINVITNIGESHLEFL 189 Query: 201 SGIEEIASAKAEIFEGLEK------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 E + AK EI ++ N E++KA + + Sbjct: 190 KTKENVFLAKTEIIPYIKNTLVINGDDDYLKNVKAENIEVVKALNLGSNEFREKTSDFYY 249 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 + + ++ + +G H N++M + + + Sbjct: 250 GDVHFNESGTDFFLKYFGKICQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDKIIS 309 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 +A+ R + G T I+++YNA+P SM+ ++ SQI + + +I V Sbjct: 310 EAVKNIGLTGMRF----QIIENGDTTYINDAYNASPMSMEKSLETFSQI--YNDRLKIMV 363 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-------------RS 421 LGDM E+GE H +L + ++L G + +L + + ++ Sbjct: 364 LGDMLELGENELELHSNLFNTIKNTKFDKLYLFGERMKSLFEKIKENVDNENLENENLKN 423 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + + + I+ + V++K+S +I Sbjct: 424 KEFGHFDQKEEIKEKIRQISGEK-AVLLKASRGMRLEEIIEK 464 >gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str. MIT 9313] gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9313] Length = 465 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 119/466 (25%), Positives = 201/466 (43%), Gaps = 13/466 (2%) Query: 7 FHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L++ H+ + V I DSR ++ F + G H++GH F+ A++ Sbjct: 5 LGQLVEFWGAPMHVHASDLDLDQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALK 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV + +P + V+D L A +L + R + ++A+TGS GKTTT Sbjct: 65 LEVQAAVVARKDHHPVPE-GLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ AL+ + + A G+ NN +GVPLTL + D + E+GM +GEI L+ Sbjct: 124 RELIRSALTPLGEVLASAGNNNNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCT 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +AVIT I AH+ IASAK EI L+ G I + D E + Sbjct: 184 QPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPRGVIVIPAGDLLLEDALERIWRG 243 Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + + + + + K ++ + M Sbjct: 244 RVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGNAYTLPLEGMHNAC 303 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L + + S+ + K L G FT++DE+YNA+P +++AA+ +L Sbjct: 304 NLMLALAVARELDVCKESLSNLKVDVPGGRSRRLKVGNFTVLDETYNASPEAVQAALELL 363 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GR AVLG M E+G+ S + H +AE + + + A A Sbjct: 364 AIQP----GRHFAVLGTMLELGDQSVALHRQVAERAVQVGLDGLVVVAAGAEAEAMATAA 419 Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ + +Q+ L GDVV++K+S +LI LL Sbjct: 420 GSLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465 >gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] Length = 496 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 113/502 (22%), Positives = 181/502 (36%), Gaps = 47/502 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L ++ + G + G + DSR +A + F A+ G DGHD+ Sbjct: 1 MITL-RLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAT 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVD--------------DV-------LGALNKL 98 A+ +GA V+ + +P V D L + KL Sbjct: 60 AMDQGAAGVLAARP-------VGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKL 112 Query: 99 AVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 A + T+I ITGS GKT+TK+++ L T A GS+NN IG P T R Sbjct: 113 ARHVVDKLSARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALR 172 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + + E+ +G I L + PHI V+ + AH+ F + IA AK E+ E Sbjct: 173 CTETTKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARAKGELVE 232 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV- 274 L G LN DD + + ++ A T++SF + S Sbjct: 233 ALPADGIAVLNADDDYVAAMADRTSA----TVWSFSTLHKPVRVAATDIRLDNLSRPTFT 288 Query: 275 ------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 Q + +V G H N L D T + L + Sbjct: 289 LIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAHRM 348 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 A N + N L+ R IAVLG M E+G+ + + Sbjct: 349 DVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDATAD 408 Query: 389 HIDLAEVLSLYNISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 H++L ++ I V + G + A + + + L GD Sbjct: 409 HVELMRTVAEQGIDLVVVVGTDENARAMINAAAAMGLRAIPTADTTQAATEVLKVLGRGD 468 Query: 446 VVVVKSSNSCGFYRLINLLLEE 467 V++VK+SN+ +++ ++ + Sbjct: 469 VILVKASNAYRLWQVAEAVVAQ 490 >gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 432 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 123/435 (28%), Positives = 193/435 (44%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+++G +V+ A+ G V+ Sbjct: 16 VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGGDE--RYILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +LA R + K +I +TG+ GKTTTKE+ LS G+ NNHIGV Sbjct: 74 DVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + D + E G +HLGEI+ L +V P +IT + AHL F E + Sbjct: 134 PKTLLELSPDHTIAVIETGANHLGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + + Y + + + Sbjct: 194 KGELYDYLRAKHGTV---FIDHDSEDLKRIAGGVHQICYGSPCDEVLSVEGEVLECAPFL 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G+ EV IG + QNML I +VD+ +AL+ + PK R + Sbjct: 251 KFRWRPAGGEWQEVQTGLIGAYNMQNMLAAATIGRTFGVEVDSINRALAAYEPKNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ L+ ++YNANP SM+AAI + R+ +LGDM E+GE S H Sbjct: 311 METDDNK----LLVDAYNANPTSMRAAIENFRDMKVER---RMVILGDMGELGESSWKAH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A++L HVWL G A + ++++ + ++ G +++ Sbjct: 364 QAIADLLVESGFEHVWLVGPKFKAARH------PFRTFDSVEQVKKALEIKKPKGYYILI 417 Query: 450 KSSNSCGFYRLINLL 464 K S+S Y L + L Sbjct: 418 KGSHSTRLYDLPDFL 432 >gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 433 Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats. Identities = 118/437 (27%), Positives = 193/437 (44%), Gaps = 21/437 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +S D+R+I P FFA+KG +++G+ F A+Q GA V+++ A G VD Sbjct: 16 VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDG----RYILVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +L KLA R +I +TG+ GKTTTKE+L LS KTYA G+ NNHIGV Sbjct: 72 NVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + + + E+G +HL EI FL + P +I+ + AHL F E + Sbjct: 132 PLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGLISNVGKAHLEGFGSFEGVKKT 191 Query: 210 KAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267 K E+++ L+ D+ + A I + ++G ++ D + K Sbjct: 192 KGELYDYLQNHNGTLFLQADNPHLNEMAA---TRKISEVVTYGFAETNDVIGKLLKADPL 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 Q + + + S V G + +N L + + + + + PK R Sbjct: 249 LQIEWKEKDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSAEQINTGIERYTPKNNRS 308 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 T+I + YNAN +SM AA+ + I + + +LGDM EMG+ S + Sbjct: 309 ----QVTKTEHNTIIADYYNANASSMAAALDNIEVIDASRK---VIILGDMFEMGDESDA 361 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + + G + + ET + + V + Sbjct: 362 EHEKVVQRAKSIGADRLIFVGKAFKK-----QAYLEAEFYETSEEAKQALIDRPVINSTI 416 Query: 448 VVKSSNSCGFYRLINLL 464 ++K+S F L+++L Sbjct: 417 LLKASRGMAFEHLMDVL 433 >gi|150004319|ref|YP_001299063.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides vulgatus ATCC 8482] gi|149932743|gb|ABR39441.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides vulgatus ATCC 8482] Length = 821 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 187/463 (40%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFG-DRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------IYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T SK + + + + + I + ++ +L + Sbjct: 236 LFTSREIAWSKKDNERPLFIESIQKGAHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S +R +L DM E G+ + + +AE++ + + G + I Sbjct: 356 SDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170] gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170] Length = 823 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 115/462 (24%), Positives = 201/462 (43%), Gaps = 11/462 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + +++ + IG Q ++ I DSRS+ + FFA+K DGH +I + Sbjct: 4 SIEEIVSVVGATRIGER-QASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYAR 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + V +VL AL +LA R + + +I ITGS GKT K Sbjct: 63 GVYNFVVAEVPEEMKNCTDVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSNGKTVVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS K+ SYN+ IGVPL++ M + GIFE G+S +GE+ L ++R Sbjct: 123 EWLYQLLSPDKRIIRSPRSYNSQIGVPLSVWMMDEHTELGIFEAGISEMGEMETLEPIIR 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T I AH NFS +++ K +F ++ I N D+ +KS Sbjct: 183 PTIGVLTNIGGAHQENFSSLQDKCMEKLLLF---KECDVIVYNGDNELIRDCVSKSLFTA 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +S K + K ++ + + ++ + G E I +N L L + Sbjct: 240 REIAWSM-KDPERPLFIEKIEKDAAGTTIKYRYLGFFKEFRIPYIDDASIENSLHCLAVA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + ++ P R + LI++SYN++ AS+ A+ +++ Sbjct: 299 LYLMVPTEVIAERMAHLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S RR +L D+ E G+ + + +AE++ + + G + A Sbjct: 356 SEDKARRRTLILSDILETGQPGKLLYRQVAELVHSRGVDRLIGVGEEISASSSRFDVKEK 415 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + T + + + +L D+V++K + + F + + L Sbjct: 416 QFFLTTEELMASGVLETLR-NDIVLIKGARAFHFDAVSDFLE 456 >gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium cellulovorans 743B] Length = 395 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 189/405 (46%), Gaps = 15/405 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A +G+ I P+ N +SID+R + + AIKG ++DG+DF++ A+ KGA Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 L +++ L+ V++ AL +LA R + +I +TGS GKT+TK+ Sbjct: 65 ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ ALS K + G++NN IG+PL + + D + E+GMS L EI+ L+ + RP Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + VIT I +H+ N E I AK EI K + +N+DD + + + L Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-- 242 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S KN D + + + + + G H N L+ + Sbjct: 243 -IKASISDDKNIDLKGESLVLKEDS----CEFKLNESKFYIPMPGKHNISNALLAIACAR 297 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + K R + T+I+++YNA+P SMKAAI V+ + Sbjct: 298 ELGVEDQLINKGFLNIEATSMRLDIEKNKG----ITIINDTYNASPDSMKAAIEVMKNLK 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 RIAV+G M E+GE S +H ++ ++ + G Sbjct: 354 GKR---RIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGE 395 >gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9303] gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 121/466 (25%), Positives = 203/466 (43%), Gaps = 13/466 (2%) Query: 7 FHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L++ H+ + V I DSR ++ F + G H++GH F+ A++ Sbjct: 5 LGQLIELWGAPMHVHASDLDLDQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALK 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A VV + +P + V+D L A +L + R + ++A+TGS GKTTT Sbjct: 65 LEAQAAVVARKDHHPVPE-GLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ AL+ + + A G+ NN +GVPLTL + D + E+GM +GEI L+ Sbjct: 124 RELIRSALTPLGEVLASAGNNNNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCT 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +AVIT I AH+ IASAK EI L+ G I + DS E + Sbjct: 184 QPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPRGVIVIPAGDSLLEDALERIWRG 243 Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + + + + + K ++ + M Sbjct: 244 RVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGKAYTLPLEGMHNAC 303 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L + + S+ + K L G FT++DE+YNA+P +++AA+ +L Sbjct: 304 NLMLALAVARELDVCNESLSNLKVDVPGGRSRRLKVGNFTVLDETYNASPEAVQAALELL 363 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GR AVLG M E+G+ S + H +AE + + + A A Sbjct: 364 AIQP----GRHFAVLGTMLELGDQSVALHRQVAERAVQIGLDGLVVVAAGAEAEAMATAA 419 Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ + +Q+ L GDVV++K+S +LI LL Sbjct: 420 ESLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465 >gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] Length = 430 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 117/448 (26%), Positives = 195/448 (43%), Gaps = 30/448 (6%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H++ + + + + + I DSR+I+ + F +KG DGH+FI A Sbjct: 3 LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ P V D L A LA + +IA+TGS GKTTTK Sbjct: 62 GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ LS+ KTY G+YNN IG+P T+ MP D + I E+G HLG+I L+ + + Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAK 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AHL F E+IA K +I +G+ G + D L A + Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 D +L+ + E+ + + ++ G + A N ++ + Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L + + AL R + + A ++ + YNANP +M+ + S I Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IA+L DM E+GE S H + + +I + G + L + Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLV 442 V++ + D L ++ +L Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLK 430 >gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 433 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 122/435 (28%), Positives = 193/435 (44%), Gaps = 25/435 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+Q+G VV+ VD Sbjct: 16 VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDE--AEFCPPNDERYILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL A LA R I+ ITG+ GKTTTKE+L L +G++NN IGV Sbjct: 74 DVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQKYNVLYTLGNFNNDIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L LV P +A+IT + AHL F E + Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193 Query: 210 KA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K F K G +F++ ++ + + ++G D + + Sbjct: 194 KGELYDFMRQSKRGKVFIDANNPHLMGIAE------GLDLVTYGTPARPDLFVSGKVVSA 247 Query: 268 EQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + G EV H +G + NML L + L + A +AL+ + P Sbjct: 248 APFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAEDANRALANYVPSNN 307 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + A N+ LI ++YNANP SM A++ + ++A+LGDM E+G +S Sbjct: 308 RSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVP---HKMAILGDMLELGAVS 360 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 QS H + + LS + VWL G A + ++ + ++ + Sbjct: 361 QSAHQAIVDQLSQLALDEVWLVGSEFARTSCAFRK------FNNVEEVIAELKKHRPENH 414 Query: 446 VVVVKSSNSCGFYRL 460 ++VK SN +L Sbjct: 415 YILVKGSNGIHLDKL 429 >gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Krokinobacter diaphorus 4H-3-7-5] gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Krokinobacter diaphorus 4H-3-7-5] Length = 424 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 114/439 (25%), Positives = 184/439 (41%), Gaps = 28/439 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 NG+ D+RS+ + + ++KG +++G+ F A++ GA L V++ + Sbjct: 14 NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYT-----VL 68 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 VDDVL L +LA R II +TGS GKTTTKE++ LS T A G+ NNHI Sbjct: 69 VDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKGNLNNHI 128 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL M + GI E+G +H GEI L + +P+ IT AHL F G E + Sbjct: 129 GVPLTLLSMDSTTEIGIVEMGANHQGEIAMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++ L + D ++ KA L + K Sbjct: 189 KGKSELYNYLRDNEEMAFINDTDKLQVEKATGITLQTFGSTESKYPISLVDGSESLKLSF 248 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + QL G + + + D +I + + Sbjct: 249 KNTTINSQLIGIYNYSN---------------IAVAIAMGTYFDVSIDQIKSGIEEYIPA 293 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + + +I ++YNANP SM AA+ L IA +G+M E+G S++ Sbjct: 294 NNRSQIIKKDSYRIILDAYNANPTSMAAALENLK----ATNTTTIAFIGNMFEVGVTSKA 349 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + ++ +I V+ G ++ E + S + +G V Sbjct: 350 EHQAMLDLAHHLSIDQVYAIGPDFCTSV----PQVNQEVYEDYNAFAKAYSSKIPNGATV 405 Query: 448 VVKSSNSCGFYRLINLLLE 466 ++K S R++NLL Sbjct: 406 LIKGSRGMKMERILNLLEN 424 >gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides salanitronis DSM 18170] gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides salanitronis DSM 18170] Length = 428 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 120/435 (27%), Positives = 189/435 (43%), Gaps = 22/435 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+KG ++G+ F A+ +G VV+ A S VD Sbjct: 16 VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGES----YILVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L L +LA R + K II ITG+ GKTTTKE+++ LS K G+ NNHIGV Sbjct: 72 DCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ L + P +IT + AHL F E + Sbjct: 132 PLTLLRLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNVGKAHLLGFGSFEGVIKT 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + G + + L ++ + G + E Sbjct: 192 KGELYDFLREKGNATIFIQNENSYLNAIAHGLHCVRYGQASGLFVSGKLLSCSPFLAFE- 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + V H IG + N L ++ + + +ALS + P Sbjct: 251 ----WMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDICEALSTYMP----QNN 302 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ G LI ++YNANP SM AA+ Q+ ++ +LGDM E+GE S H Sbjct: 303 RSQLVDTGRNKLIVDAYNANPTSMMAALENFRQVQAP---HKMVILGDMKELGEASLEEH 359 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L V L+G A+ A + + +D + ++ S G +++ Sbjct: 360 RKIVGFLDGCRFDRVMLAGPEFKAVASA------YEHFDNVDAVKEALEKSKPVGFTILI 413 Query: 450 KSSNSCGFYRLINLL 464 K SNS +L L Sbjct: 414 KGSNSMKLSQLPAYL 428 >gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] Length = 465 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 194/460 (42%), Gaps = 12/460 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D+ + G + +N + DSR++ P + FF I+G ++DGH+F A +G Sbjct: 3 LTLGDVQHCLTGMAEECREFAVINAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A VV + +++PV V D + AL +LA R + ++A+TG+ GKTT KE Sbjct: 63 AVAVVASR----MPEGVTVPVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKE 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML +S + NN IG+P+++ + + I ELG+S G++ L + P Sbjct: 119 MLAAVVSRKFTVAKNYRNLNNQIGLPVSMLKADSGQEVWIMELGISVKGDMEELAVIASP 178 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AVIT + P HL + +A AK+ + + + + GT ++ D EL A + G Sbjct: 179 DVAVITNVGPGHLEGLGDVAGVARAKSSLLKYMRQDGTAIVSKDYP--ELWAAATELTGS 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +S + + + ++ E G H A+N+ + Sbjct: 237 PVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQGEFTAPFCGDHYAENVACVAAAAN 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D + + R G +ID++YNANP SM +I ++ Sbjct: 297 ALGLPFDDIVAGVQAVEADCQRFCC----RPMGDALVIDDTYNANPLSMGRSIRTAVAMA 352 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + + VLGDM E+G+ +Q+ H +L ++ V+ G H + L + Sbjct: 353 --KDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAVFFKGAHCGDVLCGLDGGVDF 410 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 E + + VV+VK S S L Sbjct: 411 TAVEGPGEFLAAWRDMELADAVVLVKGSRSLKMEAFAAAL 450 >gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Exiguobacterium sibiricum 255-15] gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Exiguobacterium sibiricum 255-15] Length = 439 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 116/458 (25%), Positives = 206/458 (44%), Gaps = 27/458 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T + Q + + + + DSRSI + + I+G DGH FI AV + Sbjct: 1 MVTIAQIAQWLG---LEETDTRALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQ 57 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + + + I V V+D L AL +A + +IAITGS GKT+TK Sbjct: 58 GAIATLWKKGI--PLPEMDITVLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTSTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L +T+ G++N+ IG+PLT+ MP++ + + E+GM+ G+I L++L Sbjct: 116 DMIESVLKQSFRTHKTAGNFNSDIGMPLTILMMPIETEVAVLEMGMNGFGDIELLSNLAE 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA++T I +H G IA AK EI GL+ G +F++ D+ + A+ Sbjct: 176 PDIALVTNIGESHAEQVGGRTGIAQAKLEIRSGLKPNGHLFVDGDEPLLGEVPAERIGYH 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 Y + +E +++ + +G H +N + Sbjct: 236 ATNTY--------------VIEQAEATFIGTTFKFDGTTFSIPVLGKHQVRNAAYAIATA 281 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D L+ R L G +I+++YNA+P SM AAI ++ + Sbjct: 282 KALGLTDDVIQAGLNDVQLTPMRM----ERLMYGQTAIINDAYNASPTSMNAAIETIATL 337 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422 + VLGDM E+G+ + H + + ++ +SH L G + D + ++ Sbjct: 338 DGFTNK--VVVLGDMYELGQQERLLHASVGKKIA-LPVSHAILVGGKGRYIADGIADPTV 394 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 V +++T++ +Q L V+++K+S ++ Sbjct: 395 QVQFADTVEEAARLLQPLLGQQTVILLKASRGLALEQI 432 >gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter sp. TrichCH4B] gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter sp. TrichCH4B] Length = 463 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 172/443 (38%), Positives = 246/443 (55%), Gaps = 7/443 (1%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+GISID+R++AP + F A+K DGHDF+ A+ KGAG +V+ + + Sbjct: 20 DWAVDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQALAKGAGAALVSH--IPEGVAEGS 76 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ VDDV AL L A R R+KA ++A+TGSVGKT+TKEML L+ +T+A + SY Sbjct: 77 PLLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHAAVASY 136 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNH GVPLTLARMP D +F + ELGM+H GEI L+ RPH+A++TT+A HL F + Sbjct: 137 NNHWGVPLTLARMPADTEFAVIELGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDV 196 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 IA KA I EGLE G LN D +L+A + A GI+T + ++L+ Sbjct: 197 AGIAREKAAIIEGLEPGGVAVLNADLDETPVLRAVAEAAGIETRWF--GQSADAYRLKDA 254 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + + L G+ + +G H A N L V L D+D A+ L+ + P Sbjct: 255 ELDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLALGGDLDLALAGLAGWSPV 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GRG R+ L G T++D++YNANP SM AA++VL+ GRRIA L DM E+G Sbjct: 315 KGRGARFTVDLPSGSVTVLDDAYNANPTSMAAALTVLAATPA--TGRRIAYLADMKELGP 372 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H LA +L I + G + L DALP + + ET + + + Sbjct: 373 QEAALHAALAAHPALDRIDQIHCIGPLMKHLFDALPATKRGIWVETSAEAATALPTHISG 432 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 GD V+ K S S R+++ + E Sbjct: 433 GDAVLAKGSLSMAVARVVDAIRE 455 >gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA] gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl [Bacteroides sp. 3_1_40A] gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA] gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl [Bacteroides sp. 3_1_40A] Length = 821 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 186/463 (40%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFG-DRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------IYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T SK + + + + I + ++ +L + Sbjct: 236 LFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S +R +L DM E G+ + + +AE++ + + G + I Sbjct: 356 SDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 466 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 122/455 (26%), Positives = 209/455 (45%), Gaps = 31/455 (6%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---S 80 + + ++ S + F ++G DGH+FI A+ +GA +V D Sbjct: 27 ESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRKNFDSK 85 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138 V D L +L KLA R R +IA+TGS GKTTTKE+L L ++++ Sbjct: 86 ERAKAIPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEPVLVV 145 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 +YNN IG+P TL R+ + ELGM+H GEI LT + +P A+ITTI AH+ Sbjct: 146 TEKNYNNEIGLPFTLFRISDRTRIVVCELGMNHKGEIARLTQIAKPDFALITTIGTAHIE 205 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 + IA AK E+ EGL K G +F + ++LK+ G + I Sbjct: 206 FLGSQKNIAKAKVEVAEGLVKGGKLFYPDTGEYSKILKSTLRRHGSRLIL---------V 256 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + ++ L+ + E+ + GY + +N+ + + + + + +K +S Sbjct: 257 KPNHIFSVLQKRPSGFLLEYRDKEIEWNLPGYKLLENLAIAIACLETVGVPTEWILKGIS 316 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F + R + +++I+++YNAN SM +++ V Q++ VLGDM Sbjct: 317 TFKSVDKRLNLQKGK-----YSIINDTYNANYESMLSSLEVTDQLA--DGKEFYVVLGDM 369 Query: 379 CEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDG 432 E+G+ SQ FH +L + S N+ ++ G L +++ + H++ T +G Sbjct: 370 KELGKHSQKFHKELGKKCSEFQNLKGLFTFGTDSLWIREEFVKRTTFPRFSEHFAGTEEG 429 Query: 433 LFLFIQSSLV---DGDVVVVKSSNSCGFYRLINLL 464 L ++ G +V+ K+S R ++ L Sbjct: 430 LVKLVRKFSQTVPKGSIVLAKASRGIQLERFVDSL 464 >gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] Length = 478 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 99/461 (21%), Positives = 182/461 (39%), Gaps = 11/461 (2%) Query: 5 WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +++ +A+ G +G + DSR +AP + F I+G +DGHDF V++ Sbjct: 3 LTPNEMREALGAGAILGAQGDATFASVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQ 62 Query: 64 GAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +++ D S + + V D + AL +LA R+RSKA ++ +TG+ GKTT Sbjct: 63 GARVLIAERDPFNGECPSADVTIMVVGDSVKALGRLANLHRMRSKARVVGVTGTAGKTTV 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE+L L T + NN IG+PL++ + F + E G+S ++ L ++ Sbjct: 123 KELLAQVLGVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVL 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I ++ + H++ +A K+ + L + GT + D +A+S Sbjct: 183 RPDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHLAEGGTGLVCADYDDLVR-EARSVCR 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ + G+ + S V+ + + + + Sbjct: 241 RLQFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENV 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQGFFTLIDESYNANPASMKAAISVL 360 ++ A + + + G F ID++YNANP S + + Sbjct: 301 AAVAAAAHLCGLSGEEIAAGLAEAVLPRQRFACATVGGFVCIDDTYNANPLSSARMVEAV 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK---DA 417 ++++ G + VLG+M E+GE + H L L+ V+ G + A+ Sbjct: 361 TEMAA--GGPLVFVLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGLRL 418 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + S + V+ K S Sbjct: 419 GGYGGLFSAVDDTASFVDRFASLGLASAHVLFKGSRGNRLE 459 >gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510] gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510] Length = 821 Score = 210 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFG-DRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------IYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T SK + + + + I + ++ +L + Sbjct: 236 LFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S E +R +L DM E G+ + + +AE++ + + G + I Sbjct: 356 SDDKEKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella kingae ATCC 23330] Length = 454 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 130/462 (28%), Positives = 208/462 (45%), Gaps = 24/462 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + A+ +N I DSR + F A+ G ++D HDF+ Sbjct: 1 MKTL-DLNFICTALN--LPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFVADV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA L +V+ D + VDD L AL KLA A R + ITGS GKT Sbjct: 58 LAKGA-LALVSRDDFVGVSG----CLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEMLT L A G++NNHIG+PLTL + + + E+GM+H GE+ Sbjct: 113 TVKEMLTTVLREKFGADAVLATAGNFNNHIGLPLTLLNLRESHRYAVIEMGMNHFGELAV 172 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P++A++ AH+ F+G+++IA AK+EI++G+++ G L DD+ + + Sbjct: 173 LTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQ 232 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A LG++T +FG D K S ++ + + + G H N Sbjct: 233 AACKDLGLQT-QTFG-FAQGDIHAENVKLQPLVSEFDLVQGSERVHITLPVAGKHNVSNA 290 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + L+ F +GR + T++D++YNANP SMKAA Sbjct: 291 CAAATLALAGGVKFTEIARGLANFANIKGR---LQVKHGIKNSTILDDTYNANPDSMKAA 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ + V+GDM E+GE + H ++ I + G + + Sbjct: 348 LDVLAKMPA----PHVFVMGDMGELGENEAPKMHEEIGIYAKNLGIELAYFVGENSVQAA 403 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + + D L L + L + V+VK S Sbjct: 404 EKF--GADGLWFVDKDPLILSLTHDLPENASVLVKGSRFMKM 443 >gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK355] Length = 454 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 201/469 (42%), Gaps = 30/469 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL A +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + G + A N ++ Sbjct: 236 --------FGPDTDIFLTRLEERKDSLSFGCNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + A ++ + YNANP +M+ + S I Sbjct: 288 EGVSETAIAQAFSELELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSTIPA 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NSGGRKLAVLADMKELGADSKSMHGSMITSLNPEILTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 VHY + + L ++ SL D +++K SNS +L+ L Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVRESLTSADQILLKGSNSMNLAKLVEDLE 453 >gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] Length = 457 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 191/465 (41%), Gaps = 16/465 (3%) Query: 5 WTFHDLLQAIQ--GHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 ++ ++ + + ISIDSR++ + F AIKG ++DGH F+ + Sbjct: 3 FSISEINNVLGDIKNLSEGKKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG VV+ + + + P + V+D A KLA+ R + I+AITGSVGKTT Sbjct: 63 NKGVKSVVI-KKGMQKLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTT 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ L+ + + ++NN IGV LT+ ++ + E+GM LG+I L+ Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILAADIEDKVLVLEMGMRGLGQIENLSKY 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAVIT I AH+ E I AK EI + L G + + +D F E + Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKENITHAKCEISKFLNPEGVVIIPANDPFLEKTLKEFWK 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + + + + + + + G+H A N L Sbjct: 242 GRVIKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFEISFEGFHNASNFLFAYA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L I S L T+ DESYNA+P S+KA I L Sbjct: 302 VAKELG------IDFASSNKFDFVSLDGRNKILKSVKTTIYDESYNASPESVKACIKNL- 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419 + + G M E+G+ S+ +H ++ +++ +I + + L Sbjct: 355 ---LEKPRNKFFIFGSMQELGKESEKYHKEIFNLINNSDIKKCLFICEKENEKNYTNFLK 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + I S GD ++VK S ++I L+ Sbjct: 412 DKKKFLVLNNIKDVPQEINKSTKKGDSILVKGSRFWQLDKIIELI 456 >gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis HTCC2503] gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis HTCC2503] Length = 478 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 177/476 (37%), Positives = 256/476 (53%), Gaps = 12/476 (2%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53 M PLWT +++ A G + V G+S D+RS+A + F A+ G DG Sbjct: 1 MTDAPLWTVREIIAATGAALRGAGEGETLGERPVYGLSFDTRSLAKGDLFIALSGAR-DG 59 Query: 54 HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 HDF A KGA ++ + S ++P VDD L AL LA AAR R ++A+ Sbjct: 60 HDFAQAAADKGAAAALLTH--RPADLSEALPGLMVDDPLRALEDLARAARQRCFGALVAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTTKEML ALS + + +A S+NNHIGVP++LA +P FG+FE+GM+H G Sbjct: 118 TGSVGKTTTKEMLRAALSPLGEVHAAAKSFNNHIGVPISLASLPQQAAFGVFEIGMNHAG 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI L LVRPH+A+IT++A HL NFS ++ IA AKAEI G+ + G L D+ ++E Sbjct: 178 EITPLVDLVRPHVAIITSVAAVHLENFSSVDGIADAKAEILSGIRRGGAAVLPSDNPYYE 237 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYH 291 L +++ G++ I FG A + S E+ + G+ + G H Sbjct: 238 RLVSRARECGVERIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGERHVLELGVPGTH 297 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + L D+++ I+ L+ F GRG R+ + ++DESYNANP Sbjct: 298 QVSNALAVIAAGAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNANPT 357 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM +A++ L + P GRR+AVLG+M E+G S + H LA + + VWL+G + Sbjct: 358 SMASALAQLGETEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIEDAGTARVWLAGSGM 417 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L+DALP ++ L + SL GDVV+ K SN+ G L+ L + Sbjct: 418 APLRDALPADRVAEWAPKAPDLLSNLVDSLEQGDVVLFKGSNAAGIGALLEAFLAK 473 >gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis DSM 43247] gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis DSM 43247] Length = 436 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 131/461 (28%), Positives = 199/461 (43%), Gaps = 27/461 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ + + G +G VNG +IDSRS++ + F I DGHDFI A+ GA Sbjct: 2 ASEIAEVVGGQLVGD--DVAVNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAP 58 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + V + VDD AL L AAR R ++ +TGSVGKT+TK++L Sbjct: 59 AYLTSAGAVDGAAGAA---IIVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLL 115 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L++ +T A S+NN +G+PLTL P D + + E+G +G I L + +P + Sbjct: 116 AGLLATTFRTAASEKSFNNELGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIGKPTV 175 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT + HL F IE +A AK E+ E L G LN D + ++ A Sbjct: 176 GIITRVEGVHLELFGNIEAVARAKGELVEALPDDGIAVLNADHKHVAAMADRTSA----R 231 Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG + +D E ++ + ++ G H N L + Sbjct: 232 VITFGLTPESDVHASAVVIDDELRASFRLHSPWGETDIRLAARGEHQVPNALAAVAAAGG 291 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L ++ + L G R ++ T+++++YNANP SM AA+ L + Sbjct: 292 LGVPLEKFAEGL---LGAALSGLRMELVTSERGVTILNDAYNANPTSMSAALQSL---AA 345 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 GRRIAVLG M E+G S H +A I V G V Sbjct: 346 LAAGRRIAVLGTMAELGHDSAWQHEAIASQARELGI-EVIAVGEPTY--------GADVR 396 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + S L GD V+VK S R+ LL Sbjct: 397 HVADVAAASAEL-SDLGAGDAVLVKGSRVAELERVAQALLN 436 >gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas elongata DSM 2581] gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas elongata DSM 2581] Length = 455 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 129/469 (27%), Positives = 197/469 (42%), Gaps = 23/469 (4%) Query: 1 MNP--LWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M+ L + + +A+ P V I+ D+R + P F A+ G +D HDF Sbjct: 1 MSAVGLDSLGAVARALG----ESPPDTEVALTSITTDTRRLGPGALFVALVGERFDAHDF 56 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 I A + GA +V +P V D AL L A RL ++A+TG+ Sbjct: 57 IAQAREAGAAAALVERRQDDP-----LPQLEVADTRLALGLLGRARRLAWGGPLVAVTGN 111 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTT K+ML LS T A G+ NN G P+TL + + + ELG +HLGEI Sbjct: 112 SGKTTVKQMLATILSRSGATLATRGNLNNDFGAPMTLLELDGEHRRAVVELGANHLGEIA 171 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + L P +AVIT + AH+ F G+ IA AK EI GL + G LN DD +F Sbjct: 172 WTASLAMPDVAVITNVTGAHVGEFGGMGRIAQAKGEILGGLSRDGVAVLNRDDRYFRFWA 231 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 +++ + + + + L + ++ + V +G H N Sbjct: 232 SQAGSREVLDFGLEDEGRLRAETLVCDEFGR-YAFTLSFDGRELGRVQLALMGRHNVANA 290 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L AD + L P GR + + L+D++YNANP ++KAA Sbjct: 291 LAAAAAALALRADPADVLAGLEEVEPVAGRLGVF---AGRNGARLLDDTYNANPGAVKAA 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L+ + R +LG M E+GE S +H ++ I + G Sbjct: 348 LETLATLPA----PRWCLLGAMGELGEASAHWHAEVGHHARTLGIDFLGTLGEAARPASR 403 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 A ++ + + L + L G V+VK S S G ++ L Sbjct: 404 AFGEG--GYHFDDREALTRHVLHHLPPGASVLVKGSRSAGMEHVVTALR 450 >gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 497 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 127/504 (25%), Positives = 203/504 (40%), Gaps = 54/504 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYVALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V+ + +LS+P V++ AL ++A + +IA+TGS GKT Sbjct: 58 VAQGASGLLVDR----LLPALSVPQVLVENTELALARIAAGMQRDRATRVIALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D D I+E+G G+I Sbjct: 114 SVKALLLSILEEAGRVDGTTVYANPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K+ I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVARTKSAIYAALPADGVAVINADDAFGAWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + HA + + +G +AD R + + + ++ G H Sbjct: 234 EQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTPQGEAQIALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ P GR + + LID+SYNANP S+ Sbjct: 294 LNALAAAGLALGAGIALPIIAAGLAQARPVAGRQIAHTLSSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G ++ H + ++ G A Sbjct: 351 DAAIDTLA----AAPGAGWLVLGDMRELGPEGKALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--------------------------- 446 A V T L +Q+ L V Sbjct: 407 AAQAFGDGGRV--FATHAALVAALQADLAQVAVSPTQTQESSSMHEHTGAAAQTAATTAQ 464 Query: 447 ----VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 VPPTLLVKGSRGSAMDRIVAALLA 488 >gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase [Paludibacter propionicigenes WB4] gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paludibacter propionicigenes WB4] Length = 434 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 181/435 (41%), Gaps = 13/435 (2%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR FFA+KG ++D + F L A++ G VV+ A + V+ Sbjct: 13 ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYA----IDERFILVE 68 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL +L +LA R + +I ITG+ GKTTTKE++ L G+ NNHIGV Sbjct: 69 NVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQGNLNNHIGV 128 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL ++ + + + E+G +H EI+ L + P +IT + AHL F E + Sbjct: 129 PLTLLQLKPEHEIAVIEMGANHPEEIKALAEIAEPDYGIITNVGMAHLEGFGSFEGVKKT 188 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E++E + K G ++ L A + S + + R ++ Sbjct: 189 KRELYEYIYKAGKAIFINKNNEHLLKMAVDSGFVVNNENVISYSLDKNSSSRIKAVVTDC 248 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 S + + + + L+ K Sbjct: 249 SPFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEYFGLNKEELTAGLEKYNPQNN 308 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 LI ++YNANP SMKAAI +Q++ G+ +LGDM E+GE S + H Sbjct: 309 RSQLTITENNKLIIDTYNANPTSMKAAILNFAQMNVEGK---TLILGDMLELGEQSSAEH 365 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + ++L ++ V L G + + + + + L +I++ + V++ Sbjct: 366 QGIIDLLKQNKLADVLLVGNNFRST------NNPYTCFDEVTELINYIKNKPICNKYVLI 419 Query: 450 KSSNSCGFYRLINLL 464 K S +++ LL Sbjct: 420 KGSRGIKLEKVVPLL 434 >gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] Length = 461 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 30/469 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T + ++ + + + +DSR FFA+KG DG ++ +KG Sbjct: 12 FTASSIAPLLKADCLN-PNGKRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKG 70 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTT 122 A VVV ++ + PV +DVL +L++LA R I ITGS GK+TT Sbjct: 71 AAAVVVPKSRAAEALARVRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTT 130 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L + + T G+ N+ G+PL++ + +G+FE+G+ H+GE+ + ++ Sbjct: 131 KEALARITAVLGSTAKTPGNLNSEYGLPLSIFGLDETSRYGVFEMGIDHVGEMDRMVGML 190 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P IA++T + +HL E IA K GLE + + A+S Sbjct: 191 KPSIALLTNVGISHLEKMGSQEIIAEQKARIFHPGLEAGFVSSSCKHLDLIQTIAARSLV 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K + QL + +G H+ ++++ + Sbjct: 251 R----------------YDAKEISAVDLGLDGWQLTYEGHTFTVKSVGRHLLEDVVGAIK 294 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L A+ +AL F P R +++ T+ID+SYNA+ S + ++ LS Sbjct: 295 VGRYLGANAGDIAEALEGFEP-----MHGRSFVHRSDVTIIDDSYNASLDSTNSILTYLS 349 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK---DAL 418 +S G + VLG M E+G+LS+ H +A ++ + + +L G + L Sbjct: 350 GLSWK--GSKKVVLGPMKELGKLSRQAHRMVARTVAASSFNQTYLFGSEMEEASLELKKL 407 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V Y++ + L +Q L GD+ ++K+S S RLI + Sbjct: 408 GYRGQVKYTKDFEELESMVQKQLKGGDLFLLKASRSVAMERLIPSIQRR 456 >gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11] gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11] gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11] Length = 607 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 206/442 (46%), Gaps = 35/442 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTNIKDKR 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + + LA R + +I ITGS GKTTTK+++ LS+ KT G+YN Sbjct: 248 VVKVTDTIATMQNLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D+ +L K G ++N D+++ ++ Sbjct: 368 NVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNK-----------VGFNENNDYKIENYE 416 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ S + + E +G H N + + + + + K L Sbjct: 417 FSNKGSKFVLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 ++HID+ L I ++L G + D ++ Y T +G+ +++ Sbjct: 527 EINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586 Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462 ++ V+++K+S +I Sbjct: 587 KMEK-VILLKASRGTALEDIIK 607 >gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM 10411] gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM 10411] Length = 429 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 119/459 (25%), Positives = 186/459 (40%), Gaps = 37/459 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +++ ++ SI + + G SIDSR+I E F IKG +DG DF AV+K Sbjct: 5 LDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKSKT 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 +V + P V++ LGAL +LA +S A +AI GSVGKTTTKE++ Sbjct: 65 FAIVEKK-------VDCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTTKELV 117 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + + NN IGV TL R D DF + E+G+++ GE+ + P Sbjct: 118 ADFLSCRYSVCRSLENENNIIGVCKTLLR-VEDEDFCVVEVGINNPGEMEEIAAFFEPDN 176 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 + + H+ NF I+ I K++I ++ E+LK Sbjct: 177 VLFLNVTSTHIGNFENIDAIFKEKSKI------INKSSRLVYNADDEILKEAFEG----K 226 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 SFG D + E K ++ +L + Sbjct: 227 ENSFGFCFFGDCEF----------RAENNNNVKVEDITLKKPFGLNPYTVLSGFVAAFVF 276 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D + K + L I + YNAN SM AI L+++ Sbjct: 277 GGFKDETCFNDKLKAFKPVGYRMRPEILEDK--LFILDCYNANVNSMMHAIDELAKLK-- 332 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 GR++A+LGDM E+G S+ FH D+ L+ +I + G + DA +Y Sbjct: 333 --GRKLAILGDMLELGSFSERFHRDVGLYLNGKDID-LLAVGGDAFFIFDAFNGKK--YY 387 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +T ++ L D D+ ++K+S F + L Sbjct: 388 CKTKPEAVELLKDKLTDYDIFLLKASRGMRFEDIFTRLK 426 >gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] Length = 473 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 110/468 (23%), Positives = 188/468 (40%), Gaps = 22/468 (4%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +L++ + G + DSR + + F A+ G DGH ++L A + GA Sbjct: 24 DELVE-VHGDPANEDASWI--RVVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFC 80 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 +VV L++P V++ A +A A R R + A+ GS GKTTT +M+ Sbjct: 81 LVVEH----VETGLNVPQLVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMK 136 Query: 128 IALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L++ +A G++NN +GVP TL + + E GM+H GE+ L +RP Sbjct: 137 AILAAHWGVQNIHATEGNFNNDVGVPHTLLGLHCGCRAAVVEAGMNHRGEMARLADWIRP 196 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + ++T H + + E A + L G DD ++ + + A G+ Sbjct: 197 TVVLMTNAQREHQAYLETVAEAAFENGLLIAALPNDGVAVYPADDPCADVWASYALARGV 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T+ A + + + V H A Sbjct: 257 RTLTYATAEGVAADVRGELVPGKGLRLLAYGIDRVIGLQVQGAHNIHNAVGAAAAALAQQ 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 I + + A + R + FTLID++YN NP S A+I++L++ Sbjct: 317 IDVDAIAEGLAAFKALPGRGARM------ASPAGFTLIDDAYNCNPDSAIASIAMLAEEK 370 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIH 423 P I + GDM E+G ++ +H ++ I + W +G +A + Sbjct: 371 PAR----IFLFGDMGELGRDAELWHAEVGGAAKTLGIDYFWAAGPLSKHAAEAFGIDGVR 426 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + D L + + G V VK+S+S GF +++ L FPA Sbjct: 427 GRWFADRDELIAHLPELPLKGATVAVKASHSSGFGKVVETLKH-FPAF 473 >gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136] gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136] Length = 466 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 122/435 (28%), Positives = 191/435 (43%), Gaps = 23/435 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR+ F A+KG ++G+ F A+++G V++ A G+ VD Sbjct: 55 VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGT-----ILVD 109 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L AL +LA R + K +I ITG+ GKTTTKE+++ LS T G++NNHIGV Sbjct: 110 NCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNNHIGV 169 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + + + E+G +H GEI+ L H+ P +IT + AHL F E + Sbjct: 170 PLTLLRLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNVGKAHLQGFGSFEGVIRT 229 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L G + + L ++ + G + + Sbjct: 230 KGELYDFLRAKGGATIFIQNENPYLNGIAEGLTCVRYGQTAGLYVSGELISCSPFL---- 285 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 +G S EV H IG + NML I D AL+ + P R + Sbjct: 286 -SFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDDISSALASYLPHNNRSQL 344 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 A N+ LI ++YNANP SM + L ++ +LGDM E+GE S+ H Sbjct: 345 KETADNK----LIVDAYNANPTSMM---AALKNFRQIEAPHKMVILGDMKELGEASREEH 397 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + L V L G A + + +D + I+ G +++ Sbjct: 398 QKVVDYLKECGFDRVVLVGPEFAAA------THSYQTFQHVDEVLADIRMHKPQGYYILI 451 Query: 450 KSSNSCGFYRLINLL 464 K SNS L+ L Sbjct: 452 KGSNSMKLSLLLEYL 466 >gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855] gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855] Length = 821 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 185/463 (39%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRNFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SK + + + + I + ++ +L + Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S +R +L DM E G+ S+ + +AE++ + + G + I Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056] gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056] Length = 828 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 112/476 (23%), Positives = 205/476 (43%), Gaps = 21/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T D+ + I IG P ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YTIEDIARIIGARRIGDTP-AAIDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIR 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSI-----PVFGVDDVLGALNKLAVAARLRSKATIIAI 113 +G VV+ + + + + + + V + L AL KLA R R + +I I Sbjct: 58 DLYTRGVRNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGI 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKT KE L LS + SYN+ IGVPL++ +M + I E G+S G Sbjct: 118 TGSNGKTIVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNGQTELAILEAGISEPG 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E+R L ++++P I ++T I AH NF ++E K +F+ + + N DD F Sbjct: 178 EMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEFIN 234 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 KS + +S K + K ++ + + + + I Sbjct: 235 NCVGKSMLSAREIAWSR-KDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPFIDDASI 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L L L + + ++ P R + LI++SYN++ S+ Sbjct: 294 ENSLNCLAACLYLMLPAEQITERMAKLEPI---AMRLEVKEGKNGCLLINDSYNSDLGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 A+ L + S +R +L D+ E G+ + + + +A++++ I + G + + Sbjct: 351 DIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERIIGVGSEISS 410 Query: 414 LKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467 +I + L I + L + +++++K + GF L +L ++ Sbjct: 411 CAARF--NIEKAFYPDTAALTEAIGKGELRLENEIILIKGARKFGFDELTEVLEKK 464 >gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 481 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 214/472 (45%), Gaps = 20/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M +T + + G GI PQ ++ G+ DSR ++P + F A +G +G +F Sbjct: 1 MKE-FTAQQIADIVGGELYGIDPQTTLSAGVETDSREVSPGDIFVARRGETTNGIEFAPS 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSV 117 A+ G +V + V ++G ++P V D AL KLA A+ R T+IAITGS Sbjct: 60 AIAA--GAAIVIAEAVPTVGDDTLPSCVVTDATVALGKLASASVEALRETMTVIAITGSS 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+ K+++++ L+ +T SYNN +GVPLT R + F + E+G +G + + Sbjct: 118 GKTSVKDLVSVLLAGEGETVYPPNSYNNEVGVPLTALRAGEETRFLVLEMGARSIGNLAY 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT L+RP IAV + AH F I+ A AKAE+ E L++ G LN DD ++ Sbjct: 178 LTSLIRPDIAVELNVGAAHSGVFGSIDNTARAKAELVESLQEPGWAVLNADDPRVRDMQN 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGKSMEVVHHGIGYHMA 293 +S G+ D + + S++ + +V +G H Sbjct: 238 VLAQGVNTMWFSEGEPTRPDTTVWASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHV 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + + + + L+ R + T+I+++YNANP SM Sbjct: 298 SNALAAATVAHLCGVTARSIVTTLATAGA--ASRWRMELVDSPNGVTVINDAYNANPDSM 355 Query: 354 KAAISVLSQISP----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +AA+ L+++ + R +AVLG+M E+G+ S H + ++ NIS G Sbjct: 356 RAALITLAEMGRGDDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTIAVGE 415 Query: 410 HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + A + E + +QS L GD+V+ KSS G Sbjct: 416 GARPIYQAANLEGSWGNEAAWVENISEARDLLQSELQPGDIVLFKSSRDAGL 467 >gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2] gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2] Length = 607 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 196/442 (44%), Gaps = 35/442 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 197 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIKDKR 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + + LA R + ++ ITGS GKTTTK+++ LS KT G+YN Sbjct: 248 VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D E L + K ++ DF + K Sbjct: 368 NVFKAKTELLEFVDKENTFVCGDD----EYLGKLDVNKVGFNGNNTHKIESYDFSNKGSK 423 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + E +G H N + + + + + K L Sbjct: 424 FILDG-----------KEYEMSLLGKHNISNTSIAIELAKKIGLTDEEIQKGLKEIKISN 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIK----IGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +H+D+ L I ++L G + D ++ Y T +G+ +++ Sbjct: 527 EVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKN- 585 Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462 + V+++K+S +I Sbjct: 586 IKMDKVILLKASRGIKLEEIIK 607 >gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 469 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 140/480 (29%), Positives = 218/480 (45%), Gaps = 25/480 (5%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDF 56 M L T ++ +A+ G + Q V+G+ DSR IA F A G DGH F Sbjct: 1 MIAL-TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLF 59 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIA 112 AV+ GA L++V ++ L +P V DV+ AL +LA R ++A Sbjct: 60 APAAVEAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGDLRMVA 114 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TGS GKTTTK +L LS+ +T + + S+NN +G PLT+ ++ F + E+G S L Sbjct: 115 VTGSNGKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVTRTTRFLVAEMGASGL 174 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + +P + ++ T+ AH F GIE K E+ + L T LN DD Sbjct: 175 GEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRV 234 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + K+ A + FG+ A + + + + L S V + Sbjct: 235 SSMSDKTEAPVLW----FGRDARAAVRATDIVASAAGTTFTLHLPDGSERPVSFRVLGEH 290 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + + AI +S + + L T+I+++YNA+P S Sbjct: 291 HVTNALAAAAGAWALGVDGDAI--VSALQTVQRAERWRMEVLGGNGVTIINDAYNASPDS 348 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M AA+ L+QI E R +AVLG+M E+GE S+ H + + NI + + G Sbjct: 349 MAAALRTLAQIRG-PEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPAR 407 Query: 413 ALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L +A+ + ++E + L DGD+V+VKSSNS G L + L E++ Sbjct: 408 RLHLEAIAQGSWDGESIFAEDAAEAREILDRILRDGDLVLVKSSNSAGLRFLGDELGEKY 467 >gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces oris K20] Length = 483 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 131/483 (27%), Positives = 203/483 (42%), Gaps = 25/483 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + A+ G IG P V G + DSR A F A+ G DGH + A Sbjct: 7 LSLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVL 64 Query: 64 GAGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK--------- 107 GA +V+ A G ++ + V+D + AL LA + Sbjct: 65 GAVGAIVSDLEAARSGLSLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQAAAERGER 124 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 T++A+TGSVGKTTTK++ L++ T A S+NN IG+PLT+ + + E+ Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G S G I +LT + A + I AH+ F IE +A+AKAEI GL GT LN Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTAILNA 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286 DD+ + + + + + AD + + ++ ++ L G + Sbjct: 245 DDARAAA---MAELAPARVLTFSVRGRQADLRAENVDLDAAARAAFDLHLPGLAEPSRVQ 301 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + L A + + A + R + G LID+SY Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGIAPELVAERLGSVSIESPHRMDISELSGDLLLIDDSY 361 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NAN S ++ + G+ RR+ V+ +M E+GE S + H E+ + + + Sbjct: 362 NANIDS--MTAALAVLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAMLIG 419 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G AL+ A R + V + I + L DGD V+VK SN G +RL + L E Sbjct: 420 IGSTQEALEAAGARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRLADHLKE 479 Query: 467 EFP 469 P Sbjct: 480 VRP 482 >gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4] gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4] Length = 821 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 185/463 (39%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRNFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SK + + + + I + ++ +L + Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S +R +L DM E G+ S+ + +AE++ + + G + I Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] Length = 825 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 203/471 (43%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + I DSRS+ + FFA+K DGH++I Sbjct: 1 MT--YTIEKVTTLIGARRYG-DNDTNIGFILTDSRSLCFPEETLFFALKSERNDGHNYIP 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV N + V + L AL +LA R I+ ITGS Sbjct: 58 ELYRRGVKNFVVTNVPKGYASDYPGANFLKVVNTLEALQRLAERHRDEFNIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ M G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPSMFVTRSPRSYNSQIGVPLSVWLMNEQTQVGVFEAGISMPGEMLA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NFS +EE K +F T+ + DD + A Sbjct: 178 LRDIIQPTIAVLTNLGAAHQENFSSMEEKCREKLILFH---DAETVIYDGDDEVINKVIA 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + ++ K+ A F ++ ++ + + +G+ I QN + Sbjct: 235 EYPDYKGEKLFWSLKNAEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIPFIDNASVQNAI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ + S L + K ++ P R + Q TLI++SYN++ S+ A+ Sbjct: 295 ISAVVASKLGLSAEDIDKRMTQLEPV---AMRLEVKVGQHGCTLINDSYNSDINSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + G+ ++ + +++++ + G + D Sbjct: 352 DFMNRRPDHRGRRHTLILSDIYQSGQAPEALYKEVSDLARKRGVVKFIGIGPELCKQHDV 411 Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + S + ++ + +SL +V+++K + GF +L LL+++ Sbjct: 412 IQISEKF-FFPNVEEFIASEVFASLR-DEVILLKGARQFGFDQLTELLVQK 460 >gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 829 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 106/455 (23%), Positives = 182/455 (40%), Gaps = 23/455 (5%) Query: 5 WTF---HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 T +L + G G P+ + ++IDSR + P + F A+ G H DGHDF+ A Sbjct: 1 MTLPAPRELAALLDGELRGTPPEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAE 60 Query: 62 QKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA LVV+ D G V D L AL +LA R ++A+TGS GKT Sbjct: 61 GAGASLVVLRRDRCPDSGPGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 K LT L+ + + GS+N+ +GVPL + P + G+FE G+S GE+ L Sbjct: 121 VVKTALTALLAGRFRVASSPGSWNSQVGVPLAVLTAPPGTELGVFEAGISAPGEMERLEA 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P V+ + A+L +F A K +F+G++ + Sbjct: 181 ILQPDHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWVIAP----------DDPL 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +L + +++ L G +V H + ++L+ L Sbjct: 231 VNALPLPCRRIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPLVDDLLIAL 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L + L + R + +R T+I+++ + +P S++ A++ + Sbjct: 291 TAAHHLGVPAAEMAEVLQDYTFGPTRMETWR---TPEGITIINDTASDDPLSVQTALATV 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + GRR+ V G M ++G Q H + + + S + L + A Sbjct: 348 AAFP--EGGRRLFVFGGMGDLGPCEQREHALIGRMAAEQGFSGLLLLPHPARSHTAAAWN 405 Query: 421 SIH----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 H L I+ GD V++K Sbjct: 406 GCHPAQAAQELADTAALRERIRQMAEPGDTVLLKG 440 >gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] Length = 818 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 107/464 (23%), Positives = 191/464 (41%), Gaps = 14/464 (3%) Query: 4 LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60 +++ + Q +Q S + + + +DSR I A + FFAIKG H+DGH F+ A Sbjct: 1 MYSIQAIQQILQAKSPNLQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 Q G VV + V++V+ AL +LA R + +I ITGS GKT Sbjct: 61 YQAGVRSFVVTK-VPELSQFPEANFLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE L L S+N+ IGVPL++ + + GIFE G+S GE+ L + Sbjct: 120 TVKEWLFQLLYPHYAIIRSPRSFNSQIGVPLSVWGIQAQHELGIFEAGISRKGEMGNLAN 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++ I + T + AH FS E K + L Y + +A Sbjct: 180 IIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLL-----FAEVDLLIYRRDDATVHRAIKD 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S + NAD + K + + +E + Q + + +N + Sbjct: 235 LGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASIENAIHCW 294 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L + + ++ P R + +I+++YNA+ +S++ + + Sbjct: 295 AVLLHLGLKSEEIAERMAQLEPV---AMRMELLDGRNNCLIINDTYNADLSSLRLGLQWM 351 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q R VL ++ + G + + +A+++ + +S V G LPR Sbjct: 352 RQH--EHGRNRSLVLSEILQSGSSDEKLYRKVAQLIQEHQVSRVIGIGPATAVFATLLPR 409 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 IH + ET + L + +V+++K + + L Sbjct: 410 EIHQLHFETTEALLEALPHLSFQSEVILIKGARQYHLETIAQAL 453 >gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] Length = 504 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 135/500 (27%), Positives = 202/500 (40%), Gaps = 38/500 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T + + I PQ V G + DSR I P F A+ G DGHDF Sbjct: 1 MIELTT-QKIAEVTGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------------LNKLAVAARL 104 A+ GA L++V V L+ PV + A L + AR Sbjct: 60 AALNSGAALLIVGRP-VEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARY 118 Query: 105 RSK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 + ++ +TGS GKT+TK+++ L +T A GS+NN IG+P T R Sbjct: 119 NTDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAG 178 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D F + E+ +G I+ LT + P + V+ + AHL F + IA AK E+ E L Sbjct: 179 RDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL 238 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--------GKSKNADFQLRKWKQCSEQ 269 L ++ + + A + + G + + + Sbjct: 239 PAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARA 298 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 S+M G+ + V G H N L + + D T LS Sbjct: 299 SFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMD 358 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSF 388 R T+I++SYNANP SM+A I L+ + AVLG M E+GE + Sbjct: 359 VRTR-ESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMGELGEDASDE 417 Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445 H +L VL+ I H + G + AL +A + E +DG ++ SL D Sbjct: 418 HAELGHVLAQRRIDHAVIVGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQD 477 Query: 446 VVVVKSSNSCGFYRLINLLL 465 VV++K+S S G + + LL Sbjct: 478 VVLIKASYSDGLWAVAEGLL 497 >gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 821 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 185/463 (39%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRSFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SK + + + + I + ++ +L + Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S +R +L DM E G+ S+ + +AE++ + + G + I Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus opacus B4] gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus opacus B4] Length = 504 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 123/501 (24%), Positives = 193/501 (38%), Gaps = 52/501 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T + + + G P V G + DSR + F A+ G DGHD Sbjct: 1 MIPM-TLARIAEIVGGELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALN----------------- 96 AV+ GA V+ + +P V A+ Sbjct: 60 SAVEAGAVAVLAARP-------VGVPAVVVSPAPGTGPSKAMALEHDTDGSGAAVLAALA 112 Query: 97 ---KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 + +V T++ +TGS GKT+TK++L L + A GS+NN +G P T Sbjct: 113 KLARASVDDLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTA 172 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R F + E+ G I L + P I V+ + AHL F + IA+AK E+ Sbjct: 173 LRADAGTGFLVLEMSARDRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGEL 232 Query: 214 FEGLEKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E L LN DD + ++ A + S A + + ++ Sbjct: 233 PESLPSADDGGVAILNADDPLVVAMAPRTSARVVLVGRSESAHVRATDIVLDERA---RA 289 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + S+ V G H N L + AD+D +ALS GR Sbjct: 290 RFTLTTAAGSVPVELAVHGEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGRRMDV 349 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCEMGELSQS 387 R + T++++SYNANP SM+AA+ L ++ G R AVLG+M E+G S Sbjct: 350 RDRPDGV--TVVNDSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPESVV 407 Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441 H + ++S + + G A+ + G ++ L Sbjct: 408 EHDAIGRFAVRLDVSRLIIVGTGRPARAMHQGAVMEGSWGEESILVPDIAGAVALLEKEL 467 Query: 442 VDGDVVVVKSSNSCGFYRLIN 462 GD+V+VK+S S G + + + Sbjct: 468 APGDLVLVKASQSIGLWEVAD 488 >gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis 409-05] gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis 409-05] Length = 536 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 141/511 (27%), Positives = 210/511 (41%), Gaps = 53/511 (10%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ +A+ G N + DSR I F AI G H DGHD++ Sbjct: 27 MMPM-SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112 +A + GA + +V + ++ V++ + AL LA TII Sbjct: 86 KNAEKSGAVVAIVEH----VVEGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIG 141 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+ML LS++ +T A +GS+NN+IG+PLT ++ + F I E+G +H+ Sbjct: 142 ITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LTH+ P +A++ + AHL F +E IA AK+EI GL G LN DD Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRV 261 Query: 233 ELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---------- 277 + G +S + D S+ + Sbjct: 262 SAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNSSNL 321 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQ 336 +EV G H N L + L +D LS + N Sbjct: 322 MNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKND 381 Query: 337 GFFTLIDESYNANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHID 391 FTLID+S+NANP SMKA I L S + RIAVLG M E+G H + Sbjct: 382 EKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTN 441 Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDA---------LPRSIHVHYSETMDGLF 434 + E ++ ++ V G + L V++ + D Sbjct: 442 IGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSADEAD 501 Query: 435 LFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463 + + VV++K S++ G L Sbjct: 502 DIVWKIVAEHPSSVVLLKGSHASGLSVLAEY 532 >gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paraprevotella xylaniphila YIT 11841] gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paraprevotella xylaniphila YIT 11841] Length = 432 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 121/435 (27%), Positives = 190/435 (43%), Gaps = 18/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG ++G+ F A+++G +V+ A V+ Sbjct: 16 VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEAEYAVGDDE--RYILVE 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L +LA R + K +I +TG+ GKTTTKE+ LS G+ NNHIGV Sbjct: 74 DVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL + + + E G SH GEI+ L +V P +IT + AHL F E + Sbjct: 134 PKTLLELTSEHTIAVIETGASHPGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L DS + + Y + + + Sbjct: 194 KGELYDYLRAKHGTVFINHDSED---LKRIAGGLHQICYGSPCDEVLSVEGEVLECAPFL 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G+ EV IG + QN+L I +VD +AL+ + PK R + Sbjct: 251 KFRWRPAGGEWQEVQTGLIGAYNMQNLLAAATIGRTFGVEVDAVNRALAAYEPKNNRSQL 310 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ L+ ++YNANP SM+AAI + R+A+LGDM E+G+ S H Sbjct: 311 TETDDNK----LLVDAYNANPTSMRAAIENFRDMKVER---RMAILGDMGELGDCSWKAH 363 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +A++L HVWL G A + + ++ + ++ G +++ Sbjct: 364 QAIADLLVESGFEHVWLVGPKFKAARH------PFRTFDNVEQVKKALEIKKPKGYYILI 417 Query: 450 KSSNSCGFYRLINLL 464 K S+S Y L + L Sbjct: 418 KGSHSTRLYDLPDYL 432 >gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11A3] Length = 457 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 195/465 (41%), Gaps = 16/465 (3%) Query: 5 WTFHDLLQAIQ--GHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 ++ +L + + ISIDSR++ + F AI+G ++DGH F+ + + Sbjct: 3 FSLSELNNVLGDIKNLSEGKRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG VV+ + + + P + V+D L A KLA+ R + IIAITGSVGKTT Sbjct: 63 DKGVQSVVI-KKGMQRLLPSNFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTT 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ L+ + + ++NN IGV LT+ ++ + E+GM LG+I L+ Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATEIEDKALVLEMGMRGLGQIENLSKY 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAVIT I AH+ + I AK EI + L G + + +D F E + Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKYLNPEGVVIIPANDPFLEKTLKEVWK 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + D ++ + + + G+H A N L Sbjct: 242 GRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFEISLEGFHNASNFLFAYA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L D + K L T+ DESYNA+P S+KA I L Sbjct: 302 VAKELGIDFASFNKFDFAILG------GRNKILKSVKTTIYDESYNASPESVKACIKNL- 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419 + + G M E+GE S+ +H ++ +++ +I + + + L Sbjct: 355 ---LEKPRNKFFIFGSMQELGEQSEKYHKEIFNLINNSDIEKCVFICDKKNEKSYTNYLK 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + I S GD V++K S ++I L+ Sbjct: 412 DKKKFLVLNNIKDVPKEINKSTKKGDSVLIKGSRFWQLEKIIELI 456 >gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC 27126] Length = 431 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 124/430 (28%), Positives = 191/430 (44%), Gaps = 17/430 (3%) Query: 40 QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99 + A+KGP+++GHDFI A + GA V+ + D+ S+PV V+D AL L Sbjct: 1 GAVYLALKGPNFNGHDFISTAEKAGASAVIASEDVA-----TSLPVIMVEDTKEALGLLG 55 Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 A + IAITGS GKTT KEM L A G++NN IGVPLTL R+ Sbjct: 56 AAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFNNDIGVPLTLLRLEPQ 115 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 ++ + ELG +H+GEI + T+LV+P +A I A +HL F + +A AK+EIF+GL Sbjct: 116 HEYAVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGS 175 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G +N D F E + K L +F + D R Sbjct: 176 DGVAVVNVDSQFSEFWQGK---LKQTKTLTFSPQQKNDADFRAEDITIGLDGCAAFHLVC 232 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + N+ L ++ + + R Sbjct: 233 PQGDMSIQLTIPGVHNVGNALVAAALTLQVGASLENVRDGLLAMKQVSGRLNVKQLTEQV 292 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 L+D++YNAN AS+ AAI LS S G R+ VLGDM E+GE ++ +H + E Sbjct: 293 RLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKELGEKARFYHEQVGEYAKQK 348 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCG 456 I++++ G + + + ++ L ++S L D+ ++VK S S Sbjct: 349 GINYLYTMGVLSQSASAVFNENGG--HFSDVESLLAAMESDLLVQQRDISILVKGSRSSR 406 Query: 457 FYRLINLLLE 466 R++ + Sbjct: 407 MERVVEAVEA 416 >gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium periodonticum ATCC 33693] gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium periodonticum ATCC 33693] Length = 613 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 200/441 (45%), Gaps = 35/441 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 V + +DSR + FFAI +G+ +I + KGA LV+ + + + Sbjct: 201 VQVKNVVMDSRKVTEGSLFFAI----NNGNSYIKDVLDKGASLVIAD-----NTDVVDER 251 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D + + LA R + +I ITGS GKT+TK+++ LS KT G+YN Sbjct: 252 IVKVSDTVATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYN 311 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRD 371 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D +L K G ++ ++++ ++ Sbjct: 372 NVFKAKTELLEFVDKEDTFVCGDDVYLAKLDVNK-----------IGFNEENNYRIESYE 420 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S + + E +G H N + + + + + + L Sbjct: 421 FSDKGSKFTLDGK----EYQMSLLGKHNISNTAIAIELAKKIGLGEEEIEEGLKDIKISG 476 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + R G I+++YNA+P SM AAI L++I + + +IA+LGDM E+GE Sbjct: 477 MRFQEIR----VGQDIYINDAYNASPTSMMAAIDTLNEI--YNDKYKIAILGDMLELGEE 530 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +H+++ L I ++L G + D ++ + T + + ++S Sbjct: 531 EVKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKFEEHRFCHYSTKEEIVESLKSI 590 Query: 441 LVDGDVVVVKSSNSCGFYRLI 461 ++ V+++K+S +I Sbjct: 591 KMEK-VILLKASRGTALEDII 610 >gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Porphyromonas gingivalis ATCC 33277] gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis ATCC 33277] Length = 434 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 120/432 (27%), Positives = 196/432 (45%), Gaps = 16/432 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR P FFA+KG +DG+ F A++KG L VV+ V VD Sbjct: 16 VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVV----RDERYLLVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +LA R +I ITG+ GKTTTKE++ LS+ G+ NNHIGV Sbjct: 72 DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + I E+G + G+I LT + RP+ +IT I AHL F +E + Sbjct: 132 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNFGLITNIGRAHLQGFGSLEGVRRT 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ + G I D S+G S +A + + Sbjct: 192 KEELYDFIRAEGGILFLNFDDDT-----LIDMSQGLQSVSYGTSADATVRGLIVANNTPY 246 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 +++ +V + +G + N L + + + AL+ + P R Sbjct: 247 LCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKP---SNNR 303 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + +LI ++YNANP SM+AA+ + H + + +LGDM E+G S+ H Sbjct: 304 SQWIETERGNSLIVDAYNANPVSMRAALDNFDSL--HTDKPLVLILGDMNELGAESKREH 361 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L E ++ + L G + AL D+ P L ++++ + ++++ Sbjct: 362 MALLERINTGRYRQILLCGPCLTALADSFPGGATG--FADNAVLEEYLKAHSIHDSLILL 419 Query: 450 KSSNSCGFYRLI 461 K S+ ++I Sbjct: 420 KGSHGIHLEKII 431 >gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris F0302] gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris F0302] Length = 438 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 118/438 (26%), Positives = 189/438 (43%), Gaps = 18/438 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR+ F A+KG +DG+ F A+ KG +++ A + + VD Sbjct: 16 ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADND--RLILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L KLA R R +I ITG+ GKTTTKE+++ L+ G++NN +GV Sbjct: 74 DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I L P +IT + AHL F E + Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ + + + + A+ + Y N ++ Sbjct: 194 KGELYDYLKAHDCLLFLNESNADLVDMARQREMNRIITYGQSDDANVRGEVIDCAPFLHF 253 Query: 270 SWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 SW + + + ++ EV H IG + NM + I + AL + P R Sbjct: 254 SWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVTPEQINHALESYVPANNR 313 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 + A N+ LI ++YNANP+SM AAI ++ ++A+LGDM E+GE+S Sbjct: 314 SQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMRELGEVSD 366 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H L + L VWL G + +D + I + + Sbjct: 367 LEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRK------FRNVDEVKAEIAAHCPENCY 420 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K SN + L LL Sbjct: 421 ILIKGSNGIKLFELPELL 438 >gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris RCH1] Length = 478 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 99/461 (21%), Positives = 183/461 (39%), Gaps = 11/461 (2%) Query: 5 WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +++ +++ G +G + DSR +AP + F I+G +DGHDF V++ Sbjct: 3 LTPNEMRESLGAGAILGAQGDATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQ 62 Query: 64 GAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +++ D S + + VDD + AL +LA R+RSKA ++ +TG+ GKTT Sbjct: 63 GARVLIAERDPFNGECPSADVTIMVVDDSVKALGRLANLHRMRSKARVVGVTGTAGKTTV 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE+L L T + NN IG+PL++ + F + E G+S ++ L ++ Sbjct: 123 KELLAQVLGVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVL 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I ++ + H++ +A K+ + L + GT + D +A+S Sbjct: 183 RPDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHLAEGGTGLVCADYDDLVR-EARSVCR 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ + G+ + S V+ + + + + Sbjct: 241 RLQFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENV 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQGFFTLIDESYNANPASMKAAISVL 360 ++ A + + + G F ID++YNANP S + + Sbjct: 301 AAVAAAAHLCGLSGEEIAAGLAEAVLPRQRFACATVGGFVCIDDTYNANPLSSARMVEAV 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK---DA 417 ++++ G + VLG+M E+GE + H L L+ V+ G + A+ Sbjct: 361 TEMAA--GGPLVFVLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGLRL 418 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + S + V+ K S Sbjct: 419 GGYGGLFCAVDDTASFVDRFASLGLASAHVLFKGSRGNRLE 459 >gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17029] gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter sphaeroides ATCC 17029] Length = 477 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 178/475 (37%), Positives = 248/475 (52%), Gaps = 16/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT + A G+SID+RS+ P + F A+ DGH F+ A Sbjct: 1 MTPLWTSDE---AAAATGGCATRAFAATGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGKT Sbjct: 57 LARGAAAALVSR--RPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALG+ +FG++ +AD++L + E + G + G H A N L TL Sbjct: 235 ALGV-PAVTFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357 L D+ A L ++ P GRG R R AL+ F LID+++NANPASM A++ Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353 Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G + Sbjct: 354 ELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL +ALPR + ET L + + GD+V+VK S +++ L + Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468 >gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera] Length = 510 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 138/476 (28%), Positives = 213/476 (44%), Gaps = 33/476 (6%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-LHA 60 +PLWT ++ +A+ G + P G + D+R++ P + FFAI+G ++D H+FI Sbjct: 49 SPLWTVDEIAEAVNGTIVQRGPPGPI---CTDTRTLEPGQWFFAIRGENFDAHEFITPEL 105 Query: 61 VQKGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 KG V+ + V G L +L K+A AR + ++ + Sbjct: 106 GHKGCVGVIGNWVCPNWDKGFVEMGGE----------TLTSLEKMANYARNKFHGCLVGV 155 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTT+ M+ + L S+ + G+ NN IGV L+L +P +V F + ELGM G Sbjct: 156 TGSAGKTTTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRG 215 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI L RP I VI + AHL NF+ +EE+A AK EI + LN DD Sbjct: 216 EIMELARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVM 275 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHM 292 L FG+ D + K + ++ + +E V G H+ Sbjct: 276 SL----PVPHGVKKVLFGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHL 331 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 AQN T + L + +LS F P R + + +I++ YNANP S Sbjct: 332 AQNACATAAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVS 388 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 KAAI +L I +G+R+A+LGDM E+G+ H + + + + L G L Sbjct: 389 TKAAIELLKNI--DCKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFL 446 Query: 413 ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++ YS + L I L DV++VK S +++ + Sbjct: 447 RAAENLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVVAAIKA 502 >gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM 18228] gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM 18228] Length = 821 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 198/463 (42%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + IG P ++ I DSRS+ + FFA+K DGH +I ++ Sbjct: 4 TIEEITSVMGAERIGNAP-ARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV+ + V + L AL +L R + + ++ ITGS GKT K Sbjct: 63 GVRNFVVSDLPENGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ + + GIFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPERIITRSPRSYNSQIGVPLSVWLLNEHTELGIFEAGISEMGEMEALRPIIQ 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P I V+T I AH NF+ +++ K ++F + I N D+ AKS Sbjct: 183 PTIGVLTNIGGAHQENFTSLQDKCMEKLQLF---KDCDVIIYNGDNELISSCVAKSLFTA 239 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +S K + + + ++ + G E I +N L L + Sbjct: 240 REIAWSM-KDTERPLFIESISKDETGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVA 298 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + + + P R + LI++SYN++ AS+ A+ +++ Sbjct: 299 LYLMVSPEVIAERMLRLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + +R +L D+ E G++S+ + +A+++ + + G + A I Sbjct: 356 TEDKGRKRTLILSDILESGQVSKLLYRQVADLVHSRGVDRIIGVGEEISAYASRFE--IE 413 Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + L + S L +VV++K + F + ++L Sbjct: 414 KQFFRSTNELLASGVLSGLR-NEVVLIKGARVFHFDDITDVLE 455 >gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA] gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA] Length = 821 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 101/463 (21%), Positives = 186/463 (40%), Gaps = 14/463 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ + + G ++ I DSRS+ + FFA+K DGH ++ ++ Sbjct: 4 SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G VV V + + L L KLA R + + +I ITGS GKT K Sbjct: 63 GVRNFVVGELPVDLQSFQDANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS + SYN+ IGVPL++ M + IFE G+S +GE+ L +++ Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P + ++T I AH NF +++ K +F+ + L + A Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SK + + + + I + ++ +L + Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ + + E R + LI++SYN++ AS+ A+ +S+ Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 S +R +L DM E G+ S+ + +AE++ + + G + I Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ T + L + + L +V++VK S + F R+ + L Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455 >gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 3_1_27] gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 3_1_27] Length = 607 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 196/442 (44%), Gaps = 35/442 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 197 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIKDKR 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + + LA R + ++ ITGS GKTTTK+++ LS KT G+YN Sbjct: 248 VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D E L + K K+ DF + K Sbjct: 368 NVFKAKTELLEFVDKENTFVCGDD----EYLGKLDVNKIGFNGNNTHKIKSYDFSNKGSK 423 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + E +G H N + + + + + K L Sbjct: 424 FILDG-----------KEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIK----IGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +H+D+ L I ++L G + D ++ Y T +G+ +++ Sbjct: 527 EVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKN- 585 Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462 + V+++K+S +I Sbjct: 586 IKMDKVILLKASRGIKLEEIIK 607 >gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 489 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 169/478 (35%), Positives = 239/478 (50%), Gaps = 27/478 (5%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LW+ ++ +A G + G +G+ +DSR + P + F A+KG DGH FI A Sbjct: 25 ALWSADEIAEATGGVASG---DFQCSGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFA 81 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V+ + P V+D AL+ LA AAR R +AT IA+TGSVGKT Sbjct: 82 AGAAAAIVDRP-------IDWPHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGV 134 Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE + AL + + + SYNNH+GVPL++ARM +G+FE+GM+H GEI L Sbjct: 135 KEAIFSALDRASRGQAHRSVRSYNNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAPLAD 194 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 VRP +AVITTIAPAH+ N +E IA KA+IF GL+ G + D FE LKA + Sbjct: 195 HVRPDVAVITTIAPAHIENLGSLEAIADEKAQIFTGLKPGGAAIIPADSEQFERLKAHAE 254 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A G + +SFG++ +A +L + S + Q+ + G H N L Sbjct: 255 AAGAEV-FSFGRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLA 313 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + D+ A AL +GRG R+ A G LIDESYNANPASM + Sbjct: 314 VMACIYAVGGDLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASM---RA 370 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---- 414 L+Q+ RRIAVLG M E+GE S FH L E + + + L G + L Sbjct: 371 TLTQLGQTPASRRIAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKM 430 Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467 + L + ++ L GD ++VK SN+ G RL++ + Sbjct: 431 GTAHANGLGNPPAFAHCAGPAEAIAALEEFGLNAGDAILVKGSNAVGLGRLVDHFVSR 488 >gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2M] gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2] gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2] gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia multivorans CGD2M] Length = 468 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 109/472 (23%), Positives = 193/472 (40%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ +S DSR++ + F A+KG +D HDF+ Sbjct: 1 MT-MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + +++P+ + +L LA R R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAQAPAGVALPMIVGGETRASLGALAHGWRKRFALPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETEI 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDDERQTAAQVAGRLHGGELAIDTPSGTLTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356 + + L F P +GR + R + T++D++YNANP SM+AA Sbjct: 293 AATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGEAAR--HFDDVGTLVDALLAAGYGAEASVLVKGSRYMKMERVVDALTNQ 458 >gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Brevibacterium linens BL2] Length = 488 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 203/477 (42%), Gaps = 23/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + ++ A+ G G+ P+ ++ G+ DSR + P + + A +G +DG +F Sbjct: 1 MKRL-SAAEIATAVSGELYGVDPETKLSAGVVTDSREVGPGDIYVARRGESFDGIEFAAA 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAITG 115 AV+ GA L++ + V ++ ++P V D AL +LA R + T+IAITG Sbjct: 60 AVEAGAALIIGES--VPTLDDATLPTVLVSDATEALGQLAKCNIESLREAGEITVIAITG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 SVGKTT K++ L+ +T SYNN +GVPLT R F + E+G +G + Sbjct: 118 SVGKTTVKDLAADLLAGEDETVWPPNSYNNEVGVPLTALRAGETTRFLVLEMGARSIGNL 177 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT LVRP IAV + AH F IE A AKAE+ E L LN DDS + Sbjct: 178 AYLTSLVRPDIAVELAVGTAHSGVFGSIENTARAKAELVESLSAGSVAILNADDSRVAGM 237 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + +S +S + + + Sbjct: 238 REVLSPDVSTLWFSQRESLPEWVADEDSVVRGTGVTTDASGHATFSLNLPGEEPQDVRLA 297 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEG-------RGKRYRCALNQGFFTLIDESYNA 348 ++ + + L + + + R + T+++++YNA Sbjct: 298 LIGEHHVGNALASAAIAHACGVGMKSIVTTLSTSSAASRWRMELIDSPSGVTVLNDAYNA 357 Query: 349 NPASMKAAISVLSQISP----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NP SM+A++ L+ + R AVLG+M E+GE S S H D+ E++ NI+ Sbjct: 358 NPESMRASLKTLASMGRGDEESRPRRTFAVLGEMLELGEESISAHSDIGELVVRLNITRT 417 Query: 405 WLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + +A + T + + L GD+V+ KSS G Sbjct: 418 IVVGDGAKPIFNAANLEGSWGNEAAWVPTAAEAKDLLNAELAPGDIVLFKSSRDAGL 474 >gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 442 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 109/430 (25%), Positives = 191/430 (44%), Gaps = 13/430 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R FFA+KG +++G+ F A+++G VV+ IG+ VD Sbjct: 17 ITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVDESTPDMIGNEQ--YIIVD 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L +LA R TII ITG+ GKTTTKE+L L+ +G+ NN IGV Sbjct: 75 NVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNLNNDIGV 134 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + + E+G SH G+I+ L +V P+ A+IT + AHL F + + Sbjct: 135 PKTLLRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALITNVGRAHLQGFGSFDGVKRT 194 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KAE+++ +E + ++ L Y N+ + + Sbjct: 195 KAELYDFMEAHNRANNIFINAESADLLEMFSTHCKSESYIAYSPTNSVEASFVAEITANN 254 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK--EGRG 327 ++ + + + E +++ ++ +++ + Sbjct: 255 PFVSFRWKETNNESDTWHNVGTHLIGAYNIANMLAAVSIGRTMGVESKDICKALENYIPS 314 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + T+I ++YNANP SMKAA+ ++ + + +LGDM E+GE+S Sbjct: 315 NNRSQLIKTAHNTIIMDAYNANPTSMKAALENFIKMDVERK---MVILGDMKELGEVSNC 371 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + ++L+L VWL G +A ++ E ++ + +Q + V + Sbjct: 372 EHQKICDLLNLAQFDCVWLVGKEFMATQNDFKS------FENVEQVIAELQQTDVQNFCI 425 Query: 448 VVKSSNSCGF 457 +VK SN G Sbjct: 426 LVKGSNGIGL 435 >gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 459 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 192/472 (40%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +DGHDF Sbjct: 5 MKPL-DLNFICQALN--LPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFAEDV 61 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VV+ + A + V D L AL LA A R + ITGS GKT Sbjct: 62 LAAGAAAAVVSREDCAGLRGA----LQVADTLEALQTLAQAWRENVNPFVFGITGSGGKT 117 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G+ NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 118 TVKEMLAAVLRRRFGEEAVLATAGNLNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 177 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + RP A++ AH+ F G +IA AK+EI++GL + Sbjct: 178 LTRIARPDAALVNNALRAHVGCGFDGTADIARAKSEIYQGLGAD----GLALIPCEDANA 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 R ++ ++ V G H N Sbjct: 234 EIFQTASAAHKQQTFGVDKGGVHARNIVLKPLSCAFDLVCGSETASVSLPVPGRHNVHNA 293 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + ++ L F +GR K R TLID++YNANP SMKAA Sbjct: 294 VAAAALALAAGLTLNEVSDGLKDFSNIKGRLKVKRGIKG---ATLIDDTYNANPDSMKAA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+ + R+ V+GDM E+GE + + H ++ I + G + + Sbjct: 351 IDVLAALPA----PRVFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 406 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + D L + L +G V+VK S + + L ++ Sbjct: 407 ETFGAA--GLWFAAKDPLIQVLTHDLPEGASVLVKGSRFMAMEEVADALEDK 456 >gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 424 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 186/438 (42%), Gaps = 27/438 (6%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I D+RSI P FFA+KG ++G+ F L A++ GA VV+ ++ + V Sbjct: 12 SICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDENVGD-----DERLIKV 66 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 DVL A+ A+ R I +TGS GKTTTKE+ L + K +A G++NNHIG Sbjct: 67 SDVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGNFNNHIG 126 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ P + + I E+G +H EI L + P + IT AHL F G+E I Sbjct: 127 VPLTILSAPKETEMLIVEMGANHQKEIGQLASIAEPTLGYITNYGKAHLEGFGGVEGIIK 186 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+++ + + + L+ +FGK+ + K Sbjct: 187 GKSELYDYIAQNEEGVALVNADDAIQLEK----SAACRRTTFGKTNAQFTYTVEEKDEFA 242 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + +++ G + L ++AL+ + P R + Sbjct: 243 GIQFSIATASYTIQSNLSGSFNCTNLAAAVAL--GRYCDVPAPAIVQALTDYLPAMNRVE 300 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + NQ ++ ++YNANP SM +I ++ G VLGDM E+GE S + Sbjct: 301 WRKTPSNQ----VLLDAYNANPTSMSLSIENFAKWHKDG----WLVLGDMFELGEESAAE 352 Query: 389 HIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-V 446 H + +++ N+ L G H S T L + + + D Sbjct: 353 HRAIVKLVQRINMEERCILVGKHFGRT------SWRGKQFPTTGDLKTYWKENGAPKDAA 406 Query: 447 VVVKSSNSCGFYRLINLL 464 +++K S +L+ LL Sbjct: 407 ILLKGSRGIALEQLLPLL 424 >gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia ambifaria MEX-5] gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia ambifaria MEX-5] Length = 468 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 113/473 (23%), Positives = 194/473 (41%), Gaps = 21/473 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ P +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGAAVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118 + + + + + V+ + AL LA R R ++A+TGS G Sbjct: 60 AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113 Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTT KEM+ ++ A G+ NN IGVPLTL R+ + ELGM+H GE Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L L P +A++ H + +E +A A + L G DD++ + Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYAGIW 233 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + A I F + + + ++ V +G H A+N Sbjct: 234 R---VAATGNPILDFALHDAERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354 L ++ + L F P +GR + + + T++D++YNANP SM+ Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMR 350 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + H+ + + + + V+VK S R+++ L + Sbjct: 407 CTAYGATAR-HFGDVGALVAALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458 >gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis 5-1] gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis 5-1] Length = 536 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 141/511 (27%), Positives = 210/511 (41%), Gaps = 53/511 (10%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ + ++ +A+ G N + DSR I F AI G H DGHD++ Sbjct: 27 MMPM-SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112 +A + GA + +V + ++ V++ + AL LA TII Sbjct: 86 KNAEKSGAVVAIVEH----VVEGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIG 141 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+ML LS++ +T A +GS+NN+IG+PLT ++ + F I E+G +H+ Sbjct: 142 ITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LTH+ P +A++ + AHL F +E IA AK+EI GL G LN DD Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRV 261 Query: 233 ELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---------- 277 + G +S + D S+ + Sbjct: 262 SAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNSSDL 321 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQ 336 +EV G H N L + L +D LS + N Sbjct: 322 MNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKND 381 Query: 337 GFFTLIDESYNANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHID 391 FTLID+S+NANP SMKA I L S + RIAVLG M E+G H + Sbjct: 382 EKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTN 441 Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDA---------LPRSIHVHYSETMDGLF 434 + E ++ ++ V G + L V++ + D Sbjct: 442 IGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSADEAD 501 Query: 435 LFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463 + + VV++K S++ G L Sbjct: 502 DIVWKIVAEHPSSVVLLKGSHASGLSVLAEH 532 >gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] Length = 460 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 216/467 (46%), Gaps = 21/467 (4%) Query: 7 FHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + G+ I + + IS +SR+ F AIKG ++DGH F +V+ Sbjct: 6 LKKIASIVSGNLQKISCFHASKLIIQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVK 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G+ ++ I S+ P V++ + A+ +LA R +S A IAITGS GKT+ Sbjct: 66 NGSLAILSEK-----ILSIDHPQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSV 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM LS + T + + NN +GV LTL R+ + + E+G S LGEI+F + +V Sbjct: 121 KEMTHTILSQVGSTISTKKNNNNSLGVLLTLLRVNEFHQYVVIEIGASQLGEIKFSSKIV 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + +I + +HL F ++ AK+EIF GL K T +N D+ + K K L Sbjct: 181 NPDVVLINNLFASHLKGFGSFSNLSRAKSEIFFGLSKFNTAVINLDNHDIKHWKHKIRNL 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +S K K + F + + ++ V H G H N + + + Sbjct: 241 SKVWFFSLKKKKKSHFYSNTISEKNFFMKFDIHTPFGIARVSSHLAGLHNISNSIASAAL 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + A +D K L FHP +GR + ++D++YN+N SMK+AI VLS+ Sbjct: 301 SISVGAKIDQIEKGLKNFHPIDGRMYPVYISSE---KIILDDTYNSNFGSMKSAIDVLSK 357 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + G R+ V+GDM E+G+ S +H ++ ++ N++ + G + L + + + Sbjct: 358 MP----GYRVLVVGDMLELGQYSSFYHKKISRIIQNKNLNTIISFGKYSLFISQSFQNGM 413 Query: 423 HVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLINLLLEE 467 H H + L + + + +++K S +I + Sbjct: 414 HFH---SKKKLTKKLIYLISIHEKISILIKGSRKMRMEEVIEDIRRR 457 >gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] Length = 473 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 103/460 (22%), Positives = 183/460 (39%), Gaps = 23/460 (5%) Query: 7 FHDLLQAIQ-GHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++ + + V + DSR P F I G DGHD+ AV++G Sbjct: 5 LAEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ + LS+PV V D + AL +A R +S A ++ ITGS GKTT KE Sbjct: 65 AVAVLAARPLEG----LSVPVLLVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKE 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L LS KT + NN +G+PL + + D DF +FE G+SH G++ L +++P Sbjct: 121 LLAHVLSRRGKTACNALNLNNQVGMPLCMLKTDGDEDFWVFEAGISHEGDMDELGAILQP 180 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A+I + AH +A K+ + L G ++ D +A++ + Sbjct: 181 DLALILNVGAAHTEGLGER-GVAWHKSRLLAHLAPEGQALVSADYDDLVR-EARAVFGDV 238 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G+ + + + Y + + Sbjct: 239 LFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPCDVIAPFRGDYGTENCIAVAAAAHM 298 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + A P + + R G + ++D++YNANP SM + ++ + Sbjct: 299 LGLTAEEIAAGFADAQLPPQRFARSRR-----GNWDIVDDTYNANPLSMARMLDAAAESA 353 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421 + VLG+M E+G ++ H L L+ V+ G H A++D L Sbjct: 354 QKRP--FVVVLGEMRELGGVADREHERLGRHLAQLRPVLVFWRGGHADAVRDGLEHGLYT 411 Query: 422 IHVHYSETMDGLFLFIQSSL-----VDGDVVVVKSSNSCG 456 ++ + ++ L G +++ K S Sbjct: 412 GKFLPVDSGEAFVQALREHLPADTGEQGGLMLFKGSRGNH 451 >gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella gracilis ATCC 19624] gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella gracilis ATCC 19624] Length = 496 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 122/490 (24%), Positives = 204/490 (41%), Gaps = 29/490 (5%) Query: 3 PLWTFHDLLQAIQ-GHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 P++ D+L + + + V + DSR++ + F A++G +DG+ Sbjct: 7 PMFGLRDILPWLGNAQLLADEAGGPAVDEVRVRRVHTDSRTLREGDLFVALRGDRFDGNA 66 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATII 111 F+ A GA + + A++ +P V D AL +LA R + +I Sbjct: 67 FLAQARAAGAVAALCSD--AAALRQAQLPGIVVSDTRRALGQLAQGWRQHIARGHRLPLI 124 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 A+TGS GKTT +M L + K G++NN IGVPLTL R+ + + ELGM Sbjct: 125 AVTGSNGKTTVTQMTAAILRAHKPQTMLATEGNFNNDIGVPLTLLRLRPRHELAVVELGM 184 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H GEI L + RP +A++ H IE +A + L G DD Sbjct: 185 NHPGEIAELAAITRPTVALVNNAQREHQEFMHSIEAVARENGAVISALGADGVAVFPSDD 244 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQ-------LRKWKQCSEQSWMEVQLQGKSME 282 ++ + + A T + + + + ++ + ++ Sbjct: 245 AYTGIWHELAGARSRLTFSVNDAAADLHCADPALAAPQWQVDDKGGRWEVQARTPAGALR 304 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G H +N L ++ + L F P GR + R + TLI Sbjct: 305 FTLRVAGLHNVKNALAAAACALAAGVPLNAIARGLESFEPVSGRSRALRLPVAGRELTLI 364 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D++YNANP S++AAI VL+ + G R+ VLGDM E+G+ FH ++ I Sbjct: 365 DDTYNANPDSVRAAIDVLASLP----GPRLLVLGDMGEVGQEGPRFHAEVGTYARARGIE 420 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + G A A + H+ + +D L L + +SL V+VK S R++ Sbjct: 421 LLHTLGEMSEATTQAFTGGM--HHGQDIDALNLVVLASLPQVHSVLVKGSRFMKMERVVQ 478 Query: 463 LLLEEFPAIQ 472 + + A++ Sbjct: 479 AIQA-YAAME 487 >gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 609 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 112/441 (25%), Positives = 201/441 (45%), Gaps = 35/441 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIADER 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D + + LA R + +I ITGS GKT+TK+++ LS KT G+YN Sbjct: 248 IVKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P T+ + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 308 NHIGLPYTILNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E + K T D +L K G +++ +F++ ++ Sbjct: 368 NVFKAKTELLEFVNKENTFVCGDDVYLAKLDVNK-----------IGFNEDNNFRIESYE 416 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S + + E +G H N + + + + + + L Sbjct: 417 FSDKGSKFTLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISS 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + R + I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIRVGED----IYINDAYNASPTSMKAAIDTLNEI--YDDKYKIAILGDMLELGED 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +H+++ L I ++L G + D ++ Y T +G+ +++ Sbjct: 527 EVKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586 Query: 441 LVDGDVVVVKSSNSCGFYRLI 461 ++ V+++K+S +I Sbjct: 587 RMEK-VILLKASRGTALEDII 606 >gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans C54] Length = 954 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 195/442 (44%), Gaps = 21/442 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S D+R I E F A+ G ++D H+++ A ++GA + ++ S+P Sbjct: 515 VKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERGACA----AVVAHAVPESSLPQL 570 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143 + D AL ++ A R R K ++A+TGS GKTTTKEM++ A G+ Sbjct: 571 VLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGNL 630 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLT+ R+ + +FELGM+H GEI L + P +A++T H + Sbjct: 631 NNDIGVPLTVLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVALVTNAQREHQEFMHTV 690 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A L G D+ + + + FG D + Sbjct: 691 EAVALENGAAIAALPADGVAVYPGDEPYAAIW---DRLAAPRRALRFGLQPGLDVYAEQI 747 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + V S ++ G H +N L + A +D A++AL+ F P Sbjct: 748 LADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAGFSPV 807 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + + + LID++YNANP S++AAI VL++I+ G R+ VLGDM E+G+ Sbjct: 808 AGRMQYKKLSDG---TLLIDDTYNANPDSVRAAIDVLARIA----GTRVLVLGDMGEVGD 860 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H ++ + + G A A H ++D + ++ Sbjct: 861 NGPAMHEEVGNYARELGLDALITLGDASRAAAAAFGTGAHA--CASVDEVVAALRGLRAS 918 Query: 444 GDVVVVKSSNSCGFYRLINLLL 465 V++K S R++ + Sbjct: 919 --CVLIKGSRFMRMERVVTAFI 938 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 89/489 (18%), Positives = 157/489 (32%), Gaps = 50/489 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +P T + + + +DSR I P + F A G DG +I A+ Sbjct: 9 SPAATVEQAVAWLHSRVSLTA------HLKLDSREIEPGDVFVACPGLSSDGRLYIEKAL 62 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115 GA V+ A+I + P+ V + L +L R +T ++A+TG Sbjct: 63 ALGASAVLFEAPATAAIEAAAAAGDTPMLPVTGLRALLGELGDTWYGRPSSTLAVVAVTG 122 Query: 116 SVGKTTTKEMLTIALSSIKKTY----------ACIGSYNNHIGVP-----LTLARMPVDV 160 + GKT++ + + AL K + H+ P L D Sbjct: 123 TNGKTSSVQWIAHALGRNDKPCGTIGTLGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDA 182 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + S +G + VR +A T + HL +E A Sbjct: 183 GAKAVAMEASSIGIEQGRMDGVRVALAAYTNLTRDHLDYHGTME-RYEAAKASLFRWPGL 241 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQG 278 +N DD L A A YS + R + ++ + Sbjct: 242 SAAVVNADDEAGRRLIASLPADLSVMGYSLSADPAIPAAMRARDLQATAQGQIFTLVSPH 301 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 ++V +G H N+L+ G++ L + L+ P +GR + Sbjct: 302 GEAQIVTRLLGAHNVSNLLLVAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQ 361 Query: 339 FT-----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 L+ Y+ P S+ A+ L ++ GR + V G G + Sbjct: 362 AHAGRGALVVVDYSHTPDSLARALMALRPVAQARAGRLVCVFG----CGGDRDAGKRPEM 417 Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ HV +S + + + +P S+ V + + Sbjct: 418 GRIAAELADHVVVSSDNPRSESPDAIVAQILAGIPASVAVEVQVDRARAIMQAIWASAPE 477 Query: 445 DVVVV--KS 451 DVV++ K Sbjct: 478 DVVLLAGKG 486 >gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides WS8N] gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter sphaeroides WS8N] Length = 477 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 178/475 (37%), Positives = 248/475 (52%), Gaps = 16/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT + A G+SID+RS+ P + F A+ DGH F+ A Sbjct: 1 MTPLWTSDE---AAAATGGCATRAFAATGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGKT Sbjct: 57 LARGAAAALVSR--RPGGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALG+ +FG++ +AD++L + E + G + G H A N L TL Sbjct: 235 ALGV-PAVTFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357 L D+ A L ++ P GRG R R AL+ F LID+++NANPASM A++ Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353 Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G + Sbjct: 354 ELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL +ALPR + ET L + + GD+V+VK S +++ L + Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468 >gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium vanbaalenii PYR-1] gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium vanbaalenii PYR-1] Length = 526 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 207/498 (41%), Gaps = 38/498 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M + + + + + G + + V G + DSR++ P F A+ G DGHD Sbjct: 1 MIAM-SLARIAEIVGGRLADVSDEDAARTVVTGTVEFDSRAVTPGGLFLALPGARSDGHD 59 Query: 56 FILHAVQK-----------GAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 F AV G VVV+ A+ G+ + VD A+ Sbjct: 60 FAATAVAAGAVGVLAARPVGVPAVVVDPVRPDPAAPGTAGVLEHDVDGSGAAVLAALARL 119 Query: 103 RLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R Sbjct: 120 ASAVAAELVAGGLTIIGITGSSGKTSTKDLIAAVLAPLGEVVAPPGSFNNELGHPWTVLR 179 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 D+ + E+ H G I L + P IAV+ + AHL F E IA+ K+E+ + Sbjct: 180 ATRSTDYLVLEMSARHPGNIAALARIAVPSIAVVLNVGTAHLGEFGSREVIAATKSELPQ 239 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + ++G + LN DD + K+ A ++ G + + Sbjct: 240 SVPESGVVILNADDPAVAAMADKTAARVVRVGR--GAEALDVCADGVSLDALARPSFTLH 297 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + V G H N L + A + AL+ P R + Sbjct: 298 TGAADVPVTLAVHGDHQVSNALCAAAVALECGATPEQVAAALATAGPV--SRHRMQVTAR 355 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLA 393 + T+I+++YNANP SM+A + L+ +S G +GR AVLG+M E+G+ + + H + Sbjct: 356 EDGVTVINDAYNANPDSMRAGLKALAWMSRGGASKGRSWAVLGEMAELGDDAITEHDRIG 415 Query: 394 EVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++S + + G + A+ D +++ L GDVV Sbjct: 416 RLAVRLDVSRLIVVGSGRPMSAMLHGAVMEGSFGSEAIPVADTDAALEILRAELRPGDVV 475 Query: 448 VVKSSNSCGFYRLINLLL 465 +VK+SNS G L + L+ Sbjct: 476 LVKASNSAGLGALADALV 493 >gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 115/440 (26%), Positives = 186/440 (42%), Gaps = 13/440 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ISIDSR++ + F AIKG ++DGH F+ + KG VV+ + + + P + Sbjct: 28 FKNISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVI-KKGMQRLLPSNFPYW 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+D A KLA+ R + I+AITGSVGKTTTKEM+ L+ + + ++NN Sbjct: 87 VVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNE 146 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IGV LT+ ++ + E+GM LG+I L+ P IAVIT I AH+ + I Sbjct: 147 IGVGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNI 206 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 AK EI + L G + + +D F E +S + + + + Sbjct: 207 THAKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLR 266 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + + G+H A N L + L I S Sbjct: 267 GFYNPSKKTILIEENTFEISLEGFHNASNFLFAYAVSKELG------IDFASFNKFDFVS 320 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 L T+ DESYNA+P S+KA I L + + G M E+G+ S+ Sbjct: 321 FGGRNKILKSLKTTIYDESYNASPESVKACIKNL----LEKPRNKFFIFGSMQELGKESE 376 Query: 387 SFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 +H ++ +++ +I + + L + + I S G Sbjct: 377 KYHKEIFNLINNSDIEKCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTKKG 436 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D +++K S ++I L+ Sbjct: 437 DSILIKGSRCWQLEKIIELI 456 >gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC 43183] gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC 43183] Length = 843 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 113/491 (23%), Positives = 203/491 (41%), Gaps = 36/491 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T D+ + I IG P ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YTIEDIARIIGARRIGDRP-AAIDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIR 57 Query: 59 HAVQKGAGLVVVNTDMVASIG--------------------SLSIPVFGVDDVLGALNKL 98 +G VV+ + + +G + + V + L AL KL Sbjct: 58 DLYARGVRNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKL 117 Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 A R R + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M Sbjct: 118 AEQHRDRFQIPVIGITGSNGKTIVKEWLHQLLSPERMITRSPRSYNSQIGVPLSVWQMSE 177 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + I E G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + Sbjct: 178 QTELAILEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD 237 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + N DD F KS + +S K + K ++ + + + + Sbjct: 238 ---VVIYNGDDEFINNCVGKSMLAAREIAWSR-KDMERPLYISKVEKQEDSTVISYRYLD 293 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 I +N L L L + + ++ P R + Sbjct: 294 MDNTFTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPV---AMRLEVKEGKNG 350 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 LI++SYN++ S+ A+ L + S +R +L D+ E G+ + + + +A++++ Sbjct: 351 CLLINDSYNSDLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNS 410 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCG 456 I + G + + I + L I + L + +++++K + G Sbjct: 411 RGIERIIGVGNEISSCAARFS--IEKAFYPDTATLIEAIGRGELRLENEIILIKGARKFG 468 Query: 457 FYRLINLLLEE 467 F L L ++ Sbjct: 469 FDALTEALEKK 479 >gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] Length = 445 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 124/469 (26%), Positives = 188/469 (40%), Gaps = 29/469 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + ++ L ++ P G +IDSR + E F A+ DGH +I A Sbjct: 1 MKKICSWAQLAALHPEATLLGEPGATFAGFAIDSRRVQSGELFIALATASDDGHAYIADA 60 Query: 61 VQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +KGA +V+ + + V D L AL LA R + + ++A+TGS G Sbjct: 61 CRKGAAGALVHQLPADHQQLIDAGHALLVVPDTLAALAILAANWRQQWEFPVVAVTGSSG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT L + T G+YNNHIG+PL++ P D G+FELGMS GEI L Sbjct: 121 KTTVSACLRTLFPTSAGTT---GNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDAL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L++P I +IT + AH+ I AK E+ D + L + Sbjct: 178 AELLQPQIGLITNVGSAHIGKLGSFAAILEAKLELARHCSCLI------VDGDGQELLDR 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQN 295 + S G + + + E + S + M +N Sbjct: 232 ARQRHQDV-LSVGFTAGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L+ + L D L R + +R N T I + YN+NP S++A Sbjct: 291 SLLAIAAGLKLGLDQAALQAGLRRVQLPPLRWELHRRGGN----TYIFDCYNSNPGSLRA 346 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ H G R+AVLG+M E+G S+ H +A + N V G L Sbjct: 347 ALEDF----SHYPGYRVAVLGEMRELGAFSEREHRKVASAI---NCDLVLTYGDEARFLA 399 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 D L I + T++ + + + VV+VK S RL++ L Sbjct: 400 DELGADI-ATHCPTLEDVVARLANC--QNAVVLVKGSRGNQMERLLDAL 445 >gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Rhodobacter sphaeroides KD131] gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase precursor [Rhodobacter sphaeroides KD131] Length = 477 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 179/475 (37%), Positives = 248/475 (52%), Gaps = 16/475 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PLWT + A G+SID+RS+ P + F A+ DGH F+ A Sbjct: 1 MTPLWTSDE---AAAATGGCATRAFAATGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA +V+ P+ V DVL L L AAR R++A ++ +TGSVGKT Sbjct: 57 LARGAAAALVSR--CPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 +TKEML L +A SYNNH GVPLTLARMP DVDF + E+GM+H GEI L+ Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RPH+A+ITT+A AHL F + IA KA I EGLE G L +L A++ Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAA 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ALG+ +FG+S +AD++L + E + G + G H A N L TL Sbjct: 235 ALGV-PAVTFGQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357 L D+ A L ++ P GRG R R AL+ F LID+++NANPASM A++ Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353 Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 +L+ ++P GRRIA+LGDM E+G H +A+ +L I+ V G + Sbjct: 354 ELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 AL +ALPR + ET L + + GD+V+VK S +++ L + Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468 >gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster bacterium] Length = 419 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 46/460 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ + ++ +NG+ D+R F A+ G ++D HD+I HA + GA Sbjct: 6 LKEIAKIFNSQALLGS-DIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + + ++PV VDD AL+ +A K T++AITGS GKTTTK ML Sbjct: 65 AIIASKQV-----KTNLPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNML 119 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+ T G+ NNH+GVP+TL + F + E+G +HLGEI+ L + PHI Sbjct: 120 ANILNLKAPTLKTQGNLNNHLGVPMTLLMLEPKHQFAVIEMGANHLGEIKHLRDITHPHI 179 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV+T AH+ F G + AK EI+ + + T Sbjct: 180 AVVTNTLDAHIGEFGGFNNLVKAKGEIYHTNSQNI----------------------VNT 217 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +F + + ++ ++ + + V +G H +N L L Sbjct: 218 NTTFTGDISFGKDGDVFASNINSHQFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYAL 277 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D++T K L ++GR +++ T+ID++YNA+P SM+AAI L Sbjct: 278 DIDINTIKKGLEKTQAEKGRLT----IIHRQGLTIIDDTYNASPQSMRAAIDALLSF--- 330 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 +G +IAVLG M E+G S++FH + ++ ++ + G + Sbjct: 331 -DGEKIAVLGSMAELGNDSKTFHQQIGKLA-KVSLDTFYTYGELAKDYG--------GIH 380 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 E + L + I + V+VK S L+ LL + Sbjct: 381 FEDLHKLSMHILTKY-SNATVLVKGSRMVKLDHLVQLLQK 419 >gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus sp. RS-1] gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseiflexus sp. RS-1] Length = 490 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 123/502 (24%), Positives = 204/502 (40%), Gaps = 49/502 (9%) Query: 2 NPLWTFHDLLQAIQGHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54 + ++L+ +Q + P Q + IDSR + F A++G DGH Sbjct: 4 TAVLQLDEVLRGVQAEADRRKPSLPPALMQVAFSEAVIDSRQATSECLFVALRGERVDGH 63 Query: 55 DFILH-------------------AVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVL 92 +F+ ++++ V++ + + S+ + VDD Sbjct: 64 EFLADAAARGARGALVRRDKLSNLSLER--PYAVIDPVTGEGLEQATPDSVLLIAVDDPQ 121 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 ALN+LA R + +I +TGSVGKT+TKE+ L +T SYN+ +P+ Sbjct: 122 AALNRLAAYHRGKYHPVVIGVTGSVGKTSTKEVTASVLQRSFRTLKSPRSYNSEASLPIV 181 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 L ++ D + E+GM GEI L L RP + ++T + P+HL IE I AK+E Sbjct: 182 LLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSE 241 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSW 271 + + L G LN DD + + A + +G AD + + Sbjct: 242 LPQALPDDGFAILNIDDLRVRAMAEVTRA----RPFFYGLDPAADLWADSIESRGLQGIS 297 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V QG + + +G H L +L + + I L + Sbjct: 298 FRVHYQGDAFYLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRDESAQLRLL---- 353 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 TLID++YNA+PASM AA+++ EGRRIA+LGDM E+G + + H Sbjct: 354 AVPGVNQTTLIDDTYNASPASMLAALNL----LAELEGRRIAILGDMLELGSVEEEAHRR 409 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVV 447 + ++ + G + D ++ V + D S L GD+V Sbjct: 410 VGARVAEV-ARFLITVGRRARWIADEALQAGMAPDQVWSVDDNDEAADLAMSCLAPGDIV 468 Query: 448 VVKSSNSCGFYRLINLLLEEFP 469 ++K S ++ L + P Sbjct: 469 LIKGSRGMLMESIVARLQQRRP 490 >gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1] gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1] Length = 611 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 206/442 (46%), Gaps = 35/442 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 201 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTNIKDKR 251 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + + LA R + +I ITGS GKTTTK+++ LS+ KT G+YN Sbjct: 252 VVKVIDTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYN 311 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 371 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D+ +L K G ++N D+++ ++ Sbjct: 372 NVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNK-----------VGFNENNDYKIESYE 420 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ S + + E +G H N + + + + + K L Sbjct: 421 FSNKGSKFVLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 476 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 477 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 530 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 ++HID+ L I ++L G + D ++ Y T +G+ +++ Sbjct: 531 EINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 590 Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462 ++ V+++K+S +I Sbjct: 591 KMEK-VILLKASRGTALEDIIK 611 >gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 417 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 114/461 (24%), Positives = 186/461 (40%), Gaps = 48/461 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + ++ + D+R F A+ G ++D HD+I A Q GA Sbjct: 5 TTSTIAKILK---TDCTTNVEFKDVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V N + + +P VDD ALN +A K +IAITGS GKTTTK M Sbjct: 62 VAIVANKPV-----NNQLPTLVVDDTQIALNTIASWHLKNIKPIVIAITGSNGKTTTKNM 116 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L+ T G+ NNH+GVP+TL + + + E+G +HLGEI L LV P+ Sbjct: 117 LANILNLQAPTLKTQGNLNNHLGVPMTLLTLEEQHQYAVIEMGANHLGEIAHLCSLVNPN 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA++T AH+ F G + + AK EI+ + Sbjct: 177 IAIVTNTLDAHIGEFGGFDNLVKAKGEIYSNNSHNI----------------------VN 214 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T +F + + + ++ + + + V + IG H +N L Sbjct: 215 TQDTFTGDVSFGKGGDIFASKLVNNKFDLNIYKQKISVTLNLIGTHNIENALAASTCAYA 274 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D++ + L +N F +ID++YNANP S A+ L S Sbjct: 275 LGIDINLIKQGLE----VTKAEHGRLEVINTKKFRIIDDTYNANPHSTTTALKALQDFS- 329 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G +I VLG M E+G S+ H+ + ++ + G Sbjct: 330 ---GEKIVVLGAMRELGNDSEELHLKIGQLAKKSA-DTFYSYGKLTQHYY--------GI 377 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++ L + ++ V++K S + L++LL + Sbjct: 378 HFDSKQQLANHLLAN-HVHATVLIKGSRTVKMNELVDLLKK 417 >gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella buccae ATCC 33574] gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella buccae ATCC 33574] Length = 831 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 185/471 (39%), Gaps = 9/471 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + + + DSRS+ + FFA+K DGH++I Sbjct: 1 MT--YTIEKVTTLIGARRYG-DKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIP 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + V + L AL +LA R ++ ITGS Sbjct: 58 ELYRRGVKNFVVTEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ M + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMCVTRSPRSYNSQIGVPLSVWLMNEQTEVGVFEAGISQPGEMLA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T I AH NF + K +F + Sbjct: 178 LRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFHDARTVVYNADDELVERVLAQME 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G ++ + ++S V K E + I + ++ Sbjct: 238 STLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDASIC 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ + + E R Q TLI++SYN++ S+ A+ Sbjct: 298 NSIICAIVALRIGIAPDELDRRMQGIEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIAL 357 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + GE + + +++++ + G + A + Sbjct: 358 DFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVSDLARERGVVKFIGIGPEICAQSER 417 Query: 418 LPRSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + +++ + + SL +V+++K + GF RL LL+++ Sbjct: 418 IQIAEK-DFFGSVEEFIVSDVFRSLR-DEVILLKGARRFGFDRLTELLVKK 466 >gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17] gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17] Length = 831 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 185/471 (39%), Gaps = 9/471 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + + + DSRS+ + FFA+K DGH++I Sbjct: 1 MT--YTIEKVTTLIGARRYG-DKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIP 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + V + L AL +LA R ++ ITGS Sbjct: 58 ELYRRGVKNFVVTEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ M + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMCVTRSPRSYNSQIGVPLSVWLMNEQTEVGVFEAGISQPGEMLA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T I AH NF + K +F + Sbjct: 178 LRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFHDARTVVYNADDELVERVLAQME 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G ++ + ++S V K E + I + ++ Sbjct: 238 STLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDASIC 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ + + E R Q TLI++SYN++ S+ A+ Sbjct: 298 NSIICAIVALRIGIAPDELDRRMQGIEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIAL 357 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + GE + + +++++ + G + A + Sbjct: 358 DFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVSDLARERGVVKFIGIGPEICAQSER 417 Query: 418 LPRSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + +++ + + SL +V+++K + GF RL LL+++ Sbjct: 418 IQIAEK-DFFGSVEEFIVSDVFRSLR-DEVILLKGARRFGFDRLTELLVKK 466 >gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 447 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 128/467 (27%), Positives = 194/467 (41%), Gaps = 24/467 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL + ++ + G + V +DSR F A G H DGH + Sbjct: 1 MIPL-SVGEIAAVVGGT-VSGDGSVTVTAPAVLDSRRAQQGSLFLAFAGEHVDGHAYAEQ 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 A Q GA V+ + +P +D AL LAV RLR + T+ +TGS Sbjct: 59 AGQAGAAAVLGSRPTP-------LPTVVAEDTQAALQALAVHVVGRLRDRLTVFGVTGSQ 111 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L LSS +T A GS+NN +GVPLT+ R F E+G HLG+I Sbjct: 112 GKTSTKDLLAAVLSSAGQTIATFGSFNNELGVPLTMLRTEATTRFLALEMGARHLGDISE 171 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT LV P IAV+ + AHL F E IA AK E+ +GL GT LN DD +++ Sbjct: 172 LTGLVAPDIAVVLNVGQAHLGEFGSREAIAKAKGELVQGLAPGGTAVLNADDPRVAAMRS 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + +FG++++AD + + V Sbjct: 232 LTDRPVL----TFGRTEHADVRALGLALDRLGRPSFTLRTADASAPVSLPHVGAHQALNA 287 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ A+ R + L+++SYNANP S +AA+ Sbjct: 288 SAAVAAGLVAGVPLDTAAAMLATASLSRWRMEPRDLASGA--ILLNDSYNANPDSTRAAL 345 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 ++ R IAVLG+M E+G+ S+ +H + E + V G L + + Sbjct: 346 DA---LAAIEGRRHIAVLGEMLELGDDSEVWHRAVGEYAAAR-ADVVVTVGKAALRIAEG 401 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 ++++ L DVV+VK+S + L Sbjct: 402 A--GDRAVALADNGAAVHWLRNHLAADDVVLVKASRGARLDEVAAAL 446 >gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis W83] gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis W83] Length = 420 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 119/432 (27%), Positives = 193/432 (44%), Gaps = 16/432 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR FFA+KG +DG+ F A++KG L VV+ V VD Sbjct: 2 VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVV----RDERYLLVD 57 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL +LA R +I ITG+ GKTTTKE++ LS+ G+ NNHIGV Sbjct: 58 DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 117 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + I E+G + G+I LT + RP+ +IT I AHL F +E + Sbjct: 118 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNIGRAHLQGFGSLEGVRRT 177 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ + G I D S+G S +A + R + Sbjct: 178 KGELYDFIRAEGGILFLNFDDDT-----LIDMSQGLQSVSYGTSADATVRGRIVANNTPY 232 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 +++ V + +G + N L + + + AL+ + P R Sbjct: 233 LCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKP---SNNR 289 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + +LI ++YNANP SM+ A+ + H + + +LGDM E+G S+ H Sbjct: 290 SQWIETERGNSLIVDAYNANPVSMRVALDNFDSL--HTDKPLVLILGDMNELGAESKREH 347 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L E ++ + L G AL D+ P L ++++ + ++++ Sbjct: 348 MALLERINTGRYRQILLCGPCFTALADSFPGGATG--FADNAVLEEYLKAHSIHDSLILL 405 Query: 450 KSSNSCGFYRLI 461 K S+ ++I Sbjct: 406 KGSHGIHLEKII 417 >gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] Length = 481 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 119/476 (25%), Positives = 192/476 (40%), Gaps = 20/476 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + D+L+A + G V +++DSR A AF A G DG+ F A+ + Sbjct: 4 MSVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARA 63 Query: 65 AGLVVVN---TDMVASIGSLSIPVFGV--DDVLGALNKLAVAARL-RSKATIIAITGSVG 118 A +V+ + + DD L +LA A R + T++ +TGSVG Sbjct: 64 ATVVLTGPAPKGCAEAAERHGCALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVTGSVG 123 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+ML L + + +A G++NN IG+PLTL + + E+GM+H GE+ L Sbjct: 124 KTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGELSRL 183 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSF 231 RP +A+IT + +H+ E IA AKAEI G+ D+ Sbjct: 184 AACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDND 243 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 F L +A + D + +L +G Sbjct: 244 FAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMP 303 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + L ++I AL R G +ID+SYNA+P+ Sbjct: 304 GRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVVTAPGRPRMIDDSYNASPS 363 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 S+ AA+ VL ++ GRR+AVLG++ E+G+ + H + + + + L G H Sbjct: 364 SVAAALDVLCSMA--CTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKPLDLLVLVGTHD 421 Query: 412 LALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 A + + + I L + D+V+ K+S + G R + Sbjct: 422 AAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVLAKASRASGLDRFVK 477 >gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus SK58] gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micrococcus luteus SK58] Length = 504 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 137/493 (27%), Positives = 200/493 (40%), Gaps = 34/493 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFIL 58 M L T + +A+ G P + + DSR + + A G DGHDFI Sbjct: 1 MIAL-TAAQIAEAVSGTLSATLDPATVLVHATPDSREVTAEGTLYVAKPGERADGHDFID 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAIT 114 A+ GA V+ A G+ P V+D + A+ LA R S T+I IT Sbjct: 60 AALGAGAAAVLAERATHAPDGAA-HPAIIVEDAVLAMGALAREIVRRVREHSPTTVIGIT 118 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTK++L L++ T A +GSYN +GVPLT+ R +D + E+G H+G Sbjct: 119 GSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRSLVVEMGADHVGN 178 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I +L +VRP I V+ + AH +F G+ IA K E+ E L G LN DD Sbjct: 179 IAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAG 238 Query: 235 LKAKSHALGIKTI----------------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + A++ A + G D + ++ + Sbjct: 239 MAARTAAPITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPLFDLQVGTDEAA 298 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 V G H N+L D + L P R Sbjct: 299 VRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGP--ASRFRMERTDRADG 356 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+I+++YNANP SM+AA+ L+ + R AVLG+M E+G+ H + E + Sbjct: 357 VTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVR 416 Query: 399 YNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 NI+ + + G L H+ + F+ L GD+V+VKSSN Sbjct: 417 LNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLTEHLRPGDLVLVKSSNG 476 Query: 455 CGF----YRLINL 463 G RL Sbjct: 477 VGLAALGERLATA 489 >gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] Length = 489 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 236/480 (49%), Gaps = 34/480 (7%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LWT ++ A G + V+G+ IDSR + + FFA+KG + DGH ++ A Sbjct: 21 ALWTSEEIAAATGGRASAPFA---VSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFG 77 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA VV P V + AL L AAR R A II +TGS GKT Sbjct: 78 RGAAGAVVEHACFG-------PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGV 130 Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L AL + + + SYNNH+GVPL+LARMP FG+FE+GM+H GE+ LT Sbjct: 131 KEALYAALDRASRGRAHRSVKSYNNHVGVPLSLARMPARTSFGVFEMGMNHAGELAALTR 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPH+A++TTIAPAH+ +F+G E IA AKAEIFEGLE G + D+ FE L+AK+ Sbjct: 191 LVRPHVAIVTTIAPAHIGHFAGEEAIADAKAEIFEGLEPGGVAIIPADNRHFEHLRAKAT 250 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L + + SFG +K+A +L + G + + Sbjct: 251 -LHAERVISFGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAV 309 Query: 301 GIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANPASMKA 355 + D+ A AL+ GRG R+ + G LIDESYNANPASM Sbjct: 310 MAAVEAIGGDLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAV 369 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + L Q R+A+LG M E+G +H +LA ++ + + L G + AL Sbjct: 370 TLRQLGQTPAAR---RVAILGAMRELGADEARYHAELAGPVAEGKVDRLILVGGEMTALA 426 Query: 416 DALPRSIHVHYSETMDGLFLFIQSS-----------LVDGDVVVVKSSNSCGFYRLINLL 464 DAL +S + +D +Q++ + GD ++VK SNS G L+ L Sbjct: 427 DALGKSGSAALAGAID--VAHVQTAAEAAECLAADGVRGGDAILVKGSNSVGLGALVRSL 484 >gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 453 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 103/473 (21%), Positives = 198/473 (41%), Gaps = 29/473 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDF-- 56 M PL ++ + + G I + +S R + P+ + + D + Sbjct: 1 MKPLK-ITEIAKVVGGKLINCNKDIILKSVST--RVFGVKPEYLYIYLTYSKSD---YNP 54 Query: 57 ---ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 + A++ GA ++V +P V++ AL L R + +IA+ Sbjct: 55 NPDVEQAIKNGAAAIMV-----PCKIDCKVPQIIVENTDTALRTLCKHYRKKFDIPVIAV 109 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TG+ GKT+TK+++ + LS T+ + + N+ IGVP+T ++ + E+G+ G Sbjct: 110 TGTSGKTSTKDLIALVLSERFNTHKTLSNVNDLIGVPMTTLQINDTHQISVIEIGLRSYG 169 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 I+ +VRP I VIT+I AH+S+F E I AK E+ +K + +N DD Sbjct: 170 HIKKGVDIVRPSIGVITSIGTAHISSFGSKENIMKAKMEVATYFDKNDILIINGDDPLLS 229 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +K K + + ++ G+ D + + + +G+ G H Sbjct: 230 TIKEKPYKIIRISLNGKGEYNAKDVR----DLGEKGVEFKCDYKGEEHLFKLKVPGIHNV 285 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N + + I + +VD + + F P R + N +I + Y + SM Sbjct: 286 YNAMFAIAIGDLFDIEVDDVKRGIVKFQPDNLRVNIVKMKNNAK---IILDCYTSELDSM 342 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 KA I+V + G ++IAVLG M G L++ H ++ + + G + Sbjct: 343 KAGINV---LKSFGGNKKIAVLGSMYGCGNLTEEIHREIGRYVI-GKCDILVTVGGNARY 398 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + + ET + ++++ + DV+++ ++ N LL+ Sbjct: 399 INEEAKDKLEGKHCETKEEACSYLKNIIQKDDVILINGGRILKLEQIANYLLQ 451 >gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia ambifaria AMMD] gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia ambifaria AMMD] Length = 468 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 113/476 (23%), Positives = 194/476 (40%), Gaps = 27/476 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G ++ P +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118 + + + + + V+ + AL LA R R ++A+TGS G Sbjct: 60 AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113 Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 KTT KEM+ ++ A G+ NN IGVPLTL R+ + ELGM+H GE Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L L P +A++ H + +E +A A + L G DD++ + Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIW 233 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + A I F + + + ++ V +G H A+N Sbjct: 234 R---VAATGNPILDFALHDGERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354 L ++ + L F P +GR + + + T++D++YNANP SM+ Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMR 350 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + L + ++ V+VK S R+++ L + Sbjct: 407 CTAYGDTAR--HFGDVGALLTALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458 >gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Calditerrivibrio nitroreducens DSM 19672] Length = 446 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 201/438 (45%), Gaps = 24/438 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+IDSR + FFA KG DGH +I A+ KGA V+ + + P+ V Sbjct: 26 ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVI---TDENYYDANKPLVLVK 82 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L A+ +L + I ITGSVGKT+TK +L++ LS K Y ++NN +GV Sbjct: 83 DTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNNELGV 142 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + + + + + IFE+G ++ GEI+ L+ ++P + +IT + +H+ F ++EI Sbjct: 143 AIVTSNIDLGAQYAIFEIGTNNPGEIKSLSEFLQPDVGIITGVGHSHIGRFGSLKEITKE 202 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K I EG++K G +++N + + + FG SK++D + + E Sbjct: 203 KLAISEGVKKDGVLWINDGVDT-----SYYNFPEGINVKKFGFSKDSDIYIEELNVEKEV 257 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 +++ + + H A N L + + + + L F P EGRG Sbjct: 258 NFIVNFNNFRYC-FRINHPFSHFAVNALPAIALAFENQFHYEEIYRGLDKFVPVEGRG-- 314 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +I+++YNA ++ +A+ LS+I + IA+LG+M E+ + + Sbjct: 315 --EIIRTQNKIIINDTYNAGFEAVLSAVENLSKIDAPKK---IAILGEMAEIDGFEEKLY 369 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-V 448 L + N + +L G +V Y + L + ++ GD V + Sbjct: 370 SRLKNEVEKRNDIYFYLVGESFKD----FQSLENVSYFKDKSELIN---ADILKGDGVYL 422 Query: 449 VKSSNSCGFYRLINLLLE 466 VK+S S F L+ L + Sbjct: 423 VKASRSKRFEELVEYLKK 440 >gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis DSM 17361] gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis DSM 17361] Length = 825 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 190/471 (40%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + + + DSRS+ + FFA+K DGH++I Sbjct: 1 MT--YTIEKVATLIGARRYGK-HKADIGFLLTDSRSLCFPEETLFFALKTKRNDGHNYIA 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + V D L AL +LA R I+ ITGS Sbjct: 58 DLYRRGVRNFVVTDVPNNYDSAYSGANFLKVIDTLEALQRLAERHRDAFDIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L +S SYN+ +GVPL++ M GIFE G+S GE+ Sbjct: 118 GKTMVKEWLYQLMSPDMYVTRSPRSYNSQVGVPLSVWLMDKQTRLGIFEAGISEKGEMSA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NF EE KA +F TI + DD + A Sbjct: 178 LRDIIQPTIAVLTNLGSAHQENFESAEEKCREKAILFH---DAKTIVYHADDKIVAGVVA 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 G + +S + + K+ + + + G I N + Sbjct: 235 SLDYRGERLYWSTSDRQAPMYIKAVEKKETAATITYIYKGGIENWYSIPFIDDASVTNSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + I L D D + + P R + TLI++SYN++ S+ A+ Sbjct: 295 VCATIALHLGLDADKLDERMLQLEPV---AMRLEVKEGRHGCTLINDSYNSDFNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H RR +L D+ + G + D+ E+ + + + G + + D Sbjct: 352 DFMNRRPDHQGRRRTLILSDIFQSGVEPARLYRDVGELAAKRGVEKLIGIGPSISSYADE 411 Query: 418 LPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + T+ + L +V+++K + GF R+ LL+++ Sbjct: 412 IHTQEK-YCFSTVADFIHSPVFKGLR-NEVILLKGARRFGFDRITELLVQK 460 >gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] Length = 450 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 128/455 (28%), Positives = 202/455 (44%), Gaps = 23/455 (5%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 I +N I+ DSR+ + FFA+ G ++D HDF+ + KGA VV D + Sbjct: 14 RLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSRGDCAS 73 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 G VDD L AL LA A R + + ITGS GKTT KEML L + Sbjct: 74 FSG-----CLKVDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLASILRTAHGA 128 Query: 137 Y---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 A G++NNHIG+PLTL + + E+GM+H GE+ LT + P++A++ Sbjct: 129 DAVLATAGNFNNHIGLPLTLLNLREPHRHAVIEMGMNHAGELATLTRIAAPNVALVNNAM 188 Query: 194 PAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 AH+ F+G+++IA AKAEI++GL + G L +D + +A + +FG Sbjct: 189 RAHIGCGFNGVDDIARAKAEIYQGLPENGIAILPAEDDHLAIFQA---TVSAFKTLTFG- 244 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + D + S ++ G V G H N + Sbjct: 245 ATVGDVHAENIALEALSSTFDLVYNGNRQAVQLPVAGKHNISNACAAAALAIAGGLRQPE 304 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + L+ F +GR + ++D++YNANP SMKAA+ VL+++ R+ Sbjct: 305 IARGLAAFSNIKGR---LQRKNGIRQTLILDDTYNANPDSMKAALDVLAKLPA----PRV 357 Query: 373 AVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431 V+GDM E+GE + H ++ I + + G + + + + + D Sbjct: 358 FVMGDMGELGEDEAPKMHEEIGIYARDLGIEYAYFVGDNSVQAAEKF--GGNGLWFADKD 415 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 L + L + V+VK S ++ LL Sbjct: 416 PLIQVLAHDLPERASVLVKGSRFMQMEEVVAALLA 450 >gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 191/465 (41%), Gaps = 16/465 (3%) Query: 5 WTFHDLLQAIQG--HSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 ++ +L + + ISIDSR+ + F AIKG ++DGH FI + Sbjct: 3 FSLSELNDVLGNIRNLRESKSDFLSFKNISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG VV+ + + + P + V+D A KLA+ R + I+AITGSVGKTT Sbjct: 63 NKGVKSVVI-KKGMQRLLPSNFPYWAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTT 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEM+ L+ + + ++NN IGV LT+ ++ + E+GM LG+I L+ Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATDIEDKVLVLEMGMRGLGQIENLSKY 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAVIT I AH+ + I AK EI + L G + + +D F E +S Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITHAKCEISKFLNPEGVVIIPANDPFLEKTLKESWK 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + + + + + + + G+H A N L Sbjct: 242 GRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFEISLEGFHNASNFLFAYA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L I S L T+ DESYNA+P S+KA I L Sbjct: 302 VSKELG------IDFASFNKFDFVSFGGRNKILKSLKTTIYDESYNASPESVKACIKNL- 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419 + + G M E+G+ S+ +H ++ +++ +I + + L Sbjct: 355 ---LEKPRNKFFIFGSMQELGKESEKYHKEIFNLINNSDIEKCLFICEKKNEKNYTNYLK 411 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + I S GD +++K S ++I L+ Sbjct: 412 DKKKFLVLNNIKDVPQEINKSTKKGDSILIKGSRCWQLEKIIELI 456 >gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] Length = 478 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 133/479 (27%), Positives = 213/479 (44%), Gaps = 24/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + D++++ + + + IDSR + F A G DG+ +I A Sbjct: 1 MICM-SARDVVESTGAMLLVEGKRPLAGEVEIDSRRVGEGSLFVAFAGEKVDGNSYIDAA 59 Query: 61 VQKGAGLVVVN----TDMVASIGSLSIPVFGV--DDVLGALNKLAVAARL-RSKATIIAI 113 + GA +V + + + + DD L +LA A R T++A+ Sbjct: 60 LDAGAAVVCASVEPAQATLEHARRVDATLLRAEGDDCEEFLLRLAGAWRALHQDWTVVAV 119 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKTTTK+ML +++ ++ +A G++NN IG+P+T+ P D + + E GM+H G Sbjct: 120 TGSVGKTTTKDMLRAGIATQRRVHATAGNHNNLIGLPMTILSAPKDAEVLVCECGMNHKG 179 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN----YDD 229 EI LT RP IAVIT + +H+ E IA AKAEI EG+E G I Sbjct: 180 EILRLTRCCRPTIAVITNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGG 239 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287 F + K + G + + E + V G V Sbjct: 240 DFTSFVSEKFARPKGIDVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSV 299 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G + LM L +++L D D A+ A++ P R +ID+SYN Sbjct: 300 PGRVAVSDALMALEAITLLGLDRDMALDAIATMPPTRMRLSVLHAV---CGARIIDDSYN 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+P+SM AA+ VLS++ GRRIA+LG++ E+G+ + H + ++ I V Sbjct: 357 ASPSSMAAALDVLSRMP--TRGRRIAILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFV 414 Query: 408 GFH-VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 G + +A + E+++ + I L D D V+VK+S + G + Sbjct: 415 GKDAAREMAEAAKTMGLSEDAIELVESVEDVMKIIPPILKDTDTVLVKASRAAGLDAFV 473 >gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 503 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 201/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DTMIDAVGNDTRTLADGSLYVALRGERFDGHDFATEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+V+ + +LS+P VD+ AL ++A + ++A+TGS GKT Sbjct: 58 VARGASGVLVDR----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + + ++ + +G +A+ R+ + + + + ++ G H Sbjct: 234 EQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAQIALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIADGLAQARAVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL-----------VDGD----------------- 445 A V T L +Q+ L G Sbjct: 407 AAQAFGEGARV--FATHAELIDALQADLVDATSQRQQVPQHGSGNTQEHAVIHQQQSPST 464 Query: 446 ---------VVVVKSSNSCGFYRLINLLLE 466 +++K S R++ LL Sbjct: 465 NALPGVASITILIKGSRGSAMDRVVTALLA 494 >gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM 16973] gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM 16973] Length = 824 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 111/469 (23%), Positives = 183/469 (39%), Gaps = 12/469 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + I DSRS+ + FFA+K DGH +I Sbjct: 1 MI--YTIDRITTLINAERYGEA-DARIGFILTDSRSLCFPEETLFFALKSDRNDGHRYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++G V +S V D L AL LA R II ITGS G Sbjct: 58 ELYRRGVRNFAVEVLPDSSSSYTDANFLKVADTLKALQMLAKKHRETFHIPIIGITGSNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L L + SYN+ IGVPL++ + + G+FE G+S E+ L Sbjct: 118 KTMVKEWLYQLLMPERFVTRSPRSYNSQIGVPLSVWLLNENTQIGLFEAGISRPKEMDAL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++RP I V+TTI AH NF+ IEE K +F + N L ++ Sbjct: 178 REIIRPTIGVLTTIGTAHQENFASIEEKCREKLRLFRHAQTIVYCTDNA---LTARLISE 234 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G +S + R KQ + + I +N + Sbjct: 235 ESLEGEPIAWSTKDENAQLYVSRIEKQAEHTTVSYRYKNHIEGQYTLPFIDDASVENSIT 294 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L K ++ P R Q TLI++SYN++ S+ A+ Sbjct: 295 CTAVALYLGIAPAALAKRMAHLEPV---AMRLEVKEGQHGCTLINDSYNSDIHSLDIALD 351 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +++ H +R +L D+ + G + +++ + + + G + A D++ Sbjct: 352 FMNRRPDHKGRKRTLILSDIEQTGRKPADLYREVSHLAAKRRVEKFIGIGRQLCAHADSI 411 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + L +V+++K + GF RL +LL+++ Sbjct: 412 GITDKCFFPDCESFIHSEAFDKLR-NEVILIKGARRFGFDRLTDLLVKK 459 >gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] Length = 824 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 113/471 (23%), Positives = 197/471 (41%), Gaps = 16/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G V I DSRS+ + FFA+K DGH++I Sbjct: 1 MI--YTIEKVTTLIGARRYG-DRDCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIA 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + + V + L AL +LA R I+ ITGS Sbjct: 58 ELYRRGVRNFVVSDVPNNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ + + GIFE G+S GE+ Sbjct: 118 GKTIVKEWLYQLLSDDMYVTRSPRSYNSQIGVPLSVWLLNKQTEIGIFEAGISEPGEMLA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NF E K +F + DD Sbjct: 178 LRDIIQPTIAVLTNLGSAHQENFKSKEAKCREKLILFHDAKTIVYNM---DDEIINDTVE 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G K +SF K+ A ++ ++ + + + K + + I N + Sbjct: 235 SYNYSGEKITWSF-KNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPFIDEASISNSI 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L D + ++ P R + Q TLI++SYN++ S+ A+ Sbjct: 294 ICAIVTLCLGVSTDVLSRRMAKLEPV---AMRLEVKVGQHGCTLINDSYNSDVNSLDIAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + GE ++ + D++++ + G + A D Sbjct: 351 DFMNRRPDHKGRRHTLILSDIFQSGEKPENLYRDVSDLAYKRGVVKFIGVGPELKAHADQ 410 Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + +++ L + SL +V+++K + GF ++ LL+++ Sbjct: 411 IQIPEKF-FFSSVEQLINSEVFRSLR-DEVILIKGARQFGFDQITELLVQK 459 >gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus mobilis Nb-231] gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus mobilis Nb-231] Length = 453 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 201/470 (42%), Gaps = 25/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ + + L+ + GH G P V G ++DSR I E F A+ G DGHD++ Sbjct: 1 MDAV-SLSRLVADLGGHLRG--PDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSA- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGK 119 A ++ +P + V D G L L R AT I+A+TGS GK Sbjct: 57 ----ARTAGAAAALLERAVPEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TT KEML L+ T A G+YNN +GVPLTL R+ + + ELG S G+IR LT Sbjct: 113 TTVKEMLAAILARHGATLATSGNYNNELGVPLTLCRLQRRHRYAVLELGASAPGQIRRLT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 VRP + VIT PAHL F + +A K E+FE L G +N DD+F L + Sbjct: 173 QWVRPSVGVITNAGPAHLDGFGSVAGVARGKGELFETLPDDGIAVINVDDAFANLWQR-- 230 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG D + + +E++ G+ + V +G H N L + Sbjct: 231 -LARPRRCITFGL----DRRAEVRATTAADGQLELRWDGRVLPVRLPLLGRHNQLNALAS 285 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L L P GR ++D++YNANPAS+ AAI V Sbjct: 286 AATALALELPGAAIRAGLEAMRPVPGRLCWREGIGG---ARILDDTYNANPASLAAAIRV 342 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ RR VLGDM E+GE + H ++ + +++ G A Sbjct: 343 LA----ENSQRRWLVLGDMAELGETAGRLHRRAGQLARAGGVERLFVIGELAAASAAGFG 398 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 + + L + L V++K S S + + L + P Sbjct: 399 LG--AECFDDREALVKALSGGLGPDIAVLIKGSRSAAMDIVADRLAADKP 446 >gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dietzia cinnamea P4] gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dietzia cinnamea P4] Length = 500 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 135/498 (27%), Positives = 207/498 (41%), Gaps = 36/498 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ + G +G P V G + DSR + P F A+ G DGHDF+ Sbjct: 1 MIDL-TLGEIAGIVGGRLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVAR 59 Query: 60 -----------AVQ----KGAGLVV--VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 A + GA +VV V+ ++ + VL AL LA A+ Sbjct: 60 ALDAGAAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAVLTALGALARAS 119 Query: 103 RLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 R ++ +TGS GKT+TK+++ LS+ A GS+NN IG P T R Sbjct: 120 VDRLVADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALRADE 179 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D DF + EL G IR L L P I V+ + AHL F E IA+ K E+ E L Sbjct: 180 DTDFLVLELSARAPGNIRELAALAPPRIGVVLNVGTAHLGEFGSREVIAATKGELVEALP 239 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQ 277 + ++ + + A + + G +AD + + E ++ + Sbjct: 240 DAAHGGVAVLNADDDRVAA-MAGRTSAEVVTVGLGGSADVRAEGVRLDDEVRASFTLVTP 298 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 EV G H N L + DV+ AL R R + Sbjct: 299 RGEAEVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAEAASERRMDVR--VTAD 356 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRR---IAVLGDMCEMGELSQSFHIDLAE 394 T+I++SYNANP SM+AA+ L+ ++ G GR AVLG+M E+GE + H + Sbjct: 357 GITVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAELGEDAVIEHDLIGR 416 Query: 395 VLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 L ++S + + G A+ + T + + S L GD+V+ Sbjct: 417 FLVRLDVSQLVVVGLGRPQRAMFQGAIQEGSWGSEAEHVATAEEAVEILDSRLEPGDIVL 476 Query: 449 VKSSNSCGFYRLINLLLE 466 VK+S + G + + +L Sbjct: 477 VKASAAVGLWSVAEHVLA 494 >gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris C735] gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris C735] Length = 438 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 119/440 (27%), Positives = 192/440 (43%), Gaps = 22/440 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ +SR+ F A+KG +DG+ F A+ KG +++ A + + VD Sbjct: 16 ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADND--RLILVD 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L KLA R R +I ITG+ GKTTTKE+++ L+ G++NN +GV Sbjct: 74 DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFNNDVGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + E+G SH G+I L P +IT + AHL F E + Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L+ + + L + + I ++G+S +A+ + Sbjct: 194 KGELYDYLKAHDCLLF--LNESNADLVDMACQREMNRIITYGQSDDANVRGEVIDCAPFL 251 Query: 270 SWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + ++ EV H IG + NML + I + AL + P Sbjct: 252 HFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVTPEQINHALESYVPAN 311 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + A N+ LI ++YNANP+SM AAI ++ ++A+LGDM E+GE+ Sbjct: 312 NRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMRELGEV 364 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S+ H L + L VWL G + +D + I + + Sbjct: 365 SELEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRK------FRNVDEVKAEIAAHCPEN 418 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +++K SN Y L LL Sbjct: 419 CYILIKGSNGIKLYELPELL 438 >gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31] gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31] Length = 609 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 200/441 (45%), Gaps = 35/441 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIADER 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D + + LA R + +I ITGS GKT+TK+++ LS KT G+YN Sbjct: 248 IVKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E + K T D +L K G +++ +F + ++ Sbjct: 368 NVFKAKTELLEFVNKENTFVCGDDVYLAKLDVNK-----------IGFNEDNNFIIESYE 416 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S + + E +G H N + + + + + + L Sbjct: 417 FSDKGSKFTLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISS 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + R + I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIRVGED----IYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGED 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +H+++ L I ++L G + D ++ Y T +G+ +++ Sbjct: 527 EVKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586 Query: 441 LVDGDVVVVKSSNSCGFYRLI 461 ++ V+++K+S +I Sbjct: 587 RMEK-VILLKASRGTALEDII 606 >gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] Length = 478 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 176/449 (39%), Gaps = 23/449 (5%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------M 74 + I DSR + P F + G +DGH F+ A+++GA V+ D Sbjct: 19 ADQAASFSRIGTDSRELEPGCLFVPLVGERFDGHGFLAAALEQGALAVLAQRDRLSAEQA 78 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 A + S ++ VDD A +L R + A +IA+TGS GKTTT+E++ LS + Sbjct: 79 EALVRSSGGRIWLVDDTQAAYQELGRLWRRQGSAPVIAVTGSAGKTTTRELIRAVLSPLG 138 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 A +G+ NN IGVPLTL + + + E+GM LGEI L+ P I VIT I Sbjct: 139 PVLASVGNENNDIGVPLTLLKAGGEHRAVVVEMGMRGLGEIERLSRCAEPDITVITNIGT 198 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYS 249 AH+ E IA+AK EI L G + + D E + + ++ + Sbjct: 199 AHIGRLGSREAIATAKCEIVAALRPDGLVVIPAGDPLLEASLAAVWSGRVIRVALQDDPT 258 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + +LR W + + G H A+N+L+ L + S L D Sbjct: 259 GPQPGQLLGRLRAGTDGDRLIWGRAEPGAREHSTELPLPGRHNARNLLLALAVASELGVD 318 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + R R E + + A+ + G Sbjct: 319 PLQLSRLEVALPGGRSRRIRLGEI----------EVLDETYNASPEAMLAALDLLASQGG 368 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYS 427 RR A LG M E+GE S H + E + + + G AL + Sbjct: 369 RRFAALGTMLELGEQSTELHRRVGERARALGLDGLVIVAGGAEGEALLAGAAGLPRLQRV 428 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 ++ + + L GD +++K+S Sbjct: 429 DSPEDAAQTLLGWLEPGDHLLLKASRGVA 457 >gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33] gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33] Length = 609 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 208/443 (46%), Gaps = 35/443 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LVV + + Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVVAD-----NTNIKDKR 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + + LA R + ++ ITGS GKTTTK+++ LS+ KT G+YN Sbjct: 248 VVKVIDTIATMQDLATKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D+ +L K G ++N D+++ ++ Sbjct: 368 NVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNK-----------VGFNENNDYKIESYE 416 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ S + + E +G H N +T+ + + + K L Sbjct: 417 FSNKGSKFVLDGK----EYEMSLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISN 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 ++HID+ L I ++L G + D ++ Y T +G+ +++ Sbjct: 527 EINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586 Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463 ++ V+++K+S +I L Sbjct: 587 KMEK-VILLKASRGTALEDIIKL 608 >gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] Length = 504 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 135/500 (27%), Positives = 202/500 (40%), Gaps = 38/500 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T + + I PQ V G + DSR I P F A+ G DGHDF Sbjct: 1 MIELTT-QKIAEVSGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------------LNKLAVAARL 104 A+ GA L++V V L+ PV + A L + AR Sbjct: 60 AALNSGAALLIVGRP-VEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARY 118 Query: 105 RSK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 + ++ +TGS GKT+TK+++ L +T A GS+NN IG+P T R Sbjct: 119 NTDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAG 178 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D F + E+ +G I+ LT + P + V+ + AHL F + IA AK E+ E L Sbjct: 179 RDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL 238 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--------GKSKNADFQLRKWKQCSEQ 269 L ++ + + A + + G + + + Sbjct: 239 PAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARA 298 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 S+M G+ + V G H N L + + D T LS Sbjct: 299 SFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMD 358 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSF 388 R T+I++SYNANP SM+A I L+ + AVLG M E+GE + Sbjct: 359 VRTR-ESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMGELGEDASDE 417 Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445 H +L VL+ I H + G + AL +A + E +DG ++ SL D Sbjct: 418 HAELGHVLAQRRIDHAVIVGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQD 477 Query: 446 VVVVKSSNSCGFYRLINLLL 465 VV++K+S S G + + LL Sbjct: 478 VVLIKASYSDGLWAVAEGLL 497 >gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 771 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 138/476 (28%), Positives = 213/476 (44%), Gaps = 33/476 (6%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-LHA 60 +PLWT ++ +A+ G + P G + D+R++ P + FFAI+G ++D H+FI Sbjct: 310 SPLWTVDEIAEAVNGTIVQRGPPGPI---CTDTRTLEPGQWFFAIRGENFDAHEFITPEL 366 Query: 61 VQKGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 KG V+ + V G L +L K+A AR + ++ + Sbjct: 367 GHKGCVGVIGNWVCPNWDKGFVEMGGE----------TLTSLEKMANYARNKFHGCLVGV 416 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTT+ M+ + L S+ + G+ NN IGV L+L +P +V F + ELGM G Sbjct: 417 TGSAGKTTTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRG 476 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI L RP I VI + AHL NF+ +EE+A AK EI + LN DD Sbjct: 477 EIMELARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVM 536 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHM 292 L FG+ D + K + ++ + +E V G H+ Sbjct: 537 SL----PVPHGVKKVLFGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHL 592 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 AQN T + L + +LS F P R + + +I++ YNANP S Sbjct: 593 AQNACATAAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVS 649 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 KAAI +L I +G+R+A+LGDM E+G+ H + + + + L G L Sbjct: 650 TKAAIELLKNI--DCKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFL 707 Query: 413 ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L ++ YS + L I L DV++VK S +++ + Sbjct: 708 RAAENLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVVAAIKA 763 >gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 468 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 198/468 (42%), Gaps = 13/468 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + +A +G G P NG + DSR AP + A +G + DGHD++ A + G Sbjct: 4 SATWIAEATRGVVHG--PDVSANGPVVTDSREAAPGGVYVARRGENADGHDYVASAARAG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKT 120 A +V +V I V D GAL LA A + ++A+TGSVGKT Sbjct: 62 AVCALVER-VVDLSDCPPITQVVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTK++L LS+ T A S+NN +G+PLT+ + E+G S G I +LT Sbjct: 121 TTKDLLLQVLSADAPTVAPRLSFNNEVGLPLTVLTADESTRHLVLEMGASGPGHIAYLTR 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P +A+ + AH+ F + +A AKAE+ EG + T LN DD + + Sbjct: 181 IAPPDVAIELVVGHAHMGGFGSVAGVAEAKAELIEGSRQGATAVLNADDPNVAAMAPR-- 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G +S + ++ + V +G H N L Sbjct: 239 AKGPVVRFSPSGVGADVVAEDVRVDAAGRASFTLAAPEGREPVSLSLVGAHHVANALAAA 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISV 359 L + +ALS R + TLID+SYNAN SM+AA++ Sbjct: 299 AGARALGLGLPLIARALSGARALSPHRMDVRGLRIGAVPLTLIDDSYNANIDSMRAAVAA 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L I R IAVL +M E+GE S + H + +LS + + G + Sbjct: 359 LEAI--GKGRRTIAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDAHYYSEGAA 416 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 E + L D VV+VK S + +++ + LLEE Sbjct: 417 SVPDRVLVEDPGAALAAVLDRLTDDCVVLVKGSYNSYSWQVADGLLEE 464 >gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dinoroseobacter shibae DFL 12] gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dinoroseobacter shibae DFL 12] Length = 479 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 170/453 (37%), Positives = 235/453 (51%), Gaps = 14/453 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V G+SID+R +AP + F A+ DGHDF+ A+ GAG +V+ + + Sbjct: 21 DWAVTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQALAAGAGAALVSR--IPEGVAEDA 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 P+ V DV AL L A R R++A +IAITGSVGKT+ KEM+ AL+S + +A S+ Sbjct: 78 PLLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAAERSF 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNH GVPLTLARMP + + E+GM+H GEI L + RPH A+ITTIA AHL + Sbjct: 138 NNHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAALITTIAAAHLEALGSL 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E IA KA IFEGLE G + D +L+A + G I SFG +L Sbjct: 198 EAIAVEKASIFEGLEPDGLAVIPGDLPQTPILRAAAEDAGA-RIESFGTGAGNTHRLSDV 256 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + QL G M + G H + L L V+ + AD A+ AL + P Sbjct: 257 QAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGADPARALMALGAWAPP 316 Query: 324 EGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPH------GEGRRIA 373 GRG R R + LID+++NANP SM AA+ +L+Q +P +GRRIA Sbjct: 317 SGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQAAPAHDIGRIAKGRRIA 376 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 +LGDM E+G + H LA ++ I+ V G + AL ALP + ET L Sbjct: 377 ILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAALPEDKRGRWVETAQAL 436 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + GDVV+VK S +++ L + Sbjct: 437 VPHAHALVDAGDVVLVKGSKGSRVSLVVDALRK 469 >gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 199/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+V + +LS+P VD+ AL ++A + ++A+TGS GKT Sbjct: 58 VARGASGVLVER----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L+ YA G+ NN IG+PL + P D D I+E+G G+I Sbjct: 114 SVKALLLSILTEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPAGGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + + ++ + FG +A+ R+ + + + ++ G H Sbjct: 234 EQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQARAVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI +G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDA----LAAAQGEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446 A V T L +Q+ L + V Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQEHAVNQEQQSPSV 464 Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. ND132] gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans ND132] Length = 462 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 113/464 (24%), Positives = 185/464 (39%), Gaps = 15/464 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN T ++ + + + + V + DSR++ P + FF I G ++DGH+F A Sbjct: 1 MN--LTLAEVARCLGTLADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KGA VV + IG + PV V D AL +LA R A ++A+TG+ GKT Sbjct: 59 AAKGACAVVASR----MIGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML S T ++NN IG+P ++ + D + I ELG+S G++ L Sbjct: 115 TVKEMLFAVASQKFATAKNYRNFNNQIGLPTSMLKASADQELWIMELGISRRGDMEELAP 174 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P +A+IT + P HL +ASAK + L + G ++ D A Sbjct: 175 VASPDLAIITNVGPGHLEGLGNEAGVASAKTALLRYLRQGGRAVISRDYPLL--WNAALE 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + +S +DF + + L + Sbjct: 233 LVDAPVGFSGRDDAESDFSAAFLGALPDGRGRFRLRTPDGDGELTAPFCGRHYAENLACV 292 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + + + + T+ID++YNANP SM A+ Sbjct: 293 AAAAHCLGLTRDDVVGGVQAMAADPQRFCRKIGGG---ITVIDDTYNANPLSMANALRTA 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ + VLGDM E+G + H +L V+ + V+ G H L ++ Sbjct: 350 RELAGERP--LVLVLGDMRELGAEAVLRHEELGRVIRETAPAMVFYKGDHFLDVERGF-- 405 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + +D + + V+VK S S G N L Sbjct: 406 GGFMRRAGDVDEFLEAWRELCISEGAVLVKGSRSLGMELYANAL 449 >gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 423 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 119/437 (27%), Positives = 192/437 (43%), Gaps = 28/437 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R+I P FFA+KG +++G+DF L A+ +GA VV+ I + V Sbjct: 13 VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE-----TMDQDIRIIQVS 67 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL A + R + +TGS GKTT KE++ LS+ KT+A G+ NNH+GV Sbjct: 68 DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ M D + I E+G +H EI L + +P I IT AH+ F G+E I Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+++ + T + D + K K H FG + K +E Sbjct: 188 KSELYDFAFEHQTQVMVNFDDSLQSEKTKDHN-------RFGFGHSKGGVTWKSTSDNEF 240 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++++ +G S + G+ N+ + + AL + P R + Sbjct: 241 ASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDIKTALEAYVPSMNRVEW 300 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N ++ ++YNANP SM +I + G + +LGDM E+G+ S+ H Sbjct: 301 RKTQYNA----VLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGKASKVEH 352 Query: 390 IDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-V 447 + + + + L G H +T L F Q D + Sbjct: 353 EAIVREVISLDMAQNCILIGEHFYD------CDFEGLKFKTTKHLIDFWQKKGAPRDASI 406 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S RL+ L Sbjct: 407 LLKGSRGIALERLLPHL 423 >gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 613 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 114/443 (25%), Positives = 197/443 (44%), Gaps = 35/443 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + +I Sbjct: 201 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NIDVKDER 251 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D + + LA+ R + ++ ITGS GKTTTK+++ LS KT G+YN Sbjct: 252 IIKVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 311 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 371 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E + K T D E L + K ++ F + K Sbjct: 372 NVFKAKTELLEFVIKENTFVCGDD----EYLAKLDVNKIGFNNSNTYKIESYKFSDKGSK 427 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + E +G H N + + + + + L Sbjct: 428 FVLDG-----------KEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISN 476 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + I+++YNA+P SMKAAI L++I + + ++A+LGDM E+G+ Sbjct: 477 MRFQEIKIGED----IYINDAYNASPTSMKAAIDTLNEI--YNDKYKVAILGDMLELGDN 530 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +HID+ L I ++L G + + +S Y T +G+ +++ Sbjct: 531 EIDYHIDVLNYLLDKKIKLIYLYGERMKKAYNMFMKSKSEEYRFWYYPTKEGIVESLKNI 590 Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463 ++ V+++K+S +I L Sbjct: 591 KMEK-VILLKASRGTALEDIIKL 612 >gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 613 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 112/443 (25%), Positives = 196/443 (44%), Gaps = 35/443 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KGA LV+ + + Sbjct: 201 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDVKDER 251 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D + + LA+ R + ++ ITGS GKTTTK+++ LS KT G+YN Sbjct: 252 IIKVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 311 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 371 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E + K T D + L + K ++ F + K Sbjct: 372 NVFKAKTELLEFVNKENTFVCGDD----KYLAKLDVNKIGFNNSNTYKIESYKFSDKGSK 427 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + E +G H N + + + + + L Sbjct: 428 FVLDG-----------KEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISN 476 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + I+++YNA+P SMKAAI L++I + + ++A+LGDM E+G+ Sbjct: 477 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKVAILGDMLELGDN 530 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +HID+ L I ++L G + + +S Y T +G+ +++ Sbjct: 531 EIDYHIDVLNYLLDKKIKLIYLYGERMKKAYNMFMKSKSEEYRFWYYPTKEGIVESLKNI 590 Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463 ++ V+++K+S +I L Sbjct: 591 KMEK-VILLKASRGTALEDIIKL 612 >gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 423 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 119/437 (27%), Positives = 192/437 (43%), Gaps = 28/437 (6%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ D+R+I P FFA+KG +++G+DF L A+ +GA VV+ I + V Sbjct: 13 VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE-----TMDQDIRIIQVS 67 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL AL A + R + +TGS GKTT KE++ LS+ KT+A G+ NNH+GV Sbjct: 68 DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLT+ M D + I E+G +H EI L + +P I IT AH+ F G+E I Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+++ + T + D + K K H FG + K +E Sbjct: 188 KSELYDFAFEHQTQVMVNFDDSLQSEKTKDHN-------RFGFGHSKGGVTWKSTSDNEF 240 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++++ +G S + G+ N+ + + AL + P R + Sbjct: 241 ASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDIKTALEAYVPSMNRVEW 300 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N ++ ++YNANP SM +I + G + +LGDM E+G+ S+ H Sbjct: 301 RKTQYNA----VLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGKASKVEH 352 Query: 390 IDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-V 447 + + + + L G H +T L F Q D + Sbjct: 353 EAIVREVISLDMAQNCILIGEHFYD------CDFEGLKFKTTKHLIDFWQKKGAPRDASI 406 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S RL+ L Sbjct: 407 LLKGSRGIALERLLPHL 423 >gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA1] Length = 485 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 121/493 (24%), Positives = 189/493 (38%), Gaps = 33/493 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRTIALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + + R +AVLGDM E+G+ S + + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++ + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRLINLLLEEFPA 470 R+ + EE A Sbjct: 471 ERVGREVFEEREA 483 >gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] Length = 503 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 200/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DTMIDAVGNDTRTLADGSLYVALRGERFDGHDFATEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+V+ + +LS+P VD+ AL ++A + ++A+TGS GKT Sbjct: 58 VARGASGVLVDR----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + + ++ + +G +A+ R+ + + + + + G H Sbjct: 234 EQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAPIALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIADGLAQARAVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL-----------VDGD----------------- 445 A V T L +Q+ L G Sbjct: 407 AAHAFGEGGRV--FATHAELIDALQADLVDATSQQQQVPQHGSGNTQEHAVIHQQQSPST 464 Query: 446 ---------VVVVKSSNSCGFYRLINLLLE 466 +++K S R++ LL Sbjct: 465 NALPGVASITILIKGSRGSAMDRVVTALLA 494 >gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] Length = 828 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 112/476 (23%), Positives = 200/476 (42%), Gaps = 21/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T ++ Q I IG + ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YTIENIAQIIGARRIGEL-SATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIR 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPV-----FGVDDVLGALNKLAVAARLRSKATIIAI 113 +G VV+ + + +L P+ V L AL KLA R R + +I I Sbjct: 58 DLYARGVRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGI 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKT KE L LS + SYN+ IGVPL++ +M + I E G+S G Sbjct: 118 TGSNGKTVVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAILEAGISEPG 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E+R L ++++P I ++T I AH NF ++E K +F + + N DD F Sbjct: 178 EMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALF---KDCDVVIYNGDDEFIS 234 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +KS + +S + + K ++ + + + I Sbjct: 235 NCVSKSIFSAREIAWSR-RDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDASI 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L L L + ++ P R + LI++SYN++ S+ Sbjct: 294 ENSLNCLAACLYLMLPAGQITERMAKLEPV---AMRLEVKEGKNGCLLINDSYNSDLGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 A+ L + S +R +L D+ E G+ + + + +A++++ I V G + + Sbjct: 351 DIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERVIGVGNEISS 410 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQS--SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +I + L I ++ +++++K + GF L +L + Sbjct: 411 CASRF--NIEKAFYPDTAALIDAIGKGELSLENEIILIKGARKFGFDALTEVLERK 464 >gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] Length = 826 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 112/471 (23%), Positives = 191/471 (40%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + I G + ++ + DSRS+ + FFA+K DGH++I Sbjct: 1 MN--YTIEKVTTLIGARRYGTK-EANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIP 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV V L AL +LA R I+ ITGS Sbjct: 58 ELYARGVRNFVVEVVPDNWETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ + + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNENTQVGVFEAGISKPGEMMA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V T++ AH NF IE K +F + DD A Sbjct: 178 LRDIIQPTIGVFTSLGTAHQENFPSIEAKCKEKLCLFHDTQAIVYSM---DDDVLTHCLA 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + G + +S + + K+ E + GK + I +N + Sbjct: 235 QYNYQGEQLSWSTKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPFIDDASVENSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L + ++ P R Q TLI++SYN++ S+ A+ Sbjct: 295 TCAVVALHLGVTQAALAERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDYNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H +R +L D+ + GE + + +A + + G +LA ++A Sbjct: 352 DFMNRRPDHKGRKRTLILSDILQSGEDDKELYNKVAFLCEKRGVDKFIGIGEGLLAERNA 411 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ T++ + ++L +V+++K + GF L LL+++ Sbjct: 412 FKHLGEKHFFATINAFIHSEVFANLH-DEVILLKGARQFGFDHLTELLVKK 461 >gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus radiotolerans SRS30216] gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus radiotolerans SRS30216] Length = 487 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 198/475 (41%), Gaps = 20/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ + G V G + +DSR+ P F A+ G DG D Sbjct: 1 MIAL-TAAEVAELTGGRLAAGTASTPVTGPVVVDSRAAGPGSLFVALPGERVDGADHAAG 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-----IIAIT 114 AV GA LV+ ++ + V+D + AL +LA R ++T ++ +T Sbjct: 60 AVAAGASLVLAEREVE---LPAGAALVVVEDGVTALGRLARGVLERLRSTGSGPLVVGVT 116 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTK++L L+ A GS+NN IG PLT+ R + E+G LG Sbjct: 117 GSQGKTTTKDLLARVLAPAGPVVAPAGSFNNEIGAPLTVLRADRGTVTLVVEMGARGLGH 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + RP + V + AH F +E A AK E+ E L G LN DD Sbjct: 177 IAALCAIARPDVGVELVVGAAHAGEFGSLETTARAKGELVEALPAEGLAVLNADDDRVAA 236 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + ++ A + +FG+ +AD + + + + LQ + Q Sbjct: 237 MATRTRA----RVLTFGRGAHADVRALDVELDA-LARPRFTLQHGGGRARVQLQLHGEHQ 291 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 L A S+ E R + T++ ++YNANP SM+ Sbjct: 292 VTNALAAAAVALGTGRPLEEVAASLSAATELSPGRMQVVERPDGVTVVHDAYNANPDSMR 351 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AA+ L ++ R AVLG+M E+G S+ H L + ++ + + G + Sbjct: 352 AALKALVGMAG-AGRRTWAVLGEMLELGPASREEHDLLGRTVVRLDVDQLLVVGAGARPV 410 Query: 415 KDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ +D F+++ L GDVV+VKSSN G RL L+ Sbjct: 411 YTGAVMEGSWGEEAAFATDVDDALEFLRARLRPGDVVLVKSSNGAGLARLATTLI 465 >gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris 28-1] gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35239] gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris 28-1] gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35239] Length = 483 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 123/489 (25%), Positives = 206/489 (42%), Gaps = 32/489 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T L + + + G ++ DSR I + F A+ G H DGH F+ Sbjct: 1 MIDM-TIDALREIVG--LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGS 57 Query: 60 AVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109 ++G + VV D + + VDD AL K+A A + ++ Sbjct: 58 VARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRAR 117 Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 +I ITGS GKTTTK++ LS+ KT A GS+NN IG+PLT+ + D + Sbjct: 118 NGSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTE 177 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+G S G++++LT + +AV+ + AHL ++ ++ +A+ K++I L TG Sbjct: 178 YLVLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 LN DD E + ++ + F K + K S+ S L + Sbjct: 238 VAILNADDPRVEAMSGRT----AGRLIYFSSQKATGVRATHLKVDSD-SHASFTLHTPAG 292 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + A + T A ++ H R L Sbjct: 293 KAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADGVDL 352 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID++YNANP S+KAA+ VLS+ + R +AVLGDM E+G + H ++ + I Sbjct: 353 IDDAYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGI 410 Query: 402 SHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + G + AL H++ +Q + D++++K S+ + Sbjct: 411 PVLIGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLW 470 Query: 459 RLINLLLEE 467 +L + E Sbjct: 471 KLAQSIEER 479 >gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9605] gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Synechococcus sp. CC9605] Length = 449 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 116/468 (24%), Positives = 185/468 (39%), Gaps = 26/468 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M T L+ + G + G P + + DSR + + F + G +DGH F+ Sbjct: 1 MT--LTLRQLMD-VWGTTQGGRLEPDALLGRVCTDSRQLQAGDFFVPLVGERFDGHHFLE 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 + A VV+ + + + VDD L A +LA+ R ++A+TGS G Sbjct: 58 QLPEHKAQAAVVSRCWAEPLPP-DLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTT+E++ AL+ + A G+ NN +GVPLT+ + E+GM LGEI L Sbjct: 117 KTTTRELIRAALAPLGAIQASEGNNNNDVGVPLTVLGATAADAALVIEMGMRGLGEIERL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P +AVIT I AH+ E IA+AK EI GL GT+ + D E + Sbjct: 177 SYCTEPDLAVITNIGTAHIGRLGSREAIAAAKCEITAGLHPQGTVVIPAGDPLLESALSA 236 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + + S+ Q + Sbjct: 237 VWSGRVLRVRL----------ADDPEVESDLVGDINGDQLLIDADRLPLQLEGRHNARNL 286 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + V GR +R + TL+DE+YN + A+ Sbjct: 287 LLAVAVADQLGVSRRALQAIQVTVPGGRNRRLQQGG----LTLLDETYN----ASPEAVL 338 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416 + GRR AVLG M E+G+ S H ++A + + L G A+ + Sbjct: 339 AALDLLAAQPGRRFAVLGTMLELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAE 398 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 H+ + + + L GD +++K+S RL+ LL Sbjct: 399 VAASLPHLQLVSNPEDAAAPLAAWLEAGDFLLLKASRGVALERLMPLL 446 >gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 475 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 121/474 (25%), Positives = 194/474 (40%), Gaps = 28/474 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T L Q + G G + + G + DSR + A +G DGHDF+ Sbjct: 1 MIQLTT-RQLAQVVGGTLAG-DGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEA 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118 A+ GA + ++ V DV A +LA ++A+TGS G Sbjct: 59 ALGNGAVASLAEREVPG-------TYVLVPDVQEAFARLARWMVDELPDLQVVAVTGSSG 111 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+TK++L L+ T A I SYN+ +GVPLT+ R+ ++ + E+G S G I +L Sbjct: 112 KTSTKDLLGQVLAEAGPTIAPIESYNSEVGVPLTVCRIEPTTEYLVAEMGASGPGHIAYL 171 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + P + ++ + AHL F + IA KA I EGL G LN DD + + Sbjct: 172 TAIAPPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEGLPADGLAVLNADDPLVAAMSER 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKW-------KQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + ++ D + W + + + V+ QG + H Sbjct: 232 VTSGEVQYFSLDADRAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPVHLRVRG 291 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 ++++ VDTA ++ + R +I++ YNANP Sbjct: 292 AHMAANALAVLLAVRHVGVDTADAVAALSRAEAISRWRMEVTERPDGVMVINDGYNANPE 351 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----- 406 SM+AA++ L ++ R AVL M E+G S + H ++ + + V + Sbjct: 352 SMRAALTALRDMAH--GRRTWAVLAGMLELGPDSAARHREVGRHAAEVGVDVVLVVGDTA 409 Query: 407 --SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 G V + A + V + ++ LVD DVV+ KSS G Sbjct: 410 APIGEGVHDVSTAAGQDGPVVISVHDSEEARSVLEDQLVDQDVVLFKSSRDSGM 463 >gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] Length = 473 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 206/472 (43%), Gaps = 19/472 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++ ++ I + V+ I+ DSR++ AF A+KG DGHDF A+ Sbjct: 3 FSIETAVRRIGARIVVEPSSPLSRVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIA 62 Query: 63 KGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 GA LV+V D+ + V D AL+ LA A R A ++ +TGSVG Sbjct: 63 AGAALVIVTDDLPEQALAFAREAGCCIARVPDAQQALSALASAWREELSAHVVGVTGSVG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTT+ + LS+ KT + G++NN +G+PLT+ P D + + E+GM G+I L Sbjct: 123 KTTTRGLAAQVLSARFKTESTKGNFNNELGLPLTVLTAPKDCEALVVEMGMDGRGQIARL 182 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-- 236 + RP A+IT + AHL E IA AKAEI E L + D F Sbjct: 183 AAVARPERAIITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIE 242 Query: 237 -AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294 A+ GI+ + G+ +D + +E + QG+S G H Q Sbjct: 243 HARLAERGIRVVRFGGEGHASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQ 302 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N I + AL+ + GR R + L+D++YNA+P SM Sbjct: 303 NACGAAAIGLSYGMSLPDVCHALAGAQAQAGRQALLRMPEG---YRLLDDAYNASPESMA 359 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A++SVLS S G RIAVLGDM E+G S + H + ++ I + G + Sbjct: 360 ASLSVLSSFS--TSGSRIAVLGDMGELGSASDAGHDSVGRAVAGAKIDALICVGPKSRRI 417 Query: 415 KDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 A + + + + + DVV+ K+S+ G +L Sbjct: 418 AHAARAAGMDPARIQEVDDAGAAREALSRIVRADDVVLAKASHCMGLSKLAE 469 >gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris FB024-16] gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris FB024-16] Length = 483 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 123/489 (25%), Positives = 206/489 (42%), Gaps = 32/489 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T L + + + G ++ DSR I + F A+ G H DGH F+ Sbjct: 1 MIDM-TIDALREIVG--LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGS 57 Query: 60 AVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109 ++G + VV D + + VDD AL K+A A + ++ Sbjct: 58 VARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRAR 117 Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 +I ITGS GKTTTK++ LS+ KT A GS+NN IG+PLT+ + D + Sbjct: 118 NGSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTE 177 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+G S G++++LT + +AV+ + AHL ++ ++ +A+ K++I L TG Sbjct: 178 YLVLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 LN DD E + ++ + F K + K S+ S L + Sbjct: 238 VAILNADDPRVEAMSGRT----AGRLIYFSSQKATGVRATHLKVDSD-SHASFTLHTPAG 292 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + A + T A ++ H R L Sbjct: 293 KAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDL 352 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID++YNANP S+KAA+ VLS+ + R +AVLGDM E+G + H ++ + I Sbjct: 353 IDDAYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGI 410 Query: 402 SHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 + G + AL H++ +Q + D++++K S+ + Sbjct: 411 PVLIGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLW 470 Query: 459 RLINLLLEE 467 +L + E Sbjct: 471 KLAQSIEER 479 >gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA2] gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA3] gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA4] gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA2] gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL103PA1] Length = 485 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 118/483 (24%), Positives = 184/483 (38%), Gaps = 33/483 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + + R +AVLGDM E+G+ S + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++ + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRL 460 R+ Sbjct: 471 ERV 473 >gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium BBFL7] gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium BBFL7] Length = 417 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 111/438 (25%), Positives = 195/438 (44%), Gaps = 32/438 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+ D+R I + F+A+ G ++DG++++ A+ KGA V + + S+++ Sbjct: 12 KGVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVTV---- 67 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D L L LA R II++TGS GKTTTKE++ L +G+ NNHI Sbjct: 68 VEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQQFNVKGTLGNLNNHI 127 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLT+ + G+ E+G +HL EI L+ + P +IT AHL F + I Sbjct: 128 GVPLTILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGLITNYGKAHLEGFGSEKNII 187 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E+FE L+ G + +L +++ I + S Sbjct: 188 IGKSELFEHLKAHGKTAIVGHWDQEQLKRSQGIERFITSTDSKLI--------------- 232 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ + L+ + + IG + NML+ + I + + LS + P Sbjct: 233 -KAEPYISLEFEGQKSDTQLIGEYNYHNMLLAAAVGQIFNMSTTSILNGLSQYTP----N 287 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +I ++YNANP+SM LS +S E +IAVLGDM E+G+ S++ Sbjct: 288 NNRSQIIQSDNVKIILDAYNANPSSMSV---ALSNLSKQKESHKIAVLGDMFELGKYSKT 344 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + ++ + +L G + ++ H ++ + + + V+ Sbjct: 345 EHQKIVDLTKQLGLDQTYLIGESFSQV-----QTSHALLFNNLESFKKTFKINRNEDAVL 399 Query: 448 VVKSSNSCGFYRLINLLL 465 ++K S R+++L Sbjct: 400 LIKGSRGMALERILDLFQ 417 >gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL060PA1] Length = 485 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 118/483 (24%), Positives = 184/483 (38%), Gaps = 33/483 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAYQVANAVAATAAALAAWAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + + R +AVLGDM E+G+ S + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++ + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRL 460 R+ Sbjct: 471 ERV 473 >gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] Length = 951 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 112/440 (25%), Positives = 190/440 (43%), Gaps = 21/440 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G+S D+R I E F A+ G ++D H+++ A +GA + ++ +P Sbjct: 512 IKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARGACA----AVVAHAVPDAKLPQL 567 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143 + D AL ++ A R + ++A+TGS GKTTTKEM++ A G+ Sbjct: 568 VLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAMLAEWQGEAGRLATAGNL 627 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL R+ + +FELGM+H GEI L + P +A++T H + Sbjct: 628 NNDIGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPTVALVTNAQREHQEFMHSV 687 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A L + G D+ + + A + + FG D + Sbjct: 688 EAVAHENGAAIAALPEDGVAVYPGDEPYSAIWDA---LAEPRRVLRFGLQPGLDVYAEQI 744 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + V ++ G H +N L + A ++ A++ALS F P Sbjct: 745 LADVHATRCRVVTPMGVADLTLPVPGLHNLRNALAAIASAIAAGAPLEGAVRALSGFSPV 804 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + LID++YNANP S++ A+ VL++++ G+R+ VLGDM E+G+ Sbjct: 805 AGR---MQHKHMSDGTLLIDDTYNANPDSVRVAVDVLARMA----GKRVLVLGDMGEVGD 857 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H+++ + G A A H ++D + ++ Sbjct: 858 NGPAMHVEVGNYAREQGLDAFITLGEASRAAAAAFGVGAHA--CASVDEVVAALRGLRAS 915 Query: 444 GDVVVVKSSNSCGFYRLINL 463 V++K S R++ Sbjct: 916 --CVLIKGSRFMRMERVVTA 933 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 86/487 (17%), Positives = 165/487 (33%), Gaps = 49/487 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+ T + + + + +DSR I P + F A G DG +I A+ Sbjct: 9 NPVATVAETVAWLHSRVSLTA------HLKLDSRDIEPGDVFVACPGLSSDGRLYIEKAL 62 Query: 62 QKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 GA V+ + + + P+ V + L +LA R ++A+TG+ Sbjct: 63 ALGASAVLFEAPANDAVAAVADQAPMLPVTGLRALLGELADTWYGRPSAELAVVAVTGTN 122 Query: 118 GKTTTKEMLTIALSSIKKTY----------ACIGSYNNHIGVP-----LTLARMPVDVDF 162 GKT++ + + ALS K + + P D Sbjct: 123 GKTSSVQWIAHALSRNDKPCGTIGTLGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGA 182 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + S +G + VR +A T + HL +E +AKA +F T Sbjct: 183 KAVAMEASSIGIEQGRMDGVRVALAAFTNLTRDHLDYHGTMERYEAAKARLFRWPGLTAA 242 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D++ L+ + + S A + R + ++ + + Sbjct: 243 VINADDEAGRRLIAGLPAGMAMGYSLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQ 302 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL- 341 +V +G H N+L+ G++ L + L+ P +GR + + Sbjct: 303 IVTRLLGAHNVSNLLLVAGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATG 362 Query: 342 ----IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + Y P ++ A+S L ++ GR I + G GE ++ + + Sbjct: 363 RGALVVVDYAHTPDALARALSALRAVATARSGRLICLFG---CGGERDPGKRPEMGRIAA 419 Query: 398 LYNISHVWLSGFHVL-----ALKDALPRSIHVHYSETMDGLFLFIQSSLV------DGDV 446 HV +S + A+ + + I + ++ + DV Sbjct: 420 DL-ADHVVVSSDNPRTESPEAIVEQILAGIPDSVRPDVQ--VDRARAIMQTIWAAAPDDV 476 Query: 447 VVV--KS 451 V++ K Sbjct: 477 VLLAGKG 483 >gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] Length = 825 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 199/465 (42%), Gaps = 13/465 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64 + I +G + ++ + DSRS+ + FFA++ DGH++I ++G Sbjct: 5 IERVATLIGAQRLGNA-EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRG 63 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 VV A+ V AL +LA R I+ ITGS GKT K Sbjct: 64 VRCFVVEEVPARAAELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS SYN+ IGVPL++ + GIFE G+S GE++ L +++ Sbjct: 124 EWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNSHSQLGIFEAGISQKGEMQALHDIIK 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P+IAV+T I AH NF+ EE K +FEG E + N DD + +++ G Sbjct: 184 PNIAVLTNIGSAHEENFATPEEKCREKLRLFEGAE---VMVYNADDDLVTRVLNETNNKG 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +S A F + KQ + + + G+ I N ++ I Sbjct: 241 ERLAWSTKSPNAAMFVTKIDKQPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVVCATIC 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + D T K + P R TLI++SYN++ S+ A+ +++ Sbjct: 301 LHVGLDAHTIDKRMRRLEPV---AMRLEVKEGLNGCTLINDSYNSDINSLDIALDFMNRR 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 H +R VL D+ + G + +++ + + G + A K+++ + Sbjct: 358 PDHNGQQRTLVLSDILQSGLPDAELYKEVSSLAEQRGVQKFIGIGPKICANKESIRLAER 417 Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ +++ + L +VV++K + S GF +L L++++ Sbjct: 418 -HFFASVEDFIRSDVFKGLR-NEVVLLKGARSFGFDQLTELMVKK 460 >gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hydrogenobaculum sp. Y04AAS1] gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hydrogenobaculum sp. Y04AAS1] Length = 446 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 113/472 (23%), Positives = 205/472 (43%), Gaps = 34/472 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN L ++ +++ I F+ + DSR F AIKG DGH +I + Sbjct: 1 MNSL----EVSKSLG--LIHEGKPFFIKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNL 54 Query: 61 VQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + + +V D I + D + AL +A R KA ++AI GS GK Sbjct: 55 LDENIAGFLVREDFDCKEILAKGKSCLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE++ L ++N+ IG+P + D+ + + E+G + L +++ LT Sbjct: 115 TTTKELIAHVLPGKVHKTY--KNFNSQIGLPKVVITADDDIGYLVLEMGATALEDVKKLT 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++ + HI VI++I HL +F IE + E+F+ ++ SF++ Sbjct: 173 NIAKQHIGVISSIGEEHLESFGSIENVVKGNFEVFDSPNLLSGVYPKAFHSFYK------ 226 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +AD +++ E + + + + + +A++ Sbjct: 227 ---KEYGLSFCRFRDDADIRVKNVYIDEEGT----HFEIMGIRLTIPVLSIGIAESAAAA 279 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +G+++ D F +GR + + +G F +ID++YNANP S+K AI Sbjct: 280 VGVLASFGIDWKELKDRFESFKGVQGRMQLIK----KGPFRIIDDTYNANPVSVKNAILT 335 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + + I VLGDM EMGE S++ H + +L +I++V+L G + D L Sbjct: 336 IDSFKDFNK---IIVLGDMLEMGEYSKALHEKVGAMLKSSHINNVYLYGSDMKYAYDVLK 392 Query: 420 -RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466 + V Y + + L + SL +++VK S +++ L+ Sbjct: 393 LSNKEVFYFDNQEELSFHLVKSLKQKTDTNTMILVKGSRGMKMENVVDRLVN 444 >gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 503 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 128/510 (25%), Positives = 204/510 (40%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYIALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V+ + +LS+P V++ AL ++A + ++A+TGS GKT Sbjct: 58 VARGASGLLVDR----LLPALSVPQVVVENTELALARVAAGMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P + DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ I +G +AD R+ + + + + +V G H Sbjct: 234 EQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ HP GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GDGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446 A V T L +Q+ L + V Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLFDAASRETRTQQHASGNTQEHAVIHQQQSPST 464 Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Flavobacterium psychrophilum JIP02/86] gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Flavobacterium psychrophilum JIP02/86] Length = 427 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 193/437 (44%), Gaps = 23/437 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +S D+R I F A+KG ++D + F A+ KGA V+++ + + Sbjct: 14 TSVSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKD---KMIL 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D L L +LA R + IIA+TGS GKTTTKE++ + LS A IG+ NNHI Sbjct: 71 VLDSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNLNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL D D GI E+G +H EI L + P+ IT AHL F GI+ + Sbjct: 131 GVPLTLLSFDEDTDIGIVEMGANHQKEIELLCSIAEPNFGYITNFGKAHLEGFGGIDGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK+E++ LE+ D + + + + + K Sbjct: 191 KAKSELYNYLEENKQTAFVNLDDEIQ----------NQKTMQIMRYSFSIAKESDVKIDF 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + V++ K M++ H IG + A N+ + I D A+ + P R Sbjct: 241 VVANPMVEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIADDDIKDAIQNYIPTNNRS 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + N +I ++YNANP+SM+AAI+ Q+ + IA+LGDM E+G S Sbjct: 301 QLIEKNSNN----IILDAYNANPSSMEAAITNFIQLKAKDK---IAILGDMFELGNDSLI 353 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E+ + G + + ++H+ +T + ++ + + Sbjct: 354 EHKKIIELFINGPEIETYFIGKDF--YCNKI-EMKNIHFFDTYESFSKSFKTRKTSKNTI 410 Query: 448 VVKSSNSCGFYRLINLL 464 ++K S R + +L Sbjct: 411 LIKGSRGMSLERTLEIL 427 >gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA2] Length = 485 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 123/493 (24%), Positives = 190/493 (38%), Gaps = 33/493 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IIA+TGS Sbjct: 59 QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRIIALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + R +AVLGDM E+G+ S + + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++G + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRLINLLLEEFPA 470 R+ + EE A Sbjct: 471 ERVGREVFEEREA 483 >gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase [Aminomonas paucivorans DSM 12260] gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase [Aminomonas paucivorans DSM 12260] Length = 467 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 121/463 (26%), Positives = 186/463 (40%), Gaps = 13/463 (2%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H++ G + G + + DSR + P F A+ G DGH F+ AV GA Sbjct: 9 HEVAALFGGGAEGPDRPFPFS-VCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASA 67 Query: 68 VVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 V+ + GS + VD V AL LA R R + ITGSVGKTTT Sbjct: 68 VLALRGPGREARASLPGSADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTT 127 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++++ L+S++ ++ SYN IG T+ MP D + E G +H GEI L Sbjct: 128 RDLILRVLASVEPSHGAPKSYNTRIGCASTVLGMPPDTRNLVLEYGTNHPGEISALVASF 187 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P +T + PAHL ++ + +AK E+ E + + + + L A A Sbjct: 188 PPQELFLTEVCPAHLEGLGDVQGVLAAKLELLESRQAERVTYNFDNALLRDALHASFSAE 247 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + G + +W + ++ G+S G A + Sbjct: 248 RSLGVGVSGGEVRIERAEPRWTSKGPVLDLHLREAGRSWSFASRLWGRQHAYAWAFAWSV 307 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + P GR R ++ ++DE+YNANPASM A+ L Sbjct: 308 ALRRGVGEEALREVAETSLPLPGR---GRVLSDREGLWILDETYNANPASMGVALENLHL 364 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +S G G A+LG M E+GE S +H ++ L + L G L+ LP Sbjct: 365 LSSQGAGVSWAILGGMRELGETSPHWHREILGKL--RGVDGAVLVGEEWAPLRSDLPD-- 420 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + L L ++++K S S G RL+ L Sbjct: 421 QVRWVPDTAVLLEEGGPVLPKHALLLLKGSRSYGLERLLPLFR 463 >gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL001PA1] Length = 485 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 117/483 (24%), Positives = 184/483 (38%), Gaps = 33/483 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + + R +AVLGDM E+G+ S + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++ + DV+++K+S Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVILLKASRGLAL 470 Query: 458 YRL 460 R+ Sbjct: 471 ERV 473 >gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] Length = 422 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 108/440 (24%), Positives = 183/440 (41%), Gaps = 25/440 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + +DSR + P F AIKG DGH + A+ KGA VV + + Sbjct: 5 SRFVVDSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKLQHIPEE---KLIT 61 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+D + L A + +I ITGS GKTTTKE+L L + + G+ N I Sbjct: 62 VNDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGK-DRAFRNPGNLNTEI 120 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PL++ F I E+ M+ G+I L + PH+A++ + AH E I Sbjct: 121 GLPLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILLNVGTAHRGIAGNQEMIL 180 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K ++ E ++K GT + YD + + K + +FG K D+QL + Sbjct: 181 RGKLQLIENMQKNGTAIVLYDKKLLDRISLK-------PMVTFG-YKKGDYQLVDYCYID 232 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + + I + + + L F P GR Sbjct: 233 FSTKAFYKTPREQLIFNLKSIWNAGQLTNISAVLAALDILGIDC-NKNILENFTPVAGRF 291 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +N ++D++YNA+ S + A+ + ++ R AV+G + E G+ S Sbjct: 292 ----RVMNCNGIYVVDDTYNASIESFETAVETIKKL----GKRSFAVVGSIKEQGKYSIE 343 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H L E+L + V + + + S + S + + F++ L+ GDVV Sbjct: 344 THRKLGEIL--EKLDGVVVYNVDNEI--EIMNCSKKIFASNSATEISDFLKRILIPGDVV 399 Query: 448 VVKSSNSCGFYRLINLLLEE 467 + K+S S +++ + EE Sbjct: 400 LFKASRSVQIEKVLQIYTEE 419 >gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 503 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 124/510 (24%), Positives = 200/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA V+V+ + +LS+P V++ AL ++A + ++A+TGS GKT Sbjct: 58 VACGASGVLVDR----LLPALSVPQVVVNNTELALARIAAGMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D D I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + + ++ + +G +A+ R+ + + + ++ G H Sbjct: 234 EQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ P GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQARPVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446 A V T L +Q+ L + V Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQEHAVNQEQQSPSV 464 Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 AALSGATPITILVKGSRGSAMDRVVTALLA 494 >gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35243] Length = 480 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 122/485 (25%), Positives = 204/485 (42%), Gaps = 31/485 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T L + + + G ++ DSR I + F A+ G H DGH F+ ++ Sbjct: 1 MTIDALREIVG--LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARR 58 Query: 64 GAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109 G + VV D + + VDD AL K+A A + ++ Sbjct: 59 GGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSG 118 Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +I ITGS GKTTTK++ LS+ KT A GS+NN IG+PLT+ + D ++ + Sbjct: 119 KLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVL 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G S G++++LT + +AV+ + AHL ++ ++ +A+ K++I L TG L Sbjct: 179 EMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAIL 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD E + ++ + F K + K S+ S L + + Sbjct: 239 NADDPRVEAMSGRT----AGRLIYFSSQKATGVRATHLKVDSD-SHASFTLHTPAGKAQV 293 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 A + T A ++ H R LID++ Sbjct: 294 EMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDLIDDA 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YNANP S+KAA+ VLS+ + R +AVLGDM E+G + H ++ + I + Sbjct: 354 YNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIPVLI 411 Query: 406 LSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 G + AL H++ +Q + D++++K S+ ++L Sbjct: 412 GVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQ 471 Query: 463 LLLEE 467 + E Sbjct: 472 SIEER 476 >gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN] gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN] Length = 826 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 107/471 (22%), Positives = 190/471 (40%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN ++ + + I +G + ++ I DSRS+ + FFA++ DGH +I Sbjct: 1 MN--YSIDKIAENINAKRLG-DAEAQISFILTDSRSLCFPEETLFFALRSERNDGHHYID 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV S VD+ L AL +L R I+ ITGS Sbjct: 58 ELYHRGVRNFVVEQLPDAFSSIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L+ LS SYN+ IGVPL++ + + GI E G+S GE+ Sbjct: 118 GKTMVKEWLSQLLSFDHNVTRSPKSYNSQIGVPLSVWLLNESSEIGIIEAGISKRGEMEA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V+T++ AH NFS IEE K + + + A Sbjct: 178 LQKIIQPTIGVLTSLGAAHQENFSSIEEKCKEKLLL-------FKDTQALVYQMDDAIAA 230 Query: 238 KSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K G KN D L K + + ++ ++ + + ++ Sbjct: 231 KCIEDFSYDGTLLGWSEKNKDAALFVEKISKDTTTSTIEYCWQTATKGKFTLPFIDDASI 290 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + +I E R Q TLI++SYN++ S+ A Sbjct: 291 QNCITCAAISLYLGMKPETLAERMPMLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIA 350 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + +++ + R +L D+ + G+ + + D+AE++ I G ++ ++ Sbjct: 351 LDFMNRRPDQQKRARTLILSDILQSGQTEKQLYCDVAELVQKRGIKKFIGIGSALMRQQE 410 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ E + + + +V+++K + S GF +L LL+++ Sbjct: 411 VFDGVEERYFFENVADFINSKVFNSLADEVILLKGARSFGFDQLTELLVKK 461 >gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK330] Length = 456 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 200/470 (42%), Gaps = 30/470 (6%) Query: 7 FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +++ + + + + DSR I + F +KG DGHDFI A +GA Sbjct: 5 LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + VDDVL + +LA + + ++A+TGS GKTTTK+M Sbjct: 64 AATLSERPVAEG------TYILVDDVLTSFLRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ KTY G+YNN IG+P T+ MP D + + E+G HLG+I L+ L +P Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + AHL F EIA K +I +GL K G + + D E L A + Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 D + + + + + + G + A N ++ Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +A S R + + ++ + YNANP +M+ + S I Sbjct: 288 EGISEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPT 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422 + GR++AVL DM E+G S+S H + L+ ++ ++L G + AL D Sbjct: 345 NLGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404 Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 V Y + + L ++ L D +++K SNS +L+ L + Sbjct: 405 KVLYFIKNDEKDQFEQLTKAVREKLTPTDQILLKGSNSMNLAKLVEDLED 454 >gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] Length = 528 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 134/488 (27%), Positives = 202/488 (41%), Gaps = 38/488 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQG-------FVNG-ISIDSRSIAPQEAFFAIKGPHYD 52 M + + + G G V G + DSR A F A G D Sbjct: 1 MTSPHDLGWIARTVGGTLSGPPGATQEELAALAVTGPVVFDSRDAAAGALFVAFPGEAAD 60 Query: 53 GHDFILHAVQKGAGLVVVNTD---MVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSK 107 GHDF+ AV KGA V+ D S+P V D+L AL+ LA A R Sbjct: 61 GHDFVQAAVDKGAVAVLAAPDDAYRKPWTARGSVPTVTVGDGDLLRALSALATAHLARLP 120 Query: 108 -ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 T+I +TGS GKTTTK+++ + T A GS+NN +G P+T+ R D + + E Sbjct: 121 RTTVIGLTGSAGKTTTKDLIGRLTRELGPTVAPKGSFNNELGFPITVLRTDEDTRYLVAE 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI--------FEGLE 218 +G +G I+ LT + P I V+ + AHL F +E IA AK E+ + Sbjct: 181 MGARGIGHIKHLTTIAPPRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPD 240 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-----ME 273 + G LN DD+ + A++ + FG+S +AD + + S+ Sbjct: 241 RDGVAILNADDARVRGMAART----KGRVVLFGESPDADVRAEDVRVGSDGRASFTLLYR 296 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 V +G H N L L + + LS P R Sbjct: 297 DGEGPHRYPVALRLVGEHQVSNALAAAATGLELGLAGEKVAEVLSAAEP--DSKWRMAIG 354 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDL 392 + T+++++YNANP SM+AA+ L+ ++ G R AVLG M E+G+ S H + Sbjct: 355 ESADGVTVLNDAYNANPESMRAALKTLATMARARPGARSWAVLGTMAELGDDSAVEHDAV 414 Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + NI+ G A+ + D F+++ GDVV+ Sbjct: 415 GRLAVRLNIAQTVAVGAGAAAIHSGASMEGSYNGESVAVPDADAALAFVRAGARPGDVVL 474 Query: 449 VKSSNSCG 456 VK+S + G Sbjct: 475 VKASRAIG 482 >gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 511 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 122/520 (23%), Positives = 202/520 (38%), Gaps = 68/520 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + ++ + G + P V G + DSR + F A+ G DGHD+ Sbjct: 1 MIAL-SLAEIAEITGGRLDSVDEPDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYAT 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVD------------DV--------------- 91 A+ KGA V+ + +P V+ D+ Sbjct: 60 TAIDKGAVAVLAARP-------VGVPAIVVEPHGRVEGDGANADIYANDEDGSAAAVVAA 112 Query: 92 -----LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 +LA TI+ +TGS GKT+TK+++ + +T A GS+NN Sbjct: 113 LSAIARAVTQRLAA----EQNLTIVGVTGSAGKTSTKDLIATIFREVGETVAPPGSFNNE 168 Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 IG+P T R + + E+ +G IR LT + P + V+ + AHL F E I Sbjct: 169 IGLPYTALRCDEHTRYLVAEMSARGIGHIRHLTEITAPRVGVVLNVGTAHLGEFGSRENI 228 Query: 207 ASAKAEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLR 261 A AK E+ E G LN DD F + ++ A + T G + A + Sbjct: 229 AQAKGELVEALPNAEAGGVAVLNADDPFVAAMAPRTEAKVVYYSTENRRGGAPAAQYYAT 288 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + V + Q + + V A ++ Sbjct: 289 DIVLDDVARPSFTLHSPDAEPVAVKLQVFGSHQVSNALAAAAAAIELGVSADTVAAALSG 348 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCE 380 + R + T+ID+SYNANP SM+ A ++ + + R IAVLG+M E Sbjct: 349 HRLASEHRMDVRTRRDGVTIIDDSYNANPDSMRAAIAALAYTAAARPDARSIAVLGEMGE 408 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALP-RSIHVHYS-------ETM 430 +G ++ H L E L+ Y++ H+ G + A+ +A + I+ + + Sbjct: 409 LGSDAEQSHRQLGEFLAKYHVEHLIAVGENPNCRAMAEAAAQQGINTVVCADAAAAAQAV 468 Query: 431 DGLFLFIQSSLVD------GDVVVVKSSNSCGFYRLINLL 464 DG+ + + D DVV++K+SN+ + + L Sbjct: 469 DGILRVAPAGVDDWASRSVKDVVLIKASNAQRLWLVAEQL 508 >gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella tannerae ATCC 51259] gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella tannerae ATCC 51259] Length = 430 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 111/435 (25%), Positives = 186/435 (42%), Gaps = 20/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R P FFA++G ++G+ F A+ G L + + VD Sbjct: 16 ITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCALA----VVDDPSVVDDDRLILVD 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 DVL L LA R + +I ITG+ GKTTTKE+++ LS G++NNHIGV Sbjct: 72 DVLTTLQALAAFHRHQFTGPVIQITGTNGKTTTKELVSAVLSERYNVLFTQGNFNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + E G +H GEI+ L+ +V P +IT + AHL+ F E + Sbjct: 132 PKTLLRLNASHQIAVIETGANHPGEIKLLSEIVDPDCGLITNVGKAHLAGFGSFEGVIRT 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L F+ + L+ +H L T GK + + ++ C Sbjct: 192 KGELYDYLRTKSDAFVFINADN-PYLQPIAHDLLRITYGRPGKDYDVEGEVLTCDPCLNL 250 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + ++ G + +G+ +T + + A Sbjct: 251 RFRIKGGAWQEVKTQLIGAYNIDNILAAVAVGVRFGVTPEQISRAIAAYC------PTNN 304 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 L TLI ++YNANP SM AA+ I ++A+LG M E+G S H Sbjct: 305 RSELLRTATNTLIVDAYNANPTSMAAALDNFQLIKHP---HKMAILGGMRELGNASAQEH 361 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + ++ + +WL G + Y +++ + ++ + ++++ Sbjct: 362 QAIIDKVATMALDDIWLVGEEFQPFAE------RYRYFPSVEAVEQQLREHPLHDSLILI 415 Query: 450 KSSNSCGFYRLINLL 464 K SNS YRL + L Sbjct: 416 KGSNSQHLYRLPDYL 430 >gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Saccharopolyspora erythraea NRRL 2338] gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 458 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 122/462 (26%), Positives = 183/462 (39%), Gaps = 38/462 (8%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR +AP F A+ G DGHDF AV GA V+ + + P V Sbjct: 2 EFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAARE-------VDAPAVIVPP 54 Query: 91 V------LGALN----------------KLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 V L AL + T++ +TGS GKT+TK+++ Sbjct: 55 VPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQ 114 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L + T A GS+NN +G P T R D + EL +G I L + P I Sbjct: 115 LLEPMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGA 174 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + + AHL F E +A AK E+ E L G LN DD + +++ A + Sbjct: 175 VLNVGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRARVVLVGE 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S G A+ + + + S +V G H N L I L A Sbjct: 235 SPGAHVRAEDIVLDEQARPSFTL---VAPQGSAQVSLPLHGEHHVGNALSAAAIALELGA 291 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 ++ LS R R A T+++++YNANP SM+AA+ L+ ++ Sbjct: 292 TLEQVADRLSGVRRVSAR--RMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRP 349 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHV 424 GR AVLG M E+GE H ++ + NI + + G + Sbjct: 350 GRAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGASLEGSWGEES 409 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +D +++ L GDVV+ K+S +R+ L+E Sbjct: 410 VLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 451 >gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13] gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13] Length = 821 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 90/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + I + V+ + DSR ++ + FFA+K DGH +I + Sbjct: 5 IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV+ + V D L AL KLA R + +I ITGS GKT KE Sbjct: 64 VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L L + SYN+ +GVPL++ +M GIFE G+S E+ L ++ P Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I +IT I AH NF + + +L A Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + S+ + ++ + + I + ++ + ++ Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ T++ ++ F E R LI+++YN++ S+ A+ Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + + +L D+ + G L +S + +A+++ I + G + I Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVFE--IEK 414 Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T + + +++++K S F ++ LL ++ Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457 >gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA1] gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA1] gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA2] gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA2] gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA1] gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA1] gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA2] gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA1] gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA2] gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA1] gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA2] gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL086PA1] gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA4] gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA1] gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA3] gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA3] gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL067PA1] gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA1] gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA1] gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA2] gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA1] gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA1] gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA2] gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA2] gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA3] gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL078PA1] gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA2] gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA3] gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA1] gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA2] gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA1] gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA2] gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL097PA1] gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA3] gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA2] gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA3] gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL092PA1] gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA2] gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA1] gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL020PA1] gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA2] gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes 266] Length = 485 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 189/493 (38%), Gaps = 33/493 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRTIALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + R +AVLGDM E+G+ S + + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++G + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRLINLLLEEFPA 470 R+ + EE A Sbjct: 471 ERVGREVFEEREA 483 >gi|150009966|ref|YP_001304709.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Parabacteroides distasonis ATCC 8503] gi|255012771|ref|ZP_05284897.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides sp. 2_1_7] gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503] Length = 821 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 90/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + I + V+ + DSR ++ + FFA+K DGH +I + Sbjct: 5 IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV+ + V D L AL KLA R + +I ITGS GKT KE Sbjct: 64 VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L L + SYN+ +GVPL++ +M GIFE G+S E+ L ++ P Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I +IT I AH NF + + +L A Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + S+ + ++ + + I + ++ + ++ Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ T++ ++ F E R LI+++YN++ S+ A+ Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + + +L D+ + G L +S + +A+++ I + G + I Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVFE--IEK 414 Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T + + +++++K S F ++ LL ++ Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457 >gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B] gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B] Length = 821 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 90/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + I + V+ + DSR ++ + FFA+K DGH +I + Sbjct: 5 IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV+ + V D L AL KLA R + +I ITGS GKT KE Sbjct: 64 VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L L + SYN+ +GVPL++ +M GIFE G+S E+ L ++ P Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I +IT I AH NF + + +L A Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + S+ + ++ + + I + ++ + ++ Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ T++ ++ F E R LI+++YN++ S+ A+ Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + + +L D+ + G L +S + +A+++ I + G + I Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVFE--IEK 414 Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T + + +++++K S F ++ LL ++ Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457 >gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL074PA1] gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA1] gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL007PA1] gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL056PA1] gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA1] gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL045PA1] gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA1] gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL038PA1] gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA2] gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA2] gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA1] gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL099PA1] Length = 485 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 121/493 (24%), Positives = 186/493 (37%), Gaps = 33/493 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRTIALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASM-----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM + ++ + R +AVLGDM E+G+ S + + + + Sbjct: 353 EDCYNANPDSMAASLTSMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++G + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRLINLLLEEFPA 470 R+ + EE A Sbjct: 471 ERVGREVFEEREA 483 >gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 468 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 114/437 (26%), Positives = 190/437 (43%), Gaps = 14/437 (3%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG--SLSIPVF 86 I DSR I + F A+KG DGH FI A+ +GA V++ + ++ + I F Sbjct: 32 SIKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVILKDEEMSKFTSFNKDISFF 91 Query: 87 GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 GV A+ + + + I+A+TGSVGKTTTKE + L + + G+YN Sbjct: 92 GVPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGNYN 151 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 +G LT+ P + +F + E+G + GEI + + RP +VIT++ P HL F GI+ Sbjct: 152 TLLGCCLTILVAPRNTEFLVLEMGANAKGEIGEIANRFRPSSSVITSVDPVHLEGFGGID 211 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK EI +F+N D K I S G S + +++ Sbjct: 212 GVLGAKLEIVT--ADCKLLFVNGDSPILNSGIDK-LKHRPSKIISVGTSTSCIYRITDSS 268 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + ++ S + + + + + + + A ++ Sbjct: 269 LRLDGNHYFRKITIDSPFGLKTVESKLWGKQHTLIISLAFAVGCEYGVAPDDIAQGLFVM 328 Query: 325 GRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + L L + SYNA+P S+KAAI L I GR+IAVLG M E+G Sbjct: 329 SLPRGRGAILQSEEGVLFIDESYNASPVSVKAAIDNLCLIPSR--GRKIAVLGGMKELGS 386 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + FH ++ + + V + G + +V + M+ + +++ L Sbjct: 387 YANRFHDEILDYAAKA-ADQVLIHGSEWKGINKNY---KNVLCLQDMEDIVNHLKAILRT 442 Query: 444 GDVVVVKSSNSCGFYRL 460 GDVV+VK S + R+ Sbjct: 443 GDVVLVKGSRAYEMERV 459 >gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Chitinophaga pinensis DSM 2588] gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588] Length = 834 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 91/473 (19%), Positives = 181/473 (38%), Gaps = 15/473 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAV 61 ++ + + ++G + + I +DSR ++ F + + H +I Sbjct: 1 MYNAESISKVLKGELLQQTGNPEIEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELY 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KG +V+ + + V D + AL+ L R + +I ITGS GKT Sbjct: 61 EKGVSNFIVSEPVPEGKYPK-ANIILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTI 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KE L L SYN+ IGVPL++ +M + IFE G+S GE+ L + Sbjct: 120 VKEWLYQLLEKDYNIVRSPKSYNSQIGVPLSVWQMKPEHQLAIFEAGISQPGEMEHLEKI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGI-----EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +RP+I + T I AH F I E++ K +F L+ Sbjct: 180 IRPNIGIFTNIGEAHNEGFLNIRQKINEKLVLFSKSDLLIYSKDYLALNECVLNFHNLVG 239 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K + G ++++ + AD ++ + S ++ Q + + + ++ Sbjct: 240 KKDNHEGGLQLFTWSRKTEADLRIISVDKSEHHSRIDALYQTIPIHINIPFVDEG---SV 296 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + +++ R ++I++SYN++ S+ A Sbjct: 297 ENAIHCWALMLHLGMEHSVIQQRMDQLGNIAMRLELKQGINNCSVINDSYNSDLGSLAIA 356 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L Q H +L D+ + G+ S + ++A +L I+ V G ++ K Sbjct: 357 LEFLQQQQQHPTR--TVILSDILQSGKSDASLYEEVASLLQQKGINKVIGIGKNIFREKK 414 Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + T + + +++K + F R+ LL ++ Sbjct: 415 SFQQITGLKSSFFLTTEEFIQQFNQQDFQHETILLKGARIFEFERIGKLLEQK 467 >gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobacterium sp. 21] gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobacterium sp. 21] Length = 437 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 119/436 (27%), Positives = 195/436 (44%), Gaps = 15/436 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 IS D+R+I P FFA+ G ++G+ F A++ GA L +V+ + + + V Sbjct: 16 ISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIVDEPIPI----VDERIEVVS 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L LA R + + +I +TG+ GKTTTKE+L LS YA G+ NNHIGV Sbjct: 72 NVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATKGNLNNHIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PL++ + ++ I E+G +H+GEI FL + RP + +IT + AHL F E + A Sbjct: 132 PLSVLAIDSAIELAIIEMGANHIGEIAFLCGIARPELGLITNVGKAHLEGFGSFEGVKQA 191 Query: 210 KAE-IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E E G +FL D++ + I T + + L + Sbjct: 192 KGELYEWLEEHKGVLFLQGDNNHLLSMANNKTFKQIITYGLDKSNNISGELLSVNPVLNL 251 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 V H G + +N+L + + + + + ++ + P R + Sbjct: 252 GWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGLYFGLNPEEINRGITAYSPTNNRSQ 311 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N T+I + YNAN +SM AA+ L I + +++LGDM E+GE + + Sbjct: 312 ITQTEKN----TVICDYYNANASSMWAALDNLESIHAEKK---VSILGDMFELGEEAPTE 364 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H L E + + G + Y E++D +Q +D V+ Sbjct: 365 HRRLIERIRGMKLYRKIFVG---RNFFGQRQEEHDIEYYESLDAAKQALQEKPLDNTTVL 421 Query: 449 VKSSNSCGFYRLINLL 464 +K+S F L+ L Sbjct: 422 LKASRGMAFEGLLQYL 437 >gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19] gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3] gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19] gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3] Length = 821 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 91/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + I + V+ + DSR ++ Q FFA+K DGH +I + Sbjct: 5 IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLR 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV+ + V D L AL KLA R + +I ITGS GKT KE Sbjct: 64 VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L L + SYN+ +GVPL++ +M GIFE G+S E+ L ++ P Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 I +IT I AH NF + + +L A Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + S+ + ++ + + I + ++ + ++ Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ T++ ++ F E R LI+++YN++ S+ A+ Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 + + +L D+ + G L +S + +A+++ I + G + I Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIVGIGRDLKEYASVFE--IEK 414 Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T + + +++++K S F ++ LL ++ Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457 >gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 483 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 167/477 (35%), Positives = 233/477 (48%), Gaps = 14/477 (2%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PLWT ++ G ++ I++DSR F A+ G DGHDF+ Sbjct: 1 MTAPLWTVDEICTHTSGIMAETAMVPAPIDHITMDSRMCRKGSLFVALPGAQADGHDFLA 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A A +V T + S+ + V D L AL LAVA R R K +IAITGSVG Sbjct: 61 KAANADASAALVTTPDI----SIELAQIIVPDCLAALTALAVAGRNRFKGAMIAITGSVG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TKEML L + +++A G++NNHIG+PL+LA +P F I E+GM+H GEI L Sbjct: 117 KTGTKEMLAHLLRACGQSHANEGNFNNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAKL 176 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + RP IA+IT IA H +F I+ IA+AKAEIFEG+ GT LN DD FF L Sbjct: 177 TRIARPDIAMITRIAAVHSGHFESIDAIANAKAEIFEGM-HGGTAVLNIDDPFFPHLSQA 235 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + GI I +FG +A+F L +Q ++ +E L G + G H A N L Sbjct: 236 AKSAGISRIVTFGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVSFHLGMSGQHWAMNSLG 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L V L D A +L+ F GRG + N ++ID+SYNA+PASM AA++ Sbjct: 296 VLACVHALGEDPVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALA 355 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + H + I VL DM E+G S + H D+ ++ HV G + Sbjct: 356 PFLTGARHTD---IMVLSDMLELGSHSAAAHDDIVATVASIGPRHVIAIGDDFAHAFAKV 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL----LLEEFPAI 471 V + + + D + +K S G +R+ N L ++ P Sbjct: 413 AHDCDVIIANDPAHATDMLARLVQADDTIFIKGSKGSGAWRVTNAVLSVLTDKTPTT 469 >gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis AMD] gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis AMD] Length = 536 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 140/511 (27%), Positives = 207/511 (40%), Gaps = 53/511 (10%) Query: 1 MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M P+ ++ + G N + DSR I F AI G H DGHD++ Sbjct: 27 MMPM-NISEIANTVHGEMHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112 +A + GA + +V + ++ V++ + AL LA TII Sbjct: 86 KNAEKSGAVVAIVEH----VVEGTNLNQIVVNNSVEALGLLAKHNLELRRNLNKPFTIIG 141 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGSVGKTTTK+ML LS++ +T A +GS+NN+IG+PLT ++ + F I E+G +H+ Sbjct: 142 ITGSVGKTTTKDMLKALLSTLDETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI LTH+ P +A++ + AHL F +E IA AK+EI GL G LN DD Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRV 261 Query: 233 ELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--------- 278 + G +S + D S+ + Sbjct: 262 SAMSCLVENKHVRWFGRNAKNGLLESASKDDYQLSASNIKLDSFGKAVFTITERSNSSDL 321 Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQ 336 +EV G H N L + L +D LS + N Sbjct: 322 VNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKND 381 Query: 337 GFFTLIDESYNANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHID 391 FTLID+S+NANP SMKA I L S + RIAVLG M E+G H + Sbjct: 382 EKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTN 441 Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDA---------LPRSIHVHYSETMDGLF 434 + E ++ ++ V G + L V++ + D Sbjct: 442 IGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHEAVYFVHSADEAD 501 Query: 435 LFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463 + + VV++K S++ G L Sbjct: 502 DIVWKLVAEHPSSVVLLKGSHASGLSVLAEH 532 >gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] Length = 826 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 115/471 (24%), Positives = 195/471 (41%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + I G ++ + DSRS+ + FFA+K DGH++I Sbjct: 1 MN--YTIEKVTTLIGARRYG-DKDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIP 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV + V L AL +LA R I+ ITGS Sbjct: 58 ELYARGVRNFVVEVVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ + + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMMA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V TT+ AH NF +E K ++F T I + D+ + Sbjct: 178 LRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH---DTEAIVYSADNEVMAQCLS 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G K +S ++ A + K+ E + V + I +N + Sbjct: 235 QYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVKNSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L T + ++ P R Q TLI++SYN++ S+ A+ Sbjct: 295 TCAVVSLHLGLTPATISERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H RR +L D+ + G+ + + +A + + G +LA + A Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQRSA 411 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ T++ + ++L +V+++K + GF RL LL+++ Sbjct: 412 FKHLGEKHFFATVNSFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461 >gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia goodfellowii F0264] gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia goodfellowii F0264] Length = 459 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 114/453 (25%), Positives = 196/453 (43%), Gaps = 29/453 (6%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 +N IS++S+ + F AI+G G+++I A++KGA V + Sbjct: 21 TDINKISMNSKECGKNDLFVAIRG----GNNYINEALEKGA-YAVYDNAHADIKEEYKNK 75 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 F V+D + L K A R +I ITGS GKTT K++ LSS K G+YN Sbjct: 76 TFFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGNYN 135 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL R+ D F I E+GMS GEI L + P I++IT I +HL E Sbjct: 136 NHIGLPFTLLRLEKDDKFIILEMGMSGFGEIELLGKISNPDISIITNIGESHLEFLHTKE 195 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ + + +N DD + + + S + ++F Sbjct: 196 NVFKAKTELLPYTK--EVLIINGDDDYLKNINESSLKTIKVLRKDSKNIEKSNFYYGNIN 253 Query: 265 QCSEQSWM------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + S + + + + +G H N+ M + + + + + Sbjct: 254 FDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNILNLTMAIAVAKQFGIEDKDIEETVK 313 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + R +G I+++YNA+PASMK ++ S+I + + +IAVLGDM Sbjct: 314 NIKLTDMRF----QITEKGNTIYINDAYNASPASMKKSLETFSEI--YNDRMKIAVLGDM 367 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---------SIHVHYSET 429 E+GE H D+ E L ++ ++L G + +L D + + + V + Sbjct: 368 LELGENELELHSDIYETLRNIKLNKLYLFGERMKSLYDRVKKESQEKNSDENSEVEHFSD 427 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + + ++ + V+++K S ++ Sbjct: 428 KNKIKEKLKEITDEK-VILIKGSRGMKLEEIME 459 >gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36] gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36] Length = 478 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 125/472 (26%), Positives = 193/472 (40%), Gaps = 23/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + + G + +S D+R+I + F A+ G ++D + F+ Sbjct: 1 MISLA-LSAIAAQLNSKWQGD--DVVITAVSTDTRTIKAGDLFIALSGDNFDANRFVAT- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A +V ++ IP V D AL L R + A+TGS GKT Sbjct: 57 ----AAEEGAIAAIVTKKQAVDIPQIIVKDSRIALGLLGKMVREHVAPKVAALTGSNGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L + T A G++NN IGVPLTL R+ F + ELG +H EI + T Sbjct: 113 TTKEMLAAILKLVAPTLATAGNFNNDIGVPLTLLRLQQQHQFAVMELGANHKKEIAYTTG 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P + +I + AHL F ++ +ASAK+EI G+++ G LN DD F+ K Sbjct: 173 LVLPDVVLINNVDAAHLEGFGDLQGVASAKSEILSGVKQQGIAVLNRDDKFYPYWLRKVD 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + + + ++ ++ + G H N L Sbjct: 233 AQRQVSFSVVDDNADYFAADIEFDNAGNPTFKLCTSN-GDCTINLAVAGRHNVANALAAA 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I S D+ T + L +GR K + +ID+SYNAN AS+KAAI+VL Sbjct: 292 AIASCFGIDISTIKRGLESMVNVQGRLKISQLTPR---IRIIDDSYNANIASVKAAINVL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + V+GDM E+G + H + + HV+ G Sbjct: 349 THFPS----TNVLVMGDMGELGSSTADMHQQVGHYAQQQQVDHVYTCGAVSREAALTAGE 404 Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGD---VVVVKSSNSCGFYRLINLLLEE 467 S +++ L + + ++ K S S + I LL + Sbjct: 405 SGRAFLAQS--ALVDALVELVTTAPDTQMFTLLFKGSRSAKMEQAIGLLTTK 454 >gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 433 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 114/439 (25%), Positives = 200/439 (45%), Gaps = 21/439 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI I+S+ + FFA+KG ++DG+ F A+ GA + +V+ + +F Sbjct: 14 SGIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVDNIKYSFSHKN---IFF 70 Query: 88 VDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNN 145 V + L +L +LA+ RL+ IIAITGS GKTTTKE+ T LS + ++NN Sbjct: 71 VKNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILSKKYEVVHSTEKNFNN 130 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLTL MP + + E+G + EI+ + ++ P+ IT AHL F I+ Sbjct: 131 HIGIPLTLLSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYITNFGKAHLEGFKNIKG 190 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + K E++ L+K D +L+ + + K Sbjct: 191 VIRGKLELYNFLKKNKKKVFVNGDDPIQLI------HSLGIDRYIFSERINSDVDVPIKY 244 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +++ ++ L K M++V +G + N+ + I + + KA+ + P Sbjct: 245 FWKKTDLKSVLCIKDMQIVSSLVGSYNLYNIASAITIGNYFKVPLKKIKKAVEDYIP--- 301 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 L + +I + YNANP+SM ++ ++I +G +IA+LGDM E+G S Sbjct: 302 -NNYRSQILEKENVKIIVDCYNANPSSMIETLTFFNKI----QGNKIAILGDMLELGSFS 356 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + H + L NI+ ++L G S + + +I+S+ + D Sbjct: 357 KKEHAKIISFLEKSNINAIFLIGEIFSNTNR--NSSNRIRRFSHKNIFIQWIKSNSLKAD 414 Query: 446 VVVVKSSNSCGFYRLINLL 464 +++K S +I+ + Sbjct: 415 YILIKGSRKNSLESMIHFI 433 >gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens NRL30031/H210] gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens NRL30031/H210] Length = 455 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCAALKGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SM+AA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMRAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALTDK 452 >gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dermacoccus sp. Ellin185] gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dermacoccus sp. Ellin185] Length = 470 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 133/497 (26%), Positives = 209/497 (42%), Gaps = 55/497 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + ++ G +G P + G + DSR A + A G H DGHDF+ Sbjct: 1 MIEL-SLEEIATVTGGRLVG--PDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPA 57 Query: 60 -------------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR- 105 AV GA VV VDDV A ++A A R Sbjct: 58 ALAVGAAGVLGERAVD-GASCVV------------------VDDVELAFAEVARAVVDRA 98 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 I+ ITGS GKT+TK++L L+ T A GS N+ +GVPLT+ R+ + + Sbjct: 99 PNLQIVGITGSSGKTSTKDLLGAVLARFAPTIAPYGSLNSEVGVPLTVCRIDEATRYLVA 158 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G S +G I +LT + P I ++ + AH+ F +E IA K E+ E L + G L Sbjct: 159 EMGASGVGHIAYLTKIAPPSIGIVLNVGQAHMGEFGSVEAIARTKGELVEALPQDGVAIL 218 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV 284 N DDS + +++ A I G ++AD++ + +V Sbjct: 219 NVDDSRVRAMASRTQAKVIL----VGLGEDADYRATDVSIDEAGRPRYHLTCPLGEADVR 274 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G H N L + + L + ++A++ TL+++ Sbjct: 275 LALVGEHQVGNSLSVIAAATSLGLALGDVVEAVAGAGAASRWRMEVSEVGGGV--TLVND 332 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +YNANP SM+AA+ L+ + R IA LG+M E+GE S H + ++ + I + Sbjct: 333 AYNANPDSMRAALRALAHM--GTSRRSIAALGEMRELGEASHDEHTAVGQLAAELGIDRL 390 Query: 405 WLS----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + A + V + +D + + GDVV+ KSS G L Sbjct: 391 VVVGAGAQAIAQGARTAGMTADAVTTVDDIDAAHDVLVEQIAPGDVVLFKSSRDSGLRML 450 Query: 461 INLLLEE-----FPAIQ 472 + L+EE FP + Sbjct: 451 GDRLVEESGTPAFPVTE 467 >gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289] gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289] Length = 826 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 112/471 (23%), Positives = 187/471 (39%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + I G ++ + DSRS+ + FFA+K DGH++I Sbjct: 1 MN--YTIEKVTTLIGARRYG-DKDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIP 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV T + V L AL +LA R ++ ITGS Sbjct: 58 ELYGRGVRNFVVETVPEDWNKRYPDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ + + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMSA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V T + AH NF +E K +F + DD Sbjct: 178 LRDIIQPTIGVFTCLGSAHQENFPSLEAKCKEKLHLFHDTQAIVYSL---DDEVLNRCLD 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G K +S K + K+ E + GK + I +N + Sbjct: 235 EYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVENSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + ++ P R Q TLI++SYN++ S+ A+ Sbjct: 295 TCAVTALQLGVTPAALGERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H RR +L D+ + G+ + + +A + + G +L + A Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSA 411 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ T++ + ++L +V+++K + GF RL LL+++ Sbjct: 412 FRHLGKKHFFATVNAFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461 >gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] Length = 498 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 108/487 (22%), Positives = 184/487 (37%), Gaps = 32/487 (6%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 L + +QG G ++G +DSR +AP + FFA+ G DGHDF+ A+ GA Sbjct: 6 LSRLAEWMQGRVEGDGT-ARISGTAVVDSRKVAPGDVFFALPGEKVDGHDFVPAALAAGA 64 Query: 66 GLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 VV +L + V+D L AL A R + +IA+TGS GKT+TK Sbjct: 65 ACAVVRRIDDGWTAALRPGQGLIVVNDGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTK 124 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++L A+ + + G++NN IG+PLTL + I E+GM G+I L + R Sbjct: 125 DLLAAAVGAQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALIVEMGMRGKGQIAALCRIAR 184 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----------------------GLEKTG 221 P + ++T I P H+ +E IA AK E+ + Sbjct: 185 PDVGLLTNIGPVHMELLGSMEAIARAKGELLQSLSDKGKAVVNGEDRQVVAETLSSRCPV 244 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 ++ L A + + + ++ Q G Sbjct: 245 VYAGTSPEALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYEE 304 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + L ++ A A R+ TL Sbjct: 305 STFEFLLPLPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSLRWETRRFDCAVTL 364 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 I+++YNANPA+ + ++ + G R +AVLGDM E+G + +H + + + Sbjct: 365 INDAYNANPAA--MSAALTTAAELAGPSRLVAVLGDMYELGPEAAEYHRQVGRQAAELGV 422 Query: 402 SHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + D + + + + + DV+++K+S Sbjct: 423 GLLVSVGTLGACIADGAIEAGLTPERIRRFADAETAAAALPGQVEKDDVILIKASRGMRL 482 Query: 458 YRLINLL 464 R+ + L Sbjct: 483 ERVAHAL 489 >gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 128/508 (25%), Positives = 202/508 (39%), Gaps = 56/508 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V + +LS+P V + AL ++A + + ++A+TGS GKT Sbjct: 58 VARGASGLLVER----LLPALSVPQVVVKNTELALARIAASMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLCSLLGVAQTKGAIYAALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ I +G AD R+ + + + + +V G H Sbjct: 234 EQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTPQGEAQVALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ HP GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGD-------------------------- 445 A V + E +D L + + G Sbjct: 407 AAQAFGDGGRVFATHGELIDALQADLVDTARRGTRTQQHASGNTQEHAVIHQQKSPSTAA 466 Query: 446 -------VVVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 467 LSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase; UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine-- D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13] gi|27887168|gb|EAA24272.1| Histidinol-phosphatase; UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine-- D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13] Length = 611 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 115/442 (26%), Positives = 202/442 (45%), Gaps = 35/442 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KG LV+ + + Sbjct: 201 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGTSLVIAD-----NTDIKDKR 251 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V V D + + LA R + ++ ITGS GKTTTK+++ LS KT G+YN Sbjct: 252 VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 311 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P+ A+IT I +H+ + Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 371 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E ++K T D+ +L K G ++N +++ ++ Sbjct: 372 NVFKAKTELLEFVDKENTFVCGDDEYLGKLDVNK-----------VGFNENNTYKIESYE 420 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 ++ S + + E +G H N + + + + + K L Sbjct: 421 FSNKGSKFILDGK----EYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 476 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + G I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 477 MRFQEIK----IGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 530 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +H+D+ L I ++L G + D ++ Y T +G+ +++ Sbjct: 531 EVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKN- 589 Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462 + V+++K+S +I Sbjct: 590 IKMDKVILLKASRGIKLEEIIK 611 >gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sicca ATCC 29256] gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sicca ATCC 29256] Length = 455 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + Q + V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQTLN--LPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRGNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRHRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G +IA AK+EI++GL + + Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGED----GLALIPCEDEHA 229 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + D ++ + VV G H N Sbjct: 230 AMFQTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + +D + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLILDDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452 >gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 486 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 130/486 (26%), Positives = 199/486 (40%), Gaps = 28/486 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN + + A+ G IG P V G + DSR F A+ G DGH + Sbjct: 5 MN--LSLSQIAAAVGGRLIG--PDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGS 60 Query: 60 AVQKGAGLVVVN----------TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR------ 103 A GA +V+ S+ + V+D + AL LA Sbjct: 61 AGALGAVGAIVSDLEAARSGLIQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRT 120 Query: 104 ---LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 + T++A+TGSVGKTTTK++ L++ T A S+NN IG+PLT+ Sbjct: 121 AADRGERLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADEST 180 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + E+G S G I +LT + +A + I AH+ F IE +A+AKAEI GL Sbjct: 181 RYLVLEMGASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLPE 240 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G LN DD+ + + A + G + ++ + +S ++ L G Sbjct: 241 GVAILNADDARAAAMAGLAPAQVLTFSAQGGPADLRAERIVLDEAA--RSAFDLHLPGLD 298 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 L A ++ + A + R + G Sbjct: 299 GPRRVQLAVAGAHNVANALAAAGLALAAGLEPELIAERLGSVSIESPHRMDVSELSGDLL 358 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LID+SYNAN S ++ + + G RR+ V+ +M E+GE S + H E+ + Sbjct: 359 LIDDSYNANIDS--MTAALAALPALAGGRRRVVVVSEMLELGESSAADHARTGELAAEAG 416 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + + G AL A R + V + I + L DGD V+VK SN G +RL Sbjct: 417 AAMLIGIGSTQEALDAAGARGVEVVGFDDAAAAISQIDALLSDGDAVLVKGSNGSGAWRL 476 Query: 461 INLLLE 466 + L E Sbjct: 477 ADHLKE 482 >gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M0579] Length = 463 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 12 MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 68 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 69 LAAGAAAVVVSREDCAALKDA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 125 TVKEMLAAVLRHRFGNEAVLATTGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 244 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 245 TATLNLNTRTFG----VDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 301 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 358 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 414 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 463 >gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 420 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 117/438 (26%), Positives = 196/438 (44%), Gaps = 34/438 (7%) Query: 45 AIKGPHYDGHDFILHAV---------QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95 + G H DGH+ + A+ ++G + VDD L AL Sbjct: 1 PLPGNHIDGHEHVAAALSKEAAAAFWKRG-----------YPNPPEDAVLIFVDDPLKAL 49 Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 +L+ R + A II ITGS GKTTTK+++ L + + + G+ NNHIG+PLTL + Sbjct: 50 QRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNHIGLPLTLLQ 109 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + D + + E+GMS GEI L+ L +P +A+IT I AHL EEIA AK EI Sbjct: 110 IGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIARAKTEILG 169 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 GL+ G N D+ + + + SFG+ + + ++ S +Q Sbjct: 170 GLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIGNDGSSFRLQ 229 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + G H N L + L + + L + G R Sbjct: 230 DSDTEFYIPLL--GLHNVMNALAAVTAGRELEVSDEKIAQGLRD---VQLSGMRIEKRKA 284 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + FT+++++YNA+PA+ KA +S++ Q+ G + VL DM E+GEL + FH ++ + Sbjct: 285 ESGFTVLNDAYNASPAATKAVLSLMKQL--KGYRHKYVVLADMLELGELEEQFHREIGGI 342 Query: 396 LSLYN----ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVV 448 + +S ++ G + + ++ ++ E + ++ + DVV+ Sbjct: 343 AANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKEVIHPEDVVL 402 Query: 449 VKSSNSCGFYRLINLLLE 466 VK+S ++N LL Sbjct: 403 VKASRGMKLEDVVNFLLA 420 >gi|254303960|ref|ZP_04971318.1| bifunctional histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D- glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324152|gb|EDK89402.1| bifunctional histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D- glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 608 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 113/443 (25%), Positives = 198/443 (44%), Gaps = 35/443 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + +DSR + FFAI +G+ ++ + KG LV+ + + Sbjct: 197 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGVSLVIAD-----NTDVKDER 247 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V + + + LA R + +I ITGS GKTTTK+++ LS+ KT G+YN Sbjct: 248 ILKVSNTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSAKAKTLKTEGNYN 307 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P TL + + F + E+GMS LGEIR L + P A+IT I +H+ + Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 367 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK E+ E F+ DD + L + G + N + ++ ++ Sbjct: 368 NVFKAKTELLE-FVNKENTFVCGDDEYLAKL----------DVNRIGFNDNNNHKIESYE 416 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + S + + E +G H N + + + + + L Sbjct: 417 FSDKGSKFILDGK----EYKISLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISN 472 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + + + I+++YNA+P SMKAAI L++I + + +IA+LGDM E+GE Sbjct: 473 MRFQEIKIGED----IYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440 +HID+ L I ++L G + D +S Y T +G+ +++ Sbjct: 527 EVDYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKSKSEEYRFWYYPTKEGIVESLKNI 586 Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463 ++ V+++K+S +I Sbjct: 587 RMEK-VILLKASRGTALEDIIKQ 608 >gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21] gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21] Length = 820 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 106/465 (22%), Positives = 184/465 (39%), Gaps = 18/465 (3%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILH 59 N ++T D+ + S I P VN ++ DSR I FFA+ G DGH ++ Sbjct: 3 NKIYTVQDIATIVAVASELIDPSAIVNTLAYDSRKITDAKHALFFALPG-RRDGHQYVQE 61 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + G VV + V L+ V D L AL +LA R + +IAITGS GK Sbjct: 62 AYRAGVRNFVVRPEAVNITDYLNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGK 121 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T KE L LS SYN+ +GVPL+L +M + I E G+S +GE+ + Sbjct: 122 TIVKEWLYQLLSPEYHIVRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAIE 181 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +V+P I ++T I AH F+ +E K ++F+ +K + + Sbjct: 182 RMVKPTIGILTNIGHAHDDGFASTKEKTIEKLKLFKDADKIVY--------NPTYVDSAI 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G K+ Q +E +S + + +N++ Sbjct: 234 EVPGRHHFTWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENLVCC 293 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 ++ + + + + P R ++ID+SY+ + +S+ A+ Sbjct: 294 WALMLAIGYEAMVIVDRVKRLLPV---SMRLELKKGINNNSIIDDSYSNDLSSLLIALDF 350 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L Q H +L D+ +G+ + + +A +L + + G H+ Sbjct: 351 LKQQQQHSRKM--LILSDLPTVGQNQTALYTKVASMLEGKGLDRLIGVGKHLRQHAALFR 408 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + +T + L I + +++K S GF + L Sbjct: 409 --MDTQFFDTTEQLLTNIPKLEIRDSTILIKGSRVFGFENISKAL 451 >gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lautropia mirabilis ATCC 51599] gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lautropia mirabilis ATCC 51599] Length = 471 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 123/476 (25%), Positives = 190/476 (39%), Gaps = 32/476 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + Q + ++ GIS DSR++ P + + A++G +DGH FI A+ Sbjct: 1 MLDLRTVYQWLPNVTMFGSGAERFTGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + +P V D AL LA R R + +IA+TGS GKTT K Sbjct: 61 GAAAVLTE----VFPERVRVPTLWVPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAK 116 Query: 124 EMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 EM+ L + + +A G++NN IGVPLTL R+ G+ E+GM+H GEI L Sbjct: 117 EMIAAILVAHLGAEAAFATRGNFNNDIGVPLTLLRLSDAHRMGVVEMGMNHPGEIAGLAA 176 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P +A++ H G E A +F L +G DD + +A + Sbjct: 177 MTQPSVALVLNAQREHQEFMDGPEATARENGTVFGALAASGVAVFPGDDPCTPIWQALAQ 236 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + FG + + + + + H + + L Sbjct: 237 GQRVLN---FGLVADEAALEADVQSTPDAGTPYLSVAAARDARPEHFRARLGEALVDIRL 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY------------RCALNQGFFTLIDESYNA 348 I A A ++ R LID++YNA Sbjct: 294 NIAGRHNVRNALAAAACTLALGVPVEAIVRGLAAFEPVSGRLRRTHTAQGVPLIDDTYNA 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM+AAI VL+ R+ V+GDM E G +++FH ++ E I VW G Sbjct: 354 NPDSMRAAIDVLADQPA----PRLMVMGDMGETGAQAEAFHREVGEYAVSRAIEQVWAVG 409 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINL 463 + A A V Y ET++ L G ++VK S R++ Sbjct: 410 KDMKAAAQAGG----VQYWETVEALLAE-HPQAPAGIASILVKGSRFMKMERVVRA 460 >gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310] gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310] Length = 824 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 178/470 (37%), Gaps = 14/470 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M ++ + I G + I DSRS+ + FFA+ +GH +I Sbjct: 1 MT--YSIEKVTTLIGARRYGTK-NAQIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIP 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 Q+G VV+ + V D AL +LA R I+ ITGS Sbjct: 58 ELYQRGVRNFVVSAVPVGYDKLYPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ M G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQFYVTRSPRSYNSQIGVPLSVWLMNEQTQVGVFEAGISKPGEMNA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NF IE+ K + + + + Sbjct: 178 LRDIIQPTIAVLTNLGDAHQENFGLIEDKCREKLIL-------FHDAETLIYPADDEIIS 230 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K S K ++ M + + + + +++ Sbjct: 231 KVITEYDYPGERLYWSMKDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFIDEASVV 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ + T E R Q TLI++SYN++ S+ A+ Sbjct: 291 NSIVCAIVSLHLGVTPDVLDQRMQQLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R VL D+ + G + + +++ + ++ + G + +DA Sbjct: 351 DFMNRRPDHQGRSRTLVLSDIDQSGREASELYREVSNLAVKRGVTKLIGIGPQLTEQQDA 410 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++ T++ + +V+++K + GF L LL ++ Sbjct: 411 I-KVTQKYFFPTVEAFIKSGVFQALRDEVILLKGARRFGFDSLSELLEQK 459 >gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] Length = 423 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 100/443 (22%), Positives = 166/443 (37%), Gaps = 35/443 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + IDSR + P + F AIKG + DGHDF+ HA + GA +V D Sbjct: 11 HKFVIDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN------QII 64 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V + + L +LA + K II ITGS GKT+TKE++ LSS + G+ N+ I Sbjct: 65 VPNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVLSSEISAFKNEGNLNSEI 124 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PL++ I E+ +G+I +L + P I V+ + AH+ +E I Sbjct: 125 GLPLSIINSYRGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSAHVGVAGSVENIF 184 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +I E ++ K + + Sbjct: 185 KGKWQIVEN-------------------SKEALVNFDDERMRCTKCRYFGTTGGDYILSK 225 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + E M L + + + Sbjct: 226 REYNGSSTILTFEYEGEEFYYQLPGYWTKPMALSALVAFGIADMIDVLFNPLNLANYKPL 285 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 K LID++YNA+ S KA I +I + R A++G M E+GE S Sbjct: 286 KGRFNVHRFSKGYLIDDTYNASYESFKAGIE---EILENFPKPRYAIVGAMKELGEYSTY 342 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG--D 445 +H L+E+L + V + + S + S + F+ + L++ D Sbjct: 343 YHKKLSELLEQ--LDGVVVYDKEEE--SKDISCSNIIFRSADDKEIISFLNNRLINDSFD 398 Query: 446 VVV-VKSSNSCGFYRLINLLLEE 467 V+ K+S + +++ +L Sbjct: 399 GVLYFKASRAVELDKIVEEVLNR 421 >gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria mucosa ATCC 25996] gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria mucosa ATCC 25996] Length = 455 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ + DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQALN--LPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G +IA AK+EI++GL + + Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGED----GLALIPCEDEHA 229 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + D ++ + VV G H N Sbjct: 230 VVFQTTSQDHQQRTFGIDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + +D + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++S RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMSA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L + Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTNK 452 >gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640] gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06] Length = 452 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + AS+ VDD L AL LA A R + ITGSVGKT Sbjct: 58 LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A+ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALANNAMRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLGLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia vietnamiensis G4] gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia vietnamiensis G4] Length = 468 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 116/472 (24%), Positives = 192/472 (40%), Gaps = 19/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + I G + P +S DSR+ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIPGAVVHGDPATTFERVSTDSRTAGPGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + L++PV + AL LA R R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN IGVPLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSAAHRLAVIELGMNHPGETDV 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAYAGIWR- 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 A I F + + + ++ V +G H A+N L Sbjct: 235 --VAATGNRILDFALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNAL 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356 ++ + L F P +GR + R + T++D++YNANP SM+AA Sbjct: 293 AATAAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRAA 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL+ + R+ V+GDM E+G+ +FH ++ I ++ G Sbjct: 353 IDVLAAQAA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACA 408 Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467 A + + + L + ++ V+VK S R+++ L + Sbjct: 409 AYGDTAR--HFGDVGALLTALLAAGYGAHATVLVKGSRYMKMERVVDALTNQ 458 >gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] Length = 833 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 113/481 (23%), Positives = 206/481 (42%), Gaps = 26/481 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T + + I +G P ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YTIETIAERISARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLAVAARLRSKA 108 +G VV+ + + S L++ V + L AL KLA R + + Sbjct: 58 DLYSRGVRNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQI 117 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + IFE G Sbjct: 118 PVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAG 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +GE+R L ++++P I ++T I AH NF ++E K +F+ + + N D Sbjct: 178 ISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKNCD---VVIYNGD 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D F AKS + +S K + K ++ + + + + + I Sbjct: 235 DEFISNCVAKSMLSAREIAWSR-KDMERPLFISKVEKKEDCTVISYRYLEMDNTFILPFI 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 +N L L L + + ++ P R + LI++SYN+ Sbjct: 294 DDASIENSLNCLAACLYLMLPAEKITERMATLEPV---AMRLEVKEGKNGCLLINDSYNS 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + AS+ A+ L + S +R +L D+ E G+ + + + ++++ I + G Sbjct: 351 DLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLAGSRGIERIIGVG 410 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLE 466 + + I + + L I + L + +++++K + GF L L + Sbjct: 411 SEISSCAARF--DIEKAFYPNTEALLRAISRGELRLENEIILIKGARQFGFDALTEELEK 468 Query: 467 E 467 + Sbjct: 469 K 469 >gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus castenholzii DSM 13941] gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus castenholzii DSM 13941] Length = 485 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 118/497 (23%), Positives = 202/497 (40%), Gaps = 43/497 (8%) Query: 4 LWTFHDLL----QAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 + ++L + + + P Q + IDSR + F A++G DGH+F Sbjct: 1 MLRLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEF 60 Query: 57 ILH----------AVQKGAG-------LVVVNT---DMVASIGSLSIPVFGVDDVLGALN 96 + + VV++ + + ++ + VDD ALN Sbjct: 61 LADAAARGARGALVRRSKVSSLTLERPYVVIDPVTGEGLERATPDTMLLIAVDDPQAALN 120 Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 +LA R +I ITGSVGKT+TKE+ L +T SYN+ +P+ L ++ Sbjct: 121 RLAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQRSFRTLKSPRSYNSEATLPIVLLKL 180 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D + E+GM GEI L L RP + ++T + P+HL IE I AK+E+ + Sbjct: 181 TADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSELPQA 240 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 L + G LN DD + + A + +G AD + Q Sbjct: 241 LPEDGFAILNIDDPRVRAMAEVTRA----RPFFYGLDPAADLWADAIESRGLQGVSFRVH 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + + + + + +L AI A + R Sbjct: 297 YQGDGLHLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRSEGAQLRLL---AVPGI 353 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 TLID++YNA+PASM+AA+++L+++ +GRRIA+LGDM E+G + + H + Sbjct: 354 NQTTLIDDTYNASPASMQAALNLLAEL----DGRRIAILGDMLELGSIEEEAHRMVGARA 409 Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + G + + ++ V+ + D ++ L GD V++K S Sbjct: 410 AEV-AQILIAVGQRARWIANEAQQAGLPADQVYAVDDNDAAAHLARNLLAPGDFVLIKGS 468 Query: 453 NSCGFYRLINLLLEEFP 469 +++ L P Sbjct: 469 RGMFMETIVSQLQAHRP 485 >gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM 17393] gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM 17393] Length = 842 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 112/490 (22%), Positives = 207/490 (42%), Gaps = 35/490 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T + + I +G P ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YTIETIAERIGARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGS-------------------LSIPVFGVDDVLGALNKLA 99 +G VV+ + +I + + V + L AL KLA Sbjct: 58 DLYSRGVRNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLA 117 Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 R + + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M Sbjct: 118 EQHREQFQIPVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQ 177 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + IFE G+S +GE+R L ++++P I ++T I AH NF ++E K +F+ + Sbjct: 178 SELAIFEAGISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD- 236 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + N DD F AKS + +S K + K ++ + + + + Sbjct: 237 --VVIYNGDDEFISNCVAKSMLSAREIAWSR-KDMERPLFISKVEKKEDCTVISYRYLEM 293 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + I +N L L L + + ++ P R + Sbjct: 294 DNTFMLPFIDDASIENSLNCLAACLYLMLPAEKITERMTTLEPV---AMRLEVKEGKNGC 350 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 LI++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + ++++++ Sbjct: 351 LLINDSYNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLINSR 410 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGF 457 I + G + + I + + L I + L + +++++K + GF Sbjct: 411 GIERIIGVGNEIASCAARF--DIEKAFYPNTEALLRAISRGELRLENEIILIKGARQFGF 468 Query: 458 YRLINLLLEE 467 L L ++ Sbjct: 469 DALTEELEKK 478 >gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 129/510 (25%), Positives = 202/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYIALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V + +LS+P V++ AL ++A + ++A+TGS GKT Sbjct: 58 VARGASGLLVGR----LLPALSVPQVVVENAELALARVAAGMQRDRATRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ I +G +AD R+ + + + + +V H Sbjct: 234 EQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPARHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ HP GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GDGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL-------------VDG---------------- 444 A V T L +Q+ L G Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLFDAASRETRTQQHASGNTQEHAVIHQQQSPST 464 Query: 445 -D-------VVVVKSSNSCGFYRLINLLLE 466 D ++VK S R++ LL Sbjct: 465 ADLSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] Length = 462 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 132/473 (27%), Positives = 211/473 (44%), Gaps = 25/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P + H++ I +G +N ISI S I Q F A+ G YDGHDF+ A Sbjct: 1 MVP-FRLHEIACFINAKCVG--SDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA ++VN SL IP V D AL K+A R + + IIAITGS GKT Sbjct: 58 VMAGAKALLVNR-----YVSLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM L A +YNN IGV +TL ++ +DF + ELG + LGE++ L Sbjct: 113 SVKEMTASILKECGTVIATQKNYNNFIGVSITLLKLTYGIDFAVVELGSNKLGELKKLGE 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V +A++ I +HLS F + I K +IF G+ + + + ++ S Sbjct: 173 IVGADVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVI-NLDSYSFVQGNSI 231 Query: 241 ALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 L K +SF K +F + S + +G H N+L Sbjct: 232 LLNFKKKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFMPILGIHNISNIL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + A + + L + GR LN+G LID++YNAN SM AAI Sbjct: 292 AASALSFAVGASLSNIVHGLQKMNALPGRLFP--FILNRGKLCLIDDTYNANIGSMIAAI 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 +VLS + G RI V+ DM E+G+ +++ +H + ++ NI ++ G + Sbjct: 350 NVLSFMP----GYRILVVSDMLELGDLKMARYYHCYIGRLILGSNIDYIITIGDLSHFIL 405 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + + + L +I L + +++K + ++++ + + Sbjct: 406 KIFKKGK---HFQRKTALIFYINKILSQNRLISILIKGARKFKMEQVVDAVRK 455 >gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 455 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + Q + V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQTLN--LPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G +IA AK+EI++GL + + Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGED----GLALIPCEDEHA 229 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + D ++ + VV G H N Sbjct: 230 AVFQTSSQGHQQQTFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + +D + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAGALALAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452 >gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] Length = 825 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 116/464 (25%), Positives = 201/464 (43%), Gaps = 11/464 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64 + I +G + ++ + DSRS+ + FFA++ DGH++I ++G Sbjct: 5 IERVATLIGAQRLGNT-EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRG 63 Query: 65 AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 VV A+ + V AL +LA R I+ ITGS GKT K Sbjct: 64 VRCFVVEEVPERAAELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVK 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E L LS SYN+ IGVPL++ + G+FE G+S GE++ L +++ Sbjct: 124 EWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNSHSQLGVFEAGISQKGEMQALHDIIK 183 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T I AH NFS EE K +FEG E + N DD+ + +++ G Sbjct: 184 PTIAVLTNIGSAHEENFSTPEEKCREKLRLFEGAE---IMVYNADDALVTHVLNETNNGG 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +S S A F + KQ + + + G+ I N ++ + Sbjct: 241 QHLAWSTKSSDAAMFVTKIDKQPTHTTIHYIYKGGEPASYSLPFIDEASVCNSIICATVC 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D T + +S P R TLI++SYN++ S+ A++ +++ Sbjct: 301 LHLGLDAHTIGERISKLEPV---AMRLEVKEGLNGCTLINDSYNSDINSLDIALNFMNRR 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 H +R VL D+ + G + +++ ++ + G + A K+ + + Sbjct: 358 PDHNGQQRTLVLSDILQSGLPDAELYREVSSLVEQRGVQKFIGIGPKICANKECIALAEQ 417 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ ++D + +VV++K + S GF +L L++++ Sbjct: 418 -HFFASVDEFIRSSVFKGLHNEVVLLKGARSFGFDQLTELMVKK 460 >gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus] Length = 463 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 188/471 (39%), Gaps = 22/471 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + T ++ G + V + DSR + P F A G DGHDF Sbjct: 1 MIRM-TLGEIAGITGGRLVNSDGSAEVTASVEYDSRKVVPGGLFVAFPGERVDGHDFAS- 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118 +V V P V+D L A+ LA R T++ +TGS G Sbjct: 59 ------AVVAAGAAGVLGTRDTGEPGVVVEDSLRAVATLAHEVVARLPELTVVGLTGSSG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTK+ + LS + T A GS NN +G P T+ + D F + E+G +G IR L Sbjct: 113 KTTTKDYIGQLLSRLGPTVALPGSLNNELGFPYTVLQAGADTRFLVLEMGARGVGHIRHL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + RP I V+ I AH+ F +E A AK E+ E L +TG LN DD+ + ++ Sbjct: 173 TGIARPSIGVVLNIGAAHIGEFGSVEGTALAKGELVEALPQTGVAVLNADDALVSAMASR 232 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + + G A ++ ++ + V G H N L Sbjct: 233 TGARVVTVGEAAGAQLRAVDVTLDPA---GRASYVLEHGERRGTVRLRVAGRHQVANSLS 289 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + D + ALS R T+ID+SYNANP+S AA+ Sbjct: 290 AAAVALTAGLAFDDLVTALSEMSMVSDRRMD--VFERPDGVTVIDDSYNANPSSTAAALR 347 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ +S R AVLG M E+GE S H ++ + + + + + + D Sbjct: 348 ALAAMSA--GRRTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRLIAVAENARPILDGA 405 Query: 419 PR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 ++ +Q L DVV+VK S + + + L Sbjct: 406 AEVGAWRGTARFAADQAAAIEILQDDLRADDVVLVKGSR-YRTWDVADWLR 455 >gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Brevundimonas sp. BAL3] gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Brevundimonas sp. BAL3] Length = 476 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 154/463 (33%), Positives = 218/463 (47%), Gaps = 12/463 (2%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT ++ A G G + G++ +SR I + F A+KG DGH+F +A Sbjct: 8 PLWTAAEVAAATGGVLHGD--DRPITGLTYNSREIVAGDLFLALKGAR-DGHEFAANAFA 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121 GA +V + V D L L L VAAR R A+TGSVGKT+ Sbjct: 65 AGAAAALVERPVEGGAS------VVVPDTLHGLEALGVAARERAPHVKRGAVTGSVGKTS 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + + L +A I SYNNHIGVPLTLARMPV+ +FE+GM+ GEI L+ Sbjct: 119 VTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMPVETRRAVFEIGMNAPGEIAPLSRF 178 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V PH A +TT+ P H+ F+ E + + G + D F + + Sbjct: 179 VAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGTAVANGDVAFSGVLCDAAR 238 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG D +L ++ +E + + +L G+ ++ G H N L L Sbjct: 239 AVGARLVVFGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCVLL 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L ++T ++AL+ F P GRG+ A+ G FTLIDESYNANP SM A L Sbjct: 299 MLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKSLG 358 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 GRRI VL DM E+G+ S + H LA+ + + V +G + L DALP S Sbjct: 359 ARP--TAGRRIVVLTDMLELGDQSHALHEGLAQPIEAAGLDLVHAAGPEMRRLYDALPAS 416 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ET L + GD+V+VK SN + L Sbjct: 417 RRGLWRETAVELAAEASALAEAGDIVMVKGSNGSRASLIARAL 459 >gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 464 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 113/468 (24%), Positives = 204/468 (43%), Gaps = 17/468 (3%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + +L G + +++G+SIDSR+I F I G DGH+F+L AV+ Sbjct: 3 LSLDTILSVTGGTLVAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVE 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA ++ + + G + +PV V D L L LA AAR +KA +I ITG+ GKTT Sbjct: 63 EGASAILASHNPFE--GEVPVPVILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTV 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE++ L+S K ++N IG+ ++ D DF + E+G+S+ ++ L ++ Sbjct: 121 KELVAQLLTSKGKVAKNYLNFNTQIGMSFSILAAQGDEDFWVMEVGISNPQDMEELGTIL 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P IA+I + P + SG+ + A + + +L+K Sbjct: 181 TPDIALIINVGP---GHLSGLNKQGVAYHKAQLLRYMKDEGLGIVSLDYPDLVKEVKELR 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +S ++ + + + L ++V +G +++L + I Sbjct: 238 SGSLFFSVLDNQCRYYSKYTGIVENGYGTYRLWLDDDIVDVTSPFLGNFGMESVLASATI 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L D+ + L + R + G + ID+SYNANP SM A I + Sbjct: 298 AHKLGVSSDSIKQQLFQAILPQNRFSCF----THGNWLCIDDSYNANPLSMNAVIESTYK 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +S + + VLG+M E+G+ S++ H + + L+ S ++ G + + L Sbjct: 354 LSDEKK-PLVYVLGEMLELGDSSEAEHEKIGKKLAQTGASIIFWKGGMIDNVLIGLKGGG 412 Query: 423 HVHYSE---TMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 E T F++ L +G ++V K S S +++ ++ Sbjct: 413 FKGILEKISTEQEFQSLFLKHRLDEG-IIVFKGSRSNKMEVFVDVFMK 459 >gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 472 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 126/481 (26%), Positives = 211/481 (43%), Gaps = 21/481 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ T ++ + G P + ++ ++ D+R+++ E F AIKG DG + Sbjct: 1 MIPV-TLAQVVADCNATTAGDTPPDVAREQISSLTADTRTVSGGEVFAAIKGARVDGAEL 59 Query: 57 ILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLR------SKAT 109 A+ GA VV + A + G+ V VDDV A+ LA A R Sbjct: 60 AGAALSAGARAVVTSDPSTAVASGADPARVIVVDDVEKAIGALARANLQRARAEGNPALK 119 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++A+TGSVGKTT K++L + S A GS+NN +G+P+T+ R + E+G Sbjct: 120 VVAVTGSVGKTTVKDLLASLVESRGPVIAPPGSFNNELGLPITVLRTDAGTATLVLEMGA 179 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 H+G I +LT + P + + +A AHL F GI+ + AK+E+ G + G + LN DD Sbjct: 180 DHVGNIDYLTSIAPPDASAVLIVARAHLGEFGGIDNVGRAKSELVTGTREGGVVVLNADD 239 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + +H + +F D R ++ + + V + Sbjct: 240 PRVAAMAGLAHGPVL----TFSARGAGDVAARNIDVGADGRASFTLVTPEGEADVKLRLV 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + ++ I S G T+ID+SYNAN Sbjct: 296 GEHHVANALAAAALAHSLGIPTAQI--ASTLSAVGAASPHRMDVFEAGGATVIDDSYNAN 353 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P SM+A ++ L ++ R++AVLG+M E+GE S H + + + ++ + G Sbjct: 354 PDSMRAGLAALERL--GRGRRKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAVGE 411 Query: 410 HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L A + ++ +G + ++L GDVV+VK SN G +++ + L EE Sbjct: 412 EARPLASAAEAEGVDATWAAGPEGALRELDAALAAGDVVLVKGSNGSGVWKVADSLREEK 471 Query: 469 P 469 Sbjct: 472 K 472 >gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 476 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 137/465 (29%), Positives = 215/465 (46%), Gaps = 22/465 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W+ + QG + P ++GI+ DSR + P++ + I G DGHDFI A G Sbjct: 18 WSVEAVAAITQGKVVH--PGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANG 75 Query: 65 AGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A V+ ++D A G + + GV D A+ LA A R R ++A+TGS GKTTTK Sbjct: 76 AAAVLCDSDHLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTK 135 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +++ LS +T G++NN +GVPLTL ++ + + E+GM+H GEI VR Sbjct: 136 DLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGEVR 195 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PHI VIT I AHL N E AK EIF +EK +N DD + + A+ + + Sbjct: 196 PHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDIALINGDDPYLRRIVARDYRVV 255 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + D L+ + S + + G GI + + I Sbjct: 256 RV------GIREPDADLKAEAIREDLSGLYFEADGVPFHFKWPGIHNVYNCLI--AIWIG 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D L F P R + ++++YNANP SM+AA+ + + Sbjct: 308 RYYHLDDAAIQAGLDAFVPSGNRMQMAEVGG----LRFVNDAYNANPESMRAAMDTVCAV 363 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + EGR+IAVLGDM E+GE ++++H + E ++ + G L + + Sbjct: 364 A---EGRKIAVLGDMLEIGENAEAWHRAVGEYAG-THMDVLIGVGEWAETLCEGARGAAP 419 Query: 424 VH---YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 H + T+D + GD V++K+S+S R+I+ + Sbjct: 420 NHPAVAAATVDAAAQILGEIAQTGDTVLIKASHSLALDRIIDRIK 464 >gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58] gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria meningitidis MC58] Length = 455 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 132/475 (27%), Positives = 207/475 (43%), Gaps = 28/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P+ A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 I VL+++ RI V+GDM E+G + + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSV 402 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EAAEKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 455 >gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 420 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 118/437 (27%), Positives = 197/437 (45%), Gaps = 28/437 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 GI DSR + + FFA+KG +++G+ F A++ GA +V++ +++ ++ + VF Sbjct: 12 KGICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLD-EIIENLNYNNSDVFF 70 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V +VL L A R + TII ITGS GKTT KE+L LS T+A G+YNNHI Sbjct: 71 VKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGNYNNHI 130 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL + D I E+G +H+GEI+ L + P IT AHL F GIE + Sbjct: 131 GVPLTLLNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYITNFGLAHLEGFGGIEGVI 190 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K+E++E L+K +I + L + + D +K Sbjct: 191 KGKSELYEHLDKNNSISFVNPNDSIAL-----------KNCNSQNIEFTDGVNFFYKSGL 239 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + E++ + G + N+L + I + K ++ + P+ RG Sbjct: 240 LGVS------FGNEEILTNLTGSYQENNVLAAITIGRNFELEDSKIAKGIANYIPQNNRG 293 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + ++ N T+ ++YNANP SM+A++ + + + G + E+GE S+S Sbjct: 294 QIFKTGKN----TIFLDAYNANPTSMEASLRNAVNLYKKMP--HVYIAGGLLELGEYSKS 347 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + E+ I + W G + + ++ + G+ + Sbjct: 348 QHQRMIEIFQELEIENAWFIGKQF----EESQMPEKYYNYRDTAQALEALRGKQIHGNFI 403 Query: 448 VVKSSNSCGFYRLINLL 464 +K S S L++ L Sbjct: 404 WIKGSRSFALEALLDEL 420 >gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] Length = 492 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 119/472 (25%), Positives = 189/472 (40%), Gaps = 22/472 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ A G + V + IDSR + P F A+ G DGHDF Sbjct: 1 MIAL-TLAEVAAATGGRLTAGADRLAPVTSVVIDSRQVGPGALFVALPGERVDGHDFAA- 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 G V V +P V D AL LA R + AT++ +TGS GK Sbjct: 59 ------GAVAAGAVAVLGARETGVPTV-VADPAAALAALAAHLRDLAPATVVGVTGSAGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L + T A +GS+NN IG+PLTL R D F + E+G +G I L Sbjct: 112 TTTKDLLADLLGRLGPTVAAVGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGIGHIATLC 171 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RPH+ ++ + AH+ ++ +A E + + L A Sbjct: 172 AVARPHVGLVLNVGSAHVGEYADGRNGIAAAKG-----ELAEAATGLVVLNADDPLVAAM 226 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG++ AD + + + + L Q Sbjct: 227 AGRAGAQVVTFGRAAAADVRAERVEVGGDG-RAAFDLLAGGERHRLRLGLVGAHQVANAL 285 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + A A ++ + R ++++SYNANP SM+AA++ Sbjct: 286 AAAAVATSLGLAPAEAAAALEEARPRSRWRMEVTTTPDGVVVLNDSYNANPESMRAALTA 345 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L + G GR AVLG M E+G + + H L + + +S + G + A Sbjct: 346 LMDMR--GAGRAWAVLGPMGELGADADAAHDTLGRLAAGLGVSRLVAVGAGARRVHQAAE 403 Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + +D + + + GDVV+VK+S S G R+ L + Sbjct: 404 HEGAWAGESTWVPGVDEAVALLAAQVRPGDVVLVKASRSFGLERVATGLTAD 455 >gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M13399] Length = 452 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + AS+ VDD L AL LA A R + ITGSVGKT Sbjct: 58 LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----VDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] Length = 465 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 96/450 (21%), Positives = 177/450 (39%), Gaps = 16/450 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V + DSR P F + G DGHDF AV++GA V+ + + ++ PV Sbjct: 1 MVTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRP----LPDVAAPV 56 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D + AL LA R +++A ++ +TG+ GKT+ KE L L+ KT ++NN Sbjct: 57 LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALNHNN 116 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 IG+P T+ D DF + E G+SH G++ L ++RP + +I + P H Sbjct: 117 QIGMPCTVLNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLILNVGPGHTEGLGDRGV 176 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + + + A L + + AD+ + Sbjct: 177 AWHKARLLAHLAQGGLGLVSADYPDLVREAGATGAKLRFFSAGAHEVEYRADYVGPATEA 236 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 E + + + A ++ + + + + ++ + Sbjct: 237 GGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLLGLSPAE-IAEGLGRAQ 295 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + G + +ID++YNANP SM+ + + + + VLG+M E+G ++ Sbjct: 296 LPPQRFNRERVGAWEIIDDTYNANPLSMRRMLETAAGQA--RGRAFVPVLGEMGELGAVA 353 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI------HVHYSETMDGLFLFIQS 439 ++ H +L +L+ S V+ G H ++ L R V E+ + + Sbjct: 354 EALHEELGRLLADLGPSAVFWKGGHADEVRAGLARGGYDGPWLPVDGPESFMAAWRELAE 413 Query: 440 ---SLVDGDVVVVKSSNSCGFYRLINLLLE 466 G ++ K S+ L+ E Sbjct: 414 RKLDGKRGGLLFFKGSHFNRLETLLTAFRE 443 >gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 130/510 (25%), Positives = 201/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V + +LS+P V D AL ++A + + ++A+TGS GKT Sbjct: 58 VARGASGLLVER----LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + IA K I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ +G AD R+ + + + + +V G H Sbjct: 234 EQQLQAQPVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ HP GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446 A V T L +Q+ L + V Sbjct: 407 AAQAFGDGGRV--FATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPST 464 Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 503 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 129/510 (25%), Positives = 200/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V + +LS+P V D AL ++A + + ++A+TGS GKT Sbjct: 58 VARGASGLLVER----LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWF 233 Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A + +G AD R+ + + + + +V G H Sbjct: 234 EQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ HP GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446 A V T L +Q+ L + V Sbjct: 407 AAQAFGDGGRV--FATHGELIDALQADLVDTASRETSTQQHASGNTQEHAVIHQQKSPST 464 Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 451 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 141/461 (30%), Positives = 208/461 (45%), Gaps = 24/461 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ + G G V + +DSR +AP F A+ G DGHDFI A ++G Sbjct: 4 FTLQEVAEWTGGTRHGDA--VTVGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V D G +PV V D AL L A R R A ++ +TGS GKTT KE Sbjct: 62 AAAALVERD-----GDWPLPVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKE 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ L+ T A G+ NN +GVPLTL R+ + + + E+G + GEI LT + P Sbjct: 117 MIAAILARRGATLATRGNLNNELGVPLTLLRLDREHRYAVIEMGANAPGEIARLTAIAAP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AVIT PAHL F + +A AK E+F GL G +N DD A +G Sbjct: 177 EVAVITNAGPAHLEGFGDLAGVARAKGELFLGLPDAGVAVVNADDPQAPTWYA---LVGD 233 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + FG+ +AD + E+Q+ G V G H N L + Sbjct: 234 RRCLRFGRGADADVRATAETA---GGHFELQIPGGRHPVRLPLPGRHNVMNALAAAAVAV 290 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + L GR + + ++D++YNANPAS++AA+ VL+ Sbjct: 291 ALEVPLGDIVAGLEACSGVAGR---LQWRTGREDCRILDDTYNANPASLQAALDVLA--- 344 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 G R VLGDM E+G +++ H + E + ++ G A A Sbjct: 345 -AEHGERWLVLGDMGELGAGAEALHAEAGEAARRAGVHRLFAVGTLAAAAARAFGEGGR- 402 Query: 425 HYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464 + + D L + + G+V V+VK S G R++ L Sbjct: 403 -HFDDRDS-LLAALLAELSGEVRVLVKGSRFMGMDRIVAGL 441 >gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] Length = 468 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 134/451 (29%), Positives = 195/451 (43%), Gaps = 23/451 (5%) Query: 8 HDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ + G IG V+ ID R P F A G H DGHD+ A + GA Sbjct: 2 DEIASLVGGKVIG-DGSVTVSAPAVIDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAV 60 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 V+ + ++P VDD AL +LA LR T++AITGS GKT+TK+ Sbjct: 61 AVLGSRP-------TTLPTVVVDDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKD 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M+ LSS T A GS+NN +GVPLT+ R F + E+G H+G+I LT LV P Sbjct: 114 MIEAVLSSAAPTVATSGSFNNELGVPLTMLRADATTRFLVLEMGARHIGDIAELTGLVAP 173 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IAV+T + AHL F E IA AK+E+ GL GT L+ DD + + + Sbjct: 174 DIAVVTNVGQAHLGEFGSREAIAVAKSELVRGLAGGGTAVLHADDPRVLAMSDLTDGPVL 233 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FG + A ++R ++ + + A L + Sbjct: 234 ----TFGAGERAGVRVRDLAL--DRLGRPSFALRHDDATAVVTLPFVGAHWALNAAAAAA 287 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A +A + + R G TL+++SYNANP S +A + ++ Sbjct: 288 AGLAAGVGLGQAATALNTASISKWRMELRALSGGATLLNDSYNANPESTRAGLDA---LA 344 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 RRIAVLG+M E+GE S+ H ++ + V G + D Sbjct: 345 AIEARRRIAVLGEMLELGETSRDAHHEIGTYAATR-ADLVLTVGEAAAVIADGA--GAKA 401 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 +++S L GDVV+VK S Sbjct: 402 VALPDNAAAIDWLRSHLAPGDVVLVKPSRGA 432 >gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] Length = 461 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 124/470 (26%), Positives = 204/470 (43%), Gaps = 24/470 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T + + + G + P V+ + DSR P F A+ G H DGHD+ Sbjct: 4 MTLGKIAKVVGGT-VAGDPDIVVDAPAYVDSRQAVPGGLFVAVVGEHVDGHDYAA----- 57 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + A P V D + AL KLA R AT++A+TGS GKT TK Sbjct: 58 GAHAVLGSRPTEA-------PTIVVRDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTK 110 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + L LS+ T A GS+NN +G+PLT+ R + + + E+G +G I+ L + Sbjct: 111 DYLARILSAAGSTVATSGSFNNELGLPLTVLRAHPETRYLVLEMGARRIGHIKHLCEIAP 170 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +A + + AH+ F + IA AK EI L+ GT LN D + +++ A Sbjct: 171 PDVAAVLNVGTAHIGEFGSRDSIAFAKGEIVAALQPEGTAVLNAGDPLVAEMTSRTRA-- 228 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++G + + E+ + V G H AQN L + Sbjct: 229 --RVLTWGPDDADVSERGSEVDDLGRPSFEIGYDDEWYPVRLQQSGLHQAQNALAAATMA 286 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + LS R +++++YNANPAS+ AA+ L+ I Sbjct: 287 LAVGIPLADIAAGLSAATA--SSPMRMEVHERADGLIVVNDAYNANPASVVAALESLAVI 344 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 R +AVLG+M E+G S H+ + + V + G + + L Sbjct: 345 GRRRHRRTVAVLGEMLELGRESFDGHVRVGRAAARLGTDIVVVVGAAAGGIVEGLEAVAA 404 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 +E ++ +++ +++ GDVV+VK+S+ + + + LL+ P Sbjct: 405 WRGDGVVAEEVEEALEWVRENVLSGDVVLVKASHGVALWEVADALLDTDP 454 >gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, putative [Chlamydophila psittaci 6BC] Length = 436 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G++IDSR + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 13 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLEL 70 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D AL + + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 71 IVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNS 130 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + VPL+L D DF I E+G+S ++ L +V P +AVIT IA H+ NF + Sbjct: 131 QLTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNF-PDQG 189 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + E L + L D ++ +S + + + D + + Sbjct: 190 VQGIAEEKSHILRNSRVQLLPKDSPWYSYFMKQSVSAEKFSFAFY------DETADFYYK 243 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + ++ N+L++L + +L VD I + Sbjct: 244 AIRKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPM 303 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ Q +I+++YNA P +M AA+ + +P G+ I +LG M E+G S Sbjct: 304 RFEQSVRNGIQ----IINDAYNACPEAMIAALDAI--PNPSEGGKVILILGHMAELGNHS 357 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444 + H +A L S ++ G L ++ L + V + + G+ ++ + G Sbjct: 358 EEGHTVVANKA-LSKASIIFFIGEKWLPIRHLLKHDTCEVSFYPSAQGIEEILKKVVQQG 416 Query: 445 DVVVVKSSNSCGFYRLI 461 D+V++K S S L+ Sbjct: 417 DIVLLKGSRSLALESLL 433 >gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci RD1] gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] Length = 448 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G++IDSR + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLEL 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D AL + + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 83 IVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNS 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + VPL+L D DF I E+G+S ++ L +V P +AVIT IA H+ NF + Sbjct: 143 QLTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNF-PDQG 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + E L + L D ++ +S + + + D + + Sbjct: 202 VQGIAEEKSHILRNSRVQLLPKDSPWYSYFMKQSVSAEKFSFAFY------DETADFYYK 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + ++ N+L++L + +L VD I + Sbjct: 256 AIRKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPM 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ Q +I+++YNA P +M AA+ + +P G+ I +LG M E+G S Sbjct: 316 RFEQSVRNGIQ----IINDAYNACPEAMIAALDAI--PNPSEGGKVILILGHMAELGNHS 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444 + H +A L S ++ G L ++ L + V + + G+ ++ + G Sbjct: 370 EEGHTVVANKA-LSKASIIFFIGEKWLPIRHLLKHDTCEVSFYPSAQGIEEILKKVVQQG 428 Query: 445 DVVVVKSSNSCGFYRLI 461 D+V++K S S L+ Sbjct: 429 DIVLLKGSRSLALESLL 445 >gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] Length = 468 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 120/474 (25%), Positives = 205/474 (43%), Gaps = 18/474 (3%) Query: 1 MNP-LWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M LW DL ++I G P F + DSR + P AF AI+G DGHD+ Sbjct: 1 MKWQLWKVSDLAESIGASWWGEDIILPDFF----TADSREVRPGAAFVAIRGNAEDGHDY 56 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLR-SKATIIAIT 114 I A+ +GA L++ + S+ V V+D + L ++A A +IAIT Sbjct: 57 IKDALHQGASLIIAEKGRIPQGLSIRDRAVIEVNDSVVDLARMASAYLSACLPDEVIAIT 116 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GSVGKTTT+E+L + + S+N IG LT+ MP + I E+G + GE Sbjct: 117 GSVGKTTTREVLKKCFEGMPLVFGAEKSFNTLIGCSLTILAMPAGTNVLILEMGTNKPGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I + P +IT ++ AHL +E + +AK EI T+ N D+ Sbjct: 177 IEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITRS-PHLKTLIFNADNENLAN 235 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + + K K + Q + ++ ++ + + G Sbjct: 236 AAGQVYGTCKKIGVGVRKGEVRICQST-FDLVENLPRLKTTIRWEDGVISDLYCGLWGTH 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + +++ +AL R R + +ID+SYNANP+SMK Sbjct: 295 NSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGRVFSTRAGAVIIDDSYNANPSSMK 354 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A+++ S + +GR++A+LG M E+G+ H ++ S + + ++L G Sbjct: 355 ASLNTFSTV--EVKGRKLAILGSMKELGKEESVLHEEILR--STHFLDALFLVGEEWKVP 410 Query: 415 KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +P + + + + + GD V++K S+S +++ +L+E Sbjct: 411 LEKMPEHERSKIVIVSKVQSFAVELAKMIRSGDGVLIKGSHSHHLEKVVLILME 464 >gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 454 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 194/463 (41%), Gaps = 20/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ +AI G +G ++DSR++ E FFA++G DG DF A Sbjct: 5 TLSEISRAIGARLHGTDGGERAHGAAVDSRAVRGGELFFALRG-RLDGADFAPDARA--- 60 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKE 124 + L +P V+D L AL +LA R + AT++ ITG+VGKTTTK+ Sbjct: 61 ----RGAVAAVADRPLEVPTLVVEDPLRALQELARWSLRREASATVVGITGTVGKTTTKD 116 Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 L L S + G+ NN IG+PLT+ D + + E+G +H G+I FL + R Sbjct: 117 ALATILRSAGRKITATQGNLNNEIGLPLTVLNAAPDTEVMVLEMGATHPGDIAFLCGIAR 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+ V+T I+P HL +F ++++A K E+ L + G A Sbjct: 177 PHVGVLTAISPVHLDSFGSLQKLAETKGELARSLPEDGAFVSPVGVPE----AAVGGGRA 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +FG + + ++ E V G+S V G H+ + +L G Sbjct: 233 FGRHITFGDEGASLW-ASGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGA 291 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L ++ + LS G R + L D+SYNA+PA+M A + ++ Sbjct: 292 LALGVALEECARGLSR---LRRTGLRGDLLRLRDDILLYDDSYNASPAAMAAVLRYGARQ 348 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + R +AVLG M E+G ++ +H + + + + + G +A Sbjct: 349 ASSSGRRLVAVLGGMFELGPGAREYHREAGRLAAEVGVDLLVCVGEEAGWYAEAFDGEK- 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + L GD V+VK S L L E Sbjct: 408 -VLYRDAGEAARELPHLLRPGDYVLVKGSRGVRLDTLTGRLKE 449 >gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha275] gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis NZ-05/33] Length = 452 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA R + ITGSVGKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia sp. CcI3] gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia sp. CcI3] Length = 467 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 119/476 (25%), Positives = 178/476 (37%), Gaps = 21/476 (4%) Query: 1 MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A G P V + +DSR + F A+ G DGHDF Sbjct: 1 MIPL-TLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAA- 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V V + S+ P V D AL LA R + AT++A+TGS GK Sbjct: 59 ------AAVAAGASAVLAARSVGEPAVIVPDPPSALAALAAYVRDLAAATVVAVTGSAGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L + T A GS+NN IG+PLTL R D F + E+G G I L Sbjct: 113 TTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGPGHIATLC 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP + V+ + AHL ++ E + + L A Sbjct: 173 AVARPAVGVVLNVGSAHLGEYAD-----GRLGIAAAKGELAEAASEAVVLNADDPLVAAM 227 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + +FG+ AD + L V G+ + Sbjct: 228 AVRTTAEVITFGEGGRADVRAGAVDVDRLGRASFDLLAHGEHHRVTLGLVGAHQVPNALA 287 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 V+I + A R R +++++YNANP SM+AA+ Sbjct: 288 AAAVAIRLGLSPDRVAAALSAARPRSR-WRMEVTSTAAGVVVVNDAYNANPESMRAALKA 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418 L + G+GR AVLG M E+G+ + + H L + + G + Sbjct: 347 LVDMR--GKGRAFAVLGPMGELGDAAAAEHDVLGRFAVRLGVDRLIAVGPAARHIHLGAS 404 Query: 419 ---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + + + DVV+VK+S S G R+ L+ F + Sbjct: 405 LEGSWDGESVEVTDAEEAVALVAAQAGPDDVVLVKASRSFGLERVAEALVTRFGVL 460 >gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 463 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 226/473 (47%), Gaps = 26/473 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M L+ D+ + IG +N ISIDSR I F AIKG ++G FI Sbjct: 1 MINLY-LKDIALILNAKLIGN--NCKINSISIDSRKIFNKKNCLFIAIKGKKFNGECFIK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +++ GA V+ A +++IP V + + +L +L+ R SKA IIAITGS G Sbjct: 58 ESIKNGAVAVI-----NARKVNINIPHLIVKNTIISLLRLSKWIRENSKAKIIAITGSSG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+ KE++ L++ T A ++NN+IGVPLTL R+ + +F I E+G + GEI+ Sbjct: 113 KTSVKEIIFNILNTFSNTIATKKNFNNNIGVPLTLLRLNKNHNFAIIEVGGNKFGEIKTS 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++L++P IA+I I+ +HLS F I ++ AK EIF G++ + + + K Sbjct: 173 SNLIKPDIALINNISESHLSGFKSINGVSKAKEEIFSGIQGKKNGIIVLNYN-SNDWKEW 231 Query: 239 SHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 L ++ FG KN K+ + + Q + EV IGYH N Sbjct: 232 KKKLKDNLVFWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKEECEVSLPLIGYHNLFNA 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + I ++ A +++ L +P + R N +ID+SYNAN SM +A Sbjct: 292 MAAIAISFLVGASMESIKYGLKKSYPFKRRLFPIFLNKN---KIIIDDSYNANVGSMISA 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHVLALK 415 ISVL+ + G +I ++GD+ E+G+ + H ++ +S I+ V+ G+ Sbjct: 349 ISVLNNMP----GYKIIIIGDILELGKQKEIIIHKNIGFFISKSKINKVFSIGYLS-YFS 403 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLE 466 + + +D L + V++K SN Y ++ +L E Sbjct: 404 SIFSK--KGKHFYNIDYLISETIKMISRYPIITVLIKGSNKTDAYNIVKMLQE 454 >gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EUN1f] gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EUN1f] Length = 510 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 189/467 (40%), Gaps = 29/467 (6%) Query: 14 IQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 +G G+ P V + IDSR +AP F A+ G DGHDF V Sbjct: 13 TRGRLADCAGVDPAAPVTSVVIDSRQVAPGSLFVALPGERVDGHDFAA-------AAVGA 65 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 V + + +P V D L LA R R AT+I +TGS GKTTTK++L L Sbjct: 66 GALAVLAARPVGVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLL 125 Query: 131 SSIKKTYAC---------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + IGS+NN IG+PLT+ R + F + E+G +G I L L Sbjct: 126 GGHGEAGGPGGLGATVAAIGSFNNEIGLPLTMLRAEPETRFVVLEMGARGIGHIATLCAL 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP + ++ + AH+ ++ + + + LN DD + A+ A Sbjct: 186 ARPQVGLVLNVGSAHVGEYADGRRGIAVAKG-ELAEAASELVVLNADDPLVASMAARVQA 244 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG +AD + + + + L Q Sbjct: 245 SA--KVVLFGTGASADVRAERIEVDAAGRAAFDLLASGEC-HRLRLGLVGAHQVANALAA 301 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + A A ++ + R G +++++YNANP SM+AA++ L Sbjct: 302 AAAAIGLGLAPADAAAALERARPRSRWRMEVTTTPGGVVVLNDAYNANPESMRAALAALL 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 I G+GR AVLG M E+G + H +L +++ + + G L + +A Sbjct: 362 DIR--GDGRAWAVLGPMGELGAGAAEAHRELGRLVASLGVPRLVAVGPGALGVHEAARED 419 Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + +D F+ + GDVV+VK+S S G + L Sbjct: 420 VAWAGESTWVSGVDEAVAFLGGQVRPGDVVLVKASRSFGLEAVAAGL 466 >gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 503 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 129/510 (25%), Positives = 201/510 (39%), Gaps = 60/510 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V + +LS+P V D AL ++A + + ++A+TGS GKT Sbjct: 58 VARGASGLLVER----LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L YA G+ NN IG+PL + P D DF I+E+G G+I Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + +PH+A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGIWF 233 Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ +G AD R+ + + + + +V G H Sbjct: 234 EQQLQAQPVQGRCIVRYGLQIGADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ HP GR LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446 A V T L +Q+ L + V Sbjct: 407 AAQAFGDGGRV--FATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPST 464 Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494 >gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix algicola 5H-3-7-4] gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix algicola 5H-3-7-4] Length = 400 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 118/421 (28%), Positives = 198/421 (47%), Gaps = 23/421 (5%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 FFA+KG +++G+ F A++KGA V+++ + V++VL L +LA Sbjct: 2 FFALKGDNFNGNTFSTEALKKGAKYVIIDELEYNTSSQT----ILVENVLETLQQLATYH 57 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R II +TGS GKTTTKE++ LS T A G+ NNHIGVPLTL M D + Sbjct: 58 REYLNIPIIGLTGSNGKTTTKELINTVLSKKYNTTATKGNLNNHIGVPLTLLSMTKDTEI 117 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 GI E+G +HL EI FL+++ +P IT AHL F I+ + + K+E++ L Sbjct: 118 GIVEMGANHLKEIEFLSNIAKPDFGYITNFGKAHLEGFGSIQGVINGKSELYNYLITYKK 177 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D + K KS ++ + ++ V L+ + Sbjct: 178 HIFFNADDTIQ---------NEKLSNYNLKSGFSNQTQNQLNINFLEANPFVTLKFQDQI 228 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG + N+ + I S A+ + P R +N+ +I Sbjct: 229 ITSQLIGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNNRS----QIINKNSNKII 284 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++YNANP SMKAA+ S ++ + IA LGDM E+G+ +Q+ H ++ ++++ NI+ Sbjct: 285 LDAYNANPTSMKAALENFSNLNATYK---IAFLGDMFELGDEAQAEHQNITDLITTLNIN 341 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 V+L G + + K + + +T + L + + +++K S R+++ Sbjct: 342 TVYLIGTNFNSTKT---ENKKIKQYKTFEALKKSFNTIDITNATLLIKGSRGMALERIVD 398 Query: 463 L 463 L Sbjct: 399 L 399 >gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18] gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18] Length = 479 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 28 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 84 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA R + ITGSVGKT Sbjct: 85 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 140 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 141 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 200 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 201 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 260 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 261 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 316 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 317 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 373 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 374 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 429 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 430 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 479 >gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis ATCC 13091] gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis ATCC 13091] Length = 452 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ + V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLLMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGSVGKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAVMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC3088] gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC3088] Length = 449 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 134/466 (28%), Positives = 216/466 (46%), Gaps = 25/466 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN + L + + G ++ G++ DSR + + F A KG DGHD++ A Sbjct: 1 MNTRISSDQLAFLLDAQTRGSA--AYIQGLNFDSRHVQSGDLFVAFKGDKADGHDYVEAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V + I V+D L AL + A + R S AT + ITGS GKT Sbjct: 59 RARGAVAALVER-----WVPVEITQIRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T K + LS+ T A G+YNN IGVPLTL + + F + E+G G+I +L Sbjct: 114 TVKSTVAHILSAQGATSATQGNYNNEIGVPLTLLELGPEDQFAVVEMGARFKGDIAYLCA 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV P++ ++T + PAH+ F I+ IA K EIF+G++ T + D + + + Sbjct: 174 LVEPNVRILTAVLPAHMETFGSIDVIAQTKGEIFDGMKPTDVAVMPGDSPYLSAWQTR-- 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I +FG S+ D Q+ + ++ EVV +G H A N+ + Sbjct: 232 --AAGKIVTFGYSEANDIQILDVSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAAS 289 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 +G +DT + + + R + TL+D+SYNA+P +M+ A++ Sbjct: 290 VGACLACGMSLDTIV---AQVASVQAVQGRLARIILSDKTTLVDDSYNASPEAMRQALAA 346 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L G R+A+LG M E+G S +H + E +++ +WLSG L D+ Sbjct: 347 LE----RSPGARLAILGPMAELGVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDS-- 400 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + Y + ++S V D ++VK+S S R+ + L Sbjct: 401 ---RLRYFADTQAIIDELRSVPV-FDWILVKASRSARLDRVASHLQ 442 >gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Alicycliphilus denitrificans BC] gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicycliphilus denitrificans K601] gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicycliphilus denitrificans BC] gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicycliphilus denitrificans K601] Length = 463 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 121/473 (25%), Positives = 196/473 (41%), Gaps = 27/473 (5%) Query: 2 NPLWTFHD---LLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 P+ T LL+A I + + + D+R++A + F A+KG +D + + Sbjct: 7 TPMMTLRQAFDLLRARIPAARLVGDGATPLMRVHTDTRTLAAGDLFVALKGERFDANSLL 66 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A ++ + +P V D L AL LA R + ++A+TGS Sbjct: 67 PQAR----AAGAAAAIAHGALEAAGLPGVEVPDTLAALGVLAAGWRAQRTLPLVAVTGSN 122 Query: 118 GKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTT +M+ A G++NN +G+PLTL R+ + + ELGM+H GEI Sbjct: 123 GKTTVTQMIASVLRAWKGDAALATQGNFNNDVGLPLTLLRLRPAHEAAVVELGMNHPGEI 182 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +L + RP +A++ HL +E +A + L G D+F L Sbjct: 183 AYLAGIARPTVALVNNAQREHLEFMHTVEAVARENGSVLAALCAGGVAVFPAADAFTPLW 242 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + G +FG AD + + + VQ + + + G H N Sbjct: 243 RE---LAGAHRCITFG-GDAADVRCAHAQWQDGAWHLRVQTPQGAFDTLLSIAGRHNVTN 298 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L A + + L+ F P +GR + + ++D+SYNANP S++A Sbjct: 299 ALAAAACALAAGAPLAAIARGLAAFEPVKGRSRAFAVRCQGRAIAVVDDSYNANPDSVRA 358 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI VL+++ G R+ VLGDM E+G FH + I V+ G + Sbjct: 359 AIDVLAELP----GPRLLVLGDMGEVGGQGPQFHAEAGAHARSRGIEQVFALGALSAHVA 414 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLLEE 467 A + E M L +++ L G V+VK S R++ + EE Sbjct: 415 GA-------RHFEDMASLIAAVRAQL-PGVGSVLVKGSRFMKMERVVQAIEEE 459 >gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M01-240013] Length = 479 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 28 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 84 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA R + ITGSVGKT Sbjct: 85 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 140 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 141 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 200 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 201 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 260 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 261 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 316 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 317 AAAAALSLAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 373 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 374 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 429 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 430 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 479 >gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] Length = 826 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 112/471 (23%), Positives = 188/471 (39%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + I G + ++ + DSRS+ + FFA+K DGH++I Sbjct: 1 MN--YTIEKVTTLIGARRYG-DKEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIP 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV T + V L AL +LA R I+ ITGS Sbjct: 58 ELYGRGVRNFVVETVPEDWNRRYPDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ + + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMSA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V T + AH NF ++ K +F + DD Sbjct: 178 LHDIIQPTIGVFTCLGSAHQENFPSLDAKCREKLHLFHDTQAIVYSL---DDEVLNRCLD 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G K +S K + K+ E + GK + I N + Sbjct: 235 EYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVVNSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + +++ P R Q TLI++SYN++ S+ A+ Sbjct: 295 TCAVTALQLGVTPAALGERMALLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H RR +L D+ + G+ + + +A + + G +L + A Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSA 411 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ T++ + ++L +V+++K + GF RL LL+++ Sbjct: 412 FRHLGKKHFFATVNAFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461 >gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491] gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491] Length = 452 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 471 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 110/468 (23%), Positives = 186/468 (39%), Gaps = 20/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + A+ V +G+ DSR + E FF I G +DGH F ++K Sbjct: 3 MNLEQIRDALGAVGTLGGADMTVPSGVQTDSRCVRDGELFFCISGERFDGHTFAAEVLEK 62 Query: 64 GAGLVVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA VV PV V D + AL +LA+ R+ + A + ITG+ GKT Sbjct: 63 GACAVVAERPPFSMDEMQDRQDRPVLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKT 122 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KE+L LS T + NN IG+PL++ D F + E G+S ++ L Sbjct: 123 TVKELLAHVLSVRGATARNHLNRNNQIGLPLSMLAATGDERFWVMEAGISQAADMDELGS 182 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +AV+ + HLS + +A KA + + + + G ++ D L Sbjct: 183 VLRPDLAVVLNVGQGHLSGLGD-KGVAHYKARLLKHIARGGVGLVSADYPDL--LAEARK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G ++S F + V+L+ + E G + A+N++ Sbjct: 240 NCGELRLFSAVDPAVPYFCEYAGPAGEGRGLYRVRLESREFETEAPFRGAYGAENVIAVA 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 IL + L + R R G + +ID++YNANP S + Sbjct: 300 AAAHILGLTSAEIAEGLRTAELPQQRFNCRR----YGRWLVIDDTYNANPLSAGRMVEST 355 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419 ++ + + V+G+M E+GE + H +L L + V+ G H +++ L Sbjct: 356 AENA--CGEPVVFVMGEMLELGEAAAQAHTELGRALGRACPAAVFWKGGHGGHVQEGLHA 413 Query: 420 RSIHVHYSETMDGLFLFIQSS----LVDGDVVVVKSSNSCGFYRLINL 463 + + + F+++ + G V+ K S S Sbjct: 414 EGWNGPFVP-VADAGAFLRAFGALGIASG-TVLFKGSRSNRLETFAEA 459 >gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J139] gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J139] Length = 485 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 117/483 (24%), Positives = 183/483 (37%), Gaps = 33/483 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + I +R + P F A+ G DGHDF A Sbjct: 1 MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIGTRKVTPGALFIALPGTRVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+V A +P VDD L++LA R R IA+TGS Sbjct: 59 QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IGVPLT R + F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229 +LT +V P +A++ + AHL F E IA AK EI E L G LN Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A A+ + + + V Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ I A ++ + R + L+ Sbjct: 293 GAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + + R +AVLGDM E+G+ S + + + Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G + + T++ + DVV++K+S Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRL 460 R+ Sbjct: 471 ERV 473 >gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 838 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 112/486 (23%), Positives = 204/486 (41%), Gaps = 31/486 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ ++ + ++I +G P ++ + DSRS+ + FFA+ DG +I Sbjct: 1 MS--YSIESITESIGARRMGNAP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIT 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLS---------------IPVFGVDDVLGALNKLAVAAR 103 +G V++ + + + + V + L AL KLA R Sbjct: 58 DLYARGVRNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHR 117 Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 + + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + Sbjct: 118 NQFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELA 177 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 IFE G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + + Sbjct: 178 IFEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VV 234 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD F AKS + +S K + K ++ + + + + Sbjct: 235 IYNGDDEFVSNCVAKSMLSAREIAWSR-KDMERPLYISKVEKRDDCTVISYRYLDMDNTF 293 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 I +N L L L + + ++ P R + LI+ Sbjct: 294 TLPFIDDASIENSLNCLAACLYLMLPAEQITERMARLEPI---AMRLEVKEGKNNCLLIN 350 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +SYN++ S+ A+ L + S RR VL D+ E G+ + + + +A++++ I Sbjct: 351 DSYNSDLGSLDIALDFLYRRSQSKGLRRTLVLSDILETGQNTPTLYRQVAQLVNSRGIER 410 Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLI 461 + G + + +I + L IQ L + +++++K + GF L Sbjct: 411 IIGVGNEISSCAARF--NIEKTFYPDTAALIRAIQRGELRLENEIILIKGARKFGFDSLT 468 Query: 462 NLLLEE 467 +L ++ Sbjct: 469 EVLEKK 474 >gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha153] Length = 452 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL +A A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVDPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLASVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAVALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis 961-5945] Length = 452 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMEMEEVVEALEDK 452 >gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 455 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 128/472 (27%), Positives = 194/472 (41%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + Q + V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQTLN--LPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSHEDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLKEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G +IA AK+EI++GL + + Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTLDIAKAKSEIYQGLGED----GLALIPCEDEHA 229 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + D ++ + VV G H N Sbjct: 230 AVFQTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAATALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L + L + V+VK S ++ L + Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTNK 452 >gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Spirochaeta coccoides DSM 17374] gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Spirochaeta coccoides DSM 17374] Length = 477 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 191/450 (42%), Gaps = 26/450 (5%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSL 81 F+ ++IDSRS F A+ G DGH +I A+ +GA V+++ + + Sbjct: 34 FIRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRT 93 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + L AL ++A T I ITGS GKTTTKEML LS T Sbjct: 94 GTWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQEFPTVKTP 153 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+YN+ +G+PL+L ++ +G+FE+G+ H+GE+ + ++ P+ AV+T I +H Sbjct: 154 GNYNSTLGLPLSLMQIGDHHKYGVFEMGIDHIGEMDTMLGMLAPNHAVLTNIGISHAEKL 213 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 I I + K ++ + + ++ A + G + D L Sbjct: 214 GSISAIMTEKGKLLKNARNGYFMGMDEPSRKAMEHIAGHPQGFWGIHATEGVTGIRDEGL 273 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 W + + E+ IG H ++ L + + L + L Sbjct: 274 LGWTIIYQGT-----------EIHVPAIGKHSLKDALAAISVARHLGVGEEFIKHGLEKV 322 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 EG R + G T+I++ YNA +S + + ++ + +G + VLGDM E Sbjct: 323 ENLEG-----RSRVVSGDVTVIEDYYNAAASSTTSILDFMA--ATSWKGDKKVVLGDMKE 375 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFI 437 +G S H + L L + S V+L G + L + YS+ + + Sbjct: 376 LGRYSDRAHEMIGRRLLLASPSSVFLYGTDTKKTWNILRSGGYAGQLVYSDDEHEVNRAL 435 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ GD+V+VK S + + ++ + Sbjct: 436 ERNIHRGDLVLVKGSRGMAMEKFLPVITAK 465 >gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium gallicum DSM 20093] gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium gallicum DSM 20093] Length = 535 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 133/534 (24%), Positives = 202/534 (37%), Gaps = 76/534 (14%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF----------------VNGISIDSRSIAPQEAFF 44 M P+ T + QAI + Q + IDSR F Sbjct: 1 MMPM-TLERVAQAINATLVPASVQSEHGSPVDPSSASPSSAIPTNVVIDSRQAHEGSLFV 59 Query: 45 AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104 AI G H DGH ++ GA +V+ + I S+ VDD + AL +LA Sbjct: 60 AINGEHADGHAYVATLGDSGALAAIVDHE----IPQSSVVQLVVDDTVKALGELARHNLA 115 Query: 105 R-----------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 + + +I+ ITGSVGKTTTK++L L + +T A +GS+NN +G+PLT Sbjct: 116 QRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGELGETVAPVGSFNNELGLPLTA 175 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 ++ F I E+G +HLGEI LTH+ P +AV+ + AHL F +E IA AK+EI Sbjct: 176 LQVGPSSRFLIAEMGANHLGEIANLTHIAPPDVAVVLKVGNAHLGEFGSVERIAQAKSEI 235 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--W 271 G G LN DD + A + L + + + + Sbjct: 236 VRGEVPGGMTILNADDPHVAAMDAIAPGLVRWFGLEHATEHDDYVTADHVRMDDDGHAVF 295 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH--PKEGRGKR 329 Q G +V G H N L + + ++ L Sbjct: 296 TLRQSDGAYQQVRLGIPGAHNVMNALAATAVAQYFGLPLRHIVQVLEQVRAISPHRMAIS 355 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + FTLID+S+NANP SM+A I ++ + RIAVLG M E+G + H Sbjct: 356 IVRRPERPEFTLIDDSFNANPDSMRAGIDGIAAFNAAEPMLRIAVLGAMLELGPDETALH 415 Query: 390 IDLAEVLSLYNISHVWLSGFHVLAL-------------------------------KDAL 418 + + ++ V G A D Sbjct: 416 EAIGKYAVEQSVDAVIAVGNSNDAHLMTLATALAAGARDAHTADGAASVAEAELQPADLA 475 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVVKSSNSCGFYRLINL 463 ++ + + + D + + L VV++K S++ G L Sbjct: 476 TATVPIAVASSTDEAEQMLDAILAAHHPDGSTADNTVVLLKGSHASGLASLAEH 529 >gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] Length = 477 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 124/446 (27%), Positives = 206/446 (46%), Gaps = 20/446 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81 ISIDSR I +E F AIKG ++DGH+FI +A+++GA ++ + +L Sbjct: 42 EFERISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIV 101 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 V + + A++ +A R R + +I ITGSVGKTTTKE+L L +T + Sbjct: 102 FGTDFSFIKVPNTILAMHDIARGFRQRIE-KVIGITGSVGKTTTKEILKTLL-KGYQTVS 159 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NN IG+PL+L R + FGIFE+ M GEI L + P I +IT IA +H+ Sbjct: 160 TFGNFNNEIGLPLSLFRAKKNDKFGIFEMAMRSKGEISQLCSIAMPDIGIITRIAESHIG 219 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 +E IA AK EI + ++ F K K + FGK +D Sbjct: 220 LLGSMENIARAKGEILDFVDSAFLNFNCKYSRKIFGEMLKDKKGKPKEVIWFGK--ESDL 277 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ + S +E+ + + + I + +L ++ + L D + L Sbjct: 278 YIKSHEIFIHGSRLELSGRFGNFVLRAPNIFLPQFEPLLASVAVARFLGLDWNEINDNLQ 337 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 +HP +GR G +ID+SYNA S + + + G R+I V GD+ Sbjct: 338 GYHPLQGRF----LIKKLGDQIVIDDSYNATCTSFLKGLETIKSLK-FGNRRKIFVFGDI 392 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFI 437 E G+ S+ H + + + + V+ G ++ R+ + + +D + + Sbjct: 393 LEAGDKSRDLHKKVIKKIEELDPFLVYFVGTE---FVKSVGRNSKLRFKNLGIDEVKEDL 449 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463 L D+V +K SNS ++++ L Sbjct: 450 AKILSKEDLVYIKGSNSTKTWKVLEL 475 >gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 466 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 123/443 (27%), Positives = 202/443 (45%), Gaps = 31/443 (6%) Query: 36 SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVL 92 F + G DGH+FI A+ KGA +V + V + L Sbjct: 39 EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPVKNTL 97 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVP 150 AL KLA R R +IA+TGS GKTTTKE+L L +++++ +YNN IG+P Sbjct: 98 TALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLP 157 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 TL ++ + ELGM+H GEI L+ + +P A+ITTI AH+ + IA AK Sbjct: 158 FTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAK 217 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EI EGL+K G +F + ++LK K+ G K + + + + Q + E Sbjct: 218 GEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSEKIFSILQKKSSGFLLE-- 275 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 K+ ++ + G + +N+ + + + + + + + F Sbjct: 276 -------YKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSFKSSNK----- 323 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 R L G +++I+++YNAN SM +++ V Q++ AVLGDM E+GE S+ FH Sbjct: 324 RLDLQNGKYSVINDTYNANYESMISSLEVADQLA--DGKEFYAVLGDMKELGEYSKEFHK 381 Query: 391 DLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLV-- 442 L + S N+ ++ G +++ + H+ T +GL I L Sbjct: 382 KLGKKCSEFQNLKGLYTFGTDAFWIQEEFVKRTSSPRFSEHFPGTQEGLSELIHKFLQTI 441 Query: 443 -DGDVVVVKSSNSCGFYRLINLL 464 +G +V+ K+S R + L Sbjct: 442 PEGSIVLAKASRGIQLERFVEAL 464 >gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria cinerea ATCC 14685] gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria cinerea ATCC 14685] Length = 452 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 204/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQALN--LPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAILRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A +FG + D ++ + VV G H N Sbjct: 234 ---MATLNLNTRTFGI-DSGDVHAENIMLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057] gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057] Length = 834 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 112/482 (23%), Positives = 206/482 (42%), Gaps = 27/482 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ ++ + +++ +G VP ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YSIESITESMGARRVGSVP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLS-----------IPVFGVDDVLGALNKLAVAARLRSK 107 +G VV+ + I S + V + L AL KLA R + + Sbjct: 58 DLYARGVRNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQ 117 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I ITGS GKT KE L +S + SYN+ IGVPL++ +M + IFE Sbjct: 118 IPVIGITGSNGKTIVKEWLHQLISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEA 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + + N Sbjct: 178 GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFKNCD---VVIYNG 234 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD F AKS + +S K + K ++ E + + + Sbjct: 235 DDEFISNCVAKSMLSAREIAWSR-KDMERPLYISKVEKKEECTVISYRYLDMDNTFTLPF 293 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I +N L L L + + ++ P R + LI++SYN Sbjct: 294 IDDASIENSLNCLAACLYLMLPAEKITERMAKLEPV---AMRLEVKEGKNGCLLINDSYN 350 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++ S+ A++ L + S +R VL D+ E G+ + + + +A++++ I + Sbjct: 351 SDLGSLDIALNFLYRRSLVNGLKRTLVLSDILETGQNTPTLYRQVAQLVNSRGIERIIGV 410 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLINLLL 465 G + + + + L I+ L + +++++K + GF L +L Sbjct: 411 GNEIATCAARF--DVEKSFYPDTNTLIRAIERGELRLENEIILIKGARKFGFDALTEVLE 468 Query: 466 EE 467 ++ Sbjct: 469 KK 470 >gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter irgensii 23-P] gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter irgensii 23-P] Length = 418 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 117/434 (26%), Positives = 189/434 (43%), Gaps = 35/434 (8%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 D+RSI FFA+KG +++G+ F A+ +GA L +++ + VD+V Sbjct: 18 TDTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIIDDAAYFTGPKT----ILVDNV 73 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L L LA R + K ++A+TGS GKTTTKE+++ LS +T A G+ NNHIGVPL Sbjct: 74 LETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHGNLNNHIGVPL 133 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 TL M + GI E+G +H EI FL L P IT AHL F G+E + K+ Sbjct: 134 TLLSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITNFGKAHLEGFGGMEGVVMGKS 193 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E++ L + K A + + Sbjct: 194 ELYTFLHTHQKTAFINPKDALQKEKTTDIA----------------HVYFPESITFKSAA 237 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 V++ + +E+ + +G + N+ + I A+S + P R + Sbjct: 238 PFVKVAFEDLEIQSNLVGDYNYANIAAAIAIGLYFKIPKQEIKTAISEYVPSNNRSQIIH 297 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 A NQ L+ ++YNANP+SMKAA+S + + + +LGDM E+G + H + Sbjct: 298 TANNQ----LLLDAYNANPSSMKAAVSNFANLKAAFK---TVILGDMFELGTTAAEEHQE 350 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVK 450 + + + + G P+ +T + L + + L +++K Sbjct: 351 MVDFTDACCFENTYYVGALFSGTTTKNPQ------FKTFEALEKHLHAQPLRKNS-ILIK 403 Query: 451 SSNSCGFYRLINLL 464 S RL+N+L Sbjct: 404 GSRGMRLERLLNVL 417 >gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M04-240196] Length = 452 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A+I AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALINNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----VDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845] gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845] Length = 826 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 194/471 (41%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + I G ++ + DSRS+ + FFA+K DG ++I Sbjct: 1 MN--YTIEKVTTLIGARRYG-DKDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIP 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV + V L AL +LA R I+ ITGS Sbjct: 58 ELYARGVRNFVVEVVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ + + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMMA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V TT+ AH NF +E K ++F T I + D+ + Sbjct: 178 LRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH---DTEAIVYSADNEVMAQCLS 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G K +S ++ A + K+ E + V + I +N + Sbjct: 235 QYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVENSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L T + ++ P R Q TLI++SYN++ S+ A+ Sbjct: 295 TCAVVSLHLGLTPATISERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H RR +L D+ + G+ + + +A + + G +LA + A Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQRSA 411 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 H+ T++ + ++L +V+++K + GF RL LL+++ Sbjct: 412 FKHLGEKHFFATVNSFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461 >gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] Length = 952 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 114/440 (25%), Positives = 191/440 (43%), Gaps = 21/440 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+G+S D+R I P E F A+ G ++D H+++ A +GA + ++ +P Sbjct: 513 VSGVSTDTRRIGPGELFVALVGENFDAHNYLDQAEGRGACA----AVVAHAVSDSKLPQL 568 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143 + D AL ++ A R + ++A+TGS GKTTTKEM++ A G+ Sbjct: 569 VLGDTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAMLAEWQGESGRLATAGNL 628 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL R+ + +FELGM+H GEI L + P + ++T H + Sbjct: 629 NNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQEFMHTV 688 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A L G D+ + + A + + FG D + Sbjct: 689 EAVAHENGAAIAALPDDGVAVYPGDEPYCAIWDA---LAEPRRVLRFGLQPGLDVYAEQI 745 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + V ++ G H +N L + +D A++ALS F P Sbjct: 746 LADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRALSRFAPV 805 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 GR + + + LID++YNANP S++ AI VL++I+ G R+ VLGDM E+G+ Sbjct: 806 AGRMQHKKMSDG---TLLIDDTYNANPDSVRVAIDVLARIA----GTRVLVLGDMGEIGD 858 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H ++ + + + A H ++D + ++ L Sbjct: 859 NGPALHAEVGNYAREQGLDALITL--GEASRAAAAAYGAGAHACASVDEVVAALRG-LRP 915 Query: 444 GDVVVVKSSNSCGFYRLINL 463 V++K S R++ Sbjct: 916 SS-VLIKGSRFMRMERVVTA 934 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 88/487 (18%), Positives = 159/487 (32%), Gaps = 48/487 (9%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P+ T + + + + +DSR I P + F A G DG +I A+ Sbjct: 9 TPVATVAETVAWLHARVSLTA------HLKLDSRDIEPGDVFVACPGLSSDGRLYIDKAL 62 Query: 62 QKGAGLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 GA V+ ++ + S P+ V + L +LA R ++A+TG+ Sbjct: 63 ALGASAVLFEAPGSDALQAAAGSTPMLPVTGLRALLGELADTWYGRPSAALAVVAVTGTN 122 Query: 118 GKTTTKEMLTIALSSIKKTY----------ACIGSYNNHIGVP-----LTLARMPVDVDF 162 GKT++ + + ALS K + + P D Sbjct: 123 GKTSSVQWIAHALSRNDKPCGTIGTLGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGA 182 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + S +G + VR +A T + HL +E A Sbjct: 183 QAVAMEASSIGIEQGRLDGVRVALAAFTNLTRDHLDYHGTME-RYEAAKARLFNWPGLTA 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKS 280 +N DD L A YS S + + R + S+ + Sbjct: 242 AVVNADDEAGRRLLATLPTGMAAMGYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGE 301 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 ++V +G H N+L+ G++ L + L+ P +GR + + Sbjct: 302 AQIVTRLLGAHNVSNLLLVAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSS 361 Query: 341 -----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 L+ Y P ++ A++ L ++ GR I + G GE ++ + Sbjct: 362 AGRGALVVVDYAHTPDALSRALTALRAVAVARSGRLICLFG---CGGERDPGKRPEMGRI 418 Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + HV +S + + +P + +V + S DV Sbjct: 419 AAQL-ADHVVVSSDNPRTESPQDIIDQILAGIPPAANVDVQVDRARAIMQTIWSASPDDV 477 Query: 447 VVV--KS 451 V++ K Sbjct: 478 VLLAGKG 484 >gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida U112] gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112] gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] Length = 452 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S +++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRVTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + TL+D++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 + +G+R+ + M E+G+ ++++H + + L N+ V+L G +++ A Sbjct: 344 DEF----DGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + + VK + S ++ + E Sbjct: 400 PAQNAKYYESKDELNNDLLKVLNEYKSQNTKLTVKGARSFKMEEVVKFVKE 450 >gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] Length = 493 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 172/477 (36%), Positives = 235/477 (49%), Gaps = 31/477 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LW + +A+ G V G+ +DSR + + F A+KG DGH F+ A Sbjct: 26 LWHSKAIAEAVGGT---ASSDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDKAFAN 82 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V+ + P V+D AL LA AAR R++A II +TGSVGKT K Sbjct: 83 GAAAAIVDRP-------VDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTGVK 135 Query: 124 EMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 E + +L + + SYNNH+GVPL+LARMP FGIFE+GM++ GEI LT Sbjct: 136 EAIFASLERASRGAAHRSTRSYNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEGLTTQ 195 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRPH+AVITTIAPAH+ N +E IA AKAEIF GLE G + D FE L+ + Sbjct: 196 VRPHVAVITTIAPAHIENLGSMEAIADAKAEIFAGLEPGGVAVIPADSEHFERLRLAALR 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------EVVHHGIGYHMAQN 295 + SFG++ NAD +L + + G G H N Sbjct: 256 MSASV-VSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAEPGDHWVIN 314 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + V D+ A AL+ +GRG R+ G LIDESYNANPASM Sbjct: 315 SLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPASM-- 372 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + L+Q+ RRIAVLG M E+G+ + FH L+E L ++ + L G + AL Sbjct: 373 -RATLAQLGQTPSSRRIAVLGSMKELGDFAAKFHAGLSEPLIAADVDYALLVGDEMRALA 431 Query: 416 DALPRSI--------HVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 L + + + + +Q +V GD V+VK SNS G +L++ Sbjct: 432 RELGKPAFNSLGNPLEWEHCNSAEEAIGLLQEFGIVAGDAVLVKGSNSVGLGKLVDH 488 >gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium diphtheriae NCTC 13129] gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium diphtheriae] Length = 496 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 124/498 (24%), Positives = 195/498 (39%), Gaps = 39/498 (7%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T + + + G G P+ V G + DSR ++ F A+ G DGHDF+ Sbjct: 1 MIDL-TVEQIARIVGGTLTQGTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVP 59 Query: 59 HA---------------VQKG-AGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNK 97 A + G A +VV + S +D VL + Sbjct: 60 AALESGAAAALVAHPVKIDSGLAPAIVVPPATGQQQSANSYATEHDEDGSVAAVLQGMGL 119 Query: 98 LAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 +A T++ +TGS GKT+TK+ML LS+ T A GS+NN IG P T Sbjct: 120 IARRVIDTLTAQGLTVMGVTGSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHPYTAL 179 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 R + + E+ +G I L + P I V+ + AHL F E IA AK E+ Sbjct: 180 RCTEQTRYLVAEMSARGIGHIAHLAQIAPPKIGVVLNVGTAHLGEFGSREVIAQAKGELV 239 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E L G LN DD ++ ++ A I +F + + + + Sbjct: 240 EALPHDGVAVLNADDDLVAGMRTRTDAKVI----TFSANSQDADVYATDIELDDYARARF 295 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 L E V Q + A + A ++ + R Sbjct: 296 TLHIGEAENVVTLRVAGQHQVSNALAATAAAYAAGIAIDDIAEALSNHLGASAHRMALMH 355 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMCEMGELSQSFH 389 T+ID++YNAN SM+A ++ LS + + AVLG M E+GE S + H Sbjct: 356 RSDGATIIDDAYNANTESMRAGLTALSTTAHNKSHKGEASHAWAVLGPMSELGEESVAAH 415 Query: 390 IDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446 ++ +L N+ + + G LAL D R ++ + + ++ DV Sbjct: 416 EEIGRLLGELNVHGLIVVGDSADSLALADGARRSNVTTLMARDTAEAADLLDQNMGSADV 475 Query: 447 VVVKSSNSCGFYRLINLL 464 +VK+SN+ + +L Sbjct: 476 ALVKASNAYRLWETAEIL 493 >gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] Length = 956 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 113/437 (25%), Positives = 189/437 (43%), Gaps = 23/437 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 +SIDSRSI P F AIKG YDGH ++ ++ + + S + V+ Sbjct: 539 LSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFSEENSYYQVE 598 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L + + A IA+TGS GKTT KE++ L S + + NN IG+ Sbjct: 599 NCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVLKTLANENNIIGL 658 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 T+ R+ + + IFELG +H GEI L + P I +I I P+HL F E + Sbjct: 659 CKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGIILNIGPSHLEYFGDEEGVFRE 718 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K +F+ DD F+ L + S G ++N+D+++ + K + Sbjct: 719 KITLFKRPL--ALRLYPGDDFRFDYLANE--------GISIGYNENSDYRITRHKCNKDN 768 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + H A N + + L D + AL+ E R Sbjct: 769 QSFYLNEDLWF----LPYGAPHYAINSAFAIVLGLKLGIDKEKMQTALNKPIQLELRN-- 822 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 +G LI + YNANP SM+ A+ +++P A+LGDM E+GE S +H Sbjct: 823 --QVEKRGTGLLILDCYNANPYSMQKALEYWQELNPEQP--HYAILGDMLELGESSILYH 878 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLVDGDVVV 448 ++ +L+ ++ G + + + + T++ L + +SL + +++ Sbjct: 879 QMISAMLAEMRYEKLYTVGNYSRIYHP--EKESPIFHYNTVEELIADRKLNSLPENAIIL 936 Query: 449 VKSSNSCGFYRLINLLL 465 VK S++ R+I +L Sbjct: 937 VKGSHAIQLERVIPILK 953 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 95/452 (21%), Positives = 160/452 (35%), Gaps = 48/452 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I P + F I+G ++DGH+FI A++KGA ++V I IP V Sbjct: 38 VQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGAAIIVC-----REINKRDIPYIKVK 92 Query: 90 DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNH 146 D A +A + T+I ITG+ GKTTT +L AL ++ + Sbjct: 93 DTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGTLGYYI 152 Query: 147 IGVPLTLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 G R D VD+ + E+ S + V+ + + Sbjct: 153 EGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEV--SSHSLSLDRIYGVKFDYCLFSN 210 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL +E AK FE K G+I + F + +YS G Sbjct: 211 LGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVYSLG 270 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 +A+FQ K S ++ + + V IG QN+ +T+ + L + Sbjct: 271 -GNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSPE 329 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +L P +GR +R N G F Y P ++ + + + Sbjct: 330 AIHNSLKDIPPVQGRLERVENNFNIGIFID----YAHTPEAIDNVLKAVEDLPHKR---I 382 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVH 425 + ++G G L +L + V +S + + +KD + S Sbjct: 383 LCLIGA----GGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFL 438 Query: 426 ---YSETMDGLFLFIQSSLVDGDVVVV--KSS 452 I + D+V++ K S Sbjct: 439 PWWIIRNRQQAISSIIRLAQEEDIVLICGKGS 470 >gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis ATCC 14018] Length = 576 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 139/545 (25%), Positives = 213/545 (39%), Gaps = 83/545 (15%) Query: 1 MNPLWTFHDLLQAIQGHSIGI------------------VPQGFVNG------ISIDSRS 36 M P+ + ++ A+ G ++ + DSR Sbjct: 17 MMPM-SVKEVAAAVNGRLFIGGCLVKENHSVTSEKFCITDNDVVISDNDVVIYATSDSRK 75 Query: 37 IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGAL 95 + F AI G DGHDF+ A + GA + +V + + I V++ + AL Sbjct: 76 VVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENSVEAL 135 Query: 96 NKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LA R + +II ITGSVGKTTTK+ML LS++ T A IGS+NN IG+P Sbjct: 136 GLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNEIGLP 195 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LT ++ + F I E+G +H+GEI LT + P +AV+ + AHL F +E IA AK Sbjct: 196 LTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERIAQAK 255 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKA-------KSHALGIKTIYSFGKSKNADFQLRKW 263 +EI GL G LN DD +++ + T F S N ++QL Sbjct: 256 SEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQLSAS 315 Query: 264 KQCSEQSWMEVQLQGKSMEV--------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 ++ + + E G H N + + ++D+ K Sbjct: 316 DISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLDSIAK 375 Query: 316 ALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------- 363 L + + + N FTLID+S+NANP SMKA I L Sbjct: 376 VLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHDLNVN 435 Query: 364 ------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------F 409 S RIAVLG M E+G + H + E ++ +NI + G Sbjct: 436 TEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNIDALIAVGSKFDKKLDE 495 Query: 410 HVLALKDALPRSIH---------VHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFY 458 + + V++ + + VV++K S++ G Sbjct: 496 LAGCIYKGAKDNWQNKSLDVENGVYFVHDCTEADNVVWNLVAAHSSSVVLLKGSHASGLS 555 Query: 459 RLINL 463 L Sbjct: 556 VLAER 560 >gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC 43184] gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii DSM 18315] gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC 43184] gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii DSM 18315] Length = 821 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 102/467 (21%), Positives = 179/467 (38%), Gaps = 16/467 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62 ++ ++ I + + V+ + DSR ++ Q FFA++ DGH++I + Sbjct: 3 YSIKEIAGIIGADA-QKLYDAPVSILLTDSRRLSFPEQSLFFALQTKTNDGHNYIQGLYK 61 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV+T + V D L AL KLA R R +I ITGS GKT Sbjct: 62 LRVRNFVVSTFLPEFESMPEANFLVVKDTLKALQKLAAHHRKRFNIPVIGITGSNGKTIV 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + SYN+ +GVPL++ +M GIFE G+S E+ L ++ Sbjct: 122 KEFLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSDKNTLGIFEAGISQPDEMERLQPII 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I VIT I AH NF I ++ + I+ D +++ + Sbjct: 182 APTIGVITNIGEAHQENF--ISSTQKCLEKLTLFNDCEAIIYDGDDAFIANCIESACLSH 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T A + K+ ++ + L G +N + + + Sbjct: 240 KAITWSR--TDSEAPLYIESIKKLDSETIIRCTLLGFDRTYTIPFTDDASIENAIHCMAV 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L I+ P R + N LI+++YN++ S+ A+ Sbjct: 298 MLYLKPTSVNDIEKFKRLEPVAMRLDVKQGINN---CLLINDTYNSDINSLDIALDFQQS 354 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + +L D+ + G L +S + +A+++ I + G + A I Sbjct: 355 RRVEKNLKCTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYGGAF--DI 412 Query: 423 HVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T D + +++++K S F R+ LL ++ Sbjct: 413 EKEFYLTTDEFIKSPSFKKF--KDELILIKGSRQFHFERISELLEKK 457 >gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens] Length = 606 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 120/492 (24%), Positives = 194/492 (39%), Gaps = 45/492 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W H + A+ G + G I D+R++ + F A+ G ++DGH F+ A +K Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAG---SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV N V+ D L AL LA R R ++ +TGSVGKTT Sbjct: 173 QCAGVVANWVPHGWSRG----FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228 Query: 123 KEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + M T + G++NN IGV LTL R+ + ELGM+H GEI L + Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288 Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P + V+ + PAH+ NF G+EE+A+AK EIF +N DD L Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP----LAMAVP 344 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----------------KSMEVV 284 + FG+ + +D +L K + + V L+ Sbjct: 345 LPAGVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG------- 337 + L + A A ++ + Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGP 464 Query: 338 ----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 +I++ YNANP S++A++ +L + + RIA+LGDM E+GE+S S H + Sbjct: 465 ASHVQILVINDCYNANPMSVEASLQLLQSVKSNR---RIALLGDMFELGEISLSSHKGIL 521 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 ++ + + V + G + + + L + + GD V+VK S Sbjct: 522 QLCVDFKLDLVIVVGTCFSEAAEYF-KGRDIIAFRNTSSLTNHLARFISPGDSVLVKGSR 580 Query: 454 SCGFYRLINLLL 465 L+ + Sbjct: 581 GMRMEVLVEAIK 592 >gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 478 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 132/487 (27%), Positives = 199/487 (40%), Gaps = 33/487 (6%) Query: 4 LWTFHDLLQA-----IQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 ++T D+LQ Q + P DSR + P + F AIKG DGH Sbjct: 1 MFTLADILQQSQDAQAQVQLVSTTTPDPVMTFTEAHHDSRQVKPGDLFIAIKGAKVDGHA 60 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-RLRSKATIIAIT 114 FI A Q GA + + V DV+ AL+ A A R + + T I IT Sbjct: 61 FIHKAAQAGASAALCTHPV--EDVPEGFLQIVVPDVVAALHATARARTRRQPETTYIGIT 118 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKT+TKE + L T + SYN IG PLTL R+ + + E+G +GE Sbjct: 119 GSNGKTSTKEAIAAVLERHAPTLKTLASYNTEIGYPLTLLRLEPQHRYAVLEMGAQWVGE 178 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 ++ L+ + P +VIT + +HL F E++ AK+E+ + L G LNYDD Sbjct: 179 LKMLSGITCPDWSVITNVGASHLGYFGSQEQVVIAKSELVQVLSPDGIALLNYDDPNVRA 238 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + K+ A I G A + Q + + V H G H Sbjct: 239 MNTKTSARVIYYGQGEGADVRASKPGGDQLF---GRSFVLSYQDQEVPVQLHIPGEHGIA 295 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 L + +D +AL P + R TLID+SYNAN S+ Sbjct: 296 IALAAAAVGCAAGLPLDVIRQALEDLKPAKRR---GEIKPGPNGSTLIDDSYNANRQSIL 352 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 A + + G+R AVLGD+ E+G+ ++ H L+ + ++ G Sbjct: 353 AIAQAMHGSTLAPHGKRWAVLGDILELGQYAREEHRTCGAALASL-VDYIVAIGEQARFF 411 Query: 413 ---ALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 A++ LP+ YS ++ ++ + D+V++K+S G Sbjct: 412 IEGAIEAGLPQDHAYFYSADLENSAEVEASKRAAADLLKEQVRGDDLVLIKASLGLGMDT 471 Query: 460 LINLLLE 466 LI L E Sbjct: 472 LIKQLSE 478 >gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis ES14902] Length = 452 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + A++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P+ A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium gilvum PYR-GCK] gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium gilvum PYR-GCK] Length = 504 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 121/500 (24%), Positives = 199/500 (39%), Gaps = 36/500 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M + + + + + G + V G + DSR++ F A+ G DGHD Sbjct: 1 MIEM-SLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLA-------------- 99 F AV GA V+ + + G L A Sbjct: 60 FAATAVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARL 119 Query: 100 ----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 A + TI+ ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R Sbjct: 120 AAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLR 179 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 D+ + E+ H G I L + P I + + AHL F E IA+ K+E+ + Sbjct: 180 ATESTDYLVLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSREAIAATKSELPQ 239 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + ++G + LN DD + K+ A ++ S + + Sbjct: 240 AVPQSGVVILNADDPVVAAMADKTAARVVRVGRSADARTLDVRADGVTLDPLARPAFTLH 299 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 G+ + V G H N L+ + A + AL+ P R + + Sbjct: 300 AGGEQVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAAAGPV--SRHRMQVSTR 357 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLA 393 T+I+++YNANP SM A + L+ +S R AVLG+M E+GE + + H + Sbjct: 358 SDGVTVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMAELGEDTITEHDRIG 417 Query: 394 EVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++S + + G + A+ D ++ L GDVV Sbjct: 418 RLAVRLDVSRLVVVGSGRPMSAMLHGAVMEGSWGSEATPVADADAALALLRDELRPGDVV 477 Query: 448 VVKSSNSCGFYRLINLLLEE 467 +VK+SNS G L + L+ E Sbjct: 478 LVKASNSAGLGALADALVSE 497 >gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens] Length = 606 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 120/492 (24%), Positives = 194/492 (39%), Gaps = 45/492 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +W H + A+ G + G I D+R++ + F A+ G ++DGH F+ A +K Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAG---SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 VV N V+ D L AL LA R R ++ +TGSVGKTT Sbjct: 173 QCAGVVANWVPHGWSRG----FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228 Query: 123 KEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + M T + G++NN IGV LTL R+ + ELGM+H GEI L + Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288 Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P + V+ + PAH+ NF G+EE+A+AK EIF +N DD L Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP----LAMAVP 344 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----------------SMEVV 284 + FG+ + +D +L K + + V L+ Sbjct: 345 LPAGVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF------ 338 + L + A A ++ + Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGP 464 Query: 339 -----FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 +I++ YNANP S++A++ +L + + RIA+LGDM E+GE+S S H + Sbjct: 465 ASHVQILVINDCYNANPMSVEASLQLLQSVKSNR---RIALLGDMFELGEISLSSHKGIL 521 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 ++ + + V + G + + + L + + GD V+VK S Sbjct: 522 QLCVDFKLDLVIVVGTCFSEAAEFF-KGRDIIAFRNTSSLTNHLARFISPGDSVLVKGSR 580 Query: 454 SCGFYRLINLLL 465 L+ + Sbjct: 581 GMRMEVLVEAIK 592 >gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis ATCC 14019] gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis ATCC 14019] Length = 577 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 139/545 (25%), Positives = 213/545 (39%), Gaps = 83/545 (15%) Query: 1 MNPLWTFHDLLQAIQGHSIGI------------------VPQGFVNG------ISIDSRS 36 M P+ + ++ A+ G ++ + DSR Sbjct: 18 MMPM-SVKEVAAAVNGRLFIGGCLVKENHSVTSEKFCITDNDVVISDNDVVIYATSDSRK 76 Query: 37 IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGAL 95 + F AI G DGHDF+ A + GA + +V + + I V++ + AL Sbjct: 77 VVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENSVEAL 136 Query: 96 NKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 LA R + +II ITGSVGKTTTK+ML LS++ T A IGS+NN IG+P Sbjct: 137 GLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNEIGLP 196 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LT ++ + F I E+G +H+GEI LT + P +AV+ + AHL F +E IA AK Sbjct: 197 LTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERIAQAK 256 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKA-------KSHALGIKTIYSFGKSKNADFQLRKW 263 +EI GL G LN DD +++ + T F S N ++QL Sbjct: 257 SEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQLSAS 316 Query: 264 KQCSEQSWMEVQLQGKSMEV--------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 ++ + + E G H N + + ++D+ K Sbjct: 317 DISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLDSIAK 376 Query: 316 ALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------- 363 L + + + N FTLID+S+NANP SMKA I L Sbjct: 377 VLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHDLNVN 436 Query: 364 ------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------F 409 S RIAVLG M E+G + H + E ++ +NI + G Sbjct: 437 TEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNIDALIAVGSKFDKKLDE 496 Query: 410 HVLALKDALPRSIH---------VHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFY 458 + + V++ + + VV++K S++ G Sbjct: 497 LAGCIYKGAKDNWQNKSLDVENGVYFVHDCTEADNVVWNLVAAHSSSVVLLKGSHASGLS 556 Query: 459 RLINL 463 L Sbjct: 557 VLAER 561 >gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare] Length = 415 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 118/423 (27%), Positives = 199/423 (47%), Gaps = 23/423 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + D+R I+P F A+KG +Y+ ++F A+ KGA V+++ + + + V+ Sbjct: 16 VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTDEN---KMLLVN 72 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 + L AL +LA R + IIA+TGS GKTTTKE++ + LS KT A IG+ NNHIGV Sbjct: 73 NSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNLNNHIGV 132 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL + D D I E+G +H EI L + P IT AHL F GIE + Sbjct: 133 PLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFGGIEGVIKG 192 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E++ L+ D + K + + + + Sbjct: 193 KSEMYTYLKTHNKTAFVNLDDSIQEEKTQHINR--------YTFSTDNNKKANIIINKIE 244 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + V+++ +E+ + IG + + N+ + + I + +A+ + P R + Sbjct: 245 ANPFVKIKYNGIEIQSNLIGIYNSNNINVAISIGTYFNVSEQDIKQAIENYIPANNRSQL 304 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 N+ +I ++YNANP+SM AAIS Q+ +G +IA LGDM E+GE S + H Sbjct: 305 IEKGNNK----IILDAYNANPSSMAAAISNFQQL----DGSKIAFLGDMFELGEESLTEH 356 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + E + + + + G + + H+HY + + + + + +++ Sbjct: 357 KKIIESILNHTSINFYFIGKN---FYSSKIEKEHIHYYTSFEDFVENKPNGINNN-TILI 412 Query: 450 KSS 452 K S Sbjct: 413 KGS 415 >gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis alpha710] gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis OX99.30304] Length = 452 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL +A A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A+I AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALINNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] Length = 857 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 107/471 (22%), Positives = 185/471 (39%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + + DSRS+ + FFA+K DGH +I Sbjct: 33 MT--YTIEKVTTLIGARRFGAS-DAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIP 89 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + V + L AL +LA R I+ ITGS Sbjct: 90 ELYRRGVRNFVVTEVPADYATEYAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSN 149 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L L SYN+ +GVPL++ + GIFE G+S GE+ Sbjct: 150 GKTMVKEWLNQLLCDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEAGISQPGEMLA 209 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NF E K +F T+ N DD Sbjct: 210 LRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILFH---DAKTVVYNGDDPIVNGCVN 266 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + ++ K K A F ++ ++ + + +G I N Sbjct: 267 ELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSF 326 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L VD + + P R Q TLI++SYN++ S+ A+ Sbjct: 327 ACAAVALTLGVGVDVLDERMQQLEPI---AMRLEVKQGQHGCTLINDSYNSDINSLDIAL 383 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + G + + ++ + + G + + Sbjct: 384 DFMNRRPDHQGRRHTLILSDIYQSGMTTDELYQEVGMLCQQRGVEKFIGVGKDLQSHAHC 443 Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ E+++ L + L +V+++K + GF +L LL+++ Sbjct: 444 IGVKAK-YFFESVEELIDSDVFKQLH-DEVILIKGARRFGFDQLTELLVQK 492 >gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase (UDP-MurNAc-pentapeptide synthetase; D-alanyl-D-alanine-adding enzyme) [Neisseria meningitidis WUE 2594] Length = 452 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL +A A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQMVAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492] gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36] gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492] gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36] Length = 841 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 115/489 (23%), Positives = 206/489 (42%), Gaps = 34/489 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ ++ + ++I +G VP ++ + DSRS+ + FFA+ DG +I Sbjct: 1 MS--YSIESITESIGARRVGNVP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIA 57 Query: 59 HAVQKGAGLVVVNTDMVASIG------------------SLSIPVFGVDDVLGALNKLAV 100 +G V++ + I S ++ V + L AL KLA Sbjct: 58 DLYARGVRNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAE 117 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R R + +I ITGS GKT KE L LS + SYN+ IGVPL++ +M Sbjct: 118 QHRNRFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQS 177 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + IFE G+S GE+R L ++++P I ++T I AH NF ++E K +F+ + Sbjct: 178 ELAIFEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLFKNCD-- 235 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + N DD F AKS + +S K + K ++ + + + + Sbjct: 236 -VVIYNGDDEFVSNCVAKSMLSAREIAWSR-KDMERPLYISKVEKQDDCTVISYRYLDMD 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 I +N L L L + + ++ P R + Sbjct: 294 NTFTLPFIDDASIENSLNCLAACLYLMLPAERITERMAKLEPI---AMRLEVKEGKNNCL 350 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LI++SYN++ S+ A+ L + S RR +L D+ E G+ + + + +A++++ Sbjct: 351 LINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLILSDILETGQNTPTLYRQVAQLVNSRG 410 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFY 458 I + G + + +I + L IQ L + +++++K + GF Sbjct: 411 IERIIGVGNEISSCAARF--NIEKTFYPDTAALIRTIQRGELRLENEIILIKGARKFGFD 468 Query: 459 RLINLLLEE 467 L +L ++ Sbjct: 469 SLTEVLEKK 477 >gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Lai str. 56601] gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Lai str. 56601] Length = 466 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 123/443 (27%), Positives = 201/443 (45%), Gaps = 31/443 (6%) Query: 36 SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVL 92 F + G DGH+FI A+ KGA +V + V + L Sbjct: 39 EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPVKNTL 97 Query: 93 GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVP 150 AL KLA R R +IA+TGS GKTTTKE+L L +++++ +YNN IG+P Sbjct: 98 TALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLP 157 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 TL ++ + ELGM+H GEI L+ + +P A+ITTI AH+ + IA AK Sbjct: 158 FTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAK 217 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 EI EGL+K G +F + ++LK K+ G K + + + Q + E Sbjct: 218 GEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSDKIFSILQKKSSGFLLE-- 275 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 K+ ++ + G + +N+ + + + + + + + F Sbjct: 276 -------YKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSFKSSNK----- 323 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 R L G +++I+++YNAN SM +++ V Q++ AVLGDM E+GE S+ FH Sbjct: 324 RLDLQNGKYSVINDTYNANYESMISSLEVADQLA--DGKEFYAVLGDMKELGEYSKEFHK 381 Query: 391 DLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLV-- 442 L + S N+ ++ G +++ + H+ T +GL I L Sbjct: 382 KLGKKCSEFQNLKGLYTFGTDSFWIQEEFVKRTSSPRFSEHFPGTQEGLSELIHKFLQTI 441 Query: 443 -DGDVVVVKSSNSCGFYRLINLL 464 +G +V+ K+S R + L Sbjct: 442 PEGSIVLAKASRGIQLERFVEAL 464 >gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax sp. JS42] gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax sp. JS42] Length = 482 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 120/471 (25%), Positives = 191/471 (40%), Gaps = 20/471 (4%) Query: 2 NPLWTFHD---LLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 +P+ T H LL+A I G + + D+R++A + F A+KG +D H F+ Sbjct: 8 SPMMTLHQAFDLLRARIPGVRLVGEGATPLARAHTDTRTLAAGDLFVALKGERFDAHQFL 67 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A A + +P V D L AL LA R + +IA+TGS Sbjct: 68 SQAR----RAGAAAAIAHAGLADAGLPGIEVPDTLAALGALAAGWRAQRDLPLIAVTGSN 123 Query: 118 GKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 GKTT +M+ A G++NN +GVPLTL R+ + + ELGM+H GEI Sbjct: 124 GKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGEI 183 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L + RP +A++ HL +E +A + L GT D+F L Sbjct: 184 ANLADIARPTVALVNNAQREHLEFMHTVEAVARENGSVLSALPADGTAVFPAADAFTPLW 243 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + G + +FG+ + + + + + + + G H N Sbjct: 244 RE---LAGTRHCLTFGE-TAGEVRCAAAQWGGGAWQVRIDTPNGAFDTRLAIAGRHNVTN 299 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + + L+ F P GR + T++D+SYNANP S+ A Sbjct: 300 ALAATACALAAGVPLASIAQGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHA 359 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 AI VL+ + G R+ VLGDM E+G+ FH + I ++ G Sbjct: 360 AIEVLAALP----GPRLLVLGDMGEVGDQGPQFHAEAGAHARARGIEQLFALGDLSAHAV 415 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + + + M L + +L V+VK S +++ L Sbjct: 416 QACGTAAR--HFKDMATLQAAVGQALPTVGSVLVKGSRFMKMEQVVQALQA 464 >gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella marshii DSM 16973] gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella marshii DSM 16973] Length = 433 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 112/435 (25%), Positives = 183/435 (42%), Gaps = 17/435 (3%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ D+R FFA+ G ++G+ F A++ G VV+ A+ V Sbjct: 16 ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEPQYANADDD--RYLMVP 73 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL LA R + A II ITG+ GKTTTKE++ L+ G++NNHIGV Sbjct: 74 DSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQGNFNNHIGV 133 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P TL R+ + + G+ E+G +H GEI L + P +IT + AHL F E + Sbjct: 134 PKTLLRLKPEHEVGVIEMGANHPGEIACLAGIAEPDCGMITNVGKAHLEGFGSFEGVIKT 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ L + D+ L ++ ++ + Q Sbjct: 194 KGELYDFLRTKLKSTVFIDNDNPYLCDISQGLNLVRYGCRPAENLLIEGQAASSTPLL-- 251 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + +V IG + N+L + + + ALS + P G Sbjct: 252 QFRWRHSTDAWHDVGTQLIGSYNLTNLLAAACVGLYFSIAPEQIDHALSHYTP----GNN 307 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 LI ++YNANP SM AA++ ++ + +A+LGDM E+G +S + H Sbjct: 308 RSQLAVTAHNRLIIDAYNANPTSMNAALTNFEEMDVPKK---MAILGDMKELGTVSHAEH 364 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L + L I VWL G + + ++ + ++ +G +++ Sbjct: 365 QKLVDGLRHSTIHTVWLVGEEFGQTETDFRK------FRNVEEVKQALEKERPEGYHILI 418 Query: 450 KSSNSCGFYRLINLL 464 K S+ Y L +L Sbjct: 419 KGSHGTRLYTLPEVL 433 >gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 461 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 176/461 (38%), Gaps = 14/461 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + G +G + +++DSR + + F A++G DGH F+ A+ +G Sbjct: 6 MTLGQAADLVGGILVGPDMELP-RRVALDSREVLSGDLFVALRGNRTDGHAFVGQALSRG 64 Query: 65 AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A ++V + I V D AL ++A ++ ITGSVGKTTT Sbjct: 65 ARCLLVEISKLEEIRPGLGGASCLAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTT 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 +E++ L K + SYN IG+ T+ M D + E G S GEI L Sbjct: 125 REVILSLLGRRFKVHGSPKSYNTLIGLSATVMGMDRGCDNLVLEYGTSSFGEISKLVSYF 184 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P VIT +APAHL ++ + AK EI E + + +LL Sbjct: 185 PPDEMVITEVAPAHLERLRDVQGVLRAKLEILESQRGRFLSYNADN----DLLWGAVTGG 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G+ + D ++ + + + + L + Sbjct: 241 GLTVQRMGVGVRRGDVRISDRRIVWGDDGPRLNFNLHHGDRQLEVSSGLWPLHGAYPLAL 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ V + + R R ++ L+DESYNANP SM AI + Sbjct: 301 SWVMALRFGVEDLFPEVAYGFKPVKGRGRAIRSREGGWLMDESYNANPTSMFGAIDSTLE 360 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ G R AVLG M EMGE S +H + + L+ V L G D LP Sbjct: 361 LARGGSMRPQAVLGGMLEMGEDSSLWHRRIVDRLN--GFQRVILVGDRWP--SDRLPDW- 415 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V + + + L +G + +VK S + Sbjct: 416 -VVPVGSFEDALE-VPMDLGEGTLTLVKGSRGYKLDLYVEA 454 >gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] Length = 825 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 108/471 (22%), Positives = 185/471 (39%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + + DSRS+ + FFA+K DGH +I Sbjct: 1 MT--YTIEKVTTLIGARRFGAS-DAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIP 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + V D L AL +LA R I+ ITGS Sbjct: 58 ELYRRGVRNFVVTEVPADYATEYAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L L SYN+ +GVPL++ + GIFE G+S GE+ Sbjct: 118 GKTMVKEWLNQLLCDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEAGISQPGEMLA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NF E K +F T+ N DD Sbjct: 178 LRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILFH---DAKTVVYNGDDPIVNGCVN 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + ++ K K A F ++ ++ + + +G I N Sbjct: 235 ELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSF 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L VD + + P R Q TLI++SYN++ S+ A+ Sbjct: 295 ACAAVALTLGVGVDVLDERMQQLEPI---AMRLEVKQGQHGCTLINDSYNSDINSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + G + + ++ + + G + + Sbjct: 352 DFMNRRPDHQGRRHTLILSDIYQSGMTTDELYQEVGMLCQQRGVEKFIGVGKDLQSHAYC 411 Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ E+++ L + L +V+++K + GF +L LL+++ Sbjct: 412 IGVKAK-YFFESVEELIDSDVFKQLH-DEVILIKGARRFGFDQLTELLVQK 460 >gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium matruchotii ATCC 14266] gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium matruchotii ATCC 14266] Length = 496 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 113/498 (22%), Positives = 180/498 (36%), Gaps = 39/498 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF--- 56 M L ++ + G + G + DSR +A + F A+ G DGHD+ Sbjct: 1 MITL-RLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAA 59 Query: 57 --------ILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 +L A G V+ V+ A+ V V L + KLA Sbjct: 60 AMDRGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAV---LEGMAKLARYV 116 Query: 103 RLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 + T+I ITGS GKT+TK+++ L T A GS+NN IG P T R Sbjct: 117 VDKLSARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTEA 176 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + + E+ +G I L + PHI V+ + AH+ F + IA K E+ E L Sbjct: 177 TKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARTKGELVEALPA 236 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----- 274 G LN DD + + ++ A T++SF + S Sbjct: 237 DGIAVLNADDDYVAAMADRTSA----TVWSFSTLHKPVRVAATDIRLDNLSRPTFTLIGT 292 Query: 275 --QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 Q + +V G H N L D T + L + Sbjct: 293 DSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAHRMDVHH 352 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 A N + N L+ R IAVLG M E+G+ + + H++L Sbjct: 353 AGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDATADHVEL 412 Query: 393 AEVLSLYNISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ I V + G + A + + + L GDV++V Sbjct: 413 MRTVAEQGIDLVVVVGTDENARAMINAAAAMGLRAIPTADTTQAATEVLKVLGRGDVILV 472 Query: 450 KSSNSCGFYRLINLLLEE 467 K+SN+ +++ ++ + Sbjct: 473 KASNAYRLWQVAEAVVAQ 490 >gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Planctomyces brasiliensis DSM 5305] gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Planctomyces brasiliensis DSM 5305] Length = 473 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 144/471 (30%), Positives = 227/471 (48%), Gaps = 24/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P T + Q + G S G P V G SIDSR++ P + F+A+ G + DGH F+ A Sbjct: 11 MMP-TTLQKITQQLCGRSAG-SPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQFVTAA 68 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA VV+ + G P V+DV AL + + R +A +I +TGSVGKT Sbjct: 69 FEKGAAAAVVSQPVTREAG----PCIQVEDVAAALAEASFEHRNSLEALMIGLTGSVGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TT++ML LS A ++NN +GVPL+L + ++ + E+G S GEI L Sbjct: 125 TTRQMLHAVLSKAYTGTASRENFNNRLGVPLSLLGISEADEYAVIEMGASAQGEIGALGE 184 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LV+P IA++T IAPAHL F IE + S K+E+F+ L ++G L ++ + H Sbjct: 185 LVQPEIALLTQIAPAHLDGFGSIEGVISGKSELFDNLPESGLAVLPEHLYVMPAIRRRIH 244 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + G+ +AD L + S Q E + G H A + + + Sbjct: 245 S----RVLTVGQGPSADICLNNIRLDSGQLKFECDGD----SFRMNAPGKHFASSAGLCV 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I L L F P EGR C G +T++D++YNA+P S + ++ Sbjct: 297 AIARELGLTTAQIQAGLENFSPVEGRC----CRRMIGDWTVLDDTYNASPIS--MSAGLV 350 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + G RIA+LGDM +GE ++ +H L + ++ I ++ + G + A R Sbjct: 351 SLLQTSVSGPRIAILGDMLCLGEHAKYYHRKLGQEVARTGIDYLLVYGEFADHVAAAATR 410 Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ L + L G +++K+S + RLI +L E Sbjct: 411 GGMSASRIAAFPKLEQLQELLPLWLSPGAGMLLKASRNMQLERLIPVLEAE 461 >gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria lactamica ATCC 23970] gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria lactamica ATCC 23970] Length = 452 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + AS+ VDD L AL LA A R + ITGSVGKT Sbjct: 58 LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A+ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L T + D ++ + VV G H N Sbjct: 234 TATLNLNTHTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLGLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108] gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108] Length = 831 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 111/479 (23%), Positives = 204/479 (42%), Gaps = 24/479 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ ++ ++++ I IG V ++ + DSRS++ + FFA+ DG +I Sbjct: 1 MS--YSIENIVEIIGAQRIGNV-SATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSKATI 110 +G VV+ + + + V + L AL KLA R + + + Sbjct: 58 DLYARGVRNFVVSKESMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPV 117 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I ITGS GKT KE L LS+ + SYN+ IGVPL++ +M IFE G+S Sbjct: 118 IGITGSNGKTIVKEWLHQLLSAERVIVRSPRSYNSQIGVPLSVWQMNEQSGLAIFEAGIS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 GE+R L ++++P I ++T I AH NF ++E K +F+ + + N DD Sbjct: 178 EPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDE 234 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F AKS + +S K + K ++ + + + + I Sbjct: 235 FISNCVAKSMLSAREIAWSR-KDMERPLYIGKVEKKDDCTVISYRYLDMDNTFTLPFIDD 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +N L L L + + + P R + LI++SYN++ Sbjct: 294 ASVENSLNCLAACLYLMLPAEKITERMGRLEPV---AMRLEVKEGKNGCVLINDSYNSDL 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 S+ A++ L + S +R +L D+ E G+ + + + +A++++ I + G Sbjct: 351 GSLDIALNFLYRRSLSNGLKRTLILSDILETGQNTSTLYRQVAQLVNSRKIERIIGVGSE 410 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLINLLLEE 467 + +I + D L + L + +++++K + GF L +L ++ Sbjct: 411 ISTCAARF--NIENAFYPNTDALMNAVVKGKLRLENEIILIKGARKFGFDALTEVLEKK 467 >gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulomonas flavigena DSM 20109] gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulomonas flavigena DSM 20109] Length = 476 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 136/469 (28%), Positives = 205/469 (43%), Gaps = 26/469 (5%) Query: 16 GHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G P V G + DSR + P F A+ G H DGHDF + + Sbjct: 15 GTLSATDPGHVVTGPVVTDSREVEPGGLFVALPGEHVDGHDFAAG------AVAAGAALV 68 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLR----------SKATIIAITGSVGKTTTKE 124 +A+ +P V DV AL LA A R S +I +TGSVGKTTTK+ Sbjct: 69 LAARALPGLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKD 128 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L + T A + S+NN IG+PLT+ R F + E+G S G + +LT + P Sbjct: 129 VLAQLCGAAGPTVAPVRSFNNEIGLPLTVLRADEQTRFLVLEMGASGPGHLTYLTDIAPP 188 Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+ + AHL F GI+ +A AK+EI GL G LN DD + + Sbjct: 189 DVAVVLVVGQAHLGGFGGGIDAVARAKSEIVAGLLPDGVAVLNGDDPRVRAMADVAPGRA 248 Query: 244 I-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + D +L + + + V + +V +G H N L Sbjct: 249 VLFGAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHHVHNALAAAAA 308 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D L+ T++D+SYNANP SM+AA+ L+ Sbjct: 309 SLQVGLTLDEVAAGLTAADALSPHRMH--VVDRADGVTVVDDSYNANPDSMRAALKALAV 366 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 I+ E R +AVLG+M E+G+ ++ H + ++ NI + G A++D Sbjct: 367 IAG-RERRSVAVLGEMLELGDEHRTAHDAIGRLVVRLNIGLTVVVGEGARAIRDGANHEG 425 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V + +D F+ L GDVV+VKSS G +RL + L+E Sbjct: 426 SWGDEVVLVDDVDTAAAFLAQELRAGDVVLVKSSYGAGLWRLGDELVER 474 >gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha14] gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha14] gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase; D-alanyl-D-alanine-adding enzyme) [Neisseria meningitidis 8013] Length = 452 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SM+AA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMRAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442] gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442] Length = 463 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 12 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 68 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGS GKT Sbjct: 69 LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 124 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 125 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 185 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 244 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 245 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SM+AA Sbjct: 301 AAAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMRAA 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 358 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 414 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 463 >gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium psychrophilum JIP02/86] gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase [Flavobacterium psychrophilum JIP02/86] Length = 817 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 110/470 (23%), Positives = 203/470 (43%), Gaps = 22/470 (4%) Query: 1 MNPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFI 57 M+PL + H+++ + + GI + + ISIDSRS+ FFA+ GP+ D H +I Sbjct: 1 MDPLTISLHNIIPILDANFQGIDENIYYDTISIDSRSLQNNENTLFFALVGPNNDAHIYI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + KG VV + + V + L AL A R II ITGS Sbjct: 61 GDLISKGVKNFVVT--YIPKRLTGKANFLIVKNTLVALQIFARYYRNLFHFPIIGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ +GVPL++ + + + GIFE G+S E+ Sbjct: 119 GKTIVKEWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINENHNLGIFEAGISTKDEMEN 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I ++T I AH F+ I E K ++F +E Sbjct: 179 LQKIIQPTIGILTNIGTAHDEGFADISEKIKEKLKLFTAVEVLILNKNKTI--------- 229 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ +++ + + + K ++ + + + QGK ++ I +N + Sbjct: 230 ETFINKEINTFTWSTNDQSADVFFQKKTLNDHALLNITNQGKYFKIKIPFIDEASLENSM 289 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + ++ L D+DT +S P R + TLID+SY+++ S+K A+ Sbjct: 290 HCILVMLYLKYDLDTIKHRISQLFPV---EMRLKVKNGINNCTLIDDSYSSDFQSLKIAL 346 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L H + +L D+ + G ++ ++ +++++ I+ V G + K+ Sbjct: 347 DFLENQKQHLKK--TLILSDIYQSGLENEDLYVRVSQLIISNKINRVICIGGVISKYKNK 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++V + + + + +++K S F +++ LL E+ Sbjct: 405 F---LNVISYLSTNDFIEDFDNLDFTNETILIKGSRHFEFEKIVTLLEEK 451 >gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] Length = 824 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 187/463 (40%), Gaps = 12/463 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62 +T + I H G ++ + DSRS+A FFA++ DGH ++ + Sbjct: 3 YTSEQITALIDAHRFGANSDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYR 62 Query: 63 KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +G VV+ + + + V D L AL LA R R ++ ITGS GKT Sbjct: 63 RGVRDFVVSALPDDYASRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTI 122 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KE L LS SYN+ +GVPL++ + GIFE G+S GE+ L + Sbjct: 123 VKEWLYQLLSPQLVVTRSPRSYNSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALRPI 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 ++P I V+T AH NF+ +EE + K +F + + + DD ++ Sbjct: 183 IQPRIGVMTNTGQAHQENFTSLEEKCAEKLSLF---KDADVLIYDADDPVVAEGVRQASF 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + +S K D ++ + +S + I + ++ + Sbjct: 240 AGDQLAWSRTK----DEGPLVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIH 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +++ A E R LI++SYN++ S+ A+ + Sbjct: 296 CLAVCLYLHVDAAVIAQRMARLEPVAMRLEVKQGVRGCILINDSYNSDVNSLDIALDFMQ 355 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + R+ +L D+ + G + + +AE+++ + + G + A++D Sbjct: 356 RRPDRVGMRKTLILSDISQSGMPREQLYAQVAEMVNRRRVDRLIGVGPDLSAMQDLFK-- 413 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I + T L + + ++V++K + + F L LL Sbjct: 414 IDAVFYPTTKALLESGKVGRLRNEMVLLKGARAYNFEALTELL 456 >gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium kansasii ATCC 12478] Length = 524 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 130/519 (25%), Positives = 199/519 (38%), Gaps = 68/519 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + G I PQ V G + DSR+I P F A+ G H DGHD Sbjct: 1 MIDL-TVAQIADIVGGTLADISPQDAAQRRVTGTVEFDSRAIGPGGLFLALPGAHVDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107 + V + + +P V +L + A+A L Sbjct: 60 YAA-------SAAAAGAVAVLAARPVGVPAIVVT-PERSLAEGALAGVLEHDADGSGAAV 111 Query: 108 -------------------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 TII ITGS GKT+TK+++ L + A GS+NN +G Sbjct: 112 LAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVLQPLGVVVAPPGSFNNELG 171 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T+ R D D+ I E+ H G I L + P I V+ + AHL F E IA Sbjct: 172 HPWTVLRAGRDTDYLILEMSARHPGNIAALAQIATPAIGVVLNVGTAHLGEFGSREAIAR 231 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K+E+ + + ++G + LN DD + + A ++ A + Sbjct: 232 TKSELPQAVPQSGVVILNADDPAVAAMAEVTAARVVRVSRGSTGDVWAGPVSLDELARPQ 291 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + Q EV G H N L + A +D AL P Sbjct: 292 FTVHAGATQ---AEVRLGVYGDHQVSNALCAAAVALECGATLDQVATALGGAGPV--SRH 346 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---------RRIAVLGDMC 379 R + T+ID++YNANP SM A + L+ I+ G G R AVLG+M Sbjct: 347 RMQVTTRADGVTVIDDAYNANPDSMGAGLQALAWIARGGSGAGSDLAAKRRSWAVLGEMA 406 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----------PRSIHVHY- 426 E+G + + H + + ++S + + G V A+ + Sbjct: 407 ELGADAIAEHDRVGRLAVRLDVSRLVVVGTGRSVSAMHHGAVLEGAWGSWGAGADRGTVN 466 Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 D +++ + GDV+++K+SNS G L + L+ Sbjct: 467 VADADAALELLRAEVQPGDVILIKASNSAGLGALADALV 505 >gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni S44] gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni S44] Length = 475 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 115/473 (24%), Positives = 188/473 (39%), Gaps = 23/473 (4%) Query: 4 LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + T L+ IQ H + Q + + D+R++ + F A+KG +D HDF+ Sbjct: 1 MMTLAKALELIQTHIPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A V + + + V D L AL LA A R + +IA+TGS GK Sbjct: 61 AQ----AAGAVAAIASHGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116 Query: 120 TTTKEML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 TT +M+ + A G++NN IG+PL L RM + E+GM+H GE Sbjct: 117 TTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGMNHPGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + +P +A++ H +E +A + L K G D + L Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGDEYTPL 236 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293 S FG++ + + +W V H G H Sbjct: 237 WTELSAGRPSLM---FGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIAGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L + + LS F P GR + + T++D++YNANP S+ Sbjct: 294 RNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNANPDSV 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI+VL+++ ++ VLGDM E+G+ FH + + I+H + G Sbjct: 354 AAAIAVLAELPA----PQLLVLGDMGEVGDNGPQFHAEAGALAQQAGIAHFFALGDQSAF 409 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + ++M L + + L V+VK S +++ + Sbjct: 410 AASAFGSGAR--HFDSMSALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSIEA 460 >gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni CNB-2] gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas testosteroni CNB-2] Length = 475 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 116/473 (24%), Positives = 188/473 (39%), Gaps = 23/473 (4%) Query: 4 LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + T L+ IQ H + Q + + D+R++ + F A+KG +D HDF+ Sbjct: 1 MMTLAKALELIQTHIPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A V + + + V D L AL LA A R + +IA+TGS GK Sbjct: 61 AQ----AAGAVAAIASHGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116 Query: 120 TTTKEML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 TT +M+ + A G++NN IG+PL L RM + E+GM+H GE Sbjct: 117 TTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGMNHPGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + +P +A++ H +E +A + L K G D + L Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGDEYTPL 236 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293 S FG++ + + +W V H G H Sbjct: 237 WTELSAGRPSLM---FGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIAGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L + + LS F P GR + + T++D+SYNANP S+ Sbjct: 294 RNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNANPDSV 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI+VL+++ ++ VLGDM E+G+ FH + + I+H + G Sbjct: 354 AAAIAVLAELPA----PQLLVLGDMGEVGDDGPQFHAEAGALAQQAGIAHFFALGDQSAF 409 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + ++M L + + L V+VK S +++ + Sbjct: 410 AASAFGSGAR--HFDSMSALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSIEA 460 >gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 452 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + AS+ VDD L AL LA A R + ITGSVGKT Sbjct: 58 LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A+ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I+VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 INVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida 3523] Length = 453 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 110/472 (23%), Positives = 210/472 (44%), Gaps = 26/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYSGEDVSIQTVAINSNEVRQDCLFVAII-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA V+V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAVLVSKKQ-----DLDIPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L S K + N +GVP+T+ P +VDF + E G + GEI+ Sbjct: 111 TVKEMIVTLLGSKKVHFTQGNFNNY-LGVPMTILETPHNVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + +HL N ++ + K E+ + L K G +N DD K Sbjct: 170 IIQPNIAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIVNLDDERIPAYADKLD 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I S +++AD + ++ E +++++ K IG H N ++ + Sbjct: 230 CKKITCSMS---NQDADILILDYQVTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + ++ ++ +GR + TL+D++YNA+ +++AAI L Sbjct: 287 ASVVAAGFEPNSFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G+R+ + M E+G+ ++++H + + L+ N+ ++L G +++ Sbjct: 344 AEF----DGKRVIAITSMRELGDEAENYHRKMGQWLNKANLDKIFLFGEKNLINFALEEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEE 467 ++ ++ Y + L + L + + +K + S ++ + + Sbjct: 400 KNSNIKYYDDKQQLNDDLLKVLTEYKSQNTKLTIKGARSFKMEEVVAFVKQR 451 >gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] Length = 822 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 101/466 (21%), Positives = 186/466 (39%), Gaps = 14/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M+ +T + + H G V I DSRS+ FFA++ DGH +I Sbjct: 1 MS--YTLERIASLVGAHLWG-DEAVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++G VV+ V L AL +LA R ++ ITGS G Sbjct: 58 ELYRRGVRSFVVSRLPEDMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L LS ++ SYN+ IGVPL++ + + G+FE G+S GE+ L Sbjct: 118 KTVVKEWLYQLLSPERRVTRSPRSYNSQIGVPLSVWNLNEKSEVGLFEAGISEPGEMEAL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +++P I V T + AH NF+ E+ K ++F+ + + + Sbjct: 178 QSVIQPTIGVFTCLGDAHQENFTSYEQKCMEKLKLFKDAKVLVYDMDDACVAGCV----N 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + + ++ + ++ ++ + +GK I N + Sbjct: 234 RSAFKGEYFAWSRQQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVS 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L +T ++V P R + TLI++SYN++ S+ A+ Sbjct: 294 CLAVCLHLGMSPETIAARMAVLEPV---AMRLEVKEGRSGCTLINDSYNSDYNSLDIALD 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +++ +R VL D+ + G + + +A ++++ + G + A++ Sbjct: 351 FMNRRPDCAGRKRTLVLSDIEQAGGAPEDLYGRVARLVAMRGVEKFIGVGPCLSAVRGLF 410 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + D L + +V+++K + S F L L Sbjct: 411 --GMEACFYRSTDELLGSGVLDTLHDEVILIKGARSFRFDVLTEHL 454 >gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 510 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 235/489 (48%), Gaps = 36/489 (7%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LW D+ A G G V+G + DSR + + F A+KG + DGH F+ A Sbjct: 18 TALWRAADIAAATGGKLGGG--DFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAF 75 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGK 119 KGA +V + P V D + L A ARL A +I +TGS GK Sbjct: 76 LKGAAGALVEQAVA-------HPHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGK 128 Query: 120 TTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KE L AL + + + SYNNH+GVPL+LARMP FG+FE+GM+H GE+ Sbjct: 129 TGVKEALFAALDRSSRGRAHRSVKSYNNHVGVPLSLARMPARTRFGVFEMGMNHAGELSA 188 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT LVRPH+A++TTIAPAH+ +FSG IA AKAEIFEGLE G + D LL A Sbjct: 189 LTRLVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEPGGVAIVPADSPHCALLVA 248 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS------WMEVQLQGKSMEVVHHGIGYH 291 + +FG +++AD +L + + + G H Sbjct: 249 -HAQRHAGLVITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAH 307 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----NQGFFTLIDESYN 347 A N L + V+ + D+ A AL+ GRG R+ A G LIDESYN Sbjct: 308 WAANSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYN 367 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANPASM + ++ + RR+AVLG M E+GE ++H LAE ++ I V L Sbjct: 368 ANPASM---SATIAALGATPARRRVAVLGAMRELGEGEAAYHAALAEPIAAAGIDRVVLV 424 Query: 408 GFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G + AL DAL ++ VH + + + GD ++VK SNS G Sbjct: 425 GAEMAALADALGKNAQGALAAGFDMVHVATAAEAAECLAAAGPQGGDAILVKGSNSVGLG 484 Query: 459 RLINLLLEE 467 L+ L+ Sbjct: 485 ALVKALIAR 493 >gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia farcinica IFM 10152] gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia farcinica IFM 10152] Length = 499 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 119/506 (23%), Positives = 178/506 (35%), Gaps = 55/506 (10%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T ++ + G P+ V G DSR I + F A+ G DGHD+ Sbjct: 1 MIEM-TLREIADVVGGTLHDAPDPEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAA 59 Query: 59 HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-------- 99 AV G VVV + V AL A Sbjct: 60 AAVAAGAAAVLAARPVGVPAVVVEPRRCS-----------VPATSMALAHDADGSGAAVL 108 Query: 100 -----------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 T++ +TGS GKT+TK++L L+ + A GS+NN +G Sbjct: 109 AALAALARASVERLSAAGGLTVVGVTGSSGKTSTKDLLAAVLAPLGPVVAPPGSFNNELG 168 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T R D F + E+ +G I L + P I V+ + AHL F E IA Sbjct: 169 HPWTALRATADTRFLVLEMSARGVGHIAALAEVAPPRIGVVLNVGTAHLGEFGSREAIAR 228 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+ E L G LN DD A + G S +AD++ + + + Sbjct: 229 AKGELVEALPADGLAILNADDPNVAA----MAARTAARVVRVGLSGDADYRASEVRLDEQ 284 Query: 269 -QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ + S E+ G H N L + S AD+ T ALS R Sbjct: 285 ARATFTLHTPAGSTEIRLGVHGEHQVGNALAAAAVASECGADLATVAAALSGARAVSERR 344 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 R + + N + V + R AVLG+M E+GE S Sbjct: 345 MDVRTTADGVTVVNDSYNANPDSVRAALKALVTMSRAGERPRRSWAVLGEMAELGEESVL 404 Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441 H + + ++ + + G A+ +D + + Sbjct: 405 EHDGIGRLAVRLDVDRLVVVGTGRPSRAMHQGAVMEGSWGEESVLVPDIDAAVALLDREV 464 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467 GDVV+VK+S S G + + L Sbjct: 465 EPGDVVLVKASKSVGLWEVAEHLTRR 490 >gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl- D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl- D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 430 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 110/435 (25%), Positives = 198/435 (45%), Gaps = 20/435 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ +SR FFA++G +DG+D+I+ A+ GA V + + + + V Sbjct: 16 ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDRNDLPENE----RIIKVG 71 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 +VL L LA R A IIAITG+ GKTTTKE++ LSS KT + NN+IGV Sbjct: 72 NVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLSSKYKTLYTQENLNNYIGV 131 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 PLTL R+ + F + E+G SH+ EIR L + P +IT + AHL F ++ + A Sbjct: 132 PLTLLRLNSEHQFAVIEMGASHVNEIRMLCQIAEPDYGIITNVGKAHLEGFGSLDGVVKA 191 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K E+++ + G + D L+ + + Y ++ + Sbjct: 192 KTELYDFIRDKGGVVFANLD---NLILKEWYNSFSVIYYGTTSKAFVYGRMIGFDPTL-- 246 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 +E ++V H +G + +N+L ++ + + + ++ + P R + Sbjct: 247 -VLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRINVVIANYIPINNRSQN 305 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + N LI ++YNANP SM+ A+ ++ + + +LG+M E+G S+ H Sbjct: 306 CKTKKNN----LIVDAYNANPDSMRVALDNFYKLRISPK---MVILGEMGELGSYSKEEH 358 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L + V+L G + + L + +++ + V+G +++ Sbjct: 359 QKVLNSLWGSKVDKVFLIGRNFE---ECLLPCSGWKLFRQTEDCLEYLRMTSVEGYHILI 415 Query: 450 KSSNSCGFYRLINLL 464 K S + ++ + L Sbjct: 416 KGSRNNQLEKIFHYL 430 >gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax citrulli AAC00-1] gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidovorax citrulli AAC00-1] Length = 501 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 110/479 (22%), Positives = 193/479 (40%), Gaps = 23/479 (4%) Query: 1 MN--PLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54 M+ P+ T +Q + P + + D+R++ + F A++G +D + Sbjct: 1 MSGAPMLTLQQAHALVQARIPRARLVGEPGTPLLRVHTDTRTLQAGDLFVALRGERFDAN 60 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 DF+ A G + + +P V D L AL LA R R ++ +T Sbjct: 61 DFLAQARA---GGAAAALAHPGRLDAAGLPGIEVPDTLAALGALAAGWRARLDLPLVGVT 117 Query: 115 GSVGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 GS GKTT +M+ +A G++NN IGVPL L R+ + + ELGM+H Sbjct: 118 GSNGKTTVTQMIASVLRAWKGDAAFATQGNFNNDIGVPLMLLRLRDAHEAAVIELGMNHP 177 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + RP +A++ HL ++ +A + L G D++ Sbjct: 178 GEIAVLAGIARPTVALVNNAQREHLEFMHTVQAVAEENGSVISALPPDGVAVFPAADTYA 237 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L + + T AD + + + +++ + + G H Sbjct: 238 PLWRGLAGTRRCLTFCDRA-GVAADVRCTDARWETGAWNVQIDTPQGAFDGTLRIAGRHN 296 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYN 347 N L A +D + L+ F P +GR + + + T +D++YN Sbjct: 297 VANALAATACALAAGAPLDAIARGLAAFEPVKGRSRAFVATVAQPGGAPRRITAVDDTYN 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ANP SM+AAI VL+++ G ++ V+GDM E+G+ FH + I ++ Sbjct: 357 ANPDSMRAAIDVLAELP----GPQLLVMGDMGEVGDQGPQFHAEAGGHARERGIGRLFAL 412 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 G + A + + M L ++ + + V+VK S +++ L Sbjct: 413 GALGIHAVQAF--GPQARHFDDMASLLAAVRKAAPESGSVLVKGSRFMKMEQVVQALEA 469 >gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 452 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 193/471 (40%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IG + +SI+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLATQAGLEYIG--EDVSIQTVSINSNEVNQDALFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ ++IP ++ + L LA R K II++TGS GKT Sbjct: 56 IANGAKALLVSKKQ-----DINIPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K + N +GVP+T+ P DVDF + E G S GEI+ Sbjct: 111 TVKEMIVTLLGGKKVHFTQGNFNNY-LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAE 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P++A+IT + +HL N ++ + K E+ + L K G +N DD K Sbjct: 170 IIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGVCIVNLDDERIPAYADKLD 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I S + + + + + + + ++ Sbjct: 230 CKKITCSMSNQDADIIILDYQVTPELYDVKIRIFNKEYSYQLPNIGKHNLSNSMLAIASV 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + D + + + + K TL+D++YNA+ +++AAI+ L Sbjct: 290 VAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKL------TLVDDTYNASAGAVQAAIADL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G+++ + M E+G+ +++H + + L+ + +++L G +++ Sbjct: 344 AEF----DGKKVIAITSMRELGDEGENYHRKMGQWLNKAGLDNIFLFGEKNLIKFALEEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLE 466 +V Y + L + L + VK + S ++ + E Sbjct: 400 EGSNVKYYDDKKQLNNDLLKVLDGYKSQNTKLTVKGARSFKMEEVVKFVKE 450 >gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis H44/76] gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis CU385] gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis H44/76] Length = 439 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 127/454 (27%), Positives = 199/454 (43%), Gaps = 25/454 (5%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ Sbjct: 3 SESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 VDD L AL LA A R + ITGS GKTT KEML L A Sbjct: 63 ----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI++GL G + +D+ + K + L +T + D Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + VV G H N + ++ + L Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR TLID++YNANP SMKAAI VL+++ RI V+GD Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347 Query: 378 MCEMG----ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433 M E+G + + + H ++ I + G + + + + D L Sbjct: 348 MGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPL 405 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L + V+VK S ++ L ++ Sbjct: 406 IQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 439 >gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria polysaccharea ATCC 43768] gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria polysaccharea ATCC 43768] Length = 452 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR I + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL +A A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR + TLID++YNANP SMKAA Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKVGIKGATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] Length = 896 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 111/471 (23%), Positives = 191/471 (40%), Gaps = 16/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I H G + + DSRS+ A + FFA+K DG FI Sbjct: 73 MT--YTIERVATLIGAHRYGNR-DANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIG 129 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + V + LGAL +LA R ++ ITGS Sbjct: 130 DLYRRGVFNFVVEHLPDNYDTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSN 189 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ IGVPL++ M G+FE G+S GE+ Sbjct: 190 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLMNELTQIGVFEAGISMPGEMAS 249 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V+T I AH NF+ +EE S K ++ + + L A Sbjct: 250 LRSIIQPTIGVLTGIGTAHQENFASMEEKCSEKLKL-------FHDSEAVIYNADDDLIA 302 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + G S+ K ++ + + + I + + +++ Sbjct: 303 RCMEQSGYKGRRMGWSQKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPFIDSASVV 362 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ +++ +A E R Q TLI++SYN++ S+ A+ Sbjct: 363 NSITCMAVSLYLGLSADDLDRRMQRLEPVAMRLEVKTGQHGCTLINDSYNSDVKSLDIAL 422 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + GE + + +++ ++ + G + A D Sbjct: 423 DFMNRRPDHKGRRHTLILSDIYQSGESPRELYREVSTLVQGRGVEKFIGIGPEISAQSDE 482 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + E++D + SL +V+++K S S GF L LL ++ Sbjct: 483 IKVREKF-FFESVDSFISSEVFRSLR-DEVILLKGSRSFGFDLLTELLAQK 531 >gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Herpetosiphon aurantiacus ATCC 23779] gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Herpetosiphon aurantiacus ATCC 23779] Length = 489 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 119/484 (24%), Positives = 210/484 (43%), Gaps = 48/484 (9%) Query: 4 LWTFHDLLQAIQG------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 + T ++ ++ + + IDSR + F A++G DGHDFI Sbjct: 1 MLTLQTVVDGVKIASEPRLQLPAALANLPIRSACIDSREASVDGLFVALQGERVDGHDFI 60 Query: 58 ---------LHAVQKGAGL-----------VVVNTD---MVASIGSLSIPVFGVDDVLGA 94 VQ+G V+++ D + + + + VD L A Sbjct: 61 AAAAARGVRAALVQRGRLADPSQLGLDRPFVLLDPDQGQIANEAPANAFFLISVDQTLTA 120 Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 +++LA R + ++ ITGSVGKT+TKE+L L+ +T+ SYN+ +PL + Sbjct: 121 MHRLATRYRQQQDLVVVGITGSVGKTSTKEVLAAMLAPTMRTHKSPRSYNSENTLPLVVL 180 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + + + E+G+ + G++ LT + +P I ++T + +HL IE +A AK+E+ Sbjct: 181 GIEPEHQIAVLEMGIYNKGDLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKSELV 240 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME 273 + L G LNYDD ++ + A ++++G AD + + + Sbjct: 241 QALPADGWAILNYDDQRVRAMQQVTKAQ----VFTYGLDPEADLWADNIESRGLDGIGFD 296 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 +G+ + IG H L + +L D+ I+ L Sbjct: 297 AHYRGEQWHIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLRSSAQLRLLSYPA--- 353 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 G TLID++YNA+P S AA+++L+++ +GRRIAV GDM E+G +S H + Sbjct: 354 --VGGATLIDDTYNASPVSCIAALNLLAEL----QGRRIAVFGDMAELGPHDESGHRLVG 407 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + +++ G + + + VH L +QS+L D V+V Sbjct: 408 VRAADV-VDQLYVVGEKARWIGEEAIEVGLPAEQVHVLPDKAALIAALQSTLQANDYVLV 466 Query: 450 KSSN 453 K S Sbjct: 467 KGSR 470 >gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684] gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684] Length = 447 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 115/456 (25%), Positives = 190/456 (41%), Gaps = 31/456 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L + G +G P V G SIDSR++ P + + I DGH +I A+ GA Sbjct: 4 STSELAAHLGGELVG--PDVGVEGASIDSRTLRPGQLYVPIVAER-DGHAYIPAALDAGA 60 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + + + V D A+ +L V AR R I +TGSVGKTTTK++ Sbjct: 61 PAYLTEQE------PVGGTAIRVGDTAAAMLRLGVLARGRVGG-AIGVTGSVGKTTTKDL 113 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L++ +T A S+NN +G+PLTL P + + E+G G+I L + RP Sbjct: 114 LAGCLAARFRTAASERSFNNELGLPLTLFNAPEAARWAVLEMGARRAGDIERLAAVARPE 173 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + ++T++ AHL ++ +A K E+ L +G LN+DD + + S + + Sbjct: 174 VGIVTSVDMAHLEYMGDLDGVARVKGELVAALPASGLAVLNFDDPRVRGMASLSASPVLG 233 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 AD ++ + EV G H N L + Sbjct: 234 YSVGGDADVRADDVTLDQDL---RARFRLSSPWGQAEVRLGVHGLHQVPNALAAATVALW 290 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++T AL+ R + + L+ + YNA P S +A + L+ + Sbjct: 291 CGVPIETVAAALAQSKGSPWRMEVHHMPDG---PLLVVDCYNAMPTSTEAGLRSLAALPG 347 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 + +A+LG M E+G+ S+S H +A V I V G+ +A Sbjct: 348 ERK---LALLGLMAELGDHSESEHRRIARVAEELGIEAV---GYETPLYGEA-------- 393 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 Y + ++ +L GD +VK S ++ Sbjct: 394 YVTGAEEAVALLR-TLGTGDAALVKGSRVTRLEDVV 428 >gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] Length = 448 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 113/437 (25%), Positives = 196/437 (44%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G++IDS+ + P + FFA+ G DGH F+ A Q GA VV+ D S + + Sbjct: 25 KISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLEL 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D AL + + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 83 IVVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLLSSVYRVYASPKSYNS 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + VPL+L D DF I E+G+S ++ L +V P +AVIT I H+ NF + Sbjct: 143 QLTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNF-PDQG 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + E + L + L D ++ +S + + + D + + Sbjct: 202 VQGIAEEKSQILCNSRVQLLPKDSPWYPHFIKQSMSAEKFSFAFY------DETADFYYK 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + + ++ N+L++L + +L VD I + Sbjct: 256 VIRKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPM 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ Q +I+++YNA P +M AA+ + P G+ I +LG M E+G S Sbjct: 316 RFEQSIRNGIQ----IINDAYNACPEAMLAALDAIPH--PSEGGKVILILGHMAELGNYS 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 + H +A L + ++ G L ++ + V + + G+ ++ + G Sbjct: 370 EEGHTVVANKA-LSKANIIFFIGEKWLPIRHLVKHGACEVSFYPSAQGIEEMLKKVVQQG 428 Query: 445 DVVVVKSSNSCGFYRLI 461 D+V++K S S L+ Sbjct: 429 DIVLLKGSRSLALESLL 445 >gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] Length = 426 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 178/461 (38%), Gaps = 39/461 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + + + ++ I G+ D+R F A+ G ++D HD+I A Q GA Sbjct: 5 TTNTIAKVLK---IDYSVNVKFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++ N + +P+ V+D AL+ +A K +IAITGS GKTTTK M Sbjct: 62 VAIIANKSV-----DSQLPILVVNDTQTALSTIASWHLQNIKPIVIAITGSNGKTTTKNM 116 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LS T G+ NNH+GVP+TL + + + E+G +HLGEI L +V P Sbjct: 117 LANILSLQAPTLKTQGNLNNHLGVPMTLLTLEKQHQYAVIEMGANHLGEISHLRKIVNPD 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA++T AH+ F G + + AK EI+ K + Sbjct: 177 IAIVTNTLDAHIGTFGGFDNLVKAKGEIYSKNSKNIINTQSIFTGDV------------- 223 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 SF N + + + + N+ L S Sbjct: 224 ---SFTPHGNTKVSGNNGDIFASNIVNNKFDLNIHQQKISITLNLIGIHNIDNAL-AASA 279 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + I + ++ F +ID++YNANP S A+ L S Sbjct: 280 CVYPLGIDINLIKQGLEATKAEPGRLEIIHTKQFRIIDDTYNANPYSTIIALKTLQNFS- 338 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G +I VLG M E+G S+ FH + ++ + G L Sbjct: 339 ---GEKIIVLGTMEELGNYSKMFHFKIGQLAKKSA-DTFYSYGKIALHHCS--------I 386 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + E L I ++ +++K S +L++LL + Sbjct: 387 HFEKKQPLANHILTN-HTNATILIKGSRMAKLNKLVDLLKK 426 >gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. Spyr1] gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium sp. Spyr1] Length = 501 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 120/496 (24%), Positives = 197/496 (39%), Gaps = 35/496 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + + + + G + V G + DSR++ F A+ G DGHDF Sbjct: 1 MSLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAAT 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLA------------------ 99 AV GA V+ + + G L A Sbjct: 61 AVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARLAAAV 120 Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 A + TI+ ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R Sbjct: 121 AAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLRATES 180 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 D+ + E+ H G I L + P I + + AHL F E IA+ K+E+ + + + Sbjct: 181 TDYLVLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSREAIAATKSELPQAVPQ 240 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +G + LN DD + K+ A ++ S + + G+ Sbjct: 241 SGVVILNADDPVVAAMADKTAARVVRVGRSADARTLDVRADGVTLDPLARPAFTLHAGGE 300 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + V G H N L+ + A + AL+ P R + + Sbjct: 301 QVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAAAGPV--SRHRMQVSTRSDGV 358 Query: 340 TLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+I+++YNANP SM A + L+ +S R AVLG+M E+GE + + H + + Sbjct: 359 TVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMAELGEDTITEHDRIGRLAV 418 Query: 398 LYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++S + + G + A+ D ++ L GDVV+VK+ Sbjct: 419 RLDVSRLVVVGSGRPMSAMLHGAVMEGSWGSEATPVADADAALALLRDELRPGDVVLVKA 478 Query: 452 SNSCGFYRLINLLLEE 467 SNS G L + L+ E Sbjct: 479 SNSAGLGALADALVSE 494 >gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] Length = 452 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 206/471 (43%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP +++ L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----GLDIPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S +++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + TL+D++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 + +G+R+ + M E+G+ ++++H + + L N+ V+L G +++ A Sbjct: 344 DEF----DGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + + VK + S ++ + E Sbjct: 400 PAQNAKYYESKDELNNDLLKVLNEYKSQNTKLTVKGARSFKMEEVVKFVKE 450 >gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 428 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 118/435 (27%), Positives = 189/435 (43%), Gaps = 25/435 (5%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---------GSLSIPVFGVDDVLG 93 F A+ G +DGHDF+ A+Q G+ VV+ D + G ++ V D + Sbjct: 2 FLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTVL 61 Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 A +LA R ++A+TGS GKTTT+E++ L+ + A G+ NN +GVPLTL Sbjct: 62 AYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNENNDLGVPLTL 121 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R+ + E+GM LGEI L+ +P +AVIT I AH+ E IA AK EI Sbjct: 122 LRLTDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRLGSREAIAQAKCEI 181 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 L+ G + + D + A + I G A+ + + S + Sbjct: 182 TTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAEADWVGQEDPAAGSVV- 240 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + V G H A+N+++ L + L + Sbjct: 241 ----VDGVAVPLPLEGRHHARNLMLALAVARHLGVGP------ERLQQLHVALPGGRSRR 290 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 L G L+DE+YNA+P ++ A++ + ++ GRR AVLG M E+G+ S + H +A Sbjct: 291 LAVGGIRLLDETYNASPEAVLASLEL---LATQAGGRRYAVLGTMLELGDKSLALHRRVA 347 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + + A + + + + +Q L GD V++K+ Sbjct: 348 RRAIELDLDGLLIVDGGAEGEAMAAEAAGMSRLALVPSPEAAAAVLQPWLAPGDTVLLKA 407 Query: 452 SNSCGFYRLINLLLE 466 S S RLI LL + Sbjct: 408 SRSVALERLIPLLQQ 422 >gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185] gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185] Length = 830 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 104/474 (21%), Positives = 194/474 (40%), Gaps = 20/474 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T + + I +G + ++ + DSRS++ + FFA+ G +I Sbjct: 1 MS--YTIESIAECIGARRVGEC-EATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 +G VV + + ++ V + L AL KLA R K II Sbjct: 58 DLYDRGVRNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIG 117 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS ++ SYN+ IGVPL++ ++ + + GIFE G+S + Sbjct: 118 ITGSNGKTIVKEWLHQLLSPDRRIVRSPRSYNSQIGVPLSVWQLNEEAELGIFEAGISEM 177 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+ L +++P I ++T I AH NF ++E K +F+ + + Sbjct: 178 GEMNALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-------IYNGD 230 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L + A + T S+ + + +++ V I + Sbjct: 231 NELISNCVAKSMLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIPFID 290 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 ++ L ++ + A + E R + LI++SYN++ AS Sbjct: 291 DASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLAS 350 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + A+ L + S +R +L D+ E G+ + + + +A+++ I + G + Sbjct: 351 LDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVRSRGIDKLIGVGAEIS 410 Query: 413 ALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++ ++ + L + SL +V+++K S F L L Sbjct: 411 SCTARFDDALERYFFPNTEALLASNLLKSLHS-EVILIKGSRVFNFDLLSEELE 463 >gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M01-240149] Length = 436 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 127/451 (28%), Positives = 197/451 (43%), Gaps = 22/451 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + ++ Sbjct: 3 SESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 VDD L AL LA R + ITGSVGKTT KEML L A Sbjct: 63 ----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI++GL G + +D+ + K + L +T + D Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + VV G H N + ++ + L Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR TLID++YNANP SMKAAI VL+++ RI V+GD Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347 Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE + + H ++ I + G + + + + D L Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L + V+VK S ++ L ++ Sbjct: 406 LRHDLPERATVLVKGSRFMQMEEVVEALEDK 436 >gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bradyrhizobium sp. ORS278] gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase, D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp. ORS278] Length = 458 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 191/466 (40%), Gaps = 43/466 (9%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP---------- 49 M LWT + +A+ G P+ ++ ++ DSR++ P F A+ G Sbjct: 1 MTKALWTVAEAARALG--LAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFA 58 Query: 50 -HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSK 107 DG +F +A Q GA ++V I +++P V D L L LA AAR R Sbjct: 59 SSRDGWEFAANAEQAGAVAMIV----PHRIEGVTVPQLVVTDTLIDGLWALARAARSRFH 114 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I +TGS GKT+TKE + + A S+NN GVPLTL + E+ Sbjct: 115 GPVIGLTGSAGKTSTKEFIAAYPGAS----ASPSSFNNFWGVPLTLCNADPSASVWVVEM 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 GM+ GEI LT L +P +A++ + P HL +E I K I GL G + L Sbjct: 171 GMNQKGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRQEKVSIARGLPSGGILVLPA 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D L A + + + R + H Sbjct: 231 D------LAAPEWSGKTIRFGGDAEVRELSHTARGESWDVTADIAGCSVNFALTPGAPHR 284 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + +A + + + + E G LID+S+N Sbjct: 285 LHNALAALASVAAAGLDPALLAPELGEVGIMTGRGVEQ---------TVGDIVLIDDSFN 335 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 NPASM AA+ L GRRIAV+GDM E+G+ + ++H + L+ I V+ Sbjct: 336 GNPASMAAALDGLQARPVR--GRRIAVIGDMLELGDEAPAYHAKMVGHLA--GIDGVFCV 391 Query: 408 GFHVLALKDALPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSS 452 G + L +ALP+ + + E L + + L GDVVVVK S Sbjct: 392 GPLMRHLFEALPQGRRLGWHEDPVTLDPKQVAALLAPGDVVVVKGS 437 >gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EuI1c] gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp. EuI1c] Length = 493 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 201/467 (43%), Gaps = 21/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A G G V +DSR + P F A+ G DGHDF Sbjct: 1 MIPL-TLAEVAAATGGRLDGGADAATLVTAAVVDSRLVEPGALFVALPGARVDGHDFAA- 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 G V V + +S+P V D GAL LA R +KAT++AITGS GK Sbjct: 59 ------GAVAAGARAVLAARPVSVPAVLVADPAGALMALAAHVRTLTKATVLAITGSSGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L S+ T A GS+NN IG+PLTL R+ D ++ E+G +G I L Sbjct: 113 TTTKDLLADLLGSLGPTLAPPGSFNNEIGLPLTLLRLEPDTEYVALEMGARGIGHIAALC 172 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + RP + V+ + AH+ ++ + T + LN DD ++ + Sbjct: 173 QVARPQVGVVINVGSAHVGEYADGRAGIAQAKG-ELAEAATDVVVLNADDPLVAAMRPR- 230 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + +FG + +AD + + + + ++ + V +G H N L Sbjct: 231 --AAGRRVVTFGVAADADVRAERIALDAAGRASFDLVTDAERHRVALALVGEHQVGNALA 288 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + A AL+ P R +++++YNANP SM+AA+ Sbjct: 289 AAAAALAVGMTPTAAAAALAAARP--RSRWRMEVTTAPSGLVVVNDAYNANPESMRAALR 346 Query: 359 VLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLAL 414 L + G R AVLG M E+G +++ H +L + + + G Sbjct: 347 ALVGLGADGGPDRRRTWAVLGPMGELGTAAEAEHAELGRFAARLGVDRTVVIGEAARPLA 406 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRL 460 + A V + +D + ++ + DVV+VK+S + G R+ Sbjct: 407 QAAAGAGARVDWVADVDAAAELLATAALGDADVVLVKASRAAGLERV 453 >gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5] gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16] gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5] gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16] Length = 848 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 106/474 (22%), Positives = 198/474 (41%), Gaps = 24/474 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 +T +++ I +G P ++ + DSRS+ + FFAI +G +I + Sbjct: 20 YTIESIVEKIGARRLGNKP-AAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78 Query: 63 KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 +G VV +++ + + V + L AL KLA R + ++ Sbjct: 79 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 138 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE G+S + Sbjct: 139 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 198 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+R L ++++P I ++T I AH NF ++E K +F + + N D+ Sbjct: 199 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 255 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 KS + +S + + + ++ + + + + I Sbjct: 256 SNCVGKSMLTAREIAWSM-RDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 314 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L L L D + ++ P R + LI++SYN++ AS Sbjct: 315 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 371 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + A+ L + S +R +L D+ E G+ + + + +A+++ I + G + Sbjct: 372 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 431 Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + I ++ L + L +++++K S + GF + L Sbjct: 432 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEELE 482 >gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida Fx1] Length = 453 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 109/472 (23%), Positives = 205/472 (43%), Gaps = 26/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S +++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRVTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + TL+D++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ V+L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467 + + Y E+ D L + L + VK + S ++ + + Sbjct: 400 PTQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451 >gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] Length = 453 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 109/472 (23%), Positives = 206/472 (43%), Gaps = 26/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA++T + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMVTNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S +++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ V+L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467 + + Y E+ D L + L + VK + S ++ + + Sbjct: 400 PTQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451 >gi|53712185|ref|YP_098177.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis YCH46] gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46] Length = 848 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 106/474 (22%), Positives = 198/474 (41%), Gaps = 24/474 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 +T +++ I +G P ++ + DSRS+ + FFAI +G +I + Sbjct: 20 YTIESIVEKIGARRLGNKP-AAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78 Query: 63 KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 +G VV +++ + + V + L AL KLA R + ++ Sbjct: 79 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 138 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE G+S + Sbjct: 139 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 198 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+R L ++++P I ++T I AH NF ++E K +F + + N D+ Sbjct: 199 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 255 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 KS + +S + + + ++ + + + + I Sbjct: 256 SNCVGKSMLTAREIAWSM-RDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 314 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L L L D + ++ P R + LI++SYN++ AS Sbjct: 315 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 371 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + A+ L + S +R +L D+ E G+ + + + +A+++ I + G + Sbjct: 372 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 431 Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + I ++ L + L +++++K S + GF + L Sbjct: 432 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEELE 482 >gi|60680368|ref|YP_210512.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis NCTC 9343] gi|60491802|emb|CAH06560.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis NCTC 9343] gi|301161901|emb|CBW21445.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis 638R] Length = 840 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 106/474 (22%), Positives = 198/474 (41%), Gaps = 24/474 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 +T +++ I +G P ++ + DSRS+ + FFAI +G +I + Sbjct: 12 YTIESIVEKIGARRLGNKP-AAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70 Query: 63 KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 +G VV +++ + + V + L AL KLA R + ++ Sbjct: 71 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 130 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE G+S + Sbjct: 131 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 190 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+R L ++++P I ++T I AH NF ++E K +F + + N D+ Sbjct: 191 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 KS + +S + + + ++ + + + + I Sbjct: 248 SNCVGKSMLTAREIAWSM-RDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 306 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L L L D + ++ P R + LI++SYN++ AS Sbjct: 307 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 363 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + A+ L + S +R +L D+ E G+ + + + +A+++ I + G + Sbjct: 364 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 423 Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + I ++ L + L +++++K S + GF + L Sbjct: 424 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEELE 474 >gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101] Length = 456 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 180/447 (40%), Gaps = 18/447 (4%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 + G+ P V I DSR + E F + G +DGH F+ A G VV Sbjct: 15 GAQAAGVDPAAPVGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGR 74 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + + VDD L A +LA+ R + A ++A+TGS GKTTT+E++ AL + Sbjct: 75 AGDVPP-GLLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLG 133 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 A G+ NN IGVPLTL + + + E+GM LGEI L+ +P +AVIT I Sbjct: 134 PVMASSGNENNDIGVPLTLLKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAVITNIGT 193 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AH+ E IA+AK EI L+ G + + D E + ++ + G Sbjct: 194 AHIGRLGSREAIATAKCEITSQLKPDGLLVIPAGDPLLEQAIQAVWSGRVQRVALAG--- 250 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 D + + E L + + G H A+N+L+ + + L + Sbjct: 251 --DPGVDQADLLGELDETNDLLSVRGERIRLPLAGRHNARNLLLAVAVAQELGVGLPALA 308 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 N+ + + A+ ++ GRR AV Sbjct: 309 DLDVEVPG----------GRNRRLQLGGLRVLDETYNASPEAVLAALELLARQPGRRFAV 358 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDG 432 LG M E+GE S + H +AE + + + + A A ++ Sbjct: 359 LGSMLELGEQSVALHRQVAERAAALGLDGLVVVAGGAEAQAMAAAAQALPNLAVVAEPAE 418 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYR 459 ++ L GDV+++K+S R Sbjct: 419 AAEPLKQWLASGDVLLLKASRGVALER 445 >gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis NE061598] Length = 452 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S ++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ ++L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + VK + S ++ + E Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKE 450 >gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella termitidis ATCC 33386] gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella termitidis ATCC 33386] Length = 435 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 113/439 (25%), Positives = 193/439 (43%), Gaps = 28/439 (6%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 +N + I+S + + F AI+G G+ +I A +KGA V+ + + + Sbjct: 23 LEINNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGA-YVIYDDKTKKTPYPKA-- 75 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 F V+D + L K A R II ITGS GKTT K+++ LS+ K G+ N Sbjct: 76 -FLVNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQLLSTKYKGKKTEGNLN 134 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+P++L R DF + E+GMS GEI L + +P +IT I +HL E Sbjct: 135 NHIGLPVSLLRAENSDDFLVLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSRE 194 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + AK+EI + ++ +FLN DD F L S AD++ + Sbjct: 195 NVFKAKSEIIKHVK--AKMFLNGDDPFLGDL--------PGIKVSADGKSTADYRAKNIN 244 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + ++ + + + IG H N+L + I + Sbjct: 245 LSGDGTKFDLNEG---LTLETNLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKLTA 301 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R ++ G I+++YNA+P SM+ AI S I + + ++ +LGDM E+GE Sbjct: 302 MRFQKIE----NGNIIYINDAYNASPISMEKAILTFSDI--YNDRYKVVILGDMLELGEK 355 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 FH +L ++L + + L G + L + + ++V + + + ++ + Sbjct: 356 DAEFHEELEKILRNTKQNEILLYGSLMKNLYEKIKD-MNVFHFDEKSFIREKLRGHNSEK 414 Query: 445 DVVVVKSSNSCGFYRLINL 463 V++K S +I Sbjct: 415 LAVLLKGSRGMRLEEIIEE 433 >gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum MopnTet14] Length = 450 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 107/437 (24%), Positives = 170/437 (38%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV D S + + Sbjct: 24 KVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 F V D +L + + +I ITGSVGKTTTK LSS K +A SYN+ Sbjct: 82 FHVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKVFASPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S G ++ L ++ P I VIT I H NF Sbjct: 142 QLTLPLSILMADGDEDFLLLEMGVSEPGNMKNLLEVIEPTIGVITHIDVQHAMNFLD--- 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I E N Sbjct: 199 --KGAKGIVEEKSLLLERCGLQLLPKDSSWFPFFMKKNSTAEQFSFSMNNETSDFYYRAI 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 S+ + + VV +M + + L + + L P Sbjct: 257 HSDGVLISAPDGDIELPVVFPYSPAYMNFLVAVAL------AWLTNVPMDRLEQVSPSLI 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P SM AA+ + P G+R+ +LG M E+G+ S Sbjct: 311 LPSMRFEQQEYNGIRVINDAYNASPDSMLAALDAVPV--PPEGGKRVFILGHMAELGKYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444 H+ +A V G ++D + + + + +++ + ++S + G Sbjct: 369 NECHVAVARKAV-TKAHVVVFIGEKWFPVRDVVRDANCQIEFYGSVNEIMHVVKSLVRQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942] Length = 455 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 116/475 (24%), Positives = 185/475 (38%), Gaps = 24/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M ++ + + +G ++ DSR I P + F A++G +DGHDF+ Sbjct: 1 MATFFSPFQIQLGLGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVA 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA +V+ D + + VD+ L A ++A R R +I ITGSVG Sbjct: 61 QALADGAIAAIVDRDYQPPSDLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVG 120 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRF 177 KTTTKE++ L+ +YNN IGVP T+ ++ D + + E+GM G+I Sbjct: 121 KTTTKELIAAMLAVRGPVLKTEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAE 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P+IAVIT + AH+ + IA AK E+ L TG LN D+ L A Sbjct: 181 LARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIA 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + L + ++G Q L + G H A N L Sbjct: 238 TAQRLNLPRCRTYGLQNGD---------LQGQLIDLETLVVEGQRFRLPLPGAHNALNFL 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L I L D + R R L+DE+YNA SM AA+ Sbjct: 289 AGLAIAQELGLDWEAFR-----DLSVTLPQGRARRIELSPDIVLLDETYNAGLESMLAAL 343 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416 + G +G ++ + + + A Sbjct: 344 QAFGGYAGPTPDCSA---GHDEGIGRFQRNLPSPSWRKSGCLGLDRLLIYADPTEAAAMQ 400 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 A +I + L ++ S+ GD ++ K+S S R++ + + A+ Sbjct: 401 AGASAIATQIFTNAEDLLSELRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455 >gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum Nigg] Length = 450 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 102/437 (23%), Positives = 168/437 (38%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG--PDYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LS K +A SYN+ Sbjct: 82 LHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H NF Sbjct: 142 QLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVD--- 198 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I E + N Sbjct: 199 --KGAQGIAEEKSLLLERCGIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 SE + +E+ N ++ + + + +D +A Sbjct: 257 HSEGVL--ISAPDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSM 314 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ +I+++YNA+P +M AA+ + P G+ + +LG M E+G S Sbjct: 315 RFEQQEHNG----IRIINDAYNASPDAMLAALDAVPI--PSEGGKTVFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444 HI +A V+ G +++ + + + + ++ + ++S + G Sbjct: 369 DECHIAVARKAV-TKAHVVFFVGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] Length = 452 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 102/437 (23%), Positives = 168/437 (38%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D + + Sbjct: 26 KVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG--PDYGLQL 83 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LS K +A SYN+ Sbjct: 84 LHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPKSYNS 143 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H NF Sbjct: 144 QLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVD--- 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I E + N Sbjct: 201 --KGAQGIAEEKSLLLERCGIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI 258 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 SE + +E+ N ++ + + + +D +A Sbjct: 259 HSEGVL--ISAPDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSM 316 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R ++ +I+++YNA+P +M AA+ + P G+ + +LG M E+G S Sbjct: 317 RFEQQEHNG----IRIINDAYNASPDAMLAALDAVPI--PSEGGKTVFILGHMAELGRYS 370 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444 HI +A V+ G +++ + + + + ++ + ++S + G Sbjct: 371 DECHIAVARKAV-TKAHVVFFVGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRG 429 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 430 DVVLLKGSRSLELETLL 446 >gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 200/483 (41%), Gaps = 31/483 (6%) Query: 4 LWTFHDLLQ----AIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 ++T +D++Q I S P DSR I P + F A KG + DGH FI Sbjct: 1 MFTLNDIVQSNTDQIHIQSSTTPDPALVFRSAHHDSRLITPGDLFIARKGTNSDGHHFIP 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117 A + GA + +T A+ V DVL AL+ A A R K T+ I ITGS Sbjct: 61 AAARAGALAALCSTP--ANDVPPDFLQIIVPDVLTALHATARARTQRQKDTVRIGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK+ + LS T SYN+ +G P+TL + + + E+G +GE+ + Sbjct: 119 GKTSTKDAVAAVLSHKAPTLKTYASYNHELGYPITLLHLEPQHRYAVLEMGAQCVGELTW 178 Query: 178 LTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + + PH ++ITT+ AHL F E +A AK+E+ + L G LNYDD + Sbjct: 179 LCNSIASPHWSIITTVGAAHLEYFGTQERVAIAKSELVQVLTPDGFAILNYDDELVRAMA 238 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 AK+ A + G + A + Q G H Sbjct: 239 AKTQARILYYGTGEGATVRASNIGGDTLFGHSFTLHYHDQQQPVQ---LRLPGEHGVTIA 295 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L +D AL P GR TLID+SYNAN S+ A Sbjct: 296 LAAAATGCAAEMSLDDIASALEDLSPAPGR---CEIKPGPNNSTLIDDSYNANRQSIIAI 352 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412 S + S G+R A+LGD+ ++G +++ H L+ + ++ G Sbjct: 353 TSAMHNTSQAPNGKRWAILGDIFQLGTYARAEHSTCGSSLAGL-VDYLIAIGDQARFYVE 411 Query: 413 -ALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 A+ +P ++S ++ ++ + GD+V++K S ++ Sbjct: 412 GAIASGMPEKNAYYFSADVNNSAELEAAKRAAADLLKHEVRPGDLVLLKGSRGMRMETML 471 Query: 462 NLL 464 +L Sbjct: 472 AML 474 >gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC BAA-286] Length = 823 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 103/467 (22%), Positives = 194/467 (41%), Gaps = 17/467 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 ++ H + + + + + ++ + DSR + + FFA+ + DGH +I + Sbjct: 3 YSIHKIAKILDA-IVSDLNDADISILLTDSRQVFYPAETLFFALSTKNNDGHKYINELYE 61 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G VV+ + V + L AL ++A R + +I ITGS GKT Sbjct: 62 LGVRNFVVSQILPDWENYNDANFLVVTNTLAALQRIAAYHRNQFDIPVIGITGSNGKTVV 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L SYN+ IGVPL++ +M GIFE G+S E+ L ++ Sbjct: 122 KEWLYQILHQDFNITHSPRSYNSQIGVPLSVWQMNDHTQLGIFEAGISQPEEMSKLEAII 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I ++T I AH F +++ K E+F + N + SH Sbjct: 182 RPTIGILTNIGQAHQEGFKSMKQKCLEKLELFINCDVIICEEENELIDECMEIACLSHKR 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + KS + K ++ + + + + G + ++V ++ + L Sbjct: 242 LTWSRRGSSKSP---LYIMKIEKQEKSTTIHYSVLGMASKLVIPFSDDASIEDAIHVLAT 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + +S P R + N TLI++SYN++ S+ A+ L+Q Sbjct: 299 AFYLHMSLPDINERMSTLEPVAMRLDVRQGKNN---STLINDSYNSDINSLNIALDFLAQ 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + E +++ ++ D+ + G + + + A ++ I + G + A K+ + Sbjct: 356 RATTSEQKKVLIISDIPQSGLIPRELYYLAANLVLNKKIDLLIGIGQEISAHKEMFKDTE 415 Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466 + + T + FI S++ +++K + S F + N LLE Sbjct: 416 SL-FFNTTED---FIHSNIWHDFHDMFILLKGARSFSFESI-NKLLE 457 >gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 452 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 112/471 (23%), Positives = 210/471 (44%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L +K + G+ NN++GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGE-RKVHFTKGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S ++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ ++L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + VK + S ++ + E Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKE 450 >gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 426 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 122/440 (27%), Positives = 195/440 (44%), Gaps = 20/440 (4%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 +GI +S+ + F A+KG ++DG+ F A+ GA + +V+ V S + Sbjct: 4 SGIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFSCR----KIIY 59 Query: 88 VDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNN 145 VDD L L KLA+ R + IIAITGS GKTTTKE+ LS + + + NN Sbjct: 60 VDDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKNNLNN 119 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 HIG+PLT+ MP++ + E+G +H EI + +++P IT AHL F IE Sbjct: 120 HIGIPLTILSMPINTQISVIEIGANHEKEIDKMCSIIKPDYGYITNFGKAHLEGFKSIEG 179 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I K E++ L+K + D +L K+ I + KS L Sbjct: 180 IIRGKLELYNFLKKNKKVVFVNGDDPIQLDKSIGMKRYIFSEKEDKKSNVKIKYLWNQVG 239 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 C +S + + ++ IG + N+ + I ++ KA+ + PK Sbjct: 240 CDLKSILY----VDNTKISSSLIGNYNLYNIASAISIGKYFKISLEKIKKAVEEYIPKNH 295 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + N+ +I + YNANP SM I L+ + + +G +IA+LGDM E+G S Sbjct: 296 RSQIM----NKKNTKIIIDCYNANPTSM---IKALTFFNNNIKGNKIAILGDMLELGFYS 348 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDG 444 H + + NI+ +L G + L S + + + Sbjct: 349 NHEHEKIIFFIEKSNINTTFLIGDIFFNI--NLKTSQRIKKFINKKKFIEWFKKHFTQKM 406 Query: 445 DVVVVKSSNSCGFYRLINLL 464 D V++K S L++L+ Sbjct: 407 DYVLIKGSRKGTLESLVDLI 426 >gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 452 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 192/471 (40%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IG + +SI+S I F AI + DGHDFI A Sbjct: 1 MIK--SLKQLATQAGLEYIG--EDVSIQTVSINSNEIKQDALFVAIV-ANRDGHDFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ ++IP + + L LA R K II++TGS GKT Sbjct: 56 LSYGAKALLVSKKQ-----DINIPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEM+ L K + N +GVP+T+ P DVDF + E G S GEI+ Sbjct: 111 TVKEMIVTLLGGKKVHFTQGNFNNY-LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAE 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P++A+IT + +HL N ++ + K E+ + L K G +N DD K Sbjct: 170 IIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIVNLDDERIPAYADKLD 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I S + + + + + + + ++ Sbjct: 230 CNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIASV 289 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + D + + + + K TL+D++YNA+ +++AAI+ L Sbjct: 290 VAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKL------TLVDDTYNASAGAVQAAIADL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G+++ + M E+G+ Q++H + + L+ + +++L G +++ Sbjct: 344 AEF----DGKKVIAITSMRELGDEGQNYHRKMGQWLNKAGLDNIFLFGEKNLIKFALEEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLE 466 +V Y + L + L + VK + S ++ + E Sbjct: 400 EGSNVKYYDDKQQLNNDLLKVLDGYKSQNTKLTVKGARSFKMEEVVKFVKE 450 >gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] Length = 452 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGTLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S ++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ ++L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + VK + S ++ + E Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKE 450 >gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium animalis subsp. lactis V9] Length = 496 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 134/490 (27%), Positives = 198/490 (40%), Gaps = 38/490 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T ++QA+ G + + DSR + F AI G H DGHDF+ A Sbjct: 4 MTLAQMVQAVHGSAEHCDCDDLETVTATSVVTDSRQVVDGALFVAIAGEHVDGHDFVDAA 63 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITG 115 ++GA +V + I S I V D + AL LA A KA TII ITG Sbjct: 64 ARQGAAAALVERE----IKSAPIAQIVVPDTVAALGALAKANLEARKAIDEPFTIIGITG 119 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 SVGKTTTK++L LS+ +T A GS+NN IG+PLT ++ + + E+G +H+GEI Sbjct: 120 SVGKTTTKDLLHALLSTQGETVAPKGSFNNEIGLPLTALKVGERTRYLVAEMGANHIGEI 179 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 LT + P IAV+ + AHL F +E IA AK+EI G LN DD + Sbjct: 180 ARLTKIAPPDIAVVLKVGVAHLGEFGSVERIAQAKSEIVRGEAPNAITVLNADDERVAAM 239 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYH 291 + ++ + D + + V QG V G H Sbjct: 240 SGIAKGDVFWFGIDKAQAHDIDGYMAADDIALDDLGHPVFELVSSQGVEQRVSLGIGGRH 299 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANP 350 N L + +L ++ + L+ + FTLID+S+NANP Sbjct: 300 NVMNALAAASVAKLLGMPLERIAQVLADTRRISPHRMAVSEVERDGARFTLIDDSFNANP 359 Query: 351 ASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 SM+A I L + + AVLG M E+G + H + + + G Sbjct: 360 DSMRAGIDGLMAWRSQEDQQPYRVAVLGSMLELGSDEHNLHRTIGAYALDGGVDALICVG 419 Query: 409 --------FHVLALKDALPRSI------HVHYSET---MDGLFLFIQSSLVDGDVVVVKS 451 + D + V +T D L + + +V++K Sbjct: 420 GGDDASLNALAQDIADGGTEAKDADDMRPVRAVKTTQQADDLIRALNAE-HPDMLVLLKG 478 Query: 452 SNSCGFYRLI 461 S++ G L Sbjct: 479 SHASGLSALA 488 >gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa 9a5c] gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa 9a5c] Length = 468 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 184/469 (39%), Gaps = 26/469 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + G+ G V I D+R++ + A++G +D H F AV +GA Sbjct: 6 LSLIAHWTGGYLHG--EDVRVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+V+ + L +P V D AL +A A + + ++A+TGS GKT+ K ML Sbjct: 64 GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119 Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 A S YA G+ NN IG+PL + P D DF ++E+G LG+I +LT + Sbjct: 120 VSILEHAAAQSSTVVYANSGNRNNEIGLPLAVIAAPDDADFAVYEMGAGKLGDIGYLTDI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A++ IAPAHL + +A K EI + G + D F L + Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG AD + + + + V G H N L Sbjct: 239 PAGCAVLRFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + L + GR + LID+SYNANP S+ AI L+ Sbjct: 299 MALVAGIPLPQIAAGLGLARSVPGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + G VLGDM E+G + H ++ ++ G Sbjct: 356 TAA----GPGWLVLGDMRELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411 Query: 422 IHVHYSETMDGLFLFIQSSLV--DGDV---VVVKSSNSCGFYRLINLLL 465 HV D L + L V V+VK S +++ LL Sbjct: 412 GHV--FADHDALAAVLWDDLRHVPDGVLPRVLVKGSRGSAMDKIVGALL 458 >gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 464 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 133/475 (28%), Positives = 210/475 (44%), Gaps = 23/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ G V+G ++ DSR ++ F A+ G DGHD Sbjct: 1 MIDL-TAAEVADLTGGTL-AAPHTTRVHGPTVVDSRKVSAGALFVALVGESSDGHDHAAG 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITG 115 AV GA LV+ + ++ +P VDDV AL +A R + A+TG Sbjct: 59 AVADGAALVLASRELD------GLPCVVVDDVTRALGLVAAEHLRRLRASGPLQVAAVTG 112 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 SVGKTTTK++L LS T S+NN IG+PLT+ + + + E+G S G++ Sbjct: 113 SVGKTTTKDLLGHVLSESGPTVMPRASFNNEIGLPLTVLEAGPETRYLVLEMGASAPGDL 172 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + P ++++ + AHL F G++ +A AK+EI GL G LN DD + Sbjct: 173 TYLTGIAPPDVSIVLAVGAAHLGGFGGLDGVARAKSEIVTGLRPEGVAVLNADDHRVVAM 232 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + L + +FG ++A + + + G+ + + Sbjct: 233 RD----LAPSRVVTFGTVRDAGVRAHRVSVDRLGRVSCQVVVGERTADLSLRLVGEHHLT 288 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + ++ AL V R T+ID+SYNANP SM+A Sbjct: 289 NALAALTAAVELGVDLDTAAAL-VSSVDAASPHRMAVTERPDGVTVIDDSYNANPDSMRA 347 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 A+ L+ ++ + R +AVLG+M E+G S+ H ++ ++ NI + + G L Sbjct: 348 ALKALAVVAG-RDRRSVAVLGEMLELGPDSRDQHDEIGRLVVRLNIKLLVVVGAGASGLA 406 Query: 416 DALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 D + V E + F+ L GDVV+VKSSN G +RL + L Sbjct: 407 DGATQEGSWGEEVVEVEDVPAAERFLAEELRSGDVVLVKSSNGSGLWRLGDALTA 461 >gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis N1568] Length = 452 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + + QA+ V+ I DSR + FFA+ G +D HDF+ Sbjct: 1 MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDV 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA VVV+ + ++ VDD L AL LA A R + ITGS GKT Sbjct: 58 LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKT 113 Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEML L A G++NNHIG+PLTL ++ + + E+GM+H GE+ Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LT + +P+ A++ AH+ F G+ +IA AK+EI++GL G + +D+ + K Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + L +T + D ++ + VV G H N Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + ++ + L F +GR TLID++YNANP SMKAA Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 I VL+++ RI V+GDM E+GE + + H ++ I + G + + Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D L ++ L + V+VK S ++ L ++ Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452 >gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis G2136] Length = 436 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 126/451 (27%), Positives = 197/451 (43%), Gaps = 22/451 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + ++ Sbjct: 3 SESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 VDD L AL LA A R + ITGS GKTT KEML L A Sbjct: 63 ----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI++GL G + +D+ + K + L +T + D Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + VV G H N + ++ + L Sbjct: 235 VHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR TLID++YNANP SMKAA+ VL+++ RI V+GD Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAVDVLARMPA----PRIFVMGD 347 Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE + + H ++ I + G + + + + D L Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L + V+VK S ++ L ++ Sbjct: 406 LRHDLPERATVLVKGSRFMEMEEVVEALEDK 436 >gi|255007708|ref|ZP_05279834.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis 3_1_12] Length = 831 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 106/478 (22%), Positives = 198/478 (41%), Gaps = 26/478 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M+ +T +++ +G P ++ + DSRS+ + FFAI +G +I Sbjct: 1 MS--YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIP 57 Query: 59 HAVQKGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108 ++G VV +++ + + V + L AL KL+ R + Sbjct: 58 DLYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQI 117 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 +I ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE G Sbjct: 118 PVIGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAG 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +GE+R L ++++P I ++T I AH NF ++E K +F + + N D Sbjct: 178 ISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGD 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + KS + +S K + + ++ + + + + I Sbjct: 235 NEMISNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFI 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 +N L L L D + ++ P R + LI++SYN+ Sbjct: 294 DDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNS 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + AS+ A+ L + S +R +L D+ E G+ + + + +A+++ I + G Sbjct: 351 DLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVG 410 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + I ++ L + L +++++K S + F + L Sbjct: 411 AEISSCASKF--DIEKYFFPDTKALLASDVIKKLK-NEIILIKGSRNFSFDLVSEELE 465 >gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis DSM 2588] gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis DSM 2588] Length = 438 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 114/433 (26%), Positives = 201/433 (46%), Gaps = 22/433 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + D+R + + FFA+KGP+++G+ + A++KGA VV+ + + + Sbjct: 27 SVQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVDEEAYYTQPDKMM---LT 83 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +D L L +LA+ R +AITG+ GKTTTKE+++ L+S KT A G+ NNHIG Sbjct: 84 NDALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVSTVLASAFKTTATAGNLNNHIG 143 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPLT+ R+P D + + E+G +H EI + P +IT I AHL F E + Sbjct: 144 VPLTILRIPADAEMAVIEMGANHEHEIEAYCKVALPTHGIITNIGKAHLEGFGSPEGVRR 203 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AK E+++ L ++ + + + GI+T+ ++G++ Sbjct: 204 AKGELYDFLRNNKGTVFVCNEYPYLV----DMSKGIQTVITYGEAAADYTGQPLADSALL 259 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + ++ G + N++ + + + A+S + P R + Sbjct: 260 SVKVTGHEGIGQIDSQLV--GAYNFPNIMAAVAVGLHFGVPAEKIQHAISSYVPSNNRSQ 317 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + N T+I ++YNANP+SMKAAI + I+ + + +LG M E+G+ S + Sbjct: 318 VMKQGSN----TIIMDAYNANPSSMKAAIDNFAGITAEKK---VLLLGGMMELGDDSVAE 370 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H L ++L + V L G D + + Y E +++Q ++ Sbjct: 371 HQALVDLLQRTHWHAVVLVG------GDFIKTNHPYIYQENAAAAAIWLQQQQFTDTYLL 424 Query: 449 VKSSNSCGFYRLI 461 +K S S G ++I Sbjct: 425 IKGSRSMGMEKVI 437 >gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct] Length = 487 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 111/475 (23%), Positives = 207/475 (43%), Gaps = 27/475 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F AI + DGH+FI A Sbjct: 27 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 81 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 82 IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 136 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 137 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 195 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 196 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 255 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S ++++ + + IG H N ++ + Sbjct: 256 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 312 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 313 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 369 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ ++L G +++ A Sbjct: 370 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 425 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE-FP 469 + + Y E+ D L + L + VK + S ++ + E +P Sbjct: 426 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKENLYP 480 >gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM 15606] gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM 15606] Length = 825 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 184/471 (39%), Gaps = 15/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G + I DSRS+ + FFA+K DGH +IL Sbjct: 1 MI--YTIEKVTTLIGARRFG-STDAKIGFILTDSRSLCFPEETLFFALKSGRNDGHRYIL 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV + V D L +L +LA R I+ ITGS Sbjct: 58 ELYHRGVRNFVVTEVPANYASDYPQANFLKVVDSLESLQRLAERHRDEFNIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ +GVPL++ + G+FE G+S GE+ Sbjct: 118 GKTMVKEWLNQLLSDDLFVTRSPRSYNSQVGVPLSVWLLNEHSQVGVFEAGISQPGEMLV 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P IAV+T + AH NF E K +F + N DDS Sbjct: 178 LRDIIQPTIAVLTNLGDAHQENFVSREAKCKEKLVLFH---DAKIVVYNGDDSLISDCVN 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +Y NA F ++ ++ + + + +G I N Sbjct: 235 ALEDFRGERLYWSCSDHNAPFFVKSIEKKATATTITYIYKGIESWYSLPFIDDASITNSF 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L D + + P R Q TLI++SYN++ S+ A+ Sbjct: 295 ACAAVALTLGVSKDALDERMLQLEPI---AMRLEVKQGQHGCTLINDSYNSDINSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H R +L D+ + G ++ + ++ ++ I G + + Sbjct: 352 DFMNRRPDHQGRRHTLILSDIYQSGMTTEELYKEVGKLCQQRGIEKFIGVGKELQS-HAG 410 Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 L + E ++ L + L +V+++K + GF +L LL+++ Sbjct: 411 LITIKDKFFFENVENLIESDVFKQLH-DEVILIKGARRFGFDQLTELLVQK 460 >gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. RS9917] gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. RS9917] Length = 460 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 109/477 (22%), Positives = 184/477 (38%), Gaps = 38/477 (7%) Query: 4 LWTFHDLLQAIQ---GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + T L++ G + + + DSR + F + G +DGH F Sbjct: 1 MLTLRQLIEIWGDPVGLQHPDLLDQPLGPVCTDSRQLVAGAFFVPLVGERFDGHRF---- 56 Query: 61 VQKGAGLVVVNTDMVA-----------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 +V + + V+D L A LA A R + Sbjct: 57 --------LVEAAARPAQAAVVATAWSDPVPPGLLHWRVNDTLEAYQMLARAHRRQLPCP 108 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++A+TGS GKTTT+E++ AL+ + A G+ NN +GVPLT+ + + + E+GM Sbjct: 109 VVAVTGSAGKTTTRELIRAALAPLGVVQASSGNNNNDVGVPLTVLGVGPEHGAAVIEMGM 168 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 GEI L+ P IAVIT I AH+ E IA+AK EI L G + + D Sbjct: 169 RGPGEIARLSRCAEPQIAVITNIGTAHIGRLGSREAIAAAKCEITASLAADGLVVIPAGD 228 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 E A+ A ++ + G + + + L+ + + + G Sbjct: 229 PLLEAALAQCWAGRVRRVALEGDALESVRPEAPVDRLGVVDVCAGVLRLEGLAIRLPLEG 288 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H A+N+L+ L + L + + N+ + + Sbjct: 289 RHNARNLLLALTVAQELGVPLAQ----------LQDLKVAVPGGRNRRIELAGIQVLDET 338 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + A+ ++ H GRR AVLG M E+G+ S + H +AE + + L Sbjct: 339 YNASPEAVFAALELLAHQAGRRFAVLGAMLELGDQSVALHRQVAERAVACGLDGLVLVMA 398 Query: 410 HVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A A + + +T + + + L GD +++K+S RL+ L Sbjct: 399 GAEADAMAEAAAPLPRLQRVDTPEQAVPVLAAWLQSGDTLLLKASRGVALERLLPEL 455 >gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Xylanimonas cellulosilytica DSM 15894] gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Xylanimonas cellulosilytica DSM 15894] Length = 488 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 141/489 (28%), Positives = 213/489 (43%), Gaps = 35/489 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L T ++ QA G P V G + DSR + P F AI G DG DF Sbjct: 1 MIEL-TASEVAQATGGRLT-ADPGVRVTGPVVADSRLVEPGALFAAIPGARVDGADFAAG 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAIT 114 AV GA LV+ ++ +PV VDDV AL LA R +A + +IT Sbjct: 59 AVADGAVLVLAAREID------GLPVVVVDDVAAALGDLARVVLERLRAANPAVKVFSIT 112 Query: 115 GSVGKTTTKEM-----LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 GS GKTTTK++ A T A GS+N+ IG+PLT+ R + ELG Sbjct: 113 GSAGKTTTKDLLGRLVAGEAADGGSDTIAPTGSFNSEIGLPLTVLRGTAATRKLVLELGA 172 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G+I +L +VRP IAVI + AH+ F E IA AKAE+ GL GT LN DD Sbjct: 173 DKPGDIGYLASIVRPQIAVILMVGTAHIEFFGSQEAIADAKAEVLGGLVPGGTAVLNADD 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----------K 279 L ++ ALG + +FG+ +AD + + Sbjct: 233 ERVLGLAPRATALG-HRVVTFGRVPSADVRAEDVTVDATGRASFTLRVRGRVAAAGEVAD 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + + + A ++ A + + G R Sbjct: 292 DLRLPVSLRLVGEHHVSNALAAATAAILAGTAPSVVAERLSAAEPGSPHRMAVTERPDGI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T++D++YNANP SM+AA+ ++ ++ R +AVLG+M E+GE +++ H + ++ Sbjct: 352 TVVDDAYNANPESMRAALRSVAVMAGRT-RRSVAVLGEMRELGEGARAAHDAIGRLVVRL 410 Query: 400 NISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 NI + + G + + + + +D + L GDVV+VK+SN Sbjct: 411 NIKLLVVVGDGAYHIHEGAMQEGSWGEETVFVPDLDAARAELAERLRPGDVVLVKASNGS 470 Query: 456 GFYRLINLL 464 G ++L + L Sbjct: 471 GLWQLGDEL 479 >gi|161511189|ref|NP_813012.2| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides thetaiotaomicron VPI-5482] gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14] gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14] Length = 849 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 104/493 (21%), Positives = 193/493 (39%), Gaps = 39/493 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M+ +T + + I +G + ++ + DSRS++ + FFA+ +G +I Sbjct: 1 MS--YTIESIAEYIGARRVGE-HEATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYIS 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIP-------------------------VFGVDDVLG 93 +G VV + + + V + L Sbjct: 58 ELYDRGVRNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLK 117 Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 AL KLA A R K +I ITGS GKT KE L LS + SYN+ IGVPL++ Sbjct: 118 ALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSV 177 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 ++ + + GIFE G+S +GE+ L +++P I ++T I AH NF ++E K + Sbjct: 178 WQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTL 237 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 F+ + + L + A + T S + + +++ Sbjct: 238 FKDCDVV-------IYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYISKVTKKEDHT 290 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 V I + ++ L ++ + A + E R Sbjct: 291 VIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVK 350 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + LI++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A Sbjct: 351 EGKNNCILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVA 410 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSS 452 +++ I+ + G + + + ++ D L I +L +V+++K S Sbjct: 411 QLIKSRGINKLIGVGAEISSCAARFEGTPERYFFPDTDALLRSGIFKTLHS-EVILIKGS 469 Query: 453 NSCGFYRLINLLL 465 F + L Sbjct: 470 RVFNFDLVSEELE 482 >gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] Length = 447 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 199/467 (42%), Gaps = 22/467 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + ++ + G G ++D R P F A G + DGHDF+ A Sbjct: 1 MIPL-SLEEIAVVVGGTVAGGGSVTVTAPAALDGRKAEPGGLFVAFAGEYADGHDFVDQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 + GA V+ S+P V D AL +LA RLR T++ +TGS G Sbjct: 60 ARAGAAAVLGTRP-------TSLPTVVVQDAREALQRLAKHVVDRLRPGLTVVGVTGSQG 112 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT TK+++ LSS T A GS NN +GVPLT+ R + F + E+G H+G+I L Sbjct: 113 KTGTKDLIAAVLSSAAPTVATAGSLNNELGVPLTMLRADAETRFLVLEMGARHVGDIAAL 172 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T LV P +AV+ + AHL F IA KAE+ +GL GT LN DD + Sbjct: 173 TDLVAPDVAVVLNVGRAHLGEFGSRGAIAKTKAELVQGLAPGGTAVLNADDPRVAAM--- 229 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 H L + +FG++++AD Q+ ++ + + A L Sbjct: 230 -HTLTDGPLLTFGRAEHADVQVLY--LVLDRLGRPSFTVRTADARAVVTLPLIGAHQSLN 286 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 V+ A A R G TL+++SYNANP S +AA+ Sbjct: 287 AAAAVTAGLAAGVPLEAATKALATASLSKWRMELRGLAGGATLLNDSYNANPDSTRAALD 346 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ RRIAVLG+M E+G +++ H + + + G + A Sbjct: 347 A---LAAIEAARRIAVLGEMRELGPSTETEHRAIGRYAAHR-ADIILAVGAPAHPIATAA 402 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 D +++ L GDVV+VK+S + L+ Sbjct: 403 --GPRALTLPDNDAALAWLREHLAAGDVVLVKASRGGRLDEVAAALV 447 >gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC 23134] gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC 23134] Length = 833 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 104/468 (22%), Positives = 195/468 (41%), Gaps = 12/468 (2%) Query: 4 LWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60 + ++ IQ + V + +DSR + Q +FAI G H++GH+F+ Sbjct: 1 MLVIKQIVPIIQATLVQQTQSDQAVYHLLLDSRKLYNPSQALYFAINGEHHNGHEFVAEL 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +G V+ ++ A + + + V + AL ++A A R + + +I +TGS GKT Sbjct: 61 YARGVRNFVIEENLPAHVKLPNANILKVTSAVNALQQVAAAHRNQYQIPVIGVTGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L L+ K SYN+ GVPL++ +M GIFE G+S E+ L Sbjct: 121 MVKEWLAKLLAEDFKVVKSPKSYNSQTGVPLSVWQMNKRHTMGIFEAGISAKNEMTALQK 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P I + T + AH F + + K ++FE + + + K+ Sbjct: 181 VIQPSIGIFTNLGTAHDEGFDNRTQKFAEKWKLFEHCKAVVCCAEHLQTYH--DIVTKTS 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + ++ +Q+ ++VQ QG++ + I +N+L + Sbjct: 239 FSGQPFTWGKNEQAQLRLLDKQTHLTQQQTQLKVQYQGENHFIQAPFIDEASVENILHCV 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D + ++ P R LID+SYN + A +K A+ + Sbjct: 299 ATMCLLGLSFDKIQRRIARLRPV---SMRLELKRGMRNTYLIDDSYNNDLAGLKIALDFM 355 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 S + + I VL DM + G + + +A++L I V G + + + Sbjct: 356 STQDVNLQK--IVVLSDMLQSGLPPEKLYQAIAQLLQSKAIDRVIAVGEEIKKHQASF-N 412 Query: 421 SIHVHYSETMDGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467 + V + + L V++VK + F L++ L ++ Sbjct: 413 VLDVVFFDQTKDLLESQVELARLANAVILVKGARRFRFEHLVHQLQQK 460 >gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 505 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 130/503 (25%), Positives = 200/503 (39%), Gaps = 45/503 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M P+ T L G+ + I P V G + DSR IAP F A+ G +GHDF Sbjct: 1 MIPM-TAGRLADITGGYLVNIDPDAVVPGPVEFDSRKIAPGSVFLALPGARVNGHDFAAQ 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGAL----------------------- 95 A++ GA L +++ DM + ++ IP V+ AL Sbjct: 60 AIKDGATLALLSRDM--GVPAVIIPHVEHVETNATALEYDRDGEGEAALAALSKLAHHTV 117 Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 +L +I +TGS GKT+TK+M+ L + +T A GS+NN IG P T R Sbjct: 118 TELVAHH----GLRVIGVTGSAGKTSTKDMIATILRTQGETVAPPGSFNNEIGHPYTALR 173 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214 F + E+ +G I L + P I + + AHL F E IA AK E+ Sbjct: 174 CTESTRFLVAEMSARGIGHIAHLARIAPPTIGAVLNVGTAHLGEFGSREAIAQAKGELVE 233 Query: 215 --EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE---- 268 + G LN DD + ++ A I G++ + ++ Sbjct: 234 ALPSADDGGVAILNADDRLVSGMAPRTSARVITFSVKSGEAGDDPADDHDAVIATDVVLD 293 Query: 269 --QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 Y Q + A ++ H Sbjct: 294 SSARASFTLTMPTGESAPVQLQVYGQHQVANALAAAAVGFAVGMSVDEIATALSHHTAAS 353 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELS 385 R + T+I++SYNANP SM+A I+ L+ + + + AVLG M E+G + Sbjct: 354 ANRMDVRNRRDGVTIINDSYNANPDSMRAGIAALASTVQAREDAQSWAVLGQMGELGASA 413 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442 H + E L + I+HV + G V AL + V + + +D + SS+ Sbjct: 414 TDEHYSIGEELGRHQINHVVVVGNGVNQRALAHGAKDSGVDVTHVDDVDAAVDNVWSSVR 473 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 DVV++K+S S G +R+ LL Sbjct: 474 PDDVVLIKASYSDGLWRVAEGLL 496 >gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii DSM 12563] gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii DSM 12563] Length = 451 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 205/471 (43%), Gaps = 36/471 (7%) Query: 6 TFHDLLQA---IQGHSIGIVPQGFVNG---ISIDSRSI---APQEAFFAIKGPHYDGHDF 56 + ++++ + + + ++ IS DSR F AIKG +DG+ F Sbjct: 5 SLKNIIKVSKELNSKYSKNIEELDIDKELEISTDSRDSFDSTK--LFLAIKGDKFDGNKF 62 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 L KG +++ + + VF DD + KLA R R II++TGS Sbjct: 63 ALETYNKGCRYFILSDQTI--NMPDNAKVFYTDDTILFFIKLAREYRRRFNIPIISVTGS 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTTKE+ + LS+ K G++NN IGVP T+ + + + E GM+H E+ Sbjct: 121 CGKTTTKELTHLFLSTKYKALKTEGNFNNEIGVPKTMFNLDTSYEIAVIEAGMNHKNELL 180 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 ++ + + +I + P H+++ IE IA AKAE+F ++ +N + + ++LK Sbjct: 181 RISECIEANTVIINNVEPVHIAHLGSIENIAYAKAELFNHTKENANAVINKNTNCADILK 240 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 ++ IK I K+ ++ + +G G N+ Sbjct: 241 KEAKRNNIKNII-----------EADIKEIVKKDDNSFEYKGIIFNHNLV--GDFNLYNV 287 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L L I D+ + K +N +I++ YN+NPA++ Sbjct: 288 LSALKAAEIYNIDLKKC----ADILLNYQSQKNRMQIINIKGCNIINDCYNSNPAAL--- 340 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALK 415 ++L +S E ++IAV+GDM E + S+H ++ ++ NI V G H + Sbjct: 341 KNMLKYLSQRNESKKIAVIGDMLETETENSSYHKEIGNNINELKNIDTVIAVGEHSKDIY 400 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + +Y E ++ L D +++K+S GF +I+ + E Sbjct: 401 NIV--NCEKYYFENAQSAIEKVKDFLKDNTAMLIKASLGMGFAVIIDSIKE 449 >gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4] gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4] Length = 819 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 105/463 (22%), Positives = 183/463 (39%), Gaps = 12/463 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-P-QEAFFAIKGPHYDGHDFILHAVQ 62 + + Q + + VP +N + DSRS++ P + FFAI +GH++I Q Sbjct: 1 MKLNKIAQIVGAND-SNVPSVEINWLLTDSRSLSFPVESLFFAIHTARNNGHNYIAELYQ 59 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 + VV+ V+D L AL LAVA R +I ITGS GKT Sbjct: 60 QNLRYFVVSEMHPEFEKMTDAVFLKVEDSLKALQALAVAHRNAFDIPVIGITGSNGKTVV 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + SYN+ IGVPL++ + GIFE G+S E++ L ++ Sbjct: 120 KEWLYQLLHTDYVITRSPRSYNSQIGVPLSVWALSESTQLGIFEAGISEPHEMKRLQPII 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RP I + T + AH NFSG+++ K ++F+ E L S A Sbjct: 180 RPTIGIFTNLGDAHQENFSGLKQKCEEKLQLFDQSEVLVYCS-------DNKLVEISIAQ 232 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 F +D + Q + + + I + ++ L Sbjct: 233 SAFKGVFFS-WGKSDKATVQIVQKEKTVSSTKVVLKYNAVESSVTIPFTDDASIENALQC 291 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 V+++ + E R +I++SYN++ S+ A+ L+Q Sbjct: 292 VAVMLYLGLKTAEIAKRILLLEAVAMRLEVKEGVRDCLIINDSYNSDLNSLSIALDFLNQ 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + + +L D+ + G+ S + ++ ++ N+ + G + D Sbjct: 352 QATAKKLSKTLILSDILQSGQTSDELYKTVSGLVHNKNVQRIIGIGSEISKHADIFELVD 411 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +T D L I L +++++K S + F + L Sbjct: 412 KTFFEQTEDFLKSPILRELK-NEIILLKGSRTYHFEDISEKLE 453 >gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 840 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 105/474 (22%), Positives = 196/474 (41%), Gaps = 24/474 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 +T +++ +G P ++ + DSRS+ + FFAI +G +I + Sbjct: 12 YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70 Query: 63 KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 +G VV +++ + + V + L AL KL+ R + +I Sbjct: 71 RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIG 130 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS + SYN+ IGVPL++ +M + + GIFE G+S + Sbjct: 131 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 190 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+R L ++++P I ++T I AH NF ++E K +F + + N D+ Sbjct: 191 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 KS + +S K + + ++ + + + + I Sbjct: 248 SNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFIDDAS 306 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L L L D + ++ P R + LI++SYN++ AS Sbjct: 307 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 363 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + A+ L + S +R +L D+ E G+ + + + +A+++ I + G + Sbjct: 364 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 423 Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + I ++ L + L +++++K S + F + L Sbjct: 424 SCASKF--DIEKYFFPDTKALLASDVIKKLK-NEIILIKGSRNFSFDLVSEELE 474 >gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospirillum ferrodiazotrophum] Length = 467 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 115/475 (24%), Positives = 198/475 (41%), Gaps = 19/475 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+ + +LL+ ++GH P+G + I+ DSR+I F A++G DGHD + Sbjct: 1 MSATVSALELLEGVEGHWFSSPPKGELFWINAGTDSRTILSGNVFVALRGLRTDGHDHLE 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITG 115 A +G L VV + ++IP V+D L AL K+ R+ +I++TG Sbjct: 61 QAAARGTTLAVVERGIPG----VNIPQIVVEDTLVALRKMGALVLAAHRRAGHRLISLTG 116 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 SVGKTTT+E++ L + NN IGVPLTL P + + E+G+ + G++ Sbjct: 117 SVGKTTTRELIRTGLPPGASHGSSGNE-NNEIGVPLTLLSWPPSARWCVLEVGIRNPGDM 175 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 L L+ ++T +AP HL +E + K+++ G+ + G + + E Sbjct: 176 DILAPLLSADTGLVTAVAPVHLETLGTLEGVWKEKSKLLRGVVEGGCRIVPEEIRRTEG- 234 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + + + + + + E + + + Sbjct: 235 RDPLFSDPTRRLLGVSLDRFPEADVSGELLSPEGKAVLSLRRPPLRLPLPWPSRALGWCA 294 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ++ + + A G R + L+ + YNANPASM Sbjct: 295 LMALAALAAEGV----DLASAAERISLYRGYSGRMERRSHSSGLLLLLDHYNANPASMSE 350 Query: 356 AISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A LS+ +G R AVLGDM E+GE SQ FH ++ E ++ ++ VW G + Sbjct: 351 AFEWLSRERGIRQGARAYAVLGDMLELGEGSQGFHREIGERAAMAGVAGVWYRGEQKSSF 410 Query: 415 KDALPRSIHVHY-SETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLE 466 + R + ++S G D+++VK S ++ LLE Sbjct: 411 VEGFLRGGGKEFQIRDASVFESDLKSGRGPGPEDILLVKGSRGMKLEEVVATLLE 465 >gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 495 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 122/500 (24%), Positives = 198/500 (39%), Gaps = 48/500 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R+++ + A++G DGHDF A Sbjct: 1 MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRALSNGSLYVALRGERVDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA ++V + +L +P V + AL ++A + +IA+TGS GKT Sbjct: 58 LAQGASGLLVER----LLPTLGVPQVVVQNTELALARIAAGMQRDRATRVIALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L+ YA G+ NN IG+PL + P D D I+E+G G+I Sbjct: 114 SVKALLLAILTEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + RP +A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIARPQVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPSDGVAVINADDAFGAWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + HA + + +G +AD + R+ + ++ + + +V G H Sbjct: 234 EQQLHAQPVPGRRVLRYGLQASADIRARQLRLQADGAQFTLVTPQGEAQVTLPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ P GR +R L+D+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPIIAAGLAQARPVAGRQIAHRLPGG---AVLVDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + H + ++ G A Sbjct: 351 DAAIDALAAAP----GDGWLVLGDMRELGAEGAALHAAAGRRARAAKLQRLYALGELSAA 406 Query: 414 LKDALPRSIHVHYSETM------DGLFLFIQSSLVDGD---------------------V 446 A V + L S + Sbjct: 407 AAQAFGEGGRVFATHAALATALQADLAQVAGSQTQTQESSLMHEHTGAAAQAATAHLPPT 466 Query: 447 VVVKSSNSCGFYRLINLLLE 466 ++VK S R++ LL Sbjct: 467 LLVKGSRGSAMDRIVTALLA 486 >gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha proteobacterium HIMB114] gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha proteobacterium HIMB114] Length = 443 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 130/435 (29%), Positives = 221/435 (50%), Gaps = 13/435 (2%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-GAGLVVVNTD-MVASIGSLSIPVFGVD 89 IDSR + F IKGP+ DGH + + + +++ + + S V + Sbjct: 16 IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSIYLKNLKNSNRVIFCN 75 Query: 90 DVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 L LA R + I ITGS GKT+ K++L L+ KK+Y SYNN+IG Sbjct: 76 STKDFLINLARIKRYLLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKSYKSQKSYNNNIG 135 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +P TL ++ +F I+ELGM++ GEI L+++++P++A+IT I AHL N I+ IA Sbjct: 136 LPYTLVNQNINSEFNIYELGMNNFGEIDSLSNILKPNLAIITNIGEAHLGNLGSIKNIAK 195 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 AKAEI + + K GTI LN+D FF LK S IK + SFG + A + Sbjct: 196 AKAEIIKNITKQGTIILNHDCKFFNQLKKISKKNKIKVL-SFGSTSKATVSYKVISLN-- 252 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 +E++L ++ + I +M NML+ + ++S ++ + + GRG Sbjct: 253 --EIEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFKLNIRKSKNYFNKIKNTRGRGN 310 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + +ID+SYN+NP+S+K++I+ ++S + I V+GDM E+G+ S+ Sbjct: 311 IVKFRKEI---IIIDDSYNSNPSSLKSSINQFEKLSTKKKK--ILVIGDMLELGKFSKKK 365 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 H ++ LS + + L G + + + Y E ++ + ++ L++ +++ Sbjct: 366 HGEIGNYLSKMGFNRILLVGKDSKEIYKKIKSTFWCKYFENINIFSKYFKNVLIENSIIM 425 Query: 449 VKSSNSCGFYRLINL 463 K+SN G +L+N Sbjct: 426 FKASNGVGLNKLLNK 440 >gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas testosteroni KF-1] gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas testosteroni KF-1] Length = 475 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 117/473 (24%), Positives = 191/473 (40%), Gaps = 23/473 (4%) Query: 4 LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + T L+ IQ H + Q + + D+R++ + F A+KG +D HDF+ Sbjct: 1 MMTLAKALELIQTHIPQARLVGNGQLELARVHTDTRTLQDGDLFVALKGERFDAHDFLSQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A V + + + V D L AL LA A R + +IA+TGS GK Sbjct: 61 AQ----AAGAVAAVASHGLETAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116 Query: 120 TTTKEML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 TT +M+ + + A G++NN IG+PL L RM + E+GM+H GE Sbjct: 117 TTVTQMIASVLRAHVGAQGEAALATRGNFNNSIGMPLNLLRMTGAHRIAVLEMGMNHPGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + +P +A++ H +E +A + L + G D++ L Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLGFLPRDGVAIFPAGDTYTPL 236 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293 + FG++ ++ +W V H G H Sbjct: 237 WTELAAGRS---CLMFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIAGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L + K LS F P GR + +N T++D+SYNANP S+ Sbjct: 294 RNALAAAACAHAAGVSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNANPDSV 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI+VL+++ ++ VLGDM E+G+ FH + + I+ V+ G Sbjct: 354 AAAIAVLAELPA----PQLLVLGDMGEVGDNGPQFHAEAGALARQSGIAQVFALGEQSAF 409 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 A + E+M L + + L V+VK S +++ + Sbjct: 410 AASAFGSGAR--HFESMAALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSIEA 460 >gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] Length = 378 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 120/388 (30%), Positives = 181/388 (46%), Gaps = 14/388 (3%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I +NG++IDSR+I F KG + DGH F+ A++ GA Sbjct: 5 TLEQIKHWIPCEIDEQYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G + P+ V+D L AL LA A +IA+TGS GKTTTK+M Sbjct: 65 GASFSEK-GTELNEDIEGPIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L++ K G+YNN IG+PLT+ + D + I E+GMS EI L+ + P Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAEPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAVIT I +H+ + E IA AK+EI GL++ GT + D+ + + L Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFIYDGDEPLLKSHLEQ---LNKA 240 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + S G + +E + + +G H +N + + I Sbjct: 241 RLISVGLGNSNTLVCHVDDIETEGIAFTINDK---ESFTLPILGTHNMKNATIAIAIGHE 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L +T ++ + G R T+I+++YNA+P SMKAAI LS + Sbjct: 298 LGLSYETIKDNINH---VKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTLSSM-- 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA 393 EGR+I +L D+ E+GE SQS H ++ Sbjct: 353 --EGRKILILADVLELGENSQSMHEEVG 378 >gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M6190] Length = 436 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 128/451 (28%), Positives = 199/451 (44%), Gaps = 22/451 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR I + FFA+ G +D HDF+ + GA VVV+ + A++ Sbjct: 3 SESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 VDD L AL LA A R + ITGS GKTT KEML L A Sbjct: 63 ----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P+ A++ AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI++GL G + +D+ + K + L +T + D Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + VV G H N + ++ + L Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR TLID++YNANP SMKAAI VL+++ RI V+GD Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347 Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE + + H ++ I + G + + + + D L Sbjct: 348 MGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L + V+VK S ++ L ++ Sbjct: 406 LRHDLPERATVLVKGSRFMQMEEVVEALEDK 436 >gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A] gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A] Length = 849 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 106/472 (22%), Positives = 185/472 (39%), Gaps = 16/472 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M+ ++ + + G +G V+ + DSRS+ + FFA++ DGH++I Sbjct: 24 MS--YSIEKIASLLGVEIYGGR-EGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYIS 80 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV V AL +LA R I+ +TGS Sbjct: 81 ELYARGVRFFVVEELPCEWEKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSN 140 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS K+ SYN+ IGVPL++ + GIFE G+S GE+ Sbjct: 141 GKTVVKEWLYQLLSFSKRVTRSPRSYNSQIGVPLSVWLLNEQTQVGIFEAGISKKGEMEV 200 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L ++++P I V+T++ AH NF +EE K +F + YDD Sbjct: 201 LRNIIKPTIGVLTSLGDAHQENFVSMEEKCREKLRLF---TDVDVLVYPYDDKLIRSCVD 257 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 G +S + + F K + + Q K I + + Sbjct: 258 TLSFKGKGLGWSVKDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYTIPFIDDASIYDSI 317 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + L + + + P R Q TLI++SYN++ S+ A+ Sbjct: 318 TCLALCLYLGVKKEVLKARMPLLEPV---AMRLEVKEGQRGCTLINDSYNSDINSLDIAL 374 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H +R VL D+ + E ++ + +A + + G ++ + A Sbjct: 375 DFMNRRPDHKGRKRTLVLSDILQSAEDDEALYRRVASLAEKRGVEKFIGIGETLICQRKA 434 Query: 418 LPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + T+ G + +V+++K + GF +L +L+ + Sbjct: 435 FNNIKEKCFFTTVGGFLSSDAFRQM--HDEVILLKGARCFGFEQLTEMLVNK 484 >gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] Length = 823 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 16/470 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58 M + + + +G I ++ I+IDSR ++ + F ++ G G DFI Sbjct: 1 MLRALSIDQIAEITRGELIQNDHIQKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIP 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + G +V+ L VDD AL ++A R + +++ITGS Sbjct: 61 ALIDLGVRNFIVHKGNSLKRELLAKANFVLVDDTRKALQEIARYQRSYFEKPVVSITGSN 120 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS + SYN+ +GVPL++ + I E G+S GE+ Sbjct: 121 GKTIVKEWLGQVLSQAYQVAKSPKSYNSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAA 180 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P++ + T I AH FS E K +F+G + + D + Sbjct: 181 LERIIQPNLGIFTNIGSAHKEGFSSQESKILEKLSLFKGSD---FLVYCKDQELPASIIE 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + +S AD+ Q + ++ +M +N+ Sbjct: 238 QEFSADKLIAWS--DKAGADYTRSIKIQDVGAKIIFIKSDLSTMTFHVPFSDPASLENIT 295 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L L + + L+ P + R LID++YN + A +K A+ Sbjct: 296 HVLVGAMTLGLKPELIQQGLNHLKPVDMRLT---LKPGVNDSLLIDDTYNNDLAGLKVAL 352 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ P I +L D+ + G + + ++AE++ +++ + G H+ L+ Sbjct: 353 DFLNLQRPKKRK--ILILSDLLQQGT-AAQLYSEVAEMVKSHHLDQIIGVGQHIFQLESF 409 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 P+ + L + D++++ + GF R++N L + Sbjct: 410 FPK--QFIGYSDTEKLLDELNPEEFSNDLILITGARPFGFERVVNKLQQR 457 >gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 465 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 185/469 (39%), Gaps = 26/469 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + G+ G V I D+R++ + A++G +D H F AV +GA Sbjct: 3 LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 60 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+V+ + L +P V D AL +A A + + ++A+TGS GKT+ K ML Sbjct: 61 GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 116 Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 A S YA G+ NN IG+PL + P + DF ++E+G LG+I +LT + Sbjct: 117 VSILEHAAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDI 176 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A++ IAPAHL + +A K EI + G + D F L + Sbjct: 177 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG AD + + + + V G H N L Sbjct: 236 PAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 295 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + L + GR + LID+SYNANP S+ AI L+ Sbjct: 296 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 352 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 G VLGDM E+G + H ++ ++ G Sbjct: 353 ----AASGPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 408 Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465 HV D L + L V G V V+VK S +++ LL Sbjct: 409 GHV--FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 455 >gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 123/431 (28%), Positives = 190/431 (44%), Gaps = 19/431 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T DL + G +GIS DSR+ F A++G +D H F+ +G Sbjct: 4 TLSDLQPWLAGARANG--DASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMDGLAARGV 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VVV + IP V D AL +A R + +I +TGS GKTT KEM Sbjct: 62 AAVVVER----VPKGMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEM 117 Query: 126 LTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 L L + A G++NN IGVPLT+ R+ + ELGM+H GEI L+ + Sbjct: 118 LAAILGTALGADHFLATRGNFNNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIA 177 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P + ++ H +E +A + L G DD + L + + A+ Sbjct: 178 QPTLGLVNNAQREHQEFMVSVEAVAKENGAVISALPANGIAVFPADDPYAPLWRGLATAI 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G + + +FG S +AD WK S ++V+ ++ V G H +N L + Sbjct: 238 GQRKVMTFGFSDDAD-VSCSWKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIAC 296 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +D ++ L+ F P GR +R A +ID++YNANP S++AAI VL+Q Sbjct: 297 ALGIGIGIDAIVRGLAAFAPVNGRLQRKHAASGAQ---VIDDTYNANPDSVRAAIEVLAQ 353 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 R+ VLGDM E+G + +H ++ I H++ G A Sbjct: 354 APS----PRVLVLGDMGEVGNDGRQYHEEVGAYARGRGIQHLFTLGQLAQHSGSAF--GA 407 Query: 423 HVHYSETMDGL 433 H + ++ L Sbjct: 408 HARHFNDIEAL 418 >gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 822 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 101/466 (21%), Positives = 185/466 (39%), Gaps = 14/466 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M+ +T + + H G V I DSRS+ FFA++ DGH +I Sbjct: 1 MS--YTLERIASLVGAHLWG-SETVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 ++G VV+ V L AL +LA R ++ ITGS G Sbjct: 58 ELYRRGVRSFVVSRLPEDMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L LS K SYN+ IGVPL++ + + G+FE G+S GE+ L Sbjct: 118 KTVVKEWLYQLLSPEKNVTRSPRSYNSQIGVPLSVWNLDERSEVGLFEAGISEPGEMEAL 177 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +++P I V T + AH NF+ E+ K ++F+ + + Sbjct: 178 QSVIQPTIGVFTCLGDAHQENFTSYEQKCLEKLKLFKDAKVLVYDMDDARVVGCV----N 233 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + + ++ + ++ ++ + +GK I N + Sbjct: 234 RSAFKGEYFAWSRQRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVS 293 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L +T ++V P R + TLI++SYN++ S+ A+ Sbjct: 294 CLAVCLHLGMSPETIAARMAVLEPV---AMRLEVKEGRSGCTLINDSYNSDYNSLDIALD 350 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +++ +R +L D+ + G + + +A ++++ + G + A++ Sbjct: 351 FMNRRPDCAGRKRTLILSDIEQAGGAPEDLYGRVARLVAMRGVEKFIGVGPCLSAVQGLF 410 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + D L ++ +V+++K + S F L L Sbjct: 411 --GMEACFYRSTDELLGSGVLDMLHDEVILIKGARSFRFDVLTEHL 454 >gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Odoribacter splanchnicus DSM 20712] gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Odoribacter splanchnicus DSM 20712] Length = 428 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 205/461 (44%), Gaps = 33/461 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T L AI+GH I+ DSR I + F A+KG ++DG+ + A+++ Sbjct: 1 MTTIEKLYPAIRGH-----------RITTDSRQIIRGDIFIALKGENFDGNRYAAAALEQ 49 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA L +++ S G V D L L +LA R + I+ ITG+ GKTTTK Sbjct: 50 GAALAIIDNADYLSPG-----CELVADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTTK 104 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+ LS KT+A G++NNHIGVPLTL M +FGI E+G +H GEI+ L + Sbjct: 105 ELCHAVLSKKFKTFATQGNFNNHIGVPLTLLSMDETTEFGIVEMGANHPGEIKTLCEIAD 164 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P +IT I AHL F E I + K +++ L + ++ H Sbjct: 165 PDFGIITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQLSRDHK-- 222 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + D + KQ ++ + + V H +G + N + I Sbjct: 223 -----RYTYGQEGDLLKGEIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASAIG 277 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D A+ + P R + R N T+I ++YNANP+SM+A++ ++ Sbjct: 278 MHFGIDPLDIQTAIENYRPSNLRSQLIRSGRN----TIILDAYNANPSSMRASVGNFCEM 333 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 ++ +LG+M E+G + + H ++ + N ++L G + D + Sbjct: 334 PGE---HKVVILGEMLELGTENAAAHEEIVRLTQQGNFDRIFLIGNNFEHCAD---KCNF 387 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + + + +++S ++ + +K S R++ L Sbjct: 388 ITWFKDTESFMEYLKSHPLNDSFIFIKGSRGNKLERIVEYL 428 >gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa Temecula1] gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M23] gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa Temecula1] gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M23] Length = 468 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 185/469 (39%), Gaps = 26/469 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + G+ G V I D+R++ + A++G +D H F AV +GA Sbjct: 6 LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+V+ + L +P V D AL +A A + + ++A+TGS GKT+ K ML Sbjct: 64 GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119 Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 A S YA G+ NN IG+PL + P + DF ++E+G LG+I +LT + Sbjct: 120 VSILEHAAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A++ IAPAHL + +A K EI + G + D F L + Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG AD + + + + V G H N L Sbjct: 239 PAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + L + GR + LID+SYNANP S+ AI L+ Sbjct: 299 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 G VLGDM E+G + H ++ ++ G Sbjct: 356 ----AASGPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411 Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465 HV D L + L V G V V+VK S +++ LL Sbjct: 412 GHV--FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458 >gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia acidovorans SPH-1] gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia acidovorans SPH-1] Length = 471 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 116/467 (24%), Positives = 191/467 (40%), Gaps = 20/467 (4%) Query: 4 LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + T L+ IQ H + Q + + D+R++ + F A+KG +D + F+ Sbjct: 1 MMTLQQALELIQSHIPQARLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDANQFLAQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + + + V D L AL LA A R R +IA+TGS GK Sbjct: 61 AR----EAGAAAALAHGGLEAAGLAGIEVPDSLAALGALATAWRARFALPLIAVTGSNGK 116 Query: 120 TTTKEMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 TT +M+ L + A G++NN IG+PL+L RM + E+GM+H GEI Sbjct: 117 TTVTQMVASILRAHAGEAALATRGNFNNSIGLPLSLMRMTAQHRVAVLEMGMNHPGEIAE 176 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P +A++ H +E +A + L G D++ L + Sbjct: 177 LAAIGQPTVALVNNAQREHQEFMHTVEAVARENGSVLLSLPADGVAVFPAGDTYTPLWRE 236 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNM 296 + A FG+S + + +W V H G H +N Sbjct: 237 LAAAR---QCLLFGESADGAQVHARDALWLGDAWQFTLVTPEGEAPVRLHIAGRHNVRNA 293 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + LSVF P +GR + ++ T+ID+SYNANP S+ AA Sbjct: 294 LAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRTVTVIDDSYNANPDSVAAA 353 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I VL ++ ++ VLGDM E+G+ FH + + I+ ++ G + Sbjct: 354 IEVLRELPA----PQLLVLGDMGEVGDQGPQFHAEAGALARSLGIARLFTLGAQSTSAAT 409 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 A + E M L ++L + ++VK S +++ Sbjct: 410 AFGAGAR--HFEDMASLQQAACAALPEVGSILVKGSRFMKMEQVVQA 454 >gi|110640090|ref|YP_680300.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Cytophaga hutchinsonii ATCC 33406] gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406] Length = 842 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 100/466 (21%), Positives = 178/466 (38%), Gaps = 19/466 (4%) Query: 6 TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61 + ++L +QG I P F+ + IDSR + FFAI G H+DGH I Sbjct: 27 SVNELPGIVQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHAHITEMY 86 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +KG + +V + + V + AL A R + I+AITGS KT Sbjct: 87 KKGVRIFIVEKSISLNEIP-QAACIRVKSSVSALQACAAYRRKQLDIPIVAITGSNAKTI 145 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KE L+ +++ SYN+ IGVPL++ + GIFE G+S E++ L + Sbjct: 146 VKEWLSQTVAADYSVVKSPRSYNSQIGVPLSVWALNERHTIGIFEAGISTTKEMQALQKV 205 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + P I + T I AH F EE K ++F + + + HA Sbjct: 206 IEPTIGIFTNIGSAHDKGFKNREEKIQEKLKLFADCKVVIYCSDH----------EEIHA 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++ ++ S+ + + ++ L Sbjct: 256 EITAQHLPTFNWSLQSSATIEYSIAAKDSFQTQIEVKTKEHQGFFYLPFVDDASIENALH 315 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + L + + + G R LID+SYN + A + A+ L Sbjct: 316 VATTLFYLGYSIQEVSRKISGLQAVGMRLELKEANNDCYLIDDSYNNDLAGLSIALDFLE 375 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + + +L D+ E G S + ++A L+ + V G + LK + Sbjct: 376 HVKQSE--VKTVILSDVLESGLDSAVLYKEVASYLTTAQVQRVIAIGSQITELKK--WYN 431 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Y T + + ++ + ++V+VK + F ++++ L + Sbjct: 432 GRAEYYPTTEAFIKDLTKTVFEKEIVLVKGARIFQFEKIVSRLQHK 477 >gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] Length = 851 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 116/468 (24%), Positives = 188/468 (40%), Gaps = 23/468 (4%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A H +G + DSR F A++ DGH FI A+ GA Sbjct: 4 VADLIAA-GAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 VV S+ SI V +D L L A A + +AITGSVGKT+TK + Sbjct: 63 GVVCQ--YAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAI 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L+S S+N +G+ +T+A + + + E G H GEI L L P I Sbjct: 121 AQVLASRYSVLRSPRSFNADLGLSVTMAELAAQ-QWAVLEFGADHPGEIAQLCQLFPPEI 179 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 ++T + AHL F IA KA I + L G LN DD + ++HA Sbjct: 180 GIVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHA----R 235 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSI 305 + G++ + + + + + + + E G Q + + + Sbjct: 236 LLRVGQNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYV 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + +AL+ P GR + + T+ID+++NA P S+ AA+ L + Sbjct: 296 AGLSLAEMREALADLRPAHGRFN---PLVGRNGATIIDDTFNAAPESVYAALQTLGSLPA 352 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421 RIA+LGDM E+G S FH ++ + + + G + + Sbjct: 353 RR---RIAILGDMAELGAASARFHQQAGQIAAQ-HADLLITKGDQAALAATSAREASATY 408 Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 I+ + + + + L GD+V+VK + ++ LL Sbjct: 409 GYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLA 456 >gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] Length = 825 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 103/466 (22%), Positives = 189/466 (40%), Gaps = 15/466 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61 +++ ++L+ + + V + +S+DSRS+ FFA+KG ++DGHD++ Sbjct: 10 MFSSKEILRILDCKA-CEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLY 68 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++G VV + F VD+VL AL +LA R + KA ++ ITGS GKT Sbjct: 69 EQGVRNFVVTGLRAGFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTI 128 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 KE L LS Y SYN+ +GVPL+L M V I E G+S GE+ L + Sbjct: 129 VKEWLYQLLSDEPGIYRSPRSYNSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQAM 188 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +RP I + T + AH NF ++ + KA +F D L+ Sbjct: 189 IRPEIGIFTHLGDAHGENFESRQQKLAEKAILFRDCRCIIGREGEALDYIASRLR----- 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +G KNA ++ + + + + V + + + +N + + Sbjct: 244 -PDVKKMIWGSGKNATVRVEEKGSTAHERLVAVGYEHVAFTLSIPFPDEASFENCMNAVC 302 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + + ++ P R LI++ YN++ AS + A++ L+ Sbjct: 303 VLLLEGISPVFIAERVARLQPL---AMRMEIKDGINRCVLINDYYNSDAASFQLALNTLA 359 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 ++ +L D + G + + ++A +L +S G + K Sbjct: 360 M--QDAGREKVVILSDFVDTGTGERELYREVALLLRKAKVSLFIGIGEKLSRYKPYFL-V 416 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + D V+++K + F + L ++ Sbjct: 417 PRCRFYKDTDSFLRQENREQFKDQVILIKGARKFRFEYIAGFLQKQ 462 >gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70] gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70s] gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis Sweden2] gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/150] Length = 450 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAAERFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI +A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAVARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] Length = 451 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 134/460 (29%), Positives = 200/460 (43%), Gaps = 29/460 (6%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL T ++ G G +S DSR + E F A++GP++ G DF+ A Sbjct: 8 TPL-TAAEIAALCDGVHHG--ADFTALDVSTDSRRLQAGELFIALRGPNFRGEDFLAAAK 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA +V +P V D L AL LA R RS+A AITGS GKT+ Sbjct: 65 GQGAVAAIV----AEYQPDADLPQIVVADTLAALQALARDRRERSQAQFFAITGSNGKTS 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKE+L L + +T A +G+ NN IGVPLTL R+ + + + E+G +H GEI L L Sbjct: 121 TKEILQRLLQTRGQTLATLGNLNNDIGVPLTLLRLRDEDRYAVIEMGANHPGEIAALVAL 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RP +A+IT +APAHL+ F +E + +AK+EI+ + +L A Sbjct: 181 ARPDVALITNVAPAHLAGFGTLEGVIAAKSEIYAHSD-------GAIVLNLDLPAAARWQ 233 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + S N D + ++ S +++ G V +G H N L Sbjct: 234 DQFHDRPQYTFSLNIDADVTAHDLAADGSRFVLRVDGSDYPVAWQLVGRHNIMNALAACT 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L+ + A+ G T+ D++YNANPAS KAAI VL+ Sbjct: 294 AARLAGVSGAQMQATLTG----LALHQSRLAAIRVGAHTIYDDTYNANPASFKAAIDVLA 349 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 + + G M E+G + H D+A + IS W G + A Sbjct: 350 AAPQS-----LIIAGAMGELGAEEVALHHDVATYAATRGISAFWSVGDGL-----AQEYG 399 Query: 422 IHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 H+++T G L + V++VK S S + Sbjct: 400 ADRHFADTASAGAALAAYLADAPATVILVKGSRSARMEGV 439 >gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Dixon] gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M12] gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Dixon] gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M12] Length = 468 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 184/469 (39%), Gaps = 26/469 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + G+ G V I D+R++ + A++G +D H F AV +GA Sbjct: 6 LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+V+ + L +P V D AL +A A + + ++A+TGS GKT+ K ML Sbjct: 64 GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119 Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 A S YA G+ NN IG+PL + P + DF ++E+G LG+I +LT + Sbjct: 120 VSILEHAAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A++ IAPAHL + +A K EI + G + D F L + Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG AD + + + + V G H N L Sbjct: 239 PAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + L + GR + LID+SYNANP S+ AI L+ Sbjct: 299 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 G VLGDM E+G + H ++ ++ G Sbjct: 356 T----ASGPGWLVLGDMRELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411 Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465 + D L + L V G V V+VK S +++ LL Sbjct: 412 --GYVFADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458 >gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium resistens DSM 45100] Length = 516 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 140/496 (28%), Positives = 205/496 (41%), Gaps = 38/496 (7%) Query: 1 MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L T + + G + G P V G + DSR I P F A+ G DGHD+ Sbjct: 13 MIEL-TVGKIAEITGGELVDGADPDTKVLGPVEFDSRRIKPGGIFMALPGAQVDGHDYAA 71 Query: 59 H---------AVQK--GAGLVVVNTDMVASIGSLSIPVFGVD------DVLGALNKLAVA 101 V K GA +V + + + F D VL A+++LA Sbjct: 72 SAAEQGAALLVVGKRVGAPA-LVAPSVELRQEASNASAFEHDTQGHGAAVLAAIDRLARF 130 Query: 102 ARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 T++ +TGS GKT+TK+++ L T A GS+NN IG+P T R Sbjct: 131 NTDALVAEHGMTVVGVTGSAGKTSTKDLIGAILREAGPTVAPPGSFNNEIGLPYTALRAE 190 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + E+ +G IR LT + P+I V+ + AHL F + IA AK E+ E L Sbjct: 191 EGTKYLVSEMSARGVGHIRHLTEVTPPNIGVVLNVGSAHLGEFGSRDAIAQAKGELVEAL 250 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS------- 270 + G LN DD + A++HA ++ S + A ++ S+ Sbjct: 251 PENGLAVLNADDDKVAAMAARTHARVVRFSTSQETCEWAGREVAVDYYASDIQLDEVARA 310 Query: 271 -WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + G + V G H N L + +AL+ Sbjct: 311 RFALHHPYGDPVAVELGVFGAHQVSNALAAAAVGMECGMSATDVARALNGHVAASVNRMD 370 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSF 388 R G T+I++SYNANP SM+A I L+ + +G AVLG M E+G+ + Sbjct: 371 VRTRARDG-VTIINDSYNANPESMRAGIDALAYTASGRDGAESWAVLGQMGELGDDATEA 429 Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445 H DL LS I H + G + AL A + H E D F+ SL D Sbjct: 430 HADLGHSLSQRRIRHAVIVGNGVNQQALAHAAREDGVDTHVVEDADAAVNFLDLSLRKSD 489 Query: 446 VVVVKSSNSCGFYRLI 461 VV+VK+S S G + + Sbjct: 490 VVLVKASYSDGLWAVA 505 >gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 450 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAAERFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI +A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAVARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDTVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 503 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 114/481 (23%), Positives = 189/481 (39%), Gaps = 28/481 (5%) Query: 2 NPLWTFHDL-----LQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54 P+ T + Q +G Q + + D+R++ + F A++G +D + Sbjct: 4 TPMLTLQQAHALVQARIPQARLVGGPDALQLPLGRVHTDTRTLQAGDLFVALRGERFDAN 63 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 +F+ A G + + +P V D L AL LA R R +I +T Sbjct: 64 EFLAQARA---GGAAAALAHPGRLEAAGLPGIEVPDTLAALGALAAGWRARLDLPLIGVT 120 Query: 115 GSVGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 GS GKTT +M +A G++NN IGVPL L R+ + + ELGM+H Sbjct: 121 GSNGKTTVTQMTAAVLRAWKGDAAFATQGNFNNDIGVPLMLLRLRAAHEAAVIELGMNHP 180 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GEI L + +P +A++ HL + +A + L G DD++ Sbjct: 181 GEIAVLAGIAQPTVALVNNAQREHLEFMHTVRAVAEENGSVISALPAGGVAVFPADDAYA 240 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGY 290 L + G + +FG + +R + E V + + G Sbjct: 241 PLWR---GLAGARRCLAFGMEPGSAAGVRCTRAHWEAGAWNVHIDTPLGGFDGTVRIAGR 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDES 345 H N L A +D + L+ F P +GR + + + T +D++ Sbjct: 298 HNVANALAATACALAAGAPLDAIARGLAAFEPVKGRSRAFTAAVPQPGGGSRRITAVDDT 357 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 YNANP SM AAI VL ++ G R+ V+GDM E+G+ FH + I ++ Sbjct: 358 YNANPDSMHAAIDVLGELP----GPRLLVMGDMGEVGDQGPQFHAEAGSHARDRGIERLF 413 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 G + A + + M L ++ + V+VK S +++ L Sbjct: 414 ALGALGIHAVQAF--GPQARHFDDMASLLAAVREAAPSAGSVLVKGSRFMKMEQVVQALE 471 Query: 466 E 466 Sbjct: 472 A 472 >gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] Length = 468 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 119/469 (25%), Positives = 183/469 (39%), Gaps = 26/469 (5%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + G+ G V I D+R++ + A++G +D H F AV +GA Sbjct: 6 LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+V+ + L +P V D AL +A A + + ++A+TGS GKT+ K ML Sbjct: 64 GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119 Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 A S YA G+ NN IG+PL + P + DF ++E+G G+I +LT + Sbjct: 120 VSILEHAAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKSGDIGYLTDI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V P +A++ IAPAHL + +A K EI + G + D F L + Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + FG AD + + + + V G H N L Sbjct: 239 PASCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + L + GR + LID+SYNANP S+ AI L+ Sbjct: 299 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 G VLGDM E+G + H ++ ++ G Sbjct: 356 T----ASGPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411 Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465 + D L + L V G V V+VK S +++ LL Sbjct: 412 --GYVFADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458 >gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1] gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1] Length = 824 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 97/471 (20%), Positives = 186/471 (39%), Gaps = 16/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M ++ +++ I G + + DSRS+ + FFA+K DGH +I Sbjct: 1 MI--YSIEEVITQIGAQRYG-SKSAQIGFLLTDSRSLCFPEETLFFALKTDRNDGHHYIS 57 Query: 59 HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VV + + V + AL +LA R I+ ITGS Sbjct: 58 ELYRRGVRNFVVSSVPVDYEHLYPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS SYN+ +GV L++ + + GIFE G+S GE+ Sbjct: 118 GKTMVKEWLYQLLSPQFFVTRSPRSYNSQVGVALSVWLLNEETQVGIFEAGISEPGEMAA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L H+++P IAV+T I AH NF+ +E+ K + + + DD + + Sbjct: 178 LQHMIQPTIAVLTNIGDAHQENFASMEDKCREKMILL---KDAEILVYPADDPIIQKVVN 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 S G K +S F ++ ++ + + + I + + Sbjct: 235 DSDLRGKKLAWSMSDKSAP-FYIKTVEKKATMTTITYVYHEHEDWFSIPFIDEASVADAI 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + + + P R Q TLI++SYN++ S+ A+ Sbjct: 294 ECAVVALEMGMSMSALDERMQQLEPV---AMRLEVKEGQHGCTLINDSYNSDINSLDIAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ R ++ D+ + G + +++ + +S + G + A ++ Sbjct: 351 DFMNRRPDQQNRSRTLIISDIDQSGRQPSELYKEVSNLAVKRGVSQLIGIGQQLSANRNL 410 Query: 418 LPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + T++ + + L +V+++K + F +L L + Sbjct: 411 IEMPKKF-FFPTVEAFEKSEVFAQLH-DEVILLKGARRFNFDQLTERLERK 459 >gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter heparinus DSM 2366] gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366] Length = 817 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 98/470 (20%), Positives = 196/470 (41%), Gaps = 19/470 (4%) Query: 1 MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFI 57 M+ L + + + + + ++ + IDSRS+ FFA+KG DGH F+ Sbjct: 1 MSSLIYNIKHIAGILGIKNFEVQKDAIISKLVIDSRSVIDPDGSLFFALKGQR-DGHGFL 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A G V++ + + V DVL AL+ +A R + ++ ITGS Sbjct: 60 KDAYANGIRNFVISEAKYTRLFP-DANILLVQDVLLALHTIAKYNRNQYDLKVLGITGSN 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L L++ S+N+ IGVPL++ + GIFE G+S E+ Sbjct: 119 GKTIVKEWLYQLLAADHNIVRSPKSFNSQIGVPLSVWEITAIHTLGIFEAGISKTDEMDA 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P++ ++T + AH F ++E K ++F + + L Sbjct: 179 LASMIKPNVGILTNVGEAHAEGFVSLKEKLLEKLKLFNDADLFIYAPEYTAGLSTDDLPG 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K T +S+ K + AD Q+ + ++++ +G +E + +N + Sbjct: 239 K-------TKFSWSKKQQADLQILFVEPIDGKNYIRADFKGIEIECLIPFSDQASVENGI 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L + A R ++ID+SY+A+ +S+ A+ Sbjct: 292 ICWATLLALGYTPEE---ADKRLEKLTRVSMRLELKNGINQCSVIDDSYSADISSLAIAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L+ + H + +L D+ E G+ ++ + ++A +L ++ + G H+ Sbjct: 349 DFLNLQNQHPKK--TLILSDIYETGKTNRVLYTEIAALLKQKHVDRLIGIGTHISESASL 406 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + E+ + + + ++VK + F R+ L+ ++ Sbjct: 407 F--DMEASFYESTQAFIDNFPALHFNNETILVKGARRFEFERISKLIAQK 454 >gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus scotoductus SA-01] gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus scotoductus SA-01] Length = 428 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 97/458 (21%), Positives = 174/458 (37%), Gaps = 42/458 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + +A G V + DSR P F A+ G G +++ A KGA Sbjct: 10 TPEWVARATGGRLHPGG--KPVRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKGA 67 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 LV+ + A+ V D AL +L A R ++A+ GS GKTTTKE Sbjct: 68 HLVLSDRPGPAT--------VEVVDTHQALLRLGRALRELFPGQVVAVGGSSGKTTTKEA 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L A G+ N + L R+ + ELG+ +GE+ L L RPH Sbjct: 120 LAQGL----GFPAPPGNQNTAPPLARFLLRLDPQAPGCVVELGVDRVGEMAELMGLARPH 175 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV+T + HL F +E + +A + +A + Sbjct: 176 LAVLTALGEEHLEAFGSLEGVVEEEAGLLSAP------------------QALVSLQAAE 217 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + FG + ++ + + + + + Sbjct: 218 VLERFGLGRGLPTYGFGEATFRGENLRLLLHESRFRYGALEVHIPYPGMGPALAALAALG 277 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + K ++ + ++++YNANP S+KA ++ L+ Sbjct: 278 VAEMLGLNPKEVAERLAHLVLPPGRMERREKDGVVFLNDAYNANPLSVKAGLAWLALQP- 336 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 GR+ VLG+M E+GE + H+++A+ + + ++L G + A + Sbjct: 337 ---GRKWVVLGEMRELGEEALRLHLEVAQEAARLGLKPLYL-GPYAKAQASLGGEAAEG- 391 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 ++ +++ + GD+V +K+S S G R++ L Sbjct: 392 ----LEEAVGWLKERVQPGDLVYLKASRSVGLERILEL 425 >gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica OSU18] gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis subsp. holarctica OSU18] gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 452 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F I + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S ++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ ++L G ++L A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLLDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + + VK + S ++ + E Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSIKLTVKGARSFKMEEVVKFVKE 450 >gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira hyodysenteriae WA1] gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira hyodysenteriae WA1] Length = 450 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 112/468 (23%), Positives = 199/468 (42%), Gaps = 32/468 (6%) Query: 7 FHDLLQAI---QGHSIGIVPQGFVNG---ISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59 D++ + +N IS DSR + F AIKG +DG+ F L Sbjct: 6 LKDIIAVTKELNSKCFKNIEDLNLNKELEISTDSRDNFDENKLFLAIKGEKFDGNKFALE 65 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 KG +++ + VF DD + KLA R R +I+ITGS GK Sbjct: 66 TYNKGCRYFILSDASIKL--PDDAVVFYADDTILFFIKLAREYRRRFNIPVISITGSCGK 123 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTKE+ + LS+ K G+ NN IGVP T+ + + + E GM+H E+ ++ Sbjct: 124 TTTKELTHLFLSTKYKALKTEGNLNNEIGVPKTIFNLDDSYEIAVIEAGMNHENELLRIS 183 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + + +I + P H++ IE IA AK+E+F + +N + + ++L+ ++ Sbjct: 184 EAIEANTVIINNVEPVHIAYLGSIENIAYAKSELFNHTRENANAVINKNTNCIDILEKEA 243 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 IK I K+ ++ + G + + G N+L Sbjct: 244 SRNNIKNII-----------EADIKEIIKKDDNTFEYNGITFKHNLI--GDFNLHNVLSA 290 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + D+ + K +N +I++ YN+NPA++ ++ Sbjct: 291 LKAAELYDVDLQKC----ADILITYESQKNRMQIINIKGCNVINDCYNSNPAAL---KNM 343 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDAL 418 + +S E ++IAV+GDM E + S+H D+ ++++ NI V G H + D + Sbjct: 344 IKFLSQRSESKKIAVIGDMLETETENSSYHKDIGKIINELKNIDTVIAVGKHSKDIYDTV 403 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +Y E ++ L +++K+S GF +I+ + Sbjct: 404 --NCEKYYFENAQSSVEKVKEFLKYDTAMLIKASLGMGFAVIIDSIKN 449 >gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] Length = 464 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 218/470 (46%), Gaps = 27/470 (5%) Query: 8 HDLLQAIQGHSIGIVPQ---GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 D+ + G +NG + IDSR+I+ + F A G +DGH+F+ A Q Sbjct: 6 ADIQRVTGGILHNTSLSESLLPINGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQS 65 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA L +V + + +P V +V A++ +A R T+I ITGS GKTT Sbjct: 66 GASLAIVTR-----VQEIDLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK +L LS T A G+ NN IG P+T++R+ + + E G G+I L + Sbjct: 121 TKSVLAYVLSKFGNTVATHGNQNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKI 180 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 P IAV+ + AH+ +E + S KAE+ L + + LNYDD L Sbjct: 181 AVPDIAVLLSAGHAHVEKSGSLESVCSMKAELARDLPEGSKVLLNYDDPRIARL------ 234 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + Y FG K A F+ + ++ V Q S+EV IG H N+L L Sbjct: 235 -SVGNRYYFGTDKRAHFRASHVETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALS 293 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + +L D + + +S +P +GR + + G F++I ++YNA+ S+K A+ L Sbjct: 294 TLVLLGFDAEVCARYISEVNPIDGRMQY----IPLGDFSIIHDAYNASFESVKCALDSLV 349 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420 + RRIAVLG + +MGEL+Q + L + +I+ + + + + L + Sbjct: 350 VL-GSLAKRRIAVLGRIHDMGELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAK 408 Query: 421 S---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + E ++ I GD+V+ K+SN+ F L+ + + Sbjct: 409 GVPNKEIVWFEDLETAKHEIFDLFSPGDIVLFKASNAENFSSLVESVKHK 458 >gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] Length = 452 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 109/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L IQ + + ++I+S + F I + DGH+FI A Sbjct: 1 MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S ++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ ++L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466 + + Y E+ D L + L + + VK + S ++ + E Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSIKLTVKGARSFKMEEIVKFVKE 450 >gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126] gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126] Length = 821 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 176/457 (38%), Gaps = 13/457 (2%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 + G + + I IDSR+ F AIKG +DGH+FI G ++ Sbjct: 11 ILNGEICQLQKDYTIENIFIDSRNAVSNIKNLFIAIKGERHDGHNFIADLYSNGIRNFII 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + ++ F ++ + AL LA R K +I ITGS GKT KE L + Sbjct: 71 DEEIKVDKYPE-ANFFKTENSINALQALAGYKRKNFKGNLIGITGSNGKTIVKEWLAKLI 129 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 S+ Y SYN+ +GVPL+L + D+ I E G+S +GE+ L +++P I + T Sbjct: 130 ESVYSVYRSPRSYNSQVGVPLSLWHLNHYQDYAIIEAGISKMGEMEKLEAIIKPKIGIYT 189 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + AH F +EE A KA++ F + H+L F Sbjct: 190 NLGTAHDEGFPSLEEKAHQKAQL------FKDSSTIIFCKDFPEISNALHSLPKLEEKEF 243 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 D + + ++ + + + ++ + +L + Sbjct: 244 IGWSFEDNTSNYFVETEGRNNGTAIRIPFEEQFHIFQVPFQDYASLENITHCLLLLLHEG 303 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + + R + L+D+SYN + + A+ SQ + Sbjct: 304 LPIKVIQNTLNDIKSLNMRLETKKGKNSTYLVDDSYNNDLVGLDTALQFFSQQKQFQKR- 362 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 I +L D+ E G S+ + LA+ ++L ++ V G + L+ + + Sbjct: 363 -ILILSDLLETGLSSEVLYQQLADRIALEKLNLVVGIGSEIRMLEKFYTSDLKL--FPNT 419 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + ++++K + F ++ L ++ Sbjct: 420 ASFLEYEKENSFQESLILIKGARKFNFESIVQRLEQK 456 >gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Scardovia inopinata F0304] gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Scardovia inopinata F0304] Length = 524 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 125/516 (24%), Positives = 197/516 (38%), Gaps = 60/516 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ-----------GFVNGISIDSRSIAPQEAFFAIKGP 49 M L + Q + + + + DSR ++ F AIKG Sbjct: 1 MIAL-SVFQAAQILSATLVSSPSDSSQAGDRSDSSTKITSVVTDSRQVSEGSLFVAIKGE 59 Query: 50 HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---ARLRS 106 DGHD++ A + GA +V + ++ +P V D +G+L +LA R + Sbjct: 60 RVDGHDYVNQAARAGACAALVEHPVEGAV----LPQLVVTDTIGSLGRLARYNISRRRQI 115 Query: 107 ------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 T++ ITGSVGKTTTK+++ L + T A +GS+NN IG+PLT ++ Sbjct: 116 ALAEGKDFTVVGITGSVGKTTTKDLVKDLLQTAGTTIAPVGSFNNEIGLPLTAVKVDETT 175 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + E+G S GEI +LT LV P IAV + AHL F ++ I AK+E+ + L Sbjct: 176 RYFVAEMGASAAGEIAYLTRLVPPDIAVELKVGAAHLGGFGSVDGIRQAKSELVQALTSQ 235 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTI-------------YSFGKSKNADFQLRKWKQCS 267 G LN D L+ +HA + A + + Sbjct: 236 GIAVLNAQDPNIRLMTGSTHASTLVWFSDGRIDPQNLPGDSRKQIFIYATDTRQDQEDHP 295 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + L G + + G+ M +++ + ++ Sbjct: 296 SFTLHLPDLPGIPVTLGLSGVHNVMNALAAVSVAYCLGVRPQTIASVLFNHKAMSPHRMA 355 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGEL 384 FTLID+S+NANP SMKA + LS G +IAVLG M E+G Sbjct: 356 VSLVTLTAGESFTLIDDSFNANPDSMKAGLDALSGWKSAESGNEPVKIAVLGSMLELGPR 415 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----------------IHVHYSE 428 + H L + +V G D L + + + Sbjct: 416 EEDLHHSLGAYAAQS-ADYVVTVGSETDDHLDTLASALCQGACQRAEQSPVRLLKAYEEH 474 Query: 429 TMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLIN 462 + + G VV++K S++ G L N Sbjct: 475 SAGQAATRVAQLARQNPGSVVLLKGSHASGLQTLAN 510 >gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coriobacterium glomerans PW2] gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coriobacterium glomerans PW2] Length = 478 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 123/481 (25%), Positives = 188/481 (39%), Gaps = 25/481 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T D+ G IDSR + F A G H DG+DF + A Sbjct: 1 MIEI-TAADMTAITGSRLCAGPSDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAA 59 Query: 61 VQKGAGLV-VV---NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 VQ GAG V + + ++ ++ V +D L LA R R ++ ITGS Sbjct: 60 VQAGAGAVVLTREPSRELCSAADQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGS 119 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 +GKTTTK+M+ LS+ + +A IG+ NN IG+PLT+ P D I E+GMS GEI Sbjct: 120 IGKTTTKDMVAALLSTRYRVHATIGNRNNLIGMPLTVLSAPEDTQALILEMGMSASGEIE 179 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ P A+IT I +H+ + IA AKAEI G + L+ Sbjct: 180 RLSRCAAPTHAIITRIGTSHIGMLGSRDAIARAKAEIVSG---MIPWSAPECERSPLLVL 236 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + F + L + ++ + +L + Sbjct: 237 SSEDDFTSFISDRFAEPAGVRIALAGTRADADVTVRRCRLDDQGCASFELSFRDGCQLKA 296 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG----------KRYRCALNQGFFTLIDESY 346 + + A A + R + L G +ID+SY Sbjct: 297 NLAAPGAHAVQDAALAAALAYDLGVSPRDMIAAFGALAITSHRQQIRLASGGAKIIDDSY 356 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA+P SM A + +L +S IAVLG+M E+GE S+ H + + + + Sbjct: 357 NASPESMAAGLDLLLALSGARRR--IAVLGEMGELGERSERMHALVGAYAAAKQLDLLVC 414 Query: 407 SG-FHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 G + DA + + + + + S L GD+V+VK S G R + Sbjct: 415 VGHEAARTMADAARLMGMPAHRIEIASSAHAVLDRFGSGLGRGDLVLVKGSRFVGLDRFV 474 Query: 462 N 462 Sbjct: 475 E 475 >gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/11023] Length = 450 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAAERFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI +A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAVARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145] gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145] Length = 818 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 93/465 (20%), Positives = 175/465 (37%), Gaps = 20/465 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62 ++ + I S P ++ + DSR + FF +KG + H +I Sbjct: 6 YSIEQISALISEKSSLPFPNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYH 64 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KG V D L AL LA R + +I ITGS GKT Sbjct: 65 KGVRSFVYYDQGFDITNFPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGKTVV 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L+ SYN+ IGVPL++ +M + IFE G+S GE+ L ++ Sbjct: 125 KEWLYQLLAYKYTIVRSPKSYNSQIGVPLSIWKMDTLYNLAIFEAGISQTGEMERLEKII 184 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I V T I +H FS EE + K ++F + K ++ Sbjct: 185 KPSIGVFTNIGSSHDEGFSDKEEKIAEKFKLFAHVNKLICNKEF----------SEYAPQ 234 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + A+ +++ + ++ + + + + +N + L + Sbjct: 235 SVDLYTWSLDDNTANLYVKEISVEDTGTSIKSTYEDREISIKIPFKDKASTENAITCLLV 294 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + +S HP R ++ID+SYN++ +S++ A+ L+ Sbjct: 295 MLVFGYSESEIEDKMSKLHPV---KMRLEMKSGINNTSIIDDSYNSDLSSLEIALDFLNH 351 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 H +L D+ + G Q + +A +L + V G + ++ + Sbjct: 352 QQQHQNK--TLILSDIQQSGLDGQQLYQTVARLLESKGVDKVIGIGEEISKHQNLFGSNS 409 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + S + +++K + + GF ++ + L ++ Sbjct: 410 S--FFSDTSNFLDKLDLSAFRDETILLKGARTFGFEKISSALSQQ 452 >gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 452 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 114/462 (24%), Positives = 184/462 (39%), Gaps = 19/462 (4%) Query: 7 FHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + A+ G + + IDSR F A KG DG+ + +Q GA Sbjct: 3 VTQAINAMGGVLRSHVQDDQQIRNFVIDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V+V + V + V D L AL L R K IA+TGSVGKTTTKE+ Sbjct: 63 CMVIVTDEDVYEQIEGNK--VLVADALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKEL 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 ++ L + K+ Y G++NN +GV + A M + + +FE+G + GEI L+ ++P Sbjct: 121 ISEVLRTRKRVYTAYGNFNNELGVAICAANMKMGTSYSVFEMGTNSAGEIEALSKYIKPD 180 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V+T I AH+ F GIE +A K I G++K G ++ Sbjct: 181 ICVVTGIGHAHIGRFEGIEGLAKEKLSIVSGMQKRGVLY---IADSCRRFVTSEVLEKTD 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 Y + + + + + H N L + I Sbjct: 238 VRYFGTDMASHIILGDVNRTVDGDFYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMA 297 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +K + F PK+GRG+ +ID++YNA S+ +A++ L+ I Sbjct: 298 AGLSYTDVMKGIRKFQPKDGRGRIKEVDG----IKVIDDTYNAGFESVISAMTNLAGIPV 353 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 + A +G+M E+ + + L + S G + R+ ++ Sbjct: 354 EKK---TAFIGEMGEIEGYEEMLYFKLMKKASELTNVEFVFVGKNFAR----FERTGNIK 406 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +T + I + G V+ K+S F LI L EE Sbjct: 407 VVQTREEAMQLISK-VSCG-TVLFKASRGQKFEELIRHLEEE 446 >gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Nakamurella multipartita DSM 44233] gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Nakamurella multipartita DSM 44233] Length = 510 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 120/503 (23%), Positives = 187/503 (37%), Gaps = 48/503 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + I V+ + D+R I P F A++G DGHDF A Sbjct: 1 MIAL-TLAQIADEIGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDFAATA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----------VLGALNKLAVAARLRSKAT 109 GA V+ + + A +P+ V D A + R Sbjct: 60 AAAGAVAVLGSAPVSAP-----LPLLQVPDRPDNAGVLDALAALARASVTALVRE-HGLQ 113 Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 ++ +TGS GKT+TK+++ L ++ + A S+NN +G P T R F + Sbjct: 114 VVGVTGSSGKTSTKDLIAAVLRAVPGTGPERVIAPPESFNNELGHPYTALRADESTAFLV 173 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TG 221 EL G I L + I + + AHL F +E IA AK+E+ + L Sbjct: 174 LELSARGAGHIAALARVAPLRIGAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQP 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKS 280 + + L A L + G A + + ++++ + S Sbjct: 234 LTGGVAILNADDALVAAMAELTAAEVVMVGTGAAAQVRATDVGQDDADRARFTLVTPEGS 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G H N L + + +ALS P N T Sbjct: 294 APVTLRVVGAHQIGNALTAAAVGRAVGLGPQAIARALSQAEPASRWRMEVTELANGV--T 351 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 LI+++YNANP SMKAA+ LS I R AVLG+M E+G+ + + H + ++ Sbjct: 352 LINDAYNANPHSMKAALHSLSTI--GRGRRTWAVLGEMAELGDEATAAHDQIGRLVVRLG 409 Query: 401 ISHVWLSG---------------FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD 443 + + + L L L +D + L Sbjct: 410 VDRLLVVEGPGAATGAAVGGRTAPRALHLGAHLEGSWGGESELVPDVDDAVAILLDELEP 469 Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466 GDVV+VK+S S G R+ L+E Sbjct: 470 GDVVLVKASRSAGLERVALRLIE 492 >gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010] gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010] Length = 826 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 188/471 (39%), Gaps = 14/471 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN ++ + + G V + ++ + DSRS+ + FFA+K DG+ +I Sbjct: 1 MN--YSIEKVATLVGACRYGNV-ETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIP 57 Query: 59 HAVQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +G VV V + AL +LA R +I ITGS Sbjct: 58 ELYSRGVRNFVVEAIPENWDMLYPQSNFLEVSKTIEALQRLATCHRAEFHVPVIGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L LS K SYN+ IGVPL++ + + G+FE G+S GE++ Sbjct: 118 GKTVVKEWLYQLLSPNKVVTRSPRSYNSQIGVPLSVWLLNEQTEVGVFEAGISERGEMKA 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I V T++ AH NF+ +EE K +F D+ Sbjct: 178 LREIIQPTIGVFTSLGEAHQENFASLEEKCMEKLCLFRDTNAIVYPL---DEELVVRCIK 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +S S F K + V QGK I +N + Sbjct: 235 TLNYKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSI 294 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + I L +V T + + P R Q TLI++SYN++ S+ A+ Sbjct: 295 TSAIICLHLGVEVKTLAERMPQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +++ H +R +L D+ + GE ++ + +A + + G ++ + A Sbjct: 352 DFMNRRPDHKGRKRTLILSDIFQSGEDEKTLYQRVAFLAEKRGVEKFIGIGEGLIRQRKA 411 Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + ++ T+ L +V+++K + GF +L LL+ + Sbjct: 412 FNKFGKKYFFATVGSFISSEAFRELR-DEVILLKGARQFGFDQLTELLVNK 461 >gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [beta proteobacterium KB13] gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [beta proteobacterium KB13] Length = 451 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 120/441 (27%), Positives = 207/441 (46%), Gaps = 23/441 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + ++ DSR+ E F A++G +DG +FI +++ + N + + Sbjct: 27 SDVNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ-----KYNARYAV 81 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYN 144 V+ L +L+ + T +AITGS GKTTTK+++ L + G+YN Sbjct: 82 VESGKKFLIELSKLILKKLSLTKVAITGSNGKTTTKDLIVHFLKNKFNDDAVLFTKGNYN 141 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IG+PL++ + F +FE+G +H GEI L ++RP+I++IT I AH+ NF E Sbjct: 142 NEIGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNISIITNIGDAHIGNFGSKE 201 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +IA K +IF L+ LN DD +F++L +F S N D Sbjct: 202 KIAEEKKQIFNFLKTNELKILNKDDEYFQIL-------NQSPGKTFCISNNNDDSDVLSF 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + E + +E+ + +S+++ G H QN + + + D K Sbjct: 255 KSCELNMIELTHKFQSIKIKFQLTGQHNLQNFAIACAALINIGIDFQELEKYFGNLESTN 314 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR K+Y N LID+SYN+NP+S+ +AI L+ E +I ++GDM E+G+L Sbjct: 315 GRFKKYIFKDNIE---LIDDSYNSNPSSLISAIDHLN----QSEKNKILIIGDMGELGQL 367 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + +H+ + E + I+ V G A ++ + T + L ++ Sbjct: 368 TDQYHLQIIEEILKTKINIVLTMGKAFKAAIKKNNENL-ILNFSTYEDLLDKALPAIKKD 426 Query: 445 DVVVVKSSNSCGFYRLINLLL 465 +++VK+S GF +++ L Sbjct: 427 TIILVKASRFMGFENIVSQLK 447 >gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium marinum M] gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium marinum M] Length = 525 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 125/504 (24%), Positives = 203/504 (40%), Gaps = 51/504 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 +T ++ + + G + I PQ V G + DSR++ P F A+ G DGHD Sbjct: 4 YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAS 63 Query: 60 AVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-- 106 AV G +VV+ + + +L+ + D GA A+A ++ Sbjct: 64 AVAAGAVAVLAARPVGVPAIVVSPEPDVTADALTGVLEHDADGSGAAVLAALAKLAKAVA 123 Query: 107 ------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 TII ITGS GKT+TK+++ L + + A GS+NN +G P T+ R Sbjct: 124 AELVAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATRGT 183 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D+ I E+ H G I L + P I V+ + AHL F E IA K+E+ + + + Sbjct: 184 DYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQAVPAS 243 Query: 221 GTIFLNYDDSFFELLKA----KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275 G + LN DD + + +G T G + D + + Sbjct: 244 GVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDVWAGPVSLDRLARPQFTMH 303 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + +V G H N L + A V AL+ P R + + Sbjct: 304 AGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPV--SRHRMQVSTR 361 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPH--------------GEGRRIAVLGDMCEM 381 T+ID++YNANP SM+A + L+ I+ R AVLG+M E+ Sbjct: 362 PDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPGVRPQSRRSWAVLGEMAEL 421 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFL 435 G + + H + + ++S + + G + A+ D Sbjct: 422 GADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAMYHGAVMEGSWGTEAVSVPDRDAALA 481 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYR 459 +++ + GDVV++K+SNS G Sbjct: 482 LLRAEIQPGDVVLIKASNSAGLGE 505 >gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospirillum rubarum] Length = 495 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 90/471 (19%), Positives = 174/471 (36%), Gaps = 45/471 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 G+S D+R + P F A++G +DGHD++ A +KGA +V+ + A+ Sbjct: 28 PDDTPFAGVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEATG--- 84 Query: 82 SIPVFGVDDVLGALNKLAV-AARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 P+ V D AL LA R R ++ +TG+ GKTTT+E+L + LS+ ++ + Sbjct: 85 --PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSAEGRRPH 142 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP TL + E+G+ G++ +L+ ++ +++T++ HL Sbjct: 143 TNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMDYLSSVLVSDASIVTSVGEGHL 202 Query: 198 SNFSGIEEIASA-----KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 +E + G L + + + ++ G Sbjct: 203 ETLGSVEGVWKEKSHLLNWVRPGGAIVLPLDLLFRYPASPVFRERQRRFFFVELDPDPGD 262 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S + + + + + + + ++ + L A Sbjct: 263 SARGPRSVPEGSTILTGTLRKEEGGKWILSGTTGPESFSWKMPSPSSILAMDALLALAAG 322 Query: 313 AIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +S+ + L+ + YN+NP S++ A +++ Sbjct: 323 NALGVSLQEGANHLENFSPLPGRMQEKRTPEGALLLLDHYNSNPLSLRGAFQWCAEVWKK 382 Query: 367 -------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 G+ +AVLGDM E+GE S H + + + S ++ G ++ Sbjct: 383 EATLSRGEPGKLLAVLGDMLELGEDSPRLHREAGRIAAETPFSAIFYKGDFFQEFREGYL 442 Query: 420 RSIHVHYSETMDGLFLF-----------IQSSLVDGDVVVVKSSNSCGFYR 459 + L + L GDVV++K S + Sbjct: 443 SGKG-------EEARLVPLSGPPSSGQGVFPILTRGDVVLIKGSRGMHLEQ 486 >gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Gemmatimonas aurantiaca T-27] gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Gemmatimonas aurantiaca T-27] Length = 474 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 191/465 (41%), Gaps = 27/465 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 WTF + A+ G + GIS D+R IA + F A++G +D HDF+ A G Sbjct: 26 WTFERVAAALG---TGPSMPQPLAGISTDTRRIARGDVFVALRGDRFDAHDFLATAKDAG 82 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A VV+ A L +P + V D L AL +LA R +IA+ GS GKT+TKE Sbjct: 83 AAAFVVSDATRA--VGLGVPTYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTKE 140 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L ALS + +A G+ NN IGVPLTL +P D + ELG + GE+ L + P Sbjct: 141 LLKAALSGTFEVHATTGNLNNLIGVPLTLLAIPPHADIAVVELGTNAPGEVATLRAMSAP 200 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +AV+T+I HL + + + ++F G+ + + S +A++ Sbjct: 201 DVAVLTSIGEEHLEGLGDLAGVLREECDVFPGVRLAIIPVAHPEVSPMASERAEAVVTAG 260 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T + + + + L+G + Sbjct: 261 LTDADVAPEQWGLDDEGRPWFDVDGVHFTLPLRGAHQAANAMLAVAAARACGVPLESAA- 319 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 A P + T+I+++YNANP SM+AA+++L Sbjct: 320 -----------AGMAAMPVPNMRGVWETIG---QTTVINDAYNANPPSMRAALALLD--R 363 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 +R+A LG M E+G + H D+A + + + G A + P +I Sbjct: 364 VGEGRQRVAFLGTMRELGAQADVQHDDIARAALVSSADVIVGVGAFGDAFRRVAPDAINA 423 Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 V ++ + + + V+++K+S RL+ L Sbjct: 424 ASGRVIVADEPESAWTAAAPRVNRNAVILLKASRGVRLERLLPQL 468 >gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax delafieldii 2AN] gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax delafieldii 2AN] Length = 475 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 109/466 (23%), Positives = 188/466 (40%), Gaps = 22/466 (4%) Query: 4 LWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 + + ++I + V + D+R++ + F A+KG +D + F+ Sbjct: 3 MMNLQQAHAWICRSIPEARLVGDAATPVARVHTDTRTLQAGDLFVALKGERFDANAFLAD 62 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A GA + + + + +P V D L AL LA R + +I ITGS GK Sbjct: 63 ARAGGAVAAIAH----GGLEAAGLPGIEVPDSLAALGALAAGWRAQFGLPLIGITGSNGK 118 Query: 120 TTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 TT +M+ + ++ G++NN IGVPLTL R+ + E+GM+H GEI Sbjct: 119 TTVTQMVASILRAWKGEAAFSTQGNFNNDIGVPLTLLRLRAAHAAAVIEMGMNHPGEIAT 178 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P +A++ HL + +A + L G D + L A Sbjct: 179 LAAIAQPTVALVNNAQREHLEFMHTVRAVAEENGSVLAALPADGVAVFPAGDPYSALWGA 238 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + T + G D + + +E+ ++ G H N L Sbjct: 239 LAAPRRCVTFGAGG-----DVRCAQASWRQGAWAVEMVTPLGALSCSLQIAGQHNVTNAL 293 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 A +++ + LS F P +GR + + T++D+SYNANP SM+AAI Sbjct: 294 AAAACALAAGAPLESIARGLSAFTPVKGRSRAIGLRVADRQVTVVDDSYNANPDSMRAAI 353 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL+ + ++ V+GDM E+G+ FH + I H++ G A Sbjct: 354 DVLASLPA----PQLLVMGDMGEVGDQGPQFHAEAGAHARAAGIRHLYALGEQSAGAARA 409 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + H + ++ L + V+VK S +++ Sbjct: 410 FGAARHFNDMASLQAAVLQALPRVGS---VLVKGSRFMKMEQVVEA 452 >gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M01-240355] Length = 436 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 126/451 (27%), Positives = 197/451 (43%), Gaps = 22/451 (4%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V+ I DSR + FFA+ G +D HDF+ + GA VVV+ + ++ Sbjct: 3 SESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA 62 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138 VDD L AL LA A R + ITGS GKTT KEML L A Sbjct: 63 ----LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLA 118 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 G++NNHIG+PLTL ++ + + E+GM+H GE+ LT + +P A++ + AH+ Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNVLRAHVG 178 Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F G+ +IA AK+EI++GL G + +D+ + K + L +T + D Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFG----VDSGD 234 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + VV G H N + ++ + L Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 F +GR TLID++YNANP SMKAAI VL+++ RI V+GD Sbjct: 295 QGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347 Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436 M E+GE + + H ++ I + G + + + + D L Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L + V+VK S ++ L ++ Sbjct: 406 LRHDLPERATVLVKGSRFMQMEEVVEALEDK 436 >gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] Length = 427 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 98/433 (22%), Positives = 170/433 (39%), Gaps = 41/433 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P AF A+ G G+ FI AV +GA V+ + + V Sbjct: 30 LVWDSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKA--------VQVQ 81 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL +L A R R ++ +TGSVGKTTTKE L L A G+ N + Sbjct: 82 DPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQGL----AWPAPEGNLNTPPAL 137 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 +P + ELG+ +GE++ L L +P I V+T IAPAHL +E +A Sbjct: 138 ARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLTAIAPAHLEALGSLEVVARE 197 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+++ + ++ G FQ R E Sbjct: 198 KSQLLQASRVRIASTQAARYLSLPEVRTYGFEEGT-------------FQGRDLTITPEG 244 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + + + + + + + Sbjct: 245 TRFRYGQRTLHLPYP--------GYGPALGALAALAVAEVLGQDLDQVCQHLEALRLPPG 296 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + +G I ++YNANPAS++A + L + GR+I VLG M E+G ++++H Sbjct: 297 RMHLVRRGGVLFIHDAYNANPASVRAGLESLDRFP----GRKIVVLGTMKELGPQAEAYH 352 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ A + + V+ G + + ++ V + +++ + GDV+ + Sbjct: 353 LEAARLAARVAQRAVF-VGEYAPQMARLFEGALAVT---DAETARQALKAQVRPGDVIYL 408 Query: 450 KSSNSCGFYRLIN 462 K+S + G R++ Sbjct: 409 KASRAVGLERVLE 421 >gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bradyrhizobium sp. BTAi1] gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 458 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 198/486 (40%), Gaps = 46/486 (9%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP---------- 49 M LWT ++ +A+ G P+ ++ ++ DSR++ P F A+ G Sbjct: 1 MTKALWTVAEVARALG--LAGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFA 58 Query: 50 -HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSK 107 DG +F +A Q GA ++V I +S+P V D L L LA AAR R Sbjct: 59 SSRDGWEFAANAEQAGAVAMIV----PHRIDGISVPQLVVPDTLIDGLWALARAARARFH 114 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +I +TGS GKT+TKE + + A S+NN GVPLTL + E+ Sbjct: 115 GPVIGLTGSAGKTSTKEFIAAYPGAS----ASPSSFNNFWGVPLTLCNADPSASVWVVEM 170 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 GM+ GEI LT L +P +A++ + P HL +E I K I GL G Sbjct: 171 GMNQQGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRKEKVSIARGLPSDGI----- 225 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 L+ A AD E + + G+ + Sbjct: 226 ------LVLPVDLAAPEWPGRVLRFGAGADVHAMSQVPAGESWDVTADIAGRHLAFSLTP 279 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 H N L L V+ D L+ + G G LID+S+N Sbjct: 280 GAPHRLHNALAALASVAAAGLDPVL----LARELGEVGIMTGRGVEQRIGEIVLIDDSFN 335 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 NPASM AA+ L GRRIAV+GDM E+G+ + ++H D+ + I V+ Sbjct: 336 GNPASMAAALDSLQARPVR--GRRIAVIGDMLELGDEAPAYHADMVGHV--TGIDGVYCV 391 Query: 408 GFHVLALKDALPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFY--RLINLL 464 G + L + LP + + E L + + L DVVV+K S F+ + + L Sbjct: 392 GPLMRHLFEKLPPEKRLGWHEDPATLDASQVAALLAPDDVVVIKGSKKI-FWVNKFVQKL 450 Query: 465 LEEFPA 470 A Sbjct: 451 AAALQA 456 >gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens F0305] gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens DSM 10105] gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens F0305] gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parascardovia denticolens DSM 10105] Length = 525 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 130/524 (24%), Positives = 200/524 (38%), Gaps = 67/524 (12%) Query: 1 MNPLWTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53 M + T + QA+ G + I Q V+ DSR + P F AIKG DG Sbjct: 1 MISM-TLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDG 59 Query: 54 HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--------- 104 H ++ A V + + S+P V+D + AL LA Sbjct: 60 HAYLEQAA----AAGAVAAVVDHEVAGASLPQILVEDTVRALGFLARHNIEKRRSLAGQA 115 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 R+ TI+ ITGSVGKTTTK+++ LS + T A GS+NN IG+PLT ++ + F + Sbjct: 116 RTPFTIVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLV 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+G S +GEI +LT + RP +AV + AHL F +E I AK+E+ L +G Sbjct: 176 AEMGASAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKSELVRALPPSGLAI 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----------------- 267 LN +D L+ + + + D Sbjct: 236 LNENDENIRLMPEMTGVRNLLWFGLHEDRPDEDRSDESETAYPSVPSAMSAAEIYGDQVQ 295 Query: 268 -----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 S+ G + G H N L + + + + L+ Sbjct: 296 VDDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYAMDLPTEAIAGILAHQGA 355 Query: 323 KEGRGKRYRCALNQGF----FTLIDESYNANPASMKAAISVLSQISPHGEG-----RRIA 373 + R + FTLID+S+NANP SMKA + L+ R+A Sbjct: 356 QSPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAWHAESRTRDERPYRVA 415 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------------PRS 421 VLG M E+G + H + L V G D L + Sbjct: 416 VLGSMLELGPNEKELHQRMGAYA-LSVADMVIAVGSEEEPHLDELAHDFVLGADHDQKEA 474 Query: 422 IHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINL 463 +H+ + + ++ + VV++K S++ G L + Sbjct: 475 GSIHWVHSAEQAADLVRGLEGEHRQTVVLLKGSHASGLQGLADY 518 >gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus erythropolis SK121] gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodococcus erythropolis SK121] Length = 519 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 121/506 (23%), Positives = 193/506 (38%), Gaps = 42/506 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T + + + G V G + DSR +AP F A+ G DGHD Sbjct: 1 MIPM-TLSRIAEIVGGTLHDVDDSSTQVTGTVEFDSRKVAPGGLFLALPGARVDGHDHAE 59 Query: 59 HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVD-D-----VLGALNKLAVA 101 AV G +VV V + G ++ + D D VL AL LA A Sbjct: 60 AAVAAGAVAVLAARPVGVPAIVV--PSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARA 117 Query: 102 ARLRS---------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 T++ +TGS GKT+TK+++ L + A GS+NN +G+P T Sbjct: 118 VVDELATDGTPADGGLTLVGVTGSAGKTSTKDLIAALLRECGEVVAPPGSFNNELGLPWT 177 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + R F + E+ +G + LT + P I V+ + AHL F E IA AK E Sbjct: 178 VLRADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGE 237 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E L + + + A + I G+S++ D + +Q+ Sbjct: 238 LVEALPSAADG-GVAVLNADDRMVAAMASRTKARIVFVGQSEDCDVRATD-VVVDDQARA 295 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 L + L + A A + K +R Sbjct: 296 SFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLEGTKAASARRMEV 355 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQSFH 389 T++++SYNANP SM+AA+ L ++ H R AVLG+M E+G S H Sbjct: 356 TERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEH 415 Query: 390 IDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVD 443 + + ++S + + G A+ +++ L Sbjct: 416 DAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEP 475 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 GD+V+VK+S S + + +L P Sbjct: 476 GDLVLVKASKSVELWTVAEAILAATP 501 >gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011] gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011] Length = 833 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 105/474 (22%), Positives = 197/474 (41%), Gaps = 22/474 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62 +T ++ + I+ IG Q +N + DSRS++ + FFA+ DG +I Sbjct: 3 YTIEEITRIIKAKRIG-DNQTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYS 61 Query: 63 KGAG-LVVVNTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 +G V+ N + V++ L AL KLA R + ++ I Sbjct: 62 RGVRNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGI 121 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKT KE L L+S KK SYN+ IGVPL+L +M D D I E G+S Sbjct: 122 TGSNGKTVVKEWLHQILASSKKIVRSPRSYNSQIGVPLSLWQMHSDADVAIIEAGISQPD 181 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E+ L ++RP I V+T + AH NF ++E K ++F+ + + D+ Sbjct: 182 EMGALESMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFKHCD---VVIYEADNDLIS 238 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +KS + +S + + ++ ++ + + G I Sbjct: 239 NCMSKSMLTSREIAWSRYDMERP-LFISGIQKDENETTISFRYLGLDNYYKIPFIDEASI 297 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N + L I L D ++ P R + +I++SYN++ +S+ Sbjct: 298 ENSIQCLAICLYLMIPADQIRAGMAQLEPI---AMRLEVKEGKNNCLIINDSYNSDLSSL 354 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 A+ + S +R +L D+ E G+ + + + +++++S + + G +++ Sbjct: 355 DIALDFHYRRSLQKGLKRTLILSDLLETGQNTSTLYRRVSQLISSKQVQRLIGVGKNLMN 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVVKSSNSCGFYRLINLLL 465 +I + L IQ + + +++K + GF +++ + Sbjct: 415 EFSKFS-TIEKDFFNNTADLIEAIQLGRIKFNHESILLKGARRFGFEKVLEEIE 467 >gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus rhamnosus MTCC 5462] Length = 462 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 119/482 (24%), Positives = 200/482 (41%), Gaps = 46/482 (9%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQ-------------EAFFAIKGPH 50 T ++ + ++ + G++ DSR + P F Sbjct: 3 MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLLSHCVASVTGTSLF-----QR 57 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKAT 109 + +G ++ + +P V D L A+ KLA ++ Sbjct: 58 R---------LLRGQSQLLWQRTICQMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPK 106 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++AITGS GKTTTK+M L++ +YNN IGVP+T+ M + + + E+GM Sbjct: 107 VVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGM 166 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G++ L+ L P +AVIT I AH+ F +IA AK EI +GL++ GT N D+ Sbjct: 167 DRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDE 226 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L ++ +FG + Q + +G Sbjct: 227 P----LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMG 281 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + N L L + + KAL+ F R + + ++ + YNAN Sbjct: 282 EYNVVNALAALLVGRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNAN 338 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +MKA I S+ GR IAVLGDM E+GE S++ H LA+ L + I V+L G Sbjct: 339 PTAMKAVIHDFSEF--QTAGRHIAVLGDMLELGEQSRTLHAGLADALDPHEIQEVYLYGS 396 Query: 410 HVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + AL +AL +H + + + +Q+ + D++++K+S+ ++ L Sbjct: 397 EMQALAEALTTKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMLLLKASHGLHLETVLAAL 456 Query: 465 LE 466 + Sbjct: 457 VA 458 >gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] Length = 450 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITYIDVQHAMHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia symbiont of Datisca glomerata] gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia symbiont of Datisca glomerata] Length = 475 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 126/470 (26%), Positives = 193/470 (41%), Gaps = 24/470 (5%) Query: 1 MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M T ++ G V G+ IDSR +A F A+ G DGHDF Sbjct: 1 MT--LTLREVAVVCGGRLDAVDDHDAAVTGVVIDSRQVAAGALFVAVAGERVDGHDFAA- 57 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V + + +P V D + AL LA R RS AT++A+TGS GK Sbjct: 58 ------AAAGAGAVAVLAARPVGVPAVVVADPVAALAALAAQVRTRSSATVVAVTGSAGK 111 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L + T A GS+NN IG+PLT+ R+ F + E+G G I L Sbjct: 112 TTTKDLLADLLGELGPTVAAAGSFNNEIGLPLTVTRIEPATRFAVLEMGARGPGHIAALC 171 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L RP I V+ + AHL + G IA AK E+ E + + + L A Sbjct: 172 ELARPRIGVVLNVGSAHLGQYADGRAGIARAKGELAEAASDAVVLNAD------DPLVAG 225 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + +FG+ + AD + + + + V + + Sbjct: 226 MAARARGEVITFGEGERADVRAHDVRVGDDGRARFDLVAAGERHPVALTLVGEHQVGSAL 285 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 V+I A ++ + R A+ T+I+++YNANP SM+AA+ Sbjct: 286 AAAAVAIRLGLPPARA-AEALSRARARSRWRMEVAVTDTGVTVINDAYNANPESMRAALK 344 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L +S R AVLG M E+G + H L ++ + + G + Sbjct: 345 TLVDLS--RGRRAWAVLGGMEELGASADDEHDALGRLVVRLGVEQLVAIGERARRIHLGA 402 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 S + ++ ++ LV GDVV+VK+S + G R+ + L Sbjct: 403 SLEGSWSGESVWVADVEQACTLLREQLVPGDVVLVKASRAFGLERVASEL 452 >gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] Length = 450 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235] gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235] Length = 435 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 112/435 (25%), Positives = 189/435 (43%), Gaps = 24/435 (5%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 G++ DSR I E F A+K DGHDF+ A + GA +V+ + +P V Sbjct: 2 GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDR----FQEEIELPQLVV 57 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 D+V AL LA R +A ++ ITGS GKTT KE+L L S T + G+ NN IG Sbjct: 58 DEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVL-ACLLSGFATLSTRGNLNNLIG 116 Query: 149 VPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 VP+++ R +F + E G+S GE+ L + P ++T + PAHL + +E +A Sbjct: 117 VPMSMLRPEGASCEFAVLEAGISEPGEMERLAAAINPEWGIVTALGPAHLEDLGTVENVA 176 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K ++F+G + + + A L + Y + + + Sbjct: 177 REKGKLFQGSRLRRVFAGESCEPYLSDMAAPRVLLVKQDPYLSVEWAFR------FSSEA 230 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 ++ +E ++ G + G+G +A N+ + L + +VD AL + P + R Sbjct: 231 GRTCLEQRIGGSVQRFEYEGLGAGLASNVALALATAFSMGLEVDQLRSALGSWKPSQMRN 290 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + + YNANP SM+ +++ +P GE R+ V+G M E+G + Sbjct: 291 EWKEIGGR----LVFLDCYNANPISMRDSLATFVSNTPEGE-PRMYVIGCMEELGSEASR 345 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVD 443 H +L L N + + G ++ + S H ET++ ++ Sbjct: 346 LHEELGREFPLRNQDFLLVIGSEAASVLRGMKDSGHEMDRCFEIETIEEASERLKDFAGS 405 Query: 444 GDVVVVKSSNSCGFY 458 V +K S Sbjct: 406 ---VFLKGSRRYRLE 417 >gi|149278412|ref|ZP_01884549.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] gi|149230782|gb|EDM36164.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] Length = 824 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 95/469 (20%), Positives = 193/469 (41%), Gaps = 21/469 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 +T + + I ++ + IDSRS+ FFA+ DGH++I A Sbjct: 6 YTIRRISEIIHARPSVTNESLIISRLVIDSRSMIDPENSLFFALS-AKRDGHEYIPDAYA 64 Query: 63 KGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 G V++ + VDDVL AL +LAV R + ++AITGS G Sbjct: 65 HGIRNFVISRTEFLADQKAGDYADANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNG 124 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L L++ S+N+ IGVPL++ + + IFE G+S E+ L Sbjct: 125 KTIVKEWLYQLLAADFNIVRSPRSFNSQIGVPLSVWDLTEEHTLAIFEAGISKGEEMDAL 184 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P + ++T + AH F + + + + Y + + + K Sbjct: 185 AAIIYPTVGILTNVGEAHAEGF-----SSQKEKLLEKLKLFKEADVFIYSPEYTQGIPKK 239 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 T +S+ +++AD Q+ + +++++ +G+ +E + +N ++ Sbjct: 240 DLPGN--TKFSWSLTESADLQISFIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGII 297 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + + A S G R ++ID+SY+A+ +S+ A+ Sbjct: 298 CWATLLSMGYSPED---ADSRLEKLNRVGMRLELKHGINQCSVIDDSYSADISSLAIALD 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+ + H + +L D+ E G + + ++A +L I+ + G ++ A Sbjct: 355 FLNLQNQHPKK--TLILSDLYETGRKDEELYTEIAALLKQKQINRLIGVGPNISASASQF 412 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + + + +++K + F R+ L+ ++ Sbjct: 413 K--LESSFYSSTQDFIDQFPAIHFNDETILLKGARRFEFERISKLITQK 459 >gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 495 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 93/472 (19%), Positives = 174/472 (36%), Gaps = 47/472 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + G+S D+R + P F A+ G +DGHD++ A +KGA +V+ + AS Sbjct: 28 PDDTPLAGVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRPVEASG--- 84 Query: 82 SIPVFGVDDVLGALNKLAV-AARLRS--KATIIAITGSVGKTTTKEMLTIA-LSSIKKTY 137 P+ V D AL LA R R ++ +TG+ GKTTT+E+L + ++ + Sbjct: 85 --PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSREGRRPH 142 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++NN IGVP TL + E+G+ G++ +L+ ++ ++++T++ HL Sbjct: 143 TNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMEYLSSVLVSDVSIVTSVGEGHL 202 Query: 198 SNFSGIEEIASA-----KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 IE + G L + + + + G Sbjct: 203 ETLGSIEGVWKEKSNLLNWVRPGGGIVLPLDLLFRYPASPVFRERQRRFFFVALDPDPGD 262 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 S A + + + + + + + + ++ + L A Sbjct: 263 SARASRSVPEGSTILSGTLRKEEGGTWILSGTTGPESFSWSMPSPSSILAMDALLALAAG 322 Query: 313 AIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +S+ + K + L+ + YN+NP S++ A +++ Sbjct: 323 NALGVSLSEGAKHLEKFAPLPGRMQEKRTPEGALLLLDHYNSNPLSLQGAFQWCTEVWKK 382 Query: 367 -------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 G G+ +AVLGDM E+GE S H + + S ++ G ++ Sbjct: 383 EASLAGGGPGKLLAVLGDMLELGEDSSRLHRKAGLIAAETPFSAIFYKGDFFQDFREGYL 442 Query: 420 RSIHVHYSETMDGLFLF------------IQSSLVDGDVVVVKSSNSCGFYR 459 + +L GDVV+VK S + Sbjct: 443 SGKG--------EAARLTRLSGPPYSGQGVFPALRRGDVVLVKGSRGMHLEQ 486 >gi|187479354|ref|YP_787379.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella avium 197N] gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bordetella avium 197N] Length = 939 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 118/440 (26%), Positives = 192/440 (43%), Gaps = 21/440 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+S D+RS+A E F AI G ++DGH ++ A + + S+P Sbjct: 500 VAGVSTDTRSVAADEIFVAISGENFDGHRYLAQAQ----AAGACAAVVAHRVSDSSLPQL 555 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143 + + AL +LA A R R +IA+TGS GKTTTKEM++ A G++ Sbjct: 556 VLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNF 615 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IG+PLTL R+ + ELGM+H GEI +L + + +A++ H G+ Sbjct: 616 NNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGV 675 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A + L + G DD + + G + + FG D +K Sbjct: 676 EAVARENGAVLSALPEDGVAVYPGDDVYTPIWDE---LAGARRVLRFGLQPGLDVYAQKI 732 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + +V ++V G H +N L + A + +A++AL F Sbjct: 733 RPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAV 792 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GR + LID++YNANP S++ AI VL+Q+ G R+ VLGDM E+G+ Sbjct: 793 KGR---MQRKETSNGTILIDDTYNANPDSVRVAIEVLAQLP----GPRVLVLGDMGEVGD 845 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H ++ I + G A H ++D + ++ Sbjct: 846 EGPAMHREVGGYARDQGIDAMVTLGDASRAAAAEFGAGAHA--CASVDEVLAALRGM-NP 902 Query: 444 GDVVVVKSSNSCGFYRLINL 463 V++K S R++ Sbjct: 903 FS-VLIKGSRFMRMERVVTA 921 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 79/447 (17%), Positives = 156/447 (34%), Gaps = 36/447 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR ++P + F A +G DG +I A+ GA +V+ ++D + V V + Sbjct: 33 DSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDALTQSVVADSRVLPVAGLR 92 Query: 93 GALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN----- 145 G L +LA + T++A+TG+ GKT+ + L AL+ + K IG+ Sbjct: 93 GMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGTLGGLLPDG 152 Query: 146 ----------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + L D + S +G + VR A T + Sbjct: 153 VSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAGYTNLTRD 212 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E+ A + +N DD+ L AK Sbjct: 213 HLDYHGTMEQY-EAAKALLFNWPGLQAAVINADDAAGRRLLAKLPVGLASAYA--IDHAE 269 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD + + + + +VV +G+H N+L+ G++ L + + Sbjct: 270 ADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGWPLAAVAR 329 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++ P +GR + + ++ + Y P +++ A+ L ++ G + + Sbjct: 330 EVAAAAPVDGRLQAVAPVGSAQGPLVVVD-YAHTPDALERALLALRPVAQARNGALVCLF 388 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETM---- 430 G G+ ++ + + +S + + A+ + + Sbjct: 389 G---CGGDRDPGKRPEMGRIAGEL-ADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLALRA 444 Query: 431 --DGLFLFIQSSLV--DGDVVVV--KS 451 D + + DVV++ K Sbjct: 445 ESDRALAILHAIWDSWPEDVVLLAGKG 471 >gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp. novicida GA99-3549] gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549] Length = 453 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 108/472 (22%), Positives = 204/472 (43%), Gaps = 26/472 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + L +G + ++I+S + F AI + DGH+FI A Sbjct: 1 MIK--SLKQLAIQSGLEYLG--EDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + A ++V+ L IP + + L LA R II++TGS GKT Sbjct: 56 IANRAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM+ L K + N +GVP+T+ P DVDF + E G + GEI+ Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P+IA+IT + HL N ++ + K E+ + L + G +N DD Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I + + AD + ++ S +++++ + + IG H N ++ + Sbjct: 230 CKKISCSMT---NPKADILVLDYRVTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAI 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V + + ++ +GR + + TLID++YNA+ +++AAI L Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKL---TLIDDTYNASAGAVQAAIEDL 343 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419 ++ +G++I + M E+G+ ++++H + + L N+ V+L G +++ A Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399 Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467 + + Y E+ D L + L + VK + S ++ + + Sbjct: 400 PTQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451 >gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL S4-378] Length = 394 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 183/392 (46%), Gaps = 13/392 (3%) Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 PV V++ L AL +LA + K +IAITGS GKTTTK+++ + + K Sbjct: 11 PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKV 70 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH Sbjct: 71 HYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAH 130 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + EEIA AK EI GL +G + ++++ + G +FGKS A Sbjct: 131 IEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGDFRQLTFGKSDAA 185 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + +E + + +E+ IG H N + + + + + A Sbjct: 186 EIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSA 244 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L R + +++++YN++P ++K + + G+ + VL Sbjct: 245 LKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGK-PKYLVLA 300 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGL 433 DM E+G+LS H + AEVL I ++L G + A +A V + +T + L Sbjct: 301 DMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFDTKESL 360 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + S + + ++VK S G ++ L+ Sbjct: 361 ETALLSEINGNEWILVKGSYGMGLKDVVENLI 392 >gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus erythropolis PR4] gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus erythropolis PR4] Length = 519 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 121/506 (23%), Positives = 192/506 (37%), Gaps = 42/506 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ T + + + G P V G + DSR P F A+ G DGHD Sbjct: 1 MIPM-TLSRIAEIVGGTLHDVDDPSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAE 59 Query: 59 HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVD-D-----VLGALNKLAVA 101 AV G +VV V + G ++ + D D VL AL LA A Sbjct: 60 AAVAAGAVAVLAARPVGVPAIVV--PSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARA 117 Query: 102 ARLRS---------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152 T++ +TGS GKT+TK+++ L + A GS+NN +G+P T Sbjct: 118 VVDELAAEGSASGGGLTLVGVTGSAGKTSTKDLIAALLRERGEVVAPPGSFNNELGLPWT 177 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + R F + E+ +G + LT + P I V+ + AHL F E IA AK E Sbjct: 178 VLRADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGE 237 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E L + + + A + I G+S++ D + +Q+ Sbjct: 238 LVEALPSAADG-GVAVLNADDRMVAAMASRTKARIVFVGQSEDCDVRATD-VVVDDQARA 295 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 L + L + A A + K +R Sbjct: 296 SFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLEGTKAASARRMEV 355 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQSFH 389 T++++SYNANP SM+AA+ L ++ H R AVLG+M E+G S H Sbjct: 356 TERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEH 415 Query: 390 IDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVD 443 + + ++S + + G A+ +++ L Sbjct: 416 DAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEP 475 Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469 GD+V+VK+S S + + +L P Sbjct: 476 GDLVLVKASKSVELWTVAEAILAATP 501 >gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276] gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276s] Length = 450 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA2] gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL044PA1] gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA3] gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp. P08] Length = 485 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 116/483 (24%), Positives = 185/483 (38%), Gaps = 33/483 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L L Q ++ + Q + + ID+R + P + A+ G DGHDF A Sbjct: 1 MRVL-DIATLAQWVEAAPVDDSAQVGPD-VVIDTRKVTPGALYIALPGARVDGHDFTQAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116 GA V+ A +P VDD L++LA R R IA+TGS Sbjct: 59 QDAGAAAVLTTRSTDA-----QVPHLIVDDGRAGLSRLARHVVATERER-GMLTIALTGS 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK+ML L + T A +GS+NN IG PLT R D F + E+G LG I Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGAPLTACRSNEDTSFLVSEMGARGLGHIS 172 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +LT +V P +A++ + AHL F E IA AK EI L G LN D+ + Sbjct: 173 WLTSIVPPDVAMVLNVGIAHLGEFGSREVIAQAKGEIVGALAPDGWAVLNAADNLIAGMA 232 Query: 237 AKSHALGIKTIYSFGKSK-------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 +++H + A+ + V Sbjct: 233 SRTHGHIAWFSPDADHRRPDAEIEAWAESIHADDLDRHSFTLAARYGGTTWRSPVSLTTM 292 Query: 290 YHMAQNMLMTLGIVSILTADVDT-------AIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ ++ A ++ + R + L+ Sbjct: 293 GAHQVANAVAATAAALAALAMNDGTDEQTVIQIAGALSNAVSRSAMRMQLRERADGLVLV 352 Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ YNANP SM A+++ + + + + R +AVLGDM E+G S + + + Sbjct: 353 EDCYNANPDSMAASLAAMGHVLAARRARDPQTRGVAVLGDMLELGADSARLNAESGRRAA 412 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457 + G ++ D T++ + DVV++K+S Sbjct: 413 QAGFDVIIAVGDEAESIADGAQTEGAHVIVATVEEAARSL--GWTSHDVVLLKASRGLAL 470 Query: 458 YRL 460 R+ Sbjct: 471 ERV 473 >gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas fimi ATCC 484] gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas fimi ATCC 484] Length = 485 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 136/470 (28%), Positives = 211/470 (44%), Gaps = 23/470 (4%) Query: 16 GHSIGIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 G + P +G + DSR + P F A+ G H DGHD+ AV GA LV+ Sbjct: 14 GGVLRAEPDVDPHGLVVAGAVVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVL 73 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----------SKATIIAITGSVGK 119 ++ + G L V D V AL LA +R ++ ITGSVGK Sbjct: 74 GARELTGADGRLLPVVVVPD-VERALGDLAREVLVRLRAASLEPGGPGLRVVGITGSVGK 132 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L S T A + S+NN IG+PLT+ R F + E+G S G + +LT Sbjct: 133 TTTKDLLAQLCGSAGPTVAPVRSFNNEIGLPLTVLRADESTRFLVLEMGASGPGHLTYLT 192 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + P +AV+ + AHL F GIE +A+AK+EI +GL G LN DD ++A + Sbjct: 193 DIAPPDVAVVLVVGHAHLGGFGGIEAVATAKSEIVQGLLPDGVAVLNADDPRVLAMRALA 252 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + S G A + + + +E + S V Sbjct: 253 PGDVVTFGASTGAQVRAHDVVVD-RSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNAL 311 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + A+ + R T+ID+SYNANP SM+AA+ Sbjct: 312 AAAATGLAVGLTLDEVAVGLGAADALSPHRMHVVERPDGVTVIDDSYNANPDSMRAALKA 371 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 L+ ++ + R +AVLG+M E+G+ ++ H + ++ N+ + G A++D Sbjct: 372 LAVLAG-RDRRSVAVLGEMLELGDEAREAHDAIGRLVVRLNVGLTVVVGEGARAIRDGAN 430 Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V ++ ++ F+ L GDVV+VKSS G ++L +LL+ Sbjct: 431 HEGSWGDEVVLADDLETAARFLDEELRPGDVVLVKSSYGAGLWQLGDLLV 480 >gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565] gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565] Length = 852 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 99/489 (20%), Positives = 187/489 (38%), Gaps = 38/489 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 + Q+I +G + ++ + DSRS++ + FFA+ G +I +G Sbjct: 5 IESIAQSIGARRVGEY-EVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63 Query: 65 AGLVVVNTDMVASIGSLSIPV----------------------------FGVDDVLGALN 96 V++ + + + + + V + L AL Sbjct: 64 VRNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKALQ 123 Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 KLA R R +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ Sbjct: 124 KLAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQL 183 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ Sbjct: 184 SEEAELGIFEAGISEMGEMGALKRMIKPSIGILTNIGGAHQENFFSLQEKCMEKLTLFKD 243 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + L + A + T S+ + +++ V Sbjct: 244 CDVV-------IYDGDNELISNCVAKSMLTAREIAWSRTDIERPLYISCVTKKEDHTVIA 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 I + ++ L ++ + A + E R + Sbjct: 297 YRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGK 356 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 LI++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ Sbjct: 357 NNCLLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 416 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 I + G + + I ++ + L + +V+++K S Sbjct: 417 QSRGIDKLIGVGPEISSCAARFDDGIERYFFPNTEALLKSELLKSLHSEVILIKGSRVFN 476 Query: 457 FYRLINLLL 465 F + L Sbjct: 477 FDLVSEALE 485 >gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A] Length = 846 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 102/484 (21%), Positives = 190/484 (39%), Gaps = 34/484 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++I +G + ++ + DSRS++ + FFA+ G +I +G Sbjct: 5 IESIAKSIGARRVGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63 Query: 65 AG-LVVVNTDMVASIGSL---------------------SIPVFGVDDVLGALNKLAVAA 102 V+ D ++ V + L AL KLA Sbjct: 64 VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + K +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ + + Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ + Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + L + A + T S+ + + +++ V Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEM 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 I + ++ L ++ + A + E R + LI Sbjct: 297 DNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ I+ Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461 + G + + + ++ + L I SL +V++VK S F + Sbjct: 417 KLIGVGQEISSCSARFNDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475 Query: 462 NLLL 465 L Sbjct: 476 EALE 479 >gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-064] Length = 392 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 108/392 (27%), Positives = 180/392 (45%), Gaps = 13/392 (3%) Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + PV V+D L AL +LA + K +IAITGS GKTTTK+++ + + K Sbjct: 9 PNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKV 68 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P IA+IT I AH Sbjct: 69 HYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAH 128 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 + EEIA AK EI G E L + G +FGKS+ A Sbjct: 129 IEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAA 183 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + +E + + +E+ IG H N + + + + + A Sbjct: 184 EIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSA 242 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L R + +++++YN++P ++K + + G+ + VL Sbjct: 243 LKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLA 298 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRSIHVHYSETMDGL 433 DM E+G+LS H + AEVL I ++L G + A + +A VH+ T + L Sbjct: 299 DMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESL 358 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + S + + ++VK S G ++ L+ Sbjct: 359 ETALLSEMNGNEWILVKGSYGMGLKDVVENLI 390 >gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9768] gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/11074] gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9301] Length = 450 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADQFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein [Mariprofundus ferrooxydans PV-1] gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein [Mariprofundus ferrooxydans PV-1] Length = 452 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 125/474 (26%), Positives = 200/474 (42%), Gaps = 50/474 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF-------- 56 + D+ A G + +P+ V+ I+ D+R + F A++GPH+DGH F Sbjct: 3 LSGADIQCATGGEWLHGMPEW-VSEIATDTRGFKSGQCFLALRGPHFDGHRFAAPIADAA 61 Query: 57 ---ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIA 112 I A + SL +P V+D L AL +A A R++ K T++A Sbjct: 62 CALIGDA------------RGMRYWESLPVPQLQVEDTLRALGDIAHAWRMQLKQTTVVA 109 Query: 113 ITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 I+GS GKT+ + +L S++ A + NN IGVP TL +P D + E G+S Sbjct: 110 ISGSFGKTSLRSLLQHGFSALGLHVSATTANLNNLIGVPKTLLAVPADATLALIECGISE 169 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GE+ L+ +V+P +AV+T I AH G+ + KA +F L Sbjct: 170 VGEMERLSAIVQPDVAVLTGITNAHGEGLGGLAGVVEEKAALFSHLNTGAWCA------- 222 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + A + + + D + + + + Q + ++ H Sbjct: 223 ----LGEGVADQLGRHHISQPADLLDVEQSELSWRLDGQCLHFQRGDEQSQIELSLPARH 278 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 A NM + I+ L + A ++ + R + G ++D+SYNANP Sbjct: 279 WATNMHLAACIIMRLMPEARLNDVAQALASW-QAPAGRMQVRTGSGGCKVLDDSYNANPV 337 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 SM+AAI L + G RIAVLGDM E+GE S H L + I ++L G + Sbjct: 338 SMQAAIDTLVAMP----GCRIAVLGDMAELGEASLGAHTGL----DVSGIDKLYLVGPKM 389 Query: 412 LALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464 AL S + + + S V+VK S S ++N+L Sbjct: 390 HALAAG---SGTARWYPDHRAAAASLSRESFGPDATVLVKGSRSMALETVVNVL 440 >gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM 22836] Length = 823 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 99/467 (21%), Positives = 191/467 (40%), Gaps = 17/467 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 ++ H + + I + + ++ + DSR + + FFA+K + DGH +I + Sbjct: 3 YSIHQVAKIIDAMPT-DLNETAISILLTDSRQVFFPDETLFFALKTKNNDGHRYISELYE 61 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G VV+ V L AL +LA R + +I ITGS GKT Sbjct: 62 LGVRNFVVSDLQPEWEEYEDANFLVVVHTLFALQRLAAYHRNQFNVPVIGITGSNGKTVV 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L SYN+ IGVPL++ +M G+FE G+S E+ L ++ Sbjct: 122 KEWLYQVLHHDFNITHSPRSYNSQIGVPLSVWQMNSHTQLGVFEAGVSQPEEMAKLEAII 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P I + T I AH F +++ K E+F + I ++ + + Sbjct: 182 NPTIGIFTNIGQAHQEGFKSMKQKCLEKLELFINCD---VIICEEENELVDECMEIACLS 238 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + +S S + + K ++ + + + G + + +N + L Sbjct: 239 HKRLTWSRKGSNKSPLHIMKVEKLGNSTTIHYSILGMASQFTIPFADNAAIENAIQVLAT 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + ++ P R + N LI+++YN++ S+ A+ L+Q Sbjct: 299 AIYLHLPLPDINQRMADLEPVAMRLDVRQGKNN---TILINDTYNSDINSLGIALDFLAQ 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 + + R++ ++ D+ + G + + + + ++ I + G + KD ++ Sbjct: 356 RATDSQKRKVLIISDIPQSGLIPKELYYLASNLVLNKKIDVLIGIGKEISTYKDLF-KND 414 Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466 +H+ T + FI S++ +++K + S F + N LLE Sbjct: 415 EMHFFNTTND---FIHSNIWSDFHDMFILLKGARSFSFESI-NKLLE 457 >gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sinus F0268] gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sinus F0268] Length = 434 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 197/445 (44%), Gaps = 31/445 (6%) Query: 27 VNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIP 84 V+ I +DSR F IKG DGH FI A++ GA + D + Sbjct: 12 VDKIILDSREDCTKG-LFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSELSKEYPEVR 70 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+ + AL L AR +I +TGSVGKTTT+ M+ ALS K + G+ N Sbjct: 71 FISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETKGNAN 130 Query: 145 NHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 + +G+P+TL M + + + ELG+S GE+ + + IAV T I AHL N Sbjct: 131 SQLGLPITLFSMAKENKEISVIELGISIPGEMHRIGEIASCDIAVFTNIGSAHLENLKTK 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E K I EG +K +++L D+ L + Sbjct: 191 ENTCFEKMHILEGNQKEVSLYLPKKDAILGTLTEEKIRAMGFL----------------- 233 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + K E+ G HM N + + I L ++ L F Sbjct: 234 ----GEKKLNLFFYEKKEEIPLSVPGEHMEDNASVAMAIGLSLGLHKQKLLQGLLEFQGL 289 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 +GRG + +ID+SYNA+P SMKA++ VL+ S G R+IAVLGDM E+G+ Sbjct: 290 KGRGG---RLSTEDGIMIIDDSYNASPDSMKASLKVLA--SEKGAKRKIAVLGDMNELGD 344 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442 ++H ++ E+L I ++ G ++ A+ + ++ L L ++ + Sbjct: 345 NEIAYHREIGELLKSLPIDALFTLGKKGEEIRKAMGEKLLPGKACFNLEELSLSLEEEIK 404 Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467 GD+++ K+SNS ++I + + Sbjct: 405 PGDLLLFKASNSLSLSKVIQEIRSK 429 >gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22] gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22] Length = 846 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 101/484 (20%), Positives = 190/484 (39%), Gaps = 34/484 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++I +G + ++ + DSRS++ + FFA+ G +I +G Sbjct: 5 IESIAKSIGARRVGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63 Query: 65 AG-LVVVNTDMVASIGSL---------------------SIPVFGVDDVLGALNKLAVAA 102 V+ D ++ V + L AL KLA Sbjct: 64 VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + K +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ + + Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ + Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + L + A + T S+ + + +++ V Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEM 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 I + ++ L ++ + A + E R + LI Sbjct: 297 DNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ ++ Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGVN 416 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461 + G + + + ++ + L I SL +V++VK S F + Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475 Query: 462 NLLL 465 L Sbjct: 476 EALE 479 >gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f] gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f] Length = 846 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 101/484 (20%), Positives = 190/484 (39%), Gaps = 34/484 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++I +G + ++ + DSRS++ + FFA+ G +I +G Sbjct: 5 IESIAKSIGARRVGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63 Query: 65 AG-LVVVNTDMVASIGSL---------------------SIPVFGVDDVLGALNKLAVAA 102 V+ D ++ V + L AL KLA Sbjct: 64 VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + K +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ + + Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ + Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + L + A + T S+ + + +++ V Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEM 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 I + ++ L ++ + A + E R + LI Sbjct: 297 DNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ ++ Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGVN 416 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461 + G + + + ++ + L I SL +V++VK S F + Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475 Query: 462 NLLL 465 L Sbjct: 476 EALE 479 >gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia trachomatis D/UW-3/CX] gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis G/11222] gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-EC] gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-LC] Length = 450 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G++IDSR + P + FFA+ G GH F+ A Q GA VV +D S + + Sbjct: 24 KVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL +I ITGSVGKTTTK LSS+ K + SYN+ Sbjct: 82 LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + +PL++ D DF + E+G+S ++ L ++ P I VIT I H +F + Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLD-KG 200 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E LE+ G + D S+F+ K+ A + ++ + ++ + Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + M I L + + L Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 +I+++YNA+P +M AA+ + P G+ I +LG M E+G S Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 HI A ++ G ++D + + + + + + +++ + G Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427 Query: 445 DVVVVKSSNSCGFYRLI 461 DVV++K S S L+ Sbjct: 428 DVVLLKGSRSLELETLL 444 >gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis 60-3] gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis 60-3] Length = 843 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 103/479 (21%), Positives = 185/479 (38%), Gaps = 18/479 (3%) Query: 1 MNPLW-----TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDG 53 M P++ T ++L+ ++ +V + + I DSR + FFA++ DG Sbjct: 1 MTPIYNTIMSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDG 60 Query: 54 HDFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 H +I + G + + V + L AL ++A R+R +I Sbjct: 61 HKYIPQLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIG 120 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKT KE L LS + SYN+ +GVPL++ M + IFE G+S Sbjct: 121 ITGSNGKTVVKEFLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMP 180 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 E+ L ++RP + ++T I AH NF + + K ++F + D Sbjct: 181 MEMLRLQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVYDADSDEI 237 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + +S K + + VQ +S V Sbjct: 238 QRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHS-GDGTTIITVQHADESSTVTIPFADQAS 296 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 QN L ++ +L L+ F E R Q LI+++YN + S Sbjct: 297 IQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINS 356 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++ A+ Q + + + +L D+ + +L + + + E+++ Y + G + Sbjct: 357 LRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELC 416 Query: 413 ALKDALPRSIHVH--YSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +D RS + ET D L + + ++VK + F R++ L ++ Sbjct: 417 NYQDYFQRSGEGKTAFYETTDQLLADDLLGTITHAE--ILVKGARQFQFERIVQHLAKQ 473 >gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 519 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 60/503 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG----IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + G + V G + DSR++ P F A+ G DGHD Sbjct: 1 MIEL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS------- 106 V V + + +P D AL + S Sbjct: 60 HAE-------AAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAA 112 Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 TI+ ITGS GKT+TK+++ L+ + + A GS+NN +G P Sbjct: 113 LAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D D+ + E+ H G I L + P + V+ + AHL F E IA K+ Sbjct: 173 TVLRATADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKS 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS- 270 E+ + + +G + LN DD + + A ++ + E + Sbjct: 233 ELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVGRAEHTEAGPSDVWAGPVSLDELAR 292 Query: 271 -----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + V G H N L + A V+ + AL+ P Sbjct: 293 PGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPV-- 350 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMC 379 R + + T+ID++YNANP SM+A + L+ I R AVLG+M Sbjct: 351 SRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMA 410 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-------PRSIHVHYSETM 430 E+G+ + + H + + ++S + + G V A+ Sbjct: 411 ELGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDA 470 Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453 + +++ L GDVV+VK+SN Sbjct: 471 EAALELLRAELQPGDVVLVKASN 493 >gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a] gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a] Length = 467 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 190/477 (39%), Gaps = 23/477 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL T ++ A G + V G SR + P F A+ G DGHDF Sbjct: 1 MIPL-TLAEVAVATGGRLDAVADPAAVVGAVAVDSRQVGPGTLFVALVGARSDGHDFAA- 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 V V + L +P V D AL LA R ++AT++A+TGS GK Sbjct: 59 ------AAVAAGAPAVLAARPLGVPAVVVADPSAALAALAAHVRDIARATVVAVTGSAGK 112 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK++L L+ + T A GS+NN IG+PLTL R D F + E+G LG I L Sbjct: 113 TTTKDLLADLLAELGPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGLGHIATLC 172 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP + + + AH+ + G IA+AK E+ E + + + + L A Sbjct: 173 AVARPSVGAVLNVGSAHVGEYTDGRLGIAAAKGELAEAAQDAVILNAD------DPLVAA 226 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + +FG+ AD + + L Q Sbjct: 227 MAPRARGEVITFGEDAAADVRGAGVRVDPLG-HASFDLLAGGERHRVTLGLVGAHQVPNA 285 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + A A ++ + R +++++YNANP SM+AA++ Sbjct: 286 LAAAAVALRLGLSPARTAAALGAARARSRWRMEVTRTAAGVVVVNDAYNANPESMRAALA 345 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + G GR IAVLG M E+G+ + H L + I V G + A Sbjct: 346 TLVDMR--GAGRAIAVLGGMGELGDAADDAHDALGRLAVRLGIDQVIAVGPAARRIHLAA 403 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 + D + + DVV+VK+S S G R+ ++ F + Sbjct: 404 SLEGSWDGESRWVADADEAVATVVALARPDDVVLVKASRSYGLERVAEDVVTRFGVV 460 >gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5] Length = 792 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 98/470 (20%), Positives = 166/470 (35%), Gaps = 54/470 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI------APQEAFFAIKGPHYDGH 54 MN + + G G V + DSRS+ P F A++G ++D H Sbjct: 1 MN--YRLSRIAAICGGKFSGC--DSEVRSVVTDSRSLSCELGCRP--MFVAMRGANHDSH 54 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 DFI +G +V + AS + VD+ + AL +LA R + + T++ IT Sbjct: 55 DFIADMQSRGVRAFLVERGVEASSCTGECGFVQVDNAIEALQRLAAYHRAQFRGTVVGIT 114 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKT KE + L K Y SYN+ +GVPL++ + D + IFE G+S GE Sbjct: 115 GSNGKTVIKEWIAEELPEGMKYYRSPKSYNSQLGVPLSVLMLEGDEELAIFEAGISKPGE 174 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + L ++RP + T+I AH NF +E+ E Sbjct: 175 MERLERIIRPDAVIFTSIGDAHQENFINLEQ------------------------KCDEK 210 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + A I + ++ + + + Sbjct: 211 MILARSASKIIYHSYYEPLGRMVAAHFADRRPVDAASYPEVPESVIGNAASRRN------ 264 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 I+ A D F R LI+++YN + S+ Sbjct: 265 --------AQIVEAFCDAMRYPAPSFAGAPSVAMRLEVKEGINDSILINDAYNLDLNSLA 316 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A+ L ++ VL D+ + G + +A +++ I + G + Sbjct: 317 LALDYLHSVALSRRR--TLVLSDISQSGLSDDELYGRVAGMVARAGIDFLIGIGPRLKRY 374 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + D I V G +++K + F +L++LL Sbjct: 375 AALF--ACDKEFFTATDECVARINRDAVAGRAILLKGARDFRFEKLVHLL 422 >gi|46446265|ref|YP_007630.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Candidatus Protochlamydia amoebophila UWE25] gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila UWE25] Length = 841 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 97/439 (22%), Positives = 169/439 (38%), Gaps = 13/439 (2%) Query: 25 GFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++ I IDSR + + F A+KG DGHDF+ A + GA +V+ I Sbjct: 23 VIIDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWTPPFNLKPI 82 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + V L AL ++A A RL+ II ITG+ GKT K++L LS+ K A GS+ Sbjct: 83 FLLKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVCASPGSF 142 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N+ IGV L+L + D + I E +S E+ L L+RP ++T I HL+ + I Sbjct: 143 NSQIGVALSLLTIQKDQELAIIEAAISKKQEMDILADLIRPDYTILTPIGKKHLATLNDI 202 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + I ++ KTG + L D LK + I S F Sbjct: 203 DTITYETLKLVWATSKTGWVLLPNDIYQQFHLKNNLFSSYIWDRDSKCLPHAIPFSKNSP 262 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 Q + + + ++ + I ++ + Sbjct: 263 FASHYQLTFPDSSRYEQQMTNGYSYFLNLINITSKAAWLSGIKAENIKKIFEYY------ 316 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R + T I+E+ ++P S+ A +P I + G M Sbjct: 317 YPEPSRTEIWKSPIGATFINETSCSDPHSIDRAFKHFEHAAPSQRK--IFIFGGMKGNIS 374 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSETMDGLFLFIQS 439 +Q+++ + + +S ++ H+ L G + + + + ++Q Sbjct: 375 FAQNYYTKIGKTISKAHLRHLLLFGHQPFKTLIDEVKKISPETEILCFKRCEEALNYLQK 434 Query: 440 SLVDGDVVVVKSSNSCGFY 458 +L D++++K F Sbjct: 435 NLQSQDLILIKGDRKIPFE 453 >gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum ATCC 35910] gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum ATCC 35910] Length = 815 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 100/469 (21%), Positives = 184/469 (39%), Gaps = 27/469 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + + IG + I+ DSR I AF AI G FI Sbjct: 1 MN--YTVQHIAEITNAQIIG-DGNLLIKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIE 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ +G +++ +I V++ + L KLA S I ITGS G Sbjct: 58 SAMDRGIKVIISEHHYPEFE---NITWIIVENSVAFLQKLAKYHFENSHLQSIGITGSNG 114 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L L + T S+N+ IG+PL+L ++ GIFE+G+S E+ L Sbjct: 115 KTILKEWLYQCLWNEFPTVKSPKSFNSQIGLPLSLLQINDSHQLGIFEVGISKPHEMEKL 174 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++ P I ++T I AH +NFS EE+ K +F+ E I N D+ + Sbjct: 175 ENIFHPQIGLLTHIGTAHAANFSSEEELIDEKIRLFKNSE---VIIYNGDNDLVDQKIKN 231 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 S++ Y F K S S E + E + + Sbjct: 232 SYSDKKLIAYGFKKENQVF-------IKSNISKDENIIVEYFGEEISFPAHQRDEATLTN 284 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + ++++L K + + + R +I++S+N + S+ + Sbjct: 285 AMALITVLKELNIENKKIVEKINLLKAVEMRLEAIEGNKGNIVINDSFNLDLDSL---KT 341 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L ++ + + ++ VL D+ + ++ + ++AE+++ N V+L G + + Sbjct: 342 ALQFLNEYNKAKKSLVLTDIVGVSTNAKELYEEVAELVNDQNFDSVFLIGNEISKFSELF 401 Query: 419 PRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L + + ++++K + +L ++L Sbjct: 402 KAKTYTFI--DTKELIESKHLTEI--ENQIILLKGARKFEIEKLKDILE 446 >gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] Length = 825 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 101/471 (21%), Positives = 194/471 (41%), Gaps = 16/471 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 M +T + I G V + DSRS+ A + FFAIK DG ++ Sbjct: 1 MT--YTIERITALIGARRYGRANASIVF-LLTDSRSLCFAEETLFFAIKTMSNDGSKYLS 57 Query: 59 HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 ++G VVN ++ + V + L AL +LA R +I ITGS Sbjct: 58 DLYKRGVRNFVVNEVPENYAVLYPNSNFLKVSNTLDALQRLAERHRDEFAIPVIGITGSN 117 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE + LS SYN+ GVPL++ + + G+FE G+S GE+ Sbjct: 118 GKTMVKEWIYQLLSPSLIVTRSPRSYNSQTGVPLSVWLLTNNTQLGVFEAGISEPGEMDS 177 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +++P I ++TTI AH NF+ +EE + K ++ T + L Sbjct: 178 LRDIIQPTIGILTTIGDAHQENFTSLEEKCNEKLKL-------FTDSKLLIYNEDNTLVK 230 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + F S+ + + + + V + I + ++ Sbjct: 231 RCVEQFSFEGQRFSLSRQNEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFIDEASIE 290 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ ++I E R + TLI++SYN++ S+ A+ Sbjct: 291 NSIECLAIGLYLGIDKNAIEERMASLEPVAMRLEVKEGRHDCTLINDSYNSDINSLDIAL 350 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 +S+ E +RI +L D+ + G+ + +++ ++ +++ G + A +D Sbjct: 351 DFMSRRPDAKERQRILILSDIYQTGKPLSQLYSEVSALMKQRSVNQFIGIGPEIYAHQDC 410 Query: 418 LPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + T+ + ++L + ++++K + GF ++ +LL+++ Sbjct: 411 FQQQ-NSSFFLTVQDFIDSGLFTNLRNN-IILLKGARRFGFDKITDLLVKK 459 >gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] Length = 975 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 120/475 (25%), Positives = 190/475 (40%), Gaps = 38/475 (8%) Query: 4 LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59 L + +L I IG V+ I DSR + P F A++G +D HDF+ Sbjct: 496 LCSLGELRDWIGPEARLIGEA-DVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA 554 Query: 60 -------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 ++G +P D L A LA R + +IA Sbjct: 555 AAGARALLAEQGVAAC-------------GLPGIEAPDTLRAFGLLARGWRRQQTLPLIA 601 Query: 113 ITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +TGS GKTT +ML A + A G++NN +G+PLTL R+ + ELGM Sbjct: 602 VTGSNGKTTVTQMLASILAAWQGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGM 661 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H GEI +L L P +A++ H +E +A + L +TG DD Sbjct: 662 NHPGEIAWLASLAEPTVALVNNAQREHQEFMHSVEAVAHENGSVLAALPQTGVAVFPADD 721 Query: 230 SFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHG 287 + + A++ + G + ++ + +++ EV Sbjct: 722 AQTAIWVAQAAGRRVLRFALREGAEAGVEAEVSGHAFYRQGQLRLQLHTPTGHAEVGLQL 781 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESY 346 +G H A+N L A +D + L F P GR R + LID+SY Sbjct: 782 LGRHNARNALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADDRTLLLIDDSY 841 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANP S++AAI VL+++ GR + +LGDM E+G+ +FH ++ + ++ +W Sbjct: 842 NANPDSVRAAIDVLAELP----GRSLLLLGDMGEVGDNGPAFHAEVGTYAAQRGVAALWA 897 Query: 407 SG--FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 G + + L + L + D V+VK S R Sbjct: 898 CGAMTAQAVAAAQAAGLAAAKHQPDLMDFTLDAAA-LREFDTVLVKGSRFMRMER 951 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 143/474 (30%), Gaps = 45/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LQA++ + + DSRS+ P E F A G D F+ A+ GA Sbjct: 8 VDTVLQALRALGVAADATW-----TADSRSLQPGEVFVAWPGAARDPRQFVAQALAAGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 +V + G + VD + LA A ++A+TG+ GKT+ Sbjct: 63 AALVEAEGAQYFGFTDPRILAVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCAL 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELG 168 AL++ + IG+ G P L + + Sbjct: 123 WAAQALNAAGQRCGVIGTLGA--GWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIE 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S +G H A T + HL + A AK +F L+ D Sbjct: 181 ASSIGLDEHRLAGCAIHAAAFTNLTQDHLDYHGDMAAYARAKRALFV-WPGLQHAVLDID 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + + AD+ Q S + + + + Sbjct: 240 DPYAASVLLADCRSRGQQVQTTALIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVL 299 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G +N+ L + ++L + R + G + + Y Sbjct: 300 GAFNLRNL---LVVAALLHTTGLDDAAIAAALRTVRAVPGRMQMLGGIGAPLAVID-YAH 355 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ A+ L ++ +G+ V G G + L + + V L+ Sbjct: 356 TPDALYKALQALRPVTAKRKGKLWCVFGA----GGDRDARKRPLMAQAAEAHADRVVLTS 411 Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G + L L + E S DVV++ K Sbjct: 412 DNPRSEAPGAILQDLLAGLQQPAQALLIEDRAAAIAQTLSHAAVHDVVLIAGKG 465 >gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 472 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 115/478 (24%), Positives = 196/478 (41%), Gaps = 30/478 (6%) Query: 6 TFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T ++ + G + + DSR P F + G DGHDF AV++ Sbjct: 4 TINEAAVCLGLPGTLP-DAENTVLTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQ 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + +++PV V D + AL +LA R R+KA ++A+TG+ GKTT K Sbjct: 63 GAAAVLA----AGPLPGINVPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 E+L LS KT ++NN IG+P + D F I E G+S G++ L ++R Sbjct: 119 EVLAQVLSLGGKTARNAMNHNNQIGMPRAVLGTDGDEKFWIMEAGISQQGDMDDLGSVLR 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+ H + +A KA + + L K G + D L ++ A Sbjct: 179 PDIAVVLNAGTGHTEGLGE-KGVAWHKARLLKYLAKGGKGLVCADYPD---LVREARATE 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302 + G ++A+F+ + + + + G + + G Sbjct: 235 TDICFFSGSGRDAEFRAVYAGAAPQGAAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGAE 294 Query: 303 ----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 V+ + + ++A+ + + + G + LID++YNANP SM + Sbjct: 295 NVAAVAAVAHMLGLDLQAIRQGLAQARMPAQRFNQVQAGSWLLIDDTYNANPLSMGRMLD 354 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ + +AVLG M E+G + H L L+ N S + G H ++ L Sbjct: 355 AAAERAA--GRPFVAVLGAMLELGSQAAMEHEALGRRLAGLNPSAIVWKGLHAEDVRKGL 412 Query: 419 PRSIH----------VHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLINLL 464 + + + +T L + + G VV+ K S S L+ +L Sbjct: 413 TLAGYAGPWQVVTDAGEFMKTWQTLQDYGLENKAAKSGGVVLFKGSRSNRLETLVAVL 470 >gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 497 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 114/493 (23%), Positives = 188/493 (38%), Gaps = 37/493 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQ------------GFVNGISIDSRSIAPQEAFFAIKGPHYDG 53 T ++ G + V + DSR F AI G DG Sbjct: 5 TLREIAAMTGGVLLAPGGDEAGGSLQAHDGVTRVTDVVTDSRQAEEGSLFVAIVGERTDG 64 Query: 54 HDFILHAVQKGAGLVVVNTDMV-------ASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 H + A GA +V+ A S+P+ V D + AL LA + + Sbjct: 65 HRHVPQAAAAGARAALVSNVEAVRAAMAEAGRDPESLPLVIVPDTVAALGGLARSHLAQL 124 Query: 107 K---------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 + ++IA+TGSVGKTTTK++ L++ T A + S+NN IG+PLT+ R Sbjct: 125 REQASSRGETLSVIAMTGSVGKTTTKDLTRQILAAQAPTVAPVASFNNEIGLPLTVLRAD 184 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + E+G S G I +LT + A + I AH+ F ++ +A AK+EI GL Sbjct: 185 HTTRYLVLEMGASGSGHIAYLTSIAPLDAAAVLMIGHAHMGGFGSVDGVARAKSEIVTGL 244 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 TG LN DD ++ + + S + + + + Sbjct: 245 LPTGVAVLNLDDPRSAAMRELAPGRVLTFSASGDPRADLRASAVELDEQAHAVLDLHLPG 304 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + + G H N L G+ D ++AL+ G Sbjct: 305 ARPERLRLGLPGRHNVTNALAAAGLALAAGLDPSQVLQALA---GAGLESPHRMDVRECG 361 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 +ID+SYNAN S ++ + + G+ RR+ ++ +M E+G S + H E+ + Sbjct: 362 GVLVIDDSYNANIDS--MTAALEALPALAGQRRRVVIISEMLELGSASHADHTRTGELAA 419 Query: 398 LYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLFI---QSSLVDGDVVVVKSSN 453 + A + A +H + S L D V++K S+ Sbjct: 420 AAGAQVLVTIGQGAAPAAQAARAAGVHTIELPDAQAAIELLDGGHSPLRPADAVLIKGSH 479 Query: 454 SCGFYRLINLLLE 466 G +R+ + L Sbjct: 480 GSGAWRVADHLTA 492 >gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp. avium ATCC 25291] Length = 519 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 60/503 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG----IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + G + V G + DSR++ P F A+ G DGHD Sbjct: 1 MIDL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS------- 106 V V + + +P D AL + S Sbjct: 60 HAE-------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAA 112 Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 TI+ ITGS GKT+TK+++ L+ + + A GS+NN +G P Sbjct: 113 LAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D D+ + E+ H G I L + P + V+ + AHL F E IA K+ Sbjct: 173 TVLRATADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKS 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS- 270 E+ + + +G + LN DD + + A ++ + E + Sbjct: 233 ELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEAGPSDVWAGPVSLDELAR 292 Query: 271 -----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + V G H N L + A V+ + AL+ P Sbjct: 293 PGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPV-- 350 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMC 379 R + + T+ID++YNANP SM+A + L+ I R AVLG+M Sbjct: 351 SRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMA 410 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-------PRSIHVHYSETM 430 E+G+ + + H + + ++S + + G V A+ Sbjct: 411 ELGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDA 470 Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453 + +++ L GDVV+VK+SN Sbjct: 471 EAALELLRAELQPGDVVLVKASN 493 >gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Prevotella ruminicola 23] gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Prevotella ruminicola 23] Length = 792 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 100/439 (22%), Positives = 173/439 (39%), Gaps = 17/439 (3%) Query: 32 IDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88 DSRS+ + FFA+K DGH +I +G VV V Sbjct: 3 TDSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVVEQVPEAYETLYPQANFLRV 62 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 L AL +LA R I+ ITGS GKT KE L L ++ SYN+ IG Sbjct: 63 PHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRIVRSPRSYNSQIG 122 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 VPL++ + + GIFE G+S GE+ L +++P I V+T++ AH NF +EE Sbjct: 123 VPLSVWLLNEQTEVGIFEAGISQPGEMMALRDIIQPTIGVLTSLGAAHQENFRSMEEKCM 182 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K E+ T + D+ + + G K +S D Q + + E Sbjct: 183 EKLELMH---DTEAMVYCSDNDIVSRCIRRMNYKGEKISWS-----TCDQQAAFYVKSVE 234 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S + + + I ++ + + L + P Sbjct: 235 NSHITYIWKEEENCFDIPFIDEASIEDCITCAAVALRLGLTPGDLADRMPKLEPV---AM 291 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 R Q LI++SYN++ S+ A+ ++ +R +L DM + G + Sbjct: 292 RLEVKEGQRGCILINDSYNSDINSLDIALDFMN--RREELKKRTLILSDMFQSGLSPEKL 349 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + ++E+ I+ G + A D + + +++ L + L ++++ Sbjct: 350 YAQVSELAVKRGITKFIGIGAQLTAQADKIQIADKQFFADVNHFLGSDAFTGLR-NEMIL 408 Query: 449 VKSSNSCGFYRLINLLLEE 467 +K + GF ++ L ++ Sbjct: 409 LKGARPFGFDQITEQLEQK 427 >gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium avium 104] gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium avium 104] Length = 533 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 60/503 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIG----IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + G + V G + DSR++ P F A+ G DGHD Sbjct: 1 MIDL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS------- 106 V V + + +P D AL + S Sbjct: 60 HAE-------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAA 112 Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 TI+ ITGS GKT+TK+++ L+ + + A GS+NN +G P Sbjct: 113 LAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D D+ + E+ H G I L + P + V+ + AHL F E IA K+ Sbjct: 173 TVLRATADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKS 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS- 270 E+ + + +G + LN DD + + A ++ + E + Sbjct: 233 ELPQSVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEAGPSDVWAGPVSLDELAR 292 Query: 271 -----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + + V G H N L + A V+ + AL+ P Sbjct: 293 PGFTLYHSHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPV-- 350 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMC 379 R + + T+ID++YNANP SM+A + L+ I R AVLG+M Sbjct: 351 SRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMA 410 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-------PRSIHVHYSETM 430 E+G+ + + H + + ++S + + G V A+ Sbjct: 411 ELGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDA 470 Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453 + +++ L GDVV+VK+SN Sbjct: 471 EAALELLRAELQPGDVVLVKASN 493 >gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein [UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase ( MurF); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (MurE) ] [Thiomonas sp. 3As] Length = 975 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 121/475 (25%), Positives = 192/475 (40%), Gaps = 38/475 (8%) Query: 4 LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59 L + +L I IG + V+ I DSR + P F A++G +D HDF+ Sbjct: 496 LCSLGELRDWIGPEASLIGEA-EVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA 554 Query: 60 -------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 ++G G +P D L AL LA R + +IA Sbjct: 555 AAGARALLAEQGVGAC-------------GLPGIEAPDTLRALGLLARGWRRQQTLPLIA 601 Query: 113 ITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +TGS GKTT +ML A + A G++NN +G+PLTL R+ + ELGM Sbjct: 602 VTGSNGKTTVTQMLASILAAWQGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGM 661 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +H GEI +L L P +A++ H +E +A + L +TG D Sbjct: 662 NHPGEIAWLASLAEPTVALVNNAQREHQEFMHSVEAVAHENGAVLAALPQTGVAVFPAAD 721 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHG 287 + + A++ + +++ Q +++ EV Sbjct: 722 AQAAIWVAQAAGRRVLRFALREEAEADVEAEVSGHAFYRQGQLHVQLHTPAGHAEVGLQL 781 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESY 346 +G H A+N L A +D + L F P GR R ++ LID+SY Sbjct: 782 LGRHNARNALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADEHTLLLIDDSY 841 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANP S++AAI VL+++ GR + +LGDM E+G+ +FH ++ + ++ +W Sbjct: 842 NANPDSVRAAIDVLTELP----GRSLLLLGDMGEVGDNGPAFHAEVGTYAAQRGVAALWA 897 Query: 407 SG--FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 G + + L + L + D V+VK S R Sbjct: 898 CGAMTAQAVAAAHAAGLAAAKHQPDLMDFTLEAAA-LREFDTVLVKGSRFMRMER 951 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 79/450 (17%), Positives = 134/450 (29%), Gaps = 40/450 (8%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 S DSRS+ P E F A G D F+ A+ GA +V + V G + VD Sbjct: 27 SADSRSLQPGEVFVAWPGAARDPRQFVTQALAAGAAAALVEAEGVQHFGFTDPRILAVDG 86 Query: 91 VLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + LA A ++A+TG+ GKT+ AL++ + IG+ G Sbjct: 87 LKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLGA--G 144 Query: 149 VPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTI 192 P L + + S +G H A T + Sbjct: 145 WPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFTNL 204 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL + A AK +F L+ DD + + + + Sbjct: 205 TQDHLDYHGDMAAYARAKRALFV-WPGLQHAVLDIDDPYAASVLLADCRSRGLQVQTTAL 263 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 D+ Q S + + + +G +N+ L + ++L Sbjct: 264 IAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNL---LVVAALLHTTGLD 320 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 + R + G + + Y P ++ A+ L ++ +G+ Sbjct: 321 DAAIAAALRTVRAVPGRMQMLGGIGAPLAVID-YAHTPDALDKALQALRPVTAKRKGKLW 379 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDALPRSIH 423 V G G + L + V L+ G + L L + Sbjct: 380 CVFGA----GGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQ 435 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 E S DVV++ K Sbjct: 436 ALLIEDRAAAIAQTLSHAAVHDVVLIAGKG 465 >gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I] gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I] Length = 835 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 13/471 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61 + T ++L+ ++ +V + + I DSR + FFA++ DGH +I Sbjct: 1 MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY 60 Query: 62 QKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G + + V + L AL ++A R+R +I ITGS GKT Sbjct: 61 EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L LS + SYN+ +GVPL++ M + IFE G+S E+ L Sbjct: 121 VVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLRLQR 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP + ++T I AH NF + + K ++F + D + Sbjct: 181 IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVYDADSDEIQRGIDNLG 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K + + Q +S V QN L Sbjct: 238 LSDKAIGWSLTPGKAYYHVSYSHSGDCT-TTITAQHADESSTVTIPFADQASIQNATHCL 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ +L L+ F E R Q LI+++YN + S++ A+ Sbjct: 297 CLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQ 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q + + + +L D+ + +L + + + E+++ Y + G + +D R Sbjct: 357 KQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQR 416 Query: 421 SIHVH--YSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 S + ET D L + + ++VK + F R++ L ++ Sbjct: 417 SGEGKTAFYETTDQLLADDLLGTISQAE--ILVKGARQFQFERIVQHLAKQ 465 >gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii PKo] gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii ACA-1] gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii PKo] gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii ACA-1] Length = 463 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 110/444 (24%), Positives = 192/444 (43%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAP----QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + D + + Sbjct: 32 SLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA R+ IAITGS GKTTTKE+L LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGISYVGEMDLLSQILKPEIVIITNISYAHMQAFR 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 G++ IA K++I + + D + +AK +K +Y ++ N Sbjct: 212 GLQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDYENLNI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + L Sbjct: 267 -KSFSFSEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIETT 325 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 326 ----FQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440 GE + H DL + N ++L G L ++D+ +++Y D F S Sbjct: 380 GEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVGKYLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922] gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922] Length = 824 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 203/465 (43%), Gaps = 16/465 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62 + +L Q + IG Q + D+R+I F +KG G ++ A Q Sbjct: 7 YNLGELAQILNAKLIGDKEQT-IEEYYFDTRTIVCPTNGLFITLKGLQKSGAYYLDEAYQ 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KG +V++ + + V DVL AL LA R R + ITGS GKT Sbjct: 66 KGIRSFLVSS--IPAQPKDGANYLLVQDVLVALQMLAKHHRQRFTLPLFGITGSNGKTVV 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + SYN+ +GVP ++ + D GIFE G+S E++ L ++ Sbjct: 124 KEWLYQLLWNEYNIARSPKSYNSQLGVPFSVLLIDEHNDLGIFEAGVSQPNEMQALRCIL 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P A++T I AHL NF +A K ++ E I DD E L + + Sbjct: 184 QPTTAILTNIGSAHLENFLDRRSLALEKIQLL---EAAQEIIYPADDELIEELISSNPVF 240 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K +FGKS A QL++++ + QS +++++ G ++ QN L+ Sbjct: 241 DSKRRITFGKSDKATVQLKQYQTINGQSSIDIEISGVLFNIIIPFTDQASIQNALICCAS 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L +++ P E R + N LI++++N++ S+K A+ L+Q Sbjct: 301 IYSLNKNLNDYKSKFEKLLPIEMRLEIKEAINN---SILINDAFNSDLISLKNALDTLAQ 357 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 S + + VL D+ + + + AE+++ Y+ + + L G + A K Sbjct: 358 QSRERK---VLVLTDILQSKLADKELYQKTAELVNPYHFTEIVLIGEKISAYKKLFKS-- 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +V + D IQ + +V+++K S ++ + + ++ Sbjct: 413 YVRAFSSTDDFLRHIQHENIHNEVILLKGSRIFQLEKISDYIEKK 457 >gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707] gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707] Length = 835 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 13/471 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61 + T ++L+ ++ +V + + I DSR + FFA++ DGH +I Sbjct: 1 MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY 60 Query: 62 QKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + G + + V + L AL ++A R+R +I ITGS GKT Sbjct: 61 EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L LS + SYN+ +GVPL++ M + IFE G+S E+ L Sbjct: 121 VVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEYTLAIFEAGISMPMEMLRLQR 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP + ++T I AH NF + + K ++F + D + Sbjct: 181 IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVYDADSDEIQRGIDNLG 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +S K + + Q +S V QN L Sbjct: 238 LSDKAIGWSLTPGKAYYHVSYSHSGDCT-TTITAQHADESSTVTIPFADQASIQNATHCL 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ +L L+ F E R Q LI+++YN + S++ A+ Sbjct: 297 CLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQ 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q + + + +L D+ + +L + + + E+++ Y + G + +D R Sbjct: 357 KQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQR 416 Query: 421 SIHVH--YSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 S + ET D L + + ++VK + F R++ L ++ Sbjct: 417 SGEGKTAFYETTDQLLADDLLGTISQAE--ILVKGARQFQFERIVQHLAKQ 465 >gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 482 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 132/492 (26%), Positives = 211/492 (42%), Gaps = 40/492 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L T + + Q +IG P+ V+G + IDSR P F A+ G DGHDF Sbjct: 1 MIAL-TLDRIAEITQ-TAIGGSARPEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFA 58 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--------RLRSKAT 109 AV GA +V+ + A G + V+ AL +LA R +A Sbjct: 59 ASAVADGAAAALVSRPVDAPHLLAEG---GDEGVVAALTRLARHVARELSDPRRGAERAE 115 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++A+TGS GKTTTK+++ ++ + T A GS+NN IG PLT+ R + + E Sbjct: 116 VVAVTGSSGKTTTKDLIAQVVARMGPTVAPAGSFNNEIGHPLTVLRADTGTRYLVLEAAA 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---- 225 +G I L + P I V+ + AH+ F + IA AK E+ E L Sbjct: 176 RGIGHIAHLCGVAPPRIGVVLNVGSAHMGEFGDRDAIAKAKGELVEALPPGAADRGAGGV 235 Query: 226 ---NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281 N DD + A++ A + ++G ++A + + + L G++ Sbjct: 236 AVLNADDPRVNAMAARTRA----RVVTYGLGEDATVRATDVVMRETGAPSFTLHLAGRTA 291 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G H N L + L VD +AL P TL Sbjct: 292 RVELALVGAHQVHNALAAAAVADELGMGVDEIAEALGAATPVSRWRM---EVTEHAGATL 348 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++++YNANP SM+AA++ L ++ + R IAVL M E+GE H + E+ + + Sbjct: 349 VNDAYNANPESMRAALTTLGALA--RDRRSIAVLAHMAELGEGGGVEHERIGELAARTGV 406 Query: 402 SHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 +H+ + G + + + +++ + GDVV+VK S Sbjct: 407 AHLVVVGEAAEGIAVGAEGAARQGLWQGECVRVADVHEAAAAVRARMRTGDVVIVKGSRV 466 Query: 455 CGFYRLINLLLE 466 G R+I+L+ E Sbjct: 467 AGLERVIDLITE 478 >gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus aquaticus Y51MC23] gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus aquaticus Y51MC23] Length = 436 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 92/458 (20%), Positives = 174/458 (37%), Gaps = 42/458 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + +A G G V + S + F A+ G G +F A+ KGA Sbjct: 18 TPEWVAEATGGRLHPGG--GPVRDLHWHSGQVGEGFLFVALPGSRAHGREFAGEALAKGA 75 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 LV+ + A+ V+D AL +L A R ++A+ GS GKTT KE Sbjct: 76 SLVLSDRPGRAT--------VEVEDPYKALIRLGRALRDLFPGPVVAVGGSSGKTTAKEA 127 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L A G+ N + ++P + + ELG+ +GE+ L L RP Sbjct: 128 LAQGL----GFPAPEGNQNTAPPLARFFLKLPQEAPGAVVELGVDRVGEMAELMELARPD 183 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV+T + HL F ++ + + + + A + Sbjct: 184 LAVLTALGEEHLLAFGDLKGVVEEEMGLLKAPM------------------ALVSQQAKE 225 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG + + + + + + + Sbjct: 226 VLLAFGHRVDWPTYGFGQATFRGEGLELLPQESRFRYRGLPVRVPYPGLGPALGALAAMA 285 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ G ++++YNANP S+KA ++ L+ Sbjct: 286 AAEVLGWDLLEVAERLAHLRLPPGRMERREIGGVVFLNDAYNANPLSVKAGLAWLAAQP- 344 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 GR+ AVLG+M E+ E + H+++AE + ++ ++L G A ++ Sbjct: 345 ---GRKWAVLGEMRELAEKALELHLEVAEEAARLGLTPLYL-GPFAKA-----QAALGGE 395 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 E ++ ++++ + GD+V +K+S + G R++ L Sbjct: 396 AVEDLEAALAWLKARVRPGDLVYLKASRAVGLERILEL 433 >gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bradyrhizobium japonicum USDA 110] gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110] Length = 459 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 132/492 (26%), Positives = 193/492 (39%), Gaps = 57/492 (11%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ P+WT ++ +A+ G P ++ ++ DSR + P F A+ G G FI Sbjct: 1 MSGPIWTVAEVARALGA--AGSFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGG--FI-- 54 Query: 60 AVQKGAGLVVVNTD-----------------MVASIGSLSIPVFGVDDVL-GALNKLAVA 101 D + I + +P V D L L LA A Sbjct: 55 ------SAFASARDGWEFADKAEAAGAAAMIVPHEIAGIRVPQIVVKDTLIDGLWGLARA 108 Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 AR R +I +TGS GKT+TKE L ++ YA S+NN GVPLTL D Sbjct: 109 ARARFNGPVIGLTGSAGKTSTKEFLAAYPNA----YASPSSFNNFWGVPLTLCNARPDAS 164 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+GM+ GEI L+ L RP +A++ + P HL +E I K I GL + G Sbjct: 165 LWVVEMGMNQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVSIALGLPEDG 224 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + L LKA + + +SW V + GK Sbjct: 225 VLVLPAG------LKASEWKGKVVRFGEHAEVHEVTH------APHGESWQVVAMIGKKQ 272 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G + + + T+ Sbjct: 273 IAFSLTPGAPHRVQNALAALASIRAANLDAATLAIKLDRVGIMTGRGVEQAVGG---VTV 329 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID+S+N NPAS+ AA+ L + GRRIAVLGDM E+G+ + S+H L + L I Sbjct: 330 IDDSFNGNPASVAAALHSLQARNV-TGGRRIAVLGDMLELGDDAPSYHTGLTKHLD--GI 386 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFY-- 458 V+ G + L + LP + + + L + S L GDVVVVK S F+ Sbjct: 387 DGVYCVGPLMRHLFEVLPSGKALGWHDDPATLKPGEVASLLKAGDVVVVKGSKKM-FWVN 445 Query: 459 RLINLLLEEFPA 470 + + L+ A Sbjct: 446 KFVPGLVAALQA 457 >gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 836 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 89/431 (20%), Positives = 168/431 (38%), Gaps = 12/431 (2%) Query: 25 GFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + ISIDSR I +P F A+KG +DGH F+ A + GA +V+ D I Sbjct: 23 AVIKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQPPYPLKDI 82 Query: 84 PVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + V+D L A LA A R R++ ++AI GS GKT K++L L+ K A S Sbjct: 83 ILLRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMASPES 142 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 +N+ IGVPL+L ++ + + E S GE+ L ++ P ++T+I HL Sbjct: 143 FNSQIGVPLSLFKIKDSHEIALVEAAFSEPGEMEVLADIIMPEHVILTSIGAKHLHTLGS 202 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 +E A ++ + L+K + F L+ + ++ S+ Sbjct: 203 LETTALEMVKLLQPLKKDNWALIPSTPLFGPHLQER---TSRCLFWTQPDSRLPHAISAS 259 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + + + T + L + Sbjct: 260 TTPQMTLPYSVHFPDQYLFQGEMTKGFSYSLDLINTACKSAWLFDLPSHTISEVLQTYQ- 318 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R I++ Y+++P SM A++ L ++ + + + G + + Sbjct: 319 --FEPMRTEIWKAPTGMLFINDPYSSDPQSMDQALTRLQYLASNEKK--TLIFGGLKGIS 374 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 + ++ + + ++ +I H+ L G +L L + + T+ ++ Sbjct: 375 DQRENEYRRIGLAIAQSHIQHLMLIGPLSDFQSLVSKLLPHTTISFYPTIAHALRHLREV 434 Query: 441 LVDGDVVVVKS 451 VV++K Sbjct: 435 EDPRQVVLIKG 445 >gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] Length = 447 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 187/462 (40%), Gaps = 19/462 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + D + + + G +IDS+ + P + FFA+ G DGH F+ HA Sbjct: 1 MRAML-LEDWVSLMLSDVSCPKCDKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA VV+ D S + + VDD AL + + T++ ITGSVGKT Sbjct: 60 ATAGAVAAVVSHDYQGD--SFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE LSSI KT+A SYN+ + VPL+L D D I E+G+S G ++ L Sbjct: 118 TTKEFSKTILSSIYKTHASPKSYNSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLR 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+P IAVIT I H +F E S +LL S Sbjct: 178 IVQPEIAVITHINDQHAMHF------------PQGIQEILKEKSYILQKSKLQLLPKDSP 225 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S K + ++ + ++ E + + L Sbjct: 226 YYLDLRSCSPTAEKFSFSFNDPLADFCYKAISGDSVVIQTPEENYCLPIAFSYKPAYTNL 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I L+ ++ + + P+ + +I+++YNA P +M AA+ L Sbjct: 286 LIAVALSWILEVPEEGVIRSLPELKLPPMRFEHSMRNGMQVINDAYNACPEAMIAALDAL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G+ I +LG M E+G S+ H +AE + ++ G + ++ L Sbjct: 346 PL--PSDGGKIILILGHMAELGRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKS 402 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 S V + + + ++ GDV+++K S + L+ Sbjct: 403 YSCEVSFFSSAQDVKDILKQVARYGDVILLKGSRALALESLL 444 >gi|255038732|ref|YP_003089353.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Dyadobacter fermentans DSM 18053] gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053] Length = 824 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 93/446 (20%), Positives = 181/446 (40%), Gaps = 15/446 (3%) Query: 30 ISIDSRSIA-PQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------ 81 I DSR ++ P FFAIKG +DGH F+ G VV Sbjct: 18 ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWD 77 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 ++ V + AL +L + R + ++ I GS GKT KE L LS + A Sbjct: 78 DAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVASPK 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 SYN+ IGVPL++ + + IFE G+S E+ +L +++P I + T I PAH F Sbjct: 138 SYNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYLQPVMQPTIGIFTNIGPAHDDGFR 197 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ + K +F ++K ++ L K ++T S+G + + Sbjct: 198 SRKQKITEKLRLFTKVKKLIYRKDYHEIDEEISLILKPVNAFLET-LSWGSNYSGSHVQV 256 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + +++ + + + + +N+ + + + + + + Sbjct: 257 TFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDFGLEPAVIQERVLLLK 316 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P R +ID++YN + + A++ L+Q R+ +L D+ + Sbjct: 317 PV---SMRLELKEGINHSYIIDDAYNNDLQGLAMALNFLAQ--QEQRNRKTVILSDVLQT 371 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G+ + ++ +LS +I + G + + + Y +T L F +L Sbjct: 372 GQTPTELYKMVSRLLSEKSIDRLIGIGKQISSQASLFDIAEQEFYDDTDSFLKTFAFPTL 431 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467 +V+VK + F ++++ + ++ Sbjct: 432 -ADTLVLVKGARPFSFEKIVHRIQQK 456 >gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae LPCoLN] Length = 447 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 187/462 (40%), Gaps = 19/462 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + D + + + G +IDS+ + P + FFA+ G DGH F+ HA Sbjct: 1 MRAML-LEDWVSLMLSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA VV+ D S + + VDD AL + + T++ ITGSVGKT Sbjct: 60 ATAGAVAAVVSHDYQGD--SFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE LSSI KT+A SYN+ + VPL+L D D I E+G+S G ++ L Sbjct: 118 TTKEFSKTILSSIYKTHASPKSYNSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLR 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+P IAVIT I H +F E S +LL S Sbjct: 178 IVQPEIAVITHINDQHAMHF------------PQGIQEILKEKSYILQKSKLQLLPKDSP 225 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S K + ++ + ++ E + + L Sbjct: 226 YYLDLRSCSPTAEKFSFSFNDPLADFCYKAISRDSVVIQTPEENYCLPIAFSYKPAYTNL 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I L+ ++ + + P+ + +I+++YNA P +M AA+ L Sbjct: 286 LIAVALSWILEVPEEGVIRSLPELKLPPMRFEHSMRNGMQVINDAYNACPEAMIAALDAL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G+ I +LG M E+G S+ H +AE + ++ G + ++ L Sbjct: 346 PL--PSDGGKIILILGHMAELGRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKS 402 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 S V + + + ++ GDV+++K S + L+ Sbjct: 403 YSCEVSFFSSAQDVKDILKQVARYGDVILLKGSRALALESLL 444 >gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301] Length = 789 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 164/464 (35%), Gaps = 51/464 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHA 60 + + + G G V + DSRS+ F A+ G ++D H F+ Sbjct: 3 YRLSQIAAVVGGRFSGT--DCEVQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQM 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +G +V + A V++ + AL LA R + + T++ ITGS GKT Sbjct: 61 YARGVRAFMVERPLEALPECG---YVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE + L + K Y SYN+ +GVPL++ + D + E G+S GE+ L Sbjct: 118 VIKEWIAEELPAGMKCYRSPKSYNSQLGVPLSVLMIEGDEQLALIEAGISKPGEMARLER 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP + V T+I AH NF +E+ ++ ++ +Y + ++ ++ Sbjct: 178 IIRPDVVVFTSIGDAHQENFLNLEQ--KCDEKMVLAHRAETIVYHSYYEPLGRMIASRFA 235 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + S + E + ++ Sbjct: 236 GRKLCDAASCPE---------------------------VPETLIGNEASRRNARIVEAF 268 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 A T +++ LI+++YN + S+ A+ L Sbjct: 269 CAAMGYPAPSFTEAPEVAMRLEV---------KDGINDSVLINDAYNLDLNSLALALDYL 319 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ VL D+ + G + +A +++ + + G + Sbjct: 320 HNVALSRRR--TLVLSDIAQSGLTDDELYGRVAGMVARAGVDTLVGIGPKLKRYAALF-- 375 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + D I V G V++K + F +L + L Sbjct: 376 GCDREFYASTDECIARIGRRAVAGRAVLLKGAREYRFEKLAHAL 419 >gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029] gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029] gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] Length = 447 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 187/462 (40%), Gaps = 19/462 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + D + + + G +IDS+ + P + FFA+ G DGH F+ HA Sbjct: 1 MRAML-LEDWVSLMLSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA VV+ D S + + VDD AL + + T++ ITGSVGKT Sbjct: 60 ATAGAVAAVVSHDYQGD--SFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE LSSI KT+A SYN+ + VPL+L D D I E+G+S G ++ L Sbjct: 118 TTKEFSKTILSSIYKTHASPKSYNSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLR 177 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+P IAVIT I H +F E S +LL S Sbjct: 178 IVQPEIAVITHINDQHAMHF------------PQGIQEILKEKSYILQKSKLQLLPKDSP 225 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S K + ++ + ++ E + + L Sbjct: 226 YYLDLRSCSPTAEKFSFSFNDPLADFCYKAISGDSVVIQTPEENYCLPIAFSYKPAYTNL 285 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I L+ ++ + + P+ + +I+++YNA P +M AA+ L Sbjct: 286 LIAVALSWILEVPEEGVIRSLPELKLPPMRFEHSMRNGMQVINDAYNACPEAMIAALDAL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 P G+ I +LG M E+G S+ H +AE + ++ G + ++ L Sbjct: 346 PL--PSDGGKIILILGHMAELGRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKS 402 Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 S V + + + ++ GDV+++K S + L+ Sbjct: 403 YSCEVSFFSSAQDVKDILKQVARYGDVILLKGSRALALESLL 444 >gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia valaisiana VS116] gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia valaisiana VS116] Length = 463 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 111/444 (25%), Positives = 188/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G V + D + + Sbjct: 32 SLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHESECIEYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 ELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + KAK +K +Y ++ N Sbjct: 212 ELQVIAFEKSKIIGRNIEIFVLNEMNDYCVYLEKKAKIENPNVKIVYFDFENLNI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + K E +G H N + + + L + Sbjct: 267 -KSFSFLEGKIFYDFIYKGFEYSILLLGRHNIFNAIGCINLALFLGMGEKEIREG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K Q + ++++SYN N S A ++ ++ + +LG E+ Sbjct: 322 IETAFQKGRAEIFTQNGYLILNDSYNGNMGSFMALKDIILDLNIQNKK--FIILGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GE H DL + N ++L G LA++D+ +Y D F S Sbjct: 380 GEFEYKTHKDLIQEAISMNFDKIFLIGEEFLAVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 510 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 123/479 (25%), Positives = 189/479 (39%), Gaps = 26/479 (5%) Query: 6 TFHDLLQAIQGH----SIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T DL + + H + V + ID+ + P F + G H DG D A Sbjct: 21 TTGDLAELVSAHGTPCRLQGSAAVPVGPQVVIDTHQVTPGALFVGLPGEHVDGADLAPQA 80 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSV 117 GA +V D+ A +P V+D L+ LA AITGS Sbjct: 81 AGAGAAAALVGHDVTA-----GLPRLIVEDAGRGLSALATGVVATELARGLITFAITGSS 135 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L L + T + G++NN IGVPL+ + + + E+G G++ Sbjct: 136 GKTSTKDLLAQVLEATGPTVSPAGNHNNEIGVPLSACGVDATTRYLVSEMGSRGKGDVAT 195 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L +V P I+ + + AHL F + IA AK EI E L G LN DD + Sbjct: 196 LCRIVPPRISTVLNVGTAHLGEFGSQDAIAEAKGEIVEALPADGWAVLNADDPRVAAMAP 255 Query: 238 KSHALGIKTIY------SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 +++A + S + + + + V G + Sbjct: 256 RTNAHIARWTTTGAARASDAELFVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLIG 315 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 Q + T L A +D A A S+ R +G LI++SYNANP Sbjct: 316 AHQVLNATAAATMALAAGLDPAAVAASLSTATTRSPLRMELHELRGGIALINDSYNANPD 375 Query: 352 SMKAAISVLSQISPHGEGRR-----IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 SM AA+ ++ + IA+LG+M E+G S H +A + + I V Sbjct: 376 SMAAALHAVAAMGAARHDEYPRARTIAILGEMGELGTQSARLHARVARLAADLGIDIVIA 435 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 G H + A + + + + LV GD+V+VK+S S + LL Sbjct: 436 LGDHAGTMAQAAREGGAQARAARKEEVADSL--ELVPGDIVLVKASRSMALEDITAQLL 492 >gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 458 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 213/469 (45%), Gaps = 23/469 (4%) Query: 1 MNP-LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 MNP + T+ +G G G +G I +DSR I + F A+ G + DGHDFIL Sbjct: 3 MNPKIHTWSQYASLAEGMLKGD--DGEFSGLIRVDSRKIEEGDLFVALSGKNMDGHDFIL 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 A +GA +V++ I L I V V D L K+A RL+ +IA+TGS Sbjct: 61 DAFSRGAHCALVSSSWGEKIRDLPEGIRVIEVADPEQGLIKIAR-HRLKGLKNVIAVTGS 119 Query: 117 VGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 VGKT+T+EM+ S Y S+N IG LT+A MP D I E+G +H GEI Sbjct: 120 VGKTSTREMIFLALGGSSSGVYRARSSHNTRIGCALTVAEMPEDTSVLILEMGTNHPGEI 179 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + L AVIT IAPAHL +E + AK EI E IF + + Sbjct: 180 SEMVDLYPVDTAVITEIAPAHLEGLGSLEGVLDAKLEILESPNLRKVIFNGDNPMLSSAV 239 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 K +S + ++ S G D +L E+ + + + K + Sbjct: 240 KERSFGKNWQALSVGSSGSYVLEDIRLE----WQERPVLSMIIGEKQGRSSYGIKAKLTG 295 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + LGI ++ + + S+ ++G ++DESYNANP SM Sbjct: 296 IHNASLLGIAWATAVELGISPEEASIRLSSIKPYHGRGVLKDRGGILVLDESYNANPKSM 355 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 +A + +++Q SP +R+ +LG+M E+GE S S H ++ + V+L G ++ Sbjct: 356 EALLDLVAQ-SPFPREKRLLILGEMGELGEGSLSLHEEILKKALPLG--TVFLFGSMWIS 412 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 LK V E ++ L ++S L G + +K S + G RL+ Sbjct: 413 LK------PPVKVYEDIESLSSDLKSLLSKGYFIAIKGSRTNGLERLME 455 >gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium cellulosum 'So ce 56'] gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium cellulosum 'So ce 56'] Length = 490 Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 115/475 (24%), Positives = 197/475 (41%), Gaps = 17/475 (3%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++ +L +A G + P G+S DSR+IAP AF A+ G +DGH F+ A Q Sbjct: 10 APFSLDELARATGGRVLRSGPDA--RGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQ 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAIT 114 +GA +V+ ++ G ++ V+D L AL LA A R R +A I+AI Sbjct: 68 RGAAAFIVSREVALPPGGGAV---LVNDGLTALGALARAHRERWRAGAHPGGPRAIVAIG 124 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHL 172 GS GKTTT + L+++ + + N + G+P+TL + F + E+G + Sbjct: 125 GSAGKTTTTRTIAALLAAVGRGEVHATAGNLNNAIGLPMTLLGLEDRHRFAVVEIGTNQR 184 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 GE+ L + P +AV+T+I H +E++A+ + ++ L G N DD Sbjct: 185 GEVAALARIAGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAALPAEGVALGNGDDVKV 244 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 ++ A T FG+ R+ S + VV Sbjct: 245 VEQLERAGAARRITYG-FGERARIRIAGRRPVGVRGTSVRIERGGEALELVVPLLGEAGA 303 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + + + T A + R +ID+SYNANP S Sbjct: 304 LAAAAAVAVVEEAVGEPLSTERAARAAAGLAPPGDGRLSVRELPDGTVVIDDSYNANPLS 363 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411 M++++ +++ R + +LG+M E+G L+ + H L E + + + G Sbjct: 364 MRSSLRTAVEVAEALGKRLVLLLGEMRELGALAAAEHDALGEQVGAARPAALVAVGGEAA 423 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + A + ++ D Q + GD+V+VK S R++ L+ Sbjct: 424 RIARAAEAAGVRAWFAGDADAAAARAQEIVERGDLVLVKGSRGIRMERIVEALVA 478 >gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jonquetella anthropi E3_33 E1] gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jonquetella anthropi E3_33 E1] Length = 468 Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 194/469 (41%), Gaps = 22/469 (4%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + DLL G + + +DSR++ P + F A +G DGH +I A+ Sbjct: 9 AVLSLKDLLP--NGLDVTGPDRPLPLTFRVDSRAVEPGDGFAAFQGESTDGHLYIESALA 66 Query: 63 KGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 +GA +V+ V+ P AL +LA A +R + A+TGSV Sbjct: 67 RGASVVLAERGRVSEKLPAQWPQVTFIFGHRSETALAELARAYLVRLPDLKHVAAVTGSV 126 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTT+ L +S+ ++T+A G+YN IG + + P DV + E+G +H GEI Sbjct: 127 GKTTTRSFLARIMSASQRTHAASGNYNTLIGCSVAVLSAPFDVQCLVLEMGANHPGEIAQ 186 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + P A IT +APAHL F ++ + KA IF G + LN D+ L + Sbjct: 187 MVSFFPPTAAAITEVAPAHLEGFGSVQGVLREKAGIFGG-GRLKDAVLNADNPLLAELAS 245 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + S D + ++ + S + V + + Sbjct: 246 QINTPVTTFGRDGSLSFEDD------RLEWDEGFKVSARLCYSGDRVPVSVRLSGKHGLY 299 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +++ +A+ E R Q LIDESYNA+P SM AAI Sbjct: 300 PLCCALALAVRMGVPFRQAVREAVSFESLPGRGEVVRLQNGAFLIDESYNASPKSMTAAI 359 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L ++ GR+ A+LG M E+G + + H + EV G + A Sbjct: 360 QSLGEV--QIRGRKFALLGSMGELGAGASAAHQQVMEVARGQGFDWWGAYGSDWQSGAKA 417 Query: 418 LPRSIHVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + +L GDV++VK S++CG RL+ L Sbjct: 418 TDN-----LLTDWEEVRRAVAGLNLRSGDVLLVKGSHACGLERLVKELK 461 >gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia hermsii DAH] gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia hermsii DAH] Length = 464 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 202/471 (42%), Gaps = 25/471 (5%) Query: 7 FHDLLQAIQ-GHSIG--IVPQGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILH 59 D+L ++ +G Q V+ S+DSR I + +FA KG DG F+ + Sbjct: 6 IKDILDSLGDVKFVGYLSSMQRVVSFYSLDSREINDENSGASLYFAYKGDRVDGFSFVEY 65 Query: 60 AVQKGAGLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + G V + D S+ +V+ L LA R+ IAIT Sbjct: 66 LIDIGVKCFVCSKDYEHLCVEYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFKRIAIT 125 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTKEML LS KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYVGE 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + L+ ++ P I ++T I+ AH+ F +E IAS K+EI + T + LN + Sbjct: 186 MNLLSEILEPEIVIVTNISYAHMQAFEDLEMIASEKSEIIT--KSTQMVILNESCPYHSR 243 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+ + ++ + + Q++ + +++ + +G ++ G H Sbjct: 244 LREIAKSISPEINIFY--FDFNSLQIKSFAFLNDKFSYDFTYKGFDYSILLP--GKHNIF 299 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N + + + +L + L K L + ++++SYN N S Sbjct: 300 NAISCINLALLLGMSENEIRNGLLN----ADFQKGRAELLRVKDYLVLNDSYNGNLGSFM 355 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A + +G++ +LG E+G+ + H + L N V+L G + Sbjct: 356 ALKE--MILDFEIKGKKFIILGSFKELGKFAYEAHKTAMREVILMNFDKVFLIGEEFQEV 413 Query: 415 KDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 K S ++ Y + ++L G + +K S S R+++ L Sbjct: 414 KRRENLSLNNLCYFSNFEDFIDCFVNNLESGCFIAIKGSRSNRLERVLDYL 464 >gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC 23834] gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC 23834] Length = 464 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 128/474 (27%), Positives = 203/474 (42%), Gaps = 28/474 (5%) Query: 3 PLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSI----APQ-EAFFAIKGPHYDGHDF 56 P+ T DL + + + + DSR + F A+ G +D HDF Sbjct: 4 PMPTL-DLAFVCRALNLPAPQHNLPIRRVITDSRQAAAADERGTDLFVALVGDKHDAHDF 62 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + + +GA +V D +A GSL V D L AL LA A R ++ ITGS Sbjct: 63 VPAVLAQGALALVSRQDCIALSGSLP-----VADTLAALQTLAAAWREAVNPMVLGITGS 117 Query: 117 VGKTTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 GKTT KEML L A G++NNHIG+PLTL + + + E+GM+H G Sbjct: 118 SGKTTVKEMLAAILRRQFGEAAVLATAGNFNNHIGLPLTLLALRPQQRYAVIEMGMNHFG 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 E+ LT + P A++ AH+ F G+ +IA AK+EI+ GL ++GT + +D + Sbjct: 178 ELDALTRIACPDAALVNNALRAHIGCGFDGVGDIARAKSEIYRGLPESGTALIPAEDEYA 237 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E+ +A AL ++ I + + ++ Q + V G H Sbjct: 238 EVFRAACRALNLRQIEF--GVDKGEVHAENVRLLPLGCRFDLVWQDQRAAVELPVPGKHN 295 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N + + + + AL+ R + T+ID++YNANP S Sbjct: 296 VANAVAAAALALQAGVGLSESATALA---GFANIKGRLQRKAGLRGSTIIDDTYNANPDS 352 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHV 411 MKAA+ VL ++ RI V+GDM E+G+ + + H ++ I + G Sbjct: 353 MKAALDVLVELPA----PRIFVMGDMGELGDDEAPALHAEIGRYARDKGIEAAYFVGDFS 408 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + +A + + D L + L + V+VK S ++ L Sbjct: 409 VEAAEAF--GVAGLWFAAKDPLQQVLVHELPEQASVLVKGSRFMQMEEVVAALQ 460 >gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia garinii Far04] gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia garinii Far04] Length = 463 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 110/444 (24%), Positives = 184/444 (41%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + D + +AK +K +Y +S N Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVYFDFESLNI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + L Sbjct: 267 -KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLVE-- 323 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 K L + + ++++SYN N S A + + +G++ VLG E+ Sbjct: 324 --TAFQKGRAEILTKNGYLILNDSYNGNMDSFMALKN--MILDLDIQGKKFMVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSS 440 GE + H DL + N ++L G L + ++Y D F S Sbjct: 380 GEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia sp. SV1] gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia sp. SV1] Length = 463 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 108/444 (24%), Positives = 190/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G V + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 ELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQTIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + Sbjct: 267 -KSFSFLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL + N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] Length = 259 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 3/237 (1%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +T ++ A++G IG GIS D+R++ + F A+ G +DGH+F+ AV +G Sbjct: 4 FTVSEVCLAVKGSLIGGSAGAIFTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+++ + I V DD AL LA RLR +IA+TGS GKTTTK+ Sbjct: 64 AAGVLISR--RDIVIPSGIAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTKD 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 M L+S K +YNN IG+PLTL + D + E+GM GEIR L + P Sbjct: 122 MTAAVLASRFKVLKTEANYNNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIRELAEVALP 181 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + V+T + H+ +E IASAKAE+ E +++ I N D+ + +++K+ A Sbjct: 182 TVGVVTNVGETHIELLGSLENIASAKAELVENIQEGLVIL-NADNPYVYAMRSKTKA 237 >gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX9] gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX9] Length = 456 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 114/467 (24%), Positives = 187/467 (40%), Gaps = 21/467 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + I V G SIDSR+I E FFA+ G DGHD++ A+ G Sbjct: 3 LTLGQVADWIHAEGDFTTSSEAV-GYSIDSRTIGAGELFFAVTGDRVDGHDYVEAALANG 61 Query: 65 AGLVVVNTDMVASIGSLSI---PVFGVDD----VLGALNKLAVAARLRSKATIIAITGSV 117 A VV+ +AS + + V + VL A+ LA+ R +I +TGS Sbjct: 62 AVAAVVSNRWLASDEPREVDPCKLLWVPEGEECVLRAMQLLALRVRQSWGGRVIGVTGSA 121 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ LSS G+ NNH GVPL L R+ + + + E+GM+H GEI+ Sbjct: 122 GKTTTKEMVATVLSSQFSVLKSAGNLNNHFGVPLQLLRLEAEHEVAVIEMGMNHSGEIKR 181 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + P V++ +A HL F +A + + + D + Sbjct: 182 LAEIAEPQWGVVSNVAAVHLEFFPAGIAGIAAAKRELIEALPSDGLAILNGDDEWV---- 237 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +G+ ++ + + + V G + EV +G H N L Sbjct: 238 RGFGVGVDSVLYGLGDEAQVRATNVVEAGLDGVSFTVHAGGDTAEVHLALLGKHNVSNAL 297 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + + AL+ + RG L+++SYN+NP ++ A + Sbjct: 298 AAIAVGWKSGMTLTACAAALAEMRATDKRGAVIEWRG----AKLLNDSYNSNPKALDAMV 353 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L RI V G+M E+G + H ++ + + L Sbjct: 354 DALISTPATR---RIVVAGEMLELGPEGPALHKACGRRMAEQGVDLIVGVRGLAADLVSG 410 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + ET + ++ +++ GDVV++K+S R + L Sbjct: 411 A--GEKAVFVETPEAAGNWLTANVKAGDVVLLKASRGVRLERALEKL 455 >gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii PBr] gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii PBr] Length = 463 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 111/445 (24%), Positives = 187/445 (42%), Gaps = 24/445 (5%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + D + +AK +K +Y +S N Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVYFDFESLNI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + Sbjct: 267 -KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A + + +G++ VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMDSFMALKN--MILDLDIQGKKFMVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQS 439 GE S H DL + N ++L G L ++ + L ++Y D F Sbjct: 380 GEFSYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKC-LYYFSEFDKFIDFFLK 438 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 SL +V+K S R++N + Sbjct: 439 SLEPSVFIVIKGSRFNRLERILNYI 463 >gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 450 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 126/468 (26%), Positives = 194/468 (41%), Gaps = 24/468 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M PL + ++ + G G V +D R P F A G DGHDF Sbjct: 4 MIPL-SLGEIAVVVDGTVEGDGA-VMVTAPAVLDGRQAEPGGLFVAFAGDRVDGHDFAEQ 61 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSV 117 A + GA V+ + S V D V RLR T+ +TGS Sbjct: 62 AGEAGAVAVLGSRPTSLST-------VVVKDVQAAVQALAAYVVGRLRDGLTVAGLTGSQ 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT+TK++L +SS T A + S+NN IGVP+T+ R F + E+G +G+I Sbjct: 115 GKTSTKDLLATVVSSTAPTIAAVDSFNNEIGVPVTMLRADAASRFLVLEMGARRVGDIAD 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 LT LV P +AV+ + +HLS F + IA AK E+ GL GT LN DD +++ Sbjct: 175 LTGLVAPDVAVVLNVGQSHLSYFGSRQAIAKAKGELVRGLAPGGTAVLNADDPVVVAMRS 234 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ + +FG +++AD ++ ++ + + A Sbjct: 235 LTNGPVL----TFGYAEHADVRVVDLTL--DRLSRPSFTLRTADGSAFVELPLVGAHQAH 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 V+ A A S R TL+++S+N+NP S +AA+ Sbjct: 289 NASAAVAAGLAAGVPLDVAASALATASLSKWRMELRELDSGATLLNDSFNSNPDSTRAAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 ++ GRRIAVLG+M E+G+ +S H E + V G + D Sbjct: 349 DA---LAGIEGGRRIAVLGEMLELGDDHESEHRAAGEYAAARADVVV-AVGGIASLVADG 404 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 S D +++ + GDVV+VK+S + L+ Sbjct: 405 AGDS--AVALPDNDAAIDWLRGHITAGDVVLVKASRGVFLDEVAAALV 450 >gi|260171780|ref|ZP_05758192.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides sp. D2] gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 846 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 191/484 (39%), Gaps = 34/484 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++I +G + ++ + DSRS++ + FFA+ G +I +G Sbjct: 5 IESIAKSIGARRMGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63 Query: 65 AGLVVVNTDMVASIGSLSIP----------------------VFGVDDVLGALNKLAVAA 102 V+ + I + + V + L AL KLA A Sbjct: 64 VRNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAH 123 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + K +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ + + Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ + Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + L + A + T S+ + + ++ V Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEM 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 I + ++ L ++ + A + E R + LI Sbjct: 297 DNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ I+ Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461 + G + + + ++ + L I SL +V++VK S F + Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVS 475 Query: 462 NLLL 465 L Sbjct: 476 EELE 479 >gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a] gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b] gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a] gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b] Length = 846 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 191/484 (39%), Gaps = 34/484 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64 + ++I +G + ++ + DSRS++ + FFA+ G +I +G Sbjct: 5 IESIAKSIGARRMGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63 Query: 65 AGLVVVNTDMVASIGSLSIP----------------------VFGVDDVLGALNKLAVAA 102 V+ + I + + V + L AL KLA A Sbjct: 64 VRNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAH 123 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R + K +I ITGS GKT KE L LS + SYN+ IGVPL++ ++ + + Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 GIFE G+S +GE+ L +++P I ++T I AH NF ++E K +F+ + Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + L + A + T S+ + + ++ V Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEM 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 I + ++ L ++ + A + E R + LI Sbjct: 297 DNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++SYN++ AS+ A+ L + S +R +L D+ E G+ + + + +A+++ I+ Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461 + G + + + ++ + L I SL +V++VK S F + Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVS 475 Query: 462 NLLL 465 L Sbjct: 476 EELE 479 >gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylibium petroleiphilum PM1] gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylibium petroleiphilum PM1] Length = 470 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 110/470 (23%), Positives = 184/470 (39%), Gaps = 23/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ + + G ++ P + + D+R++ + F A+KG +D HDF+ A Sbjct: 1 MSVMMDLRLAHALLPGSTLVGDPATPLLRVHSDTRTLRAGDLFVALKGERFDAHDFLPQA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V + + V D AL L R R +IA+TGS GKT Sbjct: 61 R----AAGAVAAIAEHGLAEAGLAGLHVADSRAALGTLGANWRARMSLPLIAVTGSNGKT 116 Query: 121 TTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVD----VDFGIFELGMSHLGE 174 T +M+ L + +A G++NN IGVPLTL R+ D + ELGM+H+GE Sbjct: 117 TVTQMIASILRAWVGDAAFATEGNFNNDIGVPLTLLRLRQDADTWHRAAVVELGMNHVGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + P +A++ H + +E +A + + + Sbjct: 177 IAQLARMAAPTVALVNNAQREHQEFMASVEAVARENGAVI----EVLGANGTAVFPSDDA 232 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A AL + + + + + + + G+H + Sbjct: 233 HAAVWQALAGTRPTLTFSLEGPSDLVAEAVWSGDHWAAVLHTPAGATAIRLRVAGWHNVK 292 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L ++ + L F P +GR + TL+D+SYNANP S++ Sbjct: 293 NALAATACALAAGCPLEAVARGLEAFEPVKGRSQVKALQRGGRAVTLVDDSYNANPDSVR 352 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ + G R VLGDM E+G+ +FH ++ + I +W +G A Sbjct: 353 AAIDVLATLP----GPRWLVLGDMGEVGDQGPAFHAEVGRYAAACGIDALWTAGAASAAA 408 Query: 415 KDALPRSIHVHYSETMDGLFLFI--QSSLVDGDV-VVVKSSNSCGFYRLI 461 A + H ++ L + + +VVK S ++I Sbjct: 409 AAAFGPAARAH--ASVAELIAALGPDTHAAPEAASIVVKGSRFMKMEQVI 456 >gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D- alanine ligase [Thermus thermophilus HB27] gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D- alanine ligase [Thermus thermophilus HB27] Length = 438 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 175/459 (38%), Gaps = 44/459 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + +A+ G G V + S + P F A+ G G FI A+ +G Sbjct: 17 LTPEWVARAVGGRLHPGG--GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARG 74 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LV+ + A+ V+D AL +L A R ++A+ GS GKTTTKE Sbjct: 75 ASLVLADQAGPAT--------LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKE 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L L A G+ N + + + ELG+ GE+ L L +P Sbjct: 127 ALAQGL----GLPAPPGNLNTAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 H+AV+T + HL F +E+ +A + + L+ G Sbjct: 183 HLAVLTALGEEHLEAFGTLEKAVQEEAHLL---RAPTALVGEQAAPLVLGLREDLLVYGF 239 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 G+ + +++ H + Sbjct: 240 AEGTFRGRDLELGLRESRFRYGG-----------------LHVRVPYPGLGPAYGALAAL 282 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +++ ++ + G ++++YNANP S+KA + L+ Sbjct: 283 AAAEVLGLSLEEVAERLSRLTLPPGRMETREVGGVVFVNDAYNANPLSVKAGLRWLAAQP 342 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 GR+ AVLG+M E+G S H+++AE + +S ++L G H + Sbjct: 343 ----GRKWAVLGEMRELGRESLRLHLEVAEEAARLGLSPLYL-GPHARH-----QAAFSG 392 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 E+++ ++++ + GD+V +K+S + G R++ L Sbjct: 393 EAVESLEEALAWLKARVAPGDLVYLKASRAVGLERIVEL 431 >gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus thermophilus HB8] gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Thermus thermophilus HB8] Length = 438 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 175/459 (38%), Gaps = 44/459 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + +A+ G G V + S + P F A+ G G FI A+ +G Sbjct: 17 LTPEWVARAVGGRLHPGG--GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARG 74 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LV+ + A+ V+D AL +L A R ++A+ GS GKTTTKE Sbjct: 75 ASLVLADQAGPAT--------LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKE 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L L A G+ N + + + ELG+ GE+ L L +P Sbjct: 127 ALAQGL----GLPAPPGNLNTAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKP 182 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 H+AV+T + HL F +E+ +A + + L+ G Sbjct: 183 HLAVLTALGEEHLEAFGTLEKAVQEEAHLL---RAPTALVGEQAAPLVLGLREDLLVYGF 239 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 G+ + +++ H + Sbjct: 240 AEGTFRGRDLELGLRESRFRYGG-----------------LHVRVPYPGLGPAYGALAAL 282 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +++ ++ + G ++++YNANP S+KA + L+ Sbjct: 283 AAAEVLGLSLEEVAERLARLTLPPGRMETREVGGVVFVNDAYNANPLSVKAGLRWLAAQP 342 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 GR+ AVLG+M E+G S H+++AE + +S ++L G H + Sbjct: 343 ----GRKWAVLGEMRELGRESLRLHLEVAEEAARLGLSPLYL-GPHARH-----QAAFSG 392 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 E+++ ++++ + GD+V +K+S + G R++ L Sbjct: 393 EAVESLEEALAWLKARVAPGDLVYLKASRAVGLERIVEL 431 >gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 446 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 115/437 (26%), Positives = 189/437 (43%), Gaps = 27/437 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 I IDSR + + F A+KG DG+DFI A+++GA V N S + VF Sbjct: 19 RKIRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNR------SSDNPAVFF 72 Query: 88 VDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D L + A SK IAITGS GKTTTKE+L LS K + G+ N Sbjct: 73 HPDPKKLLIEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLNTE 132 Query: 147 IGVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 IG+P+ + + D+ IFE G S G+I FLT LV P IAV+ + AH NF+ Sbjct: 133 IGIPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLNVGTAHRGNFNDE 192 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E+ K IFE L+K T N DD + ++ + G D ++ K+ Sbjct: 193 TELLQEKCSIFETLQKDSTAITNGDDKRIRSMISELSCKKLFFGQRNG-----DLKIMKF 247 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 +++ + G+ GI + ++ + + + P Sbjct: 248 DYSKNNTFVAFKAFGEMKMAKLKGIWNSGQLLDFGAAYLTALSLKIEEPLLNINRIILPF 307 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R N LI++ YN++ S+++AI ++++ AV+G + E G+ Sbjct: 308 NNRF----SVENIAGIILINDCYNSSLESVESAIKSIAKLKKER---TFAVVGSILEQGK 360 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLV 442 S+ H +L +L+ H+ L +A+ + ++ + S + + +++ + Sbjct: 361 YSKKTHEELGRLLNF--FDHIVLYTKDTQ--VEAVQNTANIDFKSSNPEEVAEWLKKNCR 416 Query: 443 DGDVVVVKSSNSCGFYR 459 GD+V K+S Sbjct: 417 YGDLVYFKASRGVALEE 433 >gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa HTCC2155] gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa HTCC2155] Length = 455 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 113/468 (24%), Positives = 204/468 (43%), Gaps = 18/468 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + F++L QA+ G ++ D+R FFA +G ++DGH+++ AV+ Sbjct: 1 MLDFNELCQALNGEALVRDANYDDYRAFESDTRKDLTDTVFFAFEGDNFDGHNYLDLAVE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTT 121 KGA ++VV ++ S+ + VDD + A +L + K A ITGS GKT+ Sbjct: 61 KGARVLVVAKEVELLTLD-SVAMIKVDDTVKAWQRLGHFLLQKQKSARRFGITGSSGKTS 119 Query: 122 TKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T +L+ L I+ G+ NNHIGV + R+ D F E+G +H GEI L Sbjct: 120 TNAILSQLLEFIRPKQVLSTHGNTNNHIGVTQNIVRLKGDESFFSLEVGTNHPGEIADLA 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +V PH A++T++ +H+ NFSGI+ I K +IF + + G + + ++ Sbjct: 180 KIVVPHAAILTSVGASHIGNFSGIDAIFDEKIDIFRYMARDGVAIVPAA--LVKRIEDAL 237 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLM 298 T SFGK K AD +L ++ E+S V+L+ + G H N+ Sbjct: 238 PERKDITYISFGKEKYADVRLGSYELGLEKSTFLVKLKSGESLSLESILSGEHQLLNICA 297 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + ++ + I L T + + YNANP S A + Sbjct: 298 CVALLENYQEEYSFTISDLKSALSSVALPGMRMKTEKVEDQTFVLDCYNANPQSTSAFLD 357 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 + + G + VLGDM E+G++++ +H ++ + + G + Sbjct: 358 WVKSVYKSG----VLVLGDMLELGDMAKKYHQEILDKAKAMQGFDLVTVGECFKEVNQEG 413 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + ++++ F++ ++ + + K S ++ + L + Sbjct: 414 KA-----FLDSLE-AGAFLKENIKVNETLFFKGSRGIQLEKIYHKLRD 455 >gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis vadensis ATCC BAA-548] gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis vadensis ATCC BAA-548] Length = 459 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 190/465 (40%), Gaps = 24/465 (5%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP +T +L +A +G + D+R F A+ G +D HD++ AV Sbjct: 3 NPTFTGKELAEATRGSWRDGRLPAEAVAVYTDTRVAGEGRLFLALPGEKFDAHDYLAQAV 62 Query: 62 QKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119 GAG + + D + +PV VDD L A K+A R R ++A+TGSVGK Sbjct: 63 AAGAGGLCIRRDRAEKLPEPCPVPVLEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVGK 122 Query: 120 TTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 T+ KE++ L++ G+ NN IGVP L R+ + + E+G +H GEI Sbjct: 123 TSVKEIVRAILTAASSPEAVLYTEGNTNNQIGVPQNLLRLNSRHRYAVIEMGTNHHGEIE 182 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L+ + P +++ +IAP HL +E +A K+ IF GL ++G + D E+L Sbjct: 183 PLSRMAEPLASLVNSIAPCHLEFLGSLEGVAREKSHIFCGLPESGAAVIPADGPAVEVL- 241 Query: 237 AKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A ++ FG+ D R E S E+ + + + Sbjct: 242 --ETAAESYRVFRFGEDVSRCDAAARYLGGTLEGSRFELSFRTGERFTLEWALTGRHQAR 299 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +++ I A +V T ++++YNANP SM+A Sbjct: 300 NAAAAAALAVAIGIPPETIAAGAVHA---RLPGMRSKVTRLDGVTYVNDAYNANPGSMRA 356 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLA 413 A++ L++ + R + VLG+M E+G + H L E + + G Sbjct: 357 ALANLAEFA--DPARLVLVLGEMRELGGSEAAEHRALVENALQTFPGV-RLLTVG----- 408 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 A + + + + + DGD+V K S Sbjct: 409 --RAFGECPGALRFDRSEEVGETLAKLVRDGDLVFAKGSRGIAVE 451 >gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 72a] gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 64b] gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 118a] gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 72a] gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 64b] gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 118a] gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi N40] Length = 463 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 189/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + Sbjct: 267 -KSFSFLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL + N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia duttonii Ly] gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia duttonii Ly] Length = 465 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 110/472 (23%), Positives = 196/472 (41%), Gaps = 26/472 (5%) Query: 7 FHDLLQAI-QGHSIGIVPQGF--VNGISIDSRSIA-PQE---AFFAIKGPHYDGHDFILH 59 D+L ++ IG V V+ S+DSR I +FA KG DG F+ + Sbjct: 6 IKDILDSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKY 65 Query: 60 AVQKGAGLVVVNTD-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + G V + D + + +V+ L LA +++ IAIT Sbjct: 66 LIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAIT 125 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTKEML LS KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGE 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + ++ P I ++T ++ AH+ F ++ +A K++I + T + LN Sbjct: 186 MNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQHVY 243 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+ + ++ + + N + + K + G H Sbjct: 244 LEEIAKSVNPNINIFYFEFHNLQIRSFSFV----NDKFSYDFTYKGCDYSILLPGKHNIC 299 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N + + + L + L K + + ++++SYN N +S Sbjct: 300 NAISCINLALFLGLSENEIRNGLLH----ADFQKGRAELVRIKDYLVLNDSYNGNLSSFM 355 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A + + R+I VLG E+G+ + H E + L N V+L G A+ Sbjct: 356 ALKE--MILDLEIKDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKVFLIGEEFQAV 413 Query: 415 K--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 K D+L + + Y + ++L G + +K S + R+++ L Sbjct: 414 KRVDSLSSNSCLFYFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465 >gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 156a] gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi 156a] Length = 463 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 188/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K E +G H N + + + L + Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL + N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia garinii PBi] gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia garinii PBi] Length = 463 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 109/444 (24%), Positives = 184/444 (41%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA +G DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINVSLYFAYRGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + DV+ L LA R+ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSDVIKLLQTLASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ FE+G S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAGFEVGGSYIGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + D + +AK +K +Y +S N Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVTNEMNDYCIYLEKRAKIANPNVKIVYFDFESLNI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + Sbjct: 267 -KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A + + +G++ VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFIALKN--MILDLDIQGKKFMVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSS 440 GE + H DL + N ++L G L + ++Y D F +S Sbjct: 380 GEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSEFDKFIDFFLNS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868] gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868] gi|315022146|gb|EFT35175.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Riemerella anatipestifer RA-YM] Length = 814 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 175/464 (37%), Gaps = 27/464 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58 MN +T + + IG + + DSR I F AIK +G +I Sbjct: 1 MN--YTARQIAEITGAKLIG-AGDKIIKHFAFDSRIIYSPKNTGFVAIKTKKNNGEKYIA 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 AV+KG L+V + + + VDD + L KLA I ITGS G Sbjct: 58 SAVEKGIELIVSEHKT---LDNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNG 114 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE L LS + S+N+ IG+PL+L + + GIFE+G+S E+ L Sbjct: 115 KTIVKEWLYQCLSEDIRCVKSPKSFNSQIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTL 174 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P I V+T I AH+SNF + + K + + + +L + Sbjct: 175 ETIFSPKIGVLTHIGSAHISNFKSEKHLVDEKISL-------FKDSESIIFNGDNILVSN 227 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + N D + ++ + + Sbjct: 228 KINTLYSSKNLISYGFNKDNNIHISSNWKDRQQPITV--QCFDKSFSFPAQQRDEATLSN 285 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L I++++ + K + + + R +I++S+N + S+K Sbjct: 286 VLAIIAVMHLLEFSTEKMIEKINNLKAVEMRLESVNGIKNNLIINDSFNLDLDSLKI--- 342 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 I + + ++ ++ D E + + + ++A +++ N + V+L G + + L Sbjct: 343 AFEFIKSYQKPKKSLIITDFTEK-SDADNLYQEVASLINEQNFNKVFLIGEEISQYQHLL 401 Query: 419 PRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRL 460 + T + LF + + +++++K + ++ Sbjct: 402 --NTESFSFNTTNDLFSNQEFKDL--ENELILLKGARKFEIEQV 441 >gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi ZS7] gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Borrelia burgdorferi ZS7] Length = 463 Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 188/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K E +G H N + + + L + Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGAFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL + N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Deferribacter desulfuricans SSM1] gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Deferribacter desulfuricans SSM1] Length = 453 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 194/443 (43%), Gaps = 18/443 (4%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 N + I+S+ + + F A+KG + DG+ F A ++GA L V + + S++ Sbjct: 22 VEYNNVVINSKEVKKGDIFLALKGTNVDGNSFFKEAYERGAILTVFDNPYFYNKASINK- 80 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D A+ + + A +AITGSVGKTTTK++L S ++Y +YN Sbjct: 81 -VLVEDSFNAIKSFGIWKLKNNFAKRVAITGSVGKTTTKKLLYEIFSKQYQSYMSYKNYN 139 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N +G+ ++ A +P +VD+ FE+G + GEI+ T +RP +AVIT IA +H+ F + Sbjct: 140 NELGIAISCANIPDEVDYAFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLN 199 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 EIA+ K I E D + K + K I++ G S+ ADF++ K Sbjct: 200 EIAAEKFSIAETDSVKELWLNENDTVYL-----KDEIVKNKKIFTVGFSEKADFRIIDIK 254 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 V+ + + YH N M G+ + D +A+ F P Sbjct: 255 SLDGGYEFYVKFNRDKFKFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLP-- 312 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 ++ N +ID++YNA+ S+ AA+ L + + + + Sbjct: 313 --EEKRGVVYNYENIAIIDDTYNASIDSITAALKSLDKYKCFNKDKIAIIGEIAEIE-GF 369 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + L E + V G + D ++ + L+ ++ +++ G Sbjct: 370 EDEIYEKLIEFAKKLSGVTVIFCGDYF----DKYEDFENIKFFNNKQKLYKYL-NNINSG 424 Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467 +VK+S S F +++ L+ + Sbjct: 425 CF-LVKASRSKKFEEIVDYLITK 446 >gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia recurrentis A1] gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia recurrentis A1] Length = 465 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 108/472 (22%), Positives = 197/472 (41%), Gaps = 26/472 (5%) Query: 7 FHDLLQAI-QGHSIGIVPQGF--VNGISIDSRSIA-PQE---AFFAIKGPHYDGHDFILH 59 D+L ++ IG V V+ S+DSR I +FA KG DG F+ + Sbjct: 6 IKDILDSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKY 65 Query: 60 AVQKGAGLVVVNTD-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + G V + D + + +V+ L LA +++ IAIT Sbjct: 66 LIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAIT 125 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GS GKTTTKEML LS KT G+ N+ IG+PL++ R D ++ +FE+G+S++GE Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGE 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + ++ P I ++T ++ AH+ F ++ +A K++I + T + LN + Sbjct: 186 MNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQYVY 243 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+ + ++ + + N + + K + G H Sbjct: 244 LEEIAKSVNPNINIFYFEFHNLQIRSFSFI----NDKFSYDFTYKGCDYSILLPGKHNIC 299 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N + + + L + L K + + ++++SYN N +S Sbjct: 300 NAISCINLALFLGLSENEIRNGLLH----ADFQKGRAELVRIKDYLVLNDSYNGNLSSFM 355 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 A + + ++I VLG E+G+ + H E + L N ++L G A+ Sbjct: 356 ALKE--MILDLEIKDKKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKIFLIGEEFQAV 413 Query: 415 K--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 K D+L + + Y + ++L G + +K S + R+++ L Sbjct: 414 KRVDSLSSNSCLFYFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465 >gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae TN] gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae Br4923] gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl -2,6-diaminopimelate--d-alanyl-d-alanyl ligase [Mycobacterium leprae] gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae] gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (D-alanine:D-alanine-adding enzyme) [Mycobacterium leprae Br4923] Length = 517 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 119/520 (22%), Positives = 194/520 (37%), Gaps = 65/520 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + + G + I P+ V G + DSR++ P F A+ G DGHD Sbjct: 1 MIDL-TVARVTEIVGGALVDISPEEAAERRVTGSVEFDSRAVGPGGLFLALPGARSDGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGA-------LNKLAVAARLRS- 106 + V + + +P V D L A + Sbjct: 60 HAA-------SAIAAGAVAVLAARPVGVPAIVVAPDPRTGDGGLTGVLEHDADGSGAAVL 112 Query: 107 -----------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 TII ITGS GKT+TK+++ + L + + A S+NN +G Sbjct: 113 AALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAVVLELLGEVVAPPESFNNELGH 172 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 P T+ R D+ I E+ G I L + P I V+ + AHL F E IA Sbjct: 173 PWTVLRATRSTDYLILEMSARRPGNIAALAAIAPPKIGVVLNVGTAHLGEFGSREAIART 232 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--------NADFQLR 261 K E+ + + ++G + LN DD + + A I+ Sbjct: 233 KTELPQAIMQSGVVILNVDDPAVAAMADATVARVIRVSRGSYSHPGSPNSPDVWTGPVSL 292 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + + E+ G H N L + A V+ AL+ Sbjct: 293 DELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATG 352 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRR 371 P R + T+ID++YNANP SM+A + L+ I R Sbjct: 353 PV--SRHRMQVTTRADGVTVIDDTYNANPDSMRAGLQALAWIAHGGTHDKNQPGSCARRS 410 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVH 425 AVLG+M E+GE S + H + + ++S + + G + A+ + Sbjct: 411 WAVLGEMAELGEDSITEHDRIGRLAVRLDVSRLVVVGGGRSINAMHRGAVMEGSWGLETV 470 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 +++ + GDVV++K+S+S G L ++L+ Sbjct: 471 NVADPAAALTLLRAEVRPGDVVLIKASHSVGLGALADVLV 510 >gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi Bol26] gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi Bol26] Length = 463 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 188/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K E +G H N + + + L + Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFIALKNMILDLNIQNKK--FIVLGAFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL + N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus ruber DSM 1279] gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus ruber DSM 1279] Length = 439 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 106/468 (22%), Positives = 167/468 (35%), Gaps = 50/468 (10%) Query: 1 MNPLWTFHDL-----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M P T +L G + + DSR + P AFFA+ G G + Sbjct: 1 MVPSNTPKELRPEWVASLTGGQVHPGAS--VAHDLHWDSRQVGPGVAFFALPGARTHGRE 58 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 F AVQ GA VV + + + V AL + A R + + +++A+ G Sbjct: 59 FGQQAVQAGAAFVVSDLNHPGA--------VQVARPERALLAVGRALRDQFRGSVLAVGG 110 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 S GKTTTKE L L A G+ NN G+ + + + ELG+ L E+ Sbjct: 111 SSGKTTTKECLAQGL----AWPAPEGNLNNAPGLTRFFFHLEP-AEGCVVELGIDRLLEM 165 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 LT+L RP I V+T + HL +E + ++ + + + L Sbjct: 166 AELTYLARPDIGVLTGLGVEHLEGLGNLENVVREESWLLQVSPLRLASVQAAELLDLPNL 225 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 G A + K G Sbjct: 226 VTYGIEAGDFRAEGVEMGLEATRFRFEGKVVH-----------------LPYPGVGPVMG 268 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L L + +L + I+ L+ GR +R R I ++YNANP S Sbjct: 269 ALAALAVARMLDKPLAQTIERLAALRLPPGRMQRLRLGGID----FIHDAYNANPLSF-- 322 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 GR+ VLG M E+G+ + H++ A + + + + V+ G Sbjct: 323 --KAGMAFLQAQPGRKWLVLGRMAELGQEALKHHLEAARLAAAVSPNLVF-VGPFAKQQA 379 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 ET++ + + GD+V +K+S S G RL+ L Sbjct: 380 AEAG----GTAVETIEEAVQLLFGKVQPGDLVYLKASRSVGLERLLEL 423 >gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Rv] gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis AF2122/97] gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Ra] gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis F11] gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis GM 1503] gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis K85] gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis K85] gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis GM 1503] gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis 210] gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu001] gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu006] gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Rv] gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis AF2122/97] gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis H37Ra] gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis F11] gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis K85] gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis GM 1503] gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu001] gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu006] gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis W-148] Length = 510 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 130/516 (25%), Positives = 201/516 (38%), Gaps = 63/516 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + + G I PQ V G + DSR+I P F A+ G DGHD Sbjct: 1 MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS---- 106 V +V + + +P V +VL + + + Sbjct: 60 HAA-------SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAA 112 Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P Sbjct: 113 LAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D+ I E+ H G I L + P I V+ + AHL F E IA KA Sbjct: 173 TVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKA 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ + + +G + LN DD + + A ++ A + Sbjct: 233 ELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTL 292 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 Q EV G H N L + A V+ AL+ P R + Sbjct: 293 HAHDAQ---AEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQ 347 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H Sbjct: 348 VTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEH 407 Query: 390 IDLAEVLSLYNISHVWLSGF------------------HVLALKDALPRSIHVHYSETMD 431 + + ++S + + G A D V+ D Sbjct: 408 DRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGD 466 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ L GDVV+VK+SN+ G + + L+ + Sbjct: 467 AALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 502 >gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 1435] gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 605] gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis KZN 4207] gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis KZN R506] gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium tuberculosis KZN V2475] gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 1435] gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 605] gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis KZN 4207] Length = 510 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 130/516 (25%), Positives = 200/516 (38%), Gaps = 63/516 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + + G I PQ V G + DSR+I P F A+ G DGHD Sbjct: 1 MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS---- 106 V +V + + +P V +VL + + + Sbjct: 60 HAA-------SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAA 112 Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P Sbjct: 113 LAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D+ I E+ H G I L + P I V+ + AHL F E IA KA Sbjct: 173 TVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKA 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ + + +G + LN DD + + A + A + Sbjct: 233 ELPQAVPHSGAVVLNADDPAVAAMAKLTAARVARVSRDNTGDVWAGPVSLDELARPRFTL 292 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 Q EV G H N L + A V+ AL+ P R + Sbjct: 293 HAHDAQ---AEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQ 347 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H Sbjct: 348 VTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEH 407 Query: 390 IDLAEVLSLYNISHVWLSGF------------------HVLALKDALPRSIHVHYSETMD 431 + + ++S + + G A D V+ D Sbjct: 408 DRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGD 466 Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ L GDVV+VK+SN+ G + + L+ + Sbjct: 467 AALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 502 >gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 94a] gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 94a] Length = 463 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 187/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K E +G H N + + + L + Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi JD1] Length = 463 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 187/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K E +G H N + + + L + Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Mycobacterium abscessus ATCC 19977] gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Mycobacterium abscessus] Length = 491 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 123/499 (24%), Positives = 191/499 (38%), Gaps = 49/499 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 T ++ + + G GI Q V G + DSR ++P F A+ G DGHD Sbjct: 1 MTVAEIAEIVGGRLDGISAQEARQARVTGTVEFDSRQVSPGGLFLALPGARADGHDHAR- 59 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS------------- 106 G V + + +P V A +++ Sbjct: 60 ------GAAEAGAVAVLAARPVGVPAIVVPPTGVARTEVSALEHDSDGSGAAVLAATAAL 113 Query: 107 -----------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 I+ ITGS GKT+TK+++ LS + + A GS+NN +G P T+ R Sbjct: 114 AAEVARRLTARGLRIVGITGSSGKTSTKDLIAAVLSPLGEVVAPPGSFNNELGHPWTVLR 173 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 F + EL G I L + P I V+ + AHL F + IA K E+ + Sbjct: 174 ATESTKFLVLELSARRPGNIAELAAIAPPSIGVVLNVGTAHLGEFGSRQAIADTKGELPQ 233 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L G LN DD+ + AK+ A ++T A ++ + Sbjct: 234 SLSGGGVAVLNADDAAVAAMAAKTPARVVRTSVHHPADIWATEVSVD---DLARARFTLH 290 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 S+ V G H N L + A + AL+ P R R + Sbjct: 291 AGQDSVPVQLAVHGEHHVSNALAAAAVALECGATLAQVAAALAGAGPVSRR--RMEVSTR 348 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLA 393 T+I+++YNANP SM A + L ++ HG R AVLG+M E+G + S H + Sbjct: 349 DDGVTVINDAYNANPDSMMAGLKALVSMARHGGEPRRSWAVLGEMAELGPDAISEHDRIG 408 Query: 394 EVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 ++S + + G A+ + + S L GDVV Sbjct: 409 RAAVRLDVSRLVVVGTGRSQRAMHAGAVMEGSWGSEAVLVDDPAAAASLLASELAAGDVV 468 Query: 448 VVKSSNSCGFYRLINLLLE 466 +VK+S S G + + + LL+ Sbjct: 469 LVKASRSAGLWVVADELLK 487 >gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Borrelia burgdorferi B31] gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Borrelia burgdorferi B31] Length = 464 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 188/445 (42%), Gaps = 22/445 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 K E +G H N + + + L + Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ ++ + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL + N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465 L +V+K S R++N+ Sbjct: 440 LEPSVFIVIKGSRFNRLERILNIFR 464 >gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pyramidobacter piscolens W5455] gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pyramidobacter piscolens W5455] Length = 451 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 115/443 (25%), Positives = 180/443 (40%), Gaps = 19/443 (4%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---F 86 + +DSR E F A++G DGH FI + KG L+V S P Sbjct: 20 VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79 Query: 87 GVDD-VLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + L LA + +AITGSVGKT+ K L K +A G+Y Sbjct: 80 LTPERCEYGLASLASVYLKSLERLRETVAITGSVGKTSAKNDTKALLEGYFKIHAAAGNY 139 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 N IG +T+ P D + + E+G +H GEI +T + P IA +T +APAHL NF + Sbjct: 140 NTLIGCAVTVLAAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVTEVAPAHLENFGSL 199 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E + AK EIF + + + + + G+ A L Sbjct: 200 EGVLQAKTEIFASENLRCAVINGDNGMLCKR-AEELRLPEVIRFGRRGEVLFAREHLSWE 258 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 K + L G S + G H + + I L +L Sbjct: 259 KDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGRLGLSSREIAASLPKCR-- 316 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 R L++ ++DE YNA+PA++KA+++ + S GRR +LG+M E+G Sbjct: 317 -NSAGRGEIRLSESGAAILDECYNASPAAVKASLAAMD--SADIPGRRFLILGEMLELGT 373 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLV 442 S S H + E + ++L G + +Y +++D L + + Sbjct: 374 ASVSEHGKIFERALRVS-DLLYLFGEEWKNV-----DGTADYYYDSIDALIEAVDGTRPG 427 Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465 +GDV++VK S R++ L Sbjct: 428 EGDVILVKGSRGNHLERVVRALE 450 >gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Borrelia burgdorferi 80a] Length = 463 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 187/444 (42%), Gaps = 22/444 (4%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 ++ IA K++I + + D + +AK +K +Y ++ + Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + K E +G H N + + + L + Sbjct: 267 -KSFSFLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + K L + + ++++SYN N S A +++ + + VLG E+ Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLDIQSKK--FIVLGSFKEL 379 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440 GEL+ H DL N ++L G L ++D+ +Y D F S Sbjct: 380 GELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439 Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464 L +V+K S R++N + Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463 >gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pecorum E58] gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pecorum E58] Length = 435 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 18/438 (4%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G++IDSR + P + FFA+ G DGH+F+ HA Q GA V++ + + + Sbjct: 13 KISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGD--NYGLEF 70 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D AL + + + II I+GS+GKTTTKE + LSS+ + + SYN+ Sbjct: 71 VRVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLSSVYRVFMSPKSYNS 130 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + VPL++ D DF + E+G+S ++ L +V+P +AVIT IA H +F Sbjct: 131 QLTVPLSILMADGDEDFLLLEMGVSEPKDMHNLLSIVQPEVAVITHIATQHTMHF----- 185 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 E S +LL S S K + + Sbjct: 186 -------PRGIQEIVEEKRQILQGSSLQLLPKDSPWYKDLCEVSPSAEKFSFSFHDQAAD 238 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 +S + ++ + + Q L I L ++T ++ L P Sbjct: 239 FCYKSLDSHGVTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLETPLEHLISSLPDLK 298 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + +I+++YNA P +M AA+ L SP G+ I +LG M E+G S Sbjct: 299 LPPMRFEQSLRNGIHVINDAYNACPEAMLAALEAL--PSPSNGGKVILILGHMAELGVYS 356 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444 + H +A L ++ G + + V + + + ++ + G Sbjct: 357 EEGHALVATKA-LSRAHVIFFIGEKWSPVLHMVQHHSCQVEFYSAPHDIEMILKDLVQQG 415 Query: 445 DVVVVKSSNSCGFYRLIN 462 DVV++K S S L+N Sbjct: 416 DVVLLKGSRSLALESLLN 433 >gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 101/437 (23%), Positives = 179/437 (40%), Gaps = 27/437 (6%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 I IDSR ++ + F +KG DG+DF+ A+ KGA LV + V Sbjct: 17 RNIVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFD------DQRVLR 70 Query: 88 VDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 VDD L + A + +SK I ITGS GKTTTKE+ + LS + + + G+ N Sbjct: 71 VDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGNLNTE 130 Query: 147 IGVP---LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 IG+P L R +G+FE G S G+I L +V+P IAV+ + AH+ NF I Sbjct: 131 IGLPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVLLNVGSAHVGNFKDI 190 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 +E+ K IF+ + + D+ + + + G+ ++ DF + + Sbjct: 191 DELLQEKLSIFKSKRLSRAVLGGCDE------RLREFSKGLPVEVLLFGKEDVDFSIVDF 244 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + G + Y ++ + ++ + + Sbjct: 245 AYDKGDTMLHFFCDGDRFVRLRGIWSYGQLLDLGAAYLVARLVGVEEPSVFLNDY----- 299 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + T+I + YN++ S ++AI + ++ + IAV G + E G Sbjct: 300 KLPFSDRFTVSILKGITVISDFYNSSLESWESAILSIEKLRSSRK---IAVAGSILEQGR 356 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + H L E+L L + A+ A S++ + + ++ ++ Sbjct: 357 EEKRTHERLGELL--SKFDETVLFTRDM-AINAASKNVKPALVSDSEEEIAAWLHRNVRS 413 Query: 444 GDVVVVKSSNSCGFYRL 460 GD+V K+S + + Sbjct: 414 GDLVFFKASRAIALEGV 430 >gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia turicatae 91E135] gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D- alanine ligase [Borrelia turicatae 91E135] Length = 464 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 173/445 (38%), Gaps = 24/445 (5%) Query: 31 SIDSRSIA-PQE---AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G V + D + Sbjct: 33 SLDSREINAKNSSASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKDCESLCLEYLNRDE 92 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 ++ +V+ L LA R+ IAITGS GKTTTKEML LS KT G Sbjct: 93 NLVFLLTSNVVILLQNLAAHFITRTSFKRIAITGSNGKTTTKEMLYSILSERYKTCKTWG 152 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R D ++ +FE+G+S++GE+ L ++ P I ++T I+ AH+ F Sbjct: 153 NLNSDIGLPLSILRTEGDEEYAVFEVGISYIGEMNLLAEILNPEIVIVTNISYAHMQAFE 212 Query: 202 GIEE-IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +E A + + + ++ + + F + F Sbjct: 213 DLEIVTAEKGKIMTKSTQMVILNESCPYHLHLRVMAKSINPGINIFYFDFHSLQIRSFAF 272 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 K + + K + G H N + + + +L + L Sbjct: 273 VNDKFFYDFT-------YKGFDYSILLPGQHNIFNAISCIHLALLLGLSENEIRNGLLH- 324 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 K L + ++++SYN N S A + +G++ +LG E Sbjct: 325 ---ADFQKGRAELLRVKDYLILNDSYNGNLGSFMALKE--MILGLEIKGKKFIILGAFKE 379 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQS 439 +G+ + H + L N +L G +K + ++ Y + + Sbjct: 380 LGKFAYEVHKTAIREVVLMNFDKGFLIGEEFQEVKKIENLALDNLFYFSNFENFIDYFVK 439 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 +L + +K S S R+++ L Sbjct: 440 NLESECFIAIKGSRSNRLERILDYL 464 >gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas endodontalis ATCC 35406] gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas endodontalis ATCC 35406] Length = 827 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 101/465 (21%), Positives = 185/465 (39%), Gaps = 11/465 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAV 61 ++T + + I H I + F+ DSRS+ FFAI+ DGH +I Sbjct: 1 MYTLQTIAEKIHAHQCAIRSEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLY 60 Query: 62 QKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 G VV + V DV+ +L K+A R ++ +TGS GKT Sbjct: 61 NHGVRSFVVKDEFDKLTQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L L+ + SYN+ +GVPL++ +M + IFE G+S LGE+ + Sbjct: 121 IVKEFLYQLLADTYRVVRSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLGEMARIEE 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P I VIT I AH NFS I + K +F G ++ D+ + Sbjct: 181 VIKPTIGVITNIGSAHQENFSSIAQKVDEKLLLFGGCDRIVYNM---DEPEIVAGLQRLG 237 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L +S K A +R + + + + + G + +N+L + Sbjct: 238 LLSRARGWSR-KDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENVLTCV 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ + + S P R +I++ YN + S+K A+ Sbjct: 297 LTTIIINPSLIDHPELFSKLEPV---EMRLELIEGNKNNLIINDVYNNDINSLKIALDFQ 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 Q + + + +L ++ + + + + E++ Y IS + G + A ++ P Sbjct: 354 QQRATDADLEPVLILTEIQQSALNERPLYSRVGELIGKYRISKFYGIGKELFAYREFFPT 413 Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 I ++ +++ + +++K + S R+ + L Sbjct: 414 EIGERNFFPSVEDFLSSDIPQQLSQACILIKGARSFHCERISDRL 458 >gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 370 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 175/382 (45%), Gaps = 14/382 (3%) Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P V D A +LA R++ A ++A+TGS GKT+ KEM LS T Sbjct: 1 DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAS 60 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F Sbjct: 61 NFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG 120 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 + +A AK EI+ GL + G +N D++ + ++ + + N+DF Sbjct: 121 SLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIGDRQVWR--FSPNAANSDFTAA 178 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S + +Q S++V+ G H N L + + A + L+ Sbjct: 179 NIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALK 238 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 GR + + N ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+ Sbjct: 239 AVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAEL 291 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G S++ H+ + E I V +G + A S + L + + L Sbjct: 292 GAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVGEHFADKAALIARLHALL 348 Query: 442 VDG--DVVVVKSSNSCGFYRLI 461 + ++VK S S ++ Sbjct: 349 QEQPMMTILVKGSRSAAMEDVV 370 >gi|188995058|ref|YP_001929310.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Porphyromonas gingivalis ATCC 33277] gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277] Length = 823 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 180/467 (38%), Gaps = 11/467 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAV 61 ++ F +L + + ++ IV + + DSR+++ FFA++ DGH +I Sbjct: 1 MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60 Query: 62 QKGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KG V+ + V L AL ++A R +I ITGS GKT Sbjct: 61 DKGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L L + SYN+ IGVPL++ +M + GIFE G+S +GE+ L Sbjct: 121 IVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLES 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ P +IT I AH NF I+ K +F + E + A Sbjct: 181 IICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFPHCHTIV------YNGDCEEIAAAIS 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ + L + S+ + E+ + + A ++ + Sbjct: 235 FCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPF-TDAASIEDII 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +++++ + A F E R T+I++ Y+ + S+ A+ Sbjct: 294 HCITLISVLCPEVLSARKRFASLEPVEMRMEVKAGDHGNTIINDVYSNDVYSLTLALDFQ 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + +++ +L D+ + G + + +A L +Y + G + + + Sbjct: 354 RRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFA- 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + + +++K + F ++ L+++ Sbjct: 413 GMSAVFFKDVAAFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQ 459 >gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 377 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 113/387 (29%), Positives = 182/387 (47%), Gaps = 14/387 (3%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +G+S DSR I P + F A+ GP +DGH+++ KGA +V ++ + ++ Sbjct: 3 DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----AL 58 Query: 84 PVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 P V D AL +L R + A+TGS GKTT KEML L + A G+ Sbjct: 59 PQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 118 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 NN +GVPLTL + + + ELG S +GEI + L +PH+A+IT AH+ F G Sbjct: 119 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 178 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + I AK EI EGL GT LN +D F + + ++ + T + + Sbjct: 179 PDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRAGDRNVLTFALTDSAADVYASELS 238 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + + V + +G H N L + ++ + L+ P Sbjct: 239 -RDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQP 297 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 +GR + +ID++YNANPAS+ AA+ +L+ + GR + VLGD+ E+G Sbjct: 298 VKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELG 350 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGF 409 E ++ H ++ + +S ++ G Sbjct: 351 EWAEQGHREVGAYAA-GKVSALYAVGP 376 >gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia spielmanii A14S] gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia spielmanii A14S] Length = 463 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 111/446 (24%), Positives = 190/446 (42%), Gaps = 26/446 (5%) Query: 31 SIDSRSIAPQE-----AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGS 80 S+DSR I + +FA KG DG F+ + + G + + D + + Sbjct: 32 SLDSREIN-GDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDN 90 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + DV+ L LA R+ IAITGS GKTTTKEML LS KTY Sbjct: 91 EGLVFLLTSDVIKLLQTLASVLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTW 150 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 G+ N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I AH+ F Sbjct: 151 GNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMELLSQILKPEIVIITNINYAHMQAF 210 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++ IA K++I + + D + +AK +K +Y ++ N Sbjct: 211 KELQAIAFEKSKIIGKNIEIFVVNEKNDYCAYLEKRAKIANPNVKIVYFDFENLNI---- 266 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + K E +G H N + + + L + L Sbjct: 267 --KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIET 324 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 K L + + ++++SYN N S A +++ ++ + VLG E Sbjct: 325 T----FQKGRAEILIKNGYLILNDSYNGNMGSFIALKNMILDLNIQNKK--FIVLGSFKE 378 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQ 438 +GE + H DL + N ++L G L ++ + L ++Y D F Sbjct: 379 LGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRYSENLVEKC-LYYFSEFDKFIDFFL 437 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464 SL +V+K S R++N + Sbjct: 438 KSLEPSVFIVIKGSRFNRLERVLNYI 463 >gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus radiodurans R1] gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus radiodurans R1] Length = 433 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 107/460 (23%), Positives = 170/460 (36%), Gaps = 58/460 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 ++ DSR P AF A+ G G+ F+ A+ GA V+ + L Sbjct: 15 PQARPARRLTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTD---------L 65 Query: 82 SIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P VDD GAL A + R ++ ++ ITGS GKTT K AL + Sbjct: 66 DVPRAVRVDDARGALFAWARSERAKNPL-VVGITGSAGKTTAKSYAAAALDAHFM----- 119 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 +N + L + + E+G+ H+GE+ L LVRP + V+TTI PAHL F Sbjct: 120 PVFNTMPAIACFLVQYGASQKPLVVEMGIDHIGEMAELMDLVRPDVGVVTTIGPAHLEQF 179 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +E IA K +I + + Sbjct: 180 GMVETIAHEKGQILTARRALVGSQAAAFFPKAQF------------------PHVDSYGF 221 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 E + Q + + + + + A Sbjct: 222 GDVTFRGEGLELSPQAARFRFGGMGVILPLASRVQAEAAVLGMVLAREAGIALADAAVRM 281 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMC 379 E R L+ G FT+ID++YNA+P +++AA+ L + P GE GRRI+VLG M Sbjct: 282 SAVEVP--GGRYRLHPGRFTVIDDAYNASPVAVRAALDALHALKPEGEVGRRISVLGRML 339 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 E+G + H ++ + G L + T+ L + + Sbjct: 340 ELGPTERELHAEVGSYAREQ-ADLTYGVGEFAQELGE--------RAFATVPELLADLLN 390 Query: 440 SLVDGDVVVVKSSNSC------------GFYRLINLLLEE 467 + DGD+V+VK+S G ++ LL++ Sbjct: 391 EVRDGDIVLVKASRGISLTPEQRAVTGVGLDVVVEALLDQ 430 >gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 830 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 101/470 (21%), Positives = 185/470 (39%), Gaps = 33/470 (7%) Query: 21 IVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + ++ + DSRS++ + FFA+ G +I +G V+ + I Sbjct: 2 GKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLI 61 Query: 79 GSLSIP----------------------VFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + + V + L AL KLA A R + K +I ITGS Sbjct: 62 ENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGS 121 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT KE L LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ Sbjct: 122 NGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMG 181 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L +++P I ++T I AH NF ++E K +F+ + + L Sbjct: 182 ALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-------IYNGDNELI 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + A + T S+ + + ++ V I + ++ Sbjct: 235 SNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASI 294 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L ++ + A + E R + LI++SYN++ AS+ A Sbjct: 295 ENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIA 354 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L + S +R +L D+ E G+ + + + +A+++ I+ + G + + Sbjct: 355 LDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSA 414 Query: 417 ALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + ++ + L I SL +V++VK S F + L Sbjct: 415 RFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVSEELE 463 >gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2, 6-diaminopimelate-alanyl-alanine ligase [Brachyspira pilosicoli 95/1000] gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2, 6-diaminopimelate-alanyl-alanine ligase [Brachyspira pilosicoli 95/1000] Length = 448 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 111/468 (23%), Positives = 204/468 (43%), Gaps = 36/468 (7%) Query: 6 TFHDLLQA---IQGHSIGIVPQGFVN-GISIDSRS-IAPQEAFFAIKGPHYDGHDFILHA 60 + D+++ I N IS DSR + F AIKG ++G+DF L Sbjct: 5 SLKDIIKIANETNSKCIFNYTDENKNLQISTDSREDFNENKLFLAIKGDKFNGNDFALDT 64 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KG +++ ++ V +D + KLA R R +++ITGS GKT Sbjct: 65 YNKGCRFFILSENI---NMPKDANVVYTNDSVLFFIKLAREYRRRFNIKVVSITGSCGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKE+ + L + KT G++NN IGVP T+ + + + E GM+H E+ ++ Sbjct: 122 TTKELTALFLGTKYKTLKTEGNFNNEIGVPKTIFNLDDSYEMAVIEAGMNHKNELLRISE 181 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +I + P H++ +E IA AK+E+F ++ I N + L +AK+ Sbjct: 182 AIEADTVIINNVEPVHIAFLGSLENIALAKSELFNNAKENAIINKNTNKVDILLSEAKNK 241 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + K + +K ++ H+ IG QN+LM L Sbjct: 242 KIKNIIEADIKEIKKINDNSFVYK---------------NVTFNHNLIGDFNLQNILMAL 286 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + D++ KAL+ + K + ++I++ YN+NP ++ ++L Sbjct: 287 KAAELYNIDLEECAKALTNYQ----NQKNRMQIIKINNCSIINDCYNSNPTAL---KNML 339 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALP 419 +S E R+IA++GDM E + SFH ++ ++ NI+ V G + + + + Sbjct: 340 IYLSKREEKRKIAIIGDMLETETQNSSFHKEIGIFINSLKNINEVITVGDNSQKIDNEVT 399 Query: 420 RSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKSSNSCGFYRLINLL 464 S + + ++ I + + +++K+S F +I + Sbjct: 400 CSK--MHFKKVEESINTIIDIIKNSNEETAILIKASLGMRFNMIIEAI 445 >gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas uenonis 60-3] gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas uenonis 60-3] Length = 456 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 118/444 (26%), Positives = 204/444 (45%), Gaps = 14/444 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIP 84 +GI D+R + P F +++G H+DG+ F A+++G +V+ L Sbjct: 18 DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77 Query: 85 VFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + D AL++LA+ R +S+AT IAITG+ GKTTTKE++ LS+ + +A G+Y Sbjct: 78 LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL ++ + F I ELG SH+G+I L L +P +IT + AHLS F Sbjct: 138 NNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFGTP 197 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E + AK+E++ L + + + L + + L + L Sbjct: 198 EGVVKAKSELYAYLREHDGQAFCNGED--KTLISNLNGLPTVYYNGTSSPRITGSVLPTD 255 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + Q G+S ++ +G + N+L + + D T +A++ + P Sbjct: 256 ETGLLKIEWRDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTNYQP- 314 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + +I + YNANP+SM+ A++ + G R +LGDM E+G+ Sbjct: 315 -HNERSQVLPPTAQGNRVILDCYNANPSSMEVALNSYFTMDSQGLNRM-LILGDMNELGD 372 Query: 384 LSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 ++S HI + + Y + + + G + AL+ + H + + L + Sbjct: 373 AAESEHITVIRQIRSYLLRYPKMVTYFCGPNFFALQGHY-GNEHFIFFPSATALKQYFTR 431 Query: 440 SLVDGDVVVVKSSNSCGFYRLINL 463 +++K SNS + L Sbjct: 432 HQPQHSFILIKGSNSHHLSSIAEL 455 >gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium ulcerans Agy99] gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium ulcerans Agy99] Length = 525 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 120/516 (23%), Positives = 198/516 (38%), Gaps = 75/516 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPH--------- 50 +T ++ + + G + I PQ V G + DSR++ P F A+ G Sbjct: 4 YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAA 63 Query: 51 --------------YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96 G +VV+ + ++ +L+ + D GA Sbjct: 64 AVAAGAVAVLAARPV------------GVSAIVVSPEPDSTADALTGVLEHDADGSGAAV 111 Query: 97 KLAVAARLRS--------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 A+A ++ TII ITGS GKT+TK+++ L + + A GS+NN +G Sbjct: 112 LAALAKLAKAVAAELMAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELG 171 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 P T+ R D+ I E+ H G I L + P I V+ + AHL F E IA Sbjct: 172 HPWTVLRATRSTDYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQ 231 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHALGIKTIYSFGKSKNADFQLRKWK 264 K+E+ + + +G + LN DD + + +G T G + D Sbjct: 232 TKSELPQAVPASGVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDVWAGPVS 291 Query: 265 QCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + +V G H N L + A V AL+ P Sbjct: 292 LDRLARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPV 351 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH--------------GEG 369 R R + T+ID++YNANP SM+A + L+ I+ Sbjct: 352 --SRHRMRVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPGVRPQSR 409 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIH 423 R AVLG+M E+G + + H + + ++S + + G + A+ Sbjct: 410 RSWAVLGEMAELGADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAIYHGAVMEGSWGTE 469 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 D +++ + GDVV++K+SNS G Sbjct: 470 AVSVPDRDAALALLRAEIQPGDVVLIKASNSAGLGE 505 >gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Plesiocystis pacifica SIR-1] gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Plesiocystis pacifica SIR-1] Length = 482 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 129/486 (26%), Positives = 199/486 (40%), Gaps = 32/486 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W+ L A G + + IDSR+ P F I DGHDFI A+ G Sbjct: 3 WSPERLAAAASGRLLRAGT-RPIQAAFIDSRTPTPGGLFVPIVAAR-DGHDFIPAALAAG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ++ V V D L L +LA AR + ++AITGS GKTTT+ Sbjct: 61 ASATLVGPGRGEAVPEGDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTTRA 120 Query: 125 MLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDF---GIFELGMSHLGEIRFLTH 180 + AL + G++NNH+G+PLTL + + ELGMS GE L Sbjct: 121 FVEAALRTAFDPLICTQGNFNNHLGLPLTLVGGVAGTEPPRAAVLELGMSAPGENDHLAQ 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------ 234 + P + VIT+IA HL +E IA+A+AE L +G E Sbjct: 181 VAGPSVHVITSIALEHLEFMGSLEAIAAAEAEPLAHLRASGGHRPLAVLPGDEPALVPHL 240 Query: 235 ------LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 L+ I + ++ + + E + +++ + Sbjct: 241 PGPDSGLRVLRFGSPDAAIGAPLDVAIVAVEVGARTRAVLRLRGEDGQEDRALSLSLRTF 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H A+N + + + L D+D +AL P RG+ L LI + YNA Sbjct: 301 GAHNARNAAAAVAVAAHLGLDLDAVARALEAVEPVGDRGRLLELELGGHTHALIADCYNA 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM AA+ L+ + +G R+AVLGDM E+G + H ++ + I V G Sbjct: 361 NPGSMSAALGSLAML----DGPRVAVLGDMLELGPDEDALHREVGTEAARLGIDAVLGVG 416 Query: 409 FHVLALKDALPRSIHVHYS-----ETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYR 459 A+ +A + + + +D +I++ L G V+ K+S R Sbjct: 417 PRARAIAEAAADAKPGLVAHAVERDAVDEACAWIRARLEGASEPG-AVLFKASRGIQLER 475 Query: 460 LINLLL 465 ++ L Sbjct: 476 VVEALR 481 >gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1] gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1] Length = 844 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 112/466 (24%), Positives = 187/466 (40%), Gaps = 15/466 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL A G V +G S DSR A E F A++ P DGH +I A+ Sbjct: 1 MIDLDDLLAA-GGRLASPVYARQFSGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAA 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+ + + DD + A A + +I +TGSVGKT+ Sbjct: 60 GATGVICEKPPADL---SNTTMIVTDDPALLAARWAAARLRQVAPRVIGVTGSVGKTSAT 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + LS + T+ S+N+ IG+P++LAR+ D F + E G ++ GE+ LT L Sbjct: 117 RAIAAVLSGLAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELHRLTALFP 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+AV+T+ AP LS F + ++ + L G +N DD L Sbjct: 177 PHVAVVTSAAPMRLSAFGSVADLVREYGALVAALPVDGWAVVNGDDPALAGL----CDTT 232 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG + D + + + M V +G+S++ V IG L +G Sbjct: 233 RARVLTFGTGASCDLRGEAPQYALNGTRMRVCYRGESVDTVIPLIGEPAVGAALAAVG-- 290 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + T +A E R R L + +ID++ A P++M AA+ L+ + Sbjct: 291 -VALVCGMTLERAAERLALVEPPAGRLRPHLARSSAIVIDDTVGAEPSAMLAALRTLAIL 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 + L + + + + + + G + A+ R Sbjct: 350 PAQRRIAVLGDLPADSSIPGEQNDTYAAIGRLAART-ADLLIWKGDAGTHVMRAVQRVRT 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + T+ G + L GD+V+V + RL+ L++ Sbjct: 409 GMSATLVHTIAGALEALPPDLGAGDLVLVCGGATARLERLVAALID 454 >gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix cholodnii SP-6] gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix cholodnii SP-6] Length = 489 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 121/491 (24%), Positives = 193/491 (39%), Gaps = 39/491 (7%) Query: 1 MNPLWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 MN L T +++ + + + D+RS+ + F A++G +D HDF Sbjct: 1 MNTLMTLEHAHALIVRRQPAARLVGDGCQPIARVHSDTRSLRAGDLFVALRGERFDAHDF 60 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A GA + + AS +P V D L AL LA R +IA+TGS Sbjct: 61 LPQAQAAGAVAAIAERGLDAS----GMPGIEVPDSLLALQALAAGWRAEHLLPVIAVTGS 116 Query: 117 VGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 GKTT +M+ L + +A G++NNHIGVPLTL + + ELGM+H GE Sbjct: 117 NGKTTVTQMIAAILRAWLGDAAHATAGNFNNHIGVPLTLLALHAGHRAAVVELGMNHPGE 176 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I L + +P +A++ H +E +A + L G DD + + Sbjct: 177 IAELARIAQPTVALVNNAQREHQEFMQTVEAVARENGCVISALPADGVAVFPADDDYTPI 236 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + + + T AD + + S+++ G H + Sbjct: 237 WRELAQPRRVLTFALAEAGVAADCVAQA-SWAGDHWQARFDTPAGSIDLALGVAGRHNVK 295 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L +D + L+ F +GR + TL+D+SYNANP S++ Sbjct: 296 NALAACACALAAGCPLDAVQRGLAGFAAVKGRSQVSLLDWGGRQVTLVDDSYNANPDSVR 355 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 AAI VL+ + R +LGDM E+G+ +FH ++ + + I H W +G Sbjct: 356 AAIEVLAALPA----PRWLLLGDMGEVGDQGPAFHAEVGTLAAQRGIDHFWTAGVLCADA 411 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-------------------VVVKSSNSC 455 A ++H + L GD V+VK S Sbjct: 412 ARAYADAVHASH-----DATLVAHHVSYHGDTAALLQAIAAAGVALPPAASVLVKGSRFM 466 Query: 456 GFYRLINLLLE 466 + + L E Sbjct: 467 AMEKAVAALRE 477 >gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R3021] gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 22.4-21] Length = 399 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 113/412 (27%), Positives = 185/412 (44%), Gaps = 23/412 (5%) Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +GA +VV + + + +P V D AL +LA R + +A+TGS GKTT Sbjct: 2 SQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTT 57 Query: 122 TKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 KEM + + G++NN IGVPLTL R+ F + ELG +H EI + Sbjct: 58 VKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINY 117 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 T LV+P+ A+I IAPAHL F + + AK EI+ GL K G +N + + ++ + Sbjct: 118 TTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQK 177 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + I+ D+ ++ + + S + +++ +G H +N L Sbjct: 178 EISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNAL 231 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + A + L +GR + N L+D++YNAN S+ AAI Sbjct: 232 AATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNL---LLLDDTYNANKDSLCAAI 288 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 VL RI + DM E+GE S + H ++ + ++L N+ V G + +A Sbjct: 289 DVLKSYDA----FRILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEA 344 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467 + +E +D L I++ L VV+ K S S +I L ++ Sbjct: 345 VLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 396 >gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23] gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23] Length = 820 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 181/459 (39%), Gaps = 33/459 (7%) Query: 32 IDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----- 84 DSRS++ + FFA+ G +I +G V+ + I + + Sbjct: 3 TDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSG 62 Query: 85 -----------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 V + L AL KLA A R + K +I ITGS GKT KE L Sbjct: 63 QDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLH 122 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 LS + SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I Sbjct: 123 QLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIG 182 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 ++T I AH NF ++E K +F+ + + L + A + T Sbjct: 183 ILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-------IYNGDNELISNCVAKSMLTA 235 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S+ + + ++ V I + ++ L ++ Sbjct: 236 REIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACL 295 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A + E R + LI++SYN++ AS+ A+ L + S Sbjct: 296 YLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIALDFLVRRSEKK 355 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 +R +L D+ E G+ + + + +A+++ I+ + G + + + ++ Sbjct: 356 GLKRTLILSDILETGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFDDDLERYFF 415 Query: 428 ETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L I SL +V++VK S F + L Sbjct: 416 PNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVSEELE 453 >gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Treponema denticola F0402] Length = 430 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 170/426 (39%), Gaps = 27/426 (6%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L T +LL + + + +DSR++ F ++G + DGH +I A++ Sbjct: 14 LMTLDELLTSTGAWLVYESSSSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALK 73 Query: 63 KGAGLVVVNTDMVASI--------GSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113 GA VV+ D + + V + L AL A + I I Sbjct: 74 NGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNLYKIGI 133 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTKE+L S T + G+ N+ G+PL++ + + + GIFELGM+ G Sbjct: 134 TGSSGKTTTKEILASIYSKKYNTVSTKGNLNSETGLPLSVFEVRPEHEAGIFELGMNRKG 193 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI + ++ P+ A+IT I AH+ + IA K EIF + D Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFK----------DDALG 243 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + +K + +D ++ + + ++ + E++ G + Sbjct: 244 FIPECEFTDFLKDVPRGSVFTVSDNDSSLVQKVEDAGVLGSKIFYRGEEILFPLPGVYNV 303 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N L+ + + L P G R + GF T + YNANP SM Sbjct: 304 KNALLCIALAEKKGFSAKEIKSGLEAVRPLFG-----RSQVLHGFVTYFLDCYNANPDSM 358 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 K+AI I+ VL M E+G S H + E N +++ G + + Sbjct: 359 KSAIEFCDSINTECAKHY--VLASMLELGAKSDYEHKKIIEDALKSNADNLYFFGDDICS 416 Query: 414 LKDALP 419 + L Sbjct: 417 AFEGLN 422 >gi|34540830|ref|NP_905309.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Porphyromonas gingivalis W83] gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas gingivalis W83] Length = 823 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 89/467 (19%), Positives = 180/467 (38%), Gaps = 11/467 (2%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAV 61 ++ F +L + + ++ IV + + DSR+++ FFA++ DGH +I Sbjct: 1 MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60 Query: 62 QKGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +G V+ + V L AL ++A R +I ITGS GKT Sbjct: 61 DRGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L L + SYN+ IGVPL++ +M + GIFE G+S +GE+ L Sbjct: 121 IVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLES 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ P +IT I AH NF I+ K +F + E + A Sbjct: 181 IICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFLHCHTIV------YNGDCEEIAAAIS 234 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G+ + L + S+ + E+ + + A ++ + Sbjct: 235 FCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPF-TDAASIEDII 293 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +++++ + A F E R T+I++ Y+ + S+ A+ Sbjct: 294 HCITLISVLCPEVLSARKRFAGLEPVEMRMEVKAGDHGNTIINDVYSNDVYSLTLALDFQ 353 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + +++ +L D+ + G + + +A L +Y + G + + + Sbjct: 354 RRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFA- 412 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + + + +++K + F ++ L+++ Sbjct: 413 GMSAVFFKDVATFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQ 459 >gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus DSM 9946] gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus DSM 9946] Length = 430 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 103/453 (22%), Positives = 177/453 (39%), Gaps = 44/453 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + Q QG P ++ DSR + P AF A+ G G +F A+Q GA LV+ Sbjct: 17 VAQVTQGRVH--PPVKPALDLTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVL 74 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 + + V D AL +L A R T++ + GS GKTTTKE + Sbjct: 75 TDQAHPGA--------VQVADPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQG 126 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 L A G+ NN G+ R+ + ELG+ LGE+ L +L PH+ V+ Sbjct: 127 L----GWPAPEGNLNNAPGLAQFFFRLQPHAPGAVVELGIDRLGEMAELCYLAEPHLGVL 182 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TT+ HL +E + + + + LK G Sbjct: 183 TTLGAEHLEGLGTLENVIREETGLLASSPVRLASTQAAELVNLPGLKTYGIEAG------ 236 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 DF+ + + + Q + G + + + L Sbjct: 237 -------DFRATDLELSLDSTRFRFNGQRVYLPYPGFGPLLGALAALAVAELVGVALDPV 289 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ L++G ++++YN+NP S++A + LS + G Sbjct: 290 IERLAH--------LQLPFGRMERLHKGGLIFLNDAYNSNPLSVRAGLEFLSHLP----G 337 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R+ VLG+M E+GE S ++H++ A + + + V+ G + A ET Sbjct: 338 RKWLVLGEMRELGEESLAYHLEAARLAASVSPDVVF-VGKYAP--AQAAETGKVG--LET 392 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++ ++++ GD+V +K+S S G +L+ Sbjct: 393 LEEAKAYLKTHAQAGDLVYLKASRSIGLEQLLE 425 >gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 242 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 8/238 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 10 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 67 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T ++NN IGVP+TL R+ D D+ + ELG +H GEI + Sbjct: 122 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 181 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 L RP A++ +A AHL F + +A AK EI+ GL + G +N D++ + ++ Sbjct: 182 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI 239 >gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 458 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 16/446 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82 +GI D+R + P F +++G H+DG+ F + A+++G +V+ ++ S L Sbjct: 18 DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77 Query: 83 IPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + D AL++LA+ R +S+AT IAITG+ GKTTTKE++ LS+ + +A G Sbjct: 78 ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNN IGVPLTL ++ + F I ELG SH+G+I L L +P +IT + AHLS F Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFG 197 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E + AK+E++ L + + + L + + L + L Sbjct: 198 TPEGVIKAKSELYAYLREHSGQAFCNGED--KTLISNLNGLPTVYYNGTTSPRVTGAVLP 255 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + Q G+S ++ +G + N+L + + D T +A++ + Sbjct: 256 TDESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTNYQ 315 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P + +I + YNANP+SM+ A+S + G R +LGDM E+ Sbjct: 316 P--HNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDCQGLNRM-LILGDMNEL 372 Query: 382 GELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 G+ ++S HI + + Y + + + G + AL A S H + + L + Sbjct: 373 GDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFAL-QARYGSEHFIFFPSATALKQYF 431 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463 +++K SNS + L Sbjct: 432 TRHQPQHSFILIKGSNSHHLSSIAEL 457 >gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71] gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71] Length = 370 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 107/378 (28%), Positives = 165/378 (43%), Gaps = 21/378 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLVPADPIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEM 381 + G++IAVL DM + Sbjct: 343 PANEGGKKIAVLADMKGL 360 >gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis CDC1551] gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis CDC1551] Length = 510 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 129/515 (25%), Positives = 201/515 (39%), Gaps = 61/515 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55 M L T + + + G I PQ V G + DSR+I P F + G DGHD Sbjct: 1 MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLRLPGARADGHD 59 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS---- 106 V +V + + +P V +VL + + + Sbjct: 60 HAA-------SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAA 112 Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P Sbjct: 113 LAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPW 172 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T+ R D+ I E+ H G I L + P I V+ + AHL F E IA KA Sbjct: 173 TVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKA 232 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ + + +G + LN DD + + A ++ A + Sbjct: 233 ELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTL 292 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 Q EV G H N L + A V+ AL+ P R + Sbjct: 293 HAHDAQ---AEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQ 347 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFH 389 T+ID++YNANP SM+A + L+ I+ P R AVLG+M E+GE + + H Sbjct: 348 VTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEH 407 Query: 390 IDLAEVLSLYNISHVWLSGF--------HVLALKDALPRSI---------HVHYSETMDG 432 + + ++S + + G H L++A D Sbjct: 408 DRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEEAWGSGEATADHGADRTAVNVADGDA 467 Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +++ L GDVV+VK+SN+ G + + L+ + Sbjct: 468 ALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 502 >gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483] gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483] Length = 821 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 96/446 (21%), Positives = 173/446 (38%), Gaps = 31/446 (6%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAG-LVVVNTDMVASIGSL-------------------- 81 FFA+ G +I +G V+ D Sbjct: 17 FFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQL 76 Query: 82 -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 ++ V + L AL KLA R + K +I ITGS GKT KE L LS + Sbjct: 77 STLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSP 136 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 SYN+ IGVPL++ ++ + + GIFE G+S +GE+ L +++P I ++T I AH NF Sbjct: 137 RSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENF 196 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 ++E K +F+ + + L + A + T S+ + Sbjct: 197 FSLQEKCMEKLTLFKDCDVV-------IYNGDNELISNCVAKSMLTAREIAWSRTDIERP 249 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + +++ V I + ++ L ++ + A + Sbjct: 250 LYISRVTKKEDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERM 309 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 E R + LI++SYN++ AS+ A+ L + S +R +L D+ E Sbjct: 310 ARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILE 369 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQS 439 G+ + + + +A+++ I+ + G + + + ++ + L I Sbjct: 370 TGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFNDDLERYFFPNTEALLASNILK 429 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 SL +V++VK S F + L Sbjct: 430 SLHS-EVILVKGSRVFNFDLVSEALE 454 >gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38] gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38] Length = 780 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 92/428 (21%), Positives = 156/428 (36%), Gaps = 19/428 (4%) Query: 40 QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99 FFAIKG ++D H +I + KG VV + V++ L AL + A Sbjct: 6 NTLFFAIKGQNHDAHLYIEELISKGVRYFVVE--YIPEHLYEKANFIIVENSLKALQQTA 63 Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 + R + + ITGS GKT KE L LS SYN+ +GVPL++ + Sbjct: 64 IGYRKKFDFPFVGITGSNGKTIVKEWLNFLLSPNHLIVRNPKSYNSQVGVPLSVLGVEGI 123 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 DFG+FE G+S E+ L ++ P ++T I AH F E K ++FE Sbjct: 124 YDFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEGFPNREAKIKEKIKLFENCTD 183 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + K +D +++ Sbjct: 184 IFLEKNESIEVLLSNKIQKH------------TWSFSDETAHLLVTQKKENNTTQLTFKN 231 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S + + A ++ + V+ + + R + Sbjct: 232 STTSFSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVGELYPVELRLQAKKGINNC 291 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 +ID+SY+ + S+K A+ L Q H + +L D+ G S++ + + +LS Sbjct: 292 LVIDDSYSLDYPSLKIALDFLEQQKLHDKK--TIILSDIFNSGIASETLYNQVKNLLSKN 349 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 I + G + L +V T + + ++VK S S F+ Sbjct: 350 KIGRIITIGE---IINKHLKDLPNVISFATTQEFLQQFNTQSFQNETILVKGSRSFNFHE 406 Query: 460 LINLLLEE 467 ++ LL E+ Sbjct: 407 IVVLLEEK 414 >gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium kluyveri DSM 555] gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016] gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555] gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 485 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 93/499 (18%), Positives = 165/499 (33%), Gaps = 55/499 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I I + I DSR + + F I G DGH +I A + G Sbjct: 1 MNLKDVLRGIDYKIIKGKNNLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V++ + V V D AL ++ II ITG+ GKTT+ Sbjct: 61 AAAIVLSKKVDFIP---DCTVIEVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 M+ L + +G+ +N+IG L + VD + Sbjct: 118 TFMVKSILETAGYKVGVVGTISNYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + V A+ T + HL EE +K +F+ + + Sbjct: 178 ASSHSLYLDRVYGVEFCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNTVNSVINIDDKY 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ KNAD K S + +G + + + Sbjct: 238 G-------ERVYEDAKGKKLTYAIDKNADLMADNLKIHSRGVNFNISYEGNTKHINLNIP 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L + G+ D++T K L GR + + N G+ ++D ++ Sbjct: 291 GKYNVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVDYAHTP 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + ++L +G+ I+V G G S + + ++ Sbjct: 351 DGLE-----NILKCAREFTKGKLISVFG----CGGDRDSTKRPIMGNIGTKFSDFAVVTS 401 Query: 408 ----GFH-VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS------- 451 G + +KD L + + E GDVVV+ K Sbjct: 402 DNPRGEEPMAIIKDILTGIKKNNYIVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQIL 461 Query: 452 -SNSCGFY--RLINLLLEE 467 + F ++ ++EE Sbjct: 462 KDRTIHFDEREIVAEIIEE 480 >gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Porphyromonas asaccharolytica DSM 20707] gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Porphyromonas asaccharolytica DSM 20707] Length = 458 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 16/446 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82 +GI D+R + P F +++G H+DG+ F + A+++G +V+ ++ S L Sbjct: 18 DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77 Query: 83 IPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + D AL++LA+ R +S+AT IAITG+ GKTTTKE++ LS+ + +A G Sbjct: 78 ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +YNN IGVPLTL ++ + F I ELG SH+G+I L L +P +IT + AHLS F Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFG 197 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E + AK+E++ L + + + L + + L + L Sbjct: 198 TPEGVIKAKSELYAYLREHSGQAFCNGED--KTLISNLNGLPTVYYNGTTSPRVTGAVLP 255 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + + Q G+S ++ +G + N+L + + D T +A++ + Sbjct: 256 TDESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTNYQ 315 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P + +I + YNANP+SM+ A+S + G R +LGDM E+ Sbjct: 316 P--RNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDCQGLNRM-LILGDMNEL 372 Query: 382 GELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 G+ ++S HI + + Y + + + G + AL A S H + + L + Sbjct: 373 GDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFAL-QARYGSEHFIFFPSATALKQYF 431 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463 +++K SNS + L Sbjct: 432 TRHQPQHSFILIKGSNSHHLSSIAEL 457 >gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila caviae GPIC] gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila caviae GPIC] Length = 448 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 111/437 (25%), Positives = 190/437 (43%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G++IDSR + P + FFA+ G DGH F+ HA Q GA VV+ D S + + Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKHAAQAGAVAAVVSKDYCGD--SFGLEL 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+D AL + + TI+ ITGS+GKTTTK LSS+ K YA SYN+ Sbjct: 83 IIVNDPTEALKEAGENQSHLFQGTIVGITGSIGKTTTKVFANTFLSSVYKVYASPKSYNS 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + VPL+L + DF I E+G+S G ++ L +V P +AVIT + + + Sbjct: 143 QLTVPLSLLMADGNEDFIILEMGVSEPGNMKDLLSIVEPEVAVITNV-VDQHAMNFSDKG 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 I E L+ + L D ++ ++ + F + + + +K Sbjct: 202 IQGIAEEKGRILQNSRVQLLPKDSPWYPHFIKQASSSEK-----FSFAFHNETADFYYKA 256 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S + +G + + ++ + + P Sbjct: 257 IRKDSVIISTPEGDIDFAISFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLPPMR 316 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 + R + +I+++YNA P +M AA+ + P G+ I +LG M E+G S Sbjct: 317 FEQSMRNGIQ-----VINDAYNACPEAMIAALDAIPH--PSESGKIILILGHMAELGNYS 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444 + H +A+ L S ++ G L ++ L S V + + G+ ++ + G Sbjct: 370 EEGHTIVAKKA-LSKASIIFFIGEKWLPIQHVLNYGSCEVSFHPSAQGIEEILKKVVQQG 428 Query: 445 DVVVVKSSNSCGFYRLI 461 D+V++K S S L+ Sbjct: 429 DIVLLKGSRSLALESLL 445 >gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] Length = 417 Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 176/392 (44%), Gaps = 19/392 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P+ ++ QA+ G + DSR + F AI G DGHDF Sbjct: 7 MMPMG-LAEIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 65 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111 + +GA +V+ ++ +P VDD + AL +LA R S T+I Sbjct: 66 VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 121 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ITGSVGKTTTK+++ LS++ +T A +GS+NN IG+PLT ++ F + E+G +H Sbjct: 122 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI LT LV P IAV+ + AHL F E IA AK+EI +GL G LN +D Sbjct: 182 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 241 Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + + + + + S+ +G+ +V G Sbjct: 242 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 301 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348 H N L + L +D L+ + FTLID+S+NA Sbjct: 302 MHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 361 Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDM 378 NP SMKA + L + + E + AVLG M Sbjct: 362 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAM 393 >gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] Length = 813 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 171/467 (36%), Gaps = 19/467 (4%) Query: 4 LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60 ++T ++ I+ + ++ + DSR I FFA G DGH +I A Sbjct: 1 MYTISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGIFFAFTG-RQDGHLYIQDA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KG ++ D + + V + L LA R R + +I ITGS GKT Sbjct: 60 YNKGVRNFILEKDTEQEVQMPDANILWVANSWTTLQSLAQHNRSRFQGPVIGITGSNGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L +S K Y SYN+ +GV L+L + + I E G+SH+GE+ L Sbjct: 120 IVKEWLFQLMSPEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P V+T I AH F+ E K +F+ E Sbjct: 180 MIKPTFGVLTNIGIAHQQGFASKLEKTEEKLRLFKDAETLIYP---------AKYLEAVQ 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S+G+ ++ ++ ++ + G + A + Sbjct: 231 IPYKPRKLSWGEEEDNQLEVYSIRKPEDGQTYVTLYYGGKTFGISVPFTDSAAME--NAI 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+++ R + ++ID+SY+ + S++ A+ L Sbjct: 289 TCVAVMLRFGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIALDFL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +Q H I +L D+ + + L +++ N++ + L G + + L Sbjct: 349 NQQHQHTNS--ILILSDIPGVTLTDEKNLNKLKRLVADRNLTQLILIGPVLRQYAEQL-- 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++ +++K + F + LL+ + Sbjct: 405 GVPFQCYASTADFIANLKDIEFRDATILLKGARDFHFEDISKLLVAK 451 >gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] Length = 813 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 172/467 (36%), Gaps = 19/467 (4%) Query: 4 LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60 ++T ++ I+ + ++ + DSR I FFA G DGH +I A Sbjct: 1 MYTISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGVFFAFTG-RQDGHLYIQDA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 KG V+ D + + V + AL LA R + + +I ITGS GKT Sbjct: 60 YNKGVRNFVLEKDAEQEVQMPDANILWVANSWTALQSLAKHNRSQFQGPVIGITGSNGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 KE L +S K Y SYN+ +GV L+L + + I E G+SH+GE+ L Sbjct: 120 IVKEWLFQLMSPEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +++P V+T I AH F+ E K +F+ E Sbjct: 180 MIKPTYGVLTNIGIAHQQGFASKLEKTEEKLRLFKDAETLIYP---------AKYLEAVQ 230 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 S+G+ ++ ++ ++ + G + A + Sbjct: 231 IPYKPRKLSWGEEEDNQLEVYSIRKPEDGETYVTLYYGGKTFGISVPFTDSAAME--NAI 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V+++ R + ++ID+SY+ + S++ A+ L Sbjct: 289 TCVAVMLRFGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIALDFL 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +Q H I +L D+ + + L +++ N++ + L G + + L Sbjct: 349 NQQHQHTNS--ILILSDIPGVTLTDEKNLNKLKRLVADRNLTQLILIGPVLRQYAEQL-- 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + ++ +++K + F + LL+ + Sbjct: 405 GVPSQCYASTADFIANLKDIEFRDATILLKGARDFHFEDISKLLVAK 451 >gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola sp. JR] gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] Length = 473 Score = 170 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 102/474 (21%), Positives = 183/474 (38%), Gaps = 25/474 (5%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-----PHYDGHDFIL 58 L L + G PQ + GI +++ P + +F +KG + IL Sbjct: 2 LDNVQTLCKVTNGVLRQGDPQQKITGIMSRCKAVKPGQVYFDVKGGPGSDEN------IL 55 Query: 59 HAVQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A+ KGA +V++ + I V V V A R + ++ +TG+ Sbjct: 56 VALDKGAVALVISKHKKKLPFNNHKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTS 115 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTTKEM+ N VP + R+ + +FE+GM+ G + Sbjct: 116 GKTTTKEMIASIFKKKWGKILKTEQNLNLPSFVPGHIMRLTAEHKAAVFEIGMNRRGHVA 175 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +++P I +IT I AH+ E + K I EG+ K G + +N DD L Sbjct: 176 KQSRVIKPMIGIITNIGQAHVGMLGSKEAVIEEKGSIIEGIPKNGYLLINADDENSGKL- 234 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + FG AD+ + + + GK ++ G H N Sbjct: 235 --DLSSFQGKTLRFGIKNKADYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHNVYNA 292 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + ++L +V + L+ F + R + LI+++YNANP S+ A Sbjct: 293 LAAIAASTLLNIEVKYIKQGLAGFRRPKLRL---QLVKGINDSLLINDTYNANPDSVIAG 349 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + VL +++ + IAVLG+M E G + H + + I ++ G + Sbjct: 350 LEVLKELA--KDRTSIAVLGNMLEQGVFTNEAHQRVGRRVQELGIDYLITIGKLARQIAV 407 Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + + +++ + V + K S + +++ L + Sbjct: 408 GARKHGMPEEKIKSFDQRYEGSFYLKKHMPHRAVCLFKGSRAVYLDKMVEYLKD 461 >gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 488 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 91/475 (19%), Positives = 171/475 (36%), Gaps = 49/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ + ++ V GI DSR+ F AIKG +DG D+I AV++G Sbjct: 1 MRLVDILKDVNYTTVKGNIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A +VV ++ I V V++ +L K+A + +I +TG+ GKT+ Sbjct: 61 AVAIVVEREVS---IDKDITVIKVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSV 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 M+ L S IG+ +N IG R+ VD + Sbjct: 118 TYMIKSILESQNNKVGLIGTIHNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + IAV T + HL ++E A+AKA++F + I ++ D Sbjct: 178 VSSHSLALNRVDECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLFRMAKTACVINIDDD 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 S + + ++G A + K + + VQ++ E+ Sbjct: 238 YSSY------MIENSNAKVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALKIP 291 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + + IL + + AL + +G+ L+ + +ID ++ Sbjct: 292 GLFSVYNSLAAISVAFILGIPLQSVKMALKD---VKIKGRFEVLDLDVPYNVVIDYAHTP 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + +++ + G++I + G G ++ V ++ Sbjct: 349 DGLE-----NLMKAFGEYNTGKKILLFG----CGGDRDKGKRPKMGEVAGKYADFVIITS 399 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +++ + E + S D DVV++ K Sbjct: 400 DNPRSEEPIKIIQEIEEGIKNTKCPYTIIEDRKEAIKYALSIAKDNDVVILAGKG 454 >gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] Length = 256 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 6/235 (2%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ A G G + + G++IDSR AP F +KG DGH FI ++ Sbjct: 4 MTLKNITAACHGTFHGDSSFLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVME 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA + D SL+ P V+ AL +A R++ ++ ITGSVGKT+T Sbjct: 64 QGALATLTEED----PSSLTCPCIHVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTST 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE + LS G++NN IG+PLT+ + + + + E+G+ H GE+ L + Sbjct: 120 KETIASVLSRKYNVLKTEGNFNNGIGLPLTIFNLTEEHEVAVLEMGIDHFGEMHELASIS 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +P I VIT I AH+ N + I AK E+F+ L ++ LN DD + Sbjct: 180 QPDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRPNASVILNGDDDKLSTVAE 234 >gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] Length = 482 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 156/473 (32%), Gaps = 45/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + + + I DSR + + F IKG DGH +I A + G Sbjct: 1 MKLKKVMNGLTYEVVKGNDDLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V++ ++ V V D AL ++ K II ITG+ GKTT+ Sbjct: 61 AAAIVISEEVE---NVPDCTVIKVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L + +G+ N+IG + + E + Sbjct: 118 TFMMKSILETAGYKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + VR A+ T + HL E AK +F+ + + Sbjct: 178 VSSHSLYLDRAYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNTINSVINIDDKY 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + + T ++ +K AD + S + + +G++ + + Sbjct: 238 GD-------KVYEDALGTKITYAINKEADLKANDLNIHSRGANFNITYRGQTAHINLNIP 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G ++ K L + GR + N G+ ++D ++ Sbjct: 291 GKYNVMNALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVDYAHTP 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + ++L GR IAV G G + + + ++ Sbjct: 351 DGLE-----NILKTAREFTTGRLIAVFG----CGGDRDNTKRPIMGKIGTELSDFAVITS 401 Query: 408 ----GFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G A+ D + + E GDV+VV K Sbjct: 402 DNPRGEEPRAIIDEIVNGVEKDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKG 454 >gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] Length = 437 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 110/420 (26%), Positives = 185/420 (44%), Gaps = 20/420 (4%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + G G ++ + D+R++A + A++G +DGHDF AV +GA ++ Sbjct: 2 IAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLL 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + +L +P V + AL ++A + +IA+TGS GKT+ K +L Sbjct: 60 VDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAI 115 Query: 130 LSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 L+ YA G+ NN IG+PL + P D D ++E+G G+I +LT + RP Sbjct: 116 LAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARP 175 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A++ IAPAHL + +A K I+ L G +N DD+F + + A + Sbjct: 176 DVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPL 235 Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + +G +A+ R+ + + + + VV G H N L G+ Sbjct: 236 QGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNVLNALAATGL 295 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L+ GR + A LID+SYNANP S+ AAI L+ Sbjct: 296 ALGAGIALPIIAAGLAQATQVAGRQIAHTLATG---AVLIDDSYNANPGSLDAAIDALAA 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 G VLGDM E+G + + H ++ ++ G A + + ++ Sbjct: 353 AP----GEGWLVLGDMRELGPEAPALHAAAGPPAGNRKLARLYALGALRPAAQRSATAAV 408 >gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Deinococcus proteolyticus MRP] gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Deinococcus proteolyticus MRP] Length = 438 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 107/449 (23%), Positives = 185/449 (41%), Gaps = 55/449 (12%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR AF A+ G G+ FI A+++GA V+ + AS ++ V Sbjct: 24 LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVLTDLPGAASRLPRTV---EVP 80 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L AL A R ++ ++ +TGSVGKTTTK + AL + YN + Sbjct: 81 DSLAALTAWAQQERAKNPL-VVGVTGSVGKTTTKSYVAAALDAHYM-----PVYNTIPAI 134 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 L + E+G+ +GE+ L LVRP + V+T+I AHL S +E IA Sbjct: 135 ACFLTEFGSSERPLVVEMGIDRVGEMDRLISLVRPDVGVLTSIGAAHLEGLSSLEVIAQ- 193 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 ++L + +G + F + + F + Sbjct: 194 --------------------EKGKILHSPRALVGNQARVWFPEQEIYGFSTPELPVQHSG 233 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + V QG + A + ++ + A+ A ++ ++ + Sbjct: 234 QDLRVNEQGADFTYRGQTVHLPNAAQVQAEAAVLGLYLAETYGVPLAAAIQRVEQVQVPS 293 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R ++ G +T+ID++YNA+P +++AA+S L GRRI+VLG M E+G + H Sbjct: 294 GRYQIHSGRYTVIDDAYNASPLAVQAALSALQNFR----GRRISVLGTMLELGPTAPELH 349 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ + G + L H H T+ L +++ + DGDV++V Sbjct: 350 AEVGRSACES-ADLCFGVGPYAELL------GHHAHR--TVPELTAALKAEVQDGDVILV 400 Query: 450 KSSNSC------------GFYRLINLLLE 466 K+S G +++ LL+ Sbjct: 401 KASRGISMTPEQRAQEGVGLETVVSELLK 429 >gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Intrasporangium calvum DSM 43043] gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Intrasporangium calvum DSM 43043] Length = 470 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 185/468 (39%), Gaps = 25/468 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M PL ++ G G ++ DSR P + A G DGHD+ Sbjct: 1 MIPLA-LTEIRDLTHGEVHGCDDPGSVVVDGVVTTDSRDCVPGSLYVARLGEFADGHDYA 59 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGS 116 AV GA V+ + + + VDDV A ++A R + I+ ITGS Sbjct: 60 PAAVAAGAVAVLGSRPVE------GVATVVVDDVQTAFGQVARGVVDRAPELRIVGITGS 113 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKT+TK++L LS+ +T A + S N IGVPLT+ R+ F + E+G +G I Sbjct: 114 SGKTSTKDLLAAVLSTAGETVAPVNSLNGEIGVPLTVCRVTPTTRFLVAEMGARGIGHID 173 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 +LT + P +A++ + AH+ F IA+AK+E+ + G LN DD + Sbjct: 174 YLTRIAPPDVAIVLNVGTAHVGEFGSRANIAAAKSELPRAVRPGGLSILNADDPLVAAMA 233 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + S A+ + E L Sbjct: 234 GGLASRVQLVGQSPEAEVRAEATILD-----ELGRAAYDLVTPRGRARVSLRLSGAHHVG 288 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + L + A A ++ R +++++YNANP SM+AA Sbjct: 289 NSLAVAAAALELGLPLAQVAAALSGAVPASRWRMEITERPDGVVIVNDAYNANPDSMRAA 348 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 + L+ + G R AVLG+M E+G + H + + I HV G + D Sbjct: 349 LDALA--AIATTGERWAVLGEMLELGSDREREHAAIGSYAAGLGIDHVVAVGDGAR-VYD 405 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A + +D + S L GDVV++KSS G L + L Sbjct: 406 APD------WVPDVDAAHDHLASRLRPGDVVLLKSSRDSGLRWLGDRL 447 >gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6] gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6] Length = 845 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 201/468 (42%), Gaps = 19/468 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T DLL A G S DSR AP E F A++ P DGHD+I A+ Sbjct: 1 MITLDDLLAA-GARLHGPAHATSFTDWSYDSRLTAPGECFVALRTPRADGHDYIPAAIAA 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA ++ + S V DD L + A A + T++ ITGSVGKTT + Sbjct: 60 GATGILCS---WPPADSAGTTVLLCDDPQTTLLRWASARLAAVQPTVVDITGSVGKTTAR 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 L+ T+ S+N+ +G+P+ +AR+ F + ELG H GEI L Sbjct: 117 RAAAAVLARRAATFQSRRSFNSFLGLPIAIARLEDQHRFAVLELGSDHRGEIARLATFFP 176 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IA++T + AHL +F +E IA+ K ++ L G +N D L ++ A Sbjct: 177 PKIALVTAVEAAHLRSFGSLEAIAAEKGDLLAALPPKGVAIINGDSPLARALMGRTKA-- 234 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++G+ ++ D R + + + + ++ G ++V IG L + + Sbjct: 235 --HTITYGQGRSCDLSGRGLRYGLDGTLLRLRWCGTEVDVHTPLIGIPGLYAALAGVAVG 292 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D+ + AL P GR + L+D+S++A P + AA+ L+ + Sbjct: 293 LACGMDLVDCVAALPHIVPVAGRLRPLPALGGAA---LLDDSFSAAPPAALAALETLAAL 349 Query: 364 SPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFH---VLALKDALP 419 H RIAV+G + ++ S+ F+ +L + + L G + Sbjct: 350 PAHR---RIAVVGALSDLPVGSEESFYRELGTRAASST-DLLILKGDWGVVTERAARQIN 405 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 +I V +T + + L GD+V+VK R+I L+++ Sbjct: 406 PNIAVQVVDTNEAALAALPPDLGPGDLVLVKGGAEARMERVIARLVDD 453 >gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteriovorax marinus SJ] Length = 455 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 168/445 (37%), Gaps = 26/445 (5%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIGSLS 82 +S DSR+ + + F + G ++DG +FI ++KG +V + S Sbjct: 23 LSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQD 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + GVD L L LA + K + ITGS GKTTTKEML LSS Sbjct: 83 VTFIGVDSPLATLQSLANKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEVH 142 Query: 140 --IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 G+ NNHIGVPLT+ P + I E+G +H+GEI L + P +I+++ AH+ Sbjct: 143 ATKGNLNNHIGVPLTILSAPTCCKYMIVEMGANHVGEISDLCEIAMPEFGIISSVGAAHI 202 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F GIE I K +++ + + T + + + ++ S + Sbjct: 203 GLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYLSQI---------SPSEVLIKF 253 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + + + + L V+I DT I A Sbjct: 254 GDSSDVDVTYDEGKIVINNVNIENVNILEKYNLSNLASAY--LLAVNIFPDKKDTFISAA 311 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 S + + + F + + S + + + VLGD Sbjct: 312 SEYRIPSLNRSEWIERNGKQIFLDAYNANPTSMESSLNSFVENMKKKGIPLDDVLFVLGD 371 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 M E+G+ ++ H +A L +V G + LP I E + L L Sbjct: 372 MNELGDYAKDEHERIARQLDGLGAKNVIFVGNYSKYYMQGLPSGI---MFEKKEDLVLRW 428 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462 + + +K+S S LI+ Sbjct: 429 SELSKERSALFIKASRSLQLESLID 453 >gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 492 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 96/477 (20%), Positives = 177/477 (37%), Gaps = 50/477 (10%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P+ DLL+ ++ H I P ++G+ DSR P+ F AIKG DG ++ A++ Sbjct: 9 PIMRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIK 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 GA VV + D+ G + V V+D A+ K+A K T+I ITG+ GKT Sbjct: 68 NGAVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFE 166 + ML L +G+ N IG L + V+ Sbjct: 125 SVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVV 184 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S IAV T ++ HL +EE A K+++F+ +K I ++ Sbjct: 185 MEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVINID 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A ++ K +VQ+Q K E+ Sbjct: 245 ------DKYSSMMIESSKGKVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLK 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ ID ++ Sbjct: 299 IPGLFSVYNALAAITVADFLGIPLRSVREALSH---VTVKGRFEPVETGRDFYVFIDYAH 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I V G G L ++ L Sbjct: 356 TPDG-----IRNIMEALKEYEAGRKILVFGA----GGDRDKSKRPLMGEVAGKYADFCIL 406 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + + E + S+ DV+++ K Sbjct: 407 TSDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 463 >gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 318 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 137/236 (58%), Gaps = 7/236 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A+KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122 A +V+ S P+ V D L AL+ +A A +IA+TGSVGKTTT Sbjct: 64 AIAAIVSEGKYK-----SFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+ML LS ++A G+ NN+IG+PLT+ + P + + I E+GM+ GEI+ L+ + Sbjct: 119 KDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKIS 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 P+IAVIT I PAH NFS + ++A AK EI G++ GT+ L+ D+ +++ L + Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSH 234 >gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens] Length = 345 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 154/345 (44%), Gaps = 9/345 (2%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + G+ DSR I F + G +DGH + ++ GAG + D + Sbjct: 5 ELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPAGA-- 62 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V VDD L AL LA A ++ ITGS GKTTTK+M+ LS+ K + G++ Sbjct: 63 -VIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYKVHKTGGNF 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NNHIG+PLT+ MP D + + E+GMS EI L+ + RP +AVIT I AHL Sbjct: 122 NNHIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQLGSR 181 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLR 261 EIA AK EI G++ G + + D+ ++ A++ ++FG + D Sbjct: 182 HEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGTFTFGLDHSNDDYPT 241 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 S+ + N++ L +++ T + Sbjct: 242 GMMFHSKGIIFT----SLLHPEEGLDLPLLGQHNVINCLAALAVARHFGITEENIRTGLT 297 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 G R + T+++++YNA+P SMKAAI L + + Sbjct: 298 GLHLTGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDALHSLKGY 342 >gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile] Length = 484 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 80/473 (16%), Positives = 149/473 (31%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +D++Q + ++ +N + DSR + F IKG DGH +I A++KG Sbjct: 1 MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A +V D+ V D + K+A +I +TG+ GKT+ Sbjct: 61 ASAFIVEEDVAIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 +L L+ K IG+ G +D + Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + T + P HL +E+ AK ++F + T +N D Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + Y++G ADF R K S+ + + Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + +L + L + + GR + + +A Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL EG+ I+V G G + L + ++ Sbjct: 354 -------LENVLKTTQQFAEGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402 Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + + + + H + S DVV++ Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITG 455 >gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-63q42] gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile ATCC 43255] Length = 484 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 80/473 (16%), Positives = 149/473 (31%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +D++Q + ++ +N + DSR + F IKG DGH +I A++KG Sbjct: 1 MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A +V D+ V D + K+A +I +TG+ GKT+ Sbjct: 61 ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 +L L+ K IG+ G +D + Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + T + P HL +E+ AK ++F + T +N D Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + Y++G ADF R K S+ + + Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + +L + L + + GR + + +A Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL EG+ I+V G G + L + ++ Sbjct: 354 -------LENVLKTTQQFAEGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402 Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + + + + H + S DVV++ Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITG 455 >gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus infantis SK1302] gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus infantis SK1302] Length = 391 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 106/400 (26%), Positives = 174/400 (43%), Gaps = 22/400 (5%) Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 P V+DVL A LA ++ + A+TGS GKTTTK+ML L++ KT Sbjct: 3 EKEVEGQPYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTFKT 62 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 Y G+YNN IG+P T+ MP D + + E+G HLG+I L+ L P A++T + AH Sbjct: 63 YKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAH 122 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 L+ F EIA K +I +G+EK G + D + L K + FG Sbjct: 123 LAFFKDRSEIAKGKLQIADGMEKGGVLLAPVDPIVEDYL------PTDKKVVRFGPGAEL 176 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + + + ++ + G + A N ++ + + +A Sbjct: 177 EIT----ELTERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVALQEGVTEEQIRQA 232 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 R + + A ++ + YNANP +MK + S I + G++IAVL Sbjct: 233 FQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLA 289 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYS------ 427 DM E+G+ S H + ++ + V G + L + HV+Y Sbjct: 290 DMKELGDQSVQLHNQMILSITPDVLDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEE 349 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + ++ SL D +++K SNS +L+ L E Sbjct: 350 DQFEAMVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 389 >gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-23m63] gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] Length = 484 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 157/473 (33%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +D++Q + ++ +N + DSR + F IKG DGH +I A++KG Sbjct: 1 MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A +V D+ V D + K+A +I +TG+ GKT+ Sbjct: 61 ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 +L L+ K IG+ G +D + Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + T + P HL +E+ AK ++F + T +N D Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + Y++G NADF R K S+ + + Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTNADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + +L + L + + GR + N ++I + Y Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGR---FETVPNDKGISVIVD-YAH 349 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + Q + EG+ I+V G G + L + ++ Sbjct: 350 TPDALENVLKTTQQFA---EGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402 Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + + + + H + S DVV++ Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVIITG 455 >gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris] Length = 494 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 122/499 (24%), Positives = 199/499 (39%), Gaps = 47/499 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V+ + +L +P V + AL ++A + +IA+TGS GKT Sbjct: 58 VARGASGLLVDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L+ YA G+ NN IG+PL + P D D ++E+G G+I Sbjct: 114 SVKALLLAILAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + RP +A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ + +G +A+ R+ + + + + + VV G H Sbjct: 234 EQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLVIPQGEAPVVLPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ GR + LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPIIAAGLAQATQVAGRQIAHTLTTGA---VLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + + H ++ ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGPEAPALHAAAGRRARNAKLARLYALGALSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ-----SSLVDGD---------------------VV 447 A V + L S D + Sbjct: 407 AAQAFGDGGRVFATHAALAAALQADLAAAASQTQTQDSSLMHEHTGAVARAAASVAPPTL 466 Query: 448 VVKSSNSCGFYRLINLLLE 466 +VK S R++ LL Sbjct: 467 LVKGSRGSAMDRIVAALLA 485 >gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 494 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 123/499 (24%), Positives = 199/499 (39%), Gaps = 47/499 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + G G ++ + D+R++A + A++G +DGHDF A Sbjct: 1 MK-LTPLSLIAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA ++V+ + +L +P V + AL ++A + +IA+TGS GKT Sbjct: 58 VARGASGLLVDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKT 113 Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + K +L L+ YA G+ NN IG+PL + P D D ++E+G G+I Sbjct: 114 SVKALLLAILAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDI 173 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +LT + RP +A++ IAPAHL + +A K I+ L G +N DD+F Sbjct: 174 AYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWF 233 Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + A ++ + +G +A+ R+ + + + + VV G H Sbjct: 234 EQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNV 293 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+ + L+ GR + A LID+SYNANP S+ Sbjct: 294 LNALAATGLALGAGIALPIIAAGLAQATQVAGRQIAHTLATGA---VLIDDSYNANPGSL 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 AAI L+ G VLGDM E+G + + H ++ ++ G A Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGPEAPALHAAAGRRARNAKLARLYALGALSAA 406 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ-----SSLVDGD---------------------VV 447 A V + L S D + Sbjct: 407 AAQAFGDGGRVFATHAALAAALQADLAAAASQTQTQDSSLMHEHTGAVARAAASVAPPTL 466 Query: 448 VVKSSNSCGFYRLINLLLE 466 +VK S R++ LL Sbjct: 467 LVKGSRGSAMDRIVAALLA 485 >gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria monocytogenes FSL F2-208] Length = 346 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 143/325 (44%), Gaps = 9/325 (2%) Query: 6 TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ + + G+ D+R I + F G DGH+F+ A + G Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ PV V+D L AL +LA + K +IAITGS GKTTTK+ Sbjct: 77 AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ + +P Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 IA+IT I AH+ EEIA AK EI G E L + G Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +FGKS+ A+ + + +E + + +E+ IG H N + + Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKR 329 + + + AL + R + Sbjct: 309 EIGIEGEKIQSALKNMERSKSRLEW 333 >gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] Length = 485 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 164/475 (34%), Gaps = 46/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+ ++ + + + + I DSR+I + FFAI+G DGH FI A++KG Sbjct: 1 MKLKEVLKKLEYNILNGNIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V + I V + AL A K +I +TG+ GKTT+ Sbjct: 61 AKVIVFDKGFENENMYKDITFIKVKNSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTS 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L +G+ N+IG L + VD+ + E Sbjct: 121 TFMIKSILEEAGFKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVME 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH + + + + + T + HL E ++K +F+ + + Sbjct: 181 V-SSHSLYLDRVYGI-EFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINSVINIDD 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + +++ K +D + + S V +G ++ H Sbjct: 239 NYG-------ERILKEIEEKTFTYSIKKYSDLKAESVRLHSRGGEFTVDFKGNKEKINIH 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L ++ + + L GR + N G+ ++D ++ Sbjct: 292 IPGEYNVSNALGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL +G+ I+V G G + + L Sbjct: 352 TPDG-----LDNVLRTARDFTKGKLISVYG----CGGDRDRAKRPIMGRIGTELSDLAIL 402 Query: 407 SGFHVL-----ALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ D + + + + ++ + DV+VV K Sbjct: 403 TSDNPRTEEPFSIIDDIVKGVTKDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKG 457 >gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus terrae PB90-1] gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus terrae PB90-1] Length = 472 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 111/475 (23%), Positives = 189/475 (39%), Gaps = 29/475 (6%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P ++ L G + +IDSR + + F AIK DGH F+ A Sbjct: 2 PSFSPAQLASWTGGRWTAQPVSSLL-AFAIDSRQLRRGDVFVAIKSEQRDGHAFLGAAEA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA +V+T A L++P V D L A +A R + ++ I+GS GKT+T Sbjct: 61 AGASAALVSTPDPA----LALPQLVVADPLRAFQAIAREHRRLFRGPVVGISGSAGKTST 116 Query: 123 KE--------MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLG 173 K + + + A G+ NNH+GVPLTL + F + E G+S G Sbjct: 117 KNLLALLLETAAASSDAHAGQVLATEGNLNNHLGVPLTLTLLDPAVHRFAVVEAGISAPG 176 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 E+ L +++P +A+IT +A AH G+ +A KA + + TG + F Sbjct: 177 EMAPLAEMIQPDVALITLVAAAHTEELGGLAGVAKEKAVLPAAVPPTGIAIFPKHCTEFA 236 Query: 234 LLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + + + + + + Sbjct: 237 AFRELDVQQMVVERADVIRPAQPPRDKVFFTVSHRDEHTVVALAYGPPPPLTFTLRRVSD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 MAQN + + L ++ + L+ + P + RG+ R L + YNANP Sbjct: 297 GMAQNAALAICAALWLGVPAESIQQRLAQWQPAKLRGELRRENGRW----LYLDCYNANP 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ASM A+ ++P E R+ VLG M E+G + +H +L L L + G H Sbjct: 353 ASMTDALEAFYGMAPTAE-PRLFVLGGMEELGREAAGYHHELGRALRLRAGDQAVVIGEH 411 Query: 411 VLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 A++ + V +E+++ + + + + V VK S +++ Sbjct: 412 APAVRAGALAAGTAPDQVRVAESLEPIAVQVAAWRGA---VFVKGSRRYALEKVL 463 >gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 329 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 8/302 (2%) Query: 5 WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T+ ++ A G + GI+ D+R + + F A++G +DG DF A++ Sbjct: 4 MTWDEIRAATGGRLLLGKMRGNDAFAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALR 63 Query: 63 KGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 GA V+ V+ + V GV D L A ++A A R++ ++A+TGS G Sbjct: 64 AGAVAVMLPEPVSDAHRKELDRTPGAVIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNG 123 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKE+ ALS +YNN IG+PLTL M + + E+GM G+I L Sbjct: 124 KTTTKELTAAALSGRGAVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAAL 183 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + P + ++T + H+ IE IA AK+E+ E + G + LN DD+ ++A+ Sbjct: 184 AAIAAPTVGIVTNVGETHMELLGSIENIARAKSELVEAIAPGGIVILNADDARVAAMRAQ 243 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A I ++G AD + + + ++ V G+ + +G H N Sbjct: 244 --AADGVRILTYGIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRG 301 Query: 299 TL 300 Sbjct: 302 AC 303 >gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] Length = 483 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 78/475 (16%), Positives = 152/475 (32%), Gaps = 48/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ ++ I VN I DSR + + F AI+G + DGH FI A++ G Sbjct: 1 MKLIQILKGLEYKKISGTLDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +++ + + S V++ AL +A +I ITG+ GKTT+ Sbjct: 61 AKVIICSKNTEFYENS---TYIKVENTRKALAIMASNFYGNPSNEIKLIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L IG+ N IG + ++++ I E Sbjct: 118 TYMIKSILEHAGCNTGLIGTIANFIGEKKIKAERTTPESLELQEMFKKMNDKNIEYCIME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + ++ + T + HL E AK +F + + + Sbjct: 178 V--SSHSLSLDRVYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMFHNAKNSIINIDD 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + T ++ + AD S + ++ + + + Sbjct: 236 FYGDRMLK-----DIPKTSTKITYSTERQADLFAENIVNHSRGAEFDLIYKETMIHINLS 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L + ++ + L GR + N GF ++D ++ Sbjct: 291 IPGIYNVYNALCSAAACLEEGISIEKVKEGLENVV-VPGRCENVTKKYNLGFDVIVDYAH 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L+ +GR I+V G G + + + Sbjct: 350 TPDGLE-----NILNTAKDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSNLSDIAII 400 Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + D + + E DV+VV K Sbjct: 401 TSDNPRTEEPMSIIDDVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKG 455 >gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] Length = 484 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 93/475 (19%), Positives = 179/475 (37%), Gaps = 46/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I + ++ ++ DSR + + F IKG DGH +I A++ G Sbjct: 1 MNLKDILKGIDYKLVQGSLDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++++ D+ + + +I V V D AL + + K II ITG+ GKTTT Sbjct: 61 ASVIIMQDDI--EVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 M+ L S K IG+ N+IG + V++ + E Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + V + + T + HL E ++K ++F +++ +N Sbjct: 179 V--SSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ + + + L K IY + ++++F+ K S+ +V L+ K E + Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L +G L ++ + ++ GR +R N + +ID ++ Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIREGIN-KVIVPGRCERTATNYNLPYDIIIDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +GR IA+ G G + + Sbjct: 352 TPDG-----LQNILETARGFTQGRLIAIFG----CGGDRDKVKRPQMGKIGTDIADIAIV 402 Query: 407 SGFH------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + ++D L + E + DV+V+ K Sbjct: 403 TSDNPRSEEPMKIIEDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKG 457 >gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 14] Length = 272 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei BCC215] Length = 300 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS +P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSASPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 91] Length = 289 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei DM98] Length = 303 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL N1-067] Length = 316 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 141/322 (43%), Gaps = 9/322 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN T +++ + + G+ D+R I P + F G DGH+F+ Sbjct: 1 MNLKKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA ++ PV V+D L AL +LA+ + +IAITGS GK Sbjct: 61 AREMGAVATFWQKNV--PNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P IA+IT I AH+ +EIA AK EI G + E L S Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAG----LNPSGILIYPYEETLL-LS 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G +FGKS ++ + +E + + +E+ IG H N + Sbjct: 234 QIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAA 292 Query: 300 LGIVSILTADVDTAIKALSVFH 321 + + + AL Sbjct: 293 MLAAREIGIEGKKIQTALKNME 314 >gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] Length = 494 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 151/473 (31%), Gaps = 43/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL +I + G + I DSR + F I G DGH F A GA Sbjct: 6 LQTLLTSIPAYRTSQDLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGAT 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ ++ +SIPV V D A+ LA K +I +TG+ GKTT Sbjct: 66 AILAEKEI-----DVSIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTH 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMS 170 ++ + IG+ IG + D + +S Sbjct: 121 LVEQIVRDAGSETGLIGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYD 228 ++ T+ IAV T ++ HL +EE A AK+ G Sbjct: 181 SHALVQGRTYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAI 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + ++G K ADF S + ++ +V I Sbjct: 241 INQDDPVSQRMKTATAAPVITYGIDKAADFGATDVMVTSSGTTFKLHTPDGDFDVRIKMI 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L L L + AI +L GR + FT+I + Y Sbjct: 301 GKFSIYNCLAALATSYALEIPIHQAITSLEKVQGVAGR---FEIVDAGQDFTVIVD-YAH 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P + + + + V + G+ + +A++ Y V+ S Sbjct: 357 TPDGLLNVLETIEEFKRSR------VFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSD 410 Query: 409 ----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ LP + + + GDV+++ K Sbjct: 411 NPRSEDPEAIIQDMLAGLPANAVYQVRTDRKEAITYAVNEAQAGDVILIAGKG 463 >gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei B7210] Length = 297 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 9] Length = 298 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 7894] gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 112] Length = 289 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ +A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 482 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 95/475 (20%), Positives = 175/475 (36%), Gaps = 50/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ ++ H I P ++G+ DSR P+ F AIKG DG ++ A++ G Sbjct: 1 MRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + D+ G + V V+D A+ K+A K T+I ITG+ GKT+ Sbjct: 60 AVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 ML L +G+ N IG L + V+ + Sbjct: 117 TYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S IAV T ++ HL +EE A K+++F+ +K I ++ Sbjct: 177 VSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVINID-- 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++G A ++ K +VQ+Q K E+ Sbjct: 235 ----DKYSSMMIESSKGKVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIP 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + + L + + +ALS +G+ + F+ ID ++ Sbjct: 291 GLFSVYNALAAITVADFLGIPLRSVREALSH---VTVKGRFEPVETGRDFYVFIDYAHTP 347 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + +++ + + GR+I V G G L ++ L+ Sbjct: 348 DG-----IRNIMEALKEYEAGRKILVFGA----GGDRDKSKRPLMGEVAGKYADFCILTS 398 Query: 409 FHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +++ + + + E + S+ DV+++ K Sbjct: 399 DNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 453 >gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium novyi NT] gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium novyi NT] Length = 483 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 48/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL+ ++ + + V+ I DSR I+ + F AI+G + DGH FI A+ +G Sbjct: 1 MKVNELLKGLEYEILNGDLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V + ++ I V++ AL +A +I ITG+ GKTT+ Sbjct: 61 AKVIVCSKEIEIK---KGITYIKVENTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L S + IG+ +N IG + ++++ + E Sbjct: 118 TYMIKSILESAGHSTGLIGTISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + + T + HL E AK +F+ + + + Sbjct: 178 V--SSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNSIINIDD 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + ++ K AD + + + + + K + Sbjct: 236 TYGERI-----LNDVPDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKDKETHINLS 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L + G ++ K L GR + + GF +ID ++ Sbjct: 291 IPGIYNVYNALCSAGACLSEGISMEDVKKGLESVV-VPGRCENATKDYDLGFDVIIDYAH 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +GR I+V G G + + + Sbjct: 350 TPDGLE-----NILETARDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSDMSDIAII 400 Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +KD + + + E GDV+VV K Sbjct: 401 TSDNPRTEEPSQIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKQGDVIVVAGKG 455 >gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216] gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216] Length = 790 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 94/469 (20%), Positives = 170/469 (36%), Gaps = 48/469 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFIL 58 M + ++ + G IG V + DSR+ + E F A+KG ++D H FI Sbjct: 1 MKYM--LSEIARICGGELIG--EDLPVARVLTDSRNCSFGEEPLFVAMKGTNHDSHAFIG 56 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 V++ + V + AL +LA R R K ++ ITGS G Sbjct: 57 EMVRRDVKAFLAERKT---QLPAGCGCVVVPSAIAALQQLAAHHRTRFKGRVVGITGSNG 113 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT KE + + + K + SYN+ +GV L+L + D + + E G+S GE+ L Sbjct: 114 KTVVKEWIAQQIPAGVKYFRSPKSYNSQLGVALSLLMIEGDEELALIEAGISCPGEMVRL 173 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++RP + T+I AH NF+ +EE ++ K + +G L + Sbjct: 174 ERMIRPDTVIFTSIGEAHQENFTSLEEKSAEKLVLAKGARTIIYH-------GGSSLLER 226 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++ + E + G+ A + Sbjct: 227 M-----------------------IRTLYGGRQLQDAAEYPLPEQLPAGVLESGAGRVDA 263 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L R LID++YN++ S+ A+ Sbjct: 264 QLVGAFCRVMGFPDPDFGR-----IRPVAMRLELKEGINGSLLIDDAYNSDINSLSIALD 318 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L ++ +L D+ + G + ++A +++ +S + G + Sbjct: 319 YLHNMAA--GRPMTLILSDIEQSGVEDGVLYGEVARLVAAAGVSRLIGVGDRIRNA--GA 374 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + T D L ++ V G VV++K S F R+ + L + Sbjct: 375 NFACDSAFYRTTDELLRNLRRDDVAGRVVLIKGSRDSHFERVSHALERK 423 >gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-66c26] gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CIP 107932] gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-76w55] gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-97b34] gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-37x79] gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CD196] gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile R20291] gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-32g58] gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile CD196] gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile R20291] Length = 484 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 79/473 (16%), Positives = 149/473 (31%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +D++Q + ++ +N + +SR + F IKG DGH +I A++KG Sbjct: 1 MKLNDIIQGLDIINVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A +V D+ V D + K+A +I +TG+ GKT+ Sbjct: 61 ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 +L L+ K IG+ G +D + Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + T + P HL +E+ AK ++F + T +N D Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + Y++G ADF R K S+ + + Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + +L + L + + GR + + +A Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL EG+ I+V G G + L + ++ Sbjct: 354 -------LENVLKTTQQFAEGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402 Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + + + + H + S DVV++ Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITG 455 >gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 496 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 96/472 (20%), Positives = 163/472 (34%), Gaps = 45/472 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L A+ + P V GI+ DSR++ P + F I G H D H FI A+++GA VV Sbjct: 1 MLSALDPVQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVV 60 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLT 127 G + V D AL+ LA ++ +TG+ GKTTT ++ Sbjct: 61 TQRPWAVPTGIGAA---VVPDARLALSALADRFYGHPSRALRMVGVTGTNGKTTTAFLVE 117 Query: 128 IALSSIKKTYACIGSYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGM 169 + K IG+ +G P T+ R + + E+ Sbjct: 118 AIARTAGKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEV-- 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + T R +AV T + HL +E +AKA +F GL+ +N DD Sbjct: 176 SSHALEQRRTDHCRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAAAVVNIDD 235 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L + A ++G S+ AD + + + E Sbjct: 236 PYGRRLAEEIPAG--VRTLTYGFSEGADIRAEDVHLTGPGARYRLITP--VGEADVEAPH 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+ + V A + A++ +G R+ FT++ + Y Sbjct: 292 LFGTYNVSNAMAAVGAGLALGFSLQDAVAALGTAKGAPGRFERIDEGQDFTVVVD-YAHT 350 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P + +S +++I R I V G G+ S D+ + Y + L+ Sbjct: 351 PDGFEKLLSDVARIK-EPGSRVIMVFGSA---GQRDPSKRPDMGRIAGEY-CDVLVLTEE 405 Query: 410 H---------VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + +H E GD+V++ Sbjct: 406 DPRTEDAMEIARQIASGVARDEVEIHLIEDRVEAIREAIRMARTGDIVLITG 457 >gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105] gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105] Length = 1024 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 119/476 (25%), Positives = 196/476 (41%), Gaps = 33/476 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSI-----APQEAFFAIKGPHYDGH---- 54 W + + G I P +GI + P + A++ +G Sbjct: 565 WDAEQIARVTGGIWIKSPPDSWRPSGIC-----VWESGFRPNDI-VALRSESENGGLSAD 618 Query: 55 DF-----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 F + +AV + + V + V V + A+ + AR Sbjct: 619 SFKRLSPLPNAVM------ITSGTQVPHTLPTTAGVLVVKSIHQAVIFMGRHARRLFTGK 672 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 ++ +TGS GKTTT ML A + A G+ N GV LA M D+ I E+ + Sbjct: 673 LVGVTGSAGKTTTVAMLKHAFNDSGHISATRGNANLPYGVAWNLASMESGTDYMILEIAI 732 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G ++ L RPH+AV+T I AHL IE IA KA IF GL G +N D Sbjct: 733 ---GRMKESAVLARPHVAVVTNIGSAHLEFHKTIETIAKRKARIFWGLVDGGIAVINRDT 789 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 F+L+ +++ + I ++G+ + +L ++ ++V+ + Sbjct: 790 ECFDLILHEANKVKAVVI-TYGEHSESAVRLININDKDKEVEIQVEGRIYIFGSKVLSKH 848 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + + I +D +K L F P GRG+ + ++ +IDESYNAN Sbjct: 849 HISNMLCTAAVAIAL--DLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNAN 906 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P SM+AAI + + + I VLGDM ++G+ ++ H+ L + I V L G Sbjct: 907 PLSMQAAIQGARTTARNRSSKLILVLGDMLQLGDQTEKLHLSLLPEILSPEIRLVVLVGE 966 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + LK + V ++++ + + DVV+ K SNS L++ L Sbjct: 967 QMALLKGHITDHAEVIAVDSVEDALEPLIFGIRANDVVMAKGSNSINLNYLVDQLR 1022 >gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans PD1222] gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222] Length = 1020 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 137/486 (28%), Positives = 219/486 (45%), Gaps = 38/486 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSI-------------------APQEA- 42 LWT L Q G + FV ++ SR + E Sbjct: 536 LWTAEQLEQVTGGKWLVPPSDAWFVCSVTHKSRQLDNWNVSAPKLLAVIDRRMAMKHELS 595 Query: 43 -FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101 F A G H+D HD + A+Q +V + P+ V D L AL +L VA Sbjct: 596 DFTA--GKHWDIHDQLP-ALQGRIAAAMVARPVEGLAP--GFPLLQVPDPLHALIQLGVA 650 Query: 102 ARLRSKATIIAITGSVGKTTTK-EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R R K ++A+TGS GKT+ ++ K +YN+ +G+ LA P Sbjct: 651 GRNRLKGHVVAVTGSAGKTSQSLMLMAAMAKDRKVIGNSALNYNSRVGILHLLANTPPST 710 Query: 161 DFGIFELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 D + E ++ + +F +RP I ++T IAP+H+ +E +A KA + EG+ Sbjct: 711 DLVVVEAAVTAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSGQGLETVARRKANLVEGIA 770 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 GT+ LN + F+++ ++ + + +FG ++AD +L + Q + + + G Sbjct: 771 PGGTLLLNREIDFYDVFLDRAKQRDLCVV-TFGAGEDADLRLVGYDQATGRVKARLPGGG 829 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + G HMA N L +G+ +L D+ ++ L F P EGRG R Sbjct: 830 LL-DYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPAEGRGAVSRVEFEGCP 888 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T++D+SYNANP SM+AA+S + + GRRI +LGDM E+G+ + +H LA + Sbjct: 889 LTVVDDSYNANPVSMQAALSTFAGMKV--AGRRILILGDMAELGKDASRYHRGLAAQILK 946 Query: 399 YNISHVWLSGFHVLALKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 V L G + L D L +S + ++ L + L GD V++K+SNS Sbjct: 947 IRPDEVLLCGPLMQELWDELSKSGAGRVDGAHYPRVEVLLSNLAGHLRSGDTVLLKASNS 1006 Query: 455 CGFYRL 460 G R+ Sbjct: 1007 VGLGRI 1012 >gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Coraliomargarita akajimensis DSM 45221] gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Coraliomargarita akajimensis DSM 45221] Length = 457 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 110/472 (23%), Positives = 179/472 (37%), Gaps = 29/472 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQK 63 W L GH +G + D+R + + F A+ G DGHDF+ A+ Sbjct: 4 WDPSQLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGAR-DGHDFVEQALAA 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GAG +V+ + L IP V+D L A+ + A R ++ +TGS GKT+TK Sbjct: 63 GAGSALVSRPL-----DLPIPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTK 117 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182 EML + L ++NN IGVP+TL + + +F + E G++ GE+ L ++ Sbjct: 118 EMLRLVLGESVAHATAG-NWNNRIGVPMTLFGLDSERQEFAVIEAGINQPGEMNHLGEMI 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + V+T I AHL +E IA+ K+++ + + L + + Sbjct: 177 AADVVVVTAIEAAHLELLQTVETIANEKSQLMAHARPSALLILPAELLNYAAFNRYRARA 236 Query: 243 GIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + R S G E + +N + + Sbjct: 237 VAVVEAGSPVPEGVLSTVSYRFEGPRIVLSGEYFAAVGGRCEFQLASQSRGIRRNAALAM 296 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++L + + + P RG+ A Q + YNANPASM A+ Sbjct: 297 VTAAVLGQPTKVSRVGIENWQPSGDRGRLIESAGRQ----FYVDCYNANPASMADALDAF 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLAL 414 + P E R VLG M E+G + H + E V+L G AL Sbjct: 353 AHSVPD-EVPRCYVLGAMNELGADAPRLHRESIEGHDFRPQDRVYLVGPQALLAGYAQAL 411 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-NLLL 465 + A + E + + +L +K S S +L+ L Sbjct: 412 EKAGSQLSFGEKVENFESEIADFKGAL------FLKGSRSYRLEQLLPEALR 457 >gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] Length = 483 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 154/473 (32%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L+++ I + + I DSR + + F I+G DGH + A G Sbjct: 1 MNLNLILKSLGYSFIKED-KKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL +A II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEELSYYKDCTIIKVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V A+ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G KN D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL+ GR + N G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403 Query: 409 FHVL------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L + E + DV+VV K Sbjct: 404 DNPRTEDPTLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456 >gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS] gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS] Length = 1299 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 210/476 (44%), Gaps = 34/476 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFA-------------IKGPH 50 H+L + QG + P + ++ + + PQ ++G + Sbjct: 426 LNAHELAEITQGVWEVMPPDGWTMKAVAFVKKRLEPQALVLPHCRTYRYGVDRDTVRGLN 485 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110 +G+ + A +P V V AL LA+A R I Sbjct: 486 GNGYALLADA--------------TPLAFPHGVPRLKVASVRNALTNLALATRASYPGRI 531 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A+TGS GKT+T M+ L ++N GV +A + + + E+ S Sbjct: 532 VAVTGSAGKTSTCNMIEDLLQVFGVPKRPTKNFNTFDGVNGEVANLTNEA-IAVIEVAAS 590 Query: 171 HLGEIRFLTHLV-RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L + V RP +A+IT+I AHL F + +A K+ +F+ + + + D Sbjct: 591 FLSQRGGPRPNVLRPEVAMITSIGEAHLEYFGSPQGVAEVKSNVFDLMSRGTAVIPR-DA 649 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ + ++ A G T+ SFG +AD L + E+ + +G Sbjct: 650 DTYDYMVQRARAAGATTV-SFGAHPSADAHLLSYSAADGVVEAEIFGERI--TYELGALG 706 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H A+N + LG+V+ L D A AL+ GRG + G FTLID++YNAN Sbjct: 707 RHFARNSVGALGVVAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNAN 766 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P+S++AAI +LS+ + GRRIAVL DM E+G S+ FH LAE L I V+L G Sbjct: 767 PSSVRAAIEMLSERATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGD 826 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + AL D LP I Y T+DGL + DGDVV+ K SN ++++ Sbjct: 827 QMRALWDDLPSEIRGQYYPTVDGLQAALDREFADGDVVLFKGSNGTELHKVVAHFK 882 >gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudonocardia dioxanivorans CB1190] gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudonocardia dioxanivorans CB1190] Length = 488 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 116/496 (23%), Positives = 187/496 (37%), Gaps = 51/496 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF---- 56 M + D+ A G V + DSR+I P F A+ G DGHDF Sbjct: 1 MIEM-RLADVAAATGGRLHRASGDERVTAVEFDSRAIGPGGLFLALPGERVDGHDFAAAA 59 Query: 57 --------------------ILHAVQK-GAGLVVVNTDMVASIGSLSIPVFGVD----DV 91 + A + GAG + D + ++ + + D Sbjct: 60 VAAGAAGVLAARAVDAPAVVVPPAEARSGAGTYLAEHDPDGAGAAVLAALARLARHNVDA 119 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L A ++ +TGS GKT+TK++L L+ + T A GS+NN +G P Sbjct: 120 LTAGG--------PPGLAVVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELGHPW 171 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 T R + EL G I L + P I V+ + AHL F E IA AK Sbjct: 172 TALRADASTRHLVLELSARGPGHIAALCRVAPPRIGVVLNVGRAHLGEFGSPEAIAQAKG 231 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 E+ E L G + ++ + + S G+S A + + ++ Sbjct: 232 ELVEALPAGGDGGVAVLNADDPAVIG-MAPRTAARLVSVGRSAGATVRAVDVGSEAGRAR 290 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + +V +G H N L + L A D+ +L P R Sbjct: 291 FRLVSPAGEADVALRLVGTHHVGNALAAAAVALELGATPDSVAASLGAAGPV--SRWRME 348 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 A T+++++YNANP SM+AA++ L+ + R AVLG M E+G + H + Sbjct: 349 VADRADGVTVVNDAYNANPESMRAALTALTDL--GRGRRTWAVLGRMAELGAQEAAAHAE 406 Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +A + + G + +++ + GDVV+VK+ Sbjct: 407 VAAAAGELGVGTLLAVGEPGY--------GSAARHVADPAAALALLRAEVTPGDVVLVKA 458 Query: 452 SNSCGFYRLINLLLEE 467 S + G R+ LL++ Sbjct: 459 SRAVGLDRVAAALLDD 474 >gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL S4-171] Length = 309 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 9/317 (2%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN T +++ + + G+ D+R I P + F G DGH+F+ Sbjct: 1 MNLKKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQ 60 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 A + GA ++ PV V+D L AL +LA+ + +IAITGS GK Sbjct: 61 AREMGAVATFWQKNV--PNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+++ + + K + G++NNHIG+P T+ MP D + + E+GM+H EI L+ Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +P IA+IT I AH+ +EIA AK EI G + E L S Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAG----LNPSGILIYPYEETLL-LS 233 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G +FGKS ++ + +E + + +E+ IG H N + Sbjct: 234 QIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAA 292 Query: 300 LGIVSILTADVDTAIKA 316 + + + A Sbjct: 293 MLAAREIGIEGKKIQTA 309 >gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] Length = 484 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 94/475 (19%), Positives = 178/475 (37%), Gaps = 46/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I + ++ I+ DSR + + F IKG DGH +I A++ G Sbjct: 1 MNLKDILKGIDYKLVQGSLDKEISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++++ D+ + + +I V V D AL + + K II ITG+ GKTTT Sbjct: 61 ASVIIMQDDI--EVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 M+ L S K IG+ N+IG + V++ + E Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + V + + T + HL E ++K ++F +++ +N Sbjct: 179 V--SSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ + + + L K IY + ++++F+ K S+ +V L+ K E + Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L +G L ++ ++ GR +R N + +ID ++ Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIKNGIN-KVIVPGRCERTATNYNLPYDIIIDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +GR IA+ G G + + Sbjct: 352 TPDG-----LQNILETARGFTQGRLIAIFG----CGGDRDKVKRPQMGKIGTDIADIAIV 402 Query: 407 SGFH------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + ++D L + E + DV+V+ K Sbjct: 403 TSDNPRSEEPMRIIEDILVGIEKDNYEIIENRKDAIKKAMDIAKENDVIVIAGKG 457 >gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] Length = 487 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 83/478 (17%), Positives = 150/478 (31%), Gaps = 48/478 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L I+ I ++ + DSR I + F AIKG + DGHD+I AV+KG Sbjct: 1 MKLNKILNGIEHKIINGKNDLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+V + + I V++ + LA +I ITG+ GKTTT Sbjct: 61 ATAVIVEKKLKKYL--SGITYIEVENTRKEMAVLAKNFFANPLADIDLIGITGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDV---------------DFGIFE 166 ++ L N G ++ R + + + E Sbjct: 119 AYLIYNILRKNSFKTAMFGTIKNIIAGEEISATRTTPESLDLYRYFSQAKTAGVQYIVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + H + +AV T ++P HL + AK+++F L + +N Sbjct: 179 V--SSHALDLYRVHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQLSPDASAVIN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + K ++NAD + +K S Sbjct: 237 LDDKNSGFMLEK---SKAHNFKYSLSNQNADLYCQNYKLKQN-SLNYQSQGLIKRNFQLK 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + V +L D + +L GR + + Sbjct: 293 LGGIFNIYNSLAAVLSVFLLGISADKIVNSLEEIKGVPGRFELINAGQDFQLIVDYA--- 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + + + R+ VL G + L+ N +V+L Sbjct: 350 -----HTPDGMENVLEAAKEITKNRLIVL---FGCGGDRDRSKRPVMAKLAEDNADYVFL 401 Query: 407 SGFHVL---------ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + +K S + + + D++++ Sbjct: 402 TNDNPRSEDPEFILSEIKSGFSNSFSNYEVISDRKKAIVEAINFAKKDDIILILG-RG 458 >gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] Length = 480 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 85/460 (18%), Positives = 163/460 (35%), Gaps = 39/460 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 P + G+S DSR++ P +F + G DGHDFI A++ GA +V + +++ Sbjct: 5 KLFKNAPTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKELL- 63 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 + V+DV A+NK+A + K + +TG+ GK+T ++ ++ Sbjct: 64 -NMASGAVYIRVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMINDKT 122 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSHLGEIRFLTHL 181 + + L D F L +S G + Sbjct: 123 PCGYIGTIAIKYGDIELQPNLTTPDALFLQSKLADMVRVGMKACALEVSSHGLAQHRVDG 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + A+ T + HL +E AK+ +F+ L K + + D Sbjct: 183 ISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDEKYEALKDCSK 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + S+G +K AD++ K S+ + ++ G + + +G N+L + Sbjct: 243 A---RVVSYGINKEADYRAINIKMSSQGTQFDLVYSGHMYPIKTNLVGNFNVYNLLAAVS 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D+D I+ S EGR +R C Q + ++D ++ + Sbjct: 300 ALNETGYDLDKIIEKCSHIAQVEGRMERIDC--GQPYNVIVDFAHTPDGMEKMMQFGRSI 357 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 + H IAV G + L+ ++ ++ + D Sbjct: 358 TMPGHR---LIAVFGSAG----KRDVHKRKVFGELADKYCDYIIVTEDDPRDEDPKEIAD 410 Query: 417 ALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I + + SS +GD V++ K Sbjct: 411 QIKSGIQNTLHVFVQDRYEAIHQAISSAQEGDTVLLLGKG 450 >gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 484 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 92/475 (19%), Positives = 177/475 (37%), Gaps = 46/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I + ++ ++ DSR + + F IKG DGH +I A++ G Sbjct: 1 MNLKDILKGIDYKLVQGSLDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++++ ++ + + +I V V D AL + + K II ITG+ GKTTT Sbjct: 61 ASVIIMQDEI--EVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 M+ L S K IG+ N+IG + V++ + E Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + V + + T + HL E ++K ++F +++ +N Sbjct: 179 V--SSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ + + + L K IY + ++++F+ K S+ +V L+ K E + Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L +G L ++ ++ GR +R N + +ID ++ Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIKNGIN-KVIVPGRCERTATNYNLPYDIIIDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +GR IA+ G G + + Sbjct: 352 TPDG-----LKNILETARGFTQGRLIAIFG----CGGDRDKVKRPQMGKIGTDIADIAIV 402 Query: 407 SGFH------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + D L + E + DV+V+ K Sbjct: 403 TSDNPRSEEPMRIIDDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKG 457 >gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis MSMB43] Length = 269 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 ADRGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G++NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGEPARLATAGNFNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETDT 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234 >gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168] gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus subtilis subsp. natto BEST195] gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] Length = 494 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 88/462 (19%), Positives = 161/462 (34%), Gaps = 46/462 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + I +DSR + F +KG DGHDF AV+ GA +V ++ Sbjct: 16 VNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREV---- 71 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +++PV V L AL+ L+ A + K +I ITG+ GKT+T M+ L K Sbjct: 72 -DVNVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130 Query: 137 YACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTH 180 IG+ IG + T +M D I E+ SH + + Sbjct: 131 TGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEV-SSHALSLGRVHG 189 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 IAV T + HL ++E A + G + + A Sbjct: 190 C-DYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAY 248 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++G +AD + ++ + ++ + + +G N+L Sbjct: 249 FEKVTAAHISTYGIKNDADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYNVLA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + +A+ H GR + Y P S++ + Sbjct: 309 AVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVD----YAHTPDSLENVLE 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414 + EG+ V+G G+ ++ +A++ ++ S A+ Sbjct: 365 TCRDM---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAI 418 Query: 415 ---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + + H + F ++ GDVV++ K Sbjct: 419 LRDMEAGVENAYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460 >gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73] gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73] Length = 356 Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + ++ + P VDDVL A +LA ++ + A+TGS GKTTTK Sbjct: 62 GAAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L R Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G+ + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADSIVEDYL------PT 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N ++ + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +A F E R ++ + YNANP +MK + S I Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342 Query: 364 SPHGEG 369 + G Sbjct: 343 PANEGG 348 >gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] Length = 493 Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 90/479 (18%), Positives = 169/479 (35%), Gaps = 48/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I I + G+ DSR I P + FFA KG DG FI A++KGA Sbjct: 3 LSQLLRGMN---ISIATDPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAA 59 Query: 67 LVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 ++V D + S SIP+ + + L LA +I ITG+ GKT+ Sbjct: 60 AILVEPDENYTIHLKSSSIPIIALHHLTSQLGSLAARFYGYPSRYLPVIGITGTNGKTSC 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------- 166 L +L ++++ IG+ N G L R + I Sbjct: 120 THFLADSLQKLQRSCGVIGTLGN--GFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVV 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + + +A +T + HL ++ A AK FE L I LN Sbjct: 178 MEVSSHRLAQKRLNGTEFSVAALTNLTRDHLDYHKTMDAYAKAKRSFFE-LPGVQHIVLN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQGKSMEV 283 DD + +L + + YS + + + + K Q ++ ++ +V Sbjct: 237 ADDPYAQLWLTEFEKQLPISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDV 296 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 A N+ L ++++L + + + V + R + +G ++ Sbjct: 297 FIENQFLMGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFRVKGKAIVVV 356 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + A VL + H G+ + G G L ++ H Sbjct: 357 DYAHTPDA----LQQVLQALRSHCRGQLYCLFG----CGGDRDKGKRPLMAAIAEEGADH 408 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + ++ + ++Y + + D+V++ K Sbjct: 409 IIVTNDNPRYEDPFQIFQDIRQGFKGNKAIYYEPERKKAIAYALKAAQPSDIVLIAGKG 467 >gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941] gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941] Length = 849 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 115/469 (24%), Positives = 194/469 (41%), Gaps = 21/469 (4%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL A+ G G S DSR E F A++ P DGH +I A+ Sbjct: 6 MIDLDDLL-AVGGRLTAPPVTRRFTGFSYDSRLTGVGELFLALRTPRDDGHAYITDALAS 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA +V T S + V DD + A + ++ +TGSVGKT+T Sbjct: 65 GAAGIVCATP---PTESANATVIIADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTSTT 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + L+ I T+ S+N+ IG+P++LAR+ D F + E G ++ GE+R LT L Sbjct: 122 RAIAAVLAGIAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELRRLTTLFP 181 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAV+T+ +P LS F + + + E L G LN DD L+A + A Sbjct: 182 PQIAVVTSASPMRLSAFGSVAGLTREFGALVEALPADGWAVLNGDDPTVAALRAVTLAQV 241 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +FG D + + + + + + G S++ +G L +G+ Sbjct: 242 L----TFGAGGGCDLRAETLRFGLDGTQVRLSYGGASVDAAIPLLGEPAVGAALAAVGVG 297 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ A L+ P GR R + L+D++ A PA A ++ L + Sbjct: 298 LACGMSLEQAAARLAHIEPPAGR---LRPHPARNGAILLDDTVGAEPA---AMLAALRTL 351 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFH---IDLAEVLSLYNISHVWLSGFH---VLALKDA 417 + RRIAVLGD+ + ++ + + + + G V+ Sbjct: 352 AALPARRRIAVLGDLPADSDDPRNEKNVCTAIGTLAAQV-ADVLIWKGDAGTSVIHAARQ 410 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + + T+ + S +GD+++V + RL+ L+ Sbjct: 411 IRPDLPATIVHTIAAALEAVPSDTGEGDLILVCGGAAARLERLVAALVA 459 >gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 397 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 109/412 (26%), Positives = 176/412 (42%), Gaps = 24/412 (5%) Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120 G + +V + A I V D AL +L R ++ + +IA+TGS GKT Sbjct: 3 ANGCQVAIVERPIDAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKT 57 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS + T G+ NN +GVP+ L + + + + ELG +H GEI + + Sbjct: 58 TTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSK 117 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V+PH+A I I AHL F G + I AK+EI+ + G + D F ++ Sbjct: 118 IVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIRE--- 174 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A I SFG D + + + + ++ S V G H QN + Sbjct: 175 AAKSHQIMSFG--AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAV 232 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 L ++ +K L+ +GR + + ID++YNANP SM Sbjct: 233 AFALALGVSLEDIVKGLAQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAA 284 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 +Q+ G ++ V+GD+ E+G+ S H DL L+ + H+ G A + Sbjct: 285 AQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGL 344 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467 S + +T F+ + + + K S L+ L+E+ Sbjct: 345 HSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 396 >gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] Length = 483 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 161/475 (33%), Gaps = 48/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ + ++ VN + DSR I + F AI+G + DGH FI A++ G Sbjct: 1 MKLIQILKELDYTNLNGTLDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V + D + S V++ AL +A K +I ITG+ GKTT+ Sbjct: 61 AKVIVCSKDTE---INESCTYIKVENTRKALAIIASNFYGNPSNKIKLIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L IG+ N IG + ++++ I E Sbjct: 118 TYMIKSILEHAGCNTGLIGTIANFIGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + V T + HL E AK +F + + Sbjct: 178 V--SSHSLSLDRVYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFNNAKNSIINI-- 233 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DDS+ E + +K ++ + AD + + ++ +G ++ + Sbjct: 234 -DDSYGERMLKDIPNTNLKV--TYSTERQADLVANNIVNHARGAEFDLIYKGTTIHINLS 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L + G ++ + L GR + N GF ++D ++ Sbjct: 291 IPGIYNVYNALCSAGACLEEEISIEKVKEGLENVV-VPGRCENVTKKYNLGFDVIVDYAH 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L+ +GR I+V G G + + + Sbjct: 350 TPDGLE-----NILNTAKDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSDLSDIAII 400 Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + D + + E DV+VV K Sbjct: 401 TSDNPRTEEPMSIIDDVVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKG 455 >gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] Length = 499 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 77/464 (16%), Positives = 143/464 (30%), Gaps = 46/464 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + ++G+ +DSR + P FFA+ G DG FI AV +GA +V + + Sbjct: 17 VKGSLDRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVTQK--MPAH 74 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + V V D L ++A T+I +TG+ GKTT +L L+ ++ Sbjct: 75 PPGKVTVIQVADARATLARVAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGDQRV 134 Query: 137 YACIGSYNNHIGVPLTLARMPV---------------DVDFGIFELGMSHLGEIRFLTHL 181 + + R + E+ S G + Sbjct: 135 GLLGTINYDLGARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEV--SSHGIDQQRVAG 192 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL---KAK 238 ++ AV T + HL ++ K +F G + + + Sbjct: 193 LQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYGVTLAASL 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + +FG++ AD + S + G +ME+ IG + N+L Sbjct: 253 KREHQSAKLVTFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLLA 312 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L D + L F GR + ++ + + + A + Sbjct: 313 AIAAAWGLGRDPFVFLARLRAFKGVPGR---MERIDEGQPYNVLVDYAHTDDA----LRN 365 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 L + GR V G G L + + + A Sbjct: 366 ALGMLRAITPGRLFVVFG----CGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLPQ 421 Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + + + E + GD +++ K Sbjct: 422 IFDDMKAGVLAPEKITWIEDRRRAISLALDAAKAGDCLLIAGKG 465 >gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS] gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS] Length = 851 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 126/395 (31%), Positives = 187/395 (47%), Gaps = 6/395 (1%) Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 D +P V V AL LA+A R I+A+TGS GKT+T M+ L Sbjct: 45 ADATPLAFPHGVPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQ 104 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV-RPHIAVIT 190 ++N GV +A + + + E+ S L + V RP +A+IT Sbjct: 105 VFGVPKRPTKNFNTFDGVNGEVANLTNEA-IAVIEVAASFLSQRGGPRPNVLRPEVAMIT 163 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 +I AHL F + +A K+ +F+ + + + D ++ + ++ A G T+ SF Sbjct: 164 SIGEAHLEYFGSPQGVAEVKSNVFDLMSRGTAVIPR-DADTYDYMVQRARAAGATTV-SF 221 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G +AD L + E+ + +G H A+N + LG+V+ L D Sbjct: 222 GAHPSADAHLLSYSAADGVVEAEIFGERI--TYELGALGRHFARNSVGALGVVAALGLDW 279 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A AL+ GRG + G FTLID++YNANP+S++AAI +LS+ + GR Sbjct: 280 RRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERATPPRGR 339 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430 RIAVL DM E+G S+ FH LAE L I V+L G + AL D LP I Y T+ Sbjct: 340 RIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEIRGQYYPTV 399 Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 DGL + DGDVV+ K SN ++++ Sbjct: 400 DGLQAALDREFADGDVVLFKGSNGTELHKVVAHFK 434 >gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 488 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 88/475 (18%), Positives = 155/475 (32%), Gaps = 49/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++ ++ + + GI DSR + F I G ++DGH FI A+++G+ Sbjct: 5 LRELIKDLKEKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSR 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +VVV D+ + + V V + AL LA K ++ I G+ GKTTT Sbjct: 65 VVVVEKDV---KTAKDVTVIKVPNTRYALAVLANRFYGYPSKKLQVVGIAGTNGKTTTTY 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE-----LGMS 170 ++ L K A G+ +G P +L + + E + +S Sbjct: 122 LVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + I V T I+ H+ +E A+ + F L +TG + D Sbjct: 182 THATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVINIDD 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + K+ I T KNAD + K S V G Sbjct: 242 PYAEHIIKNTRTEILTYG--INDKNADIRAFDIKVSKTGSRFNVITPLGETVFYLRLPGR 299 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L +G+ +++ +A++ + + Sbjct: 300 YNVYNALAAVGVGISEGLNLNEIREAIAHASVPGRF--------ERIDCGQSFDVIVDYA 351 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + A L EGR I V G G+ L V++ L+ + Sbjct: 352 HTPDALQKALETARGLSEGRIIVVFG----CGDDKDR--RPLMGVVAARMSDIAILTSDN 405 Query: 411 VL---------ALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + S E +GD+V++ K Sbjct: 406 SRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKG 460 >gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 494 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 86/460 (18%), Positives = 155/460 (33%), Gaps = 42/460 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + I +DSR + F +KG DGHDF AV+ GA +V ++ Sbjct: 16 VNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAEREL---- 71 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + +PV V L AL+ L+ A + K +I ITG+ GKT+T M+ L K Sbjct: 72 -DVDVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130 Query: 137 YACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 IG+ IG + D + +S H Sbjct: 131 TGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRVHGC 190 Query: 183 RPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 IAV T + HL ++E A + G + + A Sbjct: 191 DYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFE 250 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + I ++G NAD + ++ + ++ + + +G N+L + Sbjct: 251 KVTAAHISTYGIKNNADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNVYNVLAAV 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +T A+ H GR + Y P S++ ++ Sbjct: 311 ATCIAAGIPFETITAAVEELHGVRGRFELVNQQQEFPVIVD----YAHTPDSLENVLNTC 366 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL-- 414 + EG+ V+G G+ ++ +A++ ++ S A+ Sbjct: 367 RDM---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILR 420 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + + H + F ++ GDVV++ K Sbjct: 421 DMEAGVENEYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460 >gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] Length = 493 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 84/464 (18%), Positives = 157/464 (33%), Gaps = 47/464 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 I P + I +DSR + F IKG DGHD+ AV+ GA +V Sbjct: 18 ELINENPD--ITSIEMDSREVKEGSLFVCIKGYTVDGHDYAEKAVKSGAAAIVAEHP--- 72 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV V AL ++A A + K +I ITG+ GKT+T M+ + Sbjct: 73 -LNITDVPVIIVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQVMRKAE 131 Query: 134 --------KKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFL 178 + P + DVD I E+ L R Sbjct: 132 KKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 IAV T + HL + +EE A + G + + + Sbjct: 192 GCDYD--IAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEAS 249 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + + ++ + AD + + + + ++ + +V +G N+ Sbjct: 250 SYFEKVTAAEVMTYALEQKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNI 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + + +T + A+ +GR + C + Y P S++ Sbjct: 310 LAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVD----YAHTPDSLENV 365 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVL 412 ++ ++ EG+ V+G G+ ++ +A++ Y V+ S Sbjct: 366 LTTCREL---TEGKIFCVIG---CGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPS 419 Query: 413 ALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + H F ++ GD V++ K Sbjct: 420 AILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGKG 463 >gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] Length = 483 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 74/473 (15%), Positives = 153/473 (32%), Gaps = 45/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ I+ + + I DSR++ + F I+G DGH ++ AV G Sbjct: 1 MNLKKILKEIKYELLKGNDDLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+ + D+ V +D L + K +I ITG+ GKTT+ Sbjct: 61 AAAVICSKDIENLTE---CTVIKTEDTRKVLALASANYYDHPSDKLKVIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L + +G+ N++G + + E + Sbjct: 118 TFMMKSILEAQGYKVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V+ A+ T + HL E +AK +F+ L+ Sbjct: 178 VSSHSLYLDRVYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKN-------TLSSV 230 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + S+ K AD + S ++ + ++ + + Sbjct: 231 VNIDDEYGERVYEDSEGKKTSYAIDKVADVKGSNLHMHSRGVEFDITYKNETQHINLNIP 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L + + T + L GR + + G+ ++D ++ Sbjct: 291 GKYNVMNALGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGYEVIVDYAHTP 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L +G+ I+V G G + + + ++ Sbjct: 351 DGLE-----NILKTAREFTKGKLISVFG----CGGDRDNTKRPIMGKIGTELSDKAVITS 401 Query: 409 FH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +K+ + + E DV+VV K Sbjct: 402 DNPRTEDPMSIIKEVVAGVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKG 454 >gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] Length = 483 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 80/473 (16%), Positives = 154/473 (32%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L++++ I + + I DSR + + F I+G DGH + A G Sbjct: 1 MNLNLILKSLEYSIIKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL ++ II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEDLSYYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V A+ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G KN D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL GR + N G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403 Query: 409 FHVL------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L + E + DV+VV K Sbjct: 404 DNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKG 456 >gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium cellulovorans 743B] gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] Length = 481 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 168/473 (35%), Gaps = 46/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L++ + + +NGI DSR + + F I G DGH+F AV G Sbjct: 1 MNLKELIKDLDYEVLNGDIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +++ D+ A + + V + AL K++ + II +TG+ GKTT+ Sbjct: 61 ANVIICEKDITAY---KDVTIIKVKNTRKALAKVSAVYYNNPERRLKIIGVTGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 ML L IG+ N+IG L + + Sbjct: 118 VFMLKAILEKAGFKVGLIGTIANYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + + + T + HL +E ++KA++F + + +N D Sbjct: 178 VSSHSLDLDRVYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLF---TVSKSSIINLD 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + L K+ ++ KNAD + S S E++ G+ + Sbjct: 235 DDYGVALADKTQEK-----LTYAIDKNADLKAENINLTSRGSTFELEYNGEKEIFNINIP 289 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + QN L +G + + + L GR + N GF ++D ++ Sbjct: 290 GKYNIQNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGFEIIVDYAHTP 349 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + +L +GR I+V G G + + + N ++ Sbjct: 350 DS-----LLKILKTAREFTDGRLISVFG----CGGDRDNSKRHIMGGIGSENSDIAIITS 400 Query: 409 FHVLA------LKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +K + + + E + +GD++VV K Sbjct: 401 DNPRSEEPSEIIKQVVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKG 453 >gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Atopobium parvulum DSM 20469] gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Atopobium parvulum DSM 20469] Length = 478 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 119/497 (23%), Positives = 201/497 (40%), Gaps = 50/497 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + ++ A + + IDSR + F A G +G+ ++ Sbjct: 1 MVKL-SVEQIVAATHAQLLHRGTREVAGCAVIDSREVQQGSLFVAFAGEKVNGNSYL--- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------------- 104 + A++ S PV D++L +L + Sbjct: 57 --------LSAAQAGAAVVVASEPV--TDNLLDSLAATGASVLEAADDDCEAFLLALAAA 106 Query: 105 ----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 ++ +TGSVGKTTTKEML + + ++ +A G++NN IG+PLT+ P D Sbjct: 107 WREAHPNWLVVGVTGSVGKTTTKEMLRRGIGATRRVHATAGNHNNLIGLPLTVLSTPEDT 166 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + ELGM+H GEI LT + RP +AVIT + +H+ + IA AKAEI G+ Sbjct: 167 EVLVLELGMNHAGEITRLTSVARPTVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAF 226 Query: 221 ----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEV 274 T+ + + + K + G +++ +K + + Sbjct: 227 GSIEPTLIQASAGDYTKFIADKFARPARVVCKTVGATEDDVMSAQKVILDEKGLPTATIS 286 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 G S V G + ++L+ L V L D+D A +A+ R Sbjct: 287 ASSGWSRTVTLEVPGRVVVDDLLLALEAVETLGLDLDAAAEAIEQMPATRMRLSVLDATC 346 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 +ID+SYNA+P S AA+ VL Q+ EGRRIA++G++ E+G + H + Sbjct: 347 GAK---IIDDSYNASPNSTAAALDVLMQMPA--EGRRIALIGEIGELGPEEKRLHGYVGA 401 Query: 395 VLSLYNISHVWLSGF-HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ N V G + +A + ++ + L GDV++ Sbjct: 402 YIAAKNPDFVAFVGTGAAREMVEAARVMGFSEDKIEQFNDVNEALAVLGPVLKQGDVLLA 461 Query: 450 KSSNSCGFYRLINLLLE 466 K+S S + + E Sbjct: 462 KASRSAQLDIFVKGVTE 478 >gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Verminephrobacter eiseniae EF01-2] gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Verminephrobacter eiseniae EF01-2] Length = 475 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 112/472 (23%), Positives = 184/472 (38%), Gaps = 26/472 (5%) Query: 3 PLWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 + T L I + V + D+R++ + F A++GP +D H F+ Sbjct: 18 AMMTLQQAFALLQPRIPAARLVGAGATPVARVHTDTRTVQAGDLFVALRGPRFDAHAFLA 77 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A + +P V D L AL LA R + +IA+TGS G Sbjct: 78 QAR----AGGAAAALAQGGLADAGLPGIEVPDSLAALALLAAGWRAQFDLPLIAVTGSNG 133 Query: 119 KTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 KTT +M+ A G++NN IG+PLTL R+ + ELGM+H GEI Sbjct: 134 KTTVTQMVAAILRAWQGDAALATQGNFNNAIGLPLTLLRLRARHTVAVVELGMNHPGEIA 193 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + +P +A++ HL + +A +F L G DD + L + Sbjct: 194 ALAGIAQPGVALVNNAQREHLEFMHSVAAVARENGSVFASLPAHGVAVFPADDDYQALWQ 253 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + G AD + + + + H G H N Sbjct: 254 ELAAGRECLRFGAGGAVDGADARWVD-----GAWALTLATPQGPVTTRLHIAGRHNVGNA 308 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L A + + LS F P GR + + +++D+SYNANP S++AA Sbjct: 309 LAAAACALAAGAPLAALAQGLSGFSPVPGRSRSFSIRHAGRQISVVDDSYNANPDSVRAA 368 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 I++L+++ R+ VLGDM E+G + H I ++ Sbjct: 369 IALLAELPA----PRLLVLGDMAEVGAQAAQLHAQAGAQAHAAGIHRLFA---LGAQSAH 421 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 A + +++D L ++ +L DV V+VK S S +++ + Sbjct: 422 AASAFAGAQHFDSIDSLCAAVRQALP--DVGSVLVKGSRSMRMEQVLKEIQA 471 >gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] Length = 493 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 84/464 (18%), Positives = 157/464 (33%), Gaps = 47/464 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 I P + I +DSR + F IKG DGHD+ AV+ GA +V Sbjct: 18 ELINENPD--ITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKAVKSGATAIVAEHP--- 72 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV V AL ++A A + K +I ITG+ GKT+T M+ + Sbjct: 73 -LNITEVPVIIVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQMMRKAE 131 Query: 134 --------KKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFL 178 + P + DVD I E+ L R Sbjct: 132 KKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 IAV T + HL + +EE A + G + + + Sbjct: 192 GCDYD--IAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEAS 249 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + + ++ + AD + + + + ++ + +V +G N+ Sbjct: 250 SYFEKVTAAEVMTYALERKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNI 309 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + + +T + A+ +GR + C + Y P S++ Sbjct: 310 LAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVD----YAHTPDSLENV 365 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVL 412 ++ ++ EG+ V+G G+ ++ +A++ Y V+ S Sbjct: 366 LTTCKEL---TEGKIFCVIG---CGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPS 419 Query: 413 ALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + H F ++ GD V++ K Sbjct: 420 AILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGKG 463 >gi|255536698|ref|YP_003097069.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacteriaceae bacterium 3519-10] gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] Length = 813 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 100/468 (21%), Positives = 185/468 (39%), Gaps = 26/468 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-AP-QEAFFAIKGPHYDGHDFIL 58 MN +T L + IG + V G++ DSR+I +P AF AI G +I Sbjct: 1 MN--YTTLQLSEITGSELIG-DGKLCVTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYIT 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117 A++KG +V+ + + + V+D L + KLA + I ITGS Sbjct: 58 SAIEKGISVVISQHRIESE---TDVTWIIVEDSLKFIQKLAKYHFAQFTLKTTIGITGSN 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKT KE L +L T S+N+ +G+PL+L ++ + GIFE+G+S E+ Sbjct: 115 GKTIVKEWLYQSLFDEFITVKSPKSFNSQLGLPLSLLKVSARDEIGIFEVGISKPSEMER 174 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 L + +P I V+T I PAH SNF E E + + I N D+ L Sbjct: 175 LADIFKPQIGVLTHIGPAHESNF---ENQKQLIEEKIKLFSDSDVILFNGDNLLVHSLIT 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + ++ + S+G + D ++ + + S + + + Sbjct: 232 ERYSSK--KLISYGFETHNDIFIKSSPKEGDLSIVYFGEEFNLPA------QRRDEATLN 283 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L ++++L + + + R +I++ YN + S+K Sbjct: 284 NALCVIAVLKVLGFSTDIIREKINMLKPVEMRLESVKGLRNNLIINDYYNLDLDSLKI-- 341 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 I+ + + + VL D E G+ + + ++ + + HV+L G + + Sbjct: 342 -AFQFINEYNKPAKTLVLTDFVE-GKETTLLYQTVSNLTNQQKFQHVFLIGDEITKYSEL 399 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V L V+ +++++K + ++ + L Sbjct: 400 FE--GDVAVFNNTTQLIESHYLDSVENELILLKGARKFEIEKVKDHLE 445 >gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] Length = 430 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 167/401 (41%), Gaps = 32/401 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L F L A+ G I N ++ DSR++ P F ++G DGH +I A+Q Sbjct: 2 LLGFEALCTAVAGTFICNYSHYAGFNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQ 61 Query: 63 KGAGLVVVNTDMVASIGSLS----------IPVFGVDDVLGALNKLAVAARLRSK-ATII 111 +GA V+ + + + V+ L AL A A R I Sbjct: 62 QGADCVLADAAHLDIQENAQHILVLCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKI 121 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 +TGS GKTTTKE+L + +T G+ N+ G+PL++ + + + GIFELGM+ Sbjct: 122 GVTGSNGKTTTKELLASIFAQKYRTVKNEGNLNSETGLPLSVFTITKEHEVGIFELGMNR 181 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 GEI L +++P+IAVIT I AH+ + IA K IF ++T F+ D + Sbjct: 182 KGEIAELAAVLKPNIAVITNIGTAHIGMLGSKDAIAQEKKHIFSCFDETSVGFVPAQDKY 241 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 E L+ H + + + +++ K + G H Sbjct: 242 AEFLQDVPHGKIV-------------TYSADPDAYTLEGLSGAEIRYKGETIHLPLPGKH 288 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N + + + + + GR + R G T + + YNANP Sbjct: 289 NVHNAFAAIAVAEYCKIPLQSIKAGIEQMQALFGRSQIIR-----GPVTYLLDCYNANPD 343 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 SM A +++ + I G++I VL M E+G S H + Sbjct: 344 SMNAGLALCANIRVS--GKKIYVLASMKELGFESHEAHKAV 382 >gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] Length = 507 Score = 160 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 83/489 (16%), Positives = 154/489 (31%), Gaps = 54/489 (11%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 D+L + G V G++ DSR + P + F AI G DG FI AV + Sbjct: 1 MKLTDVLAGCGAEQTSGGRSAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA VV + S +P F V AL +A R + T++ ITG+ GKTT Sbjct: 61 GAVAVVSEKPV----PSSQVPFFKVSSARKALALIAANFYGRPADQLTLLGITGTNGKTT 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE---L 167 T +L ++ + IG+ PL L R+ ++ E + Sbjct: 117 TSYLLEAMSTAAYASTGVIGTLGYKFAGRTVECANTTPDPLELHRILREMVEAGVETVIM 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + H + A + ++ HL +E+ +K ++F + + Sbjct: 177 EVSSHALAQERVHGLTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAVVN 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + F + + + + ++ + + Sbjct: 237 GDDTYASRIYNEQRGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKL 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G H +N+L+ +GI + + P GR +R G ++ + + Sbjct: 297 LGPHNLENILLAVGIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSGAPAVLVDYAH 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + A + +GR IAV G G L ++ ++ Sbjct: 357 TDDA----LKRSIEAARSLAKGRVIAVFG----CGGDRDKGKRPLMGAVAGEGADLAVVT 408 Query: 408 G-----FHVLAL-----------------KDALPRSIHVHYSE-TMDGLFLFIQSSLVDG 444 + + + S Sbjct: 409 SDNPRTEDPEEIISQVTAGIEKSGLRRISAGKAKSGEKGYLVDADRRAAIEQAISLASAD 468 Query: 445 DVVVV--KS 451 DVV++ K Sbjct: 469 DVVLIAGKG 477 >gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes EGD-e] gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-561] gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e] Length = 491 Score = 160 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + I +FG + ADFQ K S S ++ + + Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P + + + + + V + G+ + +A++ Y + ++ Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 >gi|330721151|gb|EGG99273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-22C6-diaminopimelate--D- alanyl-D-alanine ligase [gamma proteobacterium IMCC2047] Length = 376 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 110/376 (29%), Positives = 163/376 (43%), Gaps = 9/376 (2%) Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V++ AL L R K ++A+TGS GKTT KEM L + T A G++NN + Sbjct: 2 VENCRDALGLLGSINRESFKGPMLAMTGSAGKTTVKEMSAAILGQLGNTLATAGNFNNDL 61 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G PLTL R+ + + + ELG S +GEI + LV+P +A+IT A AH+ F + + Sbjct: 62 GAPLTLLRLAKEHQYAVLELGASSIGEIAYTAGLVKPDVAIITNAAEAHIEGFGCLNNVV 121 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AK EI + L +G +N DD KA++ S F Q + Sbjct: 122 QAKGEILDALPPSGVAVINGDDLNAYKWKARAGDRRQLVFSLNENSGADFFARSYELQAN 181 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 E+ +++V + +G H N L S L A + L P GR Sbjct: 182 GGFAFELVSPEGAIKVTLNHLGKHNIANALAAAAATSELGATLLQIKTGLEAVGPVAGRL 241 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + +ID+SYNANP S++AAI VL G +I VLGDM E+G+ + Sbjct: 242 TGITLSSG---ARIIDDSYNANPESLRAAIDVL----SQCPGHKILVLGDMAELGDTALH 294 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + A I ++ G H E D L +++ + V Sbjct: 295 DHQEAARYARNQGIDNLMTVGSLSAHAAREF--GPQGHAFENHDSLIETLRNRINGHTTV 352 Query: 448 VVKSSNSCGFYRLINL 463 +VK S S R++ Sbjct: 353 LVKGSRSAHMERIVQA 368 >gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] Length = 488 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 82/477 (17%), Positives = 156/477 (32%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L ++ S+ ++ I DSR + + F AIKG DGH++I A+++ Sbjct: 1 MANLKDILYKVKLISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V + S + D+ AL +A K +IA+TG+ GKTT Sbjct: 61 GAVAIVCED--IPSDIHPQVTYVQTDNSAKALGVMAANYFGHPSEKLKLIAVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167 T +L ++ I + N I +L + VD I + Sbjct: 119 TVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMVDSGCNIVFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + ++ AV T I+ HL + AK ++F+ L +N Sbjct: 179 EASSHAIEQERMAGLKLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDDLPSDAFALVNV 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ A Y++ A ++ + + + + + + Sbjct: 239 DDKRGMVMLQNCKASK----YTYSLKMMAIYKAKVLSNSIQGLELNIDQKDVWFRQI--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 N L + + + + L E + R+ N T + + Y Sbjct: 292 ----GYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFEQVPNNAGITAVVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + + E V G + L ++ V L+ Sbjct: 347 HTPDALENVLQTIDNFRTGNEQVLTVV-----GCGGNRDTTKRPLMAEIACRFSDRVILT 401 Query: 408 G-----FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + V S GD+++V K Sbjct: 402 SDNPRFEEPEAIIADMQKGVPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKG 458 >gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 10403S] Length = 491 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + I +FG + ADFQ K S S ++ + + Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P + + + + + V + G+ + +A++ Y + ++ Sbjct: 352 AHTPDGLLNVLETIDEFAKKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 >gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes Finland 1988] gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165] gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes J0161] gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900] gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165] gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900] gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] Length = 491 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + I +FG + ADFQ K S S ++ + + Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P + + + + + V + G+ + +A++ Y + ++ Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 >gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] Length = 483 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 80/473 (16%), Positives = 153/473 (32%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L++++ I + + I DSR + + F I+G DGH + A G Sbjct: 1 MNLNLILKSLEYSFIKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL ++ II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V A+ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G KN D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL GR + N G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403 Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L E + DV+VV K Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456 >gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 483 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 85/477 (17%), Positives = 171/477 (35%), Gaps = 54/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ + I P + G+ DSR + F AIKG DG ++ A++ G Sbjct: 1 MKLIDILKGVNCE-IKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +VV+ ++ G + V+D A+ K+A K T+I +TG+ GKT+ Sbjct: 60 AIAIVVDREIKEYPG---VTTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ML L +G+ N IG L + V + + E Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKGVKYVVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + IAV T ++ HL +EE A K+++F+ ++ I ++ Sbjct: 177 V--SSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVINID 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A + + + +VQ++ K E+ Sbjct: 235 ------DKYSSMMIESSKARVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ ID ++ Sbjct: 289 IPGLFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I + G G L ++ L Sbjct: 346 TPDG-----IQNMMEALKEYKAGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + E + + DV+++ K Sbjct: 397 TSDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKG 453 >gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum F str. 230613] Length = 483 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 80/473 (16%), Positives = 152/473 (32%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L+++ I + + I DSR + + F I+G DGH + A G Sbjct: 1 MNLNLILKSLGYSFIKEY-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL ++ II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V A+ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G KN D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL GR + N G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403 Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L E + DV+VV K Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456 >gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] Length = 478 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 79/507 (15%), Positives = 157/507 (30%), Gaps = 73/507 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L I + ++ DSR I F AI G +DGH FI A+ G Sbjct: 1 MNLTDILDKINYIDYTKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFIDKAIANG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A +VV D+ I V D AL +++ K +I +TG+ GKTTT Sbjct: 61 ANTIVVTEDVTEID---DINYIKVKDSRVALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLARMP-----------VDVDFGIFE 166 M++ L + IG+ P T + +D + E Sbjct: 118 ASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVE 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S G + +AV ++ H+ +E AK +FE Sbjct: 178 C--SSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN--------AK 227 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + Y+F +DF+ + + + + K+++ V + Sbjct: 228 KKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELIDGK----MHFEIKNVKFVLN 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 N + + V++L ++ K+L F E R + + + + Sbjct: 284 RFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVKNEMGINIVIDFAHT- 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + +R + M G+ + ++ ++ + N+ V Sbjct: 343 ---------PKAFENIYKSVPNDKRKIAVYGMS--GDRTSEIRHEVGKISAENNVFSVVT 391 Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS-NS 454 + + + + + +GD V++ K N Sbjct: 392 TDDPKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENF 451 Query: 455 CGF--------------YRLINLLLEE 467 +++ L + Sbjct: 452 IKLKGNEKTPYSEKETVNEVLDELKNK 478 >gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] Length = 496 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 78/478 (16%), Positives = 142/478 (29%), Gaps = 47/478 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++ + + + ++ DSR++ F A+ G DGH+++ A++ GA Sbjct: 6 LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAV 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+V+ + S + V V+D A+ +I +TG+ GKTTT Sbjct: 66 AVLVSKPVDV---SGDVCVITVEDTRAAMMVCVPYFFDYPANSMRMIGVTGTNGKTTTSH 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDV-------DFGIFE------LGMS 170 M+ L + IG+ + IG + DV + E + +S Sbjct: 123 MIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVS 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228 V AV T + HL E A K Sbjct: 183 SHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAV 242 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + I ++ + + S V G V + Sbjct: 243 INIDDAYGHRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTT 302 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +G + ++ KAL F GR + + + Sbjct: 303 GLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDG 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++L E R I V G G + + ++ V+++ Sbjct: 363 -------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVYVTS 411 Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L H + GD+V++ K Sbjct: 412 DNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKG 469 >gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265] Length = 440 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 89/467 (19%), Positives = 165/467 (35%), Gaps = 39/467 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + + G +G + ++ S P F A+ G G F A+Q GA Sbjct: 3 ASQLAKIVNGQLVGD--DFEFDHVAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQNGAS 60 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + + AS V D A+ KL I+ + G+ GKTT KE+ Sbjct: 61 GLLTDVEPEASN------YVLVTDAFEAVKKLGETLVRSYSGKIVVVLGASGKTTLKELA 114 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + + L R + + I E G+ + + P+ Sbjct: 115 RSLAPVRVWSSYGNRNTIISLVTDLFNERESALNAPYWILEFGIHDKKDADDFLQVFNPY 174 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T++ HL ++ ++ K + + +L Sbjct: 175 AALFTSLGAEHLEFLENVDVAVRTNLKVGMAATKRFALVSDEYSVEDAIL---------- 224 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 FG + + + C + ++ G+ +VV G AQ++ Sbjct: 225 ----FGSPQTSAWFDISSFTCDGCTLGKLMCHGEEKDVVLPFWGKRSAQSVAGAAAFWVS 280 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D L + + G + ++YNANP SMK + V+S++ Sbjct: 281 EGFGLDE----LPWENLDTINIWGRQQLTRWGDLLIFFDAYNANPESMKEFLEVVSEVPY 336 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421 +G V+GDM E+GE S +H LA L I ++ L G V L + + Sbjct: 337 GKKG---LVIGDMLELGEYSHYWHRKLAHWLKKSGIQYLILVGNEVKYTLRELEKVDGHA 393 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVV--VKSSNSCGFYRLINLLLE 466 ++V + ++ F ++ D+ + +K S +LI + E Sbjct: 394 MYVEWYRDVETARSFF---MIPEDIELLGLKGSRRIALEKLIQEVSE 437 >gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] Length = 483 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 87/477 (18%), Positives = 171/477 (35%), Gaps = 54/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ + I P + G+ DSR + F AIKG DG ++ A++ G Sbjct: 1 MKLIDILKGVNCE-IKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VVV+ ++ G I V+D A+ K+A K T+I +TG+ GKT+ Sbjct: 60 AIAVVVDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ML L +G+ N IG L + V + + E Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + IAV T ++ HL +EE A K+++F+ ++ I ++ Sbjct: 177 V--SSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVINID 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A + + + +VQ++ K E+ Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLK 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ ID ++ Sbjct: 289 IPGLFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I + G G L ++ L Sbjct: 346 TPDG-----IQNMMEALKEYKAGRKILLFGA----GGDRDRIKRPLMGEIAGKYADFCIL 396 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + E + + DV+++ K Sbjct: 397 TSDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKG 453 >gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 476 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 118/477 (24%), Positives = 190/477 (39%), Gaps = 29/477 (6%) Query: 4 LWTFHDLLQAIQGHS-----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 ++T D++ Q + DSR + F AI G DGH FI Sbjct: 1 MFTLQDVIAGSQELLSMHGSLADPGHLLFQCAQHDSRQYERDDLFVAITGARVDGHRFIP 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117 + G + T ++ V DV+ AL A R T+ I ITGS Sbjct: 61 AIARAGGAGALCTT--LSEDVPAGFLQLVVPDVVKALQATARVRVQRQPETLKIGITGSS 118 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKE + L + T SYNN +G PLTL R+ + + + E+G +GE+R Sbjct: 119 GKTTTKEAIAAVLGRVAPTLKTYASYNNELGYPLTLLRLEAEHRYAVLEMGAEWVGELRG 178 Query: 178 LT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L + P +VITT+ AHL +F + +A AK+E+ + L G FLNYDD +K Sbjct: 179 LCETIACPDWSVITTVGAAHLKHFGSLANVAIAKSELVQVLSPEGIAFLNYDDPVVRAMK 238 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K+ A I G + A + S + + G A Sbjct: 239 EKTRARVIYYGQGDGAAVRALHVEERGLLGSRFTLRIEDEDVPVQLRLPGTHGITTALAA 298 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 +I + +++ALS + TLID++YNA S+ A Sbjct: 299 AAVGSAANIPLESIRESLEALSPVQG----RGVVKGGAGPNGSTLIDDTYNAIRHSIIAM 354 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412 + + +G+R VLG++ E GE ++ H+ L+ + ++ + G + Sbjct: 355 AQAMQATTIAPQGKRWVVLGELFEQGEHTRDEHLASGLGLA-GKVDYLVVLGDNARYYME 413 Query: 413 -ALKDALPRSIHVHYSET----------MDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 AL+ +PR H+S + ++ + D++++K S Sbjct: 414 GALQAGMPRKAIYHFSVDTTKSTDVEEGKRAIASLLKEKVTPDDLLLIKGSRQMRME 470 >gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-003] Length = 491 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + I +FG + ADFQ K S S ++ + + Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P + + + + + V + G+ + +A++ Y + ++ Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 >gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74] gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74] Length = 835 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 102/450 (22%), Positives = 167/450 (37%), Gaps = 23/450 (5%) Query: 32 IDSRSIA---PQEA-----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--- 80 DSR + FFAI G H+DGH FI +KG V+ + Sbjct: 15 TDSRQVTGHAADSLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREEL 74 Query: 81 ---LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 VD L L LA R + + +I ITGS GKT KE L L+ Sbjct: 75 ATYADAQFTKVDSSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLADEYVIA 134 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 SYN+ +GVPL++ ++ IFE G+S E++ L ++RP I + T I AH Sbjct: 135 RSPKSYNSQLGVPLSVHQLNESHTMAIFEAGISQTQEMQALEAIIRPTIGIFTNIGTAHD 194 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 F ++ + K +F D L K+ ++ I + A Sbjct: 195 QGFRTRKQKVAEKLRLFIHAGTLIYCTDYADIDEEVNLLLKAVNPDMRFITWSLTGQKAT 254 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 +Q + Q + + G + +N++ L + L +++ Sbjct: 255 YQ---GRIAGNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCLVTMLSLRTWSAAELQSR 311 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 R LID+SYN + ++ A+ L+Q RRI +L D Sbjct: 312 LNRLRP--VSMRLEQKEGINNCELIDDSYNNDMVGLQLALRFLNQ--QGTRSRRIVILSD 367 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437 + + G+ F+ + ++ + G V K ++ T + L F Sbjct: 368 VLQTGQPEAEFYEQVGNLMRANEVGQFIGIGPVVSRNKLFFADGSQF-FATTEEFLAQFS 426 Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 S L V+VK + F R+++ L + Sbjct: 427 FSELR-DSTVLVKGARPFSFERIVHRLERK 455 >gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter sp. X514] gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X514] gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 483 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 84/477 (17%), Positives = 172/477 (36%), Gaps = 54/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ ++ I P ++G+ DSR + F AIKG DG ++ A++ G Sbjct: 1 MKLIDILKGVKCE-IKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + ++ G I V+D + K+A K T+I +TG+ GKT+ Sbjct: 60 AVAVVADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ML L +G+ N IG L + V + + E Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S IA+ T ++ HL +EE A K+++F+ ++ I ++ Sbjct: 177 V--SSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVINID 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A + + + +VQ++ K E+ Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ ID ++ Sbjct: 289 IPGLFNVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I + G G L ++ L Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + + E + ++ DV+++ K Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKG 453 >gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] Length = 1110 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 119/413 (28%), Positives = 196/413 (47%), Gaps = 8/413 (1%) Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +KG LV+ + G V + AL KLA+A R + +I +TGS Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQ----YLEVRNTFTALIKLALARRAAFRGRVIGVTGS 426 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 VGKTT M+T L + Y I ++N+ GVP ++A +P + + E+GM I Sbjct: 427 VGKTTVCSMVTSLLGVHGEVYKNIANFNHQPGVPKSIANIPRTARYAVIEMGMGAKRTIL 486 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 LVRPH AV+T I H+ + + + K EI G+E GT+ LN D ++F L Sbjct: 487 PKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWGVESGGTVVLNRDSAYFATLH 546 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + I +FG+ AD + QS ++V++ ++ + G HMA N Sbjct: 547 GLALQRSDINILTFGQHPQADICAEEIVLEPVQSVIQVRVFQQTFKYTLSLPGMHMALNS 606 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNANPASMKA 355 L+ + ++ D+ T++ + R ++ R G I D+S+NANPAS+++ Sbjct: 607 LIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGARIQILDDSFNANPASIRS 666 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + +L + P EGRRI VL DM EMG + +H LA+ ++ I G + AL Sbjct: 667 NLHLLELMRPESEGRRILVLSDMGEMGSEALHYHTALAQDINDSQIDIFLSIGDYCHALD 726 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + I + +++ L F+Q + GD+V K S +++ L++ F Sbjct: 727 QLIENRITHKHFNSVEALETFLQEVVRSGDIVSFKGSAREA--TIVD-LVKRF 776 >gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila felis Fe/C-56] gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila felis Fe/C-56] Length = 448 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 17/437 (3%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++G++IDSR + P + FFA+ G DGH F+ A Q GA VV+ D L + Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQAAQAGAVAAVVSKDYCGDSFGLDL-- 82 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V D AL + + TI+ ITGS+GKTTTK LSS+ + YA SYN+ Sbjct: 83 VVVQDTTEALKEAGENQGHLFQGTIVGITGSIGKTTTKTFAKTFLSSVYRVYASPKSYNS 142 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + VPL+L D DF I E+G+S G +R L +V P I+VIT IA H NF + Sbjct: 143 QLTVPLSLLMADGDEDFIILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINF-PDQG 201 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + E L+ + L D ++ +S + + + ++ + ++ Sbjct: 202 VRGIAEEKSHILQTSRIQLLPKDSPWYSHFIKQSPSSEKFSFAFYNETADFYYK------ 255 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++ + + ++ N+L++ + +L VD I + S Sbjct: 256 AIQKDSVIISTPEGDVDFAVSFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLPPM 315 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + Q +I+++YNA P +M AA+ + +P G+ I +LG M E+G S Sbjct: 316 RFELSMRNGIQ----VINDAYNACPEAMIAALDAI--PNPSEGGKVILILGHMAELGNYS 369 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444 + H +A L + ++ G L+ + L S V + + + ++S + G Sbjct: 370 EEGHAIVANKA-LSKANIIFFIGEKWLSSQHLLKSSSCEVSFYPSAQSVEEILKSVVQQG 428 Query: 445 DVVVVKSSNSCGFYRLI 461 D+V++K S + L+ Sbjct: 429 DIVLLKGSRALALESLL 445 >gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Verrucomicrobium spinosum DSM 4136] Length = 507 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 94/472 (19%), Positives = 161/472 (34%), Gaps = 41/472 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL++ + I V G++ DSR + P FFA++G DGHDFI A+ +GA Sbjct: 4 LRDLIEGLDKPVISGGLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V T A S+ V + AL ++A A + + +TG+ GKTTT Sbjct: 64 AIVAET---APPEDCSVTWLHVKNARVALAEMAAAYKGHPARSMAVGGVTGTNGKTTTAF 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFELGMS 170 +L L+ + +G+ +G P T D + +S Sbjct: 121 LLHHLLNHAHRRCGLLGTVVYDVGGDLKPATHTTPESLELQGLLSEMRDRGCVAVAMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + TH V AV T ++ HL +EE AK+++F + + L + Sbjct: 181 SHAIDQHRTHGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVD 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + ++G AD++ + + E++ +G+S+ V IG Sbjct: 241 DIWGRRLVDAHKEHPGLVTYGLGVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQIGQ 300 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L L + ++ +KA R + Y P Sbjct: 301 FNVYNSLAALAAAHGMGCNLRDTVKA---MQSSPQIPGRMERVTPDNHSFHVFVDYAHTP 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + A+S + P I V G G L + L+ + Sbjct: 358 DGLVNALSTARALRPER---IITVFG----CGGDRDRLKRPLMARAVEEHSDISILTSDN 410 Query: 411 ---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + RS H + +GD+VV+ K Sbjct: 411 PRTEDPQAIMDDARKGFTRSAHALIA-DRKEAIHTAIKGAREGDIVVIAGKG 461 >gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132] gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132] Length = 802 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 96/446 (21%), Positives = 167/446 (37%), Gaps = 34/446 (7%) Query: 32 IDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIP 84 DSR ++ + FFAIKG +DGH FI KG VV + + + Sbjct: 15 TDSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVK 74 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VD + L ++A R + +I ITGS GKT KE L L SYN Sbjct: 75 ALLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDKDFDIVKSPRSYN 134 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGV L++ M GIFE G+S GE++ L +++P I V T I +H F Sbjct: 135 SQIGVALSVWEMSSRYQLGIFEAGISLPGEMKALQKIIQPTIGVFTNIGSSHSEGFESDR 194 Query: 205 EIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262 + K ++F E + ++ L ++ L I + Sbjct: 195 QKIREKLQLFVKSETLIYCRDYSEIEEEVNAFLLEQNPNLKIVSW--------------- 239 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 K E + K + I +N++ + + D D + Sbjct: 240 SKADVEVKDGKAYFLWKGEKYELPFIDAASVENLVHCILAALSVKEDWD-----VRRLRF 294 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 R + +ID++YN + +K A+ +SQ H ++ +L DM + G Sbjct: 295 LNPVEMRLELKEGREDNYIIDDTYNNDLGGLKMALQFMSQ--AHTLRGKVLILSDMFQTG 352 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSL 441 +S + ++++ ++ G H L + Y + L + Sbjct: 353 LEGESLSRVMQDLIAPQGLNTFIGVGEHWKKYPIHLS-GVETQYYDDTKALLTSGALERI 411 Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467 +++VK + F +++ L++ Sbjct: 412 KS-SLILVKGARIFAFEKIVEKLIKR 436 >gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 483 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 84/477 (17%), Positives = 172/477 (36%), Gaps = 54/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ ++ I P ++G+ DSR + F AIKG DG ++ A++ G Sbjct: 1 MKLIDILKGVKCE-IKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + ++ G I V+D + K+A K T+I +TG+ GKT+ Sbjct: 60 AVAVVADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ML L +G+ N IG L + V + + E Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S IA+ T ++ HL +EE A K+++F+ ++ I ++ Sbjct: 177 V--SSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVINID 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A + + + +VQ++ K E+ Sbjct: 235 ------DKYSSMMIESSKAKVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ ID ++ Sbjct: 289 IPGLFNVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I + G G L ++ L Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + + E + ++ DV+++ K Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKG 453 >gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] Length = 483 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 80/473 (16%), Positives = 153/473 (32%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L++++ I + + I DSR + + F I+G DGH + A G Sbjct: 1 MNLNLILKSLEYSFIKEN-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL ++ II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V A+ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G KN D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL GR + N G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403 Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L E + DV+VV K Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456 >gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium etli GR56] Length = 247 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 140/248 (56%), Positives = 180/248 (72%), Gaps = 1/248 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSI+ EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTDDMIAAMAGRPFGTLPEG-ITGISIDSRSISSGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL KL +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGKLGLASRERSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQVLSPSGKVHASVASFNNHWGVPLTLARMPGDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIY 248 +LGI+ I+ Sbjct: 240 SLGIEHIH 247 >gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] Length = 486 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 151/475 (31%), Gaps = 45/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L+ I+ S+ V + DSR + F IKG DGH +I A +KG Sbjct: 1 MKLNHILEGIEVLSVVGNEDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + ++ D+ V+D + K+A K +I +TG+ GKT+ Sbjct: 61 ARVFLIQDDVDFKE---DCTYVKVEDTRKTMAKVAANFCEHPADKFDVIGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VP-----------LTLARMPVDVDFGIFELG 168 + L + K IG+ G VP + + VD + Sbjct: 118 TTFINEILRNCNKKVGLIGTIKIFDGDNEVPSNSTTPESVDLQKIFKRMVDNGCDCCAME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S I + T + P HL +E AK ++F KT + Sbjct: 178 VSSHSLELSRVDDTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFH---KTTQANIINV 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ Y++G +ADF + K + + + ++ Sbjct: 235 DDEGGRKIYEAIKGLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTPNHTEDIFIPVP 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + +L D + + +L GR + + +A Sbjct: 295 GKFTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAGRFETVPNDKGISVIVDYAHTPDA 354 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL+ EG IAV G G S L + ++ Sbjct: 355 -------LENVLNTAREFVEGDLIAVFG----CGGDRDSEKRPLMGGIGQRLSDRCIITN 403 Query: 409 FHVL------ALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L + + S GDV+++ K Sbjct: 404 DNPRTEDPELIIKDILAGLDESNENYKVVMDRKEAIKEAIESAKKGDVILIAGKG 458 >gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 491 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A+AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG + ADF+ + S S +++ + + Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKANNIRITSHGSTFDLRTPIGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 >gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] Length = 481 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 165/469 (35%), Gaps = 45/469 (9%) Query: 8 HDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL + + + G+ DSR I + F A++G DGH +I A++ GA Sbjct: 2 EELLLGLDYEILQKGKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGAK 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 V+V+ + + V D+ L K+A + K II ITG+ GKTT+ Sbjct: 62 GVLVSKKVEPEFP---VEYILVKDLRKNLGKIASNFYGYPQKKLKIIGITGTNGKTTSTY 118 Query: 125 MLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHL 172 +L L K Y + + + + +S Sbjct: 119 LLESILGKEKVARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKKAVEKGLEYLVMEVSSH 178 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 ++ +A T + HL ++ AK ++F L+ + +N DD + Sbjct: 179 ALSLGRVDMLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFTMLKDSKKSSINIDDIYG 238 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + L + YS+ +K+AD + S+ ++ + L G+ E +G + Sbjct: 239 DRLYKEFGG------YSYSLTKSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLAILGRYN 292 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L +GI L + ++ L GR + C + + Sbjct: 293 LYNVLGVIGIALQLGIGKNIILEKLKDIKGAPGRFELVNCGQDYIVVVDYAHT------- 345 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 A ++L I+ +GR I V G G + + ++ L+ + Sbjct: 346 GDALENILKSINELKKGRVITVFG----CGGDRDATKRPIMGEIAQRLSDIAILTSDNPR 401 Query: 413 -----ALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++ + E + + D++++ K Sbjct: 402 TENPHLIIEDVKKGMNGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKG 450 >gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes Clip81459] gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-064] gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 1816] Length = 491 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A+AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG + ADF+ + S S +++ + + Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 >gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Chlorobium tepidum TLS] gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium tepidum TLS] Length = 508 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 101/478 (21%), Positives = 168/478 (35%), Gaps = 43/478 (8%) Query: 7 FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 DL+ A+ G + + G++ DSR++ P F A++G DGH FI A++ Sbjct: 13 LDDLVAALGALAERRGGDGARAVITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEA 72 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTT 121 GA V + + S S+ V D AL +L+ A K +I +TG+ GKTT Sbjct: 73 GAVAVACEE--LPAAYSDSVTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTT 130 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167 T ++T L++ IG+ IG L R VD + Sbjct: 131 TARLVTSMLNASGVAAGYIGTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVM 190 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + H + AV T + P HL +EE A AK +F+ L G +N Sbjct: 191 EVSSHSLVLDRVHGLFFRAAVFTNLTPEHLDFHETMEEYAEAKRLLFDQLNAEGFAVINA 250 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEV 283 DD E + A+ + + + D R + E S +V G+SM + Sbjct: 251 DDPRAEFMAARLAPERVFCCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAM 310 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + NML + AL + R ++ Sbjct: 311 QVPLPGAYNVMNMLEAFTVG---VGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAV 367 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P +++ A+ L ++P V G G + ++ + + Sbjct: 368 VDYAHTPDALQKALEALRAVTPADAK-LAVVFG---CGGNRDRQKRPEMGRIAAELA-DR 422 Query: 404 VWLS-----GFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + A+ D + + L GD+++V K Sbjct: 423 VILTSDNPRDENPEAILDEVEAGMAGRVHLRIADRAEAIRRAVEQLGAGDILLVAGKG 480 >gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria monocytogenes L99] Length = 491 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 165/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL ++E A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + +FG + ADF+ + S S ++ V Sbjct: 236 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFTVKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AI L +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y+ + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYSSNPIFT 405 Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 >gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] Length = 486 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 148/476 (31%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ I + + + DSR + F AI G +GH++I A + G Sbjct: 1 MNLKTLLKNISIKASLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + + + V + AL +A K T++ +TG+ GKTT Sbjct: 61 ATAIVCEQ--LPQLLFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FELG 168 +L + + + + V+ G+ + Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + T ++ + T + HL K F+ L T +N D Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ +D++ + + + + +++ Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTYSDYKAYIIESRFDGLLLRINQHEVWTKLI---- 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L ++L D A+ +S P GR + Y Sbjct: 291 GEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQYAVSVTGVITIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + ++ I H E V G + ++ +V L+ Sbjct: 347 TPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILTS 401 Query: 409 FHVLA-----LKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + + + GD++++ K Sbjct: 402 DNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKG 457 >gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] Length = 483 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 157/475 (33%), Gaps = 48/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL+ + + + +N I DSR I+ + F AI+G DGH FI A+ +G Sbjct: 1 MKVNELLKGLNYEILNGTLELDINAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V + ++ I V + AL +A +I ITG+ GKTT+ Sbjct: 61 AKVIVCSKEVE---IHEEITYIKVQNTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L + IG+ +N IG + ++++ + E Sbjct: 118 TYMIKSILELAGHSTGLIGTISNFIGNEKIKSERTTPESLELHEMFKKMKDKNIEYCVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + + T + HL E AK +F+ + + + Sbjct: 178 V--SSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNSIINIDD 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + ++ K AD + + + + + + + Sbjct: 236 TYGERV-----LNDVPDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKSEETHINLS 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L + G ++ K L GR + + GF +ID ++ Sbjct: 291 IPGIYNVYNALCSAGACLSEGISMEDVKKGLESVV-VPGRCENATKEYDLGFDVIIDYAH 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +GR I+V G G + + + Sbjct: 350 TPDGLE-----NILETARDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSDMSDIAIV 400 Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +KD + + + E GDV+VV K Sbjct: 401 TSDNPRTEEPSEIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKKGDVIVVAGKG 455 >gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] Length = 533 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 152/480 (31%), Gaps = 46/480 (9%) Query: 2 NPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 PL DL+Q ++ V + DSR + P FFAI G DG+ +I A Sbjct: 36 TPLNPNVGDLIQGLELRLRKGKLDREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEA 95 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 V +GA ++ D+ + I V+DV AL +A R + +TG+ G Sbjct: 96 VDRGAVAIITEQDLGSHFP---IDYIQVEDVRMALAVVAREFYGRPDERLGLTGVTGTNG 152 Query: 119 KTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL-------------ARMPVDVDFG 163 KTT ++ + I +P Sbjct: 153 KTTVSMLVQHLIGGDDKVGLIGTIRYDIGPRTLPSFRTTPESVDVYALLSQMEDGGCKDA 212 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ S G + + + +AV + H+ +E AK +F G Sbjct: 213 VMEV--SSHGVDQKRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVPH 270 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + + G +FG+ +A + K + ++ + E+ G V Sbjct: 271 SAVVNMDCAYGRRLLTELPGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQATV 330 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 V +G + N+L L +++ +K + F GR + Sbjct: 331 VSPLLGRYNVSNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELIHEKQPYNVLVDYA 390 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A + + G+ I V G G L +L + Sbjct: 391 HTDDA-------LKNATGMLREITPGKLIVVFG----CGGDRDRSKRSLMLKATLEHADQ 439 Query: 404 VWLSGFHVLA-----LKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + + V + E + GD V++ K Sbjct: 440 IFATSDNPRSESVEQIFEDMRLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKG 499 >gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] Length = 491 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL ++E A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + +FG + ADF+ + S S ++ V Sbjct: 236 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFTVKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AI L +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYASNPIFT 405 Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 >gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria monocytogenes str. Scott A] Length = 494 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 4 MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 64 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A+AK+ G + Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG + ADF+ + S S +++ + + Sbjct: 239 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + + Sbjct: 299 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 358 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 359 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 408 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 409 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 463 >gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 500 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 84/483 (17%), Positives = 160/483 (33%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L ++ + G+ +DSR I F + G DG H F+ AV Sbjct: 10 LKELADSLLIKDTIGNMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIQIPKIIVKDARYAMAIIASHFYGYPSNKIKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L L+ +G+ +G + D+ Sbjct: 123 TTTSYLLEKILTDHGFQTGLMGNNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + AV T + HL EE K G + + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--TAVFTNLTQDHLDYHGTFEEYKQVKGLLFSRLGNDFST 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 T + + + + ++G AD Q + + V Sbjct: 241 TDKKIAILNADDPSVEYFKKVTSAEVITYGIHNGADVQAKNITLSPKGIQFLVSTFNGEK 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E+ + +G N L + + + + +LS EGR + + Sbjct: 301 EINLNLVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVD 360 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKIITVFG----CGGDRDTKKRSIMGEIAGSYS 409 Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ L ++ +++Y E + + D+V++ Sbjct: 410 DFVYITSDNPRSEDPQAIMKDIEKGLSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] Length = 550 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 124/255 (48%), Gaps = 7/255 (2%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 NP+W+ +L A G G + +S DSR+I + F A++G +DGH F+ V Sbjct: 31 NPVWSLDQVLLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVV 90 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120 +KGA +V+ + + + V D L AL LA R++ K ++AITGS GKT Sbjct: 91 RKGAAGLVLESPPEEPLPVPVVLV---ADTLQALGDLAHYRRMQMKGLKVLAITGSSGKT 147 Query: 121 TTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM + + G+ NN IG+PL+L + + + E+GM+ GEI Sbjct: 148 TVKEMTAAIMEQGRGRQRVLKTRGNLNNLIGLPLSLLAVDAHHQYAVLEMGMNRFGEIAR 207 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + + +P IA IT + AHL+ + + +A AK E+F G+ T+ +N DD L Sbjct: 208 MAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNRDDPRVWRLAG 267 Query: 238 KSHALGIKTIYSFGK 252 K I G Sbjct: 268 KLPQRRITFGRKPGT 282 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 11/132 (8%) Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID+SYNANP+SM AA+ + + + + +A+LGDM E+G + H + E ++ Sbjct: 414 IDDSYNANPSSMLAALETVHNLRRNRK--VVAILGDMLELGSHGPAAHRFIGEQVARLGF 471 Query: 402 SHVWLSGFHVLALKDALPR----SIHVHYSETMDG-----LFLFIQSSLVDGDVVVVKSS 452 ++ G A R + V L + L + D+V++K+S Sbjct: 472 DYLLTVGEFAGETARAARRAGMDAGQVRACLDKKEVGAWLLEATAKGRLKNDDLVLLKAS 531 Query: 453 NSCGFYRLINLL 464 +I L Sbjct: 532 RGMQMETIIEAL 543 >gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum H04402 065] Length = 483 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 78/473 (16%), Positives = 153/473 (32%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L++++ + + + I DSR + + F I+G DGH + A G Sbjct: 1 MNLNLILKSLEYSFMKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL ++ II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V ++ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G KN D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKITYGLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL GR + N G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403 Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L E + DV+VV K Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456 >gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Deinococcus deserti VCD115] gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Deinococcus deserti VCD115] Length = 433 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 170/457 (37%), Gaps = 56/457 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 ++ DSR +P AF A+ G G+ F+ A+ GA V+ + D+ +L Sbjct: 16 PEARPARRLTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDVP---RAL 72 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +P + AL A R R+ ++ ITGS GKTT K AL + Sbjct: 73 RVPSQEESNARDALFAWARQERARNSL-VVGITGSAGKTTAKSYAAAALEAHYM-----P 126 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 YN + L + E+G+ +GE+ L LVRP + V+T+I PAHL Sbjct: 127 VYNTMPAIACFLIEYGASDRPLVVEMGIDRIGEMAELVDLVRPDVGVVTSIGPAHLEQLG 186 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 IE IA +L+ + +G + + ++ + Sbjct: 187 SIEGIAR---------------------EKGVILQGRRALVGAQAAPYYSQNPGVESYGF 225 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + Q A + +L ++A + Sbjct: 226 GNVTHAGQDLQVTPEGAGFSYGGVDVALPLAAPVQAEAAVLGMVLAQQAGIPLEAAASRL 285 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 + R ++ G +T+ID++YNA+P +++AA+ L + GRRI+VLG M E+ Sbjct: 286 A-QVSLPGGRYRVHPGRYTVIDDAYNASPLAVQAALDALGALP----GRRISVLGRMLEL 340 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 G + H + + G L D T+ L + + + Sbjct: 341 GPTERELHAQVGSYARER-ADLTYGVGPFAAELGD--------RAFATVPELLGALTAEV 391 Query: 442 VDGDVVVVKSSNSC------------GFYRLINLLLE 466 DGDVV++K+S G ++N LL+ Sbjct: 392 RDGDVVLIKASRGISWTPEQRAQEGVGLDVVVNALLQ 428 >gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera radiovictrix DSM 17093] gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera radiovictrix DSM 17093] Length = 459 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 98/442 (22%), Positives = 160/442 (36%), Gaps = 26/442 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ S + P +AFFA+ G G + A+Q GA +V + Sbjct: 27 RGVAFHSARVRPGDAFFALPGASSHGLRYADAALQAGAAFIVSDRPHPRG--------LT 78 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V D L +L AR + +I +TGS GKT+T+ +L AL + Sbjct: 79 VPDPARLLLQLGRVARAALQGPVIGVTGSAGKTSTRALLAAALGAHATRGNFNTPLALAQ 138 Query: 148 GVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 + D + ELG+ H GE+ L L RP + V+T IAPAHL +E + Sbjct: 139 TLVEAWLEDRTGAHDRLVLELGIDHTGEMDELVELTRPTLGVVTLIAPAHLDGLGSVEGV 198 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 A K ++ G+ + L A + +G + K+ Sbjct: 199 AREKFKLLTGVRHAWVSAQ-----AYPFLTPAQRAALQGRLTVYGLDGRETPTGGEAKRV 253 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + + + L +++ A + Sbjct: 254 TGHFASAAGGGALHALGLRVPLALPSPALAENALCALAVAAHLGVDPAAAAARLQGAVLE 313 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 R + G TL+D++YN+NPAS+ AVLGDM E+G S Sbjct: 314 PGRLQ-RHQLGALTLLDDAYNSNPASV----RAALTALAALPRPHTAVLGDMLELGAASA 368 Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H LAE + V G + AL +A PR++++ + + + + + Sbjct: 369 ELHRALAE--DTAALDAVVAVGPAMRALAEADPRAVYLEAFD-----LEALLALVPERGT 421 Query: 447 VVVKSSNSCGFYRLINLLLEEF 468 ++VK S RL LL + Sbjct: 422 LLVKGSRGVRLERLTEALLRRY 443 >gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 484 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 207/461 (44%), Gaps = 16/461 (3%) Query: 15 QGHSIGIVPQGFVNGISI---DSRSIAPQEAFF---AI---KGPHYDGHDFILHAVQKGA 65 G + + G+S D I P + A+ +G D + + Q+GA Sbjct: 23 GGWWLRPQQRQSYTGVSYLPGD---IQPGHLYVQPSALSWGRGYDKD-RESLQRVKQRGA 78 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV++ + + + V+ D AL +L AAR + ++ +TG+VGK+TTK Sbjct: 79 RAVVLDA--IPAEVPEGLSVYLAPDTSLALAQLGQAARALASHPLVCVTGTVGKSTTKRG 136 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L I L+ +T+ ++N++ GV LTLA P D +F + E + P Sbjct: 137 LAILLARCGRTHESQRNFNHYHGVTLTLADTPKDTEFSVLEFSSDLPRYTLPKALIAAPD 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT I H + +E IA K+ +F GL+ GT LN D +F + A + + G Sbjct: 197 VAVITEIQYDHTDCYPTLEAIADQKSLLFRGLKPEGTAVLNRDSPYFARMHAAARSYGAA 256 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + +FG S AD L+ + + + +S+ G H +N L L V Sbjct: 257 RVLTFGCSPLADVALQDCSRQRSGWQVRARCLDQSLTYTLPLPGRHDVRNSLAMLAGVVA 316 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + + A S P A+ G LID+S+++NPAS++AA+ L+ + Sbjct: 317 LGQDPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLIDDSFSSNPASLRAALETLALQAE 376 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 GRR+ VLG + E+GE S + H LA+++ L+ I V+ G H ALP + Sbjct: 377 GSPGRRLLVLGAIDELGERSDALHASLADLILLHRIDRVYAYGSHTRHTCAALPDHLVAL 436 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-NLLL 465 ++ L + + L D +V+K S L+ L Sbjct: 437 HTTEARELTQVLMADLQPDDWLVLKFSRHSRLGELLGQALR 477 >gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-175] Length = 513 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A+AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG + ADF+ + S S +++ + + Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GDV+++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 >gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 488 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 85/468 (18%), Positives = 146/468 (31%), Gaps = 41/468 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL ++ + + GI+ +S+++ P + F AI G DGH FI A+ GA Sbjct: 3 LRHLLDILEYEELYGSDAVDITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 V+ + IG S+P V D AL A ++KA +I ITG+ GKTTT Sbjct: 63 AVIGEKE----IGKQSVPYIKVTDSRKALALAAKRFYKNEQNKAIMIGITGTNGKTTTSY 118 Query: 125 MLTIALSSIKKTY-------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 ML L + T + N + ++ D + SH Sbjct: 119 MLKHILETCGHTCSLFGSVQNIVNGQVLPATTNTTMDALELQKQLAASNDQVVIMEVTSH 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + + + T ++ HL +E AK +FE L G + + Sbjct: 179 ALMQHRVYGI-EFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQLAPAGKAVIQAQGEW 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 E A + IY+ G ++ + Q+ + + ++V G H Sbjct: 238 GEAFLASLKQRDVPYIYTLGGAEATLQLSNVRIERPMQATLAEDHKAYDLKVPLL--GEH 295 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N + +L + + AL F GR + Y Sbjct: 296 NVYNAAIAFLTARLLGLNARKILAALEKFPGVPGRFELIHHPKGANIVID----YAHTED 351 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407 + + ++S I V G + +S + L+ Sbjct: 352 AFYHCLKTAEELSARR---IIHVFGFRG----NRDTSKRQAMVNVSKRFSDFIILTMDDL 404 Query: 408 -GFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 G ++ L + +GD V + Sbjct: 405 NGESFERMRKKLENYQLGENGVVIPDRTSAIAHAWELAENGDWVFITG 452 >gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 494 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 80/459 (17%), Positives = 152/459 (33%), Gaps = 42/459 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P + I +DSR + P F AI+G DG FI AV +GA V+ D +L Sbjct: 17 APALALTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEEDGEFVAPAL 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P G+ D+ L++LA + K ++ ITG+ GK+TT ++ + + Sbjct: 77 GVPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCTLLGGKAGV 136 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVR 183 +G+ N G+ L + + +S G ++ + Sbjct: 137 MGTIGN--GLFGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALP 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 AV T ++ HL +E +AK E+ + + + + D + L A A+ Sbjct: 195 FAAAVFTNLSRDHLDYHGTMEAYGAAKEELLKLVAEPCAVLNADDRLGRQWLAAYPAAVA 254 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + ++ + + +G N+L +G + Sbjct: 255 FSVHGPVAGHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLAAMGAM 314 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D D + + P GR + + + +A L + Sbjct: 315 LVLGYDFDELLASAPQLQPVTGRMECFGGGKAPLAVVDYAHTPDA-------LEKALQAL 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414 H EGR ++G G + ++ + V L+ + + + Sbjct: 368 RVHCEGRLWCLVG----CGGDRDRGKRPMMAAMAELHADRVILTDDNPRTEEPARIMADM 423 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L V S D+++V K Sbjct: 424 VAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKG 462 >gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium johnsoniae UW101] gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium johnsoniae UW101] Length = 487 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 70/474 (14%), Positives = 154/474 (32%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + S+ + I DSR + + F AI+G DGHD+I A+Q GA Sbjct: 4 LKDILYKVTIESVTGSTDIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDYIEKAIQLGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + + + V D AL +A +K ++ +TG+ GKTT Sbjct: 64 AIICDK--LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKLVGVTGTNGKTTIAS 121 Query: 125 MLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGI--FELGMS 170 +L + + + + G+ + +S Sbjct: 122 LLFQLFEKAGFKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNEMAEAGVTHCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T + + T ++ HL E K F+ L KT + N DD Sbjct: 182 SHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDSLPKTAFVLSNIDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ AD++ + + ++V ++++ Y Sbjct: 242 NGSVMLQNTAAKKL----TYALKSYADYRAQILESQLSGLLLKVNDNEVWVKLIGTFNAY 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ + + +++AL + E R++ ++ T + + Y P Sbjct: 298 NVLAIYGTAVELG-------IDSLEALRLLSDLESVSGRFQYIVSDNGITAVVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 +++ + ++ I E V G + ++ L+ Sbjct: 350 DALENVLKTINDIRTKNEQLITVV-----GCGGNRDKTKRPIMAKIATDLSDKAILTSDN 404 Query: 409 ---FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + D + + + H + D++++ K Sbjct: 405 PRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKG 458 >gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] Length = 491 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 91/475 (19%), Positives = 161/475 (33%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+QAI + VN I+ DSR + P F I G DGH F A + G Sbjct: 1 MKLSELMQAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ ++IPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEK-----TVDVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG ADF+ + S S ++ G ++ Sbjct: 236 AVLNADDEESVRMQTATAAHVITFGIKAAADFRASNIQITSHGSTFDLDTPGGHFKLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L +D AI + +GR + + + Sbjct: 296 MIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHAGQDFPVIVDYSHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL IS E R V+G G+ + +A+V Y + V+ Sbjct: 356 DG-------LLNVLQTISEFAEKRVFVVVG---CGGDRDKGKRPQMAKVAVKYATNPVFT 405 Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P + E + S GDV+++ K Sbjct: 406 SDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGKG 460 >gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] Length = 491 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 88/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A+AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG + ADF+ + S S +++ + + Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GD++++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460 >gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] Length = 483 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 93/460 (20%), Positives = 168/460 (36%), Gaps = 40/460 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 I + I DSR + P FF I+G DGH +I A+ +GA ++V + +++ Sbjct: 6 ELYDIDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHSKELLE 65 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 I V++ L LN+++ K II +TGS GKT M+ A+S Sbjct: 66 KKN--GIIYILVENTLEELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYC 123 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHL 181 T + G + + + + S G Sbjct: 124 NTGYIGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDS 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V +AV+T I HL E+ AK ++FE ++ +G + LN DD F +K Sbjct: 184 VNFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKPSGWVVLNSDDENFLRIK----N 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++G + +D + ++ + S ++ +G + V + N+L + Sbjct: 240 STKGKILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVC 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + D ++A+ P EGR + + N + N I Sbjct: 300 TLIAMGCDEKMVLQAVKEVKPVEGRMELIKAKQNFSVIIDYCQHINN-----YEQIFEFV 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 +GR IAVLG G+ + ++ +V + Y + HV L+ G +V + Sbjct: 355 DSVRQNKGRLIAVLGAP---GKRNYKMRREIGKVANKY-LDHVILTQLDDRGENVYDICK 410 Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I + D++++ K Sbjct: 411 TIQAEIVDISSVIIPSRQVAIEQAIEIACKDDIILILGKG 450 >gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Oceanithermus profundus DSM 14977] gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oceanithermus profundus DSM 14977] Length = 417 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 169/457 (36%), Gaps = 42/457 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + + G + DSR++ P AF A+ G G + A+ +GA LV+ Sbjct: 3 LARVLGGRP--GPDARPARDLVWDSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVI 60 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 VDD AL +L R + ++GSVGKT+TKE L Sbjct: 61 --------GPQARDRGLQVDDPYRALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALA-- 110 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 A G+ N + + D + + ELG+ GE+ L L P + V+ Sbjct: 111 --RALDWPATEGNLNTPPALTRFFWHLSPDAEGAVVELGIDRPGEMDELLELTAPDLGVL 168 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T IAP HL +E +A K ++ H + + Sbjct: 169 TAIAPVHLEGLGSLEAVAREKLKLL------------AASPLRLAHVDLRHWGLPEGTRT 216 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G A+F + ++ + + +G A L L +L D Sbjct: 217 YGFDPAANFAGEALELGCAETR----FRYAGRTLRLGVLGRGAALAALAALAAAELLGRD 272 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 V A + L P GR + R +++SYNA+P +++AA+ VL++ G Sbjct: 273 VRVAAERLEALKPAPGRLEPLRAGGT----LWLNDSYNASPKAVEAALEVLARCP----G 324 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R VLG M E+G ++ +H++ AE + G A+ P + + Sbjct: 325 PRGVVLGTMRELGPEAERWHLEAAERVMAT-ADRALFVGEFAAAMAAGRPG---ATAAAS 380 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++ + V+VK S + RL+ + Sbjct: 381 VEEASERLPDWSRGLASVLVKGSRALALERLLEGIRA 417 >gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 460 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 112/479 (23%), Positives = 190/479 (39%), Gaps = 31/479 (6%) Query: 1 MNPL--WTFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQE-AFFAIKGPHYDGHDF 56 M L L I G + PQ V S R + FF K Sbjct: 1 MKELYPMRLGRLASLIGGRLLRGTPQTSVKHAVFGSTRHLREGVVLFF--KPQKN----- 53 Query: 57 ILH---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 + ++Q V+ + S V V D AL KL R +S+A I + Sbjct: 54 VEKQLRSLQIKRSAGVIAPKGWSRRIPPSHAVIEVSDPKQALWKLVHWQRAQSRAIFIGV 113 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGS GKTTTKEM LS+ K + + N + +P L + + E+GM+ G Sbjct: 114 TGSAGKTTTKEMAASILSTKYKVLKSVANNNLYSLMPGNLILLHPKHQVVVLEMGMAGFG 173 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 IR + +P + ++T + AH+ + +A AK E+ +GL GT+ LN DD Sbjct: 174 NIRKQCLVAKPSLGIVTNVGEAHVGKLGHSLANVARAKQELIDGLAPKGTLILNADDPGS 233 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + L + + + G K A + + K + G H Sbjct: 234 KRLNTRRFRGQV---ITLGIEKPATIRATRVKYTKNGMSFY----IGKVPYHIPVWGRHN 286 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L + + L K L F R +R + N + LI++ YNANP++ Sbjct: 287 IYNALAAIAVAKQLNVPTPWIQKGLQNFPAPRMRLQRIKGIKN---WLLINDCYNANPSA 343 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M A + VL + G+ + +AVLGDM +G+LS H + + ++ N S + G + Sbjct: 344 MVAGLKVL--MRVAGKKQSVAVLGDMHSLGKLSLQSHRQVGKFVARLNPSTLITVGPQAV 401 Query: 413 ALKDALPRSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + + ++ + + +++ ++ +G V+ K+S + +N + Sbjct: 402 QIAKGASAAGYKGKIRSLPNQPETVANYLRKNIPEGSVLYFKASRKTALEKTVNKIRSR 460 >gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 491 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 84/477 (17%), Positives = 161/477 (33%), Gaps = 47/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L++AI ++ ++ I+ DSR + P F I G DGH F A + G Sbjct: 1 MKLSELMEAIPVYTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ +++PV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEK-----TVDVTVPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ + + IG+ IG + V + E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIF 224 + SH + + +AV ++ HL +EE A AK+ G + Sbjct: 176 V-SSHALVQGRV-YGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNP 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + ++ + +FG K ADF+ K S S +++ + + Sbjct: 234 KVAVINIDDAESSRMQTATAAHVITFGIKKQADFRASNIKIASHGSTFDLRTPVGNFTLK 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + L ++ AI + +GR + + Sbjct: 294 IKMIGNFSVYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSAGQDFPVIVD--- 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y+ P S+ + + + + V + G+ + +A++ Y + + Sbjct: 351 -YSHTPDSLLNVLQTIDEFAEKR------VFVIVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 405 WLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + S + + +P S E F + GDV+++ K Sbjct: 404 FTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKG 460 >gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58] gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58] Length = 1025 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 131/477 (27%), Positives = 205/477 (42%), Gaps = 38/477 (7%) Query: 5 WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQ 62 WT H++ A G + P G+ I R S+ + ++G A + Sbjct: 558 WTAHNVAGATGGTWVRSPPEDWRATGLCI-YRPSLQDGDM-VVMRGE--------EDA-E 606 Query: 63 KG------------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110 +G A ++ + + +PV V + A+ L AR + + Sbjct: 607 RGIPPRQVNRVKPQARGIITSAPQ--AFADAELPVLSVRNNGDAVLALGRYARSMMRGKL 664 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 I +TGS GKTT ML AL K + N G+ LA + D + EL + Sbjct: 665 IGVTGSAGKTTMVAMLAQALRPWGKVGTSRLNANLPHGIGWNLASIAWDTPHVVMELAI- 723 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ L RP +AV T IA AHL + +A K+ IFEG+ T LN D + Sbjct: 724 --GRMKQNAALARPDVAVFTNIAAAHLEFHHDLATVARRKSAIFEGMAAGATAILNADMA 781 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++A + A + I S+G++ AD +L K +++E + M G Sbjct: 782 ELARVRALAMAREL-NIVSYGEAPQADIRLISRK----GNFLEAETPSGRMGYHLATPGR 836 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 HMA N L L + L+ + AL F P GRG + LIDE+YNANP Sbjct: 837 HMAVNSLAVLATLHALSLQPHRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEAYNANP 896 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ASM AA+ + + GRR+A+LG+M E+G ++ +H DLA + + +I V G Sbjct: 897 ASMAAALEL---LGAQAGGRRVAILGEMLELGPGAEGYHADLAPLATGLSIDVVHAVGPL 953 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 LP ++ + L + DGD+V+VK S+ G + ++ + E Sbjct: 954 YARFCADLPPRHRGIHAPDLATLHALWPELIRDGDIVLVKGSHGSGVHEIVRAIQAE 1010 >gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] Length = 491 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 79/454 (17%), Positives = 149/454 (32%), Gaps = 38/454 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 V+ + D+R + F AIKG DGH FI A++KGA +VV + G Sbjct: 21 DDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVVQEETDDIQG--- 77 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + + V++ AL LA +I +TG+ GKTT M+ K I Sbjct: 78 VTIVRVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIFRDQKDRTGLI 137 Query: 141 GSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 G+ IG + + +S + I+ + Sbjct: 138 GTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIALIQGRVWGIDVDT 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T HL + E A AK+ +F L T + + + Sbjct: 198 AVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEMGKNFAQDTATQ 257 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++G +A + S+ + ++++ + +G N+L G Sbjct: 258 VLTYGIKNDAMIKASNVNIHSQGTDFDLKVFEDEYHLHVKTVGMFNVYNLLAAFGAAYAN 317 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 V I++L F +GR + + + ++ L I+ Sbjct: 318 GVSVHAIIESLEKFPGVKGRLQLISSDCGISAIVDYSHTPDG-------LLNALETINEF 370 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS- 421 G V+G G+ + +A++ Y+ ++ S + D + Sbjct: 371 ASGDVYCVVG---CGGDRDATKRPKMAQIAVEYSNHPIFTSDNPRTEDPEKILDQMLSGV 427 Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +V ++ GD++++ K Sbjct: 428 PEKNVPVYLDRREAIQAAVNAANPGDIILIAGKG 461 >gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] Length = 491 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 88/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A+AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG + ADF+ + S S +++ + + Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSAFDLRTPIGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + + Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I+ E R V+G G+ + +A++ Y + ++ Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + A+ + +P S E F + GD++++ K Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460 >gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens FZB42] gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42] Length = 490 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 47/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LL + + + I +DSR + F IKG DGHDF A + Sbjct: 1 MKLTKLLTYLMAEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAEN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V ++ + +PV V AL+ L+ A + + +I ITG+ GKT+ Sbjct: 61 GAAAIVAEKEL-----DVDVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDV-DFGIF 165 T M+ + IG+ IG + T +M + D I Sbjct: 116 TTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIM 175 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223 E+ SH + + IAV T + HL +E+ A + G Sbjct: 176 EV-SSHALSLGRVHGC-DYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEK 233 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + A + I ++G +AD ++ + ++ + E+ + ++ Sbjct: 234 PKRAVLNADDKASAYFEKVTAAHILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQI 293 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N+L DT AL GR + Sbjct: 294 TVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVD-- 351 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P S++ ++ + EG+ V+G G+ ++ +AE+ Sbjct: 352 --YAHTPDSLENVLNTCKDM---TEGKLFVVVG---CGGDRDKTKRPKMAEIAVRIADEP 403 Query: 404 VWLSG----FHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ S LA+ + R + Y + F ++ GDVV++ K Sbjct: 404 IFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460 >gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] Length = 492 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 79/459 (17%), Positives = 150/459 (32%), Gaps = 46/459 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + ++ D+R + P F I G DGH+ AVQKGA LVV + + + Sbjct: 20 SENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGATLVVASEPI-----EV 74 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 ++PV V+D + A+ LA +I +TG+ GKTT +L K+ Sbjct: 75 AVPVIYVNDTMKAMAILAATFYHHPSQDLRVIGVTGTNGKTTVTHLLDYIFHDHKEKTGV 134 Query: 140 IGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 IG+ IG R D + +S ++ Sbjct: 135 IGTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSGVATCSMEVSSHSLVQGRVWGTDFD 194 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 IA+ T ++ HL +E+ A AK+ G +F + + Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKPKFAILNFDDPVGRSFEEKT 254 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++S+G + ADF+ + + + + + EV +G N L + Sbjct: 255 AARVFSYGIDQPADFKATDLSITNRGTRFNLNFENRVYEVQLQLVGKFNVSNALAAIAGA 314 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D+ + I+++ GR + + + + + ++VL+ + Sbjct: 315 YAAGLDLTSVIQSIEKISGVRGRFEIVKGDHDFAVIVDYAHTPDG-------LLNVLNAV 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 + G V+G G + ++ N V + + + Sbjct: 368 NEIKTGTVFCVVG----CGGDRDRTKRPIMAEIAQQNSDTVIFTSDNPRTEDPIAILHEV 423 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 D L + D+V++ K Sbjct: 424 VDGLEEGTY-QLIPDRREAIQAAIEQANTNDIVLIAGKG 461 >gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL N1-067] Length = 491 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 88/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + P V+ I+ DSR + F I G DGH F A + G Sbjct: 1 MKLNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V+ + ++IPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAVIAEKPI-----EVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG +NADF+ + S S ++ ++ Sbjct: 236 AVLNADDEESVRMQTATAAHVITFGIKENADFRATNIEITSHGSTFDLTTPAGKFKLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AI + +GR + + + Sbjct: 296 MIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I R V+G G+ + +A++ Y + V+ Sbjct: 356 DG-------LLNVLQTIDEFANNRVFVVVG---CGGDRDKGKRPQMAKIAVQYATNPVFT 405 Query: 407 SGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E + S GDV+++ K Sbjct: 406 SDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKG 460 >gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] Length = 488 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 151/466 (32%), Gaps = 46/466 (9%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 S + I +DSR + F IKG DGHD+ A +KGA +V ++ Sbjct: 12 NAPSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREV 71 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132 A +PV + AL L+ A + + +I ITG+ GKT+T M+ Sbjct: 72 DA-----DVPVIIIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRK 126 Query: 133 IKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIR 176 IG+ I + VD + E+ L R Sbjct: 127 AGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR 186 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 IA T + HL +EE A + G + + Sbjct: 187 VHGCDYD--IAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDP 244 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A + + ++G +AD K + + ++ S +V +G Sbjct: 245 ASAYFAQVTSAHLLTYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVY 304 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L I T + + GR + + Y P S++ Sbjct: 305 NVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVD----YAHTPDSLE 360 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FH 410 ++ + EG+ V+G G+ ++ +A++ V+ + + Sbjct: 361 NVLNTCRGL---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSEN 414 Query: 411 VLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 LA+ + + + Y + F ++ GDVV++ K Sbjct: 415 PLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460 >gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 315 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ KG Sbjct: 1 MTFRELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123 A +V ++ + ++P V D AL +L R + A+TGS GKTT K Sbjct: 59 AVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L + A G+ NN +GVPLTL + + + ELG S +GEI + L + Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT AH+ F G + I AK EI EGL+ GT LN +D F + + ++ Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRAGNRN 234 >gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 300 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ KG Sbjct: 1 MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123 A +V ++ + ++P V D AL +L R + A+TGS GKTT K Sbjct: 59 AVGALVEHEVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L + A G+ NN +GVPLTL + + + ELG S +GEI + L + Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT AH+ F G + I AK EI EGL+ GT LN +D F + + ++ Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRAGNRN 234 >gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] Length = 490 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 88/461 (19%), Positives = 159/461 (34%), Gaps = 46/461 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + I +DSR + F IKG DGHDF A + GA +V ++ Sbjct: 17 NDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL----- 71 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + +PV V AL+ L+ A + + +I ITG+ GKT+T M+ + Sbjct: 72 DVDVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQT 131 Query: 138 ACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181 IG+ IG + T +M + + I E+ SH + + Sbjct: 132 GLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVETAIMEV-SSHALSLGRVHGC 190 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 IAV T + HL +E+ A + G + + A Sbjct: 191 -DYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYF 249 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + I ++G +AD ++ + ++ + E+ + ++ +G N+L Sbjct: 250 ERVTAAHILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 DT AL GR + Y P S++ ++ Sbjct: 310 AATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVD----YAHTPDSLENVLNT 365 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415 + EG+ V+G G+ ++ +AE+ ++ S LA+ Sbjct: 366 CKDM---TEGKLFVVVG---CGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419 Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 + R + Y + F ++ GDVV++ K Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460 >gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chitinophaga pinensis DSM 2588] gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis DSM 2588] Length = 488 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 94/477 (19%), Positives = 164/477 (34%), Gaps = 47/477 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + + VN +SIDSR++ AF AIKG H DGH FI A+ + Sbjct: 1 MKTLRDILYNVSIREVHGSTDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +++ + + + V+ A +A K ++ +TG+ GKTT Sbjct: 61 GAAVIICEE--LPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFEL 167 +L S ++ + + N IG VP T VD + Sbjct: 119 IATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHTTPDAIHLNALLADMVDEGCEYVFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + ++ + + I HL +E K F+GL T N Sbjct: 179 EVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDGLPTTAFALTNL 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A S+ ADF+ + + M V + ++ Sbjct: 239 DDKRGNVMLQNTRAKK----QSYSLKTVADFKGKILENNLTGLIMTVNEKEVHFRLI--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G A N+L G +L D D ++ALS EGR A ++ + Y Sbjct: 292 -GEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGRFDYITSAKDRIIGIVD---YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ ++ + + E V G + + + + V L+ Sbjct: 348 HTPDALLNVLATIKNLRKGNEQVITVV-----GCGGDRDTAKRPVMAAAATEHSDKVILT 402 Query: 408 GFHVL-----ALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ + I VH S D++++ K Sbjct: 403 SDNPRSEDPVAIIQQMEAGIPVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKG 459 >gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens TA208] gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens LL3] Length = 490 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 89/461 (19%), Positives = 159/461 (34%), Gaps = 46/461 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + I +DSR + F IKG DGHDF A + GA +V ++ Sbjct: 17 NDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL----- 71 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + +PV V AL+ L+ A + + +I ITG+ GKT+T M+ + Sbjct: 72 DVDVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQT 131 Query: 138 ACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181 IG+ IG + T +M + D I E+ SH + + Sbjct: 132 GLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEV-SSHALSLGRVHGC 190 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 IAV T + HL +E+ A + G + + A Sbjct: 191 -DYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYF 249 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + I ++G +AD ++ + ++ + E+ + ++ +G N+L Sbjct: 250 ERVTAAHILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 DT AL GR + Y P S++ ++ Sbjct: 310 AATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVD----YAHTPDSLENVLNT 365 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415 + EG+ V+G G+ ++ +AE+ ++ S LA+ Sbjct: 366 CKDM---TEGKLFVVVG---CGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419 Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 + R + Y + F ++ GDVV++ K Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460 >gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 300 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 10/298 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS+++ F I DGH+++ A+ Sbjct: 10 MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPII--RVKDGHEYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G+IR L+ + Sbjct: 126 KDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIA 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P +A+IT I +HL EEIA AK EI +GL G N D+ L +++ + Sbjct: 186 QPDVAIITMIGQSHLKTLGSREEIAKAKFEIIDGLHDDGLFLYNGDEP----LLSQNINM 241 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 SFG+ D + ++ +V HG + + + + Sbjct: 242 LGIESKSFGRKYTNDLFPTNVQLDGYGVHFKLNHTKIQYDVPLHGKHNILNAIVGIAV 299 >gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 497 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 87/482 (18%), Positives = 164/482 (34%), Gaps = 49/482 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++L I + + GI+ +S+ + AFFAIKG DGH+FI A++ Sbjct: 1 MKLLKEIL--TDEKIIYGNQETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKN 58 Query: 64 GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 GA ++ + V S+ +I V D+ +L + K +IAITG+ GKT Sbjct: 59 GASVIFIEDEKYVESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-------IGVPLTLARMPVDVDFGIFELGM---- 169 TT +L IG+ N G + + G Sbjct: 119 TTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVV 178 Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S ++ + + H + T + HL +E AK IFE +++ + Sbjct: 179 AEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIY 238 Query: 227 YDDSFFEL------LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + E + I ++GK + DF++ ++ ++ + + Sbjct: 239 SINVDDEYGRRILDYLKNHLKVNDDKIITYGK-TSEDFKILDYRLSLFETEFSYKYKDTL 297 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 ++ G N+ + + D+ + P +GR + QGF Sbjct: 298 SKIKTKLRGVFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGR---FEVIEGQGFIV 354 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +ID ++ + ++L ++ E R IAV G G L + Sbjct: 355 VIDYAHTPDALE-----NILKSLNEIKENRIIAVFGA----GGNRDKTKRPLMGETAEKL 405 Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 V L+ + + D + V S + D++++ Sbjct: 406 SDIVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAG 465 Query: 450 KS 451 K Sbjct: 466 KG 467 >gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 328 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +L+ + +G +G+S DSR I P + F A+ GP +DGH+++ KG Sbjct: 1 MTFSELVVPLDALLVGG--DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123 A +V ++ + ++P V D AL +L R + A+TGS GKTT K Sbjct: 59 AVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML L + A G+ NN +GVPLTL + + + ELG S +GEI + L + Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 PH+A+IT AH+ F G + I AK EI EGL GT LN +D F + + ++ Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRAGDRN 234 >gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 483 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 86/477 (18%), Positives = 172/477 (36%), Gaps = 54/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ + I P ++G+ DSR + F AIKG DG ++ A++ G Sbjct: 1 MKLIDILKGVNCE-IKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + ++ G I V+D A+ K+A K T+I +TG+ GKT+ Sbjct: 60 AVAVVTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ML L +G+ N IG L + V + + E Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S IAV T ++ HL +EE A K+++F+ + I ++ Sbjct: 177 V--SSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKSASVINID 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A + + + +VQ++ K E+ Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLK 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ +ID ++ Sbjct: 289 IPGIFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFELVETGKDFYVIIDYAH 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I + G G L ++ L Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + + E + ++ DV+++ K Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKG 453 >gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] Length = 491 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 147/451 (32%), Gaps = 45/451 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P + F AI G YDGHDFI A GA ++V ++ + V Sbjct: 27 VRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHERELTDYLEKP--TYIRVT 84 Query: 90 DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D A +L +I +TG+ GKTTT ++ + + I + Sbjct: 85 DSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAGEPCGLISTVEYRD 144 Query: 148 GV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 G PL + EL SH + + R A+ T Sbjct: 145 GKITAPATHTTPEAGILFPLLATMRRNGMRAAAMEL-SSHALQQGR-INGARFRTAIFTN 202 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL +E AK F L + D F A+ + + +FG Sbjct: 203 LTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRLARDISGRQQV--TFG 260 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + AD+ + + +E S + + ++ +V + IG H N+ + + Sbjct: 261 MTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILAALDYGLKPE 320 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 AL+ GR + +R + + + + A +VL + +G+ Sbjct: 321 AISHALNRPIRVPGRLEPFR--ASPEGPVFYVDYAHTDDA----LKNVLEILRKITKGKL 374 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI 422 IAV G G + H+ L+ + + +P Sbjct: 375 IAVFGA----GGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQKIIDEIAAGIPAGT 430 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + GDVV++ K Sbjct: 431 SFETEPDRAQALRRAVAVARPGDVVLIAGKG 461 >gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 491 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 161/475 (33%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + P V+ I+ DSR + F I G DGH F A + G Sbjct: 1 MKLNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A VV + ++IPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAVVAEKPV-----DVTIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S ++ + +AV ++ HL +EE A AK+ G + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + +FG +NADF+ + S S + ++ Sbjct: 236 AVLNADDEESVRMQTATAAHVITFGIKENADFRATNIEITSHGSTFNLTTPAGKFKLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AI + +GR + + + Sbjct: 296 MIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++VL I R V+G G+ + +A++ Y + V+ Sbjct: 356 DG-------LLNVLQTIDEFANKRVFVVVG---CGGDRDKGKRPQMAKIAVQYATNPVFT 405 Query: 407 SGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E + S GDV+++ K Sbjct: 406 SDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKG 460 >gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate [Corynebacterium glutamicum] Length = 293 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 81/289 (28%), Positives = 124/289 (42%), Gaps = 39/289 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + T ++ + G G V+ + DSRS+ P F A+ G DGHDF Sbjct: 1 MITM-TLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAA 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL---------------------GALNK 97 A++KGA V+ + + +P V V AL++ Sbjct: 60 TAIEKGAVAVLAARE-------VDVPAIVVPPVKIQESNADIYAHEPDGHGAAVVEALSR 112 Query: 98 LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 LA + ++AITGS GKT+TK+ + L T A GS+NN +G+P T+ Sbjct: 113 LARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTV 172 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 R D + + E+ +G I+ LT + P IA + + AHL F E IA AK EI Sbjct: 173 -RCTTDTKYLVAEMSARGIGHIKHLTEIRPPRIAAVLNVGHAHLGEFGSRENIAQAKGEI 231 Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 + G LN DD F + ++ A + G++K +D+ Sbjct: 232 IEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYW 280 >gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580] Length = 488 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 83/462 (17%), Positives = 150/462 (32%), Gaps = 46/462 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + I +DSR + F IKG DGHD+ A +KGA +V ++ A Sbjct: 16 YAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREVDA-- 73 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +PV + AL L+ A + + +I ITG+ GKT+T M+ Sbjct: 74 ---DVPVIIIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGSR 130 Query: 137 YACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 IG+ I + VD + E+ L R Sbjct: 131 TGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGRVHGC 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 IA T + HL +EE A + G + + A Sbjct: 191 DYD--IAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASAY 248 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + ++G +AD K + + ++ S +V +G N+L Sbjct: 249 FAQVTSAHLLTYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVLT 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 I T + + GR + + Y P S++ ++ Sbjct: 309 AAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVD----YAHTPDSLENVLN 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414 + EG+ V+G G+ ++ +A++ V+ + + LA+ Sbjct: 365 TCRGL---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSENPLAI 418 Query: 415 KDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + Y + F ++ GDVV++ K Sbjct: 419 LNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460 >gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] Length = 486 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 150/476 (31%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ I + V + + DSR + F AI G +GH++I A++ G Sbjct: 1 MNLKTLLKNITIKTSLYVEDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + + V + AL +A K T++ +TG+ GKTT Sbjct: 61 ANAIVCEQ--LPQQPLPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FELG 168 +L + + + + V+ G+ + Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + T ++ + T + HL K F+ L T +N D Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ +AD++ + + + + +++ Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTHADYKAYIIESRFDGLLLRINQHEVWTKLI---- 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L ++L D + +S P GR + A Y Sbjct: 291 GEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQYAVSATGVITIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + ++ I H E V G + ++ +V L+ Sbjct: 347 TPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILTS 401 Query: 409 FHVLA-----LKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + + + GD++++ K Sbjct: 402 DNPRNEEPETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKG 457 >gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria innocua Clip11262] gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262] Length = 491 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+QAI ++ VN I+ DSR + P F I G DGH F AVQ G Sbjct: 1 MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +S+PV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A AK+ +F L + + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 K + I +FG + ADF + S S +++ + Sbjct: 236 AVLNADDKESVRMQTATAAHIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFALKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L V AI + +GR + + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + P S+ + + + + V + G+ + +A++ Y + ++ Sbjct: 352 SHTPDSLLNVLQTIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E + + GDV+++ K Sbjct: 406 SDNPRSEDPHAIIEDMIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKG 460 >gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] Length = 482 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 161/499 (32%), Gaps = 54/499 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L++++ + + + I DSR + + F I+G DGH + A G Sbjct: 1 MDLSLILKSLEYSFVKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V D+ + V D AL +A II ITG+ GKTT+ Sbjct: 60 AKVIVCEKDLEDLSCYKDCTIIKVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKTTS 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L +G+ N+IG + + E + Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V A+ T + HL E ++K +F+ + + + Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 K + ++G K+ D + S + + + + + Sbjct: 240 G-------EKVLKKALGNKVTYGVEKSCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L ++G + + T +AL GR + + G+ ++D ++ Sbjct: 293 GKYNIYNALGSIGACLLEGISLQTIKEALGDIS-VPGRCEIVTKNYDLGYDVIVDYAHTP 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L+ +GR I+V G G + + ++ Sbjct: 352 DGLE-----NILATAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSDLSDIAIITS 402 Query: 409 FHVL------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS------- 451 + +KD L + E + DV+VV K Sbjct: 403 DNPRTEDPSLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHEDYQIL 462 Query: 452 -SNSCGFY--RLINLLLEE 467 + F +I L++E Sbjct: 463 KDRTIHFDEREVIEELIKE 481 >gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL J1-023] Length = 491 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 88/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+QAI ++ VN I+ DSR + P F I G DGH F AVQ G Sbjct: 1 MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +S+PV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A AK+ +F L + + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 K + + +FG + ADF + S S +++ + Sbjct: 236 AVLNADDKESVRMQTATAAHVITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFSLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L V AI + +GR + + Y Sbjct: 296 MIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + P S+ + + + + V + G+ + +A++ Y + ++ Sbjct: 352 SHTPDSLLNVLQTIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E + + GDV+++ K Sbjct: 406 SDNPRSEDPHAIIADMIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKG 460 >gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL S4-378] Length = 491 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+QAI ++ VN I+ DSR + P F I G DGH F AVQ G Sbjct: 1 MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +S+PV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A AK+ +F L + + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 K + I +FG + ADF + S S +++ + Sbjct: 236 AVLNADDKESVRMQTATAAHIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFSLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L V AI + +GR + + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + P S+ + + + + V + G+ + +A++ Y + ++ Sbjct: 352 SHTPDSLLNVLQTIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P S E + + GDV+++ K Sbjct: 406 SDNPRSEDPHAIIEDMTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKG 460 >gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] Length = 486 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 73/474 (15%), Positives = 149/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L + + V+ I DSR I + F AI+G +GH+FI A+ GA Sbjct: 3 LKEILYKVALEVVHGSTDVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFIDKAIALGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V +T + + I V D AL LA K ++ +TG+ GKTT Sbjct: 63 AIVCDT--LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLVGVTGTNGKTTIAS 120 Query: 125 MLTIALSSIKKTY---------ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + P V+ + +S Sbjct: 121 LLYQLFKKAGFKVGLLSTVKILVDEIEHKATHTTPDSLTINYYLDKMVEAGCQYCFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T ++ V T ++ HL + K F+ L K N DD Sbjct: 181 SHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKKSFFDNLPKNAFALSNIDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + S+ AD++ + +++ Q + ++ Y Sbjct: 241 NGAVMMQNTKARKL----SYALKTYADYKAIIIENQLSGLLLKINEQEVWVRLIGTFNAY 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ + + + ++ L + E R++ +++ T I + Y P Sbjct: 297 NLLAIYGVAIELGIE-------KLEVLRLLSELESVSGRFQFIVSKQNITAIVD-YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 +++ +S ++ I E V G + ++ L+ Sbjct: 349 DALENVLSTINDIRTRNEQLITIV-----GCGGDRDKTKRPIMANIASQMSDKAILTSDN 403 Query: 409 ---FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + I + D++++ K Sbjct: 404 PRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGKG 457 >gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] Length = 495 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 147/477 (30%), Gaps = 47/477 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL + + + ++ DSR++ F +KG DGH F+ A +KGA Sbjct: 5 LASLLALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V V + + + V D A+ + K +I +TG+ GKTT+ Sbjct: 65 AALVED--VPAEVPQGVTLIKVADTREAMELVTPYFYDYPGRKLRMIGVTGTNGKTTSTN 122 Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVPLT-------LARMPVDVDFGIFELG 168 ++ + L +H P A D+ + E+ Sbjct: 123 IIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEV- 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + AV+T I HL +E AK+ +FE L N Sbjct: 182 -SSHALALKRVAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAV 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + A + ++G+ + D + + + + M++ Sbjct: 241 FNMDDPSSAIIRERTKANVLTYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMDLELKIT 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ +G + D D L F GR + + + Sbjct: 301 GEFNVYNVMGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLVEAGQPYTVIVDYAHTPDG 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL G+ V G G + L L+L ++ ++ Sbjct: 361 -------LENVLKTARSITRGKLWVVFG----CGGDRDNKKRPLMGALALELADNIVVTS 409 Query: 409 FHVL---------ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + AL P HV + + D DV+++ K Sbjct: 410 DNPRTEDPELIIDEIFTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKG 466 >gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 501 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 90/483 (18%), Positives = 152/483 (31%), Gaps = 49/483 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L DL + PQ ++ + DSR I P + A+KG DGH+FI A Sbjct: 1 MKLLTLLKDLPSHT----LTGSPQVKISHLECDSRRILPGSCYIALKGTRADGHEFIPEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVG 118 +++GA VV + V+D A L A R T+I +TG+ G Sbjct: 57 IRRGACAVVAEMPCTQEAREAGVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMIGVTGTNG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFG 163 KTTT + L IG+ G + L M + G Sbjct: 117 KTTTAYIAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEMYENGCRG 176 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEK 219 + + +S + + ++ + T + HL +E A ++ + + Sbjct: 177 VS-MEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQMAQDTKS 235 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + + G T+ ++G + ADF++ ++ S E++ +GK Sbjct: 236 RRKPVAVINIDDAYGRRLAEMFSGRMTVKTYGSALGADFRMLVHHATAKGSEYELEYKGK 295 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S V IG N L L V V AI L GR + + F Sbjct: 296 SYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGRLELFTHPGGAQIF 355 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A +V + R I V G G L + Sbjct: 356 IDYAHTPDA-------LENVCKTLKELCSRRLITVFG----CGGDRDRGKRPLMGAAAAR 404 Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 ++ + + + +P GD+V++ Sbjct: 405 LSDACIVTSDNPRSEEPLSIISQIAAGMPEG-RYAIIPDRARAIATAIEQARLGDIVLIA 463 Query: 450 -KS 451 K Sbjct: 464 GKG 466 >gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 483 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 86/477 (18%), Positives = 170/477 (35%), Gaps = 54/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ + I P ++G+ DSR + F AIKG DG ++ A++ G Sbjct: 1 MKLIDILKGVNCE-IKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + ++ G I V+D A+ K+A K T+I +TG+ GKT+ Sbjct: 60 AVAVVTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ML L +G+ N IG L + V + + E Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S IAV T ++ HL +EE A K ++F+ + I ++ Sbjct: 177 V--SSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFKMAKSASVINID 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++G A + + +VQ++ K E+ Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIKDFAYVMAKDIRNSLSGVKFKVQIEDKKEEISLK 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + + +ALS +G+ + F+ +ID ++ Sbjct: 289 IPGIFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFELVETGKDFYVIIDYAH 345 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ + + GR+I + G G L ++ L Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396 Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ + + + E + ++ DV+++ K Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKG 453 >gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 492 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 81/460 (17%), Positives = 153/460 (33%), Gaps = 41/460 (8%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 IG +P ++ IS +SR + F I G DGH+F+ AV+ GA +V ++ ++ Sbjct: 16 IGKLPNT-ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREV--NL 72 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS---- 132 + + V D A+ LA TI +TG+ GKTT ++ L+ Sbjct: 73 DTNKATLIIVPDTNKAIATLAATFYKHPSHNLTIYGVTGTNGKTTVTTIINHLLTDNELS 132 Query: 133 ---------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHL 181 S N V + + G+ + M S G + Sbjct: 133 TALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAKNQGVTHVAMEVSSHGLEQGRLWG 192 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + +A T ++ HL +EE A+ K ++F L + + Sbjct: 193 IDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIAVLNRDDNWYEYFQK 252 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I S+G + ADF+ K +++ E+ S +V +G N+L + Sbjct: 253 RTPVQIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQTKLMGEFNVYNVLAAIA 312 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 V + + T + P G+ + + ID ++ + ++ Sbjct: 313 SVYVKESIPLTDLVKSIEGTPT-PPGRMEKLESSGNRHIYIDYAHTPDA-----LTKAIN 366 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKD 416 + P + + I V+G G L + +V L+ + Sbjct: 367 SLLPFKQNKLIVVVGT----GGDRDKSIRPLLAKAASV-ADYVILTINDPRHEDPNNILQ 421 Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + E + D++++ K Sbjct: 422 DLENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKG 461 >gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] Length = 482 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ I + + G++IDSR + F A++G DGH +I A++KGA Sbjct: 3 LSELLKAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124 V+ V I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AVLCED--VPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + +Y + +P D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + +R + T + HL +E AK + F+ + K N DD Sbjct: 181 SHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKGAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + + E + L + E+ H IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGKILESHFEG----MLLDFNNHELAVHFIGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS P GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSPKGITAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKIITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKG 457 >gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 481 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 85/460 (18%), Positives = 158/460 (34%), Gaps = 39/460 (8%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + V GI+ D+R + P + F IKG DGH F A + GA +V Sbjct: 6 LFNVEQDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCE----YE 61 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI----ALS 131 + +++IP V D L +LA + K + +TG+ GKTTT +L Sbjct: 62 LENIAIPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEG 121 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHL 181 + Y NH P P+ + E+ +S Sbjct: 122 HVGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHRVDY 181 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + +A+ T + P HL +++ AK ++FE L G +N DD + E L + Sbjct: 182 CQFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNR-LK 240 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 +Y++G +ADF+ S + ++ EV +G N L + Sbjct: 241 ESQTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMA 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++ I + P +GR FT+I + + VL Sbjct: 301 SAYSASMPMEQIIALIKTLSPVDGR---MEIINEGQDFTVIVDYAHTPDG----VEKVLE 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417 ++ + V+G G+ ++ +A++ Y ++ + + + + Sbjct: 354 FVTGIKQNGVKVVIG---CPGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILNE 410 Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + I + D+V++ Sbjct: 411 MVSGIKPMNYEVIVDRIEAIETAINKAQKNDIVLIAG-RG 449 >gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] Length = 487 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 77/473 (16%), Positives = 155/473 (32%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + S+ P VN I DSR + + F AI G DGHDFI A ++GA Sbjct: 4 LKDILYKVTLESVTGNPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKKAEEQGAI 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + I D AL +A ++ ITG+ GKTT Sbjct: 64 AIICEQ--MPEDFVNGITYVQTSDTAQALAVMASNYYENPSENLKLVGITGTNGKTTIAT 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMS 170 +L + + + +G M + + +S Sbjct: 122 LLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNEAGVEYCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T + + T ++ HL E K F+ L KT N DD Sbjct: 182 SHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDNLPKTAFALSNIDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 +++ + A + ++ AD++ + + ++V Q ++++ Sbjct: 242 NGQVMLQNTRAKKV----TYALKSFADYRAQILENQFTGLLLKVNDQEVWVKLI------ 291 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L I + + ++AL R++ ++ T I + Y P Sbjct: 292 -GSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYMISAKKITAIVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++K + ++ I E V G+ ++ + ++ + + V+ S Sbjct: 350 DALKNVLETINDIRTKNEELITVV----GCGGDRDRTKRPKMGKIAAALSTKVVFTSDNP 405 Query: 409 --FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + D++++ K Sbjct: 406 RSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKG 458 >gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl] gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl] gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl] gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl] Length = 816 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 91/464 (19%), Positives = 165/464 (35%), Gaps = 47/464 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++A G IG + S DSR E F A++ DGHD+I A+ GA Sbjct: 5 LAELIEA-GGTVIGPIHADTFTDWSYDSRLTVAGECFIALRTTRADGHDYIPAALAAGAR 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++ + + V D L + A R + T+IA+TG +GKT + + Sbjct: 64 GILCTRP---PHDAGTATVVVCPDPQALLLRWASNRLQRLQPTVIAVTGGIGKTLARRAI 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L++ T+ ++N+ +G+P+ LAR+ D + + E HL + P + Sbjct: 121 AAVLATHAPTFQSRRNFNSLLGLPIALARLERDHQYAVLEFAGEHLPPLAAAFP---PRL 177 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV+T + F + + + Sbjct: 178 AVVTAGTDDATARFLARQGVTV-----------------------------IAAEGVSSA 208 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 +FG + + V QG + + G L + + Sbjct: 209 HLTFGTGSGCAIRATAISYRRDGVDCVVIGQGLELPITIPLPGPPGVAAALAAVAVGLHY 268 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 +AL+ + R R ++D+S+NA P +M + L ++ Sbjct: 269 GVRPAAIRQALA---GLDAPAGRLRPLPGANGELILDDSFNATPEAM---RAALQTLAAI 322 Query: 367 GEGRRIAVLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSI 422 GRRIAVLG E+ + +L + ++ L G + A ++ Sbjct: 323 PTGRRIAVLGTPTELPAVDATPLLTELGMQAARS-AEYLVLKGMGAATMAQAARLANPTV 381 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +H +T + + + S D DVV+V +++ LL Sbjct: 382 TIHVVDTNEAIRAALPPSRNDQDVVLVSGGAGERLEQVVAPLLA 425 >gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 484 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 164/475 (34%), Gaps = 49/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I+ + + GI DSR+ F AIKG DG D+I A+++G Sbjct: 1 MRLADVLKDIEYTIVKGNVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+V+ I + V + +L K+A + +I +TG+ GKT+ Sbjct: 61 AVAVLVD---GEISIDKDITLIKVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSV 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 M+ L S IG+ N IG R+ VD + Sbjct: 118 TYMIKSILESQNNKVGLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S IAV T + HL +++ A+AKA++F + I ++ D Sbjct: 178 VSSHSLALNRVDECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLFRMAKTACVINIDDD 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 S + ++G A + K + + VQ++ ++ Sbjct: 238 YSSL------IIENSNAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALKIP 291 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + + IL + + AL + +G+ ++ + +ID ++ Sbjct: 292 GLFSVYNSLAAISVAFILGIPLQSVKIALKD---VKIKGRFEILDIDAPYNVVIDYAHTP 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + +++ + GR+I + G G ++ V ++ Sbjct: 349 DGLE-----NLMKAFGEYDTGRKILLFG----CGGDRDKGKRPKMGEVAGKYADFVIITS 399 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + E + S D D+V++ K Sbjct: 400 DNPRSEDPMQIISEIEMGIKNTKCPYKIIENRKEAIKYALSIAKDNDIVILAGKG 454 >gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 487 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 76/477 (15%), Positives = 149/477 (31%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + LL + + V + + DSR + F AI G +GH++I A + Sbjct: 1 MTNLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRS 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V + + + V + AL +A K T++ +TG+ GKTT Sbjct: 61 GATAIVCEQ--LPQLLFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKT---------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167 +L + Y + P + V + Sbjct: 119 IATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + + T + HL K F+ L T +N Sbjct: 179 EVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPSTAFALVNI 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + A ++ +AD++ + + + + +++ Sbjct: 239 DDKNGAFMLQNTKAQKK----TYALKTHADYKAHIIESRFDGLLLRINQHEVWTKLI--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G A N+L G ++L D A+ +S P GR + A Y Sbjct: 292 -GEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQYAVSATGVITIVD----YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + ++ I H E V G + ++ +V L+ Sbjct: 347 HTPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILT 401 Query: 408 G-----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + + + GD+V++ K Sbjct: 402 SDNPRNEEPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIAGKG 458 >gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis SJ95] gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95] Length = 430 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 178/439 (40%), Gaps = 25/439 (5%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 + IDSR + + F +KG DGH FI A++ GA V+V D+V + Sbjct: 10 HNFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVVDFPKE---KIIK 66 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+ VL + A + I ITGS GKTTTKE L L + KT+ + N I Sbjct: 67 VNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLAYFKTFRNEMNLNTEI 126 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 G+PL++ + + I E G+ G++ FL+ +A+IT + +HL +E +A Sbjct: 127 GIPLSILNNYNNEETVILEEGLRKKGDLEFLSRYFNLDVAIITNVGASHLEFLDSLETVA 186 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 K +I ++K I K A +FG D L+ ++ Sbjct: 187 EEKMKITSNMDKGVLIINGDYS------LLKELAPKHLNRLTFGTKDENDAVLKSFEYNE 240 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + +V + Q + + G++ + D+ L + + R Sbjct: 241 NHTTTFYARILQEDLMVTLNHYWSEGQILDLLSGLLLLRFIDLPVDPYYLFNINIPQDRF 300 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + +G ++++SYNA+ S S + I +I ++G++ E+G+ S+ Sbjct: 301 QTIK----RGNLLIVNDSYNASYESF---KSAFNSIKKWNLSPKIIIMGEIKELGKYSEE 353 Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 +HI + ++ + V + + + I S+ G V+ Sbjct: 354 YHIKVITEALNI-FDRIYFYDPQENFTY---LSNDKVTFFKELKK-IDEIISNTTKG-VI 407 Query: 448 VVKSSNSCGFYRLINLLLE 466 +K SN+ G + L E Sbjct: 408 YIKGSNTTGINK---YLKE 423 >gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] Length = 496 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 83/460 (18%), Positives = 163/460 (35%), Gaps = 45/460 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-------MVASIGS 80 N +++DSR + + F A+KG DG FI A+++GA LV+ D + + Sbjct: 21 NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFAN 80 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + V V ++ L+ +A A K T++ ITG+ GKTTT ++ + + A Sbjct: 81 STACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKSA 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182 +G+ N G+ + + + +S G ++ + Sbjct: 141 VMGTIGN--GLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYRAEAL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +A+ T ++ HL + +EE A AK +F L + D+ E L A+ Sbjct: 199 DFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVINADDEIGREWLAKLPEAV 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + T F + + + + + + +E + + E+ IG N+L Sbjct: 259 AVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTAFAG 318 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D+ I+ + + GR + N ++ Y P +++ A+ Sbjct: 319 LLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALDAA-- 376 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413 H EG V G G + L ++ V ++ + Sbjct: 377 -RLHCEGELWCVFG----CGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFND 431 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + DV+++ K Sbjct: 432 IMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKG 471 >gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] Length = 477 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 153/476 (32%), Gaps = 58/476 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L I + ++ DSR I F AI G +DGH FI A+ G Sbjct: 1 MNLTDILDKIDYIDYTKNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A +VV D+ I V D AL +++ K +I +TG+ GKTTT Sbjct: 61 ANTIVVTEDVTEID---DINYIKVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLARMP-----------VDVDFGIFE 166 M++ L + IG+ IG P T + +D + E Sbjct: 118 SSMISHILEHLDSPCTNIGTNGTFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVE 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S G + +AV+ ++ H+ +E AK +FE Sbjct: 178 C--SSHGLYLHRLDGIDFDVAVLNNLSMEHMDFHKNMENYFDAKMILFEN--------AK 227 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + Y+F +DF+ + + + + K+++ V + Sbjct: 228 KKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELIDGK----MHFEIKNVKFVLN 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 N + + V++L ++ K+L F E R + + + + Sbjct: 284 RFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVKNDMGINIVIDFAHT- 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + +R + M G+ + ++ ++ + N+ V Sbjct: 343 ---------PKAFENIYKSVPNDKRKIAVYGMS--GDRTSEIRHEVGKISAENNVFSVVT 391 Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + GD V++ K Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEIANKGDFVLLLGKG 447 >gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus Kuenenia stuttgartiensis] Length = 489 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 154/476 (32%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ ++ + + V G++ DSR + F AIKG DGHDFI A++KG Sbjct: 1 MKLSEICAVLEKYKCNSFTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A VV + +++P V + AL+ L+ SK TI+ ITG+ GKTTT Sbjct: 61 AIAVVAEKGVDYV---INVPQIVVPNARRALSLLSEYFYGYPSSKMTIVGITGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 + S IG+ +G + ++ + + E Sbjct: 118 SFFTKSIIESSGNKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDMLNNNIRYAVIE 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S + V AV T ++ HL I+ K ++ GL++ + LN Sbjct: 178 --ASSHALSQHRLDGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGLDENASAVLN 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + + + + ++ K +A + + + + Sbjct: 236 ADHTSSKYFAK---STVAQIVWYGIKDTSAHVRAEIINMGVNGTRFLLISPWGKEVIHLK 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L L D++ K L + GR ++ + ++ Sbjct: 293 LTGNHNVYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDYGQDFHVLIDYAHTH 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A VL + R I V G G ++ W+ Sbjct: 353 DA-------LQVVLETLRGIAARRIILVFG----CGGDRDKGKRAKMGHIAEKYSDLFWI 401 Query: 407 SGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + ++ + R GDVVV+ K Sbjct: 402 TNDNPRSEDPLNIIREIQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKG 457 >gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] Length = 487 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 157/474 (33%), Gaps = 41/474 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L ++ + + I +DSR + FF IKG DGHDF AV+K Sbjct: 1 MMKLSELTNVLRSYEWKNEGDPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA ++ ++ + +P V D + +LA SK +I +TG+ GKTT Sbjct: 61 GAVALIAEREV----KGVEVPTIIVQDTKRTMARLANLFYGDPTSKMNLIGVTGTNGKTT 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167 +L ++ K IG+ IG + VD D + Sbjct: 117 VTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEMVDADVETALM 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S IAV T + P HL +E AK +F L T Sbjct: 177 EVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEGKVA 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + + + ++G AD + + + ++ +S+E+ Sbjct: 237 VLNRDDEAADELLKMTTVDVLTYGVENKADIMAEDIEITARGTTFTLKAGTESIEIEMKL 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG N L ++ K+L H GR + +T+I + + Sbjct: 297 IGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGR---FEPVDAGQDYTVIVDYAH 353 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + + +VL+ + +G+ V+G G + ++ + + Sbjct: 354 TSDS----LENVLTTVREFAKGKISVVVG----CGGDRDRTKRPVMAEIATKYADNAIFT 405 Query: 408 -----GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + + + + D++V+ K Sbjct: 406 SDNPRSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKG 459 >gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] Length = 496 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 148/481 (30%), Gaps = 51/481 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L+ + G + + ++ DSR P F + G DGHD+I A GA Sbjct: 4 NLQELVALMPGCEVRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123 V+V ++ G + V V D A+ + K +I +TG+ GKTTT Sbjct: 64 VAVLVEKEVSVEPG---MTVIKVSDTRAAMQAITPFFFDYPSQKLRVIGVTGTNGKTTTT 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-------------RMPVDVDFGIFEL 167 ++ L IG+ + IG +P+ + +D+ + E+ Sbjct: 121 HLIRSILMQAGYKVGLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEV 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225 SH + I V T I HL E A A+ G Sbjct: 181 -SSHALALNRTAGC-EFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGK 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + + A ++G AD R ++ + E + + Sbjct: 239 SAVINTDDPAAAHMLREVTYRAITYGVQDGADLTARNINIQADGAKFEAVTTRGIIPLAL 298 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N+L +G+ + D AL F GR + FT+I + Sbjct: 299 QITGLFNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGR---FEIVDAGQPFTVIVD- 354 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P ++ + Q + IAV G G + L+ V Sbjct: 355 YAHTPDGLENILKTARQFAQRR---IIAVFG----CGGDRDRTKRPIMGRLAAEYADVVV 407 Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 + + +++ L S D+V++ K Sbjct: 408 ATSDNPRTEDPVSILKEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGK 467 Query: 451 S 451 Sbjct: 468 G 468 >gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] Length = 492 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 151/475 (31%), Gaps = 51/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL AI +I V GI+ DSR + P F AIKG DGH FI +A + GA Sbjct: 8 LKELLSAIDVIAISGPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGAT 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 + V V D AL LA K T++ +TG+ GKTTT Sbjct: 68 A---VVVEREVEVPADLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKTTTTH 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169 ++ + +G+ +N IG + +A M + G+ + + Sbjct: 125 LIAAIWRQVGLKPGVVGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVA-MEV 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S V+ +AV T I HL +E+ +AKA++ Sbjct: 184 SSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKL------FEKDIKYAVI 237 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + + +Y++G NAD + + + + V + G Sbjct: 238 NADDQAAEQLFKISRGKVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKLTG 297 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L + +L + AL GR + + + + Sbjct: 298 RFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVDQGQDFAVVVDYAHTPDG- 356 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 ++L+ +GR I V G G + ++ ++ Sbjct: 357 ------LENILTTARQITKGRLITVFG----CGGDRDRTKRPIMGEIAARYSDLPVVTSD 406 Query: 410 HVL---------ALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L Y + GDVVV+ K Sbjct: 407 NPRTEDPQKIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKG 461 >gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] Length = 483 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 81/456 (17%), Positives = 150/456 (32%), Gaps = 41/456 (8%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + + GIS DSR + P F A++G DG +I A+++GA +V + A + Sbjct: 15 NLSSMEITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIVTD--CHAVLED 72 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L +P+ V +V +L A T++A+TG+ GKT+ + + + A I Sbjct: 73 LPVPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASI 132 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHI 186 G+ + + L S G + VR Sbjct: 133 GTVGVVSPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTA 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ +G+E+ AK ++F+ L L + D + + Sbjct: 193 GAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVVTQARRR 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ + + + + +E +++ G N LM G+ Sbjct: 253 VLTIGRKGQF-ITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMAAGLAIAT 311 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 AL GR + N ID ++ VL + P Sbjct: 312 GVSPRKVFSALETLQGAPGRLEFVGKTENNA-PVYIDYAHKPEALE-----QVLLSVRPF 365 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDA 417 +GR I V G G L ++ V ++ + + A Sbjct: 366 TQGRLIVVFG----CGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEMPEKIRKDILQA 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P +I + + L GD +++ K Sbjct: 422 VPTAIEI---ADRGEAISYAVELLKAGDTLIIAGKG 454 >gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parasuis SH0165] gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis SH0165] Length = 496 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 86/487 (17%), Positives = 169/487 (34%), Gaps = 52/487 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPL +F +N +++DSR + + F A+KG DG FI A Sbjct: 1 MNPLLSFF-------PELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53 Query: 61 VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATII 111 +++GA LV+ D + + V V ++ L+ +A A K T++ Sbjct: 54 IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------- 164 ITG+ GKTTT ++ + + A +G+ N G+ + + Sbjct: 114 GITGTNGKTTTAQLFAQWRNLLGGKSAVMGTIGN--GLYGQVQEAVNTTGSAVEIQHNLA 171 Query: 165 ---------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + +S G ++ + +A+ T ++ HL + +EE A AK +F Sbjct: 172 NFVELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFG 231 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L + D+ + L A+ + T F + + + + + + +E + Sbjct: 232 ELSSKQQVINADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFE 291 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + E+ IG N+L + L D+ ++ + + GR + N Sbjct: 292 SSWGNGELKSRLIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEEN 351 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ++ Y P +++ A+ H EG V G G + L Sbjct: 352 AEESPMVIVDYAHTPDALEKALDAA---RLHCEGELWCVFG----CGGDRDTGKRPLMAR 404 Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 ++ V ++ + + + V + DV Sbjct: 405 IAEQLADRVIVTDDNPRTEDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDV 464 Query: 447 VVV--KS 451 +++ K Sbjct: 465 ILIAGKG 471 >gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] Length = 484 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 154/449 (34%), Gaps = 43/449 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I++DSR + F A+KG H DGHDFI A+ KGA ++ + +PV VD Sbjct: 22 ITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-DTQVPVCVVD 80 Query: 90 DVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNH 146 + L +LA K +I ITG+ GKT+T + + +L + ++ + Sbjct: 81 GLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGTNGQGL 140 Query: 147 IGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVITTIA 193 G DV E + +S G + + AV T ++ Sbjct: 141 WGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAVFTNLS 200 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E AK + +N DD + + + + A ++++ Sbjct: 201 RDHLDYHHSMEAYFEAKWRL-MRWPGLRNAVVNLDDEWVQKNRERIMAE---RVWTYALE 256 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 +AD Q + +V+ +++ +G N L L ++ V+TA Sbjct: 257 TDADVQALEVNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVPVNTA 316 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + +S +P +GR + R A + + +A L H GR + Sbjct: 317 ARVISNCNPVKGRMETLRSAYSPTVVVDYAHTPDA-------LEKALQSCREHVNGRLVV 369 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHV 424 + G G ++ V ++ + ++ + Sbjct: 370 IFG----CGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQGFSTEANY 425 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + DVV++ K Sbjct: 426 RVIPDRREAIVQTLNDSERSDVVLIAGKG 454 >gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] Length = 486 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 162/477 (33%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + +I V G+ DSR++ + A KG DGHDFI HA+ Sbjct: 1 MKTLQDILYGVSIEAIVGATTIPVKGVVFDSRNVKIDFVYVAQKGVQVDGHDFISHAISN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA ++V + + + V++ L LA K T++ +TG+ GKTT Sbjct: 61 GAKVIVCE--FIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA------------RMPVDVDFGI--FEL 167 +L SS + + G + V+ G+ + Sbjct: 119 IASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVESGVTHCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + + ++ + + + HL + K + F+ L KT N Sbjct: 179 EVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDSLPKTAFALTNV 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + A Y++ ++ADF+ + + +++Q Q ++ Sbjct: 239 DDKNGTYMLQNTVAKK----YTYAIKQHADFKAQILECQFSGMLLKIQSQEVWTSLI--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 A N L + ++ + ++ L + R++ T++ + Y Sbjct: 292 ----GAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTLQTPNKVTVVVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + ++ I E + G L ++ V + Sbjct: 347 HTPDALENVLQTIATIRTRNETLITVI-----GCGGNRDQEKRPLMAKAAVNFSDKVIFT 401 Query: 408 G-----FHVLALKDALPRSIHVHYSET------MDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + + +GD+V++ K Sbjct: 402 SDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKG 458 >gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 489 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 82/478 (17%), Positives = 160/478 (33%), Gaps = 49/478 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L++ + ++GI+ DSR + P + F I G DGH F A++ G Sbjct: 1 MKLVELIKNLTIELQDGPLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+ + + D AL LA R ++A+TG+ GKTTT Sbjct: 61 AVAVLAERQLDTGGK---ATLLTTPDTRSALALLAANYYGRPSKSIRVVAVTGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166 +++ L K A +G+ +G + D+ + E Sbjct: 118 TDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALCREEKADYIVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH +++ + + ++AV T + HL ++ +AK ++F+ +++ + Sbjct: 178 V-SSHALQLQRVAEI-DFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYAI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + S+G K +D+Q + K + S + S+ + Sbjct: 236 INID--DPWAEEIFQAATIPCRSYGIKKRSDYQAGELKIDLDGSSFRLHYGDNSLMINMK 293 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N L + D AL+ GR ++ C + + Sbjct: 294 LIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQDFAVIVDYAHTP 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L G+ R I V G G L ++ + Sbjct: 354 DG-------LENILQTSRELGKKRLICVFG----CGGDRDRSKRPLMGEIAAKYSDFCVV 402 Query: 407 SGFHVLA------LKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + +P V GD+VV+ K Sbjct: 403 TSDNPRSEDPHAIIAEIIPGMDKVEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKG 460 >gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482] Length = 773 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 9/382 (2%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V + L AL KLA A R K +I ITGS GKT KE L LS + SYN Sbjct: 33 FLIVANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYN 92 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 + IGVPL++ ++ + + GIFE G+S +GE+ L +++P I ++T I AH NF ++ Sbjct: 93 SQIGVPLSVWQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQ 152 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 E K +F+ + + L + A + T S + Sbjct: 153 EKCMEKLTLFKDCDVV-------IYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYIS 205 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + +++ V I + ++ L ++ + A + E Sbjct: 206 KVTKKEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLE 265 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 R + LI++SYN++ AS+ A+ L + S +R +L D+ E G+ Sbjct: 266 PIAMRLEVKEGKNNCILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQS 325 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVD 443 + + + +A+++ I+ + G + + + ++ D L I +L Sbjct: 326 TATLYRRVAQLIKSRGINKLIGVGAEISSCAARFEGTPERYFFPDTDALLRSGIFKTLHS 385 Query: 444 GDVVVVKSSNSCGFYRLINLLL 465 +V+++K S F + L Sbjct: 386 -EVILIKGSRVFNFDLVSEELE 406 >gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] Length = 482 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 90/474 (18%), Positives = 160/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 ++ + I V D A+ K+A + ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K+ N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2] gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2] Length = 495 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 147/482 (30%), Gaps = 51/482 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L + + + + GI DSR + P + F + G DGH + A KG Sbjct: 1 MRLSELAELLITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A VV ++ L P V D A+ LA +I +TG+ GKTTT Sbjct: 61 AVAFVVEREL-----ELDAPQLIVKDSRLAMAVLADHFYGHPSNALHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI--------GVPLTLARM------PVDVDFGIFELG 168 ++ L+ + IG+ G ++ + Sbjct: 116 TYLIEQILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSDMRKEGTAYCAIE 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIF 224 +S + R AV T + HL +E+ A+AK F L Sbjct: 176 VSSHALEQGRVKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRLGNEYAAKAEDR 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + L + ++G +AD + + ++ + V ++ Sbjct: 236 AYAVLNVDDPVSEQFAKLTAAEVITYGIDNHADVRASNIRISAQGTTFRVSTFRGKTDIA 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + I ++ +L GR + + Sbjct: 296 LQMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQAGQEFAVVVD--- 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ + + +++P I V G G + ++ +V Sbjct: 353 -YAHTPDGLENVLRAVKELAPPR---IICVFG----CGGDRDRTKRPIMGSIAARYADYV 404 Query: 405 WLSGFHV---------LALKDA-LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV-- 449 ++ + ++ L I E GDVV++ Sbjct: 405 LVTSDNPRTEDPDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVLIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga ochracea DSM 7271] gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea DSM 7271] Length = 486 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 151/476 (31%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ I + V + + DSR F AI G +GH++I A++ G Sbjct: 1 MNLKTLLKNITIKTSLYVEDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 A +V + + V + AL +A +I +TG+ GKTT Sbjct: 61 ATAIVCEQ--LPQQPLPGVSYIVVPNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FELG 168 +L C + + + + V+ G+ + Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + T ++ + T + HL K F+ L T +N D Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ +AD++ + + + + +++ Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTHADYKAYIIESRFDGLLLRINQHEVWTKLI---- 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L + + T I+AL++ E R++ A++ I + Y Sbjct: 291 ---GEFNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQYAVSATGVITIVD-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + ++ I H E V G + ++ +V L+ Sbjct: 347 TPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILTS 401 Query: 409 FHVLA-----LKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + Y + + GD++++ K Sbjct: 402 DNPRNEEPETILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKG 457 >gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Amoebophilus asiaticus 5a2] gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus 5a2] Length = 487 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 149/474 (31%), Gaps = 45/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL + I + I +DSR F A+ G DGH +I A+ G+ Sbjct: 4 LQELLNKVSVQQIIGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + + V +V AL +A K ++A+TG+ GKT+T Sbjct: 64 AIICEK--YPEHLATHVTYIQVSNVTQALGTIASNFYKNPSTKLKLVAVTGTSGKTSTVH 121 Query: 125 MLTIALSSIKK---TYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFELGMS 170 +L + + I + N P V + S Sbjct: 122 LLYRLFRQLGYSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVTAGCQFCFMEAS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ + A+ I+ HL + AK ++F+ L + N DD Sbjct: 182 SHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDELTANAFVLYNIDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 +++ + A T YS + ADF + + + + Q +++ G Sbjct: 242 RGKIMIQNTRA----TTYSMAIQRPADFTAQVLANTWQGLELRIGGQNVWFQLL----GT 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L +L + ALS P GR + +ID ++ Sbjct: 294 FNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQHIHTPKKPD--VIIDYAHKPEA 351 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + S +G+ I ++G G + + ++ + L+ + Sbjct: 352 LEKILLSIQQIRESAKQQGKIITIIG----CGGNRDTQKRPMMARIAYKLSDQLILTSDN 407 Query: 411 VL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 +K L + + D++++ K Sbjct: 408 PRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKG 461 >gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 497 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 161/482 (33%), Gaps = 49/482 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++L I + V GI+ +S+ + AFFAIKG DGH+FI A++ Sbjct: 1 MKLLKEIL--TDEKIIYGNQETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKN 58 Query: 64 GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 GA ++ + + S+ +I V D+ +L + K +IAITG+ GKT Sbjct: 59 GASVIFIEDEKYIESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-------IGVPLTLARMPVDVDFGIFELGM---- 169 TT +L IG+ N G + + G Sbjct: 119 TTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVV 178 Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA---SAKAEIFEGLEKTGTI 223 S ++ + + H + T + HL +E E + K Sbjct: 179 AEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIY 238 Query: 224 FLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 +N DD + + I ++GK + DF++ ++ ++ + + Sbjct: 239 SINVDDEHGRRILDYLKNHLKVNDDKIITYGK-TSEDFKILDYRLSLFETEFSYKYKDTL 297 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 ++ G N+ T+ + D+ + P +GR + QGF Sbjct: 298 SKIKTKLRGVFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGR---FEVIEGQGFIV 354 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +ID ++ + ++L ++ E R I V G G L + Sbjct: 355 VIDYAHTPDALE-----NILKSLNEIKENRIITVFGA----GGNRDKTKRPLMGETAESL 405 Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 V L+ + + D + V S + D++++ Sbjct: 406 SDVVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAG 465 Query: 450 KS 451 K Sbjct: 466 KG 467 >gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] Length = 498 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 90/485 (18%), Positives = 149/485 (30%), Gaps = 54/485 (11%) Query: 4 LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T +L + I+G I + GIS DSR I F I G H DG F AV+ Sbjct: 1 MKTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 KGA V+ N + L I V D+ AL + K +I +TG+ GKT Sbjct: 61 KGAVAVLTNKHLD---LPLEITQITVPDIHAALEDIVPYFYDYPGKKMRMIGVTGTNGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TT ++ L IG+ + + + + EL Sbjct: 118 TTSHIIAHILREAGYHVGVIGTIHA---LIDDKELEIHNTTPDVVELQALLALMCAEGMD 174 Query: 181 L-----------------VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221 + AV T + HL E A AK E Sbjct: 175 YVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPV 234 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + ++G K+AD + + + S +V S+ Sbjct: 235 KKNKTAVINIDDPHADEILKATSCKVLTYGVEKDADLKGSNLQVGLKSSSFDVVGPFVSV 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + H G N L +G D D KA+ F+ GR + + Sbjct: 295 SLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELVEAGQDFAIVVD 354 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y+ P S++ A++ + P+ I V G G + ++ Sbjct: 355 ----YSHTPDSLEKALTTARAMKPNR---IITVFG----CGGDRDRTKRPIMGGIAAQYA 403 Query: 402 SHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 ++ + + ++ AL GD+V+ Sbjct: 404 DIPIVTSDNPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGDIVL 463 Query: 449 V--KS 451 + K Sbjct: 464 IAGKG 468 >gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] Length = 517 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 101/480 (21%), Positives = 166/480 (34%), Gaps = 47/480 (9%) Query: 7 FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +L+ + G V+G+S DSR I P F A++G DGH I A++ Sbjct: 13 LGELIDGLGGLVDRRGACASDRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEA 72 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTT 121 GA +V + + V + AL +L+ + +I +TG+ GKTT Sbjct: 73 GAVAIVCEA--YPAELRDGVCYLRVTESRKALAELSKNCYGNASDQLMLIGVTGTNGKTT 130 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165 T +++ L++ IG+ IG L + + Sbjct: 131 TARLISSMLNAAGIPAGYIGTGLCRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVM 190 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH + + H +R AV T + P HL +EE A+AK +F L G L Sbjct: 191 EV-SSHALVLDRV-HGLRFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSRLTDDGFAVL 248 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSM 281 N DD + A + G S D F+ E S EV +S Sbjct: 249 NADDPQAGFMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSA 308 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + G + NML + L D A+ L+ GR +R A + Sbjct: 309 TMQVPLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSADRSRCGVV 368 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P +++ A+ L ++P G V G G + ++ + + Sbjct: 369 D---YAHTPDALQKALETLRAVTPSGSK-LSVVFG---CGGNRDRKKRPEMGRIAAEL-A 420 Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + D + + L GD+++V K Sbjct: 421 DRVILTSDNPRDENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKG 480 >gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] Length = 487 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 85/477 (17%), Positives = 161/477 (33%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL + + + I DSR I P + F A +G + DGH FI A+ + Sbjct: 1 MKKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA VV + + D AL +A ++ +TG+ GKTT Sbjct: 61 GAVAVVCEQ--LPENRPEEVTYIWTADTSEALGVMAGNYWDNPSRELKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167 T +L + + + + N+IG L R VD + Sbjct: 119 TATLLYELVRLAGEKAGLLSTVCNYIGEEKIPATHTTPDALSIQELLRRMVDAGCRYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + + A+ + I HL + AK F+ L N Sbjct: 179 EASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKKAFFDRLPAHAFALTNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A Y++ ADF + ++ + + + + + + Sbjct: 239 DDKNGLVMLQNTRA----HRYTYSCRTMADFTAKAIEKHLDGTLLRLDGEEVWTKFT--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G A N+L +L + ++ +S+ P GR + + Y Sbjct: 292 -GDFNAYNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETLISTEG----VMAVVDYA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ +S + + GR V+ + G+ ++ ++A+ Y+ HV L+ Sbjct: 347 HTPDAVENVLSTICGLK----GRDNQVITVVGAGGDRDKTKRPEMADAACRYS-DHVILT 401 Query: 408 GFHVLA------LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++D L V GD+++V K Sbjct: 402 SDNPRSEDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIILVAGKG 458 >gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] Length = 499 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 83/483 (17%), Positives = 160/483 (33%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I + F + G DG H F+ AV Sbjct: 10 LKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT ++ LS +G+ +G + D+ Sbjct: 123 TTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL +E K+ G + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + ++G AD Q + + V + Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEI 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV + +G N L + + + + +LS EGR + + Sbjct: 301 EVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVIVD 360 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 361 YAHTPDA-------LENVLSTISEFAKGKIITVFG----CGGDRDAKKRSIMGGIAGSYS 409 Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ ++ +++Y E + + D+V++ Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] Length = 496 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 86/487 (17%), Positives = 170/487 (34%), Gaps = 52/487 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNPL +F +N +++DSR + + F A+KG DG FI A Sbjct: 1 MNPLLSFF-------PELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53 Query: 61 VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATII 111 +++GA LV+ D + + V V ++ L+ +A A K T++ Sbjct: 54 IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------- 164 ITG+ GKTTT ++ + + + A +G+ N G+ + + Sbjct: 114 GITGTNGKTTTAQLFSQWRNLLGGKSAVMGTIGN--GLYGQVQEAVNTTGSAVEIQHNLA 171 Query: 165 ---------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + +S G ++ + +A+ T ++ HL + +EE A AK +F Sbjct: 172 NFVELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFG 231 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L + D+ + L A+ + T F + + + + + + +E + Sbjct: 232 ELSSKQQVINADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFE 291 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + E+ IG N+L + L D+ ++ + + GR + N Sbjct: 292 SSWGNGELKSRLIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEEN 351 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ++ Y P +++ A+ H EG V G G + L Sbjct: 352 AEESPMVIVDYAHTPDALEKALDAA---RLHCEGELWCVFG----CGGDRDTGKRPLMAR 404 Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 ++ V ++ + + + V + DV Sbjct: 405 IAEQLADRVIITDDNPRTEDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDV 464 Query: 447 VVV--KS 451 +++ K Sbjct: 465 ILIAGKG 471 >gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. AR 15-3] Length = 484 Score = 153 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 88/482 (18%), Positives = 153/482 (31%), Gaps = 49/482 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + GIS DSR + P F A+KG DG +++ A+++GA +++ + + V +LS Sbjct: 17 ASIEITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVIITDNNFV--FENLS 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136 IPV V +V L A ++A+TG+ GKT+ + + Sbjct: 75 IPVIHVSEVRHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIGT 134 Query: 137 -----YACIGSYNNHIGVPLTLARMPVD--VDFGIFEL--GMSHLGEIRFLTHLVRPHIA 187 P+ L R+ + D G+ S G + V A Sbjct: 135 VGVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRIDGVHLAAA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + H+ IE+ AK +F + L + D + + + Sbjct: 195 AFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVRQAHRKV 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G++ L + + + +E ++ G N LM G+ Sbjct: 255 LTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAAGLAIATN 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A D ++L GR + G +D ++ VL + P Sbjct: 314 APPDMVFRSLEKLQGPPGRLELV-GKTKDGAPVYVDYAHKPEALE-----QVLLSVRPFT 367 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPRS 421 +GR I V G G L ++ V ++ + KD L Sbjct: 368 QGRLILVFG----CGGDRDRGKRALMGKIAENKADVVIVTDDNPRTEAPEKIRKDILQVV 423 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS-------SN-----SCGFYRLINLLLEE 467 + L GD ++V K S ++I L E Sbjct: 424 PEAIEIADRGKAIDYAVRLLKAGDTLIVAGKGHENGQIIGRETYPFSDRL-KVIAALKER 482 Query: 468 FP 469 Sbjct: 483 DK 484 >gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] Length = 194 Score = 153 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 3/193 (1%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++ QAIQ H+ + V ++ DSR++ F +KG DGH ++ A + Sbjct: 3 MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + D P VDD L AL +L + ++A+TGS GKTTTK Sbjct: 62 GAKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 +M+ L++ ++NN IGVP+TL M + + + E+GM G++ L+ L Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180 Query: 184 PHIAVITTIAPAH 196 P IAV+T I AH Sbjct: 181 PDIAVVTMIGEAH 193 >gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] Length = 500 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 85/464 (18%), Positives = 164/464 (35%), Gaps = 49/464 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-----------MVA 76 N +++DSR + + F A+KG DG FI A+++GA LV+ D Sbjct: 21 NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFAK 80 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 + + + V V ++ L+ +A A K T++ ITG+ GKTTT ++ + + Sbjct: 81 NHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLG 140 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFL 178 A +G+ N G+ + I + +S G ++ Sbjct: 141 GKSAVMGTIGN--GLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYR 198 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +A+ T ++ HL + +EE A AK +F L + D+ E L Sbjct: 199 AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVINADDEIGREWLAKL 258 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A+ + T F + + + + + + +EV+ + E+ IG N+L Sbjct: 259 PEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGELKSRLIGAFNVSNLLT 318 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L D+ I+ + + GR + N ++ Y P +++ A+ Sbjct: 319 AFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALD 378 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 H EG V G G + L ++ V ++ + Sbjct: 379 AA---RLHCEGELWCVFG----CGGDRDTGKRPLMARIAEQLADKVIVTDDNPRTEDPDV 431 Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + DV+++ K Sbjct: 432 IFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKG 475 >gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] Length = 484 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 80/497 (16%), Positives = 152/497 (30%), Gaps = 59/497 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L I + ++ I DSR + P F A++G DGH++I A++ GA Sbjct: 4 LSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V +IG + V D AL ++A K ++ +TG+ GKTT Sbjct: 64 AIVCEDLPAHTIGE--VAFMMVADSAVALGQIAANFYDHPSDKLKLVGVTGTNGKTTVAT 121 Query: 125 MLTIALSSIKKTY--------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +L + V +L V+ + +S Sbjct: 122 LLYQLFHDLGYKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGCDYCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL + AK F+ L K+ N DD Sbjct: 182 SHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKKAFFDALPKSAFALTNIDDR 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A ++ AD++ + + +++ + ++V G Sbjct: 242 NGNIMLQNTRAQRK----TYALKSLADYKAKILENQFGGLLLDIDNEEVWFKMV----GS 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L D + +LS EGR Y P Sbjct: 294 FNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFDYIISPNKVIGIVD----YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +++ +S + I E + G + ++ V L+ + Sbjct: 350 DAVQNVLSTIHDIRKGTEKVITII-----GCGGDRDKTKRPIMAKVACQWSDKVILTSDN 404 Query: 411 VLA------LKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV----------- 448 + ++D GD+++ Sbjct: 405 PRSEVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHEKYQE 464 Query: 449 VKS--SNSCGFYRLINL 463 VK S+ LI Sbjct: 465 VKGVRSHFDDKEELIKA 481 >gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 492 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 81/483 (16%), Positives = 153/483 (31%), Gaps = 54/483 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAV 61 +L + + G+ IDSR I F + G + D H F+ AV Sbjct: 1 MKLKELANLLLVKETIGDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAV 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A K +I ITG+ GK Sbjct: 61 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L S +G+ +G + D+ Sbjct: 116 TTTSYLLEKIFSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYC 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL +E K G + + Sbjct: 176 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLST 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 T + + + + ++G AD Q + + V + Sbjct: 234 TEKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIHFLVSSFNGEI 293 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV + +G N L + + + + + S EGR + + Sbjct: 294 EVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEIIDENQDFLVIVD 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 354 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 402 Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ +++ + + D+V++ Sbjct: 403 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 462 Query: 450 -KS 451 K Sbjct: 463 GKG 465 >gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] Length = 491 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 75/459 (16%), Positives = 143/459 (31%), Gaps = 48/459 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLS 82 V+ ++ +S+ + FFAIKG DGH FI A++ GA VV++ S Sbjct: 19 KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYPD 78 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + D++ +++ K +I +TG+ GKTT +L L K I Sbjct: 79 VTFVISDNIRKTQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGII 138 Query: 141 GSYNNHI---------GVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ + P ++ D+ + E+ S ++ + Sbjct: 139 GTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEV--SSHAVDQYRVYGTVF 196 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243 H + T + HL +E K F+ ++ T + + + Sbjct: 197 HGGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKS 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S+G+ KNA F++ + + + G V G N+ + Sbjct: 257 CMNTISYGRDKNAQFRVSDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFNIYNIAAAFSYL 316 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 D+D A P GR + N + A +L + Sbjct: 317 LRSGFDIDFLHHATEKLKPIRGRFETVEK---------DFLVVNDYAHTPDAIEKILMSL 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 + + R I V G G L ++ + L+ + + Sbjct: 368 NQIKKNRIIIVFGA----GGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRIIEDI 423 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 K + ++ + D+V++ K Sbjct: 424 KSGMKMEKEIYEIIDREEAIKKAIEIARKDDIVLIAGKG 462 >gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] Length = 490 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 85/489 (17%), Positives = 152/489 (31%), Gaps = 61/489 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I +DSR + F IKG DGHDF AV+ GA ++ + + Sbjct: 19 ENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPL-----DVD 73 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V D A+ LA A + + +I +TG+ GKTTT ++ + K I Sbjct: 74 VPVIVVRDSRRAMAVLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQIVRKANKKTGLI 133 Query: 141 GSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ + IG VD I E+ L R Sbjct: 134 GTVHIKIGDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGRVHGCDYD- 192 Query: 185 HIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV T + HL +EE A G + + + Sbjct: 193 -VAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQYYKHM 251 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T+ ++G ++D ++ ++ + V IG N+L + Sbjct: 252 TAATVITYGTKTDSDIMAKRIDIVPNGMAFDLITPHGTARVKTKLIGLFNVYNLLAAVSA 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + ++A+ GR + FT+I + Y P S++ + Q Sbjct: 312 CLVSGIPFPVIVEAIEEISGVAGR---FETVDEGQDFTVIVD-YAHTPDSLENVLKTAQQ 367 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + V+G G L +++ + + Sbjct: 368 FARKN---VYVVVG----CGGDRDRTKRPLMAKVAVQYADVAIFTSDNPRSEDPEQILRD 420 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K--------SSNSCGF-YRLI- 461 ++ +P +V + +GD+V++ K F RL+ Sbjct: 421 MEAGVPGERYVTIV-DRKEAIYYAIEQAQEGDIVLIAGKGHETYQIIGDRVIAFDDRLVA 479 Query: 462 -NLLLEEFP 469 + E Sbjct: 480 REAIKERKK 488 >gi|319791795|ref|YP_004153435.1| UDP-N-acetylmuramoyL-tripeptide--D-alanyL-D-alanine ligase [Variovorax paradoxus EPS] gi|315594258|gb|ADU35324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Variovorax paradoxus EPS] Length = 1592 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 108/477 (22%), Positives = 195/477 (40%), Gaps = 33/477 (6%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSR-----SIAPQ-EAFFA-----IKG-P 49 P+WT L Q G + P V + R + P F A + Sbjct: 1108 PVWTADQLAQITGGQWLVPPPAGWSVQSVV---RLPMHLKVRPGPALFVASDYRTLAAHE 1164 Query: 50 HY-------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 ++ D HD + + AG +V P+ V D + AL L AA Sbjct: 1165 NFSHAPEDWDQHDDLPRLHTQCAGAIV---QHAVEGLPPDFPLLQVPDPIRALLSLGAAA 1221 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R R K ++ +TG+VGK++T M+ L + + + N+ +GVP +A + DVD Sbjct: 1222 RARYKGLVVGVTGTVGKSSTIAMVRDLLPPGARVLTTVENNNSRVGVPGAMASLGPDVDV 1281 Query: 163 GIFELGMSHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 I E+ S L R RPH+A++T + + + + +E+ A K+ F GLE G Sbjct: 1282 CILEMAQSALWMDRGPISLEARPHVAILTEVGLSQTAKTNTLEKTAEYKSRAFLGLEPGG 1341 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 ++ + + +++ G + +L + S + + +G+ Sbjct: 1342 IAVVSGHIPHLAKVVKAAMRTAA-KVWTVGTGPGDNIRLLDARPESSGCRVRLSFKGRIH 1400 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFT 340 E + + +N + + + D + A + +V P + T Sbjct: 1401 EYLFPVASIGLVRNSALAFAAIVAMGFDAEEASARMPNVRLPASVMQVEPLRTRSGALVT 1460 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIA----VLGDMCEMGELSQSFHIDLAEVL 396 L+D+S+NA SM+ A+S + +A VLG + +GE +++ H LAE L Sbjct: 1461 LVDDSWNAEVMSMRNAMSFVRSYRAPSGNAPVARKVGVLGRIVNLGEQAEAMHRGLAEPL 1520 Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 I+H+ G + L++ +P S+ + + L L++ L DGD+++VK Sbjct: 1521 LASGIAHLVTHGDEMRWLREEVPTSLLGPHFDNAAELTLYLGEYLRDGDLLLVKGDR 1577 >gi|229083523|ref|ZP_04215861.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus Rock3-44] gi|228699777|gb|EEL52424.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus Rock3-44] Length = 335 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 11/343 (3%) Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 +T L++ K G++NNHIG+PLT+ + + + + E+GMS LGEI FL+ L RP+ Sbjct: 1 MTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSLGEIEFLSKLARPN 60 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+IT I AHL + + IA AK EI GL+ G N D+ + Sbjct: 61 AAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQNGGVFVYNGDEPLLTNRVPNMNLAAET 120 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +FG ++ D+ + ++ ++ ++ +G H N L ++ I Sbjct: 121 I--TFGDARANDYYPTSVTLQATGTYFKMNQDKDTVFY-LPVLGKHNVYNTLASMAIAKY 177 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + L + G R T+I+++YNA+P +M+AA +++ + Sbjct: 178 FGVTWEEMKQGL---VTLQMTGMRMEIVKTNNGLTVINDAYNASPTAMEAAFHLMNGLDG 234 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422 + + VLGDM E+G+ FH ++ +++ IS+V+ G + + Sbjct: 235 FAKK--VVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPKE 292 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 V + + L +Q+ + + DVV+VK+S +I +L Sbjct: 293 RVKVYDNKEELVKELQTVIDEKDVVLVKASRGMKLEEIITMLK 335 >gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] Length = 490 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 90/462 (19%), Positives = 162/462 (35%), Gaps = 46/462 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + I +DSR + F +KG DGHDF AV+ GA +V ++ Sbjct: 16 VNDFHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAEREL---- 71 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +S+PV V + AL+ L+ A + + +I ITG+ GKT+T M+ L K Sbjct: 72 -DVSVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGKR 130 Query: 137 YACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTH 180 IG+ I + T +M + D I E+ L R Sbjct: 131 TGLIGTMYIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRVHGC 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 IAV T + HL ++E A + G + + A Sbjct: 191 DYD--IAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAY 248 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++G +AD + K ++ + E+ + + +G N+L Sbjct: 249 YEKVTAAHISTYGIKNDADVMAKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNVLA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + +T +A+ H GR + Y P S++ + Sbjct: 309 AVATCIAAGIPFETVAEAVEELHGVRGRFELVNKNQEFPVIVD----YAHTPDSLENVLK 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414 + EG+ V+G G+ ++ +A++ ++ S LA+ Sbjct: 365 TCKDM---TEGKVFVVVG---CGGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSEDPLAI 418 Query: 415 ---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + + H + F ++ GDVV++ K Sbjct: 419 LRDMEAGVENEYYHSIANREQAIFFAIANARKGDVVLIAGKG 460 >gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 489 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 87/476 (18%), Positives = 158/476 (33%), Gaps = 42/476 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + QG++ G++IDSR + P + + AI+G DGH FI AV +GA VV D Sbjct: 7 ELERLRAQGWIRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASL 66 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 +P V A + L+ T++ +TG+ GKTT+ LT L Sbjct: 67 VDVPPDVPYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAG 126 Query: 135 KTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFELGM--SHLGEIRFLTH 180 + S N G+ P + VD G + S G ++ T Sbjct: 127 MRVGMLSSVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTS 186 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239 V +A+ T + HL +E A+AKA +F G + LN DD + +++ Sbjct: 187 DVDFDLAIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENC 246 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + G + + W+ ++ M + Sbjct: 247 VAPIVTYGVRSGDVRGRVVETDGWR------TRVSIRLPNGEKLEGVLHHPGMYNLYNLL 300 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + V A + G+ + G ++D ++ + + Sbjct: 301 AVVAAAYVLGVSADDIAGVIPTLPTIPGRMHVIRPEHGPTVIVDYAHTPDA-----LRQI 355 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415 LS GR V G GE + ++ + + + + + Sbjct: 356 LSTARQWTSGRVWLVFGG---RGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIA 412 Query: 416 -DALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + L + VH + D DV+++ ++++ L Sbjct: 413 NEILAGAQRVHRARCDVVLDRAQAIERAVIEANDEDVILITG-RGHESFQVVGGLR 467 >gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] Length = 500 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 85/484 (17%), Positives = 161/484 (33%), Gaps = 52/484 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++ I ++ ++ I+ DSR I P + F A+KG DGHDFI AV+KGA Sbjct: 3 LRELIENINIKTLSGGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAV 62 Query: 67 LVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 V+ A L+ + V+D AL++LA +I ITG+ G Sbjct: 63 AVLSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYGHPFRTMNLIGITGTNG 122 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDF 162 KTTT +L L++ + IG+ N IG Sbjct: 123 KTTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILREMADQSATD 182 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTG 221 I E+ L + R R +A+ T I+ HL +++ AK+ +FEG + Sbjct: 183 VIMEVSSHALDQGRVADCPFR--VALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGN 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKS 280 + + AL ++G + D + + + + + Sbjct: 241 QGAACAVINTDDPWGKHLMALTPARTVTYGLGNSCDVTAKDVSVSRKGLHARLIFEKREE 300 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +++ IG N++ + D + + GR + + Sbjct: 301 IDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELVPNDRSLAIIV 360 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + +A L+ GR + V G G ++ N Sbjct: 361 DYAHTPDA-------LEKALAATKQITSGRILTVFG----CGGDRDKGKRYEMGRIAGAN 409 Query: 401 ISHVWLS-----GFHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++++ ++ D + + + + + + D+V++ Sbjct: 410 SHRIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLI 469 Query: 450 --KS 451 K Sbjct: 470 AGKG 473 >gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] Length = 493 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 79/452 (17%), Positives = 151/452 (33%), Gaps = 46/452 (10%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88 DSR+ P F A+KG DG +I A++KGA V+ D + +PV Sbjct: 25 DSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWHQDVPVIQF 84 Query: 89 DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + L+++A K T+I +TG+ GKTT ++L + T A +G+ N Sbjct: 85 YQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSAVMGTIGN- 143 Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ + + + +S G ++ + +A+ T Sbjct: 144 -GLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDFDVAIFT 202 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E A+AK +F L+ I D E L A+ + F Sbjct: 203 NLSRDHLDYHLTMENYAAAKKRLFTELKPKHQIINADDPVGVEWLAELGSAVAVSCREDF 262 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 ++ + K ++ + ++ + + E+ IG N+L+ + L D Sbjct: 263 HPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFATLLSLDYDF 322 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D ++ S GR + + + +A L H +G+ Sbjct: 323 DELLRTASSLTGVCGRMEMLTQSNQPTAIVDYAHTPDA-------LEKALQAARLHCQGQ 375 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421 V G G + L ++ V ++ + + + Sbjct: 376 LWCVFG----CGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDILLGFEDQ 431 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + F D +++ K Sbjct: 432 SAVKILHDREQAIAFAIEQADPEDTILIAGKG 463 >gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] Length = 523 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 83/464 (17%), Positives = 152/464 (32%), Gaps = 44/464 (9%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + P ++ ++IDSR + P FFA+ G DG+ F+ A+ +GA V+ + Sbjct: 42 KLLKGQPDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVDEAISRGAVAVISSQARR- 100 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 S + VD+ L ++ A +++ ITG+ GKTT ++ L+++ Sbjct: 101 -FRSAKVAYLTVDNPRLVLAAVSRAFYDHPDKDLSLVGITGTNGKTTVAYLVKQILANLG 159 Query: 135 KTYAC---IGSYNNHIGVPLTL-------------ARMPVDVDFGIFELGMSHLGEIRFL 178 + Y C +G VP + + E+ S G +F Sbjct: 160 QRYGCLGTVGYDLVRRTVPSFRTTPESHDLCGLLSQMRDFECRGAVMEV--SSHGIDQFR 217 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + + HL +E + K F G + + Sbjct: 218 VSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGESGPLPKVAVVNIDDPYGKRLV 277 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 S I +FG+++ A F+ + + SE S V +G + N L Sbjct: 278 SEIPEQVAILTFGETEGAAFRASEIELSSEGSEFRFTTPLGDFAVKTSLVGDYNVSNTLA 337 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L I S L +++ I+ L F GR + T++ + + A + Sbjct: 338 ALTICSGLGLNIENCIEDLDSFPGIPGR---MQKVEAGQAATVLVDYAHTEDA----LQN 390 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SGF 409 LS + G+ V G G ++ W Sbjct: 391 ALSMLQGVTVGKLRVVFG----CGGNRDRGKRPAMTKVANTLADEAWATSDNPRNEQVED 446 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K+ L VH+ + GD +++ K Sbjct: 447 IFADMKEGLVDPERVHFVPDRRRAIELALEASHAGDCLLIAGKG 490 >gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] Length = 478 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 79/507 (15%), Positives = 158/507 (31%), Gaps = 73/507 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L I + ++ DSR I F AI G +DGH FI A+ G Sbjct: 1 MNLTDILDKIDYIDYTKNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 +VV D+ + I V D AL +++ K +I +TG+ GKTTT Sbjct: 61 TNTIVVTEDVSQ---NEGINYIKVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLARMP-----------VDVDFGIFE 166 M++ L + IG+ P T + +D + E Sbjct: 118 ASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVE 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S G + +AV ++ H+ +E AK +FE Sbjct: 178 C--SSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN--------AK 227 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + Y+F +DF+ + + + + K+++ V + Sbjct: 228 KKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELIDGK----MHFEIKNVKFVLN 283 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 N + + V++L ++ K+L F E R + + + + Sbjct: 284 RFALFDVYNAVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVKNDMGINIVIDFAHT- 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + +R + M G+ ++ ++ ++ + N+ V Sbjct: 343 ---------PKAFENIYKSVPNDKRKIAVYGMS--GDRTREIRHEVGKISAENNVFSVVT 391 Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS-NS 454 + + + + + DGD V++ K N Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENF 451 Query: 455 CGF--------------YRLINLLLEE 467 +++ L + Sbjct: 452 IKLKGNEKTPYSEKETVNEVLDELKNK 478 >gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] Length = 484 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 93/476 (19%), Positives = 156/476 (32%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++++ I + GI +DSR + F A+KG DGH +I A++KG Sbjct: 1 MKLENIIESVNVCEIKGNVDKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A +V T + + + V D A+ KLA SK ++ +TG+ GKTT Sbjct: 61 ASAIVCET--LPDTLNEHVTYIRVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELG 168 +L ++ P+TL R+ D + Sbjct: 119 ATLLYNMFRKFGYKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T I HL E AK F+ L KT N D Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKTAFALTNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A I ++ +F+ + + E + + + EV I Sbjct: 239 DKNGSVMVQNTKA----KIATYSLRTLCEFKGKVLEDGFEG----MLMDINNREVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + LS P GR R + +A Sbjct: 291 GRFNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALRSKKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL G GR I V+G G + + V ++ Sbjct: 351 LVNVLNAIHEVL-----KGRGRVITVVGA----GGNRDKGKRPIMAQEAAKQSDRVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKG 457 >gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] Length = 492 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 142/478 (29%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L+ I+ P V + +DSR + P + F AIKG DG FI A++ Sbjct: 1 MRDLKAILKYIEI----DAPSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIEN 56 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA ++ + P++ V ++ L +LA + +I +TG+ GK+T Sbjct: 57 GAVAIIADRLCEFETSFE--PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKST 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T M+ + G P L + + Sbjct: 115 TTAMIAHL--AQFCNSQSAIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLV 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + AK +F+ E + Sbjct: 173 AMEVSSHGLVQQRVAQCQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPELVVLN 232 Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D + L+ S + + ++ ++ + + Sbjct: 233 QDDGQTDQWLEKYSFNSLVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIK 292 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N+ L + L + I + P GR + + Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGKPTCIVDYAH 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L + H G V G G L + N V Sbjct: 353 TP-------EALALALQALQQHVPGGVSCVFG----CGGDRDKGKRALMAQAAEQNADKV 401 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + + + S+ +V+++ K Sbjct: 402 IITSDNPRSENPDAIIADVAQGLAQPTKAYLEADRATAISYAISNAKADEVILIAGKG 459 >gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans] Length = 371 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 161/375 (42%), Gaps = 16/375 (4%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVP 150 AL ++A R + +I +TGS GKTT KEM+ L + G++NN IGVP Sbjct: 2 ALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVP 61 Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 LTL R+ + ELGM+H GEI L+ + +P + ++ H +E +A Sbjct: 62 LTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQEN 121 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 + L G DD+F L ++ + +FG S +AD + + Sbjct: 122 GAVLASLPADGVAVFPADDAFTPLWRSYAAQRKTL---TFGFSADADVRCTYAANVF-GN 177 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 M V + + G H +N L + + + ++ L F P GR Sbjct: 178 DMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRL--- 234 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 + L +ID++YNANP S++AAI VL+Q++ RI VLGDM E+G + +H Sbjct: 235 QRKLAASGALVIDDTYNANPDSVRAAIDVLAQMAS----PRILVLGDMGEVGNDGRQYHE 290 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 ++ I HV G A + ++++ L + + V+VK Sbjct: 291 EIGAYARANGIEHVLALGELARHTVSAFGAG--AQHYDSVEALNDALAAIFAADATVLVK 348 Query: 451 SSNSCGFYRLINLLL 465 S R++ LL Sbjct: 349 GSRFMKMERVVQHLL 363 >gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] Length = 486 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 155/473 (32%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ I I + + IDSR + + A++G DGH FI A++KGA Sbjct: 3 ITELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 VV + + ++ V D AL LA K +I +TG+ GKT+ Sbjct: 63 AVVCEE--LPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKTSVST 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFE---LGMS 170 +L ++ A + + IG +T+ R+ + E + +S Sbjct: 121 LLFDVFKNLGYPAALLSTVEIRIGEEIIPATHTTPDVITINRILAEAVEKGCEFAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + + IA T + HL EE K F+ LE T N DD Sbjct: 181 SHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDELEDTAIAITNVDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A S+ AD+ + + + + + G Sbjct: 241 NGNVMLQNTKAKKK----SYALKTMADYHGKLLEVDFNGMLLNFNGKEFWTTLT----GK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L+ GI + L + D ++A+S GR + ++ F Y P Sbjct: 293 FNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETFKSDGGIFFIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 +++ + ++ I E G+ S ++ + + + + S Sbjct: 349 DALENILDSINDIRTKNERLITV----FGCGGDRDHSKRPEMGNIATKKSTLAIITSDNP 404 Query: 409 --FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + D+V+V K Sbjct: 405 RTEDPTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKG 457 >gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 500 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] Length = 487 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 154/476 (32%), Gaps = 46/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + ++ V + DSR + + F AIKG DGH +I A++ Sbjct: 1 MKTLKDILYKVHIEAVTGDTTIAVRELVFDSRKVQLNDVFIAIKGYEVDGHSYIEKAIKA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+ + I VD+ AL +A +I +TG+ GKTT Sbjct: 61 GAIAVICEE--IPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKLIGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFG-IFEL 167 +L ++ + + ++ + + Sbjct: 119 IATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQKMNHEGVEYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + + T ++ HL E K + F+ L K +N Sbjct: 179 EVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKEAFCLVNI 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A Y++ AD++ + + +++ +++ Sbjct: 239 DDKNGLVMMQNTKAKK----YTYALKTYADYRAQILENRLAGLLLKINDNEVWTKLIGSF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 Y++ + I+ L + E R+ +++ T I + Y Sbjct: 295 NAYNLLSIYATAELLGLE-------EIEILRLISELESVSGRFEYFISKNKITTIVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ I E V G+ + + + S + ++ S Sbjct: 347 HTPDALKNVLETINNIRTGNEQLITVV----GCGGDRDTTKRPKMGNIASTLSTKAIFTS 402 Query: 408 G----FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +A+ + + D++++ K Sbjct: 403 DNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILIAGKG 458 >gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] Length = 488 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 72/473 (15%), Positives = 152/473 (32%), Gaps = 45/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + ++ +N I DSR + + F AI+G DGHD+I +A +GA Sbjct: 4 LKDILYKVNMKAVTGDTGVTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGAL 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V I + V+D AL ++ K ++ +TG+ GKTT Sbjct: 64 AIVCEKIPDEVIN--GVTYIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIAT 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMS 170 +L + + + +G + + DV + +S Sbjct: 122 LLYDLFTKAGFKCGLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T ++ + T ++ HL E K F+ L + N DD Sbjct: 182 SHGIDQHRTTALKFEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDELPASAFALTNVDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 E++ + A +++ AD++ + + ++V Q +++ Sbjct: 242 NGEIMLQNTKAKK----HTYALKSFADYKAQILENNFTGLLLKVDDQELWTKLI------ 291 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L I ++ ++ L + R++ +++ Y P Sbjct: 292 -GNFNAYNVLAIYAMADLLGLKTLEILRIISELNSVSGRFQYVISEKEKITAIVDYAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++K + ++ I E V G+ + + + S + V+ S Sbjct: 351 DALKNVLETINSIRTRNEELITVV----GCGGDRDTTKRPKMGHIASALSTKVVFTSDNP 406 Query: 409 --FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + D++++ K Sbjct: 407 RTEDPDKIIEEVEGGVEPQNFKKTMSVTNRKQAIKTACQMAGQNDIILIAGKG 459 >gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 474 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 188/460 (40%), Gaps = 30/460 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + +Q I G + + G ++ R +A + +F K +D ++ Sbjct: 29 TLNQCIQIIGGTLMRGDGSRILRGANLGKPRRLAKNQIYFYSKSRSWD---------KQL 79 Query: 65 A-------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 A V+ + S S+ + V DV A+ +LA + + + A+TGS Sbjct: 80 AGLQSTPPAAAVLPEGISWSSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSA 139 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GK+TT M+T L ++ G+ N +P L R+ +F + E+GM I Sbjct: 140 GKSTTTSMVTSILKRSRRVVHTQGNLNTFTYLPSYLLRLSPGDEFLMLEMGMKSFNNIAR 199 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +VRP + +T + AH G+ + AK E+ +GL T++LN D + L Sbjct: 200 QCRVVRPEVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRPGATLYLNADCLRSKQLST 259 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + Y+FG AD Q + + +V +GK G H N L Sbjct: 260 RRFRGSV---YTFGIRNPADIQGSNIQYSTNGVSFDVMTEGKRGRFFIPTWGDHNVLNAL 316 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 +GI L L+ + R + TLI++++NANP++MKA + Sbjct: 317 AAIGIARALGIGFHQIRDGLAK---VKLPRMRLQRIRGSHGRTLINDAWNANPSAMKAGL 373 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL--- 414 SVL +S G IAVLGDM E+G +++ H ++ + N+ + G + Sbjct: 374 SVLRYLSSKRPG--IAVLGDMMELGGYTRAGHREVGRFAARMNLHQLITYGQKAREIGRT 431 Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 A V + L + S+ G V+ K+S Sbjct: 432 ALAAGMDPHRVRHFSNRGALLRHLLST-PAGSVIYFKASR 470 >gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] Length = 484 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 149/476 (31%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I +I + G++IDSR I F A+KG DGH FI AV++G Sbjct: 1 MKLSELLRNISPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V++ + ++ V K+A K ++ +TG+ GKTT Sbjct: 61 AAAVLLE--NLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y N VP + Sbjct: 119 ATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+GL K N D Sbjct: 179 CSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ + ADF+ + + E + L+ EV I Sbjct: 239 DKNGMFMVQNTKASVK----TYSIKRMADFRAKILECHFEG----MYLEIDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + A+S GR + + Y Sbjct: 291 GKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ ++ + + G I V G G L ++ V L+ Sbjct: 347 TPDALANVLAAIHDVLDSKGGHVITVCGA----GGHRDKGKRPLMAQEAVRQSDTVILTS 402 Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + V GDV++V K Sbjct: 403 DNPRDEDPQAIIDDMLAGLDFTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 458 >gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] Length = 485 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 156/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ ++ + + G++IDSR I F A+KG DGH FI A++ G Sbjct: 1 MKLSELLKNVKVIASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +++ + + + V K+A K ++ +TG+ GKTT Sbjct: 61 AVAILLED--MPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y N VP + V+ + Sbjct: 119 ATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+GL KT N D Sbjct: 179 CSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ + ADF+ + + E + L+ EV I Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIKRMADFRAKILECHFEG----MYLEVDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + A+S GR + + Y Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPEGYTAVVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P +++ +S + + G I V G G L ++ V L+ Sbjct: 347 TPDALENVLSAIHDVLDGKGGHVITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 402 Query: 408 ----GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + V GDV++V K Sbjct: 403 DNPRDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKG 458 >gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] Length = 486 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 78/460 (16%), Positives = 144/460 (31%), Gaps = 36/460 (7%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G + GI+ DSR + P + F A+ G DG +I A+ +GA VV Sbjct: 14 LSAQLKGDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVA--- 70 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + PVF + D L K A + R T++A+TG+ GKT+ + Sbjct: 71 GTGTPAEAGAPVFAISDPRRFLAKAASSFYGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130 Query: 134 KKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLT 179 + A I + P++L ++ + D G+ + S G + Sbjct: 131 GFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQRRL 190 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V A T + H+ +E ++K +F L G+ + + D + + Sbjct: 191 DGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAIAA 250 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G++ + R +QS V + Sbjct: 251 ARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDIYEIHV----PLAGDFQIANA 306 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + TA A S +G R L Y P ++ + Sbjct: 307 LVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAYVDYAHKPDALANVLES 366 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413 + P GR + V G G + ++ V ++ + + Sbjct: 367 ---VRPFTTGRVVVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDNPRSEVPEVI 419 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 420 RAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKG 459 >gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas gadei ATCC BAA-286] Length = 483 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 97/476 (20%), Positives = 164/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ I I + GI DSR AF A+KG DGH +I +A+ G Sbjct: 1 MKLKDLLKGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQYINNALDLG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A +V+ + S I V D A K+A +K ++ +TG+ GKTTT Sbjct: 61 AKVVIHQEKVDTSRE--GITYIKVKDSADAAGKIATLWYGDPSAKLKLVGVTGTNGKTTT 118 Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168 +L + + PL+L M + E + Sbjct: 119 ATLLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAKMVDAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T I HL + E AK F+ L +T N D Sbjct: 179 VSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDNLPETAFALTNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A Y++ ADF+ + ++ + + +E + E+ + Sbjct: 239 DKNGAVMLQNTKAKK----YTYSVKTLADFKAKIIEKHFDGTAVEFNNK----ELQVQFV 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L D D A+ LS P GR + R N Y Sbjct: 291 GVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPENYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ + + ++ G GR I V+G G + ++ V L+ Sbjct: 347 TPDALTNVLEAIHEV-LEGNGRVITVVG----CGGNRDKTKRPIMAREAVRLSDQVILTS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + + +GDV+++ K Sbjct: 402 DNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAGKG 457 >gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 493 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 85/483 (17%), Positives = 159/483 (32%), Gaps = 54/483 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAV 61 +L + + G+ +DSR I F + G + D H F+ AV Sbjct: 1 MKLKELTSLLLIKDTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAV 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A K +I ITG+ GK Sbjct: 61 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L LS +G+ +G +VD+ Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYC 175 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL +E K G + + Sbjct: 176 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLST 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 T + + + + ++G AD Q + + V + Sbjct: 234 TDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEI 293 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV + +G N L + + + + +LS EGR + + Sbjct: 294 EVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIEGRMEIIDENQDFLVIVD 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 354 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 402 Query: 402 SHVWLSGFHV---------LALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449 V+++ + ++ ++ +++Y E + + D+V++ Sbjct: 403 DFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 462 Query: 450 -KS 451 K Sbjct: 463 GKG 465 >gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485] gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485] Length = 811 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 97/466 (20%), Positives = 165/466 (35%), Gaps = 51/466 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +LL A G +G S DSR AP E F AI+ DGHD+I A+ GA Sbjct: 4 TLAELLDA-GGTLVGPSVTDTFTDWSYDSRLTAPGECFIAIRTARADGHDYIPAALAAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ + + V D L + A T++A+TG +GKT + Sbjct: 63 RGVLCRRP---PHAADNATVIVCSDPQTVLLRWASNRLRALHPTVVAVTGGIGKTLARRA 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + L+ + T+ ++N+ +G+P+ LAR+ + + E HL L PH Sbjct: 120 IAAVLTQLAPTFQSRRNFNSLLGLPIALARLRAHDRYAVLEFAGEHLSP---LVAAFPPH 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AVIT A + A + G Sbjct: 177 LAVITPGADPQTVTLLQQHGVRVLSAAAADCYTIAGEFA--------------------- 215 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + + G + + +G L + + Sbjct: 216 ------------IRATDISFRRDGVTFIARGPGLELPIFTPLLGPPGVSAALAAIAVGLS 263 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + +AL+ P GR + R + +ID+S+NA +M AA+ L+ + Sbjct: 264 YHMSPEPIQQALTRLEPPAGRLRPLRGKNGEM---IIDDSFNATLPAMVAALQTLAALPA 320 Query: 366 HGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421 RIAVLG E+ + + DL + ++ L G + A + Sbjct: 321 QR---RIAVLGTPAELPAIDPTPMLSDLGGQAARS-ADYLVLKGTGAATMVHAARLVKPT 376 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 I +H +T + + S GD+V+V +++ LL + Sbjct: 377 IPIHVVDTNTAAQMSLPSDRGAGDLVLVSGGAGERLEQVVAPLLAD 422 >gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] Length = 482 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 93/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K+ N DD Sbjct: 181 SHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R L Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPLGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] Length = 484 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 88/476 (18%), Positives = 149/476 (31%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ + +I + G++IDSR I F A+KG DGH FI AV++G Sbjct: 1 MKLSELLKNVSPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V++ + ++ V K+A K ++ +TG+ GKTT Sbjct: 61 AAAVLLE--NLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y N VP + Sbjct: 119 ATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+GL K N D Sbjct: 179 CSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ + ADF+ + + E + L+ EV I Sbjct: 239 DKNGMFMVQNTKASVK----TYSIKRMADFRAKILECHFEG----MYLEIDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + A+S GR + + Y Sbjct: 291 GKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ ++ + + G I V G G L ++ V L+ Sbjct: 347 TPDALANVLAAIHDVLDSKGGHVITVCGA----GGHRDKGKRPLMAQEAVRQSDTVILTS 402 Query: 408 ----GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + V GDV++V K Sbjct: 403 DNPRDEDPQAIIDDMLAGLDSTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 458 >gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 500 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] Length = 492 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 158/485 (32%), Gaps = 58/485 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I F + G DG H F+ Sbjct: 1 MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161 GKTTT +L LS +G+ +G + D Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219 + + E+ L R + IAV T + HL +E K+ G Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNL 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + + + + + ++G AD Q + + V Sbjct: 232 STIDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +EV + +G N L + + + + +LS EGR + + Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A +VLS I +G+ I V G G + + ++ Sbjct: 352 VDYAHTPDA-------LENVLSTIREFAKGKIITVFG----CGGDRDAKKRSIMGGIAGS 400 Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVV 448 V+++ + + ++ ++ +++Y E + + D+V+ Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 460 Query: 449 V--KS 451 + K Sbjct: 461 IAGKG 465 >gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] Length = 491 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 79/460 (17%), Positives = 160/460 (34%), Gaps = 42/460 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 P + + +DSR + P FF IKG +DGH ++ A++ GA VV + D+ Sbjct: 6 LFDNAPDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDI--K 63 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKK 135 + ++ V DV ALN++A ++ +TG+ GK++ M+ L+ + Sbjct: 64 RNNANVVYIKVRDVTAALNQVAACFYGYPSKKMVVYGVTGTNGKSSIACMIRNLLNPVYA 123 Query: 136 TYACIGSYNNHIG--------VPLTLARMPVDVDFGIFELGM-----SHLGEIRFLTHLV 182 + P + + D + S +G + T V Sbjct: 124 CGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMAQAGMKACALEISSIGLEQHRTDSV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IA+ T + HL +E AK +F+ L+ GT N DD + A A Sbjct: 184 DVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKPDGTAITNKDDPHGMAIVADCPA- 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + ++G + AD++ + + ++++ + G V + + N+L + Sbjct: 243 ---RVVTYGVLEKADYEAKDIQLNADKTIFTLVHDGSEYPVQTNLVAMFNLYNLLAVIAA 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + ++ ++ L+ EGR +R + P ++ S Sbjct: 300 LHEGGLPIEQILEQLNTIPQIEGRMERIEEGQPFNIIVD----FAHTPDGLEQIFKFASA 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413 I+P + V G + + L+ + L+ Sbjct: 356 ITPKEKRIIS-VFGSAG----KRDTKKRPVFGQLADKYCDLIILTEDDPRDEDPIQIAEE 410 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + E+ GD +++ K Sbjct: 411 IAAGIQKTNRIII-ESRYDAIRQAVEVANVGDTILILGKG 449 >gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 500 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] Length = 485 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 156/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ ++ + + G++IDSR I F A+KG DGH FI A++ G Sbjct: 1 MKLSELLKNVKVIASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +++ + + + V K+A K ++ +TG+ GKTT Sbjct: 61 AVAILLED--MPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y N VP + V+ + Sbjct: 119 ATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+GL KT N D Sbjct: 179 CSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ + ADF+ + + E + L+ EV I Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIKRMADFRAKILECHFEG----MYLEVDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + A+S GR + + Y Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPEGYTAVVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P +++ +S + + G I V G G L ++ V L+ Sbjct: 347 TPDALENVLSAIHDVLDGKGGHVITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 402 Query: 408 ----GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + V GDV++V K Sbjct: 403 DNPRDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKG 458 >gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas mossii DSM 22836] Length = 483 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 162/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ I I V G+ DSR P F A+KG DGH +I +A++ G Sbjct: 1 MKLQDLLKNIDVIEIKGEQDINVTGVFTDSRKATPGSVFIALKGVQVDGHLYIKNALELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A +++ + + I V D A K+A + ++ +TG+ GKTTT Sbjct: 61 AKVIL--HENKIDTSNEGITYIKVKDSADAAGKIATHWYGDPSNNLKLVGVTGTNGKTTT 118 Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168 +L + + P++L M ++ E + Sbjct: 119 ATLLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKNMVDAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL + E AK F+ L T N D Sbjct: 179 VSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKKAFFDQLPDTAFALTNID 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++ ADF+ R ++ + + +E+ + E+ + Sbjct: 239 DKNGLVMLQNTKA----KTSTYSVHSLADFKARIIEKHFDGTAIEINGK----ELQVQFV 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + A+ LS P GR + R + Y Sbjct: 291 GVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSSQGFTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ + + ++ G GR I V+G G + ++ V L+ Sbjct: 347 TPDALTNVLEAIHEV-LEGNGRVITVVG----CGGNRDKTKRPIMAREAVRLSDQVILTS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + + GDV+++ K Sbjct: 402 DNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIAGKG 457 >gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 500 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 82/462 (17%), Positives = 152/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + V++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] Length = 485 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 95/467 (20%), Positives = 156/467 (33%), Gaps = 37/467 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T DLL G V G+++DSR + P + F A+ G DG FI A++KGA Sbjct: 4 TLADLLPETLSAPQGADG-VEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 ++ + A +PV +D AL+ +A R ATI AITG+ GK++T E Sbjct: 63 VCILAPKGVTAP-----VPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEF 117 Query: 126 LTIALSSIKKT-------YACIGSYNNHIGVPLTLARMPVDVDFGIFE-------LGMSH 171 L + S +G A + E + S Sbjct: 118 LRQIWAKAGIEAAALGTLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASS 177 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 G + VR + T + HL E+ S+K +F L G + DS Sbjct: 178 HGLKQRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMDSD 237 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + A++ + G + D + + + +G+ EV IG Sbjct: 238 WSQRVAQAAQSAGLSPVEIG-WRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLIGEF 296 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 A N L + D A +A+ GR + + L Y P Sbjct: 297 QAANALGAAAMAIASGVSPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLD---YAHTPD 353 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 + + PH +GR I V G G+ + + E+ + + + Sbjct: 354 GLDKLLRAA---RPHTQGRIILVFGA---GGDRDPTKRAPMGEIAARLSDVAIVTDDNPR 407 Query: 409 -FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + L GDV++V K Sbjct: 408 SEDPAGIRKTILAACPGAQEIGDREAAIRAGIEMLKAGDVLLVAGKG 454 >gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae L20] gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 500 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 501 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 80/462 (17%), Positives = 150/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR ++ + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT ++L Sbjct: 85 DRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L + D+ E L + Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQVLNADDEVGREWLAKLPN 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF ++ + + + + + IG N+L L Sbjct: 263 AVAVSTDASFSSDHKF-VKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 ASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + + DV+++ K Sbjct: 435 ADILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 492 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 166/481 (34%), Gaps = 50/481 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M + +L++ ++ I + ++ D+R + P F I G ++GH+ Sbjct: 1 MKAI----ELIKPLKSKKFSIDFSDSLEITKVTQDTREVEPGSLFVCIIGSLHNGHELAK 56 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGS 116 AVQKGA LVV + + + +PV V++ + A+ LA A +I +TG+ Sbjct: 57 EAVQKGAVLVVASEPL-----DVEVPVVYVNNTMKAMAILAAAFYDYPSQNLRVIGVTGT 111 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDF 162 GKTT +L K+ IG+ IG + R + Sbjct: 112 NGKTTVTHLLDYIFHDHKEKTGVIGTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENGV 171 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKT 220 + +S ++ IA+ T ++ HL +E+ A AK+ G Sbjct: 172 QTCSMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQ 231 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 +F + + +++S+G ++ADF+ + ++ + + + + Sbjct: 232 QDKPKFAILNFDDPVGRSFEEKTAASVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQV 291 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 EV +G N L + ++ + I++LS GR + + + Sbjct: 292 YEVQLQLVGKFNVSNALAAIAGAYAAGLELPSVIQSLSQISGVRGRFEIVKGEYDFAVIV 351 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + + ++VL+ ++ G V+G G + ++ N Sbjct: 352 DYAHTPDG-------LLNVLNAVNEIKTGNVFCVVG----CGGDRDRTKRPIMAEIAQKN 400 Query: 401 ISHVWLSGFHVL-----ALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V + + A+ + A D+V++ K Sbjct: 401 SDTVIFTSDNPRTEDPNAILNEVVAGLEEESYQLIPDRREAIQSAIKQAAPNDIVLIAGK 460 Query: 451 S 451 Sbjct: 461 G 461 >gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] Length = 485 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 160/476 (33%), Gaps = 56/476 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L +++ + + ++ I+ DSR + F AIKG DGHDFI A+ Sbjct: 7 LKNLSEIVD------VKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V+ ++ + V + AL++ + + + +I +TG+ GKTT Sbjct: 61 GAVVVIGEKEI---NLPEDVLYIKVKNSRKALSEASSLFFGKPAERLNVIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFE 166 T ++ L + +G+ I + + M + + Sbjct: 118 TTYLIKAILDEAGYSTGVVGTIGIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVT- 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S V+ + V T + HL E+ ++K ++ + Sbjct: 177 MEVSSHSLKLHRVDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKL-------FDLSRK 229 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + + ++ KNAD + S+ EV G+ ++ + Sbjct: 230 AVINVDDESGERLCSELNIPVITYAIEKNADVRAENVVIGSDGVSYEVCAGGERRKITYK 289 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + L D++T KAL GR + FT+I + Sbjct: 290 VPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGR---FEPVDEGQDFTVIVDYA 346 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL+ + GR I V G G L + + + Sbjct: 347 HTPDG----LENVLNTVKTFARGRIITVFGA----GGDRDRGKRPLMGKVVSERSDYFII 398 Query: 407 SG-----FHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + + + GDVV++ K Sbjct: 399 TSDNPRTEDPQAIIDDIEKGVTERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKG 454 >gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus maricopensis DSM 21211] gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus maricopensis DSM 21211] Length = 424 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 153/448 (34%), Gaps = 64/448 (14%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR P AF A+ G G+ F+ A+ GA V+ + D V Sbjct: 23 LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAP--------RAVRVP 74 Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D AL A A R + ++ ITGSVGKTT K AL + +N + Sbjct: 75 DAQVALFAWARAERAHNPL-VVGITGSVGKTTAKAYAAAALDAHFM-----PVFNTMPAI 128 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 L + E+G+ LGE+R L LVRP + V+T+I AHL F +E IA Sbjct: 129 ACFLIEFGRSARPLVVEMGIDRLGEMRELVDLVRPDVGVVTSIGEAHLEAFGTVETIARE 188 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K I E + + D + Sbjct: 189 KGVILEAPRGLVGVQASPFYP------------------------GRDTYGFGEATFAGD 224 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + H ++ + L + + Sbjct: 225 ALQVSAEAAAFVYGEVPVALPHASKVQAEAAVLGLALAEVAGVPV-GTAAERLAGVSVPG 283 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R + G FT+ID++YNA+P S+ GR ++VLG M E+G+ + H Sbjct: 284 GRYRVLPGRFTVIDDAYNASPLSV----RAALDALAALPGRHVSVLGRMLELGDTERELH 339 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + G L H T+ L + + + DGDVV+V Sbjct: 340 AQVGAYARQR-ADVTFGVGAFASEL------GERAH--ATVPDLLADLLAEVRDGDVVLV 390 Query: 450 KSSNSC------------GFYRLINLLL 465 K+S G +++ LL Sbjct: 391 KASRGISWAPQRRAQEGVGLDTVVDALL 418 >gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Bacteroides xylanisolvens XB1A] Length = 482 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 161/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K+ N DD Sbjct: 181 SHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 492 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 155/485 (31%), Gaps = 58/485 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I + F + G DG H F+ Sbjct: 1 MKLKELASLLLIKDTVGDMNVEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIVVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVD 161 GKTTT +L LS + N P + + + D Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219 + + E+ L R + IAV T + HL E K G + Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDL 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + T + + + + ++G AD Q + + V Sbjct: 232 STTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNITLSPKGIRFLVSSFNG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +EV + +G N L + + + + +LS EGR + + Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A +VLS IS G+ I V G G + + ++ Sbjct: 352 VDYAHTPDA-------LENVLSTISEFSTGKVITVFG----CGGDRDTKKRSIMGGIAGS 400 Query: 400 NISHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V+++ + + ++ +++ + + D+V+ Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAITHAINMASSNDIVL 460 Query: 449 V--KS 451 + K Sbjct: 461 IAGKG 465 >gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] Length = 482 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 90/474 (18%), Positives = 163/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + + G++IDSR + + F A++G DGH +I A+QKGA Sbjct: 3 LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A + ++ +TG+ GKTT Sbjct: 63 AILCEDIPEEPVA--GITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ + K N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVIESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 492 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 76/478 (15%), Positives = 145/478 (30%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L+ I+ P V + +DSR + P + F AIKG DG FI A++ Sbjct: 1 MRDLKDILKYIEI----DAPSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIEN 56 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA ++ + P++ V ++ L +LA + +I +TG+ GK+T Sbjct: 57 GAIAIIADRLCEFESSFE--PLYLVSELDKKLPELASRFYSQPSQTLDLIGVTGTNGKST 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T M+ + + G P L + + Sbjct: 115 TTAMIAHL--AQFCSTESAIIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLV 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + AK +F E + Sbjct: 173 AMEVSSHGLVQQRVAKCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFEPQVVVLN 232 Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D + L+ I + + SE ++ + + Sbjct: 233 QDDFQAEQWLEKYDFNNLICYGRKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIK 292 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N+ L + L ++ + + P GR + + A Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLVAGCAQLQPVAGRMQAFSQAGMPTCVVDYAH 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L + H G V G G L + N + + Sbjct: 353 TPDALAL-------ALQALQLHVPGGVSCVFG----CGGDRDKGKRALMAQAAEQNANKI 401 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + H F + DV+++ K Sbjct: 402 IITSDNPRSENPDDIIADVAGGLTHPQNAHLEADRATAIRFAIENATADDVILIAGKG 459 >gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 500 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 152/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L + Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPN 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|167629674|ref|YP_001680173.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] gi|167592414|gb|ABZ84162.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] Length = 599 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 101/469 (21%), Positives = 183/469 (39%), Gaps = 14/469 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62 W + G + P+ + + R + + + D + A + Sbjct: 6 WNVRAVAAITGGQLLSGRPEDPLRYVCE--RLVDCGKGDVLIPLV-NLTDPAGYAARAAR 62 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 KG G++V+ ++ + ++ V GV V A +L A R R KA I+A+TGS GKTTT Sbjct: 63 KGVGVLVLPDRTASAAANAAVAVIGVGSVRDAYFRLVKAYRHRCKARIVAVTGSAGKTTT 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KEM+ L+ + +YN G+ TL R+ FG+ ++G I F LV Sbjct: 123 KEMIAAVLAEAGEVQKNWRNYNGPYGIGYTLFRLRPHHTFGVVKIGAYIPNSIDFGARLV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 P + VIT I H + G E + K ++ L K G + LN DD + Sbjct: 183 APEVGVITCIGLGHAAALGGGEGVRREKEKLLTHLPKKGLLVLNGDDPGCRSVDLSRCQA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ + + ++ + + + + + + +EV G ++ L Sbjct: 243 PVRWVGVECEREDLSLWAERIQVHRDGTRFLLCGLEREIEVELPGF--FGRPAVIDALLA 300 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 ++ S E +R+ G LID +YNANP SM A++ ++ Sbjct: 301 AAVGDHMGLPPESIASGLTKVEYTPRRFSPIRLPGRRLLIDATYNANPHSMSASLESAAK 360 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 ++ G+G +A+LG M +GE + H + + + G + + Sbjct: 361 LAVEGKG--LALLGTMSNLGEEAPEQHRAIGRRAAELGF-ALIALGEQAETMASGATEAG 417 Query: 423 HVHYSETMD----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 + + L + V++VK+SNS + + +E Sbjct: 418 GRVIYASKQWEKGHVVALALKELPEEGVLLVKASNSVELEIVAEAIEKE 466 >gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] Length = 482 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 161/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K+ N DD Sbjct: 181 SHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] Length = 493 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 164/474 (34%), Gaps = 38/474 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ T +L G + + ++GIS+DSR++ P F A+ G G F+ A Sbjct: 1 MSGEKTLSEL-----GLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAA 55 Query: 61 VQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA V+ + + ++ + + D AL AT+IA+TG+ Sbjct: 56 LSQGAAAVLTDAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGT 115 Query: 117 VGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 GKT+ + + + P+TL + + E Sbjct: 116 NGKTSVATFVRRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVE 175 Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + S G + V+ A T + HL + EE +AKA +F + Sbjct: 176 HAAMEASSHGLDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGT 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + D + + + G S+ AD +L + + + + G ++ Sbjct: 236 AVVNIDDARGIDMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQL 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + IG QN L+ G+V A+ + +AL GR + + G +D Sbjct: 296 RLNLIGGFQGQNALLAAGLVIACGAEAEDVFRALPKLDTVRGR-MQLAATRDSGAAVYVD 354 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ + S + + PH GR +A++G G + L + + Sbjct: 355 FAHTPDAVST-----AIKALRPHVMGRLVAIIGA----GGDRDAGKRPLMGAAAAEHADV 405 Query: 404 VWLSG-----FHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V ++ A++ L + L L GD ++V Sbjct: 406 VIVTDDNPRSEDPAAIRLQVLGGAPEAIEVGDRAEAILRGVDMLQPGDALLVCG 459 >gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] Length = 488 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 97/476 (20%), Positives = 158/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LQAI + ++GI +DSR I + F A+KG DGH +I A++KG Sbjct: 1 MKLGNILQAITTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV T + S ++ V+D A+ +LA SK +I +TG+ GKTT Sbjct: 61 ATAVVCET--LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168 +L I + N P + D + Sbjct: 119 ATLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL E AK F+GL KT N D Sbjct: 179 VSSHAVAQKRIGGLKFAGGIFTNLTRDHLDYHKTFENYLKAKKAFFDGLLKTAFALTNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++ ADF+ + + E + L + EV I Sbjct: 239 DRNGLVMTQNTKAKVA----TYSLRSLADFKGKVLEDGFEG----MLLDINNREVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L +L + + LS P GR R + +A Sbjct: 291 GRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLRSTKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + VL +G G+ I V+G G + ++ V ++ Sbjct: 351 LTNVLNTIHEVL-----NGRGKVITVVGA----GGNRDKGKRPIMAQEAVRLSDRVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKG 457 >gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 78/460 (16%), Positives = 151/460 (32%), Gaps = 42/460 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P + I +DSR + P F AI+G DG FI AV +GA +V D Sbjct: 16 NAPALSLTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPP 75 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L+IP G+ D+ L++LA + K ++ ITG+ GK+TT ++ + + Sbjct: 76 LTIPCIGIRDLPARLSELAGYFYEQPANKLDLVGITGTNGKSTTALLVANWRTLLGGKAG 135 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLV 182 +G+ N G+ L + + +S G ++ + Sbjct: 136 VMGTIGN--GLFGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAAL 193 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 AV T ++ HL +E +AK E+ + +++ + D + L A A+ Sbjct: 194 PFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLKLVDEPCAVINADDQLGRQWLAAYPGAV 253 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + ++ + + +G N+L +G Sbjct: 254 AFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLAAMGA 313 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +L D + + P GR + + + +A L Sbjct: 314 MLVLGYDFNVLLATAPQLQPVTGRMECFGGGNAPLAVVDYAHTPDA-------LEKALQA 366 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413 + H EG+ ++G G + ++ + V L+ + + Sbjct: 367 LRVHCEGQLWCLVG----CGGDRDRGKRPMMAAMAEQHADRVILTDDNPRTEEPAQIMAD 422 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L V D+++V K Sbjct: 423 MVAGLRDPAAVQVEHDRVKAIALALGQASKQDIILVAGKG 462 >gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] Length = 484 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 98/476 (20%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++++A+ + + + GI IDSR + P F AIKG DGH +I A++ G Sbjct: 1 MKLEEIIKAVTVNELIGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYIQKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A +V + + + D GA+ KLA A SK +I +TG+ GKTT Sbjct: 61 ACGIVCEQ--LPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDLIGVTGTNGKTTI 118 Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELG 168 +L ++ P+TL R+ D + Sbjct: 119 ATLLYKMFRQFGYKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + +R + T I HL E AK F+ L K+ N D Sbjct: 179 VSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKSAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D +++ + A I ++ DF+ + + + + L + EV I Sbjct: 239 DKNGKVMVQNTKA----RIAAYSLRTLCDFKGKVLEDGFDG----MLLDINNREVNVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R + +A Sbjct: 291 GRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDALRSRRGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL G+GR I V+G G L ++ V ++ Sbjct: 351 LVNVLNAIHEVL-----RGQGRVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DVV++ K Sbjct: 402 DNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDVVLIAGKG 457 >gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] Length = 487 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 76/473 (16%), Positives = 159/473 (33%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + ++ VN I DSR + + F AIKG DGH++I A+ GA Sbjct: 4 LKDILFGVSITAVSGSTSVMVNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ T + + VD+ AL +A ++ +TG+ GKTT Sbjct: 64 TIICET--MPVTIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISS 121 Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L Y P ++ DV + +S Sbjct: 122 LLYQLFKKAGFKVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T + A+ T ++ HL E K +F+ L K + N DD Sbjct: 182 SHGIHQKRTEGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNLPKKAFVLTNVDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A Y++ AD++ + + +++ +++ Y Sbjct: 242 NGLVMLQNTKARK----YTYALKTYADYKAQILENQFNGQLLKIDGSEVWSKLIGDFNAY 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +M + ++ L + E R++ +++ T I + Y P Sbjct: 298 NMLAIYGTAQLLGLE-------KLEILRLLSELENVDGRFQYFISKERITAIVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++K + ++++ E V G+ +S + + S + + ++ S Sbjct: 350 DALKNVLDTINKLRTGNENVITVV----GCGGDRDRSKRPVMGHIASEMSTTTIFTSDNP 405 Query: 409 --FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + V E+ + D++++ K Sbjct: 406 RTENPDEILKEIEAGVEVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKG 458 >gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 488 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFRQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQIAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] Length = 485 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 162/476 (34%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I +I + + G++IDSR IA F A+KG DGH FI A+++G Sbjct: 1 MKLSELLKNITPIAIHGNAEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V++ + + + ++ V+ K+A K ++ +TG+ GKTT Sbjct: 61 AVAVLLED--MPNTLNDNVTYVQVESTENTAGKVATLFYGDPSHKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168 +L ++ P+ L ++ D+ E + Sbjct: 119 ATLLYNMFREFGYKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + A+ T + HL E +AK F+GL K N D Sbjct: 179 CSSHAIHQHRIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDGLSKHAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A TI ++ + ADF+ + + E + L+ EV I Sbjct: 239 DKNGMIMVQNTKA----TIKTYSTKRMADFRAKILECHFEG----MYLEIDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L D + ALS GR + + Y Sbjct: 291 GKFNVSNLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPIQSPEGFTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ ++ + + + G I V G G L ++ V L+ Sbjct: 347 TPDALENVLTAIHDVLDNKGGHIITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 402 Query: 409 FHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 403 DNPRDEDPQAIINDMMAGLDATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAGKG 458 >gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 500 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ + T SF + + + + + E+ IG N+L L Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + +L D+ I+ + GR + N L+ Y P ++ L Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411 H EG + G G + + ++ V + + + Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQTNEKDVILIAGKG 476 >gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] Length = 501 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 155/463 (33%), Gaps = 51/463 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------ 83 I++DSR + + F A+KG DG FI A+++GAGLV+ D + L Sbjct: 24 ITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAKYN 83 Query: 84 ------PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 84 LDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLL 141 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLT 179 G+ + I + +S G ++ Sbjct: 142 GGKSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYRA 201 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +AV T ++ HL +EE A AK +F L+ + D+ E L Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLP 261 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +A+ + T SF + + + + + E+ IG N+L T Sbjct: 262 NAVAVSTDASFSSDHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTT 320 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + +L D+ I+ + GR + N L+ Y P ++ Sbjct: 321 LASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKA 377 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410 L H EG + G G + + ++ V + + Sbjct: 378 LQAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKI 433 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V + + DV+++ K Sbjct: 434 MANILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476 >gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] Length = 483 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+AIQ I + + G++IDSR + F A++G DGH +I A++KGA Sbjct: 3 LSELLKAIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124 V+ V I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AVLCED--VPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + +Y + +P D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQMADSGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + +R + T + HL +E AK + F+ + K N DD Sbjct: 181 SHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ + + E + L + E+ H IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGKILESHFEG----MLLDFNNHELAVHFIGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS P GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVRSPKGITAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKG 457 >gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3] gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3] Length = 1056 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 116/468 (24%), Positives = 197/468 (42%), Gaps = 22/468 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFIL 58 W + A G + P G+ + ++ P + ++G + D + I Sbjct: 597 WNAAHIAAATGGTWVRQPPHGWTAKGLCTYAPAMQPADM-VVLRG-NEDATGVPVNALIN 654 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A G + +AS PV V D + A+ + AR R +++A+TGS G Sbjct: 655 RAKPAG---FMTTEPDLAS--GQQGPVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAG 709 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT ML ALS+ + N GV LA +P + + EL + G++ Sbjct: 710 KTTVVAMLAHALSAWGNVAKSNHNANLPAGVAWNLASIPWETPHVVLELAI---GKMAIS 766 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + RP +A+ T + PAHL S + +IA K+ IF G+E T LN D ++ + Sbjct: 767 ARMARPKVAIFTNVLPAHLGEKSTVTDIARTKSAIFLGMEPGDTAVLNRDMLEWDTVHDA 826 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + ++ + + LR + + +L Sbjct: 827 ASRRKLEIVTYGTSEECMCQLLRYDAASRHAHARIRNREVSFLIGAAGSHMALNGLAVLA 886 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + ++ +++ + RG+ L+ T+ID++YNANP SM + Sbjct: 887 AISVLGHPLEPAIAQLESFAALPG---RGEEIHLLLDGRRLTVIDDAYNANPGSM---RA 940 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L+++ H GRRIAVLG+M E+G ++H +LA + +I V+++G AL Sbjct: 941 ALARLGDHIGGRRIAVLGEMAELGPGRAAYHTELAAFIQDRSIDEVYVTGDLYSDFWKAL 1000 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S Y+E+ L ++ LVDGD V+ K S+S G + L+ L Sbjct: 1001 SPSSRGLYAESRQALKEILRERLVDGDTVLFKGSHSTGMHELVEWLKN 1048 >gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] Length = 490 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 152/479 (31%), Gaps = 51/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ ++ + ++GI DSR + F A++G DGHD+I A+ KGA Sbjct: 3 LKELIHPLEVLEVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGAA 62 Query: 67 LVVVNTDMVASIGSLSI-----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 +V S + + V D AL K A ++ +TG+ GK Sbjct: 63 AIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE-- 166 TT +L + + + N+I P+TL + + E Sbjct: 123 TTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAGCEYA 182 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + + + + T + HL +E AK + F+ L + Sbjct: 183 FMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPTSAFALT 242 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD ++ + A + ++ ADF+ + + E + M V + V Sbjct: 243 NADDKAGLVMLQNTAARKL----TYSLRTLADFKGKILESHFEGTEMLVNGREVMTRFVG 298 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 Y++ + + +V + L + + + + ++ Sbjct: 299 RFNAYNLLAVYGAAVSLGK-DPEEVLVVLSDLHSVSGRFQTIQSPKGYTAIVDYAHTPDA 357 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 S+ + +G GR I V+G G + + + Sbjct: 358 LTNVLNSIHEVL--------NGNGRVITVVG----CGGNRDKGKRPIMAKEAAKLSDQLI 405 Query: 406 LS---------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + + L + H GDV++V K Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAGKG 464 >gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] Length = 501 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 136/473 (28%), Gaps = 37/473 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + LL V G+S DSR I P + F AI G H DG FI A Sbjct: 8 MTSL-SLGQLLDGHARILSAGAGDEPVFGLSADSRRINPGDLFVAIPGTHADGSRFIADA 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V++ + + + DV +L+ A R ATI A+TG+ GKT Sbjct: 67 VARGASAVLMEPAAPRPVLPPHVALAFSLDVRHSLSLAAARFYPRQPATIAAVTGTAGKT 126 Query: 121 TTKEMLTIALSSIKKTYACIGSYN------------NHIGVPLTLARMPVDVDFGIFEL- 167 + L + A +G+ A + G+ + Sbjct: 127 SVAFFLRQIWERLGHKAAYLGTIGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVTHMA 186 Query: 168 -GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S G + V T + HL I+ AK +F + + Sbjct: 187 LEASSHGLDQKRLDGVHFTAGGFTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDATAVA 246 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + F + G+ + + + ++ + Sbjct: 247 VTGAPFAANALAWAETRGLKLLPIGEGQATGLDIFGTTGSGTGQKVMFADGSHAIVPLVG 306 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 A A++AL+ GR R + +D ++ Sbjct: 307 RFQLDNALLAAGLAIACGAER---PAALEALAYLTGVPGR--LERIGDDPRRPVFVDYAH 361 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + VL + GR + V G G L ++ V + Sbjct: 362 KPEALAT-----VLDTLRAAVPGRLMVVFG----CGGDRDKGKRPLMGAIAASKADVVIV 412 Query: 407 SG-----FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A++ + H + L GD ++V K Sbjct: 413 TDDNPRSEDPAAIRAEILEGAHGAREIGDRAEAIKAAVALLQPGDALIVAGKG 465 >gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] Length = 489 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 145/474 (30%), Gaps = 43/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL A + + DSR I P + F A G DG D+I A+ K A Sbjct: 6 LSQLLDAKNKALT---ADVLIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124 V + +P+ +++ + ++A + II ITG+ GKT+ + Sbjct: 63 AVFYEANQYNPSIQTKVPLIPFENLQHRIGEIAARFYDDPSCEMEIIGITGTNGKTSCAQ 122 Query: 125 MLTIALSSIKKTYACI-----------GSYNNHIGVPLTLARMPVDVDFG---IFELGMS 170 + AL S I ++ P+ L + ++ + +S Sbjct: 123 FIAQALQSQGIRCGVIGTLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVS 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + V+ IAV T ++ HL +E A AK +F+ + D Sbjct: 183 SHALHQRRVEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQPGLHTGVVNCDDAL 242 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI 288 ++ H L + + G + + + +EVQ Sbjct: 243 GKRIIAHYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLF 302 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L L ++ + D A+ LS GR + + +A Sbjct: 303 GRFNISNLLAVLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQIIVDYAHTPDA 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L+ + H +GR I V G G ++ + + L+ Sbjct: 363 -------LEKALTALREHCQGRLICVFG----CGGDRDRGKRPQMAAVAEQHADQIILTN 411 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ V + D+V++ K Sbjct: 412 DNPRTESPLTIIQDIQAGFKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKG 465 >gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] Length = 488 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWVELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] Length = 486 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 88/474 (18%), Positives = 151/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + + + ++ + DSR ++ F AIKG DGHDF+ + GA Sbjct: 4 LKDILYGVAIEQVVGSTEIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V T + + + + V + AL +A K ++ +TG+ GKTT Sbjct: 64 AAIVET--LPEVIAEGVTYIKVANSATALGVVASNFYHNPSSKLKLVGVTGTNGKTTVCT 121 Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + +Y N + VP T VD + +S Sbjct: 122 LLYKLFKKLGYNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVDAGCEYCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ + V T I HL + AK F+ L N DD Sbjct: 182 SHSVVQHRIDGLEFAGGVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSKAFALTNVDDR 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A ++ + ADF+ + + + L MEV +G Sbjct: 242 NGNVMLQNTRAHKK----TYALNAVADFKAKIIENLFSG----LHLDIDGMEVYFRLVGS 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L D + LS+ EGR Y P Sbjct: 294 FNAYNLLAVYGTALLLEQDRTKVLTVLSMLTGAEGRFDYIIAPNKVIGIVD----YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +++ +S + IS E V G + + V L+ + Sbjct: 350 DALRNILSTIENISSGTESIITVV-----GCGGDRDREKRPIMAQTACDWSHKVILTSDN 404 Query: 411 VL------ALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L D L V GD++++ K Sbjct: 405 PRTEKPEDILNDMLAGVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKG 458 >gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] Length = 484 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 158/472 (33%), Gaps = 52/472 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL I+ +++ + I DSR + P F AI+G DGH FI A+ GA VV Sbjct: 6 LLNDIEYYTVNGDVHLDIKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVV 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLT 127 V D+ + V V+D +L L+ A +I +TG+ GKT+ M+ Sbjct: 66 VTRDVP---LPDGVSVVKVEDSRLSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVK 122 Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171 L + IG+ N IG L + + E+ S Sbjct: 123 SILEQSGRKVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEV--SS 180 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 R I + T + HL S +++ +AK ++F+ T + Sbjct: 181 HSLALNRVAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQNSGLIATNVDDSYGVK 240 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + + KT+Y++G + A ++ S ++ + G V+ + G Sbjct: 241 LKDM------FVSKTVYTYGIEREAHVTASNILSDAKGSTFDIDICGDRRPVIINIPGRF 294 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + D K L GR + FT+I + + Sbjct: 295 SVYNALAAAAACYAMGVSADDISKGLQALKSVPGR---FEVLGTDTDFTVIIDYAHTPDG 351 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 ++L + +GR IA+ G G + + + L+ + Sbjct: 352 ----LENILKSVKDIAKGRVIALFG----CGGDRDAAKRPIMGEIGGRYADFCILTSDNP 403 Query: 412 L-----ALKDALPRSIHVHYS-----ETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + I + E + + D++++ K Sbjct: 404 RSEDPMAIIRQIEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKG 455 >gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] Length = 493 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 160/485 (32%), Gaps = 58/485 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I F + G DG H F+ Sbjct: 1 MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161 GKTTT ++ LS +G+ +G + D Sbjct: 114 GKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219 + + E+ L R + IAV T + HL +E K+ G + Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDL 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + T + + + + ++G AD Q + + V Sbjct: 232 STTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +EV + +G N L + + + + +LS EGR + + Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKSIEGRMEIIDENQDFLVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 352 VDYAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGS 400 Query: 400 NISHVWLSGFHV---------LALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVV 448 V+++ + ++ ++ +++Y E + + D+V+ Sbjct: 401 YSDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 460 Query: 449 V--KS 451 + K Sbjct: 461 IAGKG 465 >gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] Length = 484 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 160/476 (33%), Gaps = 49/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL++I+ +I + G++IDSR I+ AF A+KG DGH FI A++ G Sbjct: 1 MNLQELLKSIKSLAIIGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ + + + V A+ KLA A K ++ +TG+ GKTT Sbjct: 61 AKAILCED--MPEDRTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + + +Y +P VD + Sbjct: 119 ATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKMVDAGCEYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + A+ T + HL E +AK F+ L K+ N D Sbjct: 179 CSSHAIAQRRIGGLTFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDDLPKSAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A TI ++ + ADF+ R + + L +V I Sbjct: 239 DKNGMFMVQNTKA----TIKTYSMERMADFRARIIEMHFAG----MYLNVDGNDVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + LS H GR + + + Y Sbjct: 291 GKFNVSNLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQSSEGVTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + ++ G+ I V G G L ++ V ++ Sbjct: 347 TPDALANVLNAIREV--DKTGQIITVCGA----GGNRDKGKRPLMAQEAVKQSDRVIITS 400 Query: 409 FHVL---------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDVV+V K Sbjct: 401 DNPRFEEPQDIIDDMLAGLNTQQMKKVVSIADRREAIKTACMLAKKGDVVLVAGKG 456 >gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. SK209-2-6] gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. SK209-2-6] Length = 499 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 139/468 (29%), Gaps = 39/468 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L G + ++ IS+DSR F A+ G G FI A+++GA Sbjct: 14 LSEL-----GLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERGAT 68 Query: 67 LVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 ++ + + V V+D AL A T++A+TG+ GKT+ Sbjct: 69 AILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSV 128 Query: 123 KEMLTIALSSIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 + + + + Sbjct: 129 ASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAMEA 188 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + V+ A T HL E +AKA +F + + + + Sbjct: 189 SSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVINMN 248 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A + + + G+ D L + + + + + IG Sbjct: 249 DPRGAEMRAIAAARGQEVLTVGR-GLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLIG 307 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A+N+L+ G+ D + L GR + N +D ++ + Sbjct: 308 GFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGA-SVFVDYAHTPD 366 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 + + + PH GR +A++G G + L + N V ++ Sbjct: 367 AVAT-----AIKALRPHVLGRLLAIVGA----GGDRDAGKRPLMGQAAAENADLVIVTDD 417 Query: 409 ----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 A++ A+ L L GD +++ Sbjct: 418 NPRTEDPAAIRAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICG 465 >gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] Length = 482 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 83/476 (17%), Positives = 149/476 (31%), Gaps = 49/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +L++ I+ ++ + G+ IDSR + F AIKG DGH +I A++ G Sbjct: 1 MTFSELIKGIKTSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A ++ ++ V + K+A ++ +TG+ GKTT Sbjct: 61 AAAILCEE--APQQPQPNVTYAVVKSTEDEVGKVATRFFGDPSKHLKLVGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE---LG 168 +L + + + + P+ L + + E + Sbjct: 119 ATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+GL K+ N D Sbjct: 179 CSSHAIAQKRIGGLTFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDGLPKSAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++ ADF+ R + + + L EV Sbjct: 239 DKNGMVMVQNTKASVK----TYSIQSMADFKARIIECHFQG----MYLAIDGQEVGVQFT 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + A+S H GR + + +A Sbjct: 291 GKFNVSNLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQSPEGFTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +L+ G+G I V G G L ++ V ++ Sbjct: 351 LK------NVLLAIHEVDGKGHIITVCGA----GGNRDKGKRPLMAKQAVQLSDKVIITS 400 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L V DV++V K Sbjct: 401 DNPRFEDPQDIINDMLAGLDAQDQKKVLTIADRKEAIRTACMLAQKQDVILVAGKG 456 >gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] Length = 496 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 144/476 (30%), Gaps = 36/476 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + G V G+ D+R + P F AI+G DGH FI AV KG Sbjct: 1 MKLQHLFSILPGIPENAFSHIEVTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +VV G + V V + L+ LA + +TG+ GKT+ Sbjct: 61 AAALVVEDKAKIPEGYEGV-VVQVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSV 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFELG 168 M L+ K IG+ N+H+G P + R + Sbjct: 120 TYMTEAILNHGKIPTGVIGTVNHHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V + + T + HL + +E AK +F L + Sbjct: 180 VSSHALDQRRVDSVPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFA 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + K++D + K + +V EV Sbjct: 240 IVNTADKFGRRLRVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVWTPVGEGEVRLPMS 299 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L LG ++ I+AL F GR + N F ++ Sbjct: 300 GTHNVMNALAALGAGLSAGLPLNICIEALDRFTGVPGRLQSVPNDKNLSVFVDY--AHTP 357 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + + + R + G G L ++L V ++ Sbjct: 358 DALENVLMALTKVRENLQSQSRIWTIFG----CGGDRDKGKRPLMAEMALKYSDEVVITS 413 Query: 409 FHVL------ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++D L +GDV+++ K Sbjct: 414 DNPRTEDPQTIIQDILAGVGGANKAKATTVVDRKDAITQTLKRAQEGDVILIAGKG 469 >gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 486 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 96/475 (20%), Positives = 167/475 (35%), Gaps = 46/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ I SI VN I+ DSR + F +KG DGH +I A++ G Sbjct: 1 MNLKSILKGIDYESIQGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V+ D+ I +I + +D AL + K II +TG+ GKTTT Sbjct: 61 AKVIVIQDDI--EIKDENITIIKCNDTRKALALMGANYYDNPSSKIKIIGVTGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 M+ L K IG+ N IG + V++ + E Sbjct: 119 AFMIKHILEESNKKVGLIGTIANFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + + + T + HL E AK ++FE Sbjct: 179 V--SSHSLALDRVYGIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFERSRIKIVNV-- 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ + + + L IYSF +DF+ + S + ++ L+ + + V + Sbjct: 235 -DDNYGRQVISDLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLK-EDEQFVLN 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L + L + + GR +R N G+ +ID ++ Sbjct: 293 IPGEYNIYNALGAIAACFKLGMPIKDIKSGIENVV-VLGRCERVAKEYNLGYEIIIDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +GR I+V G G +S + Sbjct: 352 TPDGLE-----NILKTAKAFTKGRLISVFG----CGGDRDKVKRPEMGKISTDIADITIV 402 Query: 407 SGFHVLA------LKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +KD A + E +D DV+V+ K Sbjct: 403 TSDNPRSEEPLSIIKDIEAGIDKDNYFVIENRKEAIKKSIDIALDNDVIVIAGKG 457 >gi|239814044|ref|YP_002942954.1| Mur ligase middle domain protein [Variovorax paradoxus S110] gi|239800621|gb|ACS17688.1| Mur ligase middle domain protein [Variovorax paradoxus S110] Length = 1584 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 111/497 (22%), Positives = 185/497 (37%), Gaps = 45/497 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQ----------EAFFA------ 45 P+WT L + G + P FVN + F A Sbjct: 1099 PVWTAEHLQRITGGRWLVEPPPGWFVNSVV-------RGPRHLPLLPPPALFVAADYDTL 1151 Query: 46 ---------IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96 + G + D H + +K AG VV + P+ +DD + + Sbjct: 1152 AAHENYSKRLPG-NPDRHADLPSLEKKLAGAVVA---HAVEGLAPDFPLLQLDDPIRGMI 1207 Query: 97 KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 L AAR R K ++ +TG+VGK++T ML L + + + +YN+ +GVP LA + Sbjct: 1208 ALGEAARARFKGLVVGVTGTVGKSSTIAMLRDLLPEAARVHTTVDNYNSRVGVPAMLANL 1267 Query: 157 PVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 D D I E+ S L R + RPH+A+IT + + S +E+ A+ K+ IF Sbjct: 1268 GPDADVCILEMAQSGLWMDRGPISLMARPHVAIITEVGLSQTRQASTLEQTAAFKSRIFL 1327 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 GLE G + + ++ AL I+ G +A+ ++ Sbjct: 1328 GLEPGGVAIVPDHIPCLAQVV-RAAALTAGAIWVVGPGPDANIRVLDTHPEPGGGCRVRI 1386 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 I + A A + R Sbjct: 1387 ATEGRSFEYLFPIASAGLVRNSALAFAALLAMGFDADAACARMPGVRLPASVMQVRTLRT 1446 Query: 336 QGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIA---VLGDMCEMGELSQSFHI 390 + TLID+S+NA SM+ A+ + + VLG + +G SQ+ H Sbjct: 1447 RAGIEATLIDDSWNAEVMSMRNAMEFVRTYRRADDAPVQRKIGVLGRIVNLGRDSQALHR 1506 Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 LAE L I H+ G + L++ +P + + + + L ++ + L DGD+V++K Sbjct: 1507 GLAEPLLASGIEHLVTHGAEMRWLREDVPAGLLGPHFDDAEKLADYLGTFLRDGDLVLLK 1566 Query: 451 SSN-SCGFYRLINLLLE 466 F + L + Sbjct: 1567 GDRVGSDFGTIPQRLQQ 1583 >gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] Length = 488 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 152/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KDDVELHSMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAI 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRSAVMGTIGN--GLLGQIIEAKNTTGSAVEIQSSLSNFKQ 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFASIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ + L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGHQWLTELPDAIAVSMNADFKVGLHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 499 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 82/483 (16%), Positives = 155/483 (32%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I F + G DG H F+ AV Sbjct: 10 LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L LS +G+ +G + D+ Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL +E K+ G + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + ++G AD Q + + V + Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGQI 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV + +G N L + + + + +LS EGR + + Sbjct: 301 EVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVD 360 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409 Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ +++ + + D+V++ Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] Length = 492 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 77/478 (16%), Positives = 145/478 (30%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L+ I+ P V+ + +DSR + P + F AIKG DG FI A++K Sbjct: 1 MRDLKSILKYIEI----DAPSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEK 56 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+ + + S+ + V ++ L +LA + +I +TG+ GK+T Sbjct: 57 GAVAVIADRLCEFDVAFESL--YLVSELDKKLAELASRFYDKPSHNLDLIGVTGTNGKST 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T M+ + G P L + + Sbjct: 115 TTAMIAHL--AQYCNTQSAIIGTLGFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLV 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + AK +F + + Sbjct: 173 AMEVSSHGLVQHRVAQCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFDPQLVVLN 232 Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ + L+ I + E ++ ++V Sbjct: 233 QDDNQAGQWLEKYDFNNLICYGRKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVK 292 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N+ L + L ++ I P GR + + A Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTCVVDYAH 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L + H G V G G L + N + V Sbjct: 353 TP-------EALALALQALQKHVPGGVSCVFG----CGGDRDKGKRVLMAQAAEKNANKV 401 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L H + ++ +VV++ K Sbjct: 402 IITSDNPRSEDPNVIIAEVASGLAAPQSAHLEADRASAISYAINNAASNEVVLIAGKG 459 >gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] Length = 487 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 79/473 (16%), Positives = 159/473 (33%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + S+ + + DSR + + F AI+G DGHD+I AV +GA Sbjct: 4 LKDILYRVTLESVVGNTAIAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGAL 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + I V D AL +A +I ITG+ GKTT Sbjct: 64 AIICEE--MPQQIVNGITYVKVADTSSALATIASNYYGNPSANLKLIGITGTNGKTTIAS 121 Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMS 170 +L + P +L + + +S Sbjct: 122 LLYQLFKKAGYKTGLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T + + T ++ HL E K + F+ L KT +N DD Sbjct: 182 SHGIHQKRTEGLHFEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDELPKTAFALVNNDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ AD++ + + ++VQ Q ++++ Sbjct: 242 NGPVMVQNTKAKKV----TYALKSYADYRAQILENQLSGLLLKVQDQEVWVKLI------ 291 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L I + ++AL + E R++ +++G T I + Y P Sbjct: 292 -GSFNAYNLLAIFAAAELLELDQMEALQLLSELESVSGRFQYFISEGNVTAIVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++K + ++ I E + G+ + + + S + + S Sbjct: 350 DALKNVLETINDIRTKNEELITVI----GAGGDRDTTKRPKMGNIASALSTKAIITSDNP 405 Query: 409 --FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ + + + + + GD++++ K Sbjct: 406 RSENPEAIIEQIEAGVEPIHYKRILSITDRKQAIKTACQLANAGDIILIAGKG 458 >gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 499 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 82/483 (16%), Positives = 155/483 (32%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I F + G DG H F+ AV Sbjct: 10 LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L LS +G+ +G + D+ Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL +E K+ G + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + ++G AD Q + + V + Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNINLSPKGIRFLVSSFNGEI 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV + +G N L + + + + +LS EGR + + Sbjct: 301 EVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVD 360 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 361 YAHTLDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409 Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ +++ + + D+V++ Sbjct: 410 DFVFITSDNPCSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] Length = 482 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 86/474 (18%), Positives = 154/474 (32%), Gaps = 49/474 (10%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +L+Q I S+ + I +S+ I F AI G +YDGHDFI A+++ Sbjct: 1 MNAQELIQIIPDILSVKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALER 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GAG+V+ + V D AL + K +I +TG+ GKTT Sbjct: 61 GAGVVIGEKALDLG----GKLYIRVKDSRKALALSSAWFYGYPADKLKLIGVTGTSGKTT 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNN--------HIGVPLTLARMPVDVDFGIFE------L 167 +++ L I IG+ N + + E + Sbjct: 117 VTYLISEMLKDIGICTGIIGTIGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAM 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ + V T + HL E+ ++K ++F ++ + Sbjct: 177 EVSSHSLKLQRVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQSKQAVINIDDE 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + Y++G K AD + + + ++ + K V + Sbjct: 237 SGKRLLSIINI-------PRYTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFYST 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L + L +D I L GR + NQG ++D ++ Sbjct: 290 PGLFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELVEN--NQGIIVIVDYAHK 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +VL I G+ I V G G + +S + ++ Sbjct: 348 PDG-----LKNVLLTIREFCTGKIITVFG----CGGDRDKGKRPIMGKISSELSDYTIIT 398 Query: 408 GFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ + + I E S GD V++ K Sbjct: 399 SDNPRSEKPEAIIEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKG 452 >gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] Length = 487 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 156/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I+ I V G++IDSR I F A+KG DGH FI A++ G Sbjct: 1 MKLQELLKNIEPVQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFIPKALELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + + V A+ K+A K ++ +TG+ GKTT Sbjct: 61 AKSVLCED--MPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE---LG 168 +L + + + P+ L + + E + Sbjct: 119 ATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNMLLGKMVEAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + ++ + T + HL E +AK F+GL KT N D Sbjct: 179 CSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKTAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ ADF+ R + + L+ EV I Sbjct: 239 DKNGMIMVQNTKA----TVKTYSTRSMADFRARILECHFGG----MYLEIDGREVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + +S H GR + + Y Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPIQSPEGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ ++ + ++ G I V G G L ++ V ++ Sbjct: 347 TPDALENVLNAIHEVLEGKGGEVITVCGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 402 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + V GDV++V K Sbjct: 403 DNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVAGKG 458 >gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 500 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 157/475 (33%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL++ I + + I+ +S++ AF IKG DGH++I A++ GA Sbjct: 17 LKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGA 76 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 LVVV+ S I + AL ++ +I +TG+ GKT+T Sbjct: 77 RLVVVDEFFDTSKIDGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTT 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168 M+ L + + IG+ N IG + +M + + + Sbjct: 137 FMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVV-ME 195 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + + V T + HL +E +AK ++FE +K + Sbjct: 196 VSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEMSKKRVVNADDSW 255 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++ K +A + K ++ E+ GK E+ + Sbjct: 256 GKRIIEM--------YPDCVTYAKDSDAQVCTKNVKLFVNKNQFELWYNGKKEEITLNIP 307 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L L ++DT K L GR + + + Sbjct: 308 GLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNERFTIVIDYAHTPDG 367 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++++ + EGR++ + G G + ++ V ++ Sbjct: 368 -------LLNLMKTVDDVAEGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIVTS 416 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + ++ + + + D +V+ K Sbjct: 417 DNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKG 471 >gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 1; AltName: Full=Meso-A2pm-adding enzyme 1; AltName: Full=Meso-diaminopimelate-adding enzyme 1; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium acetobutylicum ATCC 824] gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum EA 2018] Length = 482 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 83/476 (17%), Positives = 158/476 (33%), Gaps = 51/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ ++ I ++ ++ DSR + + FF I+G DGHDFI AV+KG Sbjct: 1 MKLKKIIGDVKYELICGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V + V V+D A+ + K +I ITG+ GKTT+ Sbjct: 61 ADVIVCTK---VPKKLPNCTVVKVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTS 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFE 166 M+ L S IG+ N+IG + +D+ + E Sbjct: 118 TYMMKSMLESSGYKVGLIGTIANYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH + + +V + T + HL E AK +F+ +++ + Sbjct: 178 V-SSHSLYLDRVYGIV-FEEGIFTNLTQDHLDFHKTFENYYKAKMILFKNSKRSIINIDD 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + ++G ++ AD + K S + ++ +G V + Sbjct: 236 KYG-------ERVFKDAGNDKITYGLTEKADLKAENLKMTSRGTEFDLCYRGLREHVKIN 288 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L ++ ++ L+ GR + N F ++D ++ Sbjct: 289 IPGKYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLDYAH 348 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + VL +GR I+V G G + + + Sbjct: 349 TPDGLE-----KVLKASREFTKGRLISVFG----CGGDRDKTKRPIMGEIGSKLSDIAVI 399 Query: 407 S---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + +V E DV+V+ K Sbjct: 400 TSDNPRSENPEEIIKDIVQGIKTDNYV-IVENRKEAIKKAMLMAKKDDVIVLAGKG 454 >gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 484 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 90/479 (18%), Positives = 152/479 (31%), Gaps = 50/479 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M +F L A++ + I IDSR + + F A+ G DG FI A Sbjct: 1 MKSTLSFDALAAAVRAGLLN---------IRIDSRKVRQGDVFVALPGSSVDGGAFIADA 51 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 +++GA VV + + V +D AL LA A + ++ ITG+ G Sbjct: 52 LERGASYVVC-RPCSVPVQTGGAAVVVAEDPRKALGLLAAARYDTADTGFPLVGITGTNG 110 Query: 119 KTTTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTL--ARMPVDVDFGIFE- 166 KTT +L + + P + M D+ E Sbjct: 111 KTTCTYLLDHLFRTAGHVTGLLGTVNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEA 170 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTI 223 + +S + R A++T + HL +E SAK+ +F ++ Sbjct: 171 AFMEVSSHALDQQRVSGARFAAALLTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVC 230 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 +N DD + L + ++ Q + + + +GK+ E+ Sbjct: 231 AVNADDPYGRRLLPQLGRGVGYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWEL 290 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G A N+ + V+ + L+ F GR +R F Sbjct: 291 RSPLVGAFNASNLAGVQAAGLAMGLPVEAM-QGLASFSGVPGRMERIENDKGLNVFVDYA 349 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A +VL + G R IAV G G L + Sbjct: 350 HTPDA-------LENVLRALRAAGFARVIAVFG----CGGDRDRTKRPLMGQAVCRHADV 398 Query: 404 VWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + + +K L + HV GD V+V K Sbjct: 399 AVLTSDNPRTEDPVAIMADVKPGLAQCDHVVEEPDRRKALAAAVEMARPGDAVLVAGKG 457 >gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] Length = 488 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] Length = 482 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 90/474 (18%), Positives = 163/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + + G++IDSR + + F A++G DGH +I A+QKGA Sbjct: 3 LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A + ++ +TG+ GKTT Sbjct: 63 AILCEDIPEEPVA--GITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ + K N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVIESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] Length = 488 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 154/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWVELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 483 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 75/472 (15%), Positives = 149/472 (31%), Gaps = 43/472 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + + + + DSR + FFAIKG DGH +I AV+ G Sbjct: 1 MDLKQMSELLGYTLEH--ENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + + + F V + AL ++ ++ + G+ GKTT Sbjct: 59 AIAVVGEESL-----NPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTI 113 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFE----------LGM 169 ++ + IG+ + +G +R + D++ + E + + Sbjct: 114 TYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEV 173 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + + T I HL E+ K F Sbjct: 174 SSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDK-KMAII 232 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + ++ I ++G AD + + E++ + ++G+ + I Sbjct: 233 NCDDEHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQ--MTIP 290 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+ L +++ + + + R+ T++ + + Sbjct: 291 LFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPSGVTVVIDYAHNP 350 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 A VLS ++ G I VLG G + + Y HV+ + Sbjct: 351 DA----IFQVLSCLNVISTGNIITVLGA----GGNRDKAKRKIMGRHATYLSDHVFFTSD 402 Query: 410 HVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + V+Y + D VV+ K Sbjct: 403 NPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKG 454 >gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] Length = 485 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 75/472 (15%), Positives = 149/472 (31%), Gaps = 43/472 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + + + + DSR + FFAIKG DGH +I AV+ G Sbjct: 3 MDLKQMSELLGYTLEH--ENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + + + F V + AL ++ ++ + G+ GKTT Sbjct: 61 AIAVVGEESL-----NPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTI 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFE----------LGM 169 ++ + IG+ + +G +R + D++ + E + + Sbjct: 116 TYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEV 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + + T I HL E+ K F Sbjct: 176 SSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDK-KMAII 234 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + ++ I ++G AD + + E++ + ++G+ + I Sbjct: 235 NCDDEHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQ--MTIP 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+ L +++ + + + R+ T++ + + Sbjct: 293 LFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPSGVTVVIDYAHNP 352 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 A VLS ++ G I VLG G + + Y HV+ + Sbjct: 353 DA----IFQVLSCLNVISTGNIITVLGA----GGNRDKAKRKIMGRHATYLSDHVFFTSD 404 Query: 410 HVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + V+Y + D VV+ K Sbjct: 405 NPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKG 456 >gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] Length = 482 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 94/485 (19%), Positives = 161/485 (33%), Gaps = 66/485 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P+ T +L + P V G++ DSR + P + A++G DGH FI A Sbjct: 1 MTPVTTVAELFALYRA----PGPPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVG 118 VQ+GA +V + +P V D AL++LA A +I +TG+ G Sbjct: 57 VQRGAVAIVGEEPLEP-----GVPYLRVPDARRALSRLAAAFYGFPSTRLFVIGVTGTDG 111 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------DFGIFEL----- 167 KTTT ++ L+ + I + G L + E+ Sbjct: 112 KTTTSCLVHHLLTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGL 171 Query: 168 -----GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 S + V +AV T ++P HL +E AKA + Sbjct: 172 THAVLETSSHALAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAALVNRAG---F 228 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN + L ++ + ++ + ++ ++ ++ G + E Sbjct: 229 SILNAGCPYAMRL--------THRPHTTYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGE 280 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG + +N L L ++ A+ AL+ F GR + + ++ Sbjct: 281 AFLPMIGRYNVENALAALAAAHRAGVPLEEALPALARFSGVPGRMQILQA---HPIRAVV 337 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + L+ + P GR I V+G GE + L Sbjct: 338 DFAHTPKALA-----KALTALRPTTPGRLIVVIGAA---GERDPAKRAPLGRTAVTL-AD 388 Query: 403 HVWLSGFHVL-----ALKDALPRSIH-------VHYS--ETMDGLFLFIQSSLVDGDVVV 448 + A+ + R HY+ + S GD VV Sbjct: 389 FAVFTEEDARSEDVHAILQEMERGAREAGGVRGTHYALKPDRRDAIRYALSLARPGDTVV 448 Query: 449 V--KS 451 K Sbjct: 449 FAGKG 453 >gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Haemophilus influenzae 10810] Length = 488 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLLGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 487 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 78/473 (16%), Positives = 155/473 (32%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + ++ + I DSR ++ + F A++G DGHD+I AV +GA Sbjct: 4 LKDILYKVTLETVVGNTAVAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGAL 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + I V D AL +A +I ITG+ GKTT Sbjct: 64 AIICEE--LPEQIVNGITYVKVADTSSALATIASNFYGNPSANLKLIGITGTNGKTTIAS 121 Query: 125 MLTIALSSIKKTY---------ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L Y P + + +S Sbjct: 122 LLYQLFQKAGYKTGLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T +R + T ++ HL E K + F+ L KT +N DD Sbjct: 182 SHGIHQKRTEGLRFEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKTAFALVNTDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ AD++ + + +++Q Q ++++ Y Sbjct: 242 NGAVMVQNTKAKKV----TYALKSYADYKAQILENQLSGLLLKIQDQEVWVKLIGSFNAY 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ + I+AL + E R++ +++G T I + Y P Sbjct: 298 NLLAIFATAELLGL-------DQIEALKLLSELESVSGRFQYFISEGNVTAIVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++K + ++ I E V G+ + + + S + + S Sbjct: 350 DALKNVLETINDIRTKNEELITVV----GAGGDRDTTKRPKMGHIASALSTKTIITSDNP 405 Query: 409 --FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + GD++++ K Sbjct: 406 RSEKPEAIIEQVEAGVEPINYKKILSITDRKQAIKTACQLANPGDIILIAGKG 458 >gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] Length = 488 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] Length = 493 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 75/459 (16%), Positives = 151/459 (32%), Gaps = 42/459 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P + I +DSR + P F AI+G DG FI AV +GA VV D S Sbjct: 16 APALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDGEFIPPST 75 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P G+ D+ L+ LA + K ++ ITG+ GK+TT ++ + + Sbjct: 76 PVPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVANWRTLLGGKAGV 135 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVR 183 +G+ N G+ L + + +S G ++ + Sbjct: 136 MGTIGN--GLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALP 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 AV T ++ HL +E +AK ++ + ++++ + D+ + L+ A+ Sbjct: 194 FAAAVFTNLSRDHLDYHGTMEAYGAAKEQLLQLVDESNAVINRDDELGAKWLEKYPAAVA 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ + ++ + + +G N+L +G++ Sbjct: 254 FSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSAPLLGRFNVSNVLAAMGVM 313 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +L D + + P GR + + + +A L + Sbjct: 314 LVLGYDFNELLATAPKLQPVTGRMECFGGGDTPLAVVDYAHTPDA-------LEKALQAL 366 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414 H G+ ++G G + ++ V L+ + + + Sbjct: 367 RVHCTGQLWCLIG----CGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEEPARIMADM 422 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L V D+++V K Sbjct: 423 VAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKG 461 >gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 508 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 92/484 (19%), Positives = 156/484 (32%), Gaps = 53/484 (10%) Query: 7 FHDLLQAI-QGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + L++A+ + H +G V GIS D+R + P F A+ G H DG FI +A++KG Sbjct: 7 LNKLVKALPKAHIVGNYSDDTVVTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VVV + L +PV VD+ A ++LA K +I +TG+ GKTTT Sbjct: 67 AKAVVVE---GSYQPDLQVPVIIVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGKTTT 123 Query: 123 KEMLTIALSSIK-------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--- 166 M++ L S + ++ P L + + E Sbjct: 124 TYMISSMLESADASTGFITTVDYKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAV 183 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIF 224 + S G V +AV T + HL +E+ A+ G Sbjct: 184 IESSSHGLKLHRLEDVAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCG 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + ++++ + D ++ E V +G S E+ Sbjct: 244 KWGVINLDDPNAQLYIDSTKGKVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEI 303 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L +G+ +D AL F GR + FT++ Sbjct: 304 NLPISGDYNVYNALAAIGVAITQNIPIDVCKSALERFTGVPGR---MQVISMGQPFTVVI 360 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + + VL + GR AV G E + ++ Sbjct: 361 DYAHTEDS----LEKVLITLKQRTRGRLFAVFGSAGE----RDPYKRAPMGKVAAKYADF 412 Query: 404 VWLSGFHVL---------ALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L+ + + S GD V++ Sbjct: 413 MILTNEDPRGEDEMQILLDIAEGARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLL 472 Query: 450 --KS 451 K Sbjct: 473 AGKG 476 >gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] Length = 488 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus influenzae F3031] gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae F3031] Length = 488 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 154/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWVELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGAGFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetococcus sp. MC-1] gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetococcus sp. MC-1] Length = 495 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 149/474 (31%), Gaps = 46/474 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L I ++ + + + DSR P F A+ G DG D+I A++ A Sbjct: 4 TLKSLAANIDQLTVLGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 ++ + + + P D AL +A A + K I ITG+ GK+T Sbjct: 64 AAILHD---GSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVA 120 Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTL-------ARMPVDVDFGIFEL 167 M L + I + P + + + + + E Sbjct: 121 SMCATILRHSGQRVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVME- 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + ++P +A+ T ++ HL + AKA++ L Sbjct: 180 -ASSHALDQHRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKL-FREYHPKLALLPS 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ + L + G+ ++G+ ++ + + +Q + +S V Sbjct: 238 SDAHAQALNSICREQGVAV-QTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMA 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L + D++T + L+ F GR + N + + Sbjct: 297 PGRFNLDNALAAASACLGMDLDLETVAEGLNRFQSVAGRVQAIHEGQNFAVLVDFAHTPD 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWL 406 A +LS + P G+ V G G S + E + Sbjct: 357 ALD-------RLLSSLRPLTPGKLWVVFG----CGGDKDSGKRPHMGECAGRLAHFPIIT 405 Query: 407 SG----FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ + R + + + + GD VV+ K Sbjct: 406 DDNPRSEDPAAIRAQIMRGCRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKG 459 >gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] Length = 511 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 158/463 (34%), Gaps = 45/463 (9%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMV 75 +G + ++ +S+ + P+ F A++G DGH FI A+++GA VV Sbjct: 27 TVVGSATARKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGAVAVVGEFVPEA 86 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI 133 + V + AL LA + + +I ITG+ GKTTT ++ L++I Sbjct: 87 FAERFPKASFVQVSNSRRALGILATIFHMNPARRLRLIGITGTNGKTTTAFLVYHMLNAI 146 Query: 134 KKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 + IG+ G L R V + +S + Sbjct: 147 GQETGLIGTVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVSSHALEQERV 206 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV T + HL E AK ++F+GL T N DD + A + Sbjct: 207 AGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRATALYNIDDPSGPAMVADT 266 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A S+G+ ++A ++R S + L +G A N+L Sbjct: 267 QA----CCISYGQREDAQIRMR----IVGHSLEGLTLNIDGRFQRFPLVGCFNAYNLLAA 318 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G+ + D D ++AL GR +R+ T Y P +++ + Sbjct: 319 YGVGRAMGLDPDLLLEALGRVPQIPGRFERF----TFEDGTTAIVDYAHTPDALENVLRT 374 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 + ++ P G V G G + ++ V ++ + Sbjct: 375 IREVMPEGARLWC-VFG----CGGERDRGKRPMMGAVAERLADCVIVTSDNPRSEDPLQI 429 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + GDVV+V K Sbjct: 430 FEDIRQGMRHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKG 472 >gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. 1-1C] Length = 484 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 87/486 (17%), Positives = 155/486 (31%), Gaps = 57/486 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + GIS DSR + P F A+KG DG ++ A+Q+GA +++ + + V +LS Sbjct: 17 ASIEITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLS 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136 IPV V D L A T++A+TG+ GKT+ + I Sbjct: 75 IPVIHVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGT 134 Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187 + + P + + + E S G + V A Sbjct: 135 VGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAAA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + H+ IE AK +F L L + D + + + + Sbjct: 195 AFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQV 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G++ L + + + +E ++ G N LM G+ Sbjct: 255 LTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A D ++L GR + G +D ++ +L + P Sbjct: 314 APSDMVFRSLEKLQGAPGRLELVGN-TEDGAPIYVDYAHKPEALE-----QMLLSVRPFT 367 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDAL 418 +GR + V G G L ++ V ++ + + A+ Sbjct: 368 QGRLVLVFG----CGGDRDQGKRALMGKIAGNKADIVIVTDDNPRTEAPEKIRKDILQAV 423 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSN-------------SCGFYRLINL 463 P +I + + L GD ++V K + S ++I Sbjct: 424 PEAIEI---ADRGQAIEYAVELLKAGDTLIVAGKG-HENGQIIGQEIYPFSDRL-KVIAA 478 Query: 464 LLEEFP 469 L E Sbjct: 479 LKERNK 484 >gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] Length = 490 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 151/479 (31%), Gaps = 51/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ ++ + ++GI DSR + F A++G DGH +I A++KGA Sbjct: 3 LKELIHPLEVLEVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGAA 62 Query: 67 LVVVNTDMVASIGSLSI-----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 +V V ++ + V D AL K A ++ +TG+ GK Sbjct: 63 AIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGK 122 Query: 120 TTTKEMLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165 TT +L + Y + P L VD Sbjct: 123 TTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVDAGCEYA 182 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + + + + T + HL +E AK + F+ L + Sbjct: 183 FMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPASAFALT 242 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD ++ + A + ++ ADF+ + + E + M V + Sbjct: 243 NADDKSGLVMLQNTAAKKL----TYSLRTLADFKGKILESHFEGTEMLVNGREVM----T 294 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G A N+L G L D + + LS H GR + + L + Sbjct: 295 RFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPLGYTAIVDYAHT 354 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +A + VL G GR I V+G G + + + Sbjct: 355 PDALTNVLSGIHEVLD-----GNGRVITVVG----CGGNRDKGKRPIMAKEAAKLSDQLI 405 Query: 406 LS---------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + + L + GDV++V K Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAGKG 464 >gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] Length = 492 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 160/485 (32%), Gaps = 58/485 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I + F + G DG H F+ Sbjct: 1 MKLKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ +P V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEMPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVD 161 GKTTT +L LS + N P + + + D Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219 + + E+ L R + IAV T + HL E K G + Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDL 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + T + + + + ++G AD Q + + V Sbjct: 232 STTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNITLSPKGIRFLVSSFNG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +EV + +G N L + + + + +LS EGR + + Sbjct: 292 EIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 352 VDYAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDTKKRSIMGGIAGS 400 Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVV 448 V+++ + + ++ ++ +++Y E + + D+V+ Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDIVL 460 Query: 449 V--KS 451 + K Sbjct: 461 IAGKG 465 >gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] Length = 495 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 158/475 (33%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL++ I + + I+ +S++ AF IKG DGH++I A+Q GA Sbjct: 12 LKDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGA 71 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 L+VV+ S I + AL ++ +I +TG+ GKT+T Sbjct: 72 RLIVVDEFFDTSKIKGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTT 131 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168 M+ L + + IG+ N IG + +M + + + Sbjct: 132 FMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMRNEGVDSVV-ME 190 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S F + + V T + HL +E SAK ++F +K + Sbjct: 191 VSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSKKRVINADDSW 250 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++ K NA R K ++ ++ K E++ + Sbjct: 251 GKRIIEM--------YPDCMTYAKDSNATVCARNIKLYVNKNQFDLWYNDKKEEILLNIP 302 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +L ++DT K L GR + + + Sbjct: 303 GLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNEKFTVVIDYAHTPDG 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++++ ++ +GR++ + G G + ++ V ++ Sbjct: 363 -------LLNLMRTVNEVADGRKVLLFG----CGGDRDRAKRPIMGEIAGRMADFVIVTS 411 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + ++ + + + D +V+ K Sbjct: 412 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 466 >gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] Length = 485 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + LL+++ + + GI++DSR + P + F A+KG DGH +I A++K Sbjct: 2 MMELDILLKSVSVVRVEGDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEK 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA VV + + + V D A+ +L+ SK ++ +TG+ GKTT Sbjct: 62 GAVAVVCEA--WPEVQAEGVTYVQVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTT 119 Query: 122 TKEMLTIALS---SIKKTYACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167 +L + + +Y + VP D + Sbjct: 120 IATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFM 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + ++ + T + HL E AK F+GL K N Sbjct: 180 EVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNV 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A + ++ ADF+ + ++ E + L EV Sbjct: 240 DDRNGMIMVQNTKA----VVNTYSLRAVADFKAKVLEESFEG----MCLDVNGKEVSVPF 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG N+L + + + ALS P GR + R Y Sbjct: 292 IGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETIRSREGVTAIVD----YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ +S +++I G I V G G + ++ N V ++ Sbjct: 348 HTPDALVNVLSTVNEI-LKRRGEVITVCGA----GGNRDKGKRPIMAQEAVKNSDRVIIT 402 Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDVV+V K Sbjct: 403 SDNPRFEEPQEIINDMLAGLDKEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKG 459 >gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 495 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 156/475 (32%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL++ I + + I+ +S++ AF IKG DGH++I A++ GA Sbjct: 12 LKDLIENIDAMETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGA 71 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 LVVV+ S + + AL ++ +I +TG+ GKT+T Sbjct: 72 RLVVVDEFFDTSKIEGKVDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTT 131 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168 M+ L + + IG+ N IG + +M + + + Sbjct: 132 FMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVV-ME 190 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S F + + V T + HL +E +AK ++F +K + Sbjct: 191 VSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMSKKRVVNADDSW 250 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++ K +A + K ++ E+ GK E+ + Sbjct: 251 GKRIIEM--------YPDCVTYAKDSDAQVCAKNIKLFVNKNQFEMWYNGKKEEITLNIP 302 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L L ++DT K L GR + + + Sbjct: 303 GLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNERFTIVIDYAHTPDG 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++++ + EGR++ + G G + ++ V ++ Sbjct: 363 -------LLNLMKTVDDVAEGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIVTS 411 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + ++ + + + D +V+ K Sbjct: 412 DNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKG 466 >gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] Length = 486 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 157/476 (32%), Gaps = 52/476 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ + S+ V I DSR + F A++G DGH FI +QKGA Sbjct: 3 IKDLIYKVSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 VV ++ + + V D AL +A K ++ +TG+ GKTTT Sbjct: 63 AVVCE-ELPEIESTADCTIIQVKDSAEALGMIASNFYDSPSSKLKLVGVTGTNGKTTTVT 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELG 168 +L + Y + + + I + Sbjct: 122 LLYRLFRKL--GYKTGLLSTVENIIEDKVVQATHTTPDAISLNKLLADMVKAGCTHCFME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ ++ + + I HL +E AK F+GL +N D Sbjct: 180 VSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAKKLFFDGLPNDSFALINSD 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A Y++ ADF+ + + M+V ++ + Sbjct: 240 DKRGRVMIQNTRA----KTYTYSLLALADFKGKLISTTMQGLEMDVDGIQAWFRLIGNFN 295 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 Y++ + + + L E R+ ++ T+I + Y Sbjct: 296 AYNLLAVYATAVLLGE-------DKEEVLMQLSTIEAANGRFEQQISATRITVIVD-YAH 347 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++K + ++++ + I V+G G + + ++ HV L+ Sbjct: 348 TPDALKNVLETITELKGANK--IITVVG----CGGNRDAAKRPVMADIACQFSDHVVLTS 401 Query: 409 -----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + + + GD+++V K Sbjct: 402 DNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILVAGKG 457 >gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. WCH70] gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70] Length = 490 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 80/460 (17%), Positives = 148/460 (32%), Gaps = 50/460 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I +DSR + F IKG DGHDF AV+ GA V+ + + Sbjct: 19 ENPTITSIEMDSRQVKNGALFICIKGFTVDGHDFAKQAVENGAVAVIAERPL-----DVD 73 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V D A+ LA A + + +I +TG+ GKTTT ++ K I Sbjct: 74 VPVIVVRDSRRAMAMLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEHIARKANKKTGLI 133 Query: 141 GSYNNHIGVPLT----------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ + IG + VD + E+ L R Sbjct: 134 GTVHIKIGDHTYPTKNTTPESLLLQRTFKQMVDEGVDVAVMEVSSHALHMGRVHGCDYD- 192 Query: 185 HIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV T + HL +EE A G + + + Sbjct: 193 -VAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASKYYKHM 251 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++ ++G ++D +K ++ ++ V IG N+L + Sbjct: 252 TAASVITYGIETDSDIMAKKIDIVPSGMSFDLITPNGTVRVKTRLIGLFNVYNLLAAVSA 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + ++A+ GR + FT+I + Y P S++ + + Q Sbjct: 312 CLVSGIPLPVIVEAIEEISGVAGR---FETVDEGQNFTVIVD-YAHTPDSLENVLKTIRQ 367 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + V+G G L ++ + + Sbjct: 368 FAQKK---VYVVVG----CGGDRDRTKRPLMAKTAVKYADVAIFTSDNPRSEDPEQILRD 420 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ +P +V + +GD++++ K Sbjct: 421 MEAGVPGERYVTIV-DRKEAIYYAIEQAQEGDIILIAGKG 459 >gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] Length = 487 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 158/476 (33%), Gaps = 46/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + D+L + +++ +V I +SRS+A + F AIKG DGHD+I +A+++ Sbjct: 1 MTSLIDILYKVTINAVVGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIENAIKQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA VV + I V+D AL +A ++ +TG+ GKTT Sbjct: 61 GAIAVVCE--YLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFG-IFEL 167 +L ++ + + ++ + + Sbjct: 119 IASLLFQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + + T ++ HL E K F+ L + N Sbjct: 179 EVSSHGIHQKRTQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKKSFFDNLSSSAFALTNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A Y +G A+++ + + +++ ++ Sbjct: 239 DDKNGAIMLQNTKA----KQYKYGLKNYANYKAQILENSFSGMLLKINDSDVWTRLI--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 N L I + + L + E R++ +++ T I + Y Sbjct: 292 ----GGFNASNVLAIYATAELLGLEKTEILRLISELESVSGRFQYLISEENITAIVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ I E + G+ + + + S + ++ S Sbjct: 347 HTPDALKNVLETINSIRTKNEELITVI----GCGGDRDATKRPKMGHIASALSTKAIFTS 402 Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + GD++++ K Sbjct: 403 DNPRTEVPELIIEDIEKGVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKG 458 >gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] Length = 485 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 155/474 (32%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L I ++ + I+ DSR + F A+ G DGHD+I A+ GA Sbjct: 3 LSDILYNISLITVSGKTDIEIEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 V+ ++ + + V++ ++ A T++ +TG+ GKT+ Sbjct: 63 AVLCE--VLPKMLEEEVTYIQVENSAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSVAT 120 Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + + +P T + +S Sbjct: 121 LLFKLFRKLGYKCGLISTVQNQIEDEIIPATHTTPDSITLNALLHEMHQKGCAFVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ + + T I HL +E AK F+ L T N DD Sbjct: 181 SHSVVQGRISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDALPSTAFALTNVDDR 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 +++ + A +S+ ADF+ + + +Q++ EV IG Sbjct: 241 NGKVMLQNTKAEK----HSYSLKNIADFKG----KVLDCGLFGLQMEIDKQEVWFKLIGQ 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + + LS P GR ++ + T+ Y P Sbjct: 293 FNAYNLLAVYGAAVLLEENPENILTELSQLTPPPGRFEQ----VISSQQTVGIVDYAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++K + ++ + E V G L ++ V L+ + Sbjct: 349 DALKNVLETINGLRQGHERVITVV-----GCGGNRDKGKRPLMAGIACELSDTVILTSDN 403 Query: 411 V---------LALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ +P + V + D+++V K Sbjct: 404 PRFEEPEDILKDMEAGIPITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKG 457 >gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2866] Length = 488 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 154/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLLGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + +A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] Length = 512 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 94/477 (19%), Positives = 164/477 (34%), Gaps = 36/477 (7%) Query: 5 WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + DL++ I + G V+ IS DSR + P F A++G DGH FI AV+ Sbjct: 1 MSLADLIRQIPVLEAAGGSTTSLPVSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT 120 +GA V+ ++ + S+P V+D AL A +I +TG+ GKT Sbjct: 61 RGAAAVLCE-EIPPVLPDASLPYLRVEDARQALALAARQFYGFASDALHVIGVTGTNGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFE 166 TT ++T L++ IG+ G L R +D + Sbjct: 120 TTARLITAMLNACGIRTGYIGTNLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAV 179 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + + + H AV T ++ HL ++E A AK ++FE L G +N Sbjct: 180 MEVSSHALVLQRVYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQLSPQGFAVIN 239 Query: 227 YDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD E + +K + G+ + + + Sbjct: 240 SDDPRAEEMVSKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASATIRLCFPDAQQ 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N++ L ++ + + G R +++ + Sbjct: 300 TISTVLPGQYNVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFVFV 359 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ A+S L+ + R I V G G +++ N V Sbjct: 360 DYAHTPDALFKALSTLNALKS-PASRLIVVFG----CGGNRDRLKRPEMGRIAVENADLV 414 Query: 405 WLS-----GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + D + + I V + L GDV++V K Sbjct: 415 ILTSDNPRDEDPEMIIDEIEKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAGKG 471 >gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] Length = 483 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 85/477 (17%), Positives = 153/477 (32%), Gaps = 50/477 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + GI+ DSR + P F A++G DG +I A+++GA +V + A + + S+PV Sbjct: 20 EITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQAIVTD--CNAVLENFSVPV 77 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V DV +L A ++A+TG+ GKT+ L + + A IG+ Sbjct: 78 LRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVVSFLRQIWTHVGLCAASIGTVGI 137 Query: 146 HIGVPLTLARMPVDV----DFGIFEL----------GMSHLGEIRFLTHLVRPHIAVITT 191 ++E+ S G + VR A T Sbjct: 138 VSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEASSHGLDQSRLDGVRLTAAAFTN 197 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + H+ +E+ AK +F+ L L + D + + I + G Sbjct: 198 LGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFADDIYSQKVIDIVTKARRRILTIG 257 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + + + + +E +++ G N LM G+ Sbjct: 258 RKGKF-ITINRIEHQRLKQCVECRVENNIYTFDLPLAGNFQVTNALMAAGLAIATGVSPK 316 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +L + GR + N ID ++ VL + P +GR Sbjct: 317 KVFHSLEILQGAPGRLELVGKTENNA-PVYIDYAHKPEALE-----QVLLSVRPFTQGRL 370 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPRSIHVH 425 I V G G L ++ V ++ + KD L + Sbjct: 371 ILVFG----CGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEMPEKIRKDILQAAPRAI 426 Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KSSN-------------SCGFYRLINLLLEE 467 + L D +++ K + S ++I+ L E Sbjct: 427 EIADRGEAISYAVGLLKAEDTLIIAGKG-HENGQVIGKKTYPFSDRL-KVIDALQER 481 >gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] Length = 488 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGLRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTKLPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] Length = 485 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 153/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL ++ SI + G++IDSR I F AIKG DGH FI A++ G Sbjct: 1 MKLTDLLSEVKTLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFINKAIESG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +++ V S I V+ + K+A K ++ +TG+ GKTT Sbjct: 61 AKAILLED--VPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168 +L + A + P+ L ++ + E + Sbjct: 119 ATLLYNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKMVEAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+ L K N D Sbjct: 179 CSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSLPKKAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ A I ++ + ADF+ R + E + L EV I Sbjct: 239 DKNGMIMVQNCKA----NIKTYSIQRMADFRARIIECHFEG----MYLDIDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L D + LS GR + R Y Sbjct: 291 GKFNVSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIRSPEGFTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ +S + + G+ I V G G L ++ + V L+ Sbjct: 347 TPDALSNVLSAIHDVMEGKTGQIITVCGA----GGNRDKGKRPLMAQEAVKHSDVVILTS 402 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDV++V K Sbjct: 403 DNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAGKG 458 >gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Croceibacter atlanticus HTCC2559] gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Croceibacter atlanticus HTCC2559] Length = 486 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 65/476 (13%), Positives = 146/476 (30%), Gaps = 47/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D+L + + + + + DSR ++ + F A +G DGH++I +AV + Sbjct: 1 MITLKDILYRVSINKVIGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V + + V + AL +A ++ +TG+ GKTT Sbjct: 61 GAIAIVCEE--LPKDTVNGVTYVKVQNAQQALAFMASNFYENPSENLQLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167 +L + + + +G D+ + Sbjct: 119 IASLLYQLYTKAGFKVGLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTDIGCEYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T ++ + T ++ HL S E K + F+ L + N Sbjct: 179 EVSSHGIAQHRTTGLKFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDELPSSAFALTNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A ++ AD++ + + +++ G Sbjct: 239 DDKNGMVMLQNTKAKK----QTYALKSIADYKAQILENQFSGLLLKLNNNELW--SKLIG 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + + + S+ E R Y Sbjct: 293 NFNAYNLLAIFATTELLGMQTM-------ESLRLISELESVNGRFQYLIKNKITAIVDYA 345 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ I E V G+ + + + S+ + ++ S Sbjct: 346 HTPDALKNVLETINAIRTKNEELITVV----GCGGDRDATKRPKMGHIASVLSTKVIFTS 401 Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + +A+ + + + S + D++++ K Sbjct: 402 DNPRTEDPNKIIEAIESGVEPQHFKKTLSIADRKQAIKTACSFAKENDIILIAGKG 457 >gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] Length = 482 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+AIQ I + G++IDSR I F A++G DGH +I A++KG Sbjct: 1 MKLSDLLKAIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYIPAAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A ++ I V D A+ K A SK ++ +TG+ GKTT Sbjct: 61 AVAILCEE--WPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + VP D + Sbjct: 119 ATLLYDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K+ N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEMPKSAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DRNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPKGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + S V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITA 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQPGDVILVAGKG 457 >gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, murE [Flavobacteria bacterium BBFL7] gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, murE [Flavobacteria bacterium BBFL7] Length = 488 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 140/477 (29%), Gaps = 47/477 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + + V + DSR+I + F A+KG DGH FI AV Sbjct: 1 MRNLKDLLYKVSLELVIGPTDIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIEKAVAS 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V++ + + + VD+ AL + ++ +TG+ GKTT Sbjct: 61 GAVAVLLED--LPDYQAEHVTYIQVDNAHKALALIGANYYDNPSKDLKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYN---------NHIGVPLT-----LARMPVDVDFGIFEL 167 T +L + I + P D + Sbjct: 119 TTSLLYQLFKKLGFKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAAMRDAGVDYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + + + T + HL + E K F+ L N Sbjct: 179 EVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFFDMLPSDAFALTNR 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD E + + A + + D++ + + ++V Q +++ Sbjct: 239 DDKNGEFMLQNTKARKLG----YALKTYTDYRAQIIENQFGGLQLKVNNQELWTKMIGEF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 Y++ + + T ++A+S GR ++ Y Sbjct: 295 NAYNVLAIYGCAIELGLEST----EVLEAISQLDGVSGR---FQYFTTAAQHITAIVDYA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ I E V G + ++ + + Sbjct: 348 HTPDALKNVLETINAIRTRNEKLITVV-----GCGGDRDKSKRPVMANIAASLSDLIIFT 402 Query: 408 GFHVL-----ALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ + + + D++++ K Sbjct: 403 SDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKG 459 >gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 484 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 93/477 (19%), Positives = 169/477 (35%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L AI + V + DSR F A++G H DGH F+ A+++ Sbjct: 1 MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLFVEKAIEQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 G L++V + + V D AL A ++ +TG+ GKTT Sbjct: 61 GCTLIMVEE--MPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFEL 167 +L +++ + + N IG +P T R VD + Sbjct: 119 IATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ +R + + I HL + AK + F+ L++ N Sbjct: 179 EVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNG 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ ++ + A ++G ADF+ + + + + L + EV Sbjct: 239 DEKNGSVMLQNTFAHKK----TYGLKGVADFKAKIIESHFDG----MLLNIEGHEVWVKL 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G A N+L G +L + + ALS EGR + Y Sbjct: 291 VGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAITSKNGVIGIVD----YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ +S ++ + E + I VLG G+ ++ ++AEV + + V ++ Sbjct: 347 HTPDAVANVLSTINNLR-KKEQQIITVLG---CGGDRDKTKRPEMAEVAAKMS-DKVIIT 401 Query: 408 GFHVL------ALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD R +V GD+V+V K Sbjct: 402 SDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKG 458 >gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] Length = 483 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I +I + ++IDSR I F A++G DGH FI A+++G Sbjct: 1 MKLKELLKGIHPTTIIGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFIPKAIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ T + + V A K+A ++ +TG+ GKTT Sbjct: 61 ASAILCET--IPEQQKAGVTYIVVSSTEDAAGKVATIFYGNPSMRLKLVGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y VP + + Sbjct: 119 ATLLYNMFRKFGYKCGLLSTVCNYIEEEAVPADHTTPDPIALNQLLHRMAESGCEYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL + +AK F+ L K+ N D Sbjct: 179 CSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSLPKSSFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + A TI ++ ADF+ + + E ++E+ + ++ + Sbjct: 239 DKNGMYMVQNCKA----TIKTYSLRNMADFKAKILECHFEGMYLEIDGREVGVQFIGKFN 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ + + + L + + + ++ Sbjct: 295 VSNLLAVYGTAMMLGKQPEDILLAMST-LKSVSGRLEPIRSQEGVTAVVDYAHTPDALAN 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 ++ + G+G+ I V G G L + V ++ Sbjct: 354 VLNAIHEVLD--------GKGKVITVCGA----GGNRDKGKRPLMAQEAAKQSDRVIITS 401 Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ D + + GDV+++ K Sbjct: 402 DNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAGKG 457 >gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] Length = 477 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 67/464 (14%), Positives = 144/464 (31%), Gaps = 48/464 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 ++ ++ I DSR I + F AIKG +GHD+I A+ GA ++ + Sbjct: 4 EAVHGTTDIAISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIICEE--LP 61 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 S + V D AL L+ ++ +TG+ GKTT +L Sbjct: 62 SNIVNGVTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAG 121 Query: 135 K---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 Y P + + +S G + T Sbjct: 122 YKVGLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRTE 181 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ V T ++ HL + E K F+GL K N DD ++ + Sbjct: 182 ALQFVGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDGLSKDAFAITNIDDKNGAIMLQNTK 241 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + S+ AD++ + + +++ ++++ Y++ + + Sbjct: 242 AKKL----SYALKSYADYKAQILENQLSGLLLKINDNEVWVKLIGSFNAYNLLAIYGVAV 297 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++AL + E R++ ++ T I + Y P +++ + + Sbjct: 298 ELG-------IDKMEALRLLSELESVSGRFQFIVSDLKITAIVD-YAHTPDALENVLKTI 349 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415 I E V G + ++ + + + Sbjct: 350 EDIRTKNEQLITVV-----GCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETII 404 Query: 416 DALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + D++++ K Sbjct: 405 EEMEKGVEPQNFKKTVSILDRKQAIKTACQLANPNDIILIAGKG 448 >gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 485 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 94/477 (19%), Positives = 159/477 (33%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + LL+++ + + GI++DSR + P + F A+KG DGH +I AV+K Sbjct: 2 MMELDILLKSVSVVRVTGDTVRNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEK 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA VV + + + V D A+ +LA SK +I +TG+ GKTT Sbjct: 62 GAVAVVCEA--WPEVQAEGVTYVQVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTT 119 Query: 122 TKEMLTIALS---SIKKTYACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167 +L + + +Y + VP D + Sbjct: 120 IATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFM 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + ++ + T + HL E AK F+GL K N Sbjct: 180 EVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNV 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A + ++ ADF+ + ++ E + L EV Sbjct: 240 DDRNGMIMVQNTKA----VVKTYSLRAAADFKAKVLEESFEG----MCLDVNGKEVSVPF 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG N+L + + + ALS P GR + R Y Sbjct: 292 IGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETIRSKEGVTAIVD----YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ +S +++I G I V G G + ++ N V ++ Sbjct: 348 HTPDALVNVLSTVNEI-LKRRGEVITVCGA----GGNRDKGKRPIMAQEAVKNSDRVIIT 402 Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDVV+V K Sbjct: 403 SDNPRFEEPQEIINDMLAGLDKEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKG 459 >gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] Length = 482 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 154/446 (34%), Gaps = 50/446 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+++S+ + FFAIKG +DGH+FI A ++GA VVV + + +PV Sbjct: 23 VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVSSK-----VPVI 77 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+D AL K A + +I ITG+ GKTTT ++ L + IG+ Sbjct: 78 IVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIY 137 Query: 145 NH-------IGVPLTLARMPVDVDFGIFELGM-------SHLGEIRFLTHLVRPHIAVIT 190 G +ELG S ++ + R + T Sbjct: 138 YRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRFEAVLFT 197 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E+ ++KA++F E I D LLK I Sbjct: 198 NLSQDHLDYHKTMEDYFASKAKLFTEYESKVKIINADDTYGKRLLK-------ITHGEII 250 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 K D ++ ++ S + + +GK E + IG A N+ + + Sbjct: 251 TYGKKGDLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALWKGIEP 310 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D +AL + + F +ID ++ + +VL +G+ Sbjct: 311 DLIQRALKCVNVPGRF----EVVHSDKFTVIIDYAHTPDAVE-----NVLRTARKLSKGK 361 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421 I+V G G L + + L+ + + D + Sbjct: 362 LISVFGA----GGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEK 417 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVV 447 V +GD+V Sbjct: 418 DKVIIEADRRKAIKKAIDMAKEGDMV 443 >gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] Length = 483 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 94/477 (19%), Positives = 163/477 (34%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L DLL+ IQ I + G++IDSR I F A++G DGH +I A++K Sbjct: 2 LMKLSDLLKTIQPVHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYIPAAIEK 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA V+ + I V D A+ K+A A SK ++ +TG+ GKTT Sbjct: 62 GAIAVLCED--LPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTT 119 Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167 +L + + +Y + VP D + Sbjct: 120 IATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFM 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + ++ + T + HL +E AK + F+ + K+ N Sbjct: 180 EVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTNL 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + + +Y++ +DF+ + + E + L + E+ Sbjct: 240 DDKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRF 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N+L G +L + + ALS HP GR R Y Sbjct: 292 IGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPKGFTAIVD----YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ ++ + + G+G+ I V+G G + S V ++ Sbjct: 348 HTPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIIT 402 Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 403 SDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDVILVAGKG 459 >gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 500 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 158/475 (33%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL++ I + + I+ +S++ AF IKG DGH++I A+Q GA Sbjct: 17 LKDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGA 76 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 LVVV+ S I + AL ++ +I +TG+ GKT+T Sbjct: 77 RLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTT 136 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168 M+ L + + IG+ N IG + +M + + + Sbjct: 137 FMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKSEGVDSVV-ME 195 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S F + + V T + HL +E SAK ++F +K + Sbjct: 196 VSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSKKRVVNADDSW 255 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++ K +A+ + K ++ ++ K ++ + Sbjct: 256 GKRIIEM--------YPDCITYAKDSDANVCAQNIKLFVNKNQFDLYYNNKKENILLNIP 307 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +L ++DT K L GR + + + Sbjct: 308 GLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNQKFTVVIDYAHTPDG 367 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++++ ++ +GR++ + G G + ++ V ++ Sbjct: 368 -------LLNLMKTVNEVADGRKVLLFG----CGGDRDRTKRPIMGEIAGKMADFVIVTS 416 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + ++ + + + D +V+ K Sbjct: 417 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 471 >gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2846] Length = 488 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLLGQIVEAKNTTGSAVEIQSSLSTFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] Length = 483 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 85/454 (18%), Positives = 154/454 (33%), Gaps = 41/454 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + GIS DSR I P F A+KG DG +++ A+++GA ++V + + V + Sbjct: 17 ASIDITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIVTDHNFV--FENSL 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136 +PV V +V +L A ++A+TG+ GKT+ + + Sbjct: 75 VPVVRVLNVRHSLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWKYVGCCAASIGT 134 Query: 137 -----YACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAV 188 + P+ L R+ + + G+ L S G + VR A Sbjct: 135 VGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRIDGVRLAAAA 194 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + H+ IE+ AK +F L L + D + + + Sbjct: 195 FTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVRRAHRQVL 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G++ L + + + +E ++ +G N LM G+ A Sbjct: 255 TIGRTGKF-ITLNRVEHQRLKQCVECRMGNNIYTFDLPLVGDFQVANALMAAGLAIATRA 313 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D ++L GR + G +D ++ VL + P + Sbjct: 314 SPDMVFRSLEKLQGAPGRLELV-GKTEDGAPVYVDYAHKPEALE-----QVLLSVRPFTQ 367 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALP 419 GR I V G G L ++ V ++ + + A+P Sbjct: 368 GRLILVFG----CGGDRDQGKRALMGTIAGNKADIVIVTDDNPRTEAPEKIRKDILQAVP 423 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +I + + L GD ++V K Sbjct: 424 EAIEI---ADRAEAIYYAVRLLKTGDTLIVAGKG 454 >gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] Length = 487 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 77/473 (16%), Positives = 160/473 (33%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + + + I+ DSR + + F AIKG DGHD+I AV +GA Sbjct: 4 LKDILYKVTLDKVLGNTAVAIRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAI 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++ T I I V+D AL +A ++ +TG+ GKTT Sbjct: 64 AIICETIPSEIIN--GITYIQVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIAT 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMS 170 +L + + + +G R VD + +S Sbjct: 122 LLYNLFMAAGYETGLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVDAGVSYCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T + + T ++ HL +E K + F+ L KT +N DD Sbjct: 182 SHGIHQKRTEGLTFAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQLSKTAFALVNADDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ AD + + + + +++ Q ++++ Sbjct: 242 NGMVMLQNTSAKKV----TYALKSMADHKAQILENQLQGLLLKLDGQELWVKLI------ 291 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L I + I+ L + E R++ ++ T + + Y P Sbjct: 292 -GNFNAYNVLAIYATAELLGLETIETLQLISTLESVDGRFQYFISNTKVTAVVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++K + ++ I E V G+ + + ++ + + ++ S Sbjct: 350 DALKNVLETINTIRTGNEQLITVV----GCGGDRDVTKRPIMGKIAAQLSTKAIFTSDNP 405 Query: 409 --FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + + D++++ K Sbjct: 406 RTEQPEAIIEQIEAGVEPIDFKKTLSITDRKQAIKTACQLANENDIILIAGKG 458 >gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] Length = 486 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 93/476 (19%), Positives = 163/476 (34%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL+ ++ I + + GI+IDSR I F AIKG DGH +I A++ G Sbjct: 1 MKLNELLKNVKPIQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A ++V + S +I V A+ K+A K ++ +TG+ GKTT Sbjct: 61 ACAILVED--IPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + VP + V+ + Sbjct: 119 ATLLYNMFRKFGHKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKMVEEGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + ++ + T + HL E +AK F+ L K N D Sbjct: 179 CSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDDLGKDAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ A T+ ++ + ADF+ + E + L+ EV I Sbjct: 239 DKNGMIMVQNCKA----TVKTYSTKRAADFKAHLLECHFEG----MYLEVNGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + ALS GR + T I + Y Sbjct: 291 GKFNVSNLLAVYGAAVMLGKKPEDILVALSALKNVNGR---LEPITSLDGITAIID-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + + ++ G I V G G L + ++ +V L+ Sbjct: 347 TPDALENVLLAIHEVLEGKGGHIITVCGA----GGNRDKGKRPLMALEAVKKSDNVILTS 402 Query: 409 FHVL---------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L + V GDVV++ K Sbjct: 403 DNPRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKG 458 >gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] Length = 485 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 93/476 (19%), Positives = 154/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ ++ +I + GI+IDSR I F A+KG DGH FI A++ G Sbjct: 1 MKLTDLLKGVKTLNINGNADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+V + + + V + K+A K ++ +TG+ GKTT Sbjct: 61 AKAVLVED--MPTDLKEDVTYVQVASTETEVGKIATIFYGNPTKKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE---LG 168 +L I + N+I P+ L ++ ++ E + Sbjct: 119 ATLLYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + V T + HL E +AK F+ L K N D Sbjct: 179 CSSHAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSLSKNAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ A I ++ + ADF+ + + E + L+ EV I Sbjct: 239 DKNGMIMVQNCKA----NIKTYSMQRMADFRAKIIECHFEG----MYLEVDGKEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L D + ALS GR Y Sbjct: 291 GKFNVSNLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSPEGFTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + + + G+ I V G G L ++ V L+ Sbjct: 347 TPDALENVLGAIHDVLEGKNGKVITVCGA----GGNRDKGKRPLMAQEAVKQSDTVILTS 402 Query: 409 FHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 403 DNPRFEDPQAIIDDMVAGLDANQRKKVLTIVDRREAMRTAAMMAKKGDVILVAGKG 458 >gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] Length = 487 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 79/477 (16%), Positives = 153/477 (32%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L + + V+ + DSR + + F A++G DGH FI AV Sbjct: 1 MISLSKILNGVSIKQLIGSMDVTVHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVAL 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +VV + S I V++ AL +A K ++ +TG+ GKTT Sbjct: 61 GAKIVVCEQ--LPQDLSGHITYIQVENAGFALGLIAANFYDNPSAKLKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFEL 167 +L K + + P++L + V+ + Sbjct: 119 VATLLYKLFVELGFRVGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + + V T + HL + AK F+ L K+ +N Sbjct: 179 EVSSHAVAQHRITGLSFVGGVFTNLTHDHLDFHKTFDAYLKAKKAFFDMLPKSAFALVNI 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A ++G ADF+ R + M++ + + +V Sbjct: 239 DDKNGSVMLQNTDAYKK----TYGLKNIADFKGRIVESHFNGMLMQIDTREVWIRLVGAF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 Y++ + + ++ T V T + L+ + + + ++ Sbjct: 295 NAYNLLAVYSVAI-LLEQDTTRVLTILSRLTGAEGRFDTLVSGNGVIGIVDYAHTPDAVE 353 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++ QI IAVLG G ++ V L+ Sbjct: 354 NVLRTIVDLRKNKEQI--------IAVLG----CGGDRDKTKRPEMAAVAANLSDKVILT 401 Query: 408 GFH---------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ +P H GD+V++ K Sbjct: 402 SDNPRSEDPQQIIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKG 458 >gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 500 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 85/483 (17%), Positives = 158/483 (32%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I F + G DG H F+ AV Sbjct: 10 LKELANLLLIKETIGDMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYSYPSNEMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L L+ +G+ IG + D+ Sbjct: 123 TTTSYLLEKILTDYGFQTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL EE K G + + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSA 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 T + + + + ++G + AD Q + S+ V + Sbjct: 241 TDKKIAILNADDPSVEYFKKVTSAEVITYGINNGADVQAKSITLSSKGIQFLVSSFNGEI 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E+ + +G N L + + + +LS + R F + Sbjct: 301 EINLNLVGRFNVYNALAVITATLVEGIPLTNISDSLSH---VKSIEGRMEIIDENQDFLV 357 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 I + + S A +VLS IS + + I V G G + + ++ Sbjct: 358 IVDYAH----SPDALENVLSTISEFSKAKIITVFG----CGGDRDAKKRPIMGEIAGGYS 409 Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ ++ +++Y E + D+V++ Sbjct: 410 DFVYITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIQMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] Length = 482 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 164/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+AIQ I + + G++IDSR +A F A++G DGH +I A++KG Sbjct: 1 MKLSELLKAIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + + + V D A+ K+A SK ++ +TG+ GKTT Sbjct: 61 AIAVLCED--MPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + VP D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K N D Sbjct: 179 VSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSIRSPKGITAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + S V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKG 457 >gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 216 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 5/210 (2%) Query: 38 APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97 P F A+KG +D HDF A GAG ++V+ + + +P V D A + Sbjct: 2 TPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQ 56 Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 LA R++ A ++A+TGS GKT+ KEM LS T ++NN IGVP+TL R+ Sbjct: 57 LAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLN 116 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D D+ + ELG +H GEI + L RP A++ +A AHL F + +A AK EI+ GL Sbjct: 117 HDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL 176 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + G +N D++ + ++ + Sbjct: 177 PENGIAIMNADNNDWLNWQSIIGDRQVWRF 206 >gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli 8C-3] Length = 216 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 120/211 (56%), Positives = 154/211 (72%) Query: 43 FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102 FFAIKG DGHD+ A+ GA L+VV+ + ++G L++P+ VDDVL AL +L A+ Sbjct: 3 FFAIKGDRVDGHDYASMAMANGASLLVVSEARLPAMGRLTVPMIVVDDVLAALGRLGQAS 62 Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 R RS+A IIA+TGSVGKTTTKEML LS K +A + S+NNH GVPLTLARMP D D+ Sbjct: 63 RERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDY 122 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 G+FE+GM+H GEIR L ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE G Sbjct: 123 GVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGH 182 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 + LN D+ F L + +LG++ I+SFG+ Sbjct: 183 VVLNRDNDQFNFLDRTAQSLGVEHIHSFGQH 213 >gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] Length = 492 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 76/466 (16%), Positives = 144/466 (30%), Gaps = 51/466 (10%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + G++ DSR + P F + G DGH F AV+ GA V+ D+ Sbjct: 15 VSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVLSEQDL---- 70 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + + V D A+ LA + +I +TG+ GKTTT ++ L K Sbjct: 71 -DVPATIVKVPDTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTHLIDKILRDQSKQ 129 Query: 137 YACIGSYNNHIG---------------VPLTLARMPV-DVDFGIFELGMSHLGEIRFLTH 180 IG+ + IG + + RM + D+ I E+ SH E+ + Sbjct: 130 TGLIGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEV-SSHALELGRVRG 188 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 H AV T + HL +E A + G + + Sbjct: 189 C-EIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASEL 247 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + ++G + AD + ++ + S+ + V+ S + +G N L Sbjct: 248 YATVTPARVITYGIDQPADVRAKQIEITSKGTSFTVESFAGSARLNLRLMGKFNVYNALA 307 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + ++ +L GR + + ++ + Sbjct: 308 AIAVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAGQPFAVLVDYSHTPDS-------LEN 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413 L + G ++G G + ++ L+ A Sbjct: 361 ALMTVKEFARGNVFCIVG----CGGDRDRTKRPIMAQIATKYADLTVLTSDNPRSEEPQA 416 Query: 414 LKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + S DV+++ K Sbjct: 417 ILDDMLAGLSEVAPDRYTALTDRREAIAHAVSLAKPDDVILIAGKG 462 >gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] Length = 487 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 148/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + + V G+ DSR + Q F A KG +GH FI A++KGA Sbjct: 4 LKDILYGVSIDQLQGSTLKEVQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEKGAT 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 +VV + + + V + AL +A +I +TG+ GKTT Sbjct: 64 VVVCED--LPGLTHAEVTYVVVPNSQEALGVMAANWFDHPSKKLSLIGVTGTNGKTTVTS 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMS 170 +L + I + +G + I + +S Sbjct: 122 LLYALFTKAGYPSGLISTIKILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + + A+ T ++ HL K +F+GL T +N DD Sbjct: 182 SHGIAQMRIKGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDGLSTTAFALVNSDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + A S+G ADF+ + + +++ Q ++ Y Sbjct: 242 NGLFMLQNTKAKK----MSYGLKGVADFKAQILENQFSGQLLKIDQQEVWTTLLGQFNAY 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ + ++ L E R++ +++ T I + Y P Sbjct: 298 NILAIYATATLLGL-------NTLEVLQHISTLENVAGRFQYFISKNQITAIVD-YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ + + QI E V G L ++ V L+ + Sbjct: 350 DALDNILETIGQIRTKNEKLITVV-----GCGGDRDQGKRPLMGAIAAEKSDTVILTSDN 404 Query: 411 VL-----ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + V E D++++ K Sbjct: 405 PRSETPIAILEQMEAGVSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKG 458 >gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] Length = 488 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 151/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ +PV + L+ LA T++ TG Sbjct: 54 HSGASAVVSETELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLATFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 498 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 84/467 (17%), Positives = 150/467 (32%), Gaps = 48/467 (10%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + V I+ DSR + P F A++G DGH F AV++GA V+V + Sbjct: 15 VTNAENPDVLNITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEEPVAD-- 72 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136 SIP V D +A +I +TG+ GKTT ++ L S + Sbjct: 73 VPASIPQVVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRK 132 Query: 137 YACIGSYNNHIG-----VPLTLARMPVDVD-----------FGIFELGMSHLGEIRFLTH 180 IG+ +G +P T + E+ S + Sbjct: 133 AGLIGTVGAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEV--SSHALVERRAA 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASA----KAEIFEGLEKTGTIFLNYDDSFFELLK 236 V A T + HL +E A+A + + G + + + Sbjct: 191 GVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWS 250 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 I ++G + AD + R + + + V + E+ IG N Sbjct: 251 PVMAEASAAPILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFNVYNT 310 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + I + + + + GR +R F Y P ++ Sbjct: 311 LAAVAIALVEGLAASEIQEGIRSYPSVPGRMERIDEGQPFSVFVD----YAHTPDGLENV 366 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVL 412 ++ + + +P VL + G+ ++ +AEV ++ S + Sbjct: 367 LASVREFAPAR------VLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPV 420 Query: 413 ALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + Y+ + GDVVV+ K Sbjct: 421 AILAEMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKG 467 >gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] Length = 489 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 146/474 (30%), Gaps = 44/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + IG + + DSR + F + G ++ HDFI ++KG Sbjct: 1 MKLEKLLNGFEYEIIGNK-DVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A +V++ D+ G + V D AL L+ A + ++ ITG+ GKT++ Sbjct: 60 AHAIVISQDVSLKEG---MTYIRVKDTRIALALLSCAYFNYPSKELKVVGITGTKGKTSS 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELG 168 M+ L K IG+ IG + R V+ D + Sbjct: 117 SLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKMVEHDCEYCVME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V T I+P H+ AE + Sbjct: 177 VSSQALKMNRVAGIEFDYGVFTNISPDHIGP-----NEHKDFAEYMACKKHLFDFCQVGL 231 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + ++ K++D + + +E + + K + Sbjct: 232 FNKDDEHFEEFTKDVPCKVLTYSIEKDSDLKALHIELYNENGELGITFDTKGLINASFKA 291 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L + I + G+ ++ + LID ++N Sbjct: 292 SMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVHVLGRGQVMHVSPDYSVLIDYAHNG 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + + + + I V G G+ S++ + EV++ + + + Sbjct: 352 VSFESIIST-----VEQYNPNKLIVVYGS---GGKRSKTRRYESGEVVAKHGGYSILTAD 403 Query: 408 ---GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G ++ + + GDVV++ K Sbjct: 404 NPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGKG 457 >gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae Rd KW20] gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae Rd KW20] gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] Length = 488 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L+ +L ++ + +DSR + + F AIKG DG+ FI A+ Sbjct: 5 TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 GA VV T++ + ++ ++PV + L+ LA T++ +TG Sbjct: 54 HSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTG 113 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169 + GKTT ++L + A +G+ N G+ + + Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSAFKH 171 Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 S G + + A+ T + HL +E A+AK +F L+ Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D+ ++ L A+ + F + + + + + + Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + IG N+L+ + + ++ + GR + + Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A ++ AA H +G + G G L ++ Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 + ++ + + V F S V+ DV+++ Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460 Query: 450 -KS 451 K Sbjct: 461 GKG 463 >gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 498 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 149/465 (32%), Gaps = 44/465 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + V I+ DSR + P F A++G DGH F AV++GA V+V + Sbjct: 15 VTNAENPDVVNITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMVEEPVAE-- 72 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136 SIP V D +A +I +TG+ GKTT ++ L S + Sbjct: 73 VPASIPQVVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRK 132 Query: 137 YACIGSYNNHIG-----VPLTLARMPVDVDFGIFE---------LGMSHLGEIRFLTHLV 182 IG+ +G +P T + + +S + V Sbjct: 133 AGLIGTVGAKLGQASWPLPNTTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERRAAGV 192 Query: 183 RPHIAVITTIAPAHLSNFSGIE----EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 A T + HL +E A + + G + + + + Sbjct: 193 SFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWSSV 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 I ++G + D + R + + + V + E+ IG N L Sbjct: 253 MAEASAAPILTYGIERAGDVRARDVRLSASGARFFVDSPAGAFEIETPLIGRFNVYNTLA 312 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + I + + + + GR F++ + Y P ++ ++ Sbjct: 313 AVAIALVEGLTPTEIQEGIRSYPSVPGR---MERIDEGQPFSVFVD-YAHTPDGLENVLA 368 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414 + + +P VL + G+ ++ +AEV ++ S +A+ Sbjct: 369 SVREFAPAR------VLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAI 422 Query: 415 KDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + Y+ + GDVVV+ K Sbjct: 423 LADMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKG 467 >gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 499 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 82/483 (16%), Positives = 156/483 (32%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I F + G DG H F+ AV Sbjct: 10 LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L LS +G+ +G + D+ Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL +E K+ G + + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLST 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + ++G AD Q + + V + Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEI 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV + +G N L + + + + +LS EGR + + Sbjct: 301 EVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVD 360 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409 Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ +++ + + D+V++ Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halanaerobium praevalens DSM 2228] Length = 486 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 155/476 (32%), Gaps = 48/476 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + +L+ I + ++ I DSR+I F AI G DGH +I A++ GA Sbjct: 3 LNKILKNINYEIKAGNIKKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +++ ++ + I V++ ++ LA + +I ITG+ GKTTT Sbjct: 63 AIIIEKEL--EVYEKDITYLKVENSRQVMSILAKNFFDNPLKEIKLIGITGTNGKTTTAY 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 +L L A G+ +N IG + +G+ E+ Sbjct: 121 LLYKILQKYAGQAALFGTISNIIGSETLSSNRTTPESLDLYRYFAQMKKKGIKYGVMEV- 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + A+ T ++P HL ++ K+ +F L+ +N D Sbjct: 180 -SSHALDLYRVESIDFEAAIFTNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKYAIINAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E +K KS A + +K+AD ++K + + + Sbjct: 239 DPNSEYIKKKSEAQNL---SYSLDTKSADLYTTEFKLKQTGLEYKTGGK-LVANFKLNLG 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L + +L + + KAL+ F GR + Sbjct: 295 GLFNIYNSLAVVLTALVLGIEKNIIKKALADFDSVPGRFEIIDQGQKFQLIVDYA----- 349 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A+ + + + + + ++ +L G L L+ + +S Sbjct: 350 ---HTPDAMENILKAALNIKKNKLIIL---FGCGGDRDRSKRPLMAALAEKYADSIIISN 403 Query: 409 FH---------VLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + ++ + + D+V++ Sbjct: 404 DNPRSESPTKIFKEIEKGFSSNFTNYSIIPDRKKGIKAAIELAKKDDLVLLLG-RG 458 >gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelagibaca bermudensis HTCC2601] gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. HTCC2601] Length = 494 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 158/469 (33%), Gaps = 38/469 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + DL G + V GIS+DSR++ P F A+ G G FI A+ +GA Sbjct: 7 SLSDL-----GLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGA 61 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + + + + + + AL AT++A+TG+ GKT+ Sbjct: 62 VAVLTDAEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTS 121 Query: 122 TKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168 + + + P+TL + + E + Sbjct: 122 VASFVRRLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAME 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V+ A T HL + EE +AKA +F + + Sbjct: 182 ASSHGLDQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNI 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + G+S+ AD +L + + + + G ++ + I Sbjct: 242 DDARGIDMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLI 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G QN L+ G+V A+ + +AL GR + + G +D ++ Sbjct: 302 GGFQGQNALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATR-DSGAAVYVDYAHTP 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + + + PH GR IA++G G + L + N V ++ Sbjct: 361 DAVAT-----AIKALRPHVMGRLIAIVGA----GGDRDAGKRPLMGRAAAENADLVIVTD 411 Query: 409 FH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + L + L L GD ++V Sbjct: 412 DNPRSEDPAAIRAQVLEGAPEATEVGDRAEAILRGVDLLQPGDALLVCG 460 >gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 499 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 79/461 (17%), Positives = 146/461 (31%), Gaps = 42/461 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 +G + ++ I DSR + F + G H DGH F + AV+ GA ++ + Sbjct: 20 IVGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVAAVKSGAAALLCEH--IPD 77 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135 +P+ D AL +A + +++ +TG+ GK+TT M+ + K Sbjct: 78 GVKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGVTGTNGKSTTTYMIRSIMRGRGK 137 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLV 182 + + R + + S G + Sbjct: 138 VGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRSSCNGCVMETSSHGLAQGRLSGC 197 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +AV T + P HL +E K + ++ N DD + + L + Sbjct: 198 LFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKYNCKKIFNVDDPYGKRLLREC-- 255 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + KS +A + ++ ++G+ V IG + N L Sbjct: 256 SGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVNRVRLPLIGRYNVSNALAAAA 315 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D + L GR +RY + +A ++LS Sbjct: 316 ACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAIVDYAHTPDA-------LSNLLS 368 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 +GR I V G +G + ++ H+ L+ G L++ + Sbjct: 369 AAREICKGRLIGVFG----LGGERFRGNRWAMGEIAAQKADHLVLTMDNPRGEDPLSIVE 424 Query: 417 ALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + +H +GDVVV+ Sbjct: 425 DILEGVHKVDGNSYDVIIDRKDAIYRALDMSREGDVVVISG 465 >gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 82/476 (17%), Positives = 149/476 (31%), Gaps = 44/476 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + + G + + G++ DSR + F A+KG DG F+ A Sbjct: 1 MT--MKLKEIA-LFKELASGNAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA +V D V I +PV VDD AL A + ++A+TG+ GKT Sbjct: 58 VKRGASAIVAGKDTV--IADAGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFE-- 166 + + A IG+ + D G+ Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + V+ T + H+ + IEE AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ + + E+ V+++ Sbjct: 236 FSDDHFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGDEIFEIE 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 Q + + V A ++ K G+ + + Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL+ + P GR I V G G + ++ + Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVAIV 404 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + A P + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAAPGATEI---GDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] Length = 509 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 80/484 (16%), Positives = 156/484 (32%), Gaps = 49/484 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+AI + + +S DSR I + F + G DG +F A+++GA Sbjct: 5 LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGAC 64 Query: 67 LVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122 +++ ++ + V + V + KLA + + I I ITG+ GKTTT Sbjct: 65 AAIISKKASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTT 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 ++ +S+ A G+ N P F + Sbjct: 125 SFLIEFLTTSLGHPSALFGTLINRW--PNHEETSKYTTTFAVPLQAKLRKAVQAGVEYGA 182 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTI 223 + +S + + AV T ++ HL +E AKA +F Sbjct: 183 MEVSSHALSQNRVAGCDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGGPRS 242 Query: 224 FLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + L + + + + AD + + + ++ Sbjct: 243 VINIDDKWGAKLAKELNKKCWTCSLKENSQTREKADLYISNLQIMQDGYKGKLHTPFGVE 302 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGF 338 + IG NML +GI+ ++ + AL+ F GR + + +G+ Sbjct: 303 NFISPLIGEFNLMNMLQAVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVKEGY 362 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +I + + + L + R I V G G ++ Sbjct: 363 PLVIVDYAHTPDG----LQNALIASRSLTKRRLICVFG----CGGDRDKGKRSKMGEVAA 414 Query: 399 YNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ ++ + + + + + + DVV++ Sbjct: 415 KFADYIVVTSDNPRQEDPIEIIKDIGKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLI 474 Query: 450 --KS 451 K Sbjct: 475 AGKG 478 >gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] Length = 520 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 87/476 (18%), Positives = 152/476 (31%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ ++ +I + G++IDSR I F A++G DGH FI AV +G Sbjct: 37 MKLSELLRNVKPIAIHGNADVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQG 96 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V++ + ++ + V K+A ++ +TG+ GKTT Sbjct: 97 AVAVLLED--MPAVMDEKVTYVQVASTEEDAGKVATVFYGNPSRRLKLVGVTGTNGKTTV 154 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + VP VD + Sbjct: 155 ATLLYNMFRKFGYKTGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRMVDAGCEYAFME 214 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + + T + HL E +AK F+GL K N D Sbjct: 215 CSSHAIHQRRISGLEFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNAD 274 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ + ADF+ + + E + L+ + EV I Sbjct: 275 DKNGLFMVQNTKAAVK----TYSIKRMADFRAKILECHFEG----MYLEIEGKEVGVQFI 326 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + A+S GR + + Y Sbjct: 327 GKFNVSNLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVD----YAH 382 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ ++ + + G I V G G L ++ V L+ Sbjct: 383 TPDALANVLAAIHDVLDTKGGHVITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 438 Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + V GDV++V K Sbjct: 439 DNPRDEDPQAIIDDMLSGLDAAQRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 494 >gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] Length = 489 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 151/477 (31%), Gaps = 46/477 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL I + + + +DSR ++ FF I+G DGHD+ A + Sbjct: 1 MMKIRELLDHISPCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA + ++ + V D A+ +LA T+I +TG+ GKT+ Sbjct: 61 GAVAFLTEEEL-----PVDGTQLIVRDSRRAMAQLAARFYNYPSDRMTMIGVTGTNGKTS 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFE 166 + L IG+ + L M + + Sbjct: 116 VTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEMYLAGAEAVTM 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIF 224 SH + + +AV T ++ HL +++ A AK+ G + Sbjct: 176 EVSSHALHLGRVHGTA-FDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDAY 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + ++G K D + + E ++L +S V Sbjct: 235 KRAVINVDDSYADIMLGASAVPVITYGIEKPCDVRAEDLEVSPEGIRFTIRLNQQSYPVQ 294 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N L V + + + A A + + RG+ R + F ++D Sbjct: 295 LKLAGTFSVYNALAAFAAVYAIGIEPEQA--ARFLSELPQVRGRFERVETDAPFHVIVDY 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ + +V+ + V G G L L+ HV Sbjct: 353 AHTPDGLE-----NVIRTAKETTDRPVTVVFG----CGGDRDRKKRPLMGKLAEDLADHV 403 Query: 405 WLSGFHVLA------LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + + ++D L + + +G+V+V+ K Sbjct: 404 ILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKG 460 >gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 483 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 149/474 (31%), Gaps = 51/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGA 65 LL + + V+ + DSR I F AI+G DGH FI A+ GA Sbjct: 3 LSKLLTGLNYVCVKGNEHQEVDHMIYDSR-IKTNAGLFIAIEGFKTDGHQFIEAAIANGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTK 123 ++V D+ + + V+D A+ +A A ++ +TG+ GKT+ Sbjct: 62 KAILVQKDVEIKE---DVTIIKVEDTRLAMALVANNAYGHPSKQFELVGVTGTNGKTSIT 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169 +L L + K IG+ N IG L + V+ + + Sbjct: 119 FLLGQILEAYHKKIGIIGTIENRIGSQILKAERTTPESLDLQALFKKMVESQVDTTLMEV 178 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + T + HL +E A+AKA++ T+ Sbjct: 179 SSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKL-------FTMCETGIV 231 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + ++ K+AD++ + + + +V G Sbjct: 232 NKDSDYINEIIKGATCNLVTYAIDKDADYKATNVIITAAGVEYTLVCDQGTFKVDVPIPG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L + L + + L + GR + ++ + + Sbjct: 292 KFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFKSIKGYSVLVDYAHTPDG- 350 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +VLS I +G I V G G + ++ HV+++ Sbjct: 351 ------LENVLSTIKEFAQGHIITVFG----CGGDRDKTKRPIMGKIAATYSDHVFITSD 400 Query: 410 HVL-----ALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + E S DVV++ K Sbjct: 401 NPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKG 454 >gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL1A] gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. NATL1A] Length = 509 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 79/484 (16%), Positives = 158/484 (32%), Gaps = 49/484 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+AI + + +S DSR I + F + G DG F A+++GA Sbjct: 5 LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGAC 64 Query: 67 LVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122 +++ ++ + V + V + KLA + + I I ITG+ GKTTT Sbjct: 65 AAIISKKASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTT 124 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 ++ +S+ A G+ N P F + Sbjct: 125 SFLIEFLTTSLGHPSALFGTLINRW--PNYEETSKYTTTFAVPLQAKLRKAVQAGVEYGA 182 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223 + +S + + A+ T ++ HL +E AKA +F + Sbjct: 183 MEVSSHALSQNRVAGCDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDGPRS 242 Query: 224 FLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + +L + + + + D + + + ++ Sbjct: 243 VINIDDKWGSILAKELNKKCWTCSLKENSQIREKPDLYISNLQIMQDGYMGKLHTPFGVG 302 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGF 338 + IG NML +GI+ ++ ++AL+ F GR + + G+ Sbjct: 303 NFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVKDGY 362 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +I + + + L + R I V G G ++ Sbjct: 363 PLVIVDYAHTPDG----LQNALIASRSLTKKRLICVFG----CGGDRDKGKRSKMGEVAA 414 Query: 399 YNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ ++ + + ++ + + F + DVV++ Sbjct: 415 KFADYIVVTSDNPRQEDPIEIIKDIQKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLI 474 Query: 450 --KS 451 K Sbjct: 475 AGKG 478 >gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 492 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 89/479 (18%), Positives = 157/479 (32%), Gaps = 48/479 (10%) Query: 5 WTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +L++ ++ + V GI DSR + P F AIKG DGHDFI + Sbjct: 1 MKIAELVEILKTIITKNGINWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVI 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 +K L+V + G + V D AL LA K ++I +TG+ GK Sbjct: 61 EKKPALIVAEEERP---GIFGVNHLLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE---- 166 TT ++T L S IG+ N IG P L+ + + E Sbjct: 118 TTVTHLVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHV 177 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S ++ + V T + HL +E +AK E+F+ L Sbjct: 178 AMEVSSHALVQKRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFK--ILAEQKAL 235 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + + ++G + AD + + + + + Q + V Sbjct: 236 PGVINKDDFYGQRILKEVAHPFVTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKV 295 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L +G + L + +K L + +P GR + + + Sbjct: 296 KLLGLFNVYNILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELIDEGQDFAVIVDYAHT 355 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + ++L GR IAV G G +S Sbjct: 356 PDG-------LENILKSARAITPGRVIAVFG----CGGDRDKTKRPKMGKISATLADITI 404 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + ++ ++ Y + GD VV+ K Sbjct: 405 ITSDNPRTEDPEAIINEIEKGFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKG 463 >gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 486 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 162/474 (34%), Gaps = 44/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L + + +N I+ DSR + + F +KG DGH + AV G Sbjct: 1 MNLKSILNGLDYELLQGTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V+ D+ +I I + D AL + K II ITG+ GKTTT Sbjct: 61 AKVIVIQDDV--NIDDKEITIVKCSDTRKALALMGANYYGNPSEKMKIIGITGTNGKTTT 118 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPL-------TLARMPVDVDFGIFE 166 M+ L Y C + P + V++ + E Sbjct: 119 AFMIKDILECAGKKVGLIGTIANYICGEKIHTERTTPESLELQELFGEMVEKGVEYCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + V+ + T + HL E AK ++F E++ +N Sbjct: 179 V--SSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLF---ERSCIKVIN 233 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ + L + IYSF ++D++ + + + + E + Sbjct: 234 VDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYD-ELMGSRDIKFKVVLDEEEEFILG 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L +G+ + ++ + + GR +R N + +ID ++ Sbjct: 293 IPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENAL-VPGRCERVGKEYNLPYEIIIDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++L +G+ IA+ G G+ + + ++ V Sbjct: 352 TPDGLE-----NILKTAKAFTKGKLIAIFG---CGGDRDKVKRPQMGKIGIDIADLAVIT 403 Query: 407 SG----FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S +A+ + + + E DV+V+ K Sbjct: 404 SDNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKG 457 >gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 486 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 74/460 (16%), Positives = 152/460 (33%), Gaps = 49/460 (10%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + I+ +S++ F IKG DGH++I A+Q GA LVVV+ S Sbjct: 18 GDFDKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQNGACLVVVDEFFDTSKIE 77 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I + AL ++ +I +TG+ GKT+T M+ L + + Sbjct: 78 GKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVG 137 Query: 139 CIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 IG+ N IG + +M + + + +S F + Sbjct: 138 LIGTIKNMIGSREIEAQHTTPESYDLQKLFWQMKSEGVDSVV-MEVSSHSLELFRVYDCD 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + V T + HL +E +AK ++F + +N DD + + + Sbjct: 197 FDVGVFTNLTQDHLDFHGTMENYFAAKLKLF---GMSKKRVVNADDMWGKRIIEMYPDS- 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 ++ K +A R K ++ E+ G+ E+ + G N L Sbjct: 253 ----VTYAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSLAASACC 308 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D K L GR + + + ++++ + Sbjct: 309 ISLGIKLDDIKKGLENLKAVPGRFEIVESNQKFTVVIDYAHTPDG-------LLNLMKTV 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 + +GR++ + G G + ++ V ++ + + Sbjct: 362 NEVTDGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADI 417 Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + ++ + + + D +V+ K Sbjct: 418 LEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 457 >gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 485 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 160/478 (33%), Gaps = 57/478 (11%) Query: 8 HDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++LL+ ++G + + +DSR + FF I G DGHDF AV+KGA Sbjct: 2 NELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + +L +PV V D A+ +LA + +I +TG+ GKT+ Sbjct: 62 VAVVAERPL-----ALDVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGKTSVT 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFEL 167 +L + IG+ IG R + V+ + E+ Sbjct: 117 HILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAVMEV 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224 L R IAV T + P H+ +E AK T Sbjct: 177 SSHALHLGRVRGCDYD--IAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTAV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N DD + L + A + ++G K AD K + + + + G+ +V Sbjct: 235 INSDDPASDRLIQMTTADVV----TYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDVQ 290 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N L + + T +L GR + FT+I + Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGR---FEPVDEGQDFTVIVD 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + + + + V+G G + + +++ Sbjct: 348 -YAHTPDSLENVLQTVQDFA---DNDIHVVVG----CGGDRDATKRPVMGRIAVQYADRT 399 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + L + ++ GD+VV+ K Sbjct: 400 IFTSDNPRTEDPDAILADITEGLDPDQYTVIV-DRKTAIEQAIAAANTGDIVVIAGKG 456 >gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 489 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 87/472 (18%), Positives = 154/472 (32%), Gaps = 41/472 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL + + + I+IDSRS+ P F IKG DGHD+ AV GA Sbjct: 3 AEELLSTLMQKKVVGQLPKLITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 ++V I V + L LA I I +TG+ GKT+ Sbjct: 63 VIVTER---LLQLDGEIAQVIVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSG 119 Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFE----------LGMS 170 ++ L + + A N GV A D IF + +S Sbjct: 120 IIHNILIGLGEKSALSGTIGFNLNGVLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G V +AV T + HL +E + K +F L + + + Sbjct: 180 SHGLALGRLAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLN 239 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + I+++G NA F+ + + +++ + V H +G Sbjct: 240 ADDPWSERYAGMTPYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGE 299 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L + ++ I+ + + P +GR ++ L F Y P Sbjct: 300 FNIYNVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSDLPIQIFID----YAHTP 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +++ AI+ V G ++ +AE S+ +V L+ Sbjct: 356 DAIEKAINAAMPYKKPENKLIFLVGTG----GGRDKTKRPTMAEKASVA--DYVILTTDD 409 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + + S GD+++ K Sbjct: 410 PRYEEFDSITGDLAKGM-KHKNYACIGDRAEAVRHAVSVANPGDIIIFAGKG 460 >gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] Length = 504 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 93/478 (19%), Positives = 155/478 (32%), Gaps = 47/478 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL A++ + + IS DSR ++ FFA KG DGH +I A++K A Sbjct: 14 LKNLLYALEPLEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIGEAIEKRAR 73 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V + ++ S ++ V D L K A +++ +TG+ GKTTT Sbjct: 74 AIVCS-EIPRLYVSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSLVGVTGTNGKTTTSF 132 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168 + L IG+ + + E+ Sbjct: 133 LTRYLLEKQNWKAGLIGTVCYDTTESCIPSSRTCPEGSDLQYMLYRMVQAGCRAAVVEV- 191 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS----AKAEIFEGLEKTGTIF 224 SH + + + T HL +EE A I G E G + Sbjct: 192 SSHALDQGR-IEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIAYIRGGKEGDGGVV 250 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 LN DD + LL K S K AD + + ++ GK +V Sbjct: 251 LNLDDPQWRLLAEKLRKKMRIVTVSSEGRKEADLKAGSISCDRFSTKFVLEWAGKVFKVK 310 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +GY N L++LG V +L ++ +I L F GR ++Y Sbjct: 311 SSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKYYSKDGLLVVIDYA- 369 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 S A +L + R I V+G G ++ N V Sbjct: 370 ------HSEDALSKLLHTLKCFQPKRLILVVG----CGGDRDRLKRPRMAKVASENADIV 419 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + ++ + S +H+ + D+V + K Sbjct: 420 FFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAGKG 477 >gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 455 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 105/470 (22%), Positives = 190/470 (40%), Gaps = 21/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L ++L I+G I + ++ +I + +F ++ D + F Sbjct: 1 MKNL-NLKEMLSIIEGKIIRGTDELLIDHAAIVPHKLKDNSLYFNMQDDPVDFNSF---- 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 K +V+ + ++ + V V+DV A + R ++A+TG+ GKT Sbjct: 56 --KNCAMVINSEHY--NVENSKWTVVAVEDVEKAFWRFVKYYRNLFNIPVVAVTGTCGKT 111 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEM+ LS KT A S N L + + +FE +++ ++ Sbjct: 112 TTKEMIKHILSLHFKTAATYKSINGWRMHLPYLLEIDETTEAAVFETAVAYPEDLIESCR 171 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +P I +IT I HLS S + +AKAE+ EGL GT+ LN DD + + + Sbjct: 172 YFKPDIGIITNIGVDHLSGCSTFDNYLNAKAEMMEGLGYRGTLILNADDKNISRIDLQPY 231 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I FG SK + F+ + + ++ + ++ G G H N L + Sbjct: 232 KG---RIIYFGLSKKSHFRASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAI 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +L + A L+ + + + T+ID+++++NP SM+AA+ L Sbjct: 289 ACTHVLGLGIKEAALRLASYK---HLERHLQVVPGVNGSTIIDDTWSSNPTSMQAALKTL 345 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418 +S + A+LGDM + + H ++ + + + G + Sbjct: 346 QNLSGNKRK--AAILGDMFYLYSWEKELHREIGNLAVEIGLDILLTVGDAASEIARGALE 403 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 S ++ D + I L D +V+VK S F L+N ++ Sbjct: 404 KGMNSENIFICADADEAYQVICPLLDDNTIVLVKKSMKVSFNNLVNKIMN 453 >gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 497 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 140/470 (29%), Gaps = 50/470 (10%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + P + + DSR + P F A+ G + DGHDF AVQ+GA +VV + Sbjct: 10 GQLLQGDPAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVA 69 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI 133 A + V D AL +LA ++ +TG+ GKTTT ++ L Sbjct: 70 A---PAHVAVIRTDSTRAALGRLAAEFWRHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQ 126 Query: 134 KK-------TYACIGSYNNHIGVPLT---------LARMPVDVDFGIFELGMSHLGEIRF 177 + + G+ + + E S G Sbjct: 127 GHVVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAVME--ASSQGLDMN 184 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 V + + T + HL AKA++F L + G + + Sbjct: 185 RVDDVEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPAS 244 Query: 238 KSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + + Y++G +A + + + + + + V +G N Sbjct: 245 EYYRSVTEVPVYTYGFRPDAMVRAADVELSPAGTRLRLCTPQGEVPVSLRLVGRFNVYNA 304 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L +D AL GR + R G F S + Sbjct: 305 LAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQPFGVFVDYA-------HSPDSL 357 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413 +VL GR I V G G + ++ H ++ + + Sbjct: 358 ENVLHTARGFTRGRLIVVFG----CGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDP 413 Query: 414 ----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L D L + + DV+V+ K Sbjct: 414 VRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKG 463 >gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 484 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 95/477 (19%), Positives = 171/477 (35%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L AI + V + DSR F A++G H DGH F+ A+Q+ Sbjct: 1 MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLFVEKAIQQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 G L++V + + S + V D AL A ++ +TG+ GKTT Sbjct: 61 GCTLIMVEE--MPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFEL 167 +L +++ + + N IG +P T R VD + Sbjct: 119 IATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ +R + + I HL + AK + F+ L++ N Sbjct: 179 EVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNG 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D+ ++ + A ++G ADF+ + + + + L + EV Sbjct: 239 DEKNGSVMLQNTFAHKK----TYGLKGVADFKAKIIESHFDG----MLLNIEGHEVWVKL 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G A N+L G +L + + ALS EGR + Y Sbjct: 291 VGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAITSKNGVIGIVD----YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ +S ++ + E + I VLG G+ ++ ++AEV + + V ++ Sbjct: 347 HTPDAVANVLSTINNLR-KKEQQIITVLG---CGGDRDKTKRPEMAEVAAKMS-DKVIIT 401 Query: 408 GFHVL------ALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD R +V GD+V+V K Sbjct: 402 SDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKG 458 >gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium thermocellum ATCC 27405] gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 2360] gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum JW20] gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium thermocellum ATCC 27405] gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 2360] gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum JW20] gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 1313] Length = 485 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 146/476 (30%), Gaps = 52/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL++ + + + I+ DSR F I+G DGH FI A++ G Sbjct: 1 MKLKDLVKGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKFIPQAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 +V D+ V V D AL +A + ++ ITG+ GKTTT Sbjct: 61 TRAFLVQKDVDV---PDDATVVRVKDTRYALASVADIFFGHPSSKFNLVGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVDVDFGIFEL 167 M+ L + + +G+ N IG + M + + Sbjct: 118 TYMIKSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQELFSEMVQKNVNSVV-M 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S I V T ++ HL E +AK ++ + Sbjct: 177 EVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKL-------FGMCKKG 229 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + K +Y+ G AD + + V + +V + Sbjct: 230 LINIDNEFGPKVVDSARCEVYTMGIDNKADLRAVDIVHHPDSVDFTVVSPWFTGDVRVNI 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L +G +++ + K L + +T++ + + Sbjct: 290 PGKFSVYNALAAIGTCALMGVPFEYIKKGLEKVTVPGRA----EVLDIKKDYTVMIDYAH 345 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 S + ++L+ + + GR + V G G + +S ++ Sbjct: 346 ----SPDSLENILTTVKAYAPGRVVCVFG----CGGDRDKTKRPIMGRISGQLADFTIIT 397 Query: 408 GFH---------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +++ + + + + D++++ K Sbjct: 398 SDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGKG 453 >gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. Y412MC61] gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC61] gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] Length = 489 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 148/477 (31%), Gaps = 46/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + G + + + +DSR +AP FF +KG DGHDF AV +G Sbjct: 1 MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + S+ +PV V D A+ LA A R + +I +TG+ GKTTT Sbjct: 61 AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ K IG+ + +G + + E + Sbjct: 116 TSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S + H +AV T + HL +EE A G Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + I ++G + +D + + + + S V Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L ++T AL+ P GR + N + Sbjct: 296 LVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ++ + L + + V+G G L +++ Sbjct: 356 DS-------LENALKTVRQLAKRNVYVVIG----CGGDRDRSKRPLMAQVAVRYADVAIF 404 Query: 407 S-----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + +GDVV++ K Sbjct: 405 TSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461 >gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis NCTC 9343] gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Bacteroides fragilis NCTC 9343] Length = 485 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 162/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L +IQ I + G+ IDSR + F A+ G DGH +I AV+KG Sbjct: 1 MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A ++ + + + + V D A+ K A + ++ +TG+ GKTT Sbjct: 61 ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168 +L I + N+I P+TL R+ D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + +R + T + HL +E AK + F+ + K N D Sbjct: 179 VSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ R + E + L + E+ I Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Bacteroides fragilis 638R] Length = 485 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 162/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L +IQ I + G+ IDSR + F A+ G DGH +I AV+KG Sbjct: 1 MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A ++ + + + + V D A+ K A + ++ +TG+ GKTT Sbjct: 61 ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168 +L I + N+I P+TL R+ D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ R + E + L + E+ I Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella rochalimae ATCC BAA-1498] Length = 484 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 156/486 (32%), Gaps = 57/486 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + GIS DSR + P F A+KG DG ++ A+Q+GA +++ + + V +LS Sbjct: 17 ASIEITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLS 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136 IPV V DV L A T++A+TG+ GKT+ + I Sbjct: 75 IPVIHVLDVRHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGT 134 Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187 + + P + + + E S G + V A Sbjct: 135 VGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAAA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + H+ IE AK +F L L + D + + + + Sbjct: 195 AFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQV 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + G++ L + + + +E ++ G N LM G+ Sbjct: 255 LTIGRTGKF-ITLNRVEHQRLKQCVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A D ++L GR + G +D ++ VL + P Sbjct: 314 APPDMVFRSLEKLQGAPGRLELVGN-TEDGAPVYVDYAHKPEALE-----QVLLSVRPFT 367 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDAL 418 +GR I V G G L ++ + ++ + + A+ Sbjct: 368 QGRLILVFG----CGGDRDQGKRALMGKIAGNKADIMIVTDDNPRTEAPEKIRKDILQAV 423 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSN-------------SCGFYRLINL 463 P +I + + L GD ++V K + S ++I Sbjct: 424 PEAIEI---ADRGQAIEYAVGLLKAGDTLIVAGKG-HENGQIIGQEIYPFSDRL-KVIAA 478 Query: 464 LLEEFP 469 L E Sbjct: 479 LKERNK 484 >gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] Length = 487 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 73/479 (15%), Positives = 147/479 (30%), Gaps = 52/479 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L + ++ VN I DSR + + F A+KG DGH +I A+ Sbjct: 1 MKLLKDILYGVGIVAVNGTTDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA ++ T + I V + AL +A ++ +TG+ GKTT Sbjct: 61 GANAIICET--MPVNLVNGITYVQVKNGNAALAIMASNFYGTPSKNLKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165 +L Y I + + I Sbjct: 119 ISSLLYQLFKKA--GYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFC 176 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G + + A+ T ++ HL E K +F+GL KT Sbjct: 177 FMEVSSHGIHQKRIEGLVFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDGLPKTAWALT 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD ++ + A ++ ADF+ + + +++ +++ Sbjct: 237 NIDDKNGAVMLQNTKAKK----QTYALKTYADFRAQILENQFSGQLLKIDDNELWSKLIG 292 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 Y+M + L + E R++ ++ T I + Sbjct: 293 DFNAYNMLAIYATAQLLGLEKMEI-------LRLLSELENVDGRFQYYISGKNITAIVD- 344 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P ++K ++ ++ + E V G + ++ + V Sbjct: 345 YAHTPDALKNVLNTINALRTGNEDVITVV-----GCGGDRDKSKRPVMGHIASEMSTKVV 399 Query: 406 LSGFHVL-----ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + V E + D++++ K Sbjct: 400 FTSDNPRTESPSEILKEVEAGVEAQNTRKVLTIENREQAIKTACQLAQPKDIILIAGKG 458 >gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 499 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 82/483 (16%), Positives = 156/483 (32%), Gaps = 58/483 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I + F + G DG H F+ AV Sbjct: 10 LKELANLLLIKETIGDMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVEGAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVDFG 163 TTT +L LS + N P + + + D+ Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221 + E+ L R + IAV T + HL E K G + + Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLST 240 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 T + + + + ++G AD Q + + V + Sbjct: 241 TEKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEI 300 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E+ + +G N L + + + + +LS EGR + + Sbjct: 301 EISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIEGRMEIIDENQDFLVIVD 360 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A +VLS IS +G+ I V G G + + ++ Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409 Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V+++ + + ++ +++ + + D+V++ Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469 Query: 450 -KS 451 K Sbjct: 470 GKG 472 >gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 495 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 75/482 (15%), Positives = 141/482 (29%), Gaps = 55/482 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ ++ I V+G+ IDSR I + F I G DGHDF AV GA Sbjct: 3 LNEFASLLKTSQIVGDETVEVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 +VV + +++P V + A+ A II +TG+ GKTTT Sbjct: 63 ALVVERRL-----DVNVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTY 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168 ++ L +G+ IG D D+ + E+ Sbjct: 118 LIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIF 224 L R R V T + HL ++ A + + + Sbjct: 178 SHALDFGRVKGIPFR--SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQR 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + L + ++G K D + + +E + + + + Sbjct: 236 SYAILNVDDEASETFQRLTSAEVITYGIEKECDVRASNIRITAEGTEFTLTTFEGTENIR 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + ++ K+L+ + R + ++ + Sbjct: 296 MKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAE---VDSVPGRMEVVSEGQDYLVLVD 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + LS + EG V G G L ++ H+ Sbjct: 353 YAHTPDG----LENALSTVKEFAEGHVYCVFG----CGGDRDRTKRPLMGKVTAKYSDHL 404 Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 +++ + + +A DVV++ Sbjct: 405 FVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVVLIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] Length = 496 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 90/479 (18%), Positives = 164/479 (34%), Gaps = 49/479 (10%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T D++ I+G G + ++IDSR+ F + G H DGH +I A G Sbjct: 4 TLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+V D+ G + + V + +LA K +I ITG+ GKTTT Sbjct: 64 AEAVLVEKDVPPVPG---LVMIRVKSTQETMTELAPWFYDYPAQKMRMIGITGTNGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFE 166 +L L++ IG+ N IG + D+ + E Sbjct: 121 TNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVME 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + A +T I HL +E AKA +F L + Sbjct: 181 V--SSHALALNRVAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKT 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + ++GK++ D ++ ++ + + +M++ H Sbjct: 239 AIFNMDDASSPLIMNRVKTKVMTYGKARTNDVYPIRFHVGAKHMELSLHTPEGNMDLRLH 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N++ + D ++ L F GR ++ FT+I + Y Sbjct: 299 ITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGR---FQLIDAGQPFTVIVD-Y 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P + + QI +GR AV G G + + L+L + + Sbjct: 355 AHTPDGLDNVLRTARQI---TKGRLWAVFG----CGGDRDAKKRPIMGKLALELADILVV 407 Query: 407 SGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + ++ P+ ++ F S DV+++ K Sbjct: 408 TSDNPRSEDPDTIIRDIETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKG 466 >gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] Length = 497 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 162/461 (35%), Gaps = 35/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + GI++DSR + F A+ G G +FI +A+++GA V+ + + Sbjct: 15 GLTAHGGRDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGA 74 Query: 76 ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + +D AL A + + A+TG+ GKT+ L Sbjct: 75 RIAERDLAESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWM 134 Query: 132 ----------SIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFL 178 + + + P+TL RM + + GI + S G + Sbjct: 135 LVGREAVNLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRR 194 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V + T + HL +EE AKA +F + + D + A+ Sbjct: 195 LDGVMLRVGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDMAE 254 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + + G ++A+ ++ + ++ M G+ +V + IG A+N+L+ Sbjct: 255 VAADRGLDVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAENVLV 314 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+ + D D L GR + N +D ++ + + Sbjct: 315 AAGMAILSGEDPDQVFTVLPALSTVHGRMELAARRTNGA-AVFVDYAHTPDAVAT----- 368 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 L + PH GR +AV+G G L + + V+++ A Sbjct: 369 ALKALRPHVLGRLVAVIGA----GGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAA 424 Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A+ L +L GD +++ K Sbjct: 425 IRQAVLLGCPDATEVADRAEAILRAVDALAPGDALLIAGKG 465 >gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella tribocorum CIP 105476] gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella tribocorum CIP 105476] Length = 483 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 159/453 (35%), Gaps = 41/453 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GIS DSR + P F A++G DG +I A+++GA +V + A + LS+ Sbjct: 18 SIEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTD--CQAVLEDLSV 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142 PV V +V +L A T++A+TG+ GKT+ + + + A IG+ Sbjct: 76 PVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIGTV 135 Query: 143 -----YNNHIG-----VPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVI 189 N G P+ L R+ + G+ L S G + VR Sbjct: 136 GVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTAGAF 195 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + H+ +E+ AK +F+ L L + D + + + + + Sbjct: 196 TNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRRVLT 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G+ + + + + + +E +++ K G N L+ G+ Sbjct: 256 IGRKGHF-ITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGLAIATGLS 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 D AL GR + + ID ++ VL + P +G Sbjct: 315 PDKVFSALETLQGAPGRLEFV-GKTEKNAPVYIDYAHKPEALE-----QVLLSVRPFTQG 368 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPR 420 R I V G G L ++ V ++ + + A+P Sbjct: 369 RLIVVFG----CGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPT 424 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +I + + L GD +++ K Sbjct: 425 AIEI---ADRGEAISYSVGLLKAGDTLIIAGKG 454 >gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella schoenbuchensis R1] Length = 483 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 79/451 (17%), Positives = 139/451 (30%), Gaps = 35/451 (7%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + GIS DSR + P F A++G DG ++ A+++GA ++V + ++ + Sbjct: 17 ASIEITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTD--YNCALEGVY 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-- 140 +PV V DV +L A + A+TG+ GKT+ + A I Sbjct: 75 VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCAASIGT 134 Query: 141 ---------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAV 188 + P+ L R+ + G+ L S G + VR A Sbjct: 135 VGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVRLAAAA 194 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + H+ +E+ AK +F+ L + + D + + + Sbjct: 195 FTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRAGRPVL 254 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G+S R Q +Q + + L + A Sbjct: 255 TIGRSGKFITINRIEHQRLKQCVECRMGNDIY----TFDLPLAGEFQVTNALMAAGLAIA 310 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 +G R N + Y P ++ VL + P Sbjct: 311 TNVPPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEAL---EQVLLSVRPFTL 367 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSI 422 GR I V G G L ++ V ++ + KD L + Sbjct: 368 GRLILVFG----CGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAAS 423 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L GD +++ K Sbjct: 424 GAMEIADRGEAIDYAVRLLEAGDTLIIAGKG 454 >gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 2; AltName: Full=Meso-A2pm-adding enzyme 2; AltName: Full=Meso-diaminopimelate-adding enzyme 2; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum ATCC 824] gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum EA 2018] Length = 483 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 85/480 (17%), Positives = 152/480 (31%), Gaps = 55/480 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LLQ I I + GIS +S+ + F +IKG +DGHDFI A Q G Sbjct: 1 MKLKQLLQNIDYDLIKGDININIEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V+++ D SI + + V + AL L ++ +TG+ GKTT Sbjct: 61 AAAVIIDEDFHDSIENT--TLVKVKNSKVALACLCNLFYEEPSRELNLVGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKK------------TYACIGSYNNHIGVPLT-------LARMPVDVDFG 163 + L + I + P + Sbjct: 119 IHYIRDMLEAFGNSTGTIGTLGYELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNA 178 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ S L + R + + V T ++ HL IE + K ++ + Sbjct: 179 VMEVTSSALMKHRVDYCSFK--VGVFTNLSQDHLDEHGTIENYKNEKIKL-------FKM 229 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + + + G +++G NAD V +G S +V Sbjct: 230 CPVGVINLDDNIAGEIIEKGTCEFFTYGVLTNADLTASDMVYKPNSVSFNVHYKGISSKV 289 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + G N+L +G + L D ++ +K +S P GR + LN+ Sbjct: 290 KVNVPGEFTVYNVLAAIGSLLCLGIDFESILKLVSSIKPVLGRLETINNPLNKNIIIDYA 349 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + ++ +L GR I V G G L + + Sbjct: 350 HTPDS-------LEKLLIMAREMTNGRIITVFG----CGGDRDKSKRGLMGMAVGILSDY 398 Query: 404 VWLSGFHVLA-----LKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + R + L + D++++ K Sbjct: 399 CIITSDNPRHEKPEDIIRDIERGMQTINSSYEKITDRRCAIKRGIEILKEEDILIIAGKG 458 >gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] Length = 483 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 93/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ I + GI+IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSKDGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALTNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV+++ K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKG 457 >gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] Length = 489 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 157/462 (33%), Gaps = 48/462 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V + +DSR + + F A+KG +D F+ A+ GA V++ TD+ S+ Sbjct: 15 DINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSIQW 74 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 ++PV + L+ LA K T++ +TG+ GKTT ++L + + Sbjct: 75 QNNVPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGHKA 134 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-----------------SHLGEIRFLTH 180 A +G+ N G+ + + E+ S G ++ Sbjct: 135 AVMGTIGN--GLLDQVKEAKNTTGSAV-EVQANLADFVEKGADFASIEVSSHGLAQYRVE 191 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ A+ T ++ HL +E+ A AK F L I D L + Sbjct: 192 ALKFKSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQILNADDPIGAAWLNELPN 251 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ + +F + + + E + +E + + IG N+L+ Sbjct: 252 SIAVSCHPNFHATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVSNLLLAT 311 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ L D I+ +S GR + + A + +A L Sbjct: 312 AVLLALGYSFDDLIRTVSQLKGVNGRMELIKKAGKPTVIVDYAHTPDA-------LEKAL 364 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 + H +G+ + G G + L + V ++ + Sbjct: 365 NSARQHCKGKLWCIFG----CGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIE 420 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + R V + F + V+ DV+V+ K Sbjct: 421 ADILTGFSRMEDVGVIPDREEAIKFTIENAVEDDVIVIAGKG 462 >gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteriales bacterium ALC-1] gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteriales bacterium ALC-1] Length = 251 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 N +S D+R + + +FA+KG ++DG+ F+ AV+ GA VV+ + + Sbjct: 14 NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVDDEDAMINEN----CIL 69 Query: 88 VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 V+DVL L +LA R II++TGS GKTTTKE++ L++ A +G+ NNHI Sbjct: 70 VEDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNLNNHI 129 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GVPLTL D+DFGI E+G +H EI FL ++ +P +IT AHL F IE I Sbjct: 130 GVPLTLLSFSEDLDFGIVEMGANHQKEIEFLCNIAQPDYGLITNFGKAHLEGFGSIEGII 189 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 K+E+++ L + + K + +FG + + ++ Sbjct: 190 KGKSELYDFLRNNNKLVFINTNDE----KQINQINKYSKTITFGSNIDNNWF 237 >gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] Length = 487 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 154/474 (32%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + S+ + I DSR I+ Q+ F AIKG DGH FI AV GA Sbjct: 4 LKDILYKVAIESVKGSTAVDIKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGAN 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +VV I + V D AL +A +I +TG+ GKTT Sbjct: 64 VVVCEELPSEVIPE--VSYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTS 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMS 170 +L ++ I + + + + +V + +S Sbjct: 122 LLYQMFKTLGYKVGLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + T + V T ++ HL + K F+ L K G N DD Sbjct: 182 SHGIAQHRTLGLNFEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQLSKKGFALTNVDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + A + +G D++ + E+S+ ++L EV IG Sbjct: 242 NGNYMLQNTKA----KTFGYGVKNLTDYK----VKILEKSFSGLKLNINGTEVWSRFIGD 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L + +L ++ LS P EGR + + + Y P Sbjct: 294 FNAYNLLAVYAVADLLEVKDIENLQNLSQLKPVEGRYQHHMSSTGIHVIVD----YAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 +++ + + I E V G + L ++ + V L+ Sbjct: 350 DALQNVLQTTNDIRSRSEELITVV-----GCGGDRDTTKRPLMGKIAGNLSTKVILTSDN 404 Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + D++++ K Sbjct: 405 PRTEDPDSIIKDIEKGVEPQDVSKTLSITSRQQAIKTACILAQQRDIILIAGKG 458 >gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium chlorochromatii CaD3] gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium chlorochromatii CaD3] Length = 516 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 77/457 (16%), Positives = 148/457 (32%), Gaps = 39/457 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + +S DSR + F A++G DGH FI A+++GA ++V + + Sbjct: 43 ITAVSSDSRDMIEGALFVAVRGFCTDGHRFIESAIERGACIIVCEE--LPQSITHGCLYL 100 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +A + I +TG+ GKTTT ++T L++ IG+ Sbjct: 101 RVIDARKALAHVAALFYGNPAKQLRFIGVTGTNGKTTTSRIITEMLTAFAVPSGYIGTNL 160 Query: 145 NHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 IG L + V+ + +S + + +R A+ T Sbjct: 161 CRIGKRDIPLERTTPEAHELHALFALMVEAGCKAVVMEVSSHALLLQRVYGLRFDAALFT 220 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------AKSHALGI 244 + HL ++ A AK +F+ L+ G +N DD++ L+ + Sbjct: 221 NLTQDHLDFHHTMQAYAEAKQLLFDQLQPDGVAIVNTDDAYAPLMLQRVAPSQRVCCTLQ 280 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + S + + + + + E++L+ E +G + N++ L + Sbjct: 281 ANVPSVLQCPQYGQDFQAEVRHASLAATEMELRFPKGETELLTVGLAGSYNVMNVLQAAA 340 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 R I Y P +++ A+ L + Sbjct: 341 TGYCLGLQPAAICRALAAVHSVDGRMERVGRPNLPYQIFVDYAHTPDALQKALETLKALK 400 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALP 419 + G + ++ V L+ A+ D + Sbjct: 401 GEEARLMVLF-----GCGGNRDRLKRPIMGSIAASLADVVILTSDNPRDESPDAILDEIE 455 Query: 420 RSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + S L GDV+++ K Sbjct: 456 QGMQGAAHQRIADRAEAIRTAISQLQAGDVLLIAGKG 492 >gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis YCH46] gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides fragilis YCH46] Length = 485 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L +IQ I + G+ IDSR + F A+ G DGH +I AV+KG Sbjct: 1 MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A ++ + + + V D A+ K A + ++ +TG+ GKTT Sbjct: 61 ATAILCEE--LPVELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168 +L I + N+I P+TL R+ D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ R + E + L + E+ I Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] Length = 483 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 98/474 (20%), Positives = 159/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ I+ +I + + GI+IDSR I P + F A+KG DGH FI A++ GA Sbjct: 3 LSKLLKNIKPTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 V+ + + V A+ +A SK ++ +TG+ GKTT Sbjct: 63 AVLCED--MPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVAT 120 Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + +Y +P V + S Sbjct: 121 LLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK F+GL K N DD Sbjct: 181 SHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ A TI ++ ADF+ R + E + L+ EV IG Sbjct: 241 NGMVMVQNCKA----TIKTYSTRTMADFRARIIECHFEG----MYLEVDGHEVGVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L G +L + + +S GR + R A + +A Sbjct: 293 FNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSAEGVTAIIDYAHTPDALE 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + A VL +G+GR I V G G L V ++ V ++ + Sbjct: 353 NVLSAIHEVL-----NGKGRVITVCGA----GGNRDKGKRPLMAVEAVKQSDKVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L + V GDVV++ K Sbjct: 404 PRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKG 457 >gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus geothermalis DSM 11300] gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus geothermalis DSM 11300] Length = 429 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 101/462 (21%), Positives = 162/462 (35%), Gaps = 70/462 (15%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 ++ DSR +P+ AF A+ G G+ F+ A+ GA V+ + L Sbjct: 16 PEARSAKRLTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLTD---------L 66 Query: 82 SIP-VFGVDD-----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 +P V AL A A R ++ ++ ITGSVGKTT K AL++ Sbjct: 67 DVPRAVRVPSQAGQGAREALFAWARAERAKNPL-VVGITGSVGKTTAKSYAAAALNAHFM 125 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 YN + L + E+G+ +GE+ L LVRP + V+T I A Sbjct: 126 -----PVYNTMPAIACFLIEFGASGAPLVVEMGIDRVGEMAELVDLVRPDVGVVTAIGAA 180 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E +A K I +G Sbjct: 181 HLEQLGSLEGVAREKGVILQGRRGLVGTQAAPWFPHTP---------------------- 218 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + V QG + +A + ++ + A Sbjct: 219 --TYGFGEGVTYAGEALTVSPQGAQFTFQGVPVTLPLASRVQAEAAVLGLALALEAGLPL 276 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + + R ++ G FT+ID++YNA+P ++ AA+ L+ GRRI+VL Sbjct: 277 PEAAQRLAAVQVPGGRYRVHPGRFTVIDDAYNASPLAVTAALDALATF----GGRRISVL 332 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 G M E+G + H + + G L + T+ L Sbjct: 333 GRMLELGATERELHAQIGVHARQ-KADLTYGVGAFAAELGE--------RAYRTVPELLE 383 Query: 436 FIQSSLVDGDVVVVKSSNSC------------GFYRLINLLL 465 + + + DGDVV+VK+S G ++ LL Sbjct: 384 DLLAEVRDGDVVLVKASRGISWTPEQRAQEGVGLDVVVEALL 425 >gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium fredii NGR234] gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium fredii NGR234] Length = 486 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 145/460 (31%), Gaps = 36/460 (7%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G + + GI+ DSR + P + F A+ G +G +I A+ +GA V+V Sbjct: 14 LSAQLQGNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYIADALSRGAAAVIVAE- 72 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 S PVF + + L + A R T++A+TG+ GKT+ + Sbjct: 73 --GSGADAGAPVFELSEPRRFLAQAAARLFGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130 Query: 134 KKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLT 179 A I + P++L ++ + D G+ + S G + Sbjct: 131 GLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQSRL 190 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 VR A T + H+ +E ++K +F L G+ + + D + + Sbjct: 191 DGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAIAA 250 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G++ + R +QS V + Sbjct: 251 ARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDIFEIHV----PLAGDFQVANA 306 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + A A S +G R L Y P +++ + Sbjct: 307 LVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAYVDYAHKPDALENVLES 366 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413 + P GR I V G G + ++ V ++ + + Sbjct: 367 ---VRPFTTGRVIIVFG----CGGDRDKGKRPIMGQIAARLADVVIVTDDNPRSEIPETI 419 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 420 RSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKG 459 >gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 496 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 75/463 (16%), Positives = 141/463 (30%), Gaps = 58/463 (12%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-------- 82 ++DSR + + F A+KG DG FI +A+++GA +++ D L Sbjct: 25 TLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSKFAKFNL 84 Query: 83 -----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135 V V ++ L+++A A K T+ ITG+ GKTTT ++L Sbjct: 85 DRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQW--HNLL 142 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLT 179 G+ + I + +S G +F Sbjct: 143 GGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQFRA 202 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +A+ T ++ HL + +EE A AK + T +N DD + Sbjct: 203 EALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRL-FNELSTKAQVINADDEIGREWLTQL 261 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + S + + K + + + + + E+ IG N+L Sbjct: 262 PNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLIGAFNVNNLLTA 321 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L D+ IK GR + + +A Sbjct: 322 FAGLLALGFDIQDLIKTSPNLVGVAGRMECITAPNKPMVIVDYAHTPDA-------LEKA 374 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410 L H EG + G G + L ++ V + + Sbjct: 375 LQAARLHCEGELWCIFG----CGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKI 430 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + DV+++ K Sbjct: 431 MADIVKGFSKPQQIIH--NREEAIKTAIEQAKATDVILIAGKG 471 >gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] Length = 493 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 85/480 (17%), Positives = 169/480 (35%), Gaps = 47/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL + ++ +++DSR ++P F AIKG DG FI A+++ Sbjct: 1 MMQLSELL----LSWCELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQ 56 Query: 64 GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 GA V+ + D G++ + V +D + L+ +A A K ++ ITG+ Sbjct: 57 GAVAVIADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTN 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE 166 GKTT +++ + + + A +G+ N G P+ + + +++ + Sbjct: 117 GKTTISQIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAK 176 Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 L S G ++ + + AV T ++ HL +E A AK +F +I Sbjct: 177 LTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHSI 236 Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D + LK HA+ + + +E + V ++ Sbjct: 237 INADDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSVSSDWGNVA 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG A N+L+ + L D+ + S + GR + + Sbjct: 297 FSVPLIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELFTADNKAKVVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A ++ + H EG+ + G G + + ++ Sbjct: 357 AHTPDALDKAL-------QALRVHCEGKLWCIFG----CGGDRDTGKRPMMASIAEQQAD 405 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + LS + + L S H F S + D++++ K Sbjct: 406 VIILSDDNPRSEEPSLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKG 465 >gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 486 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 158/477 (33%), Gaps = 50/477 (10%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 DL++ I + + I+ +S++ F IKG DGH++I A+Q Sbjct: 1 MKLKDLIENIDVLETNVGDFGKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA LVVV+ S I + AL ++ +I +TG+ GKT+ Sbjct: 61 GACLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166 T M+ L + + IG+ N IG + +M + + Sbjct: 121 TTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFWQMKNEGVDSVV- 179 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S F + + V T + HL +E +AK ++F + +N Sbjct: 180 MEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF---GMSKKRVVN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + + ++ K +A R K ++ E+ G+ E+ + Sbjct: 237 ADDMWGKRIIEMYPDS-----VTYAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLN 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L L +D K L GR + + Sbjct: 292 IPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKFTVVIDYAHTP 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++++ ++ +GR++ + G G + ++ V + Sbjct: 352 DG-------LLNLMKTVNEVTDGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIV 400 Query: 407 SGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + ++ + + + D +V+ K Sbjct: 401 TSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 457 >gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] Length = 490 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 78/478 (16%), Positives = 154/478 (32%), Gaps = 45/478 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + + V GI+ +S + AFFAIKG DGH FI A+ K Sbjct: 1 MKELQDLL--TGEKVVNLGKSQVVKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITK 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVF-GV--DDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 GA V + + P V ++ +L + +I ITG+ G Sbjct: 59 GASTVFIQDTSIIDTLKRKYPYINIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGI 164 KT+ +L + IG+ N IG + + + Sbjct: 119 KTSVSNLLAQYYENAGYKVGVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDV 178 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 +S +F + H + T + HL +E AK E + Sbjct: 179 VVAEVSSHAAHQFRVYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREF-FNQIQLFNDK 237 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + + I +F+++ + ++ ++ +GK++ Sbjct: 238 AIASVNIDDPYGKRIYNDFKEKIDFITYGFEGEFKIKDYNLSLFETLFNIEYKGKTLNFK 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N+ ++ + D+D P GR + + F +ID Sbjct: 298 TKLRGLFNVYNLSASISFLIKDGFDIDFLKDKTLDLKPIRGR---FEVVEAKDFIVVIDY 354 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ + ++L ++ + R I V G G L ++ V Sbjct: 355 AHTPDALE-----NILKSLNQIKQNRVITVFGA----GGNRDRTKRPLMGKVAQDFSDIV 405 Query: 405 WLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + + + + + + V + + GD+V++ K Sbjct: 406 ILTSDNPRFEDPNQIIKDILEGITQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGKG 463 >gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus fusiformis ZC1] gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus fusiformis ZC1] Length = 461 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 111/471 (23%), Positives = 187/471 (39%), Gaps = 25/471 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQ 62 + L +QG I Q V I + + F D H + Sbjct: 5 SVQKLRNVLQGKLIHGSEQWSVKQAIYYNRHDLTKSHSLLFV----SRND-HINWQEIDR 59 Query: 63 KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 KG L++ + +L + V V V A R + ++A+TG+ GKTT Sbjct: 60 KGPSLIISDKPSTELKNALENTTVLQVKSVAQAYWAFIEYYRGLFEIPVVALTGTCGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TKEML S + A + S N L + IFELG+ + G I+ + Sbjct: 120 TKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGIDDKTQAAIFELGLGNTGNIKHQCMI 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +P I +IT I HL +E AKAEI EG+++ GT+ +N DD+ + + K Sbjct: 180 YQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIKEDGTLIINADDANTKKISLKRFK 239 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I FG AD++ K + + +++ + V G G H N L + Sbjct: 240 GKIIK---FGLQDTADYKASKVEFANTGMKFVLEVADERYNVFVPGYGEHQVYNALAAIA 296 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + AI L F + G T+ID+++ NP S++AA+ V+ Sbjct: 297 ASHEMGLTIRQAIAGLRTFK---QMARHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVID 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 + + I VLGD+ +G + +H ++ ++++ I + G + D + Sbjct: 354 TVGKDKK--VILVLGDIKRLGNFEEKYHREIGSMVAVRKIDTLITIGKRAEKIADQAQKD 411 Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSCGFYRLINLLLE 466 S VH + + G+ ++ L +V++K S S N L Sbjct: 412 GTSAEVHTFKEVAGVLELLKPKLDADTIVLIKGPMSSRSM--IEFANKLKN 460 >gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 500 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 84/476 (17%), Positives = 140/476 (29%), Gaps = 37/476 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ + +N IS DSR I + F A+ G DGH F+ A+ GA Sbjct: 3 ISKILENVSAK-KSYSKDIDINNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAV 61 Query: 67 LVVV--NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 VVV ++D+ I V V+D AL ++A R ++ ITG+ GKTTT Sbjct: 62 AVVVNSSSDVPCLAKYPDIQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTTT 121 Query: 123 KEMLT---------IALSSIKKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGIFELG 168 +L L S K Y C+ P L V + Sbjct: 122 ATLLYKLFLGMGFGAGLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFME 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + AV T + HL ++ AK F+ L +T N D Sbjct: 182 VSSHATVQQRIAGLTFRGAVFTNLTQDHLDYHKTMDNYRDAKKLFFDHLPQTAFALTNAD 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + A ++ + Q V +GK V Sbjct: 242 DRNGNFMLQNTKAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVSTPF 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 L + + L + E R + + Y Sbjct: 302 VGSFNAQNLTAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMAGISAIVDYAH 361 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++K +S ++ + V G + + + L+ Sbjct: 362 TPDALKNVLSTINDVKSPDSRVVTVV-----GCGGDRDKTKRPIMAQEAAAQSDTLVLTS 416 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L ++ GD+V+V K Sbjct: 417 DNPRTEDPQSILDDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKG 472 >gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 494 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 80/481 (16%), Positives = 145/481 (30%), Gaps = 47/481 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+++ +Q + + I+ DSR++ F A+ G DGH+++ A++ Sbjct: 1 MKQLQDIVKTLQAPQVTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+V+ + S I V V+D A+ +I +TG+ GKTT Sbjct: 61 GAVAVLVSKPVEV---SGDICVITVEDTRTAMMACVPYFFDYPANSMRMIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167 T M+ L + IG+ + IG V + V+ G+ + Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225 +S V AV T + HL E A K Sbjct: 178 EVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGK 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + + I ++ N + S V G V Sbjct: 238 GAIINIDDAYGHRVVEKTKAPIITYSIDGNGTLNAHDVDMTPKSSRYTVSYDGHDYTVAM 297 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + G N L +G + ++ KAL F GR + + Sbjct: 298 NTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHT 357 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + ++L E R I V G G + + ++ V+ Sbjct: 358 PDG-------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVY 406 Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + +K+ L + + GD+V++ K Sbjct: 407 VTSDNPRTEDPVQIVKDVEAGVKEGLREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] Length = 483 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 164/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL+ I+ ++ + G++IDSR IA F A+KG DGH FI A+++G Sbjct: 1 MKLNELLKNIKPVAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFIPKAIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A ++ + + + V+ A K+A K ++ +TG+ GKTT Sbjct: 61 AKAILCED--MPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKLVGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + + +Y +P V+ + Sbjct: 119 ATLLYNMFRKMGYKCGLLSTVCNYIEDEAIPADHTTPDPIELNELLGRMVNTGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + ++ + T + HL E +AK F+ L K N D Sbjct: 179 CSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDELPKGAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ ADF+ R + E + L EV I Sbjct: 239 DKNGMIMVQNTKA----TVKTYSTRSAADFKARILECHFEG----MYLDIDGHEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + +S H GR + +T I + Y Sbjct: 291 GKFNVSNLLTVYGAARMLGKQPEDILLVMSTLHSVSGR---LEPIHSPEGYTAIVD-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + + ++ +G+G+ I V G G L ++ V ++ Sbjct: 347 TPDALENVLKAIHEV-LNGKGKLITVCGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L V GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAGKG 457 >gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] Length = 522 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 148/481 (30%), Gaps = 46/481 (9%) Query: 6 TFHDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +L++ + G +P V GI+ + R P F A G DGH FI HA+++ Sbjct: 8 TLPELIRHLPIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAIER 67 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121 G VV + I LSIP V + AL L+ A + T+I +TG+ GKTT Sbjct: 68 GIVAVV----GMQEISGLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTGTDGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFE------------- 166 T ++ L + + + + N IG + V + Sbjct: 124 TSNLIYQILLAAGHSAGIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRAAGLTHV 183 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTG 221 L + G + + V+T I HL E + E EK Sbjct: 184 VLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSETPEKPH 243 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + +L S+G ++ AD + + +++ ++ + Sbjct: 244 GNPRLAVLNRDDQSYEYLQSLVRVPAVSYGLAEGADLRAENIRYEADRLRFDIVGRDFRQ 303 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA-IKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G + N L + + ++ GR +R + Sbjct: 304 PVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMSGVPGRMERIHMGQSFHAIV 363 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + NA L GR IAV G + +++ L+ + Sbjct: 364 DFAHTPNA-------LKQALLTARQITRGRVIAVFGSAGLRDREKRRLMAEVSAQLADIS 416 Query: 401 I--------SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 I + + + R + D+V+ Sbjct: 417 IFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMAVQMAKPDDLVIAC 476 Query: 451 S 451 Sbjct: 477 G 477 >gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ochrobactrum anthropi ATCC 49188] gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi ATCC 49188] Length = 490 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 80/476 (16%), Positives = 149/476 (31%), Gaps = 44/476 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + + G + + G++ DSR + F A+KG DG F+ A Sbjct: 1 MT--MKLKEIA-LFKELASGDAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ D +I +PV VDD AL A + ++A+TG+ GKT Sbjct: 58 VKRGASAIIAGKDT--AIADAGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFE-- 166 + + A IG+ + D G+ Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + V+ T + H+ + IEE AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ + + E+ V+++ Sbjct: 236 FSDDHFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGDEIFEIE 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 Q + + V A ++ K G+ + + Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL+ + P GR I V G G + ++ + Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVAIV 404 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + A P + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAAPGATEI---GDRREAIFTAVSMMQAGDTLVVAGKG 457 >gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] Length = 482 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLLQ IQ I + G++IDSR I F A++G DGH +I A+ KG Sbjct: 1 MRLSDLLQTIQPVRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + I V D A+ K+A SK +I +TG+ GKTT Sbjct: 61 AVAVLCEE--LPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + + VP D + Sbjct: 119 ATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ L K N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + S V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 457 >gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Bacillus sp. m3-13] Length = 496 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 78/460 (16%), Positives = 149/460 (32%), Gaps = 38/460 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 G P V+ I DSR + F IKG DGH +I A++KGA ++VV + Sbjct: 14 KVYGDFP-LSVSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVVQD--MP 70 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 I V D AL +LA A +K I+ +TG+ GKTT ++ + Sbjct: 71 EQLVEGICYVHVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEG 130 Query: 135 KTY------------ACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTH 180 S N V + V+ G+ + + +S G + Sbjct: 131 YKTGLSGTIEIDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLA 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 V V T + HL +E +AK +F L + + + Sbjct: 191 GVEFQNGVFTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYV 250 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + I ++G ADF+ R+ + ++ ++ E+ +G N+L + Sbjct: 251 QMTGARIITYGIKNEADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYNILSVI 310 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 ++ + + L P GR + + Y ++ A+ + Sbjct: 311 CVLWDKGMPFERILNHLRETTPPSGRMQTLETGDKRNVIID----YAHTEDAIGKALDSI 366 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKD 416 S H I G + + + + + ++ + + Sbjct: 367 RMFSKHKIISII------GTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQ 420 Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + +GDV+++ K Sbjct: 421 GMAEGAVHENFECIPDREQAIIRAVEIAGEGDVILIAGKG 460 >gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella parvula ATCC 17745] gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella parvula ATCC 17745] Length = 494 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 47/478 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++ + + + ++ DSR++ F A+ G DGHD++ AV+ GA Sbjct: 4 LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAV 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+V+ + S + V V+D A+ +I +TG+ GKTTT Sbjct: 64 AVLVSKPIE---ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNGKTTTTH 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMS 170 M+ L + IG+ + IG V + V+ G+ + +S Sbjct: 121 MIRHILRAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228 V AV T + HL E A K Sbjct: 181 SHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKGAV 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + I ++ + + S V G V + Sbjct: 241 INIDDAYGQRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTT 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +G + ++ KAL F GR + + + Sbjct: 301 GLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDG 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++L E R I V G G + + ++ V+++ Sbjct: 361 -------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVYVTS 409 Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L H GD+V++ K Sbjct: 410 DNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKG 467 >gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Rickettsia typhi] Length = 492 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 48/455 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +NG+S +S+++ E FFA+KG + DG+DFI A+ GA LV+ ++ V Sbjct: 13 KINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE----NKKNTVIDKV 68 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+DV AL + + +I++TG+ GK++ + ++K A IG+ Sbjct: 69 IYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGL 128 Query: 146 H--------IGVPLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPHIA 187 VP ++ S G + + +I Sbjct: 129 EIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIV 188 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T+ + HL E AK ++F I + D Sbjct: 189 SFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKF 248 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + GK D Q+ K ++ + IG A N+L+ + Sbjct: 249 ITVGK--KGDVQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYYTG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D I+ALS P +GR + T I Y+ P +++ A+ L I PH Sbjct: 307 FKFDEIIEALSKVKPVKGRM-------ERIDGTNIFVDYSHTPDALEKALIELQNIKPH- 358 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 G+ + G G L ++ +V ++ + + + Sbjct: 359 GGKLSVIFG----CGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRGI 414 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E+ + + ++L D++++ K Sbjct: 415 GTATYTEI-ESREEAIKYGINNLKQDDILLIAGKG 448 >gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia typhi str. Wilmington] gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington] Length = 498 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 48/455 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 +NG+S +S+++ E FFA+KG + DG+DFI A+ GA LV+ ++ V Sbjct: 19 KINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE----NKKNTVIDKV 74 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V+DV AL + + +I++TG+ GK++ + ++K A IG+ Sbjct: 75 IYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGL 134 Query: 146 H--------IGVPLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPHIA 187 VP ++ S G + + +I Sbjct: 135 EIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIV 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T+ + HL E AK ++F I + D Sbjct: 195 SFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKF 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + GK D Q+ K ++ + IG A N+L+ + Sbjct: 255 ITVGK--KGDVQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYYTG 312 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D I+ALS P +GR + T I Y+ P +++ A+ L I PH Sbjct: 313 FKFDEIIEALSKVKPVKGRM-------ERIDGTNIFVDYSHTPDALEKALIELQNIKPH- 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 G+ + G G L ++ +V ++ + + + Sbjct: 365 GGKLSVIFG----CGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRGI 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E+ + + ++L D++++ K Sbjct: 421 GTATYTEI-ESREEAIKYGINNLKQDDILLIAGKG 454 >gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] Length = 483 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 98/474 (20%), Positives = 159/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ I+ +I + + GI+IDSR I P + F A+KG DGH FI A++ GA Sbjct: 3 LSKLLKNIKPTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 V+ + + V A+ +A SK ++ +TG+ GKTT Sbjct: 63 AVLCED--MPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVAT 120 Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + +Y +P V + S Sbjct: 121 LLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK F+GL K N DD Sbjct: 181 SHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ A TI ++ ADF+ R + E + L+ EV IG Sbjct: 241 NGMVMVQNCKA----TIKTYSTRTMADFRARIIECHFEG----MYLEVDGHEVGVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L G +L + + +S GR + R A + +A Sbjct: 293 FNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSAEGVTAIIDYAHTPDALE 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + A VL +G+GR I V G G L V ++ V ++ + Sbjct: 353 NVLSAIHEVL-----NGKGRVITVCGA----GGNRDKGKRPLMAVEAVKQSDKVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L + V GDVV++ K Sbjct: 404 PRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKG 457 >gi|239817426|ref|YP_002946336.1| Mur ligase middle domain protein [Variovorax paradoxus S110] gi|239804003|gb|ACS21070.1| Mur ligase middle domain protein [Variovorax paradoxus S110] Length = 1024 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 122/478 (25%), Positives = 201/478 (42%), Gaps = 40/478 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQ-EAF-------------FAIKGP 49 WT ++ + G + +G++ S + F A+KG Sbjct: 569 WTAGEMARVTGGEWVVRPEDGWRASGVTQRS-FLRKGRVVFEHQARPSKTPLAAVALKG- 626 Query: 50 HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 V + A V+ A +PV VDDV A+ L AR Sbjct: 627 -----------VLQPAAAVLCTDP--APHLDKRVPVLQVDDVPQAVLALGAHARTEFTGR 673 Query: 110 IIAITGS-VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 + + GS +T ML AL+ + G+ + G+ L MP + + E+G Sbjct: 674 VCGVLGSGTAGSTVAAMLADALAVWGEVGRPEGNVSLPSGMAWNLTCMPRHAAYWVLEMG 733 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 H+ LVRP +AV+T ++ A + E A + IFEG+ + LN D Sbjct: 734 SPHMLATA---QLVRPMLAVVTGLSAASQKHRGPSEAAAHMDSRIFEGMAPGDSAVLNRD 790 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 F + A ++ + ++G+ K+AD +L + ++ Q+ G+ ++ + Sbjct: 791 LPEFATFAEAAMAHQLQIV-TYGEHKDADVRL----LSFDHGEVQAQVLGEPFQLRLNAP 845 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G HM + + L + + + A++ + F P GRG + + G F LIDE+Y+A Sbjct: 846 GRHMGASAVAALAALQAMRLKLAAAVEPFAQFEPPGGRGALHTIHIGGGSFKLIDETYDA 905 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP+SM+AA+ +LSQ R +A+LGDM E+G +Q H+DL L V L G Sbjct: 906 NPSSMRAALELLSQAPCEPARR-VAILGDMQELGPAAQRHHLDLEPELLASQPDRVLLCG 964 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + AL + + H+ + L + L GD V+ KSS G RL +L Sbjct: 965 PLMRALHARIRTKVRSHWFVDVSDLSTALGGLLQPGDWVLAKSSAGVGLSRLARVLKA 1022 >gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] Length = 501 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 74/465 (15%), Positives = 157/465 (33%), Gaps = 39/465 (8%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71 G + + + G+++DSR + F A+ G G +FI +A++ GA ++ + Sbjct: 13 GLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTDAAGA 72 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + +D L A ++ +TG+ GKT+ Sbjct: 73 RIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASFCRQIWC 132 Query: 132 SIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHLGEIRFL 178 + IG+ P+TL R+ + + + S G + Sbjct: 133 ELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASSHGLEQRR 192 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A + + HL + +E +AKA +F + + + D A+ Sbjct: 193 LDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDPKGPAMAE 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + G+ +D ++ + + + +G++ ++ + +G +N+ + Sbjct: 253 IARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGFQGENVAL 312 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V +D D L GR + N +D ++ + S Sbjct: 313 AAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGA-AVFVDYAHTPDAVST----- 366 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 LS + PH GR +A++G G + L + N V ++ A Sbjct: 367 ALSALRPHVMGRLVAIIGA----GGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAA 422 Query: 414 LKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ + L L GD +++ Sbjct: 423 IRAAVMAGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICG 467 >gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] Length = 480 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 89/469 (18%), Positives = 157/469 (33%), Gaps = 40/469 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L + V G+++DSR++ P + FFA+ G DG FI A++ G Sbjct: 1 MNLRELFSG-DATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A VV + S+S+PV + AL A A R TI A+TG+ GKT+ Sbjct: 60 AVAVVADHAH-----SVSVPVIVTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAA 114 Query: 125 MLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMS 170 S+ + + + G+ L S Sbjct: 115 FTRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEAS 174 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR A T ++ H+ +E +AK +F L G + D Sbjct: 175 SHGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADH 234 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + G+ K +L M +Q +G++ + +G Sbjct: 235 EHSAAVIAAARARKLDVITIGR-KGEGIRLVDATIDGFGQKMTIQHRGQTHRLRLPLVGE 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +N L+ G+V D AL +GR + F Y P Sbjct: 294 FQIENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIGDCRGAPVFVD----YAHKP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ A+ + P+ +GR + V G G + L +++ V ++ + Sbjct: 350 DALMKALEA---LRPYAKGRLVVVFGA----GGDRDAGKRPLMGAIAMRYADAVIVTDDN 402 Query: 411 VLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + +SL GDV+++ K Sbjct: 403 PRSERPATIRAEILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKG 451 >gi|296534967|ref|ZP_06897261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseomonas cervicalis ATCC 49957] gi|296264705|gb|EFH11036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseomonas cervicalis ATCC 49957] Length = 395 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 208/380 (54%), Gaps = 2/380 (0%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + V D L L L AAR RS A I AITGSVGKTTTKEML L+++ T+A + SYN Sbjct: 1 LLRVGDTLAGLQALGAAARARSTARIAAITGSVGKTTTKEMLRHGLAALAPTHAAVASYN 60 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N G+PLTLARMP D +G+ E+GM+H GEI L L PH+A ITT+ AH+ + +E Sbjct: 61 NQWGLPLTLARMPRDSAYGVLEIGMNHRGEIAPLARLAAPHVAAITTVEAAHIGHLGSLE 120 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 EIA KA+I +GL + L D + F L ++ A G+ + +FG A+++L ++ Sbjct: 121 EIAEEKADIMQGLAPGAPVVLPRDSASFARLAGRAEAAGL-RMVTFGADPAAEYRLLDYR 179 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 +E + L+G++ + G H+A N L + + L AD + AL+ F P Sbjct: 180 GGAESGLATLSLRGETHALALAAPGRHLALNALAAIALAEALGADRAGFLAALTEFRPGA 239 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GRG R L G LID+SYN P +M+A + VL P GRRIAVLGDM E+GE Sbjct: 240 GRGGRVVLDLPGGSALLIDDSYNGQPPAMRAGLGVLGSQIPGPGGRRIAVLGDMRELGEH 299 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 + H L + L V+ G + L DALP + + ++ D L ++ ++ G Sbjct: 300 GPALHASLLPDV-LAAADMVFCCGALMRGLYDALPENRRAAHRDSSDELAPLVRQAVRPG 358 Query: 445 DVVVVKSSNSCGFYRLINLL 464 DV++VK S ++ L Sbjct: 359 DVILVKGSLGSRMAVVVRAL 378 >gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] Length = 502 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 84/477 (17%), Positives = 158/477 (33%), Gaps = 47/477 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + LL I+ + I DSR + + F A+KG DGH +I AV Sbjct: 1 MTNLKQLLHHIEVIQTRGNAPESIENIHFDSRKVQANDLFVAVKGTQADGHQYIGQAVAL 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +VV T S S V + AL LA K ++ ITG+ GKTT Sbjct: 61 GAKVVVCET--FPKNLSDSATYIQVANSAKALGWLASNYYDHPSKKLKLVGITGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTY---ACIGSYNNHIGVP-----------LTLARMPVDVDFGIFEL 167 T +L + I +Y + +P L V + Sbjct: 119 TVTLLHQLFRKFGYRVGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ + A T I+ HL +AK + F+ L T +N Sbjct: 179 EVSSHAVVQERIAGLHFTGAAFTNISHDHLDFHETFANYINAKKQFFDQLPPTAFALINA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A T +F + ADF+ R + + +ME+ +++ Sbjct: 239 DDKRGMVMLQNTVAK---TQRTFALKQFADFKARVVESSLQGLFMEIDDVEVWFQMI--- 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 N LGI +I + + L++ + R+ + + T + + Y+ Sbjct: 293 ----GYFNAYNLLGIYAIAVLLGEDTTETLTLLSGLQSVPGRFEKIIGESGATGVVD-YS 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + + ++ G+ V G + + ++ V + Sbjct: 348 HTPDALENVLQTIFELRQSGQKIITVV-----GCGGNRDASKRPIMAQIACQYSDVVIFT 402 Query: 408 GFHVL---------ALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +++ + + D+++V K Sbjct: 403 SDNPRNEPPMQILEDMQEGVSIDDEPKTSLIASRKDAIRKACELAQKQDIILVAGKG 459 >gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] Length = 521 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 151/477 (31%), Gaps = 40/477 (8%) Query: 7 FHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL I + + V ++ DSR + P F A++G DGH FI AV++G Sbjct: 15 LEKLLGGISALELRGNRELAGEVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERG 74 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122 AG V+ + S + V D AL + A + II +TG+ GKTTT Sbjct: 75 AGSVICEE--IPSGIEDGVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTT 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167 +++T L++ + IG+ G+ RM + + Sbjct: 133 SKLITSMLNARGISCGYIGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVV-M 191 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + H +R AV T + P HL +E ASAK +F+ L G LN Sbjct: 192 EVSSHALMLKRVHGIRFRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTPDGFAVLNR 251 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKSMEVVH 285 DD + A+ I + + + + + VV Sbjct: 252 DDPAAPFMAARVLPEKIYCCSLSARQDTSLACGNSFFAEITGASIASSRVALHFPETVVS 311 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + N++ L S+ + R + Sbjct: 312 IEVRLPGSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGMAFVD 371 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P ++ +S L + I V G G ++ V Sbjct: 372 YAHTPDALFKVLSTLRDLKDEHSR-LIVVFG----CGGNRDRSKRPEMGRIASELADEVI 426 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + ++ + R S + GDV++V K Sbjct: 427 ITSDNPRDEDPEAILDEIEQGMNRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKG 483 >gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] Length = 483 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 85/453 (18%), Positives = 152/453 (33%), Gaps = 35/453 (7%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + + GIS DSR I P F A++G DG +I A+++GA +V + ++V + + Sbjct: 15 NLSSMEITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVV--LEN 72 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 LS+P+ V D +L A T++A+TG+ GKT+ L + + A I Sbjct: 73 LSVPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASI 132 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHI 186 G+ + + L S G + VR Sbjct: 133 GTLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRLDGVRLTA 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T + H+ + +E+ AK +F+ L L + D + + + Sbjct: 193 AAFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVIDTLTQARRH 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ + + + + +E +L+ G N LM G+ Sbjct: 253 VLTIGRKGQF-ITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMAAGLAIST 311 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D ++L GR + N ID ++ VL + P Sbjct: 312 GISPDKVFRSLETLQGAPGRLELVGKTENNA-SVYIDYAHKPEALE-----QVLLSVRPF 365 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPR 420 +GR I V G G L ++ V ++ + KD L Sbjct: 366 TQGRLILVFG----CGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEMPAKIRKDILQA 421 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L GD +++ K Sbjct: 422 APKAIEIADRGEAITYAVGLLKAGDTLIIAGKG 454 >gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] Length = 487 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 156/476 (32%), Gaps = 53/476 (11%) Query: 10 LLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + GH + V GI+ DSR + F A+ G DGH + AV++GA Sbjct: 3 LAALLAGHPHDLLQGDADTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 +V+T A ++ + V+ A + A +++ITG+ GKT+T Sbjct: 63 AALVST--TAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAA 120 Query: 125 MLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIFE---------------- 166 ML ++++ + G+P+ L + Sbjct: 121 MLESVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVV 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S L + I V T ++P HL + ++ +AK +F G+ +N Sbjct: 181 MEASSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGMS--SDAVVN 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + + +FG K ADF R ++ + + + G+ Sbjct: 239 TDDPVSQEILERM-----PRATTFGMDKTADFTARAFEVSATGTRFLLVHDGQEYPAHLP 293 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + + L + A+ AL GR + R A Sbjct: 294 IPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLRRADGTSIVVDYA--- 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 S + L + GR + V G G+ S I + + + V Sbjct: 351 ----HSADSLEKTLRTLREVSSGRLLTVFG---CGGDRDASKRIPMGSLAGHLSDHVVIT 403 Query: 407 SG----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + +A+ R + S GD V+V K Sbjct: 404 SDNPRTEDPETIINAVERGVRTTDTPYDRITDRRAAIARALSLAEPGDTVLVAGKG 459 >gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] Length = 488 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 95/445 (21%), Positives = 151/445 (33%), Gaps = 38/445 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + FFA+KG H DG FI A GA VV IG S+PV +D++ Sbjct: 24 DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNLY 80 Query: 93 GALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGV 149 AL +A A S A +I I TG+ GKTTT + ++ + + G+ Sbjct: 81 RALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNGI 140 Query: 150 PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L M F + S +G + AV T + Sbjct: 141 VLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTRD 200 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E AK +F + + +++K A S + Sbjct: 201 HLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKGDQP 260 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A + E EV+ +G + V H +G +N L T+G + + +++T +K Sbjct: 261 AYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETVLK 320 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 ++ P GR + R F Y+ P ++ AI L ++ GR V+ Sbjct: 321 EVAKLMPPAGRMQIVRDDHGPIFAVD----YSHTPDAVTQAIKALEGLAEARGGRIWIVV 376 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS--IHVHYSE 428 G G L + V L+ + + E Sbjct: 377 GA----GGDRDHGKRPLMGQAA-CAADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE 431 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + DV++V K Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKG 456 >gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] Length = 488 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 99/460 (21%), Positives = 169/460 (36%), Gaps = 40/460 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + I DSR + P FF I+G DGH ++ AV +GA ++V + D+ Sbjct: 6 ELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKDLNY 65 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 I F V++ L LN+++ +K II +TGS GKT M+ A++ Sbjct: 66 YHDK--IIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYC 123 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHL 181 + + G + + + + S G Sbjct: 124 SSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDG 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + +IAV+T I HL E+ AK ++FE ++ TG LN DD F LK + Sbjct: 184 INFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++G +D + + + S ++ +G + V I N+L G Sbjct: 244 ----RILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTG 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + D I A+ P EGR + + + S AI Sbjct: 300 VLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVIIDYCQ-----HISNYEAIFEYV 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 G GR IAVLG G+ + +L ++ + Y + HV L+ G V + Sbjct: 355 DGVRQGHGRIIAVLGAP---GKRNYKLRKELGQLANRY-LDHVILTQLDDRGEDVYEICK 410 Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + I+ E+ D++++ K Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKG 450 >gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] Length = 485 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 165/476 (34%), Gaps = 50/476 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T + S+ VN I SR++ + F AIKG +DGH+FI A Sbjct: 1 MK-LKTL--ISDITN--SLEYASDIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118 + GA VV + L +P V D AL LA +I ITG+ G Sbjct: 56 ISNGAVAVVGEAEYDC----LPVPYIKVQDARQALGNLAKTLYCDPSKMHNMIGITGTNG 111 Query: 119 KTTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLT---LARMPVDVDFGIFE 166 KTTT M+ + ++ + P + + +D + Sbjct: 112 KTTTAYMVKHIFQTASESCSLFSTVSNFVNGTELMSTATTPDILELNKMLRMSMDKNVV- 170 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G + + + + T + HL +EE + KA +F+ L+K G +N Sbjct: 171 MEVSSHGLHQKRVEGIEFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLFKLLKKNGEAIIN 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + L + +++ SFG S+N D QL K S + +Q +E+ Sbjct: 231 SGCPWGRKLINQ-LKNKRQSVLSFGTSENDDLQLLSTK--DGVSKIRIQGSNVKLEIKMP 287 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H QN L + +V+ +A+ F G R Y Sbjct: 288 MPGNHNLQNALAAILCAYRAGVNVNDIKRAVESFPGVPG-----RFEEYYSQSVNFILDY 342 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P ++ + + ++ R + V G +S + L Sbjct: 343 AHTPDGLENLLETVKKL---NGNRIVHVFGFRG----NKDMTKRLAMLDISAKYCDKIIL 395 Query: 407 S-----GFHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + G + + L +S+ ++H + + + GD +V+ Sbjct: 396 TLDDLNGVALEKMILDLKKSVNYIGTNNIHLIIDRTRAIEYAWKNSIKGDRIVITG 451 >gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 482 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 94/476 (19%), Positives = 169/476 (35%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ IQ + + + G++IDSR +A F A++G DGH +I A++KG Sbjct: 1 MKLSELLKTIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + + +I V D A+ K+A A SK ++ +TG+ GKTT Sbjct: 61 AIAVLCED--MPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168 +L I + N+I P+TL R+ D + Sbjct: 119 ATLLYNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K N D Sbjct: 179 VSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DKNGLVMTQNTRS----RVYTYSLRSLSDFKGKILESHFEG----MLLDFNNRELAVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSIRSPKGITAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + S V ++ Sbjct: 347 TPDALVNVLNAIHDV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV+++ K Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKG 457 >gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM 2008] gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM 2008] Length = 494 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 79/481 (16%), Positives = 144/481 (29%), Gaps = 47/481 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+++ + + + ++ DSR++ F A+ G DGH+++ AV+ Sbjct: 1 MKQLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVES 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+V+ + S + V V+D A+ +I +TG+ GKTT Sbjct: 61 GAVAVLVSKPVEV---SSDVCVITVEDTRAAMMSCVPYFFDYPANSMRMIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167 T M+ L + IG+ + IG V + V+ G+ + Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225 +S V AV T + HL E A K Sbjct: 178 EVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGK 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + + I ++ + + S V G V Sbjct: 238 GAVINIDDAYGHRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAM 297 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + G N L +G + ++ KAL F GR + + Sbjct: 298 NTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHT 357 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + ++L E R I V G G + + ++ V+ Sbjct: 358 PDG-------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVY 406 Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + +KD L H + GD+V++ K Sbjct: 407 VTSDNPRTEDPIQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] Length = 488 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 95/445 (21%), Positives = 150/445 (33%), Gaps = 38/445 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR I + FFA+KG H DG FI A GA VV IG S+PV +D++ Sbjct: 24 DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNLY 80 Query: 93 GALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGV 149 AL +A A S A +I I TG+ GKTTT + ++ + + G+ Sbjct: 81 RALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNGI 140 Query: 150 PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 L M F + S +G + AV T + Sbjct: 141 VLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTRD 200 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E AK +F + + +++K A S + Sbjct: 201 HLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKGDQP 260 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A + E EV+ +G + V H +G +N L T+G + + +++T +K Sbjct: 261 AYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETVLK 320 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 + P GR + R F Y+ P ++ AI L ++ GR V+ Sbjct: 321 EAAKLMPPAGRMQIVRDDHGPIFAVD----YSHTPDAVTQAIKALEGLAEARGGRIWIVV 376 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS--IHVHYSE 428 G G L + V L+ + + E Sbjct: 377 GA----GGDRDHGKRPLMGQAA-CAADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE 431 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + DV++V K Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKG 456 >gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748] gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748] Length = 494 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 144/481 (29%), Gaps = 47/481 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+++ +Q I V I+ DSR++ F A+ G DGH+++ AV+ Sbjct: 1 MKQLQDIVKTLQTPHIEGNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+V+ + S + V V+D A+ +I +TG+ GKTT Sbjct: 61 GAVAVLVSKPVEV---SGDVCVITVEDTRKAMMACVPYFFDYPANSMRMIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167 T M+ L IG+ + IG V + V+ G+ + Sbjct: 118 TTHMIRHILKGQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225 +S V AV T + HL E A K Sbjct: 178 EVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGK 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + + I ++ + + S V G V Sbjct: 238 GAIINIDDEYGHRVIEKTTAPIITYSIDGKGTLNAHDVEMTPKSSRYTVSYDGNDYTVAM 297 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + G N L +G + ++ KA+ F GR + + Sbjct: 298 NTTGLFNVYNTLAAIGACLLEGISMEDIDKAMKTFSAVPGRFELIEEGQPFAVVVDYAHT 357 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + ++L E R I V G G + + ++ V+ Sbjct: 358 PDG-------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDIVY 406 Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + +K+ L H + GD+V++ K Sbjct: 407 VTSDNPRTEDPVQIVKDVEVGVKEGLREGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 485 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 85/496 (17%), Positives = 155/496 (31%), Gaps = 59/496 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T L + ++ I + + I+ +S+ I FFAIKG + DGH FI A++K Sbjct: 1 MKTIKQLCKGVKILQIVGNEEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 A ++V + I + V D A+ ++A K ++ +TG+ GKTT Sbjct: 61 KARVIVCQQ--LPEILPKEVTFLKVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGI--FEL 167 +L + K I + N V RM V+ G+ + Sbjct: 119 IATLLYHLFRNTKHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTHCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + + T + HL E + K + F+ L+K N Sbjct: 179 EVSSHGIAMHRIEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTLKKDAFALTNI 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + A E ++ + L+ E+ H Sbjct: 239 DDKNGNFMLQNTQAHKYNYALR--------TYADFKANILENAFSGLVLRIGQQEIWTHL 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N+L +L D + K +S P GR + + A N Y Sbjct: 291 IGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQYFISAGNITVIVD----YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + + I + V G + ++ V + Sbjct: 347 HTPDALQNVLETIKSIKAPSQHLLTLV-----GCGGNRDKGKRPIMANIATTMSDKVIFT 401 Query: 408 -----GFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVV-------- 448 + + ++ + + GD+++ Sbjct: 402 SDNPREEDPQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHET 461 Query: 449 ---VKS--SNSCGFYR 459 VK S+ Sbjct: 462 YQEVKGHRSHFDDLEE 477 >gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 485 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 78/453 (17%), Positives = 155/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI DSR I F A +G + DGH++I AV+ GA ++V+ + ++ Sbjct: 18 DRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V+D+ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLVEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITRIGTI 134 Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + + +++ + E+ L R +V A Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 193 LFTNLTQDHLDYHITMENYFQAKRKLFLKLKDINNSVINIDDKYGKRLYDEFIIDNPEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + +++++ + + +V +G N L +GIV + Sbjct: 253 SYGIDGGDLEG------DYLDDGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGIVLKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C + Y P ++ I I Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + + V L+ + +K Sbjct: 361 GNRIITIFG----CGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYFFEPDREKAIKLAINIAEKNDIILITG 449 >gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 463 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 80/453 (17%), Positives = 153/453 (33%), Gaps = 48/453 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 + DSR + F I+G DGH + AVQ GA V+ ++ SL++PV V Sbjct: 2 SLENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAEREL-----SLNVPVIIV 56 Query: 89 DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI---------KKTY 137 D A+ LA A + +I ITG+ GKTTT ++ L+ T Sbjct: 57 KDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTMYTK 116 Query: 138 ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + P + + V+ + E+ S H ++AV T Sbjct: 117 VAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEV--SSHALDEGRVHGCDFNVAVFT 174 Query: 191 TIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + HL ++E A G + + A+ I Sbjct: 175 NLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAAQIL 234 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ AD + + + + ++ V IG N+L +G Sbjct: 235 TYAIDNEADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAALASGL 294 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 +++ ++++S GR + + Y P S++ A+ + + + E Sbjct: 295 ELEAILESISTVKGVPGRFETVDAGQDFSVIVD----YAHTPDSLENALETVKEFA---E 347 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPR 420 GR V+G G+ ++ +A++ V+ S + + +P Sbjct: 348 GRIFVVVG---CGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAGVPE 404 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + GDV+++ K Sbjct: 405 GNYTMIA-DRKEAIAYSVGAAGKGDVILIAGKG 436 >gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus halodurans C-125] gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus halodurans C-125] Length = 486 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 89/492 (18%), Positives = 158/492 (32%), Gaps = 64/492 (13%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 P ++ I +DSR + FF IKG DGHD+ AV GA VV + Sbjct: 17 IHEGNPD--IHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPL--- 71 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135 LS+PV V D A+ ++A +I +TG+ GKTT ++ + K Sbjct: 72 --ELSVPVVVVRDSRRAMAQVATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGK 129 Query: 136 TYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 IG+ IG + +S Sbjct: 130 MTGLIGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +AV + + P HL +E AK + LN DD Sbjct: 190 CDFDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADFAEM 249 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + A + ++G ADFQ + S + E+ + ME+ H IG N+L Sbjct: 250 TIAQVV----TYGIENEADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLA 305 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + K+L GR + + FT+I + Y P S++ + Sbjct: 306 AAAAAYVSGVPLQEIKKSLEEVKGVAGR---FETVKHDQPFTVIVD-YAHTPDSLENVLK 361 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------- 411 + +++ +G V+G G + ++ + + + Sbjct: 362 TVGELA---KGDVRVVVG----CGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMD 414 Query: 412 --LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS--------SNSCGF-Y 458 ++ ++ E + D++V+ K + F Sbjct: 415 ILRDMEQGAKGDSYLMI-EDRKEAIFKAIELAKEDDIIVIAGKGHETYQQFRDRTIDFDD 473 Query: 459 RLI--NLLLEEF 468 R++ + E + Sbjct: 474 RIVAQQAIKERW 485 >gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase [Alistipes shahii WAL 8301] Length = 484 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 167/474 (35%), Gaps = 44/474 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L+ + + G+ DSR++ P + FFA+ G DGHD+I AV+K Sbjct: 1 MKKLTDILKNTPVREVCGDTAAAIGGLVYDSRAVKPGDCFFAVPGTQSDGHDYIPIAVEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA +V + + + + V D GA+ +A A ++ ITG+ GKTT Sbjct: 61 GAAAIVCER--MPADAAEGVAYVLVGDSAGAMADMAAAFYDYPSRELKLVGITGTNGKTT 118 Query: 122 TKEMLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167 T +L + ++ P + R D + Sbjct: 119 TATLLYDLVRAMGYKAGLISTVVYKIDGREVEATHTTPDSIRLNAMMREMADAGCAYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S ++ T + + + I HL E AK F+GL K N Sbjct: 179 ECSSHAIVQERTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGLPKGAFALTNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A + ADF+ + + + + + Q Sbjct: 239 DDRNGRVMVQNTAAAVSA----YSLRAMADFRCKIVEMHLDGMLLRIDGQELW----VGL 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G A N+L G ++L + ++ LS+ H GR ++ R A T Y Sbjct: 291 LGRFNAYNLLAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKIRAANG----TTAIVDYA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ I + +I G+++ V+ G+ ++ ++A + Y + V+ S Sbjct: 347 HTPDALENVIQTIEEIR--TPGQQLIVVCGCG--GDRDRTKRPEMAAIAVKYATTAVFTS 402 Query: 408 G----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D L GD+++V K Sbjct: 403 DNPRHESPEAILDDMVAGLEPGARYLRIADRAEAIRTAVMLSRPGDIILVAGKG 456 >gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 482 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLLQ IQ I + G++IDSR I F A++G DGH +I A+ KG Sbjct: 1 MRLSDLLQTIQPVRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + I V D A+ K+A SK +I +TG+ GKTT Sbjct: 61 AVAVLCEE--LPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + + VP D + Sbjct: 119 ATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ L K N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + S V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 457 >gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 502 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 80/478 (16%), Positives = 145/478 (30%), Gaps = 42/478 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + + +I + + DSR+I P F + G + DGHD+I HA+Q G Sbjct: 1 MNLKSLTERLILKTITGSTAVEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ ++ G +I V D L LA + + +I ITG+ GKTTT Sbjct: 61 AVAIMAEKELPELPG--NITRITVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168 M+ L+ + IG+ IG V L Sbjct: 119 THMVDKVLNDSNRKTGIIGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLE 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V T ++ HL +E + K +F L + Sbjct: 179 VSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKV 238 Query: 229 DSFFELLKAKSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + I ++G AD + + + V+ S + Sbjct: 239 VLNADDAASSYYGKRTSAQIVTYGIHNPADVRALHIQNTGDGCRFIVETPWGSSDFTMKV 298 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H N L + + + +L F GR ++ F ++D ++N Sbjct: 299 YGVHNVYNALAAITTCLLEGIPIQEIRNSLQDFAGVHGR--FQEIKTDRSFRVVVDYAHN 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406 + + L G+ I V+G E + ++ +V Sbjct: 357 PDG-----LKATLLSAKEITSGKMICVMGCRGE----RDRLKRPIMADIAASYSDYVLFT 407 Query: 407 ----SGFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H+ D D +++ Sbjct: 408 TDNPFSEDPEQIIAEMLGGLSSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITG-RG 464 >gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 484 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 94/474 (19%), Positives = 154/474 (32%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L+ +I+ I + G++IDSR I F A+KG DGH +I A++KGA Sbjct: 3 ISKLISSIKPIEIIGDANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 V+ + + + + V D A +A + + +TG+ GKTT Sbjct: 63 AVLCED--LPEVKAPHVTYIQVQDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + +Y VP V+ + S Sbjct: 121 LLYNLFRKLGYKCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL E AK F+ L KT N DD Sbjct: 181 SHAIAQKRIAGLHFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDSLPKTSFAITNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + A T+ ++ ADF+ R + E + L+ EV IG Sbjct: 241 NGMYMVQNTKA----TVKTYSARSLADFKARIIECHFEG----MYLEIDGREVGVRFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L G +L + + ALS GR + + +A Sbjct: 293 FNVSNLLAVYGASVMLQQQPENILLALSTLQSVSGRLEPIYSPEGFTCIVDYAHTPDALE 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + A VL +G+G+ I V G G L ++ V L+ + Sbjct: 353 NVLLAIHDVL-----NGKGKVITVCGA----GGNRDKGKRPLMAQEAVKQSDKVILTSDN 403 Query: 411 VL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K+ L + S GDVV+V K Sbjct: 404 PRFEDPQDILNDMKEGLNNAQLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKG 457 >gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] Length = 477 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 159/480 (33%), Gaps = 60/480 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + HDL GI P + ++ DSR + F A G DG +I A Sbjct: 1 MTILASLHDL---------GIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQA 47 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 + GAG V+ + + L V D+ ++A ++ +TG+ G Sbjct: 48 IANGAGAVLWEAEGFSWPTDLQAVNLPVKDLRKQAGEIADEFYGHPSRALWMVGVTGTNG 107 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------- 164 KT+ + LT L+S+++ A IG+ N G P LA I Sbjct: 108 KTSCTQWLTHCLNSLQRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGA 165 Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G + + V +AV T + HL ++ A+AK + E Sbjct: 166 VATAMEVSSHGLDQGRVNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLKLA 225 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D L+A ++ D M V + Sbjct: 226 VLNAEDAYGLTFLQA---LRSEGRPVLSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVT 282 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G A N+L L + + ++ A +A++ P GR + N +I Sbjct: 283 LQASVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGR--MEQYGGNAMPVVVI 340 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + + L + G+ V G G + + ++ Sbjct: 341 DYAHTPDALE-----NALQALREQTRGKLWCVFG----CGGDRDAGKRPMMGAIASRLAD 391 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 HV ++ + + ++ R+ + GD+V+V K Sbjct: 392 HVVVTSDNPRSENPDTIIADITASMGRNHQIMV--DRRAAIAHAIEQAAPGDIVLVAGKG 449 >gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] Length = 483 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 74/476 (15%), Positives = 154/476 (32%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL+ ++ + + G++IDSR I F AI G DGH FI A++ G Sbjct: 1 MKLNELLKNVEVLNTQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + + V + ++A K ++ +TG+ GKTT Sbjct: 61 ATAVLCEK--LPEEQDPKVTFVQVASTESCVGEVATQFYGDPSRKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y +P VD + Sbjct: 119 ATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + ++ + T + HL E AK F+GLEK N D Sbjct: 179 CSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDGLEKDAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ A + ++ ADF+ + + E ++++ + ++ + Sbjct: 239 DKNGMVMVQNCKA----NVKTYSTRTMADFKAKIIECHFEGMYLDINGKEVGVQFIGKFN 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ + + L + + R + +T I + Y Sbjct: 295 VSNLLAVYGAAVMLGK-------KPEDILLIMSTLKSVNGRLEPIHSPEGYTAIVD-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ ++ + ++ +G+G+ I V G G + ++ V ++ Sbjct: 347 TPDALENVLNAIHEV-LNGKGKVITVCGA----GGNRDKGKRPIMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V GDV+++ K Sbjct: 402 DNPRFEEPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKG 457 >gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] Length = 483 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 153/474 (32%), Gaps = 51/474 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++L++ I+ I ++G++IDSR I P F AIKG DGH++I A+ GA Sbjct: 4 NELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125 V+ + I V A+ K+A +I +TG+ GKTT + Sbjct: 64 VLCEKAPKEPL--SDITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTTIATL 121 Query: 126 LTIALSSIKKTY---ACIGSYNNHIGVPLTLA------------RMPVDVDFGIFELGMS 170 L + + + +Y +P +M +F S Sbjct: 122 LYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECSS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 H + + + T + HL E +AK F+ L K+ N DD Sbjct: 182 HA-IAQKRIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDHLPKSAFAITNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A T+ ++ ADF+ R + + + L+ EV IG Sbjct: 241 NGMVMVQNTKA----TVKTYSVRTAADFKARIIECHFQG----MYLEIDGQEVGVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L +L + + A+S H GR + +A Sbjct: 293 FNVSNLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLHSPQGFTAVVDYAHTPDALK 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +L+ G+G I V G G L ++ V ++ + Sbjct: 353 ------NVLLAIHEVDGKGHVITVCGA----GGNRDKGKRPLMAKQAVQLSDKVIITSDN 402 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L V DVV+V K Sbjct: 403 PRFEEPQDIINDMLAGLDAQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKG 456 >gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl- tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Waddlia chondrophila WSU 86-1044] gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl- tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Waddlia chondrophila WSU 86-1044] Length = 813 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 93/448 (20%), Positives = 160/448 (35%), Gaps = 31/448 (6%) Query: 9 DLLQAIQGHSIGIVPQGF--VNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL S G ++ I ID+R I A F A+KG DGH F+ GA Sbjct: 5 DLRNWSGFISAGGDSNRPALIDQIVIDTRRIYASNALFAALKGQRQDGHSFVS---GSGA 61 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +V S+ VDD L A ++A + R + + +IA+ GS GKT K++ Sbjct: 62 KFALVEKHWEGPADGPSL--LKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDL 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L LSS + S+N+ +GVPL+L + I E G SH GE+ L ++RP Sbjct: 120 LRHLLSSSFTVASSPESFNSQVGVPLSLLGAAKAHEQVIIEAGFSHPGEMARLCKIIRPS 179 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 ++T + HL E+IA F D+ + LL + Sbjct: 180 HIILTHVGNKHLHTIGSKEQIAQE-----------MCHFSLSSDASWTLLPKDPILSPLP 228 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 Y + + + + + ++ N+ L + Sbjct: 229 KPYYWDTPQPNLPHASFHENSKAITVQFPKGDAHTILRPLGMSYILDLINIG--LKAAYL 286 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L + AL + P +Q T I+E+Y +P S+ A+ SP Sbjct: 287 LGVPEKQIVDALKTYQP---EPMSTEIWKSQNGATFINETYCEDPQSLDCALRRFDFHSP 343 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPRSIH 423 G++ + + + + + E + + L + Sbjct: 344 K--GKKTLLFSGIKQ---NDPALDARIGEAIGNSMPDTLMLIEPSFQLEHAVKTIAPQTA 398 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + T++ S+ D+++VK Sbjct: 399 IRHFSTVEAALKDHAGSMRPEDILIVKG 426 >gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] Length = 477 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 159/480 (33%), Gaps = 60/480 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L + HDL GI P + ++ DSR + F A G DG +I A Sbjct: 1 MTILASLHDL---------GIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQA 47 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 + GAG V+ + + L V D+ ++A ++ +TG+ G Sbjct: 48 IANGAGAVLWEAEGFSWPADLQAVNLPVKDLRKQAGEIADEFYGHPSSALWMVGVTGTNG 107 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------- 164 KT+ + LT L+S+++ A IG+ N G P LA I Sbjct: 108 KTSCTQWLTHCLNSLQRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGA 165 Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G + + V IAV T + HL ++ A+AK + E Sbjct: 166 VATAMEVSSHGLDQGRVNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLKLA 225 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D L+A ++ D + V + Sbjct: 226 VLNAEDAYGLTFLQA---LRSEGRPVLSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVT 282 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G A N+L L + + ++ A +A++ P GR + N +I Sbjct: 283 LHAAVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGR--MEQYGGNAMPVVVI 340 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + + L + G+ V G G + + ++ Sbjct: 341 DYAHTPDALE-----NALQALREQTRGKLWCVFG----CGGDRDAGKRPMMGAIASRLAD 391 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 HV ++ + + ++ R+ + GD+V+V K Sbjct: 392 HVVVTSDNPRSENPDTIIADITASMGRNHQIMV--DRRAAIAHAIEQAAPGDIVLVAGKG 449 >gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 6_1_27] gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 6_1_27] Length = 496 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 47/478 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+++ + + + ++ DSR++ F A+ G DGHD++ AV+ GA Sbjct: 6 LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAV 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+V+ + S + V V+D A+ +I +TG+ GKTTT Sbjct: 66 AVLVSKPVE---ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNGKTTTTH 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMS 170 M+ L + IG+ + IG V + V+ G+ + +S Sbjct: 123 MIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVS 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228 V AV T + HL E A K Sbjct: 183 SHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAV 242 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + I ++ + + S V G V + Sbjct: 243 INIDDAYGHRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTT 302 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +G + ++ KAL F GR + + + Sbjct: 303 GLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDG 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++L E R I V G G + + ++ V+++ Sbjct: 363 -------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVYVTS 411 Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +KD L H GD+V++ K Sbjct: 412 DNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKG 469 >gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] Length = 487 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 152/474 (32%), Gaps = 49/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + S + + I DSR + F A+ G DGHDFI A+ GA Sbjct: 4 LKDILYKVSLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAK 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + S I V + A+ +A K ++A+TG+ GKTTT Sbjct: 64 AVIFEK--LPSELQKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTTTVT 121 Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + + + N +P T + ++ + S Sbjct: 122 LLHQLFMRMGYSTGLLSTVENKINEEVIPATHTTPDSVSIQALLKQMLEAGCTHCFMEAS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ ++ AV T I+ HL +E AK ++F+ L K +N DD Sbjct: 182 SHAIVQERIAGLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDELPKAAFALVNGDDK 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ +FG A+F+ + E + Sbjct: 242 RGMVMLQNCKGS----HQTFGLKTPAEFKAKIISNTLEGLE-------LDINGTLIWFMM 290 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N LG++ + + L +G R+ G ++D ++ + Sbjct: 291 IGAFNAYNLLGVLGTAVLLGEEEEEVLRELSGIKGARGRFDRISIGGVTAIVDYAHTPDA 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL I+ G + + G + +++ V L+ + Sbjct: 351 -----LDNVLKTINGVRTGVEQLI--TIVGCGGNRDKTKRPIMAKIAVQESDKVILTSDN 403 Query: 411 VL-----ALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + I V E GD++++ K Sbjct: 404 PRFEDPMDILKDMQTGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKG 457 >gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] Length = 485 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 161/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L +IQ I + G+ IDSR + F A+ G DGH +I AV+KG Sbjct: 1 MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A ++ + + + + V D A+ K A + ++ +TG+ GKTT Sbjct: 61 ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168 +L I + N+I P+TL R+ D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ R + E + L + E+ I Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GD ++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKG 457 >gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis 3_1_12] gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] Length = 485 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 93/476 (19%), Positives = 166/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L +I I + G+ IDSR + F A++G DGH +I A++KG Sbjct: 1 MKLKEILTSIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A ++ + + + I V D A+ K+A A SK ++ +TG+ GKTT Sbjct: 61 AIAILCEE--LPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168 +L I + N+I P+TL R+ D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ L K+ N D Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKSSFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R Y Sbjct: 291 GRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITS 401 Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] Length = 493 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 168/480 (35%), Gaps = 47/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL + ++ +++DSR ++P F AIKG DG FI A+++ Sbjct: 1 MMQLSELL----LPWCDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQ 56 Query: 64 GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117 GA V+ + D G++ + V +D + L+ +A A + ++ ITG+ Sbjct: 57 GAVAVIADADKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTN 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE 166 GKTT +++ + +++ A +G+ N G P+ + + +++ + Sbjct: 117 GKTTISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAK 176 Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 L S G ++ + + AV T ++ HL + A AK +F +I Sbjct: 177 LTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNSI 236 Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D + LK HA+ + + +E + + ++ Sbjct: 237 INGDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSISSDWGNVA 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG A N+L+ + L D+ + S + GR + + Sbjct: 297 FSVPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATDNKAKVVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A ++ + H EG+ + G G + + + Sbjct: 357 AHTPDALDKAL-------QALRVHCEGKLWCIFG----CGGDRDTGKRPIMASIVEQQAD 405 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + LS + + L + H F S + D++++ K Sbjct: 406 AIILSDDNPRSEEPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKG 465 >gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 489 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 79/462 (17%), Positives = 153/462 (33%), Gaps = 56/462 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL+ + I +S DSR + F IKG + DGHD+I A++ G Sbjct: 1 MKLYNLLKDLDYEIISGSVDIDARSVSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +V+ ++ I + +I V V + AL +A ++ +TG+ GKTT Sbjct: 61 ALAIVIQEEI--KIDNENITVIKVRNTKLALASIANVFYNEPSKEINLVGVTGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-------------------MPVDVDFG 163 + L S KK A IG+ + + + Sbjct: 119 IHYIKDILESYKKRTAIIGTLGYEFNKEKASIQKVNPTTPESLELQGLFREFINKGAENI 178 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ S L + R + + V T ++ HL +E + K ++ Sbjct: 179 VMEVTSSALAKQRVEYCDFK--VGVFTNLSQDHLEEHGTMENYKNEKIKL-------FKK 229 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------QSWMEVQLQ 277 + + + + I ++G +K AD + + + ++ + Sbjct: 230 CELGVINLDDGIAEEIIQKASCKILTYGINKEADIRATEIRYRNDCIIFKIKFRDIKWRW 289 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 +V + G N+L +G L D+ I LS GR + + LN+ Sbjct: 290 WCITDVKVNIPGKITVYNVLAAIGACIGLGMDMGDIISCLSNLRHVPGRLEMIKNNLNKN 349 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + +A +L +G+ I V G G + + + Sbjct: 350 IIVDYAHTPDA-------LERLLMMARETTKGKLITVFG----CGGDRDKSKRKVMGMAA 398 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + ++ + + E ++ I S Sbjct: 399 GILSDYCIITSDNPR-------TEDPIKIIEDIEEGMEVINS 433 >gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] Length = 495 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 73/482 (15%), Positives = 139/482 (28%), Gaps = 55/482 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + + GI DSR + + F + G DGHD+ A+ GA Sbjct: 3 LQQLASLLAVSRVVGDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 +VV ++ + +P V D A+ LA +I ITG+ GKTT Sbjct: 63 ALVVEREL-----DVPVPQLVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITY 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 ++ + IG+ G V + E+ Sbjct: 118 LIEKIMKDAGVNTGLIGTIQMRYGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEV- 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA----KAEIFEGLEKTGTIF 224 SH E + A+ T + HL + +EE +A + + + + Sbjct: 177 SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDS 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + A + ++G K +D Q S+ + V ++ Sbjct: 236 KYAVLNADDPASSYLQAQTAAQVITYGVEKESDVQASSITIGSKGTSFHVSTFKGDTDIE 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + + + ++L +GR + Sbjct: 296 LRMVGKFNVYNALAAITAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAH 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + +VL + G+ V G G L ++ H Sbjct: 356 TPDG-------LENVLRTVKEFAVGKVWCVFG----CGGDRDRTKRPLMGKIAARYSDHS 404 Query: 405 WLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV-- 449 +++ + ++ L + E DVV++ Sbjct: 405 FITSDNPRTEDPKVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] Length = 483 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 150/476 (31%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++L+ I I + G++IDSR I F AI+G DGH FI A++ G Sbjct: 1 MKLNEVLKNITPIKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+ + S + V+ A+ K+A K ++ +TG+ GKTT Sbjct: 61 ADAVLCEE--LPEKLSDHVTYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + + VP V+ + Sbjct: 119 ATLLYNMFRKFGYKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + ++ + T + HL E +AK F+GL K N D Sbjct: 179 CSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ ADF+ R + E ++E+ + ++ + Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIRSMADFRARILECHFEGMYLEIDGREVGVQFIGKFN 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ + + D+ + L + + ++ Sbjct: 295 VSNLLAVYGAAIMLGK-KPEDILLVLSTLHSVSGRLEPIHSPEGFTAIVDYAHTPDALAN 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ + G+G I V G G L ++ V ++ Sbjct: 354 VLNAIHEVLD--------GKGHVITVCGA----GGNRDKGKRPLMAQEAVRQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L V GDVV+V K Sbjct: 402 DNPRFEDPQEIINEMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457 >gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] Length = 507 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 83/489 (16%), Positives = 148/489 (30%), Gaps = 54/489 (11%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 D+L G V G++ DSR + P + F A+ G DG ++ AV + Sbjct: 1 MKLTDVLAGCGAEQVSGGRSSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA VV + GS +P F V AL +A R + T++ +TG+ GKTT Sbjct: 61 GAVAVVSEKPV----GSSQVPFFKVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTT 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNNH-----------IGVPLTLARMPVDVDFGIFE---L 167 T +L ++ + IG+ PL L R+ ++ E + Sbjct: 117 TTYLLEAISAAAYASTGVIGTLGYKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVM 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ H + A T + HL IEE AK +F + + Sbjct: 177 EVSSHALVQERVHGLTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAVVN 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + F + + + ++ + V Sbjct: 237 GDDTYASRIYNELRGQKRMAWKFSRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRL 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G H +N+L G+ + GR +R + ++ + + Sbjct: 297 VGPHNLENILAATGVALGAGIARRDVQTGIERMGGLPGRMERVENYMPGPAPAVLVDYAH 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + A L +GR I V G G L + V ++ Sbjct: 357 TDDA----LKRALEASRTLAKGRVIVVFG----CGGDRDKGKRPLMGTAAAEGADLVVVT 408 Query: 408 G-----FHVLALKD-----------------ALPRSIHVHYSE-TMDGLFLFIQSSLVDG 444 + + + + + Sbjct: 409 SDNPRTEDPAEIIEQVTPGLEKGGLRRISAGKAKSGEKGYLVDADRRAAIETAVGLARED 468 Query: 445 DVVVV--KS 451 DVV+V K Sbjct: 469 DVVLVAGKG 477 >gi|319795793|ref|YP_004157433.1| mur ligase middle domain protein [Variovorax paradoxus EPS] gi|315598256|gb|ADU39322.1| Mur ligase middle domain protein [Variovorax paradoxus EPS] Length = 1028 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 117/478 (24%), Positives = 202/478 (42%), Gaps = 40/478 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQ-EAF-------------FAIKGP 49 WT ++ + G + +G++ S + F +KG Sbjct: 573 WTASEMARVTGGEWVVRPEDGWRASGVTQRS-FMRKGRVVFENQTRPSKTPLAAVTLKG- 630 Query: 50 HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 V + A V+ +PV V +VL A+ +L AR Sbjct: 631 -----------VLQPAAAVLCTDP--KPHLDKRVPVLKVPNVLQAVLQLGEHARTEFTGR 677 Query: 110 IIAIT-GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 + + G +T M+ AL+ + G+ + G+ L MP + + E+G Sbjct: 678 VCGVLGHGTGSSTVAAMMAGALTVWGEVGQPEGNISLPSGIAWNLTCMPRHAAYWVLEMG 737 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + LVRP + V+T ++ A + + A A IF+G+ + LN D Sbjct: 738 TSH---MPASSQLVRPSLVVVTGLSAASQKHRGPSDAAARMDARIFQGMAAGDNVVLNRD 794 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 F + + A ++ + ++G+ ++AD +L + ++ Q+ G+ ++ + Sbjct: 795 MPEFPIFAEAATAHQLQIV-TYGEHEDADVRL----LAFDHGEVQAQVAGEPFQLRLNAP 849 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G HM + LG + L + A++ + F P GRG + + G F LIDE+Y+A Sbjct: 850 GRHMGAAAVAALGALQSLRLPLAAAVEPFAHFEPPGGRGALHTIHIGGGSFKLIDETYDA 909 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP+SM+AA+ +LSQ R +A+LGDM E+G +Q H+DL L V L G Sbjct: 910 NPSSMRAALELLSQAPCEPARR-VAILGDMQELGPAAQRHHLDLEAELLASQPDRVLLCG 968 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + AL ++ + H+ + L + L GD V+ KSS G RL +L Sbjct: 969 PLMRALHASIRTKVRSHWFVDVSDLSTALGGLLQPGDWVLAKSSAGVGLSRLARVLKA 1026 >gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1] gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1] Length = 484 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 145/469 (30%), Gaps = 41/469 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + + V+ I DSR++ + F I G + DGHDFI + +G Sbjct: 1 MKLKQLLNEMNYQVLQGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVINRG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++VV D+ I V + AL L+ A T+I ITG+ GKTTT Sbjct: 61 ARVIVVEHDVPF---QEGITYIRVKEARLALALLSCAFFEHPSRQMTVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKT---------YACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168 M+ L K P + R V+ + Sbjct: 118 SYMMESILEKANKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQMVECGCEYCVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + + V T ++P H+ + + + Sbjct: 178 VSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEHEH-----HSFEHYMACKKMLFQMCKVGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + I ++ + +D + + + V Q + + Sbjct: 233 FNRDDEHYEDMIKGAKCDIKTYSLHQQSDLKASQIHLSQGTGTLGVSFQTSGLIDANFET 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L + + RG+ + Q + +ID ++NA Sbjct: 293 DIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKVRVRGRVEIVPVGQKYTVMIDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 S ++ + + PH +L G D+ E+++ Y + + Sbjct: 353 --LSFESILQTIMDYQPHR------ILCVYGAGGHRDVKRRYDVGEIVAKYKAFSILTAD 404 Query: 408 ---GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448 G +V + + + IH E + DV++ Sbjct: 405 NPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVIL 453 >gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 74/473 (15%), Positives = 143/473 (30%), Gaps = 43/473 (9%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+A+ + P+ + +++DSR A + F AI G DG +I A+ +G V+ Sbjct: 6 LRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIA 65 Query: 71 NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 D A G S IPV + + L+ LA + +I +TG+ GKTT + Sbjct: 66 EADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTITQ 125 Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170 +L + + + N +G + +S Sbjct: 126 LLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAMEVS 185 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ + + T ++ HL +E AK +F I D+ Sbjct: 186 SHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFSTHHSGEKIINADDEV 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIG 289 L A+ + ++ + + + + + +G Sbjct: 246 GQRWLAKSPDAVAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLESRLMG 305 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L+ + L +D K S P GR + + + +A Sbjct: 306 AFNVSNLLVAAATMLALGYPLDVLCKTSSQLQPVCGRMEVFTAPGKPTVVVDYAHTPDA- 364 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 L H +G+ V G G L ++ V ++ Sbjct: 365 ------LEKALEAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQYADRVVVTDD 414 Query: 410 H---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + H DV++V K Sbjct: 415 NPRSEEPRAIMADILNGMLDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKG 467 >gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002] gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002] Length = 1046 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 207/473 (43%), Gaps = 39/473 (8%) Query: 5 WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSI---APQEAFFAIKGPHYDGHDFILHA 60 W+ + QG + P + NG+ I + A G Sbjct: 571 WSASVIQSVTQGTWLTPPPSEWTANGLCI---YVPAMQAGNVVVARVGET---------- 617 Query: 61 VQKGA------------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108 +G V+ + V + +PV V D A+ + AR + Sbjct: 618 -DRGIPVPVIRRMHTRPVGVITSDPDVQAQLK-DLPVLHVADTGKAILAMGSYARKQMSG 675 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 ++A+TGS GKTT ML AL++ +T A + N G+ LA + D + E+ Sbjct: 676 AVLAVTGSAGKTTLVAMLADALNAYGQTAASAFNANLPHGLSWNLASINWDTPHVVLEVA 735 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +G + + RP+I++ T I PAHL S I +IA K+ IF G+ + LN D Sbjct: 736 ---VGNMGKSALIARPNISIFTNIQPAHLGKSSTITDIARTKSMIFRGMSAGSIVILNRD 792 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 +E + + + I ++G + +DFQL + V+++G+ + Sbjct: 793 MLEWETVYQAAMEQDL-NIVTYGTTAQSDFQLVDHDAL--RQSATVRIRGRDITYPIGAA 849 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G HMA N + L V L ++ A++ ++ F GRG+ L+ T+ID +YNA Sbjct: 850 GLHMALNSVAVLAAVLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNA 909 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 NP SM+AA+ L + +AVLG+M E+G + H DLA V+ I V++ G Sbjct: 910 NPGSMQAALEHLRDMKHARRR--VAVLGEMAELGPEAPMLHADLAAVVERCGIDRVYVMG 967 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 + LP + ++ ++D L + L D DVV++K SNS G + ++ Sbjct: 968 ELYTGFWEQLPAARRGRHTNSLDELKSALSEELADEDVVLLKGSNSTGIHHIV 1020 >gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 488 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 98/460 (21%), Positives = 169/460 (36%), Gaps = 40/460 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + I DSR + P FF I+G DGH ++ AV +GA ++V + ++ Sbjct: 6 ELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKNLNY 65 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134 I F V++ L LN+++ +K II +TGS GKT M+ A++ Sbjct: 66 YHDK--IIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYC 123 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHL 181 + + G + + + + S G Sbjct: 124 SSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDG 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + +IAV+T I HL E+ AK ++FE ++ TG LN DD F LK + Sbjct: 184 INFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG 243 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++G +D + + + S ++ +G + V I N+L G Sbjct: 244 ----RILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTG 299 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + D I A+ P EGR + + + S AI Sbjct: 300 VLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVIIDYCQ-----HISNYEAIFEYV 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 G GR IAVLG G+ + +L ++ + Y + HV L+ G V + Sbjct: 355 DGVRQGHGRIIAVLGAP---GKRNYKLRKELGQLANRY-LDHVILTQLDDRGEDVYEICK 410 Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + I+ E+ D++++ K Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKG 450 >gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] Length = 478 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 138/455 (30%), Gaps = 36/455 (7%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + + G++ DSR + P F A+KG +DG F+ AV +GA ++ + I Sbjct: 9 LAENGETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFVPQAVAQGAAAILSD----GGI 64 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-- 136 G++S+P D+ AL A ++A+TG+ GK++T + S Sbjct: 65 GAVSVPHVMADEPRRALALAAKRFYGEQPEFVVAVTGTNGKSSTVDFARQIWSRAGIKAA 124 Query: 137 -----YACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGMSHLGEIRFLTHLVRP 184 A + IG + + + S G + V Sbjct: 125 SMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALARQGVTHCAMEASSHGLEQHRLDGVDL 184 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + HL + +E AK +F L G + DS ++ Sbjct: 185 SAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAPRGIPAIVNADSDHREAVEETARKAG 244 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + SFG + + + Q+ + + IG N L + Sbjct: 245 LQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVEQKPIELPLIGEFQTLNALAAAALCL 304 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + L+ P +GR + Y P + + + Sbjct: 305 SLGMEFPAVADGLANLKPVKGR---LEFVGKTETGAAVFVDYAHTPDGLDVLLRA---VR 358 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDAL 418 PH GR + G G + + ++ V ++ + L Sbjct: 359 PHTAGRLKVIFG----CGGDRDAKKRPIMGEIASRQADDVIVTDDNPRSEDPAKIRASVL 414 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L GD +V+ K Sbjct: 415 GGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKG 449 >gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 79/463 (17%), Positives = 153/463 (33%), Gaps = 46/463 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P + + +DSR++ F A++G DG +I A+ KGA V+ T+ S Sbjct: 14 APNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQHLST 73 Query: 82 ----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135 +P+ + L+ LA K T++ +TG+ GKTT ++L + + Sbjct: 74 KIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQLLAQWTTLLGH 133 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLT 179 A +G+ N G+ + + + +S G ++ Sbjct: 134 RSAVMGTIGN--GLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSHGLVQHRV 191 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +A+ T ++ HL +E A AK +F L I D L+ + Sbjct: 192 EALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQIINADDSVGQTWLQEQP 251 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 +A+ + F + + + + + ++ + E+ IG N+L+ Sbjct: 252 NAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALIGQFNVSNLLLV 311 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L D++ +K + GR T I + + A Sbjct: 312 FATLLSLGYDIEKLMKTVPQLTGVCGR---MERLSASNQPTAIVDYAHTPDA----LEKA 364 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L H +G+ V G G + ++ HV ++ + Sbjct: 365 LQAARLHCQGKLWCVFG----CGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRTESAAQI 420 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + HV D + DVV++ K Sbjct: 421 VQDILAGFEHPQHVEVCHARDQAIIQALQKADSDDVVLIAGKG 463 >gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 492 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 78/489 (15%), Positives = 171/489 (34%), Gaps = 53/489 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 P+ + I+ DSR P FF +KG +DGH F+ A++ GA VV + ++V Sbjct: 5 QLFKQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEELVH 64 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 I F V+DV+ LN +A + +TG+ GK + +++ L+ K Sbjct: 65 Y--EEGILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAKIIQEVLNPDK 122 Query: 135 KTYACIGSYNNHIGV---PLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHL 181 T + V PL +D+ + E+ +S +G + Sbjct: 123 ATGNIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVEQKRVQS 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V A+ T + HL ++ AK + F+ L++ N DD + + S A Sbjct: 183 VHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEKACAITNIDDPYGLKMVEDSEA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + ++G S+ A + +R+++ + + +++ + ++ + + N+ + Sbjct: 243 ----RVVTYGMSEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFNLMNLTAAIV 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++ + + EG + + N I + + VL Sbjct: 299 ALHESGVKMELIQERVKFLTQMEGHMQMIQEGQNFNVLVDIAHTVDG-------LSRVLE 351 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKD 416 + ++ + +G+ + + ++ Y + L+ + + Sbjct: 352 YATSITPKNCRIIVVN-GSVGKRDKIKRQKVGNLMDQY-CDMIILTEEDPRNESPREIAE 409 Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYR------------ 459 + + I D V+V K N R Sbjct: 410 EIAKGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKG-NQKFMERDIGRCSYQGDVI 468 Query: 460 LINLLLEEF 468 ++ +L+++ Sbjct: 469 IVKEVLKKY 477 >gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 154/477 (32%), Gaps = 50/477 (10%) Query: 5 WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 DL++ I + + I+ +S++ AF IKG DGH++I A+Q Sbjct: 1 MKLKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYIDEAIQN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA LVVV S I + AL ++ +I +TG+ GKT+ Sbjct: 61 GACLVVVEEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166 T M+ L + + IG+ N IG + +M + + Sbjct: 121 TTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQMKNEGVDSVV- 179 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S F + + V T + HL +E +AK ++F +K + Sbjct: 180 MEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMSKKRVVNADD 239 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + ++ K +A R K ++ E+ G+ E+ + Sbjct: 240 RWGKRIIEM--------YPDSVTYAKDSDAQVCARNIKLFVNKNQFELWYNGEKEEITLN 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L L +DT K L GR + + Sbjct: 292 IPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIVESNEKFTIVIDYAHTP 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++++ + EGR++ + G G + ++ V + Sbjct: 352 DG-------LLNLMKTVDEVAEGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIV 400 Query: 407 SGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + ++ + + + D +V+ K Sbjct: 401 TSDNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGKG 457 >gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 485 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 79/453 (17%), Positives = 158/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI DSR I F A +G + DGH++I AV+ GA ++V+ + ++ Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +DD+ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITRIGTI 134 Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + + +++ I E+ L R ++ A Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVE--VLDFDYA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRLYDEFIVDNPEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++ + + S+ +++V+ + + +V +G N L +GI + Sbjct: 253 SYGIENGDLEG------DYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C + Y P ++ I I Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + ++ V L+ + +K Sbjct: 361 GSRIITIFG----CGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYFFEPDREKAIKLAINMAEKNDIILITG 449 >gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella bacilliformis KC583] gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella bacilliformis KC583] Length = 483 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 83/457 (18%), Positives = 148/457 (32%), Gaps = 41/457 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + + GIS +SR I P F A++G DG +I A+++GA +VV + D VA Sbjct: 14 NNLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE-- 71 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +LS+PV V DV L A T++A+TG+ GKT+ + + A Sbjct: 72 NLSVPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAAS 131 Query: 140 I-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPH 185 I + P+ L R+ + D G+ L S G + V Sbjct: 132 IGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGVNLA 191 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T + H+ + +++ AK +F+ L L D + + Sbjct: 192 AAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGR 251 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G+ R + S+Q + + L + Sbjct: 252 RALTIGRKGQFIKINRIEHRRSKQYVECRIENDVY----TFDLPLVGHFQVTNALMAAGL 307 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ K S +G R + Y P +++ + P Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAA---RP 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 GR I V G G L +++ V ++ + + Sbjct: 365 FTPGRLIVVFG----CGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQ 420 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A P ++ + + L GD +++ K Sbjct: 421 AAPGALEI---ADRSEAIYYAVGLLEAGDTLIIAGKG 454 >gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] Length = 499 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 75/468 (16%), Positives = 147/468 (31%), Gaps = 39/468 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L G + ++G+++DSR A F A+ G G FI A+++GA Sbjct: 14 LSEL-----GLTARGGADPLISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAV 68 Query: 67 LVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 ++ + + + V+D AL A T++A+TG+ GKT+ Sbjct: 69 AILTDAAGAKIAAQPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSV 128 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT-----------LARMPVDVDFGIFE--LGM 169 + ++ +G+ + + G+ + Sbjct: 129 ATFVRQIWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEA 188 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + V+ A T HL E +AKA +F + + + + Sbjct: 189 SSHGLDQCRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMN 248 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A + + S G+ D L + + + + + IG Sbjct: 249 DSRGAEMRAVAAARGQEVISIGR-GLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIG 307 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A+N+L+ G+V D L GR + N +D ++ + Sbjct: 308 GFQAENVLLACGLVIAGGEDPAAVFDTLPQLTTVRGRMEHAATRDNGA-SVFVDYAHTPD 366 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 + + + PH GR +A++G G + L + N V ++ Sbjct: 367 AVAT-----AIKALRPHVLGRLVAIVGA----GGDRDATKRPLMGRAAQENADVVIVTDD 417 Query: 409 ----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ L L GD +++ Sbjct: 418 NPRSEDPAVIRAAVRGGAPDALEVGDRAEAILRGVDMLSTGDALLICG 465 >gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] Length = 484 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + V+ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ E + G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L +D + LS GR + N + +ID ++ + Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] Length = 484 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ E + G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L +D + LS GR + N + +ID ++ + Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] Length = 484 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + V+ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ E + G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-GIEEFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L +D + LS GR + N + +ID ++ + Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 153 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 3/146 (2%) Query: 6 TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T + Q I G + G+SID+R I + I+G +DGH F+ AV+ G Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + D+ + ++PV V+D L AL LA R + +I +TGS GKT+TK+ Sbjct: 65 AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP 150 ++T L++ K G++NNHIG+P Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLP 148 >gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] Length = 483 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 157/469 (33%), Gaps = 37/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L I H+ + + ++G+++DSR++ F A+ G DG FI A KG Sbjct: 1 MNLARLANGI-AHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+ ++D V +PV D+ + K+A + T++A+TG+ GKT+ Sbjct: 60 AVAVLTSSDAVVE---TDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSIAS 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 L ++ A IG+ + + E + S Sbjct: 117 FLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASMEAS 176 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G +F VR T + HL +E +AK +F L G + D Sbjct: 177 SHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINTDD 236 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + + G++ + L++ + E+ EV+ VV G Sbjct: 237 QWSGRAIEVATGVGCDVRTVGRNGSL-LALKRLEHERERQVAEVKTPDGIQRVVLPLAGE 295 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + V A++ L GR ++ G +D ++ Sbjct: 296 FQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAG-GVPVFVDYAHKPEA 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 VL + P GR I V+G G + ++ V ++ + Sbjct: 355 LE-----HVLRAVRPFTTGRVILVMG----CGGDRDKTKRPMMGEIANRLADVVIVTDDN 405 Query: 411 VLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + GD V+V K Sbjct: 406 PRSEDPAVIRSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKG 454 >gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] Length = 484 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + V+ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ E + G Sbjct: 238 GANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L +D + LS GR + N + +ID ++ + Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens str. 13] gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Clostridium perfringens str. 13] Length = 484 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ E + G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-GIEEFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L +D + LS GR + N + +ID ++ + Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 485 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 77/451 (17%), Positives = 155/451 (34%), Gaps = 42/451 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI DSR I F A +G + DGH++I AV+ GA ++V+ + ++ Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSS--------- 132 +DD+ L +A + K II +TG+ GKT++ M+ + Sbjct: 75 SYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITRIGTI 134 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVI 189 K + N L L ++ E + +S ++ A+ Sbjct: 135 EYKIGDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDFDYALF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRLYDEFIVDNPEIISY 254 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 ++ + + S+ +++V+ + + +V +G N L +GI + Sbjct: 255 GIENGDLEG------DYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGIALKIGIS 308 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ +K +S GR + C + Y P ++ I I Sbjct: 309 MEEILKRVSNIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KNGS 362 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 R I + G G + ++ V L+ + +K + Sbjct: 363 RIITIFG----CGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFIK 418 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 S + + + D++++ Sbjct: 419 SDDYFFEPDREKAIKLAINMAEKNDIILITG 449 >gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] Length = 483 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 84/474 (17%), Positives = 158/474 (33%), Gaps = 47/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ + + + VN I DSR + + F + G DGHD+ A++ G Sbjct: 1 MKLLDLLKGVDYELLEGTVEKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V+ + I S + V V++ AL ++ +I +TG+ GKTTT Sbjct: 61 AKVVLCEKKI--DIKSEGVTVLLVNEGRKALATMSANYYGHPTKSLKLIGVTGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFE 166 +L L K +G+ N+IG + + ++ + E Sbjct: 119 VYLLKSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH ++ + + + T + HL + +AK ++FE + + Sbjct: 179 V-SSHSLQLDRVYGC-EFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFERSKASVINV-- 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + L K I ++ + N+DF+ + Sbjct: 235 -DDDYGYRVLKDVEKLENKEIKTYSINNNSDFKASDLMLKEGDI-------HFKINGEEF 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 N+ LG V ++ + G+ R I + Sbjct: 287 NSVLPGEYNVYNALGAVGAMSILGISNESIRKGLLDVVVPGRCERIGYKYDIPYDIIIDF 346 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P +K + + + R IAV G G+ + +L + + + Sbjct: 347 AHTPDGLKNILET---LKGFTKNRLIAVYG---CGGDRDKVKRAELGRIGTELADLAIIT 400 Query: 407 SG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 S + +K+ + +Y E +GDVVV+ K Sbjct: 401 SDNPREEDPMAIIKEIVAGITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKG 454 >gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] Length = 481 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 159/489 (32%), Gaps = 60/489 (12%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VN + DSR + + F A KG + DGH ++ A+ GA ++ + Sbjct: 11 GNTNIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIICE--GFSFDRK 68 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I V D AL +A K ++ +TG+ GKTT +L + Sbjct: 69 EGITYIRVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAGYKVG 128 Query: 139 CIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 + + +G M +D + +S G + T ++ Sbjct: 129 LLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTEGLQF 188 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + T ++ HL E + K + F+ L K+ N DD + + A Sbjct: 189 SGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDDLPKSAFALTNIDDKNGNYMLQNTKAKK- 247 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 YS+ ADF+ + ++ + + + +++ Y++ + + Sbjct: 248 ---YSYALKTLADFKAKILEKQLSGTLISIDNTEVWTKLIGVFNIYNLTAIIATAELLGL 304 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + L++ E R+ +++ T I + Y P ++K + ++ I Sbjct: 305 E-------KLDILTIVSQLESVNGRFEYVVSEDGVTAIVD-YAHTPDALKNVLETINDIR 356 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420 + E V G+ +S +A + + + ++ S + D + Sbjct: 357 TNNEKVITVV----GCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEA 412 Query: 421 SIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS-----------SNSCGFYRLI 461 I + GD++++ K S+ + Sbjct: 413 GISPEHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHESYQEINGVRSHFNDLEEVT 472 Query: 462 ---NLLLEE 467 N L ++ Sbjct: 473 NCFNQLKKK 481 >gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] Length = 504 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 151/486 (31%), Gaps = 51/486 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M DLL S +V I +DSR I + F AI G DG +I HA Sbjct: 1 MKTYRNLSDLLH----QSKKLVANVKFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHA 56 Query: 61 VQKGAGLVVVNTDMVASIGS-----LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 + +GA ++ ++ + IP+ V ++ + + +I + Sbjct: 57 ISRGASAIIAESNSLTKEDEFIKFLNQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGV 116 Query: 114 TGSVGKTTTKEMLTI----ALSSIKKTYACIGSYNNHIGVP-----------LTLARMPV 158 TG+ GKTT ++ P + +M + Sbjct: 117 TGTNGKTTVSHIVAQLAKLIGQKSAVMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFL 176 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + I + +S G + T + A+ T I HL + IE +K ++F + Sbjct: 177 EKSVKIVAMEVSSHGLDQGRTCSLSFSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHD 236 Query: 219 KTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 +F D + +K S A+ I K + Q+ + Sbjct: 237 CKNRVFFIDDPVGSKWIKDFPNSCAVSINHKNKLNLLNRPILYATKIEYLYNQTIIRFNS 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + E+ +G N ++ + + ++ + IK P GR + + Sbjct: 297 DWGNGEIRTSFLGEFNVANFMLAIASLLMIGYPIHLLIKNSKRVSPVIGR---MQLVSHY 353 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 +ID ++N++ L I H G+ V G G + + Sbjct: 354 NPRVIIDYAHNSDS-----LKQCLISIRKHFGGKIWCVFG----CGGSRDKGKRAIMGRI 404 Query: 397 SLYNISHVWLSG-----FHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVV 447 + V ++ + + R + Y + S D V Sbjct: 405 AEKYSDFVIITDDNPRFEDPKKIFKEILRGCTHLESIRYFPERKYAIRYSISRAKPNDTV 464 Query: 448 VV--KS 451 ++ K Sbjct: 465 LIAGKG 470 >gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] Length = 477 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 149/459 (32%), Gaps = 58/459 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + ++ DSR I F AI G +DGH FI A++ GA +V+ D+ G Sbjct: 18 NNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDG-- 75 Query: 82 SIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 I VDD AL +++ K +I +TG+ GKTTT M++ L + Sbjct: 76 -INYIKVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLNSPCTN 134 Query: 140 IGSY-----NNHIGVPLTLARM-----------PVDVDFGIFELGMSHLGEIRFLTHLVR 183 IG+ P T + +D + E S G + Sbjct: 135 IGTNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVEC--SSHGLYLHRLDGID 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV ++ H+ +E AK +FE + + + Sbjct: 193 FDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN--------AKKKIANVDDEYGRKAKAR 244 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + Y+F +DF+ + + + + K+++ V + N + + V Sbjct: 245 FEDTYTFSLENESDFRAENVELIDGK----MHFEIKNVKFVLNRFALFDVYNAVAAIAAV 300 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++L +++ KAL F E R + + + + Sbjct: 301 NLLGYELEDIAKALESFTGVEARFEFVNNDRGINIVIDFAHT----------PKAFENIY 350 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420 +R + M G+ ++ ++ ++ + N+ V + + + Sbjct: 351 KSVPNDKRKIAVYGMS--GDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIV 408 Query: 421 ------SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GD V++ K Sbjct: 409 SGIEEANGEFVRIKDRKSAIKHAIEMADKGDFVLLLGKG 447 >gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM 17244] gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM 17244] Length = 481 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 147/476 (30%), Gaps = 49/476 (10%) Query: 5 WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 D+L+ G + +N I DSR F I G DGH +I A++ Sbjct: 1 MKLKDILEGYPHSLNGNKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYIDSALK 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120 G ++ + ++ I ++ AL A +I ++G+ GKT Sbjct: 61 LGVKVICHSEELEGYKD--DITYIKCENTRNALAYFANRFYSFPSKNLKLIGVSGTNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGV--------------PLTLARMPVDVDFGIFE 166 + ++ ++ IG+ V D Sbjct: 119 SFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDMVKNDVDYCF 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L +S G + + +I V + ++ HL +EE AK +++ +++ I ++ Sbjct: 179 LEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLYYMVDRFSVINID 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D K + SFG+ + +D+++ + +S + + V + Sbjct: 239 DDYGHRLY---NELKEDKKDVISFGEKEQSDYKITIKELSLSKSSFTLTKGNNKYDFVIN 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+ + I + +A+ +H N + ++ + Sbjct: 296 SIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGT-----------NGRIERVAEDIF 344 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +L I + V G G + +S ++ L Sbjct: 345 IDYAHTPDAMEKILKLIREVSSKKITLVFG----CGGNRDHGKRPIMGSVSEKYADNIIL 400 Query: 407 S---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + D ++V+V K Sbjct: 401 TMDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKG 456 >gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] Length = 499 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 82/488 (16%), Positives = 163/488 (33%), Gaps = 55/488 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL+A + Q + ++ DSR++ FF ++G H DGH+F A + Sbjct: 1 MKQLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAEN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA ++ + + + + V D A+ + K +IA+TG+ GKTT Sbjct: 61 GAAAIIAEKKIDVA---SDVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166 T +++ L + IG+ + IG + L +M + + Sbjct: 118 TTHVISHILHHVGYKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQMLKENVTHVC- 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--- 223 + +S + AV T + HL ++ A AK+ +F+ + I Sbjct: 177 MEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQIKDG 236 Query: 224 ---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 ++N DD + ++ + ++G + N D + + S ++QL K Sbjct: 237 KSAWINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLGEKR 296 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + IG N++ +G D+ ALS F GR + + Sbjct: 297 YVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELIEEGQSFSVVV 356 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + + +L+ +GR I G G + ++ Sbjct: 357 DYAHTPDG-------LEKILTTAKEIAKGRLITCFG----CGGDRDKLKRPIMGRIAANY 405 Query: 401 ISHVWLSG-----FHVLALKDALPRSIH----------VHYSETMDGLFLFIQSSLVDGD 445 V ++ + + + + S + D Sbjct: 406 SDVVVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQD 465 Query: 446 VVVV--KS 451 +V++ K Sbjct: 466 IVLIAGKG 473 >gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] Length = 489 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 147/477 (30%), Gaps = 46/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + G + + + +DSR +AP FF +KG DGHDF AV + Sbjct: 1 MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARK 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + S+ +PV V D A+ LA A R + +I +TG+ GKTTT Sbjct: 61 AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ K IG+ + +G + + E + Sbjct: 116 TSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S + H +AV T + HL +EE A G Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + I ++G + +D + + + + S V Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L ++T AL+ P GR + N + Sbjct: 296 LVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ++ + L + + V+G G L +++ Sbjct: 356 DS-------LENALKTVRQLAKRNVYVVIG----CGGDRDRSKRPLMAQVAVRYADVAIF 404 Query: 407 S-----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + +GDVV++ K Sbjct: 405 TSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461 >gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] Length = 487 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 74/476 (15%), Positives = 149/476 (31%), Gaps = 46/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L + ++ V + DSR + + F AIKG DGH FI A+ Sbjct: 1 MKLLKDILFGVGLTAVSGSTNLMVGTLCFDSRKVKLDDVFVAIKGTLTDGHKFIEKAIDS 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V T + + VD AL +A ++ ITG+ GKTT Sbjct: 61 GAVCIVCET--MPEQLVNGVTYVEVDSGNKALAIMASNYYDNPSKNLKLVGITGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIFEL 167 +L I + + + + Sbjct: 119 ISSLLYQLFKKAGFKVGLISTIKIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + A+ T + HL E K +F+ L K N Sbjct: 179 EVSSHGIHQKRTEGLVFEGAIFTNLTHDHLDYHKTFAEYRDTKKSLFDKLPKNAFALTNV 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A +++ AD++ + + + ++V +++ Sbjct: 239 DDKNGLVMLQNTAARK----FTYALKSYADYRAQILENQFDGQLLKVDDDELWTKLI--- 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 N L I + ++ L + + R++ +++ T I + Y Sbjct: 292 ----GHFNAYNVLAIYATADLLGLEKLETLRLLSELDNVDGRFQYYISKEKITAIVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + + + E V G+ +S + + S + ++ S Sbjct: 347 HTPDALKNVLETIGTLRTGNENVITVV----GCGGDRDKSKRPVMGNIASQMSNKTIFTS 402 Query: 408 G----FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + E + D+++V K Sbjct: 403 DNPRTESPSVIIEEMEAGVEPQNVKKILSIENREQAIKTACQLATANDIILVAGKG 458 >gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] Length = 495 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 71/460 (15%), Positives = 142/460 (30%), Gaps = 36/460 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74 G + + G+++DSR + F A+ G G FI A++KGA ++ + Sbjct: 14 GLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTDAAGA 73 Query: 75 ---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + V+D L A T++A+TG+ GKT+ + + Sbjct: 74 GIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVRQIWT 133 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LGMSHLGEIRFL 178 + +G+ LA + + G+ + S G + Sbjct: 134 ELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRR 193 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKA 237 V+ A T HL E +AKA +F + + + + ++A Sbjct: 194 LDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGAEMRA 253 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + A G + I + ++ + + + + G Sbjct: 254 VAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQ-----AE 308 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L + A + + R + A + + + Y P ++ Sbjct: 309 NVLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAV---A 365 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412 S + + PH GR IA++G G + L + N V ++ Sbjct: 366 SAIKALRPHVLGRLIAIVGA----GGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPA 421 Query: 413 ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKS 451 A++ A+ L L GD +++ Sbjct: 422 AIRAAVKGGAPGCIEIGDRAEAILRGADMLGPGDALIICG 461 >gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 460 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 74/476 (15%), Positives = 138/476 (28%), Gaps = 53/476 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ ++ I V+G+ IDSR I + F I G DGHDF AV GA Sbjct: 3 LNEFASLLKTSQIVGDETVEVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 +VV + +++P V + A+ A II +TG+ GKTTT Sbjct: 63 ALVVERRL-----DVNVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTY 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168 ++ L +G+ IG D D+ + E+ Sbjct: 118 LIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVS 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIF 224 L R R V T + HL ++ A + + + Sbjct: 178 SHALDFGRVKGIPFR--SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQR 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + L + ++G K D + + +E + + + + Sbjct: 236 SYAILNVDDEASETFQRLTSAEVITYGIEKECDVRASNIRITAEGTEFTLTTFEGTENIR 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + ++ K+L+ + R + ++ + Sbjct: 296 MKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAE---VDSVPGRMEVVSEGQDYLVLVD 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + LS + EG V G G L ++ H+ Sbjct: 353 YAHTPDG----LENTLSTVKEFAEGHVYCVFG----CGGDRDRTKRPLMGKVTAKYSDHL 404 Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 +++ + + +A DVV Sbjct: 405 FVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460 >gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 503 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 88/484 (18%), Positives = 155/484 (32%), Gaps = 50/484 (10%) Query: 1 MNPLWTFHD--LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + D +L+ I G + + DSR I P F + G H DGHD+ Sbjct: 1 MI-LQSLTDRLILKKITG-----STSADITNLETDSREIRPGGVFVCVPGFHVDGHDYAE 54 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 A++ GA +V ++ G ++ V D L LA A + +I ITG+ Sbjct: 55 QAIRNGAVAIVAERELSGLPG--NVTHITVPDTRRILPILANAFFGDPTRQLKLIGITGT 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE- 166 GKTTT M+ L+ ++ IG+ IG P T+ M Sbjct: 113 NGKTTTTHMVDQILNDARRKTGIIGTLYMKIGNHVEKTLNTTPDTIQLMRYFHTIISHGG 172 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L +S G V T ++ HL +E + K +F L + Sbjct: 173 EYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNR 232 Query: 223 IFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + +A I ++G AD + + E + S Sbjct: 233 DMQKKAVLNADDAASSYYAKRTSAQIITYGIQNQADVRATQIHHSREGCVFHAETPWGSS 292 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V G H N L + + ++ +L F GR + + + F + Sbjct: 293 DVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQ--TGRRFGVV 350 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++N + + L G+ I V+G E + ++ Sbjct: 351 VDYAHNPDG-----LKATLQSAKAITSGKMICVMGCRGE----RDRSKRPIMADIAASYS 401 Query: 402 SHVWLSGFHV------LALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 +V + + + + L S + D D +++ Sbjct: 402 DYVLFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIIT 461 Query: 451 SSNS 454 Sbjct: 462 G-RG 464 >gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] Length = 498 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 83/466 (17%), Positives = 154/466 (33%), Gaps = 48/466 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 P+ + I+ +S+ + P F AI+G DGH +I A+ +GA LV+ D+ Sbjct: 19 EVRNNNPEIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYIGDAISRGAILVIYEHDLDE 78 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134 I V + L ++ +I +TG+ GKTT ML Sbjct: 79 YQD--DIMYVKVKNARHMLGTMSSRFYGHPSEALSITGVTGTNGKTTITHMLKSIFQKDG 136 Query: 135 KTYACIGSYNNHIGVPLTLA-----------------RMPVDVDFGIFELGMSHLGEIRF 177 + IG+ NN IG + + + E+ SH ++ Sbjct: 137 RKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIISEMVEAGCQNLVMEV-SSHALDLDR 195 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + + + + + HL E AKA++F K I + + + L Sbjct: 196 VNGVA-FDYGIFSNLTQDHLDYHKTFENYFEAKAKLFTYTSKANIINCDDV--WGKKLYD 252 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + +YS+G + DF R K E + + + E+ G M N + Sbjct: 253 RCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTLVTKDGEEEIFISIPGEVMVYNSM 312 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + ++ +AL+ EGR +R + S + Sbjct: 313 AAIINALLEGISIEVIKEALASMSGVEGRMERLDLDTEF-------DIIIDYAHSPDSLE 365 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412 +L + +G+ V G + ++ HV ++ Sbjct: 366 RLLKSVKTMYDGKVYLVFG----CNGDRDKEKRPIMGRIAGEFADHVIVTSDNPASEDPQ 421 Query: 413 ALKD--ALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVVV--KS 451 ++ D A + ET+ + + GDV+V+ K Sbjct: 422 SIIDTVAAAVAEKTDACETVLRRWDAIYYAATLPKAGDVLVLAGKG 467 >gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 465 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 153/449 (34%), Gaps = 52/449 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 GI+ DSR + FFAI+G +DGH+F+ A+++GA VVV D+ A V Sbjct: 12 EAQGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEAVQ-----RV 66 Query: 86 FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V++ L + A R ++ +TG+ GKTTT +L L +G+ Sbjct: 67 IKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHAGLMGTI 126 Query: 144 NNHIG-----------VPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 +G P+T R + E+ S ++ Sbjct: 127 QYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEV--SSHALDQYRVWGTEFEAV 184 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E+ AKA +F + + DD + + L + Sbjct: 185 IFTNLTQDHLDYHRDMEDYFRAKARLFFDYKYRFAVVNT-DDPYGKRLARDLGDRALTYG 243 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + ++ +K + S + V +GKS + IG A N+ L + Sbjct: 244 -----REGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVG 298 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D + +AL G+ ++GF ++D ++ + +VL + Sbjct: 299 IDPNAIQEALKD---VHVPGRFEVHRSDRGFIAVVDYAHTPDA-----MDNVLRTMRRLT 350 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 + R I V G G L + V ++ + + + Sbjct: 351 KNRVICVFGA----GGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGV 406 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 V + +GD+V Sbjct: 407 EDKGKVKVIPDRREAIAEALNIAKEGDIV 435 >gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] Length = 492 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 139/478 (29%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + H +L+ H + VN + +DSR + P + F AIKG DG FI A++ Sbjct: 1 MRDLHTILK----HLEIDAARLMVNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIEN 56 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA ++ + P++ V ++ L LA + ++ +TG+ GK+T Sbjct: 57 GASAIIADRLCEFESDFE--PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKST 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T M+ + G P L + + Sbjct: 115 TTAMIAHL--AQFCHTQAAIIGTLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLV 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ AV T ++ HL ++ AK +F + I Sbjct: 173 AMEVSSHGLVQHRVDQCYFKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRDFDADHVILN 232 Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D + ++ S I + + + ++ + + Sbjct: 233 QDDGQAEQWIEKYSFNSLICYGRKNLAPKNAQFVYFSDVQYSATGISAQLTTSWGDVAIK 292 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N+ L + L + + P GR + + Sbjct: 293 SPLFGEFNLYNLTAALATLLALGYPLTQLVAGCEYLQPVAGRMQAFTAPSMPTCVVDYAH 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L + H G V G G L + V Sbjct: 353 TPDALAL-------ALQALQQHVPGGVSCVFG----CGGDRDKGKRVLMAQAAEQFADKV 401 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + H F + G+V+++ K Sbjct: 402 IITSDNPRSEDPNDIINDVAAGLEHPENAHLEADRGAAIQFAIDNAKAGEVILIAGKG 459 >gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 486 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 80/480 (16%), Positives = 152/480 (31%), Gaps = 60/480 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL I GI + I+ DSR + P FFAI G DG+ FI A++KG Sbjct: 1 MKLKKLLNHIGISYEGI--DLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKG 58 Query: 65 AGLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 A V+ + V + +P V D+ + K +I +TG+ GKT Sbjct: 59 AVAVISDNAEVVKLYSKKYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------------MPVDVDF 162 TT ++ L+ + A IG+ G P + ++F Sbjct: 119 TTSYIIYNVLNKLGHKTAIIGT--VEYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEF 176 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+ S G ++ A+ T + HL I +K ++F T + Sbjct: 177 VVSEV--SSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLFF---LTKS 231 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I + D F + + A+ + ++GK+ + + K+ + + ++ + ++ Sbjct: 232 ISVINIDDPFGKVLSGLRAIFPCELITYGKNGKVKIENVENKKFGSEITLRLENKRYVIK 291 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G +L + A+ + I Sbjct: 292 TNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKVPG---------RLEEVVENVFI 342 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + VL+ +S +G+ I V G G ++ Sbjct: 343 DYAHTPDALE-----KVLTVLSQIKKGKLITVFG----CGGDRDREKRPFMGKVAEKFSD 393 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + + V D+V++ K Sbjct: 394 RVIITNDNPRSEEPSKIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKG 453 >gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] Length = 486 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 88/474 (18%), Positives = 159/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++ I+ I Q + I IDSR + Q F A++G DGH +I A+++GA Sbjct: 3 IENLIKGIETKKIIGPVQNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + + I V AL LA K ++ +TG+ GKTT Sbjct: 63 AILCED--LPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLVGVTGTNGKTTVAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMS 170 +L + Y + P + + D + +S Sbjct: 121 ILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL I AK E F+ L K +N DD Sbjct: 181 SHAIDQKRISGLKFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNLPKNAFSLVNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + I+++ DF+ R + + L+ + +VV G Sbjct: 241 NGMVMVQNTKSA----IHTYSLRSLCDFKARVIESHFNG----MILEINNTDVVVQFTGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L G +L D + A+S GR + + Y P Sbjct: 293 FNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETLQAPKGYTVIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + I G+G+ I V+G G L S+ N V ++ + Sbjct: 349 DALTNVLTTIHDI-LDGKGKVITVVGA----GGNRDKGKRPLMAKESIKNSDTVIITSDN 403 Query: 411 ---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L +V E DV+++ K Sbjct: 404 PRFEDPQEIIKDMLDGLNTEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKG 457 >gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] Length = 484 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 91/470 (19%), Positives = 168/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ + + + G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-EVEDFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L ++ + LS GR + N + +ID ++ + Sbjct: 297 YNVYNSLGCIICAYNLNIPMNKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTRNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] Length = 485 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 77/458 (16%), Positives = 141/458 (30%), Gaps = 48/458 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + D+R + F IKG DGH F + A ++GA ++ + + I Sbjct: 19 NPEITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEKPV-----DVDI 73 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V + A+ LA + K ++ ITG+ GKTTT ++ +T IG Sbjct: 74 PVIIVRNTKRAMALLADRFYGQPSRKFRLVGITGTNGKTTTSHIIEKIYRDAGRTTGLIG 133 Query: 142 SYNNHIG---------------VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + IG + T M V + E+ S + H Sbjct: 134 TMYMKIGDETLETKNTTPDSLTLQKTFHEMNARGVTDCVMEV--SSHSLVEGRVHGCDYD 191 Query: 186 IAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 IAV T + HL + E A + G + + + + Sbjct: 192 IAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAASKEFEQVT 251 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++G +ADF + + + + EV G NML + Sbjct: 252 AVPVITYGIDHDADFMAENIDMHARGTTFTLVTPFEKREVRLKLAGKFSVYNMLAAIAAG 311 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + +D+ IK GR + + + ++ +VL I Sbjct: 312 VVSGVPLDSVIKTAEAMEGVRGRFELVNGGQDFSVIVDYAHTPDS-------LENVLKTI 364 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDAL 418 + V+G G + ++ + + + A+ + Sbjct: 365 RQFARKKIFVVVG----CGGDRDKTKRPVMAQIACKYAHYPIFTSDNPRSEDPIAILREM 420 Query: 419 PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + E GDVV++ K Sbjct: 421 EKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKG 458 >gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] Length = 484 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 92/470 (19%), Positives = 167/470 (35%), Gaps = 40/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK ++FE + D Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++K + +F K +DF+ + K S S +V L+ E + G Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L + L +D + LS GR + + +ID ++ + Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKKLPYSIIIDYAHTPDG 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407 Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis] Length = 483 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 147/457 (32%), Gaps = 41/457 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + + GIS +SR I P F A++G DG +I A+++GA +VV + D VA Sbjct: 14 NNLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE-- 71 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +LS+PV V DV L A T++A+TG+ GKT+ + + A Sbjct: 72 NLSVPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAAS 131 Query: 140 I-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPH 185 I + P+ L R+ + D G+ L S G + + Sbjct: 132 IGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGINLA 191 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T + H+ + +++ AK +F+ L L D + + Sbjct: 192 AAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGR 251 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + G+ R + S+Q + + L + Sbjct: 252 RALTIGRKGQFIKINRIEHRRSKQYVECRIENDVY----TFDLPLVGHFQVTNALMAAGL 307 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ K S +G R + Y P +++ + P Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAA---RP 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 GR I V G G L L L V ++ + + Sbjct: 365 FTPGRLIVVFG----CGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQ 420 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A P ++ + + L GD +++ K Sbjct: 421 AAPGALEI---ADRSEAIYYAVGLLEAGDTLIIAGKG 454 >gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] Length = 482 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 164/476 (34%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+AIQ + + + G++IDSR +A F A++G DGH +I A+++G Sbjct: 1 MKLTELLKAIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A V+ + + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 61 AIAVLCED--MPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y + VP D + Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK + F+ + K+ N D Sbjct: 179 VSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + +Y++ +DF+ + + E + L + E+ I Sbjct: 239 DKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS HP GR R + +A Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSIRSPKGITAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL+ G G+ I V+G G + S V ++ Sbjct: 351 LVNVLNAIHDVLA-----GRGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + GDV++V K Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKG 457 >gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] Length = 493 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 152/455 (33%), Gaps = 40/455 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P+ + G+ +DSR P + +F + G +DGHDF+ + KG +V + Sbjct: 17 APEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVKAIVHAKPI--EHMHK 74 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + V++V LN++A + +TG+ GK+T ++ S Sbjct: 75 GVAYIQVENVNRTLNRIASLFYQHPSRYMKVFGVTGTNGKSTITSIIQDVYSHFHPCGYI 134 Query: 140 IGSYNNHIGV----------PLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHI 186 + V P+ + + D+ E S G V I Sbjct: 135 GTIAIRYGDVELPPSLTTPDPILIHKSMADMRAAGMEACALEVSSHGLELGRVMSVDFDI 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ + + HL IE AK ++F L+ G LN DD++++ Sbjct: 195 AIFSNLTYDHLDFHGTIENYLEAKKKLFTNLKSDGVAVLNRDDAYYQAFAD----CTNGR 250 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++G ++D++ + ++ S + KS + + + + N+L + + Sbjct: 251 LVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEKSYTIKTNLVAMYNIYNLLGAIAGMCEA 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 ++ + L+ EGR +R + P ++ I+ Sbjct: 311 GIAIEDMLPYLASIKQIEGRMERIDEGQLFNVIVD----FAHTPDGLEKVFEYAKDITKE 366 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS 421 G IAV G + + ++ + L+ + + + Sbjct: 367 GHS-IIAVFGSAG----KRDTKKRKVFGEIASKYCDSIILTEDDPRDEDAREIANEIKEG 421 Query: 422 IHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 I + E S D V++ K Sbjct: 422 IKDTKNIFIEDRYNAIRQAIESAGAYDTVLILGKG 456 >gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 502 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 87/486 (17%), Positives = 159/486 (32%), Gaps = 54/486 (11%) Query: 1 MNPLWTFHD--LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M L + + +L+ I G + + DSR I P F + G H DGHD+ Sbjct: 1 MI-LKSLTERLILKTITGSL-----SVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYAE 54 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 A++ GA +V ++ S ++ + V D L LA A + +I ITG+ Sbjct: 55 QAIRNGAVAIVAERELSG--LSENVTLITVPDTRRILPILANAFYGDPTQRLKLIGITGT 112 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDV 160 GKTTT M+ L+ ++ IG+ IG + + Sbjct: 113 NGKTTTTHMVDKILNDARRKTGIIGTLYMKIGNHAEKTLNTTPDTIQLMRYFHTMISHGG 172 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 ++G+ E+ S G V T ++ HL +E + K +F L + Sbjct: 173 EYGVLEV--SSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQLGNS 230 Query: 221 GTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 L + + +A I ++G AD + E + Sbjct: 231 NRDMLKKAVLNADDDASSYYAKRTSAQIITYGIQNQADVRATHIHHTREGCAFHAETPWG 290 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S EV G H N L + + ++ ++L F GR + + + F Sbjct: 291 SSEVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQ--TGRRFG 348 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D ++N + + L G+ I V+G E + ++ Sbjct: 349 VVVDYAHNPDG-----LKATLQSAKAITSGKMICVMGCRGE----RDRSKRPIMADIASS 399 Query: 400 NISHVWLSGFHV------LALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 +V + + + + L S + D D ++ Sbjct: 400 YADYVLFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRII 459 Query: 449 VKSSNS 454 + Sbjct: 460 ITG-RG 464 >gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia canadensis str. McKiel] gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel] Length = 478 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 76/479 (15%), Positives = 159/479 (33%), Gaps = 63/479 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+ L Q Q + G+S +S++I E FFA+KG DG+DFI A+ K Sbjct: 2 LFNLKQLFQ-----------QHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNK 50 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA LV+ + + +I V V+D+ AL ++ + +IA+TG+ GK++ Sbjct: 51 GAVLVITDNEKNTAIN----KVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVI 106 Query: 124 EMLTIAL-------------------SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFG 163 + + +++ + + +++ Sbjct: 107 SYIAQLYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYL 166 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 FE S G + + +IA T+ + HL E AK ++F I Sbjct: 167 AFE--ASSHGLDQTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAI 224 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + D + G D Q+ + + ++ + Sbjct: 225 SILNSDIEEIEFIKAYLNKHNIKFITVGI--KGDLQITRINSSLKGQNIDFTFNNRKYSF 282 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L+ D I +L P +GR ++ ++ Sbjct: 283 NTPIIGSFQASNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQIENTNIFVDYSHTP 342 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ +K + S++ + G G L ++ + Sbjct: 343 DALEKALLELKNIQVLGSKL--------NVIFG----CGGNRDKKKRSLMGQIAAKLADN 390 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + + ++ ++ E + + ++L D++++ K Sbjct: 391 VIITDDNPRLEDPKLIRAEIISGIDKANYIEI-ENREKAIKYGINNLNQDDILLIAGKG 448 >gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] Length = 486 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 86/474 (18%), Positives = 148/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 +V G S V D AL L ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + Y + P +L V+ + +S Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL +E AK + F+ L N DD Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ ADF+ + + E + + + + H +G Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G L D + + LS GR + + L + +A Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL G+GR I V+G G L + V L+ + Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAAKLSDQVILTSDN 403 Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V GDV++V K Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKGDVILVAGKG 457 >gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] Length = 494 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 142/459 (30%), Gaps = 34/459 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73 G + + GI++DSR + F A+ G G F A+ GA ++ + Sbjct: 13 GLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGA 72 Query: 74 --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + ++ + V+D AL A T++A+TG+ GKT+ + Sbjct: 73 QIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWV 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFL 178 + +G+ L + + S G + Sbjct: 133 ELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGLEQRR 192 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL E +AKA +F + + + D Sbjct: 193 LDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRA 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + + S G+ D L + + M K + + IG A+N+L+ Sbjct: 253 VAAARGQEVISVGR-GLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENILL 311 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D L GR + N +D ++ + + Sbjct: 312 ACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGA-TVFVDYAHTPDAVAT----- 365 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 + + PH GR +A++G G + L + N V ++ Sbjct: 366 AIKALRPHVLGRLVAIVGA----GGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAV 421 Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ L +L GD +++ Sbjct: 422 IRAAVKGGAPDAMEVGDRAEAILRGVDALGAGDALLICG 460 >gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp. P1] Length = 352 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 23/228 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M + T ++ G G+ + V + DSR P F A+ G DGHDF Sbjct: 42 MIEM-TLAEVAAVTGGTLHGVSDEQAAVPVTAVEFDSRKAGPGALFLALPGERADGHDFA 100 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVA 101 AV +GA V+ + A ++ P V D VL AL +LA Sbjct: 101 AGAVTRGATGVLAGRPVDA--PAVVAPPAEVRDAHTYLGSVDPDGHGAAVLAALGRLARH 158 Query: 102 ARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 ++ +TGS GKT+TK++L L+ +T A S+NN +G P T R Sbjct: 159 VLGALPGLAVVGVTGSAGKTSTKDLLAAVLAPQGRTVAPPESFNNELGTPWTALRADAAT 218 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + E G I L + P I V+ + AHL F IA+ Sbjct: 219 RHLVLEFSARGAGHIAALCAVAPPRIGVVLNVGSAHLGEFGSRAGIAA 266 >gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] Length = 490 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 158/473 (33%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELASGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE-- 166 + + A IG+ + G+ Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] Length = 485 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 74/455 (16%), Positives = 152/455 (33%), Gaps = 46/455 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +GI DSR + F A++G + DGHD+I AV+ GA ++V+ + Sbjct: 16 DLNRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHK-- 73 Query: 82 SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + +D++ L LA + K II +TG+ GKT++ M+ + T Sbjct: 74 -VSYVLIDEIRHKLGYLASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITRIG 132 Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 Y V + + +++ + E+ L R ++ Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVD--VLDFD 190 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL +E AK ++F L+ T N DD + + L + + Sbjct: 191 YALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDTNNSVFNIDDKYGKKLYDEFIEDNPE 250 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I + + + + +++++ + K +V +G N L + I Sbjct: 251 IISYGIDGGDLEGE------YLDDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAIAVK 304 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ +S GR + C + Y P ++ I I Sbjct: 305 MGIKWEDILERISNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNIR- 359 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 R I + G G + + V L+ + +K Sbjct: 360 -NGNRIITIFG----CGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKT 414 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + + + D++++ Sbjct: 415 GFAKNDDYFFEPDREKAIKLAINMAEKNDIILITG 449 >gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] Length = 495 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 89/472 (18%), Positives = 165/472 (34%), Gaps = 42/472 (8%) Query: 6 TFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L L A+ + + G+S+DSR + F A+ G G DFI +A+++G Sbjct: 9 TLAELGLTAMGAQ------EAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQG 62 Query: 65 AGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A ++ + I + + D AL A +A+TG+ GKT Sbjct: 63 AAAILTDQKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKT 122 Query: 121 TTKEMLTIAL------SSIKKTYACIGSYNNHIGV----PLTLARMPVD-VDFGIFE--L 167 + ++ T G+Y+ G P+TL R+ D GI + Sbjct: 123 SVASFTRQIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAM 182 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + ++ A T HL + E +AKA +F + I + Sbjct: 183 EASSHGLEQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVN 242 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + ++ + + S G+ +NA ++ + + + ++ EV Sbjct: 243 RNDARFQDISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPL 302 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A+N+LM G+ AD + L GR + N +D ++ Sbjct: 303 IGGFQAENVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGA-SIFVDYAHT 361 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + + + PH GR I V G G L + + ++++ Sbjct: 362 PDALAT-----ACRALRPHVLGRLIVVFGA----GGDRDKGKRPLMGQAAEAHADVIFVT 412 Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + I L +L GDV+++ K Sbjct: 413 DDNPRSEDPAVIRREVMDGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKG 464 >gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] Length = 519 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 96/478 (20%), Positives = 163/478 (34%), Gaps = 50/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L T ++L+ + ++ DSR + P F AI G DGH F+ A+++ Sbjct: 31 LLTEEEILE-----VRNGDRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQ 85 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA ++V D+ + V D L +A K T+ ITG+ GKT+ Sbjct: 86 GAAVIVHQADLARYHD--DVVYLKVTDCRRLLGHIASRFFGHPSEKITVTGITGTNGKTS 143 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----MPVDVDFGIFE---------- 166 + LT L + K A +G+ +N IG + + D I E Sbjct: 144 STYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGCSDLV 203 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S V A+ T + HL E AKA +F+ + +N Sbjct: 204 MEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFD--QTEKAAIIN 261 Query: 227 YDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 DD + L + K I ++G+ AD++L + S +Q + + Sbjct: 262 RDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEKETIFL 321 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G M N + T+ D AL+ EGR +R + L+ + Sbjct: 322 DVLGRFMVYNAVGTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNLDFDIVVDYAHT 381 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +A ++L + GR IAV G G L ++ Sbjct: 382 PDA-------LENLLKTVKELARGRVIAVFG----CGGDRDHGKRPLMGAIAAKEADFSV 430 Query: 406 LS-----GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ A+ D + ++ ++ + DVV+ K Sbjct: 431 LTSDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKG 488 >gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] Length = 490 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 157/473 (33%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA +V D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 236 FADDQFSAQAIEAATLARCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 354 KPEALE-----NVLTSVRPFTTGRMIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 490 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 77/473 (16%), Positives = 143/473 (30%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELPPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ + + E+ V+++ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIE 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 Q + + V A ++ K G+ + + Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL+ + P GR I V G G + ++ V + Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] Length = 482 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 95/474 (20%), Positives = 165/474 (34%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + LL+AIQ + + GI+IDSR + + F A++G DGH +I A++KGA Sbjct: 3 LNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 V+ + I V D A K+A SK ++ +TG+ GKTT Sbjct: 63 AVLCED--MPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELGMS 170 +L I + N+I P+TL R+ D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGCKYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ + K N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ ++F+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSNFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSPKGVTAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella canis ATCC 23365] gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC 23365] Length = 488 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 84/469 (17%), Positives = 157/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELASGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE--LGMS 170 + A IG+ + G+ + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +D ++ Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL+ + P GR I V G G + ++ V ++ + Sbjct: 356 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 493 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 77/456 (16%), Positives = 153/456 (33%), Gaps = 36/456 (7%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VA 76 + G+++DSR + F A+ G G +FI +A++ GA ++ + + Sbjct: 17 GGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTDAEGARIAAD 76 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + + + V D L A T++A+TG+ GKT+ + + + Sbjct: 77 ELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVRQIWTELGHM 136 Query: 137 -----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTHLVR 183 + + + G+ + S G + V Sbjct: 137 AVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGLEQRRLDGVH 196 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A + HL + E +AKA +F+ + + D Sbjct: 197 LTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGAAIRDIAQAR 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 +T+ + G S +AD L + + + +GK+ + + IG A+N+L+ G+V Sbjct: 257 GQTVLTVG-SGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAENVLLACGLV 315 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + L GR + N +D ++ + + L + Sbjct: 316 IASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGA-AVFVDYAHTPDAVAT-----ALQAL 369 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA- 417 PH GR IA++G G S L + N V+++ A++ A Sbjct: 370 RPHVMGRLIAIVGA----GGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAV 425 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L +L GD +++ K Sbjct: 426 MAGAPDATEVADRAEAILRGIDALQPGDALLIAGKG 461 >gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] Length = 484 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 97/471 (20%), Positives = 171/471 (36%), Gaps = 42/471 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + I + V I D+R I +AF +KG DGH FI A++KGA Sbjct: 3 LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V D+ I + V D AL ++ K II ITG+ GKTT+ Sbjct: 63 TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170 ++ L IG+ N+IG L + ++ E + +S Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL E +AK ++FE + DD Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL---DDP 236 Query: 231 FFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + G+KT S F K +DF+ + K S S +V L+ E + G Sbjct: 237 YGANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + N L + L +D + LS GR + N + +ID ++ + Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPD 354 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 ++LS + + R I+V G G+ + + ++ + + S Sbjct: 355 GLE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDN 406 Query: 409 ----FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + + ++GDV+V+ K Sbjct: 407 PRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457 >gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia succiniciproducens MBEL55E] gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E] Length = 488 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 81/458 (17%), Positives = 147/458 (32%), Gaps = 42/458 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GS 80 +N +++DSRS+ F AIKG DG FI A+ GA V+ D Sbjct: 17 IKLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQ 76 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 IPV + L+ +A T++ +TG+ GKTT ++L + +K Sbjct: 77 NQIPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRP 184 N G A + +S G ++ + Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 + T ++ HL +E ASAK +F L I D+ + L+ A+ + Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKIINADDEIGVQWLRELPDAVAV 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ ++ ++ S+ + + + IG N+++ L + Sbjct: 257 SCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLATLL 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L +D +K +S GR + A + +A L Sbjct: 317 SLGYSLDELLKTVSQLTGVCGRMEMLHAAHKPTVIVDYAHTPDA-------LEKALQAAR 369 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 H GR V G G L ++ +V ++ + + Sbjct: 370 AHCTGRLWCVFG----CGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIV 425 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V+ + S V+ DV+++ K Sbjct: 426 AGFKRPESVNIVYDREQAIRTAVQSAVENDVILIAGKG 463 >gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M13/05/1] Length = 488 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 77/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAIEAATLARCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRMIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] Length = 485 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 152/476 (31%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+A+ I VNGI +DSR + F A+KG DGH++I A++ G Sbjct: 1 MKLENMLKAVNAQQIIGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A ++V + ++ + D A+ KLA SK ++ +TG+ GKTT Sbjct: 61 ATVIVCEQ--LPVQIESNVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALS---------SIKKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGIFELG 168 +L S Y + P + D + Sbjct: 119 ATLLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + + T I HL E AK F+ L K N D Sbjct: 179 VSSHSVVQKRISGLTFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKQAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A + DF+ + + + + L + EV I Sbjct: 239 DKNGTVMTQNTQAKVAA----YSLHSLCDFKGKVLEDSFDG----MLLDINNREVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + LS+ P GR R Y Sbjct: 291 GRFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFDAKRSPKGYTAIVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ + + ++ G G+ I V+G G L S V ++ Sbjct: 347 TPDALVNVLEAIHEV-LRGRGQVITVVGA----GGNRDKGKRPLMAKESAQRSDKVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DV+++ K Sbjct: 402 DNPRFEEPQDIINDMLAGLSKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKG 457 >gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 514 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 89/496 (17%), Positives = 164/496 (33%), Gaps = 62/496 (12%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +F +LL + H ++ ++ DSR + P F AIKG H DGH +I A+++ Sbjct: 1 MKSFAELLLHV-THQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQ 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV---- 117 GA VV + A +IP V D AL+ +A A + ++ ITGS Sbjct: 60 GAVAVVYDDPHQA--PPATIPSALVADAKVALSPIAAAFYDYPAQQLEVVGITGSKGKTT 117 Query: 118 -----------GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---RMPVDVDFG 163 M T+ ++ +A + + + + + Sbjct: 118 TTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGCRYA 177 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-------- 215 + E L +A+IT + HL +E+ + KA++F+ Sbjct: 178 VVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATSPSQ 237 Query: 216 ----GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 G + + ++ A S+ AD + + S+ Sbjct: 238 KSILGQPTPVEKVAIVNADDPHAAQFRAAAGEQVRHLSYAIHAEADLRATEIVSTSKGLR 297 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + + +G N+L L + D+ AI+ L GR ++ Sbjct: 298 FTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRMEQVE 357 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 L Q F L+D ++N + V+S + P +GR IAV G E Sbjct: 358 --LGQPFSVLVDYAHNPDSFE-----QVMSMLRPLTQGRLIAVFGSAGE----RDLAKRP 406 Query: 392 LAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVH-----YSETMDGLFLFI 437 + ++ ++L+ A + + Sbjct: 407 IQGQIAAKWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQA 466 Query: 438 QSSLVDGDVVVV--KS 451 ++ GDVV++ K Sbjct: 467 LATAQAGDVVLLLGKG 482 >gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] Length = 486 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 142/473 (30%), Gaps = 42/473 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL +I + + ++IDSR I AF IKG DGHDF A +G Sbjct: 1 MNSKELLASIPYKQVKGPLPEHIEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A L++ M + V V+ L LA +I +TG+ GKT+ Sbjct: 61 ATLIITEKPMTID----NATVVEVESTSRTLGLLAAKFYDYPSKLLHMIGVTGTNGKTSV 116 Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 +L L + S N V T + D + M Sbjct: 117 AGILHSMLMELGEKSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARARDEDCSHMTME 176 Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V A+ T + HL +EE AKA +F L + Sbjct: 177 VSSHGLVLGRLAGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAI 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + +Y++G +A FQ + + + + V + Sbjct: 237 LNADDPWSKELAKMTPHPVYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMKLL 296 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L ++ + +D +KAL+ P EGR ++ F + +A Sbjct: 297 GEFNVSNALASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAPISIFIDYAHTPDA 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ A G G + +V L+ Sbjct: 357 IEKAIDAVQDFKKSRIIFLVGT-----------GGNRDKTKRPIMA-AKASIADYVVLTT 404 Query: 409 FHVLALK--------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GD++++ K Sbjct: 405 DDPRDEAYDSILGDLEVGMTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKG 457 >gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 488 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 142/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELPPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] Length = 493 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 81/470 (17%), Positives = 156/470 (33%), Gaps = 41/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L +G G P + G+++DSR + F A+ G G +FI A++ GA Sbjct: 8 LSELALTARG---GANPD--ITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAA 62 Query: 67 LVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 ++ + + + + +D AL A TI+A+TG+ GKT+ Sbjct: 63 AILTDARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSV 122 Query: 123 KEMLTIALSSIK-----------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGM 169 + + + + + + + G+ + Sbjct: 123 ASFVRQIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEA 182 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + V A + HL E +AKA +F+ + I + Sbjct: 183 SSHGLEQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLG 242 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + I + G + AD L + + + +GK + + IG Sbjct: 243 DPKGAEMRRIAEARGQNILTVG-PEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIG 301 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A+N+L+ G+V D D L GR + N +D ++ + Sbjct: 302 GFQAENVLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGA-AVFVDYAHTPD 360 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 + L + PH GR IA++G G + L + N V+++ Sbjct: 361 AVAT-----ALKAMRPHVMGRLIAIVGA----GGDRDATKRPLMGKAAADNADLVFVTDD 411 Query: 409 ----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +++ A + + L +L GD +++ K Sbjct: 412 NPRSEDPASIRTAVMLGAPDATEVGDRAEAILRGIDALQPGDALLIAGKG 461 >gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] Length = 508 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 90/494 (18%), Positives = 163/494 (32%), Gaps = 71/494 (14%) Query: 5 WTFHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++ + QG ++ ++ DSR + P FFA++G DGHD+ AV+ Sbjct: 1 MKLSQIVADVTSQGEL---AADVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVE 57 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 +GA VVV + I VDD A+ + A I+ +TG+ GKT Sbjct: 58 RGAVAVVVEQPVD---LPDEIVQVVVDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKT 114 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGI 164 T +L L T A +G+ +N +G A D + Sbjct: 115 TMTYLLESVLKQAGYTPAVVGTISNRMGDDAVEAEHTTPESLDLQRILAEFKSQGADALV 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222 E+ SH + L +AV T + P HL +E A + + T Sbjct: 175 IEV-SSHALMQSRVVGLT-FDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKEPQIYGDFT 232 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + L + + S G + AD ++ +Q + + ++ + Sbjct: 233 AVVNTDDPYGAKLVRELNEP-----LSVGMHRGADVRVCDVEQTMQGTVATLETPQGEIT 287 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V +G +N+L +G +L + T + L+ + GR + L Sbjct: 288 VRSPLVGPFNLENLLCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPVDNTLGALIVVDY 347 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + A L ++ R I V G G + ++ Sbjct: 348 AHT-------GDALAKALEAMAALKPQRIITVFG----CGGDRDTLKRPAMGEVAGRYSD 396 Query: 403 HVWLSG-----FHVLALKDALPRSIH------------------VHYSETMDGLFLFIQS 439 ++ + + D + I E ++ + Sbjct: 397 LSIVTSDNPRTENPAKIIDDIKVGIERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVN 456 Query: 440 SLVDGDVVVV--KS 451 L GD++++ K Sbjct: 457 QLRAGDLLLIAGKG 470 >gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus kaustophilus HTA426] gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Geobacillus kaustophilus HTA426] Length = 489 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 147/477 (30%), Gaps = 46/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + G + + + +DSR +A FF +KG DGHDF AV +G Sbjct: 1 MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + S+ +PV V D A+ LA A R + +I +TG+ GKTTT Sbjct: 61 AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ K IG+ + +G + + E + Sbjct: 116 TSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S + H +AV T + HL +EE A G Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + I ++G + +D + + + + S V Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L ++T AL+ P GR + N + Sbjct: 296 LVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ++ + L + + V+G G L +++ Sbjct: 356 DS-------LENALKTVRQLAKRNVYVVIG----CGGDRDPSKRPLMAQVAVRYADVAIF 404 Query: 407 S-----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + +GDVV++ K Sbjct: 405 TSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461 >gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 144 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 8/150 (5%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R++ A ++A+TGS GKT Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP 150 + KEM LS T ++NN IGVP Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVP 142 >gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1] gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseiflexus sp. RS-1] Length = 509 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 134/491 (27%), Gaps = 57/491 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H++L+ + + + G+ DSR++ P F A +G H DGH +I A+++G Sbjct: 1 MRLHEILKHLCEPAHMPPVNPEIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-------------- 110 A VV A G + +P V + AL LA A + Sbjct: 61 AAAVVYEDP--AWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMRIVGVTGTDGKTTT 118 Query: 111 --IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVDFGI 164 + ++ I + S + P + + Sbjct: 119 TFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLRDMAEAGCSYAV 178 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L IAV T + HL +E+ KA +FE L + Sbjct: 179 IEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFNDAA 238 Query: 225 LNYDDSFFELLKAKSHALGIK--------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + ++ A + ++ +AD + + + V Sbjct: 239 APFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDVRSTRDGLRFRVTT 298 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + + G N L L + ++ + AL GR +R Sbjct: 299 PWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERVPGVRGRMERIEAGQPF 358 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + A + + P EG+ IAV G E L + Sbjct: 359 TVLVDYAHTPGA-------FEKLFRIVRPLTEGQVIAVFGSAGE----RDRAKRPLQGEI 407 Query: 397 SLYNISHVWLSGFHVL--------------ALKDALPRSIHVHYSETMDGLFLFIQSSLV 442 + V ++ A + Sbjct: 408 AGRFCDLVIVTDEDPRLEDRAAIIAEIAAGAEAVGKRIGETCLCIPDRALAIRTAFAYAR 467 Query: 443 DGDVVVV--KS 451 GD+V++ K Sbjct: 468 PGDIVLLLGKG 478 >gi|58038639|ref|YP_190603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Gluconobacter oxydans 621H] gi|58001053|gb|AAW59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Gluconobacter oxydans 621H] Length = 373 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 9/371 (2%) Query: 94 ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 AL L AR R + ++AITGSVGKTTTK+ML +ALS+I T+A + SYNNH GVPLTL Sbjct: 3 ALVDLGRNARARFRGKVVAITGSVGKTTTKDMLKVALSAIGPTHAAVASYNNHWGVPLTL 62 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 AR+P D F I E+GM+H+GEI L VRP +A+ITTI AHL + IE IA K+++ Sbjct: 63 ARLPQDARFCISEIGMNHIGEIAPLAAQVRPDVAIITTIGTAHLGHMGSIEAIAQEKSDL 122 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 F L G + D + E + A ++ G S+ A ++ +E S Sbjct: 123 FSALSDKGIAIVPDDAAGQEHFQTALPAGCA--LWRSGFSETAQLRIENLHCSAEGSHFS 180 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + L V G H+A+N + LG V+ L DV A AL F P GR + Sbjct: 181 LHLPSGIQNVTLTAPGEHLARNAALALGAVAALGEDVAVAATALQNFVPGAGR---GQMR 237 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 L+DESYNA+ S++AA++ L+ + IA LGD+ E+G + + H LA Sbjct: 238 TILNDVRLLDESYNASTPSVRAALATLALLPAQR---HIAALGDIRELGTFADAEHRSLA 294 Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 + + + G H+ AL DALP + Y+ L + +L GD+++VK S Sbjct: 295 DAVQNAKA-IAFCCGPHMRALYDALPSELQGGYAADAASLAPLLLKALRPGDLLLVKGSF 353 Query: 454 SCGFYRLINLL 464 +I++L Sbjct: 354 GSRMRDVISVL 364 >gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] Length = 494 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 141/459 (30%), Gaps = 34/459 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73 G + + GI++DSR + F A+ G G F A+ GA ++ + Sbjct: 13 GLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGA 72 Query: 74 --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + ++ + V+D AL A T++A+TG+ GKT+ + Sbjct: 73 QIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWV 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFL 178 + +G+ L + + S G + Sbjct: 133 ELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLEQRR 192 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL E +AKA +F + + + D Sbjct: 193 LDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRA 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + S G+ D L + + M K + + IG A+N+L+ Sbjct: 253 VAAARGHEVISVGR-GLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENILL 311 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D L GR + N +D ++ + + Sbjct: 312 ACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGA-TVFVDYAHTPDAVAT----- 365 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 + + PH GR +A++G G + L + N V ++ Sbjct: 366 AIKALRPHVLGRLVAIVGA----GGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAV 421 Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ L +L GD +++ Sbjct: 422 IRAAVKGGAPDAMEVGDRAEAILRGVDALGAGDALLICG 460 >gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] Length = 490 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 77/473 (16%), Positives = 144/473 (30%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ + + E+ V+++ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIE 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 Q + + V A ++ K G+ + + Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL+ + P GR I V G G + ++ V + Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] Length = 512 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 84/480 (17%), Positives = 147/480 (30%), Gaps = 45/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T L + + + GI DSR + F I G H DGH FI AV Sbjct: 14 MKTIGQLADLLTDAVVIGNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAA 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V + V I V V ++ AL+ + K ++ ITG+ GKTT Sbjct: 74 GASAIVTTREDVE--VPEGIAVLRVKELQPALDTIVPYFHDYPARKMRVVGITGTNGKTT 131 Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167 T + L I +P+ M D + Sbjct: 132 TSYITRAILRKAGYKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVM 191 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LN 226 +S + + AV T + HL ++ AKA++F+ + +TG Sbjct: 192 EVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKT 251 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVH 285 + + + A A ++ K AD + + + + + M + Sbjct: 252 AVVNIDDAVGATMLAHAKCKHLTYAIEKEADLRATDILVHANGAEFVLHHESFGEMPLKL 311 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H G N++ +G D + L F GR + + + + Sbjct: 312 HITGIFNVYNVMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKAGQDFSIIVDYAHT 371 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + +VL + R IAV G G + L+ V Sbjct: 372 PDG-------VENVLKTARKIAKKRIIAVFG----CGGDRDRTKRPIMGRLAAELADVVI 420 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + +++ + +I + E D+VV+ K Sbjct: 421 ATSDNPRTEDPEFILSQVEEGVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKG 480 >gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] Length = 490 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 78/473 (16%), Positives = 144/473 (30%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA +V D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ + + E+ V+++ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIE 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 Q + + V A ++ K G+ + + Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL+ + P GR I V G G + ++ V + Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] Length = 506 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 158/476 (33%), Gaps = 44/476 (9%) Query: 7 FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +LL I+ I + + IS DSR+I AF I+G DGH F+ A + GA Sbjct: 17 AGELLSYIKVKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGA 76 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123 GL + + D+ G IPV V D L + L+ + + + ITG+ GKTTT Sbjct: 77 GLFIASKDIADKAG--DIPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTS 134 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFEL 167 ++ ++ IG+ ++ IG + D + E+ Sbjct: 135 YLINHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEV 194 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFL 225 SH + + AV T ++ HL + A K G Sbjct: 195 -SSHALALDRVIGC-DFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLK 252 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + A + ++G DF K + ++ G +V Sbjct: 253 TAVLNIDDKYSEEYKAHTPAEVITYGIDDKTADFYADKIFFDDWKMRFDLHFLGDVYKVE 312 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G N+L + V AI+AL F GR + N Sbjct: 313 TNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMETVHTDKNYKIIIDFAH 372 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + + VL ++ R I ++G G S DL + + V Sbjct: 373 TPDG-------LMKVLETLNKVPHNRIITLIGHSG--GNRDSSMRPDLGRIALENSDEVV 423 Query: 405 WLSG----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + + L + E + + D+V++ K Sbjct: 424 FTADNPRNESVEHIVEGLVSDCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKG 479 >gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] Length = 486 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 +V G S V D AL L ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + Y + P +L V+ + +S Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL +E AK + F+ L N DD Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ ADF+ + + E + + + + H +G Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G L D + + LS GR + + L + +A Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL G+GR I V+G G L + V L+ + Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAAKLSDQVILTSDN 403 Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKG 457 >gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis ATCC 23445] gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 3 str. Tulya] gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC 23445] gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] Length = 488 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] Length = 503 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 87/473 (18%), Positives = 153/473 (32%), Gaps = 44/473 (9%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L A+ G + + G+S+DSR + FFA+ G G DFI +A++ GA ++ Sbjct: 12 LAALGLRGQGGR-EATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILT 70 Query: 71 NTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + + + +D GAL A T+IA+TG+ GKT+ Sbjct: 71 DAQGAQIAANELAESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFA 130 Query: 127 TIALSSIK--------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 + T+ + I + TLA + + + S Sbjct: 131 RQIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVA-VEASSH 189 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + V A T + HL E AK +F L + + D Sbjct: 190 GLDQRRLDGVVLSAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPK 249 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + + G+ +A +L + S + Q S IG Sbjct: 250 GPEVVQIAQNRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQ 309 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+L+ +V D + L GR + N G +D ++ + + Sbjct: 310 ADNVLLATALVIAAGGDPEEVFDTLPYLTTVRGRMQHAATRRN-GGSVFVDYAHTPDAVA 368 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 L + PH G+ IA++G G + L + N V+++ Sbjct: 369 T-----ALMAMRPHVMGKLIAIVGA----GGDRDTGKRPLMGQAAAQNADMVFVTDDNPR 419 Query: 409 -FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A+ V L +L GD +++ K Sbjct: 420 SEDPATIRAAVMVGALENAAGKSVIEVGDRAEAILRGVDALGPGDALLIAGKG 472 >gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] Length = 493 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 168/474 (35%), Gaps = 38/474 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L G + Q + G+++DSR + P F A+ G G +FI +A Sbjct: 1 MGQIKTLAAL-----GLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYA 55 Query: 61 VQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +++GAG ++ + + + +D L A T+IA+TG+ Sbjct: 56 LRQGAGAILTDATGARLAQDFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGT 115 Query: 117 VGKTTTKEMLTIALSS------IKKTYACIGSYNNHIGV----PLTLARMPVDVDFGIF- 165 GKT+ T G+Y+ +G P+TL RM + Sbjct: 116 NGKTSVATFTRQIWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVT 175 Query: 166 --ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + S G + V A T HL + +E +AKA +F + + Sbjct: 176 HGAMEASSHGLAQRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGV 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + D A + + + G++ AD +L + + + + + + ++ Sbjct: 236 AVINIDDPRGAEMAAIATERGQDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQL 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A+N+L+ G+V AD + + L GR + N +D Sbjct: 296 RLDLIGGFQAENVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGA-AVFVD 354 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ + + + + PH GR IA++G G L + + Sbjct: 355 YAHTPDAVAT-----AIKALRPHVMGRLIAIVGA----GGDRDRAKRPLMGQAAAAHADR 405 Query: 404 VWLSG-----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V ++ + +++ A+ + L +L GD +++ Sbjct: 406 VIVTDDNPRSENPASIRAAVMQGCPKATDVGDRAEAILRGVDALGPGDALLICG 459 >gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia rickettsii] gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] Length = 479 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA LV+ + I V Sbjct: 14 VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V DV AL + + +IA+TG+ GK++ + S + K A IG+ Sbjct: 70 YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129 Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 VP + +++ +FE S G + ++ +I Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T+ + HL E AK ++F I + D Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNVK 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + + + + + IG A N+L+ + + + Sbjct: 248 FITVGTKGDLEITRLNCSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D I +L +GR +R + ++ +K Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417 + + V G G L ++ + ++ + + Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + + ++L D+++V K Sbjct: 414 IEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448 >gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti B1/94] Length = 488 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 84/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +D ++ Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL+ + P GR I V G G + ++ V ++ + Sbjct: 356 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 269 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 6/248 (2%) Query: 8 HDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + G + P+ G++ DSR P + + A+ G DGHDF+ A+ GA Sbjct: 6 KQIAACTGGSFVVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65 Query: 66 GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + ++ L V V D A+ +A R +IA+TGS GKTT Sbjct: 66 VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 TK ++ L+S T A G+ NN +GVP TL D + E+GM G++ L Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 VRP ++ + +H+ E IA AKAE+ L + D + + Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245 Query: 242 LGIKTIYS 249 L + + + Sbjct: 246 LDARRVET 253 >gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] Length = 499 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 157/473 (33%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 10 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 67 VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 362 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 363 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466 >gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium medicae WSM419] gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae WSM419] Length = 486 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 75/460 (16%), Positives = 145/460 (31%), Gaps = 36/460 (7%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G + GI+ DSR + P + F A+ G DG +I A+ +GA VV Sbjct: 14 LSAQLKGDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYITDALSRGASAVVA--- 70 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 ++ I VF + + L K + + R T++A+TG+ GKT+ + Sbjct: 71 GTSARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130 Query: 134 KKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLT 179 + A I + P++L ++ + D G+ + S G + Sbjct: 131 GFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQQRL 190 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V A T + H+ +E ++K +F L G+ + + D + + Sbjct: 191 DGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLPKGSPAVIFADDQWSADAIAA 250 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G++ + R +QS V + Sbjct: 251 ARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDIYEIHV----PLAGDFQVANA 306 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + +A A S +G R L Y P ++ + Sbjct: 307 LVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAYVDYAHKPDALSNVLES 366 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413 + P GR + V G G + ++ V ++ + + Sbjct: 367 ---LRPFTTGRVVVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDNPRSEVPEVI 419 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 420 RAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKG 459 >gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] Length = 491 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 96/479 (20%), Positives = 166/479 (34%), Gaps = 51/479 (10%) Query: 4 LWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + ++++ I+ H I + GI+ DSR + FFA+ G DG ++I A+ Sbjct: 1 MKKLKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAI 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 KGA V + +P+ V ++L L+K++ II +TG+ GK Sbjct: 61 SKGASAVFLE---GEVNNIYGVPLVRVREILDVLSKVSSYFYDFPSKYLNIIGVTGTNGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGIF 165 TTT +L S IG+ P R VD + Sbjct: 118 TTTTNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTPQPQDLQEILRKMVDREVKFL 177 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + AV T + HL +EE AK +IF LE G + Sbjct: 178 AMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLEDGGFAVI 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N D+ + + + KN D L+K + + +E+ + + Sbjct: 238 NRDNEWTGRI------SLPNRRVFWVSLKNGDLYLKKHENTNNGMLLEIGTPLGDLIIDT 291 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N+L +G++ L ++ K LS F +GR + R N + Sbjct: 292 KLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREGQNFDVIVDYAHT 351 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + +VL + +GR I V G G D +S V Sbjct: 352 PDG-------LFNVLQTVKEFTKGRVIVVFG----CGGDRDPTKRDKMGEISARLADIVI 400 Query: 406 LSGFH---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + +++ + R Y E + +GD V++ K Sbjct: 401 VTSDNPRTEDPLKIIRQIEEGIRRVGRSDYFVIENREEAIKKAIEIAGEGDSVLIAGKG 459 >gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] Length = 490 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 158/473 (33%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] Length = 483 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 82/477 (17%), Positives = 152/477 (31%), Gaps = 50/477 (10%) Query: 5 WTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++LL+ IG + G++IDSR I F A+KG DGH FI A++ Sbjct: 1 MKLNELLKNITPIKIIGND-DVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIEL 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+ + + I V+ A+ K+A K ++ +TG+ GKTT Sbjct: 60 GAISVLCED--LPEVLQEGITYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167 +L + + +Y + + VP V+ + Sbjct: 118 IATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + ++ A+ T + HL E +AK F+GL K N Sbjct: 178 ECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNA 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A T+ ++ ADF+ R + E ++E+ + ++ + Sbjct: 238 DDKNGMIMVQNTKA----TVKTYSIRTLADFRARILECHFEGMYLEIDGREVGVQFIGKF 293 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 ++ + + DV + L + + + ++ Sbjct: 294 NVSNLLAVYGAAIMLGK-KPEDVLLVLSTLHSVNGRLEPIHSPEGFTAIVDYAHTPDALA 352 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++ + G+G I V G G L ++ V ++ Sbjct: 353 NVLNAIHEVLD--------GKGHVITVCGA----GGNRDKGKRPLMAQEAVRQSDKVIIT 400 Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L V GDVV+V K Sbjct: 401 SDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457 >gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] Length = 479 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 145/455 (31%), Gaps = 50/455 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA LV+ + I V Sbjct: 14 VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--------------SS 132 V DV AL + + +IA+TG+ GK++ + Sbjct: 70 YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129 Query: 133 IKKTYACIGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 I I + R +++ +FE S G + ++ +I Sbjct: 130 IFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T+ + HL E AK ++F I + D Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + + + + + IG A N+L+ + + + Sbjct: 248 FITVGTKGDLEITRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D I +L +GR +R + ++ +K Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421 + + V G G L ++ + ++ ++ A+ Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAAIISG 413 Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 I + + ++L D+++V K Sbjct: 414 IEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448 >gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] Length = 486 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 +V G S V D AL L ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + Y + P +L V+ + +S Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL +E AK + F+ L N DD Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ ADF+ + + E + + + + H +G Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G L D + + LS GR + + L + +A Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL G+GR I V+G G L + V L+ + Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAAKLSDQVILTSDN 403 Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457 >gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] Length = 495 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 74/482 (15%), Positives = 143/482 (29%), Gaps = 55/482 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + + GI DSR + P + F + G DGHD+ AV GA Sbjct: 3 LQQLASLLAVSRVMGDGTVDCRGIGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 +VV ++ + +P V D A+ LA +I ITG+ GKTT Sbjct: 63 ALVVEREL-----DVPVPQLVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITY 117 Query: 125 MLTIALSSIKKTYACIGSYNNHI--------GVPLTLARMP--------VDVDFGIFELG 168 ++ + IG+ G + V + E+ Sbjct: 118 LIEKIMQDAGVNTGLIGTIQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEV- 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA----KAEIFEGLEKTGTIF 224 SH E + A+ T + HL + +EE +A + + + + Sbjct: 177 SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNS 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + A + ++G K++D Q + ++ + V ++ Sbjct: 236 KYAVLNADDPASSYLQAQTAAQVITYGVEKDSDVQASRITISAKGTSFHVSTFKGETDIE 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + + + ++L +GR + Sbjct: 296 LRMVGKFNVYNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAH 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + +VL + G+ V G G L ++ H Sbjct: 356 TPDG-------LENVLRTVKEFATGKVWCVFG----CGGDRDRTKRPLMGKIAARYSDHS 404 Query: 405 WLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV-- 449 +++ + ++ L + E DVV++ Sbjct: 405 FITSDNPRTEDPIVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] Length = 487 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 145/473 (30%), Gaps = 41/473 (8%) Query: 5 WTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 D+ G G + + G+S DSR +AP AF A+ G DG FI A Sbjct: 1 MNLRDIAGNTFPELNGQVGGALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFIADA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA +V+ P+ VD+ L A + T++A+TG+ GKT Sbjct: 61 VSRGASVVIA----GNGAAVTGAPLLTVDEPRRFLAVAASRFYGKQPETMVAVTGTAGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE-- 166 + + A IG+ + D G+ Sbjct: 117 SVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALADEGVTHAA 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G +F VR A T + H+ +E+ +AK +F L G+ + Sbjct: 177 MEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLPKGSPAVI 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D + + + I + G+ + R +Q + Sbjct: 237 FADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDIFEIHI-- 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + L + + A A++ G R + L Y Sbjct: 295 --PLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAYVDY 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P ++ +VL+ + P GR I V G G + ++ V + Sbjct: 353 AHKPDAL---ENVLTSVRPFTTGRIIVVFG----CGGDRDRGKRPIMGEIACRLADVVIV 405 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S L GD ++V K Sbjct: 406 TDDNPRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKG 458 >gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] Length = 490 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 3 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 62 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 120 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 180 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 239 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 240 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 297 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 357 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] Length = 488 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 144/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] Length = 479 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 85/465 (18%), Positives = 146/465 (31%), Gaps = 57/465 (12%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + V I+ +S+ + P + FFAIKG DG+DFI AV KGA VV Sbjct: 7 FNTDSEVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGAVAVVSTEPAKKKY 66 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +P F VDD+ A+ K AV I ITG+ GKT+ +L + Sbjct: 67 P---VPYFQVDDIDLAMAKAAVKFYKNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIP 123 Query: 137 YACIGSYNNHIGVP---------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + IG+ N I + + + +S Sbjct: 124 CSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKRVFG 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + +A+ T + H+ E + E + T +N DD + L Sbjct: 184 LNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQYGLRLAD 243 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 K A S +++N L + + +G H N + Sbjct: 244 KIKAKTTLIPVSLVEAENVKESLNGVTFSYKG-----------ESASINLLGKHNLYNAV 292 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + D+ TA+K ++ GR +R F + + + Sbjct: 293 FAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRVNKGQPFYVFVDFAYTTES-------LM 345 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412 + P+ G I V G G L + + N SHV L+ + Sbjct: 346 KAYETLEPYKNGNIITVFG----CGGDRDRTKRPLMGLAACQNSSHVLLTNDNPRTEDQQ 401 Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + D++++ K Sbjct: 402 QIFNDILNGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKG 446 >gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] Length = 483 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 154/469 (32%), Gaps = 40/469 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +DLL + + + V G+++DSR + P F A+ G G DFI A+ G Sbjct: 1 MTLNDLL--LDEGLVVEGGEQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +++ + + A +PV V + L ++A R I+AITG+ GK++T E Sbjct: 59 ASVILTDEPVEAP-----VPVIAVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVE 113 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMS 170 L + AC+G+ G + + + + S Sbjct: 114 FLRQIWAGAGIEAACLGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEAS 173 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR + T + HL + ++K ++F + DS Sbjct: 174 SHGLKQHRMDGVRLQVGAFTNLTQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDS 233 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + A S + + G + +D +R+ + + +G+ + +G Sbjct: 234 EWGGKMAASARERGLEVLTMG-WRGSDLAIREITPRAASQSVIFAWKGREHALDIPLVGE 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L I + + L GR + Y P Sbjct: 293 FQILNALGAAAIALSDGVAEASVLDTLKGLAGVPGR---LEKVGETAAGAPVLVDYAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 + + PH GR I + G G + V++ HV ++ Sbjct: 350 DGLDKLLRAA---RPHTRGRVIVIFG----CGGDRDASKRAKMGVIAANQADHVIVTDDN 402 Query: 409 ---FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + + L GD +++ K Sbjct: 403 PRSEDPAAIRKAVLKGCPRAEEIADRAQAIRHGVAMLKAGDCLLIAGKG 451 >gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 80/475 (16%), Positives = 149/475 (31%), Gaps = 42/475 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ I + + ++GI +S+ IAP F A KG +DG +I A+ G Sbjct: 1 MKLKKVLKDIPVVQVKGSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +V + + I +V + + I+ ITG+ GKTTT Sbjct: 61 ATAIVTD---IYDPSFKEITQIICKNVAEVEGRFSANFYQMPSQELFIVGITGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIR---- 176 ++ L + IG+ +G A + M H G Sbjct: 118 SFLVKYLLEQLNLPCGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVME 177 Query: 177 --------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + IA+ T + HL +E A+AK ++F L++ + Sbjct: 178 VTSHALDQKRVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQI 237 Query: 229 DSFFEL-LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + I++FG AD + + +++ QG+S Sbjct: 238 IANLDCPWFETILKGIKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHYQGRSYSTFFPL 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG N L + + ++ I F P GR + + L+ F + + Sbjct: 298 IGRFNIYNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLFVDFAHTED 357 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A +++ + +G+ I V G G S ++ Sbjct: 358 ALYKALECLSEL-------KKGKIITVFG----CGGDRDKTKRPKMAQASASFSDLTIVT 406 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + F GD+++V K Sbjct: 407 SDNPRSEDPLKIIQEIAEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKG 461 >gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] Length = 495 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 89/480 (18%), Positives = 158/480 (32%), Gaps = 52/480 (10%) Query: 7 FHDL--LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L L+ I+G+ G ++ ++ DSR + P FF I G DGH F A +KG Sbjct: 6 LAQLIYLKKIEGNLSG----VTIDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V + + +G PV V DV + LA +I +TG+ GKTT Sbjct: 62 AVAFVASKSIKNQVGDT--PVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTV 119 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------L 167 M+ L K A IG+ IG P + + + Sbjct: 120 THMIDALLEKPNKPTALIGTIYRKIG-PKIIQTHNTTPEILTLHETFQELKEIGGETCLM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224 +S + V T + HL +E+ A AK + Sbjct: 179 EVSSHALQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKP 238 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEV 283 + + + S+G ++ ADF+ + + + E V + V Sbjct: 239 KVAVLNADDEQFQMFEYSTPVQVISYGINEEADFKAENIRTENGHTIFELVIQNDERYLV 298 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G NML + + + ++ +K + F GR + + Sbjct: 299 DMPLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQSVDKGQDFQVIVDFA 358 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + +VL ++ G+ I V+G G S +L ++L H Sbjct: 359 HTPDG-------LENVLDSLAQIPHGKIITVVGHSG--GNRDSSMRPELGR-IALTKSDH 408 Query: 404 VWLSGFHVL-----ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + + + + L +S+ + + GD+V++ K Sbjct: 409 VVFTADNPRTEPLVNIYEGLLSAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKG 468 >gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] Length = 479 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA LV+ + I V Sbjct: 14 VKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V DV AL + + +IA+TG+ GK++ + S + K A IG+ Sbjct: 70 YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129 Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 VP + +++ +FE S G + ++ +I Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T+ + HL E AK ++F I + D Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + + + + + IG A N+L+ + + + Sbjct: 248 FITVGTKGDLEITRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D I +L +GR +R + ++ +K Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417 + + V G G L ++ + ++ + + Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + + ++L D+++V K Sbjct: 414 IEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448 >gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 481 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 157/476 (32%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ ++ ++ + V + IDSR + P F AIKG DGH FI AV +G Sbjct: 1 MTLSSILKNVKPLNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+ T + + + V+ A+ +A K ++ +TG+ GKTT Sbjct: 61 AVAVLCET--MPAELPQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y +P V+ + Sbjct: 119 ATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + V + + HL E +AK F+ L K N D Sbjct: 179 CSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ ADF+ + + E + L+ EV I Sbjct: 239 DKNGMVMVQNTRA----TVKTYSTRSMADFKAKILECHFEG----MYLEINGAEVGVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L + + +S H GR + R + +A Sbjct: 291 GKFNVSNLLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPLRSPEGYTVIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G+ I V G G L V ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGKVITVCGA----GGNRDKGKRPLMAVEAVKQSDRVIITS 401 Query: 409 -----FHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + V GDVV+V K Sbjct: 402 DNPRFEDPQAIINDMLAGLNAQQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKG 457 >gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 493 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 83/464 (17%), Positives = 141/464 (30%), Gaps = 48/464 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G V + + +DSR I AF I G DGHD++ AV+ GA + + ++ G Sbjct: 17 GEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAIFTSKPLMKEYG 76 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V+D AL LAV +I +TG+ GKTT +L +K Sbjct: 77 ---VPIIQVEDTNRALAMLAVKYYDYPTKHFPLIGVTGTNGKTTVTYLLDKIFEYHQKKA 133 Query: 138 ACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 IG+ IG DV GI E+ L R Sbjct: 134 GVIGTIQVKIGEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGRVYGCD 193 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 IAV T ++ HL I++ A + G + + Sbjct: 194 YD--IAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAIINDDDSSSHLL 251 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + ++ K A + + + ++ ++ + +G NML Sbjct: 252 KRSTAQHVITYSCKKEATIMAKDIELTASGIRFKLHSPLGNITIQSRLMGMFNVYNMLAA 311 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 ++ +AL GR + N + ++ +V Sbjct: 312 SAAAIASKVPLNVIQQALESIEGVNGRFEPIVEGQNYSVIVDFAHTPDS-------LENV 364 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414 L I + V+G G L ++L H + A+ Sbjct: 365 LQTIKDFAKRNVYVVVG----CGGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDPQAI 420 Query: 415 KDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 D + S S D+V++ K Sbjct: 421 LDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKG 464 >gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] Length = 490 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 90/475 (18%), Positives = 171/475 (36%), Gaps = 46/475 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + + I + + + GI DSR I F A+KG DGH+FI A+ GA +++ Sbjct: 4 IFENISHTVLHKGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMII 63 Query: 70 VNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125 V ++ I V+DV L +A + K II ITG+ GKTT+ + Sbjct: 64 VEENIEVSKYDKYEDISFVFVEDVRKHLGIIASNYYGYPQDKIKIIGITGTNGKTTSSYI 123 Query: 126 LTIALSSIKKTYACIGS-----YNNHIGVPLT-------LARMPVDVDFGIFELGMSHLG 173 L L + + P + + V++ I E+ SH Sbjct: 124 LENILEKTARIGTTGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEV-SSHAL 182 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI + ++++ A+ T + HL +E +AK +IF L +GT +N DD + + Sbjct: 183 EIGRV-NMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFSMLRNSGTGTVNIDDGYGK 241 Query: 234 LLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + K A + K KNAD + ++ +++ K + +G + Sbjct: 242 RIIEEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYN 301 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L L +++ I+ L GR + + N + + Sbjct: 302 LYNVLGCAASALALGIEIEKIIEKLQKMPSVPGRFETVKNNKNARIVVDYAHTDDG---- 357 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++ + + R I V G G+ +A+ + ++ + L+ + Sbjct: 358 ---LTNIGKTLRKITDNRVITVFGA---GGDRDNKKRPKMAKAAAEFS-DFIILTSDNPR 410 Query: 413 A-------------LKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451 L + E + + + +GD +++ K Sbjct: 411 TENPANILKEVEAGLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKG 465 >gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 487 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 82/459 (17%), Positives = 151/459 (32%), Gaps = 40/459 (8%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 P + G+ DSR I P + +F + G +DGH F+ V+KGA +V D+ Sbjct: 6 LFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKDI--E 63 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK 135 + V++V LN +A T+ +TG+ GK+T ++ S K Sbjct: 64 TMHKGVAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIKDVYSHFKP 123 Query: 136 T-------------YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + + VD L +S G V Sbjct: 124 CGYIGTISISYGDVTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGLEMGRVQSV 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV T + HL +E AK ++F L+ G +N DD + A Sbjct: 184 DFDVAVFTNLTYDHLDFHGTLENYFEAKHKLFLQLKSDGVAVINVDDP----FAKRMVAG 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I S+G + +AD++ + S ++ G++ + + + + N+L + Sbjct: 240 CKAHIVSYGVTADADYRGDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYNLLGAIAA 299 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + + LS +GR +R + P M+ + Sbjct: 300 MCESGVALKEIVPYLSELTQVDGRMERIDEGQAFNVIVD----FAHTPDGMEKVFEFANS 355 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417 I+P IAV G + + ++ + L+ + + + Sbjct: 356 ITPD-GNAIIAVFGSAG----KRDTKKRKVFGEIADRYCDSIILTEDDPRDENPRDIANE 410 Query: 418 LPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I + E S D V++ K Sbjct: 411 IKGGIKDTNNIFIEDRYSAIRQAIESANVNDTVLILGKG 449 >gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1] Length = 465 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 103/459 (22%), Positives = 184/459 (40%), Gaps = 21/459 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFF-AIKGPHYD--GHDFI 57 M L ++L I G I + + + S + FF KG D + + Sbjct: 1 MKALP-LKEILAVIDGEVIAGSSEFEIIDVKTSSPGLRNGTLFFHTKKGLTIDQNFNRY- 58 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 K +V + + + ++ + VD+ + AL R ++ ITG+ Sbjct: 59 -----KKRVAIVTDKKIDLDQLNDNVTLITVDNSVNALASFTSYYRGLFTIPVVGITGTA 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEML L + S N + L + D D +FE+G+S+ G IR Sbjct: 114 GKTTTKEMLAHILRGEQNVQCTYKSMNGIVLNLKYLLGINEDTDVAVFEMGVSYPGNIRK 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + +P I +IT I AHL +E AK E+ E L+ G + LN DD E +K Sbjct: 174 SGAVFKPSIGMITNIGTAHLETCKTLERYIGAKGEMLEALDYKGQLLLNSDD---ENIKK 230 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 +Y FG+ +++ + + +E+ ++ ++G S + V + Q + Sbjct: 231 IDLHPFKGQVYYFGQKSECAYRISQIEYAAEKMVFQLHVKGHSSKRV--YVPGLGEQCVY 288 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ + + + T+ID+++N+NP+S AA+ Sbjct: 289 NAAAAIAAAHLTGMDLSSCIERIGSFKQMERHVSVERGLNRATIIDDTWNSNPSSAYAAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD- 416 VL +I+ + + +AV G + +G H+ L + IS + G + D Sbjct: 349 KVLQKIAENKKS--VAVFGKLQRLGAKQHEEHVKLGARMKELGISCLITIGKDAQDIGDA 406 Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 A +V + + L + S + VV++K S Sbjct: 407 AIQAGIAQANVFNVLSAEELQEKLLSITDENTVVLLKMS 445 >gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] Length = 130 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + I G ++ + +S DSRS P + F A+KG +D HDF+ Sbjct: 1 MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ ++P V D AL LA R+R ++A+TGS GKT Sbjct: 60 AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115 Query: 121 TTK 123 T K Sbjct: 116 TVK 118 >gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] Length = 484 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ I + I ++GI++DSR I P F A+KG DGH +I A++KG Sbjct: 1 MKLEKIIKGITVNEIIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV + ++ V+D + KLA SK ++ +TG+ GKTT Sbjct: 61 ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168 +L I + N P + D + Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK F+GL KT N D Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++++ +DF+ + + E + L ++EV I Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R + +A Sbjct: 291 GRFNASNLLAVYGAACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G I V+G G L ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGHVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DV++V K Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457 >gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] Length = 485 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 76/453 (16%), Positives = 154/453 (33%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 NGI DSR I F A +G + DGHD+I AV+ GA ++V+ ++ ++ Sbjct: 18 DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKY---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +DD+ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134 Query: 142 SYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + +++ + E+ S ++ A Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEV--SSHSLELGRVDVIDFDCA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDDYGKRLYDEFIIDNPEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + + +++++ + + +V +G N L +GI + Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C + Y P ++ I I Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + + + L+ + +K Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITG 449 >gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] Length = 483 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 86/473 (18%), Positives = 157/473 (33%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LLQ I G VP V + DSR + + F A +G +DG+DF AV++G Sbjct: 1 MNLKELLQGISAKIYGKVPTLEVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ + LSI V +LA R K + +TG+ GKTT Sbjct: 61 AIAILSS----FYNPFLSIVQIVTSCVEQLEAELAAKFYGRPSEKLEVFGVTGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L K IG+ + +G + V + Sbjct: 117 TYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRKAVAME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +G T + ++T + HL +E +AK ++F L K G +N D Sbjct: 177 VSSIGLELNRTAQTSFDVGILTNVTLDHLDFHGTLENYLTAKEKLFSQLPKNGCAVINAD 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + ++ ++ ++G + A+++ + + + +GKS I Sbjct: 237 SPY----ASRFCSIASSRCVTYGIEEAAEYRACDLQLSLLGTRYTLVHRGKSYLCKSPLI 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L + V + + P + + Y Sbjct: 293 GRYNVYNTLAAIAAVHERSNQELPELLVALENAPLPKGRLEPVFSGPCPIYID----YAH 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ ++ L ++ +GR I V G G L ++ + + Sbjct: 349 TPDALDNVLATLKELMS-CQGRVIIVFG----CGGDRDRSKRKLMARVAERYGFSIVTTD 403 Query: 409 FHVL--------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + L S D DVV++ K Sbjct: 404 NPRKEDPEVIIHEICEGFTSQKYC-VEQDRKKAILRAISMASDKDVVLIAGKG 455 >gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer RA-YM] gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer RA-GD] Length = 486 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 152/475 (32%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL I V+ I DSR + + AIKG DGH FI AV+KGA Sbjct: 3 LRELLHNIPVLETIGALDVEVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V+ + I +I V ++ L +LA K ++ +TG+ GKT+ Sbjct: 63 VIVLED--LPEILDETITYIKVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSVST 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168 +L ++ A I + IG + + ++ E+ Sbjct: 121 LLFDVFKNLGYPSALISTVEYRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEV- 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + T + +A T I HL E + K F+ L + N D Sbjct: 180 -SSHGIHQNRTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNLPDSAVAITNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++ +D+ R + + + + Sbjct: 239 DKNGLVMLQNTKAKKK----TYALKTLSDYHGRLLEVDFNGMLLNFNGKEVWTSLT---- 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L+ GI L D + A+S GR + + F Y Sbjct: 291 GKFNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEGGIFFVVD----YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + +++I E G+ S ++ ++ + + + S Sbjct: 347 TPDALENILDSINEIRTKNERLISV----FGCGGDRDHSKRPEMGKIATQKSTLAIITSD 402 Query: 409 ----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + D+++V K Sbjct: 403 NPRTEDPNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKG 457 >gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 494 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 154/475 (32%), Gaps = 45/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ I I + + I DSR + P F I+G DGH FI A++KG Sbjct: 1 MKLMDLLEEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V DM G + V D + +L R +I +TG+ GKT+T Sbjct: 61 AIAIVAQKDM---TGLDGVTWVQVKDTRQVMAQLGSTFYGRPSQHLELIGVTGTNGKTST 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFE--LG 168 M+ L + ++ IG+ N IG A+ D + E + Sbjct: 118 TYMIKKILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKEMADEKVTECVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V T + P HL I+ AK ++F T + Sbjct: 178 VSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFY---LTTVANVINI 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + A+ ++ +FG K A + + ++ V Sbjct: 235 DDPHGAMIAEEVKKLKPSLITFGIKKQATVMAKNIATTLKDVTFDLVTPVGEARVTVKIP 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N L ++ + D ++ + GR + + Y Sbjct: 295 GIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPGRFESVLGIKDFSVIVD----YAH 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ I ++ H I V G G + +S ++ Sbjct: 351 TPDAIENVIQAAKNVTEHR---VITVFG----CGGDRDRTKRSVMGEISGSLSDLSVITS 403 Query: 409 FHVLA---------LKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + ++ ++ E + GD+V++ K Sbjct: 404 DNPRTEDPYKILMMIEAGIKKTKGLYTIIEDRREAIRYAMKEAKKGDIVLIAGKG 458 >gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis M5-90] Length = 490 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +Y Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAP------AY 348 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A +VL+ + P GR I V G G + ++ V + Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] Length = 492 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 145/477 (30%), Gaps = 45/477 (9%) Query: 4 LWTFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T L L A QG + +++DSR + F A+ G G +FI +A++ Sbjct: 1 MTTLTALGLTAAQGR------DATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALR 54 Query: 63 KGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 GA V+ + + + V +D L + A ++A+TG+ G Sbjct: 55 MGAAAVLTDAAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNG 114 Query: 119 KTTTKEMLTIALSSI-------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 KT+ + + + Sbjct: 115 KTSVSSFCRQIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHV 174 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + S G + V A T HL E +AK +F + + + Sbjct: 175 AMEASSHGLDQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAV 234 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D + A + + G+S +A +L + + + QG+ Sbjct: 235 VNLDDPKGPVVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARL 294 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 IG A+N+L+ G+V AD ALS GR + N +D + Sbjct: 295 ALIGGFQAENVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGA-AVFVDYA 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + L + PH GR +A++G G S L + V Sbjct: 354 HTPDAVET-----ALKALRPHVMGRIVAIIGA----GGDRDSTKRPLMGAAAAEFADSVI 404 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + A+ + L L GD +++ K Sbjct: 405 VTDDNPRSEDPASIRAAVLAGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKG 461 >gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM 16795] gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM 16795] Length = 175 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 1/170 (0%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L+ A G + +N + IDSR FFAI G DGH FI A++ Sbjct: 4 LSIEELVNATSGDLTSKSEEVTSINELVIDSRIANKNSVFFAIIGESLDGHKFINSAIEN 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 G ++ N I + + V++ AL +A + + I ITGSVGKT+T+ Sbjct: 64 GCKTIIKNKSNNFEIIGEDLNIIEVENTEFALGDIARYYKSKFDIPYIGITGSVGKTSTR 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 +M+ A+SS KT G+ NN GVPLTLA + + + E+GMS Sbjct: 124 DMVFSAVSSKFKTLKNTGNLNNQFGVPLTLANLDKSYECAVIEMGMSGFN 173 >gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] Length = 481 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 90/475 (18%), Positives = 162/475 (34%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+LQ + V+GI DSR + + F A +G DGH +I A++ GA Sbjct: 3 LDDILQNVILLKTIGNIDINVSGIQFDSRKVEAENVFVATRGTASDGHQYIATAIENGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124 +V + S + +I V+D AL K+A A +K T++ +TG+ GKTT Sbjct: 63 AIVCEE--LPSEINPNITYVKVEDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIFELGMS 170 +L + + + N L VD + +S Sbjct: 121 LLYQLFRELGHKSGLLSTVCNYVNDLAVEATHTTPDALALNALLAQMVDAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + A+ T I H+ E AK + F+ L N DD Sbjct: 181 SHSIDQHRISGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFFDNLSTDAFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ S A Y++ ADF+ R + E +++ + ++ + Sbjct: 241 NGLVMLQNSKAKK----YTYSLRGMADFKTRILEHGFEGMLLDMNDKEVNVSFIGKFNAS 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +++ + + ++ L + R+ + +T I + Y P Sbjct: 297 NLSAVFGAAVLLG-------QDELEVLRIISSLHSVSGRFETLHSPAGYTAIVD-YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSG- 408 ++ I ++QI G GR I V+G G +A + + S Sbjct: 349 DALVNVIGTINQI-LQGNGRLITVVG----CGGNRDKGKRPMMAREAVNGSWKAILTSDN 403 Query: 409 ----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +LA D + ++ + + GDVV+V K Sbjct: 404 PRFEEPQEILNDMLAGLDVVEKAKSLTIV-DRREAIKTACALAQAGDVVLVAGKG 457 >gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] Length = 490 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 488 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 77/454 (16%), Positives = 141/454 (31%), Gaps = 35/454 (7%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G + + GI+ DSR++ F A+KG DG F AV++GA ++ D +I Sbjct: 15 GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIA 72 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV VDD L A + ++A+TG+ GKT+ + A Sbjct: 73 DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132 Query: 140 IGSYNNHIGVPLTLARMPVD------------VDFGIFE--LGMSHLGEIRFLTHLVRPH 185 IG+ + G+ + S G + VR Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDGVRLA 192 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T + H+ + I+E AK +F L G + + D F ++ L Sbjct: 193 AGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGC 252 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + G+ + + E+ V+++ Q + Sbjct: 253 DVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLA 309 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + V A ++ K G+ + + + A +VL+ + P Sbjct: 310 MVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPEA----LENVLTSVRP 365 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALP 419 GR I V G G + ++ V ++ + + + Sbjct: 366 FTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDNPRSEVPAQIRSEIMA 421 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + S + GD +VV K Sbjct: 422 AATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] Length = 485 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 76/453 (16%), Positives = 157/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI DSR I F A +G + DGH++I AV+ GA ++V+ ++ ++ Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +DD+ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITRIGTI 134 Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + + +++ + E+ L R +V A Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDEFIVDNPEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + + +++++ + + ++ +G N L +GI + Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKIKFALLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C + Y P ++ I I Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + ++ V L+ + +K Sbjct: 361 VNRVITIFG----CGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYFFEPDREKAIKVAVNMAEKNDIILITG 449 >gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 487 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 89/472 (18%), Positives = 172/472 (36%), Gaps = 41/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L++ IQ + + V ++ DSR + P F AIKG DGHD+ A +G Sbjct: 1 MNLAELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 A +V + ++IPV V A+ +LA K +I ITG+ GKTTT Sbjct: 61 AVAIVSER-----LLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VPLTLAR---------MPVDVDFGIFE--LG 168 ++ L+ + + IG+ IG VP G+ + + Sbjct: 116 TTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEGVEDVIME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G +A T + HL E A AK +F L + + Sbjct: 176 VSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKVAV 235 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + ++G + AD Q + Q +++ + Q +++E+ I Sbjct: 236 LNADDEISHLFEMMTGARVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAVELTVQFI 295 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L+ GI+ + + A++ P +GR +R + Y Sbjct: 296 GRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPIDGYNIYV-----DYAH 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ + L + ++ + G + + ++ S Y + V + Sbjct: 351 TPDGIEQCLKALVDVPKEN------IIFLIGTGGNRDVTKRPMMGQLASTYAGTVVITTD 404 Query: 409 FHVLALKDALPRSI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 +++ I H + E + + S ++V++ K Sbjct: 405 DPRFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKG 456 >gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis biovar Abortus 2308] gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 6 str. 870] gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 4 str. 292] gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-acetylmuramyl-tripe [Brucella melitensis biovar Abortus 2308] gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] Length = 488 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +D ++ Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL+ + P GR I V G G + ++ V ++ + Sbjct: 356 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] Length = 498 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 149/453 (32%), Gaps = 36/453 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79 + I +DSR I F A+ G Y G F+ A++ A V+ + D Sbjct: 25 DPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDEDGFNFAKKIFT 84 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + IP+ +D L+K +T+IA+TG+ GKT+ + K Sbjct: 85 KIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANFTRQIWECLGKKAVN 144 Query: 140 IGSYNNHIGV----------PLTLARMPVDVD-FGIFE--LGMSHLGEIRFLTHLVRPHI 186 IG+ V P L ++ +++ G+ + S G + V Sbjct: 145 IGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSHGLDQKRLDGVYLTA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T HL + ++K +FE + + D L + L + Sbjct: 205 AAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPKGLYIYEVAKLRGQD 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 I + GK N D L+ + + + + V IGY A N+L +V Sbjct: 265 IITVGK-NNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQAMNILQAAALVIAC 323 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + LS GR + N +D ++ + L + PH Sbjct: 324 GEQPNDVFDTLSELRTVSGRMQLAAKRSNGA-SVFVDYAHTPDAVET-----ALKAMRPH 377 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421 GR + ++G G +L + V+++ +++ ++ Sbjct: 378 VMGRLLIIVGA----GGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSILLG 433 Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L +L GD +++ K Sbjct: 434 CPDAIEIGDRARAILTGVDALKPGDALLIAGKG 466 >gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi] Length = 397 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 95/407 (23%), Positives = 171/407 (42%), Gaps = 18/407 (4%) Query: 64 GAGLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 G + + + + + +V+ L LA ++ IAITGS G Sbjct: 3 GVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNG 62 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTTTKEML LS KTY G+ N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L Sbjct: 63 KTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLL 122 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + +++P I +IT I+ AH+ F ++ IA K++I + + D + +AK Sbjct: 123 SQILKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAK 182 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 +K +Y ++ + K E +G H N + Sbjct: 183 IANPNVKIVYFDFENLSI------KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIG 236 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + L + + K L + + ++++SYN N S A + Sbjct: 237 CINLALFLGMREKEIKEG----LIETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKN 292 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 ++ ++ + VLG E+GEL+ H DL + N ++L G L ++D+ Sbjct: 293 MILDLNIQNKK--FIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSE 350 Query: 419 PRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 +Y D F SL +V+K S R++N + Sbjct: 351 NLVEKCLYYFSEFDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 397 >gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis ATCC 23457] gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC 23457] Length = 488 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 155/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F A ++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +Y Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAP------AYIDYA 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 351 HKPEALENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] Length = 499 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 10 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 67 AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +Y Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAP------AY 357 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A +VL+ + P GR I V G G + ++ V + Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466 >gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] Length = 485 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 72/455 (15%), Positives = 151/455 (33%), Gaps = 46/455 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +GI DSR + F A++G + DGHD+I AV+ GA ++V+ + Sbjct: 16 DLNRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHK-- 73 Query: 82 SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + +D++ L +A + K II +TG+ GKT++ M+ + T Sbjct: 74 -VSYVLIDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITRIG 132 Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 Y V + + +++ + E+ L R ++ Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVD--VLDFD 190 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL +E AK ++F L+ N DD + + L + + Sbjct: 191 YALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKYGKRLYDEFIEDNPE 250 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I + + + + +++++ + K +V +G N L + I Sbjct: 251 IISYGIDGGDLEGE------YLDDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAIARK 304 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ +S GR + C + Y P ++ I I Sbjct: 305 MGISWEDILERVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNIR- 359 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 R I + G G + + V L+ + +K Sbjct: 360 -NGNRIITIFG----CGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKA 414 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + + + D++++ Sbjct: 415 GFTKTDDYLFEPDREKAIKLAINMAEKNDIILITG 449 >gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] Length = 479 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA LV+ + I V Sbjct: 14 VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKSIVID----KVI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V DV AL + + +IA+TG+ GK++ + S + K A IG+ Sbjct: 70 YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129 Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 VP + +++ +FE S G + ++ +I Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T+ + HL E AK ++F I + D Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIDFVKDYLHNHNIK 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + + + + + IG A N+L+ + + + Sbjct: 248 FITVGTKGDLEITRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D I +L +GR +R + ++ +K Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKVLTELKNI--------KL 357 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417 + + V G G L ++ + ++ + + Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + + ++L D+++V K Sbjct: 414 IEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448 >gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] Length = 486 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 148/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 +V G S V D AL L ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + Y + P +L V+ + +S Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL +E AK + F+ L N DD Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ ADF+ + + E + + + + H +G Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G L D + + LS GR + + L + +A Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL G+GR I V+G G L ++ V L+ + Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAVKLSDQVILTSDN 403 Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKG 457 >gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 10 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++GA ++ D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 67 AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 362 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 363 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466 >gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] Length = 495 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 155/479 (32%), Gaps = 46/479 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L G + + + G+++DSR + P F A+ G G +FI +A++ Sbjct: 1 MKSLAEL-----GLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRM 55 Query: 64 GAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 AG ++ + + + V D AL + A T+IA+TG+ GK Sbjct: 56 KAGAILTDAKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIF-----------E 166 T+ + +G+ PL + Sbjct: 116 TSVSTFCRQIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + V A + + HL E AK +F+ + + + Sbjct: 176 MEASSHGLDQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D A + + G+ +A +L + + + + QG++ + Sbjct: 236 NLDDPKGKEVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLE 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG A+N+L+ G+V AD D L GR + + +D ++ Sbjct: 296 LIGGFQAENVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGA-AVFVDYAH 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + L + PH GR I ++G G + L + + V + Sbjct: 355 TPDAVET-----ALRAMRPHVMGRIIVIVGA----GGDRDAGKRPLMGAAAAQHADIVIV 405 Query: 407 SG-----FHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A++ A S + L L GD +++ K Sbjct: 406 TDDNPRSEDPAAIRAAVMAGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKG 464 >gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 488 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 75/469 (15%), Positives = 142/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F A ++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 496 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 69/470 (14%), Positives = 136/470 (28%), Gaps = 54/470 (11%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I + GI+IDSR + P + F + G DGHD+ A ++GA +VV + Sbjct: 15 IRGDGETSCTGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGAAALVVER----WL 70 Query: 79 GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIA----------------ITGSVGKT 120 +++P V D A+ L S+ +I I G+ Sbjct: 71 DDVALPQLKVKDSRQAMAVLGGVFFGAPSSRLKVIGVTGTNGKTTTTYLIERILQDQGRE 130 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T + + + + ++ + E+ SH + Sbjct: 131 TGLIGTIQRRFAGQTYPMSGTTPESLELQQYLHDMAEGGGEYCVMEV-SSHALAQGRV-K 188 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLK 236 R AV T + HL ++E AK F + + + Sbjct: 189 GTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYAENPEERSYAVLNVDDPAS 248 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + ++G ++AD + + + V S ++ +G N Sbjct: 249 AYFAKQTAAEVITYGVEQDADVRASNISITARGTSFHVDTFRGSADISLRMVGKFNVYNA 308 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + ++ +L EGR + + + + Sbjct: 309 LAAISATLLEGIPLEQIKASLESVKGVEGRVEAVDEGQDFAVIVDYAHTPDG-------L 361 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411 +VL ++ +GR I V G G + ++ +V ++ Sbjct: 362 ENVLRTVNEFAKGRVICVFG----CGGDRDRKKRPIMGQIAAKYADYVLVTSDNPRTEDP 417 Query: 412 LALKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + DVV++ K Sbjct: 418 QAILRDIEQGLVEDGVDQARYELIVDRREAIGKAIEMASREDVVLIAGKG 467 >gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] Length = 484 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ I + I ++GI++DSR I P F A+KG DGH +I A++KG Sbjct: 1 MKLEKIIKGITVNEIIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV + ++ V+D + KLA SK ++ +TG+ GKTT Sbjct: 61 ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168 +L I + N P + D + Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK F+GL KT N D Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++++ +DF+ + + E + L ++EV I Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R + +A Sbjct: 291 GRFNASNLLAVYGAACLLGKKAEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G I V+G G L ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGHVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DV++V K Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457 >gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] Length = 500 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 94/485 (19%), Positives = 176/485 (36%), Gaps = 49/485 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M PL + L + GI + + I+ DSR + F A++G DGH+FI A Sbjct: 1 MVPLKRLLERLD-VSAVVGGIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVG 118 V G+ VV + + + V D A+ ++A A + +II +TG+ G Sbjct: 60 VSLGSKAVVCEE--LPETPAERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDF 162 KTTT ++ ++ IG+ G L Sbjct: 118 KTTTARLMAGMMNDCGIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSIMAERGCRA 177 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+ SH ++ +V AV T + HL +E ASAK +F + G Sbjct: 178 VVMEV-SSHALVLQRTFGIV-FSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSPEGF 235 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQ 277 + +N DD + + + G S A + + + + + + + + Sbjct: 236 VVVNADDPRAGFMAENRGKSRLY-CCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDAD 294 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G+ +V+ G N+L L + + +++LS P EGR + R A Sbjct: 295 GRGYDVLFRLTGLFNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGDF 354 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F + Y P +++ I L+++ P EG I V G G + ++ Sbjct: 355 FAVVD---YAHTPDALEKVIGTLNELKPE-EGELIVVFG----CGGNRDHEKRSVMGRIA 406 Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + ++ + + + + ++ + + L +GD+++ Sbjct: 407 SRGADRLIITSDNPRDENPESILDDIAEGIVSPGYMRFC-DRAEAIHCGVNLLKEGDILL 465 Query: 449 V--KS 451 V K Sbjct: 466 VAGKG 470 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 133/453 (29%), Gaps = 36/453 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +N +S DSR I F AI G DGH FI A+ +GA +VV++ S +I Sbjct: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 Query: 84 ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 P+ VD+ L+ A + I+A+TG+ GK++ + + Sbjct: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 Query: 140 I--------GSYNNHIGVPLTLA---RMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHI 186 I + +N + P + + G+ + S G + ++ Sbjct: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ + +AK +FE L + + Y D + K Sbjct: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + S G + ++Q + L + Sbjct: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNALVAAGLC 322 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A + L R+ I Y S++ + I Sbjct: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN---IRTI 379 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421 GR I V G G + ++L ++ ++ + Sbjct: 380 TSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 I + L DV+VV K Sbjct: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 >gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii str. Madrid E] gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii] gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE (murE) [Rickettsia prowazekii] gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii Rp22] Length = 480 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 87/457 (19%), Positives = 155/457 (33%), Gaps = 48/457 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G+S +S+++ E FFAIKG + DG+DFI A+ GA LV+ +I Sbjct: 11 NHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAID---- 66 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V V+DV AL + + +I++TG+ GK++ + A S +KK A IG+ Sbjct: 67 KVIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTI 126 Query: 144 NNH--------IGVPLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPH 185 VP + S G + + + Sbjct: 127 GLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVN 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I T+ + HL E AK ++F I + D Sbjct: 187 IVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNV 246 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + GK D Q+ K ++ + IG A N+L+ + Sbjct: 247 KFITVGK--KGDLQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYY 304 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 D I+AL+ P +GR + T I Y+ P S++ A+ L I Sbjct: 305 TGFKFDEIIEALAKVKPIKGRM-------ERIDGTNIFVDYSHTPDSLEKALIELKNIKL 357 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 HG L + G L ++ +V ++ + + Sbjct: 358 HGSK-----LSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEIIR 412 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + ++L D++++ K Sbjct: 413 GIGTATYTEIA-SRAEAIKYGINNLKQDDILLIAGKG 448 >gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] Length = 490 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 3 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 62 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 120 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 180 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 239 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 240 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 298 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +D ++ Sbjct: 299 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL+ + P GR I V G G + ++ V ++ + Sbjct: 358 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. 2_1_7] Length = 486 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 148/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 +V G S V D AL L ++ +TG+ GKTT Sbjct: 63 AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + Y + P +L V+ + +S Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL +E AK + F+ L N DD Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ ADF+ + + E + + + + H +G Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G L D + + LS GR + + L + +A Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL G+GR I V+G G L ++ V L+ + Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAVKLSDQVILTSDN 403 Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457 >gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia africae ESF-5] gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia africae ESF-5] Length = 479 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FFAIKG + DG+DFI A+ KGA LV+ + I V Sbjct: 14 VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V DV AL + + +IA+TG+ GK++ + S + K A IG+ Sbjct: 70 YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129 Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 VP + +++ +FE S G + ++ +I Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T+ + HL E AK ++F I + D Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 247 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + + + + + IG A N+L+ + + + Sbjct: 248 FITVGTKGDLEIIRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D I +L +GR +R + ++ +K Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417 + + V G G L ++ + ++ + + Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + + ++L D+++V K Sbjct: 414 IGKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448 >gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] Length = 509 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 84/498 (16%), Positives = 152/498 (30%), Gaps = 67/498 (13%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LL+ I I + V+ + +SR P F AI+G DGH++I AV+ Sbjct: 1 MNLSILLKGINILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVR 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120 GA ++V ++ I V V++ L LA +A+ G+ GKT Sbjct: 61 CGAKVIVCEKEV---TMPPEITVVRVENGRRTLGLLARNFYADPSRCLVAVAVMGTNGKT 117 Query: 121 TTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDV---DFGIFEL--------- 167 T +L + + + G+ + + I E+ Sbjct: 118 TVTYILESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLV 177 Query: 168 -GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220 +S + + T + HL +E AK F + Sbjct: 178 AEVSSHAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHR 237 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + +N DD + + L ++ I +FG + AD + + + E+ + S Sbjct: 238 YAMAVNADDPWGKRLIRET--GEISRPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMS 295 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +V IG N+L + L ++ + + + GR Sbjct: 296 FDVDTALIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGR---LEKVSGSTQPD 352 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + + + + A VL +SP GR I V G G L ++ Sbjct: 353 VFVDYAHTDDA----LRRVLQSLSPFKRGRIITVFG----CGGDRDRGKRPLMGKVATNY 404 Query: 401 ISHVWL------------------SGFHVLAL----KDALPRSIHVH---YSETMDGLFL 435 L G + ++ + L R + Sbjct: 405 SDLTILTSDNPRSEDPLSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIG 464 Query: 436 FIQSSLVDGDVVVV--KS 451 S D+V++ K Sbjct: 465 AAIRSARPSDIVLIAGKG 482 >gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] Length = 485 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 74/455 (16%), Positives = 152/455 (33%), Gaps = 46/455 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +GI DSR + F A++G + DGHD+I AV+ GA ++V+ + Sbjct: 16 DLNRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHK-- 73 Query: 82 SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 + +D++ L +A + K II +TG+ GKT++ M+ + T Sbjct: 74 -VSYVLIDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITRIG 132 Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 Y V + + +++ + E+ L R ++ Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVD--VLDFD 190 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL +E AK ++F L+ N DD + + L + + Sbjct: 191 YALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKYGKRLYDEFIEDNPE 250 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I + + + + +++++ +GK +V +G N L + I Sbjct: 251 IISYGIDGGDLEGE------YLDDGYIDIKFKGKVEKVKFALLGDFNLYNTLGAVAIAIK 304 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + +K +S GR + C + Y P ++ I I Sbjct: 305 MGISWEDILKRVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNIR- 359 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 R I + G G + + V L+ + +K Sbjct: 360 -NGNRIITIFG----CGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKI 414 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + + + D++++ Sbjct: 415 GFTKNDDYFFEPDREKAIKLAINMAEKNDIILITG 449 >gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] Length = 485 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 79/469 (16%), Positives = 155/469 (33%), Gaps = 44/469 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L+ ++ S+ + IS DSR + F I+G DGH++I A+QKGA ++ Sbjct: 6 ILKDVEILSVNGQVDIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAIL 65 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 ++ + I V++V ++ + K +I +TG+ GKT+T + Sbjct: 66 IDKKISYK---KGITYIRVNNVKESMAIIGKNFFQNPCQKINLIGVTGTNGKTSTVSFIK 122 Query: 128 IALSSIKKTYACIGSYNNH--------IGVP-----LTLARMPVDVDFGIFELGMSHLGE 174 L K + P + + + +S Sbjct: 123 QILGYDCKVGSIGTIEIYDGKKTITSINTTPESLDIQKNLNEMIKNNCKYCVMEVSSHAL 182 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + AV T + HL +E +AK ++F + N DD E Sbjct: 183 VLNRIDNIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLFY--KTKSINIFNIDDKVGEE 240 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 KS Y++G K ADF+ K +++ ++ + + +V +G Sbjct: 241 FFNKSLNR-DIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVY 299 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + +L + IK + GR + N + +A Sbjct: 300 NTLAAITTCILLGLSREDVIKRVQNLKSVSGRLDKVENDKNVNIIVDYAHTPDA------ 353 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SG 408 +++L + R I V G G + ++ N + Sbjct: 354 -LLNILKSARLFTKNRIILVFG----CGGNRDKAKRPIMGKIAQQNADISIITSDNPRFE 408 Query: 409 FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++D L + + + GD++++ K Sbjct: 409 KEMDIIEDILCGIDKTLDNYFVVQDREDSIKKAIELYEVGDLIIIAGKG 457 >gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] Length = 531 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 82/488 (16%), Positives = 152/488 (31%), Gaps = 56/488 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 LL ++ I Q V G++ S +A E F A+KG DGH +I A+++GA Sbjct: 11 NLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERGA 70 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +VV+ + + G + V D AL +A A T++ ITG+ GKTTT Sbjct: 71 AVVVLEDAVEPTPG---VVCVQVPDTRLALAHMAAAFYDHPSCNLTVVGITGTNGKTTTS 127 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----DVDFGIFELGM---------- 169 +L + IG+ N G + + + D+ + E+ Sbjct: 128 YLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDCAIMEV 187 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-YD 228 S VR + T ++ HL +E + K+ +F L Sbjct: 188 SSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDGPQLAV 247 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + K + ++G + AD + + + +++V + Sbjct: 248 INRDDPWGQKLLPQTSPPVLTYGFAAGADIRPEDITLTHQGIQARLHTPYGRLDIVSPLM 307 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N+L G L + + L+ +GR + + +A Sbjct: 308 GRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQPLVLVDYAHTPDA 367 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VL+ + R I V G G L + V ++ Sbjct: 368 -------LEKVLAALKALDFDRIITVFG----CGGDRDRRKRPLMGQVVARGSDVVIITS 416 Query: 409 FHVL-----------------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + + +A + G+ Sbjct: 417 DNPRTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNPGE 476 Query: 446 VVVV--KS 451 V+++ K Sbjct: 477 VILLAGKG 484 >gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] Length = 499 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 12 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 70 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 71 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 128 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 129 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 188 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 189 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 248 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 249 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 307 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +D ++ Sbjct: 308 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 366 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL+ + P GR I V G G + ++ V ++ + Sbjct: 367 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466 >gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] Length = 488 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 81/466 (17%), Positives = 150/466 (32%), Gaps = 46/466 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I I + +++DSR+ F AIKG DG +I A+Q GA V+ D Sbjct: 10 IHIAENVNLTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQH 69 Query: 79 GSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS 132 + +P+ + L+ LA + T++ +TG+ GKTTT ++L Sbjct: 70 LQVRYEQQVPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKI 129 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIR 176 + T A +G+ N G+ + + + +S G ++ Sbjct: 130 LGHTSAVMGTIGN--GLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQ 187 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 V AV T ++ HL +E A+AK +F L+ I D L Sbjct: 188 HRVEAVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHHIIDADDPVGAAWLA 247 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A+ + F + + + + ++ + + E+ IG N+ Sbjct: 248 EMPEAVAVSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNL 307 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ + + L D+ I + GR + + +A Sbjct: 308 LLIMATLLALGYDLAELIGSAHKLTGVCGRMEMLHAPHKPTVIVDYAHTPDA-------L 360 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410 L H G+ + G G S L ++ V + + Sbjct: 361 EKALQAARLHCHGKLWCIFG----CGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDH 416 Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + S V+ DV+++ K Sbjct: 417 TQIMADILKGFIHPQAVQVIHQREEAIATAIQSAVENDVILIAGKG 462 >gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] Length = 485 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 78/453 (17%), Positives = 156/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI DSR I F A +G + DGH++I AV+ GA ++V+ ++ ++ Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +DD+ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITRIGTI 134 Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + + +++ + E+ L R +V A Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDEFIVDNSEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S + + + +++++ + + +V +G N L +GI + Sbjct: 253 SYGIDSGDLEG------DYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C N Y P ++ I I Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQNYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + + + L+ + +K Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYFFEPDREKAIKLAINMAEKNDIILITG 449 >gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 82/469 (17%), Positives = 155/469 (33%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F A ++G Sbjct: 12 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRG 70 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 71 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 128 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 129 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 188 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 189 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 248 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ N L++ + + +EV++ + E+ G Sbjct: 249 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 307 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + A++AL++ GR + +D ++ Sbjct: 308 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 366 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +VL+ + P GR I V G G + ++ V ++ + Sbjct: 367 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466 >gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] Length = 494 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 160/460 (34%), Gaps = 34/460 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + V G+S+DSR + P F A+ G G F+ A+++GAG V+ + Sbjct: 12 GLTARPGSDVAVTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGE 71 Query: 76 A----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 ++ ++P+ V+D AL+ A AT++A+TG+ GKT+ + Sbjct: 72 DTARQALAGGTVPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQ 131 Query: 132 SIKKTYACIGSY----------NNHIGVPLTLARMPVDVDFGIF---ELGMSHLGEIRFL 178 ++ A IG+ ++ P+TL R+ ++ + S G + Sbjct: 132 ALGLDAANIGTTGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASSHGLAQRR 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL + +E AKA +F + + D + + Sbjct: 192 LDGVMLKAAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVLVE 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + G+ + QL+ + + + QG V IG A N+L Sbjct: 252 RARARGQKLIRVGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMNVLT 311 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V A+ + L GR + N T+ + + A + Sbjct: 312 AAGLVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGA--TVFVDYAHTPDA----VET 365 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 L + PH GR IA++G G L + + V ++ Sbjct: 366 ALRALRPHVLGRIIAIVGA----GGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPAL 421 Query: 414 LKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A L +L GD +++ Sbjct: 422 IRAAVMAGAGPEATEVGDRAEAILRGVDALGPGDALLIMG 461 >gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] Length = 482 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 88/485 (18%), Positives = 153/485 (31%), Gaps = 70/485 (14%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57 + T +L P+ V G+++DSR + P F A+ G DGHDF+ Sbjct: 1 MPTLKELFALFG----KEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFV 56 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115 A+ +GA VV + +L +P V D AL LA ++ +TG Sbjct: 57 PEALARGAVAVVGERPL-----ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMP 157 S GK+TT +L L + A + + +G Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + E+ SH ++ + L + HL E AKA + E Sbjct: 172 RGLKSAVLEV-SSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVERS 230 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + + SFG+ + ++ E + Sbjct: 231 DLAVLARSLPHFPRLAQ----------RPHLSFGE--GGEVYAEGLRETPEGLAFRLHTP 278 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 S E +G + +N L L ++ ++ L+ F GR L Sbjct: 279 WGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGR---MEVVLKAP 335 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F +ID ++ L + P GR + V+G GE +D+ V + Sbjct: 336 FRVVIDFAHTGKSLEA-----ALKTLRPTTPGRLLLVVGAA---GERDPQRRVDIGRVAA 387 Query: 398 LYNISHVWL----SGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVV 448 + G + A+ +A+ ++ + L GD V+ Sbjct: 388 RLADKTFFTEEDHRGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVL 447 Query: 449 V--KS 451 + K Sbjct: 448 LAGKG 452 >gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] Length = 494 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 160/477 (33%), Gaps = 46/477 (9%) Query: 5 WTFHDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++L +++ + Q V G++ DSR + P FFA G DG +F A+ Sbjct: 1 MNLGEILSSVKLPRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120 +GA V+ + + L+ V+ AL A R + ITG+ GKT Sbjct: 61 RGAVAVISES---LAPPDLAARWIQVEHGRHALALAARTFFGRPDERLGLTGITGTNGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH---------IGVPLTLARMPVDVDFGIFE----- 166 TT + L + A IG+ H P +L + + D Sbjct: 118 TTAYLTDSVLRAAGGVTAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVT 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S H + H AV T + HL +E +AK +FEG F Sbjct: 178 MEVSSHALALGRVHGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAV 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + HA + +G + AD + R + ++Q + + + Sbjct: 238 LNTDDEYSRRLRLHARTERLW--YGMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESP 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + + ++ GR + F ++ + Sbjct: 296 LIGKINVYNILAACATGFSYGLAPEVVARGIASLKAVPGR---FERVDEGQPFVVVVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + A +V++ R I + G G L + V L Sbjct: 353 HTDDA----LRNVIAVARGLNPRRVITLFG----CGGDRDRAKRPLMGKAAAEASDFVVL 404 Query: 407 SGFHVLA------LKDAL---PRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + DAL R+ H E + +GD+V++ K Sbjct: 405 TSDNPRSEDPLTIMNDALVGIRRTDVAHVVEPDREAAIRRAIKEAREGDIVILAGKG 461 >gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] Length = 485 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 77/453 (16%), Positives = 155/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI DSR I F A +G + DGH++I AV+ GA ++V+ ++ ++ Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 +DD+ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITRIGTI 134 Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + + +++ + E+ L R +V A Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD + + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDEFIVDNSEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + +++++ + + +V +G N L +GI + Sbjct: 253 SYGIDGGDLEG------DYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C N Y P ++ I I Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQNYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + + + L+ + +K Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYFFEPDREKAIKLAINMAEKNDIILITG 449 >gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] Length = 482 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 92/485 (18%), Positives = 157/485 (32%), Gaps = 70/485 (14%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57 + T +L P+ V G+++DSR + P F A+ G DGHDF+ Sbjct: 1 MPTLKELFALFG----KEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFV 56 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115 A+ +GA VV + +L +P V D AL LA ++ +TG Sbjct: 57 PEALARGAVAVVGEKPL-----ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMP 157 S GK+TT +L L + A + + +G Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + E+ SH ++ + L + HL E AKA + Sbjct: 172 RGLKSAVLEV-SSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLV--- 227 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 E++ L F L K SFG+ + ++ E + Sbjct: 228 ERSDLAVLARSLPHFPRLAQK-------PHLSFGE--GGEVYAEGLRETPEGLAFRLHTP 278 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 S E +G + +N L L ++ ++ L+ F GR L Sbjct: 279 WGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGR---MEVVLKAP 335 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F +ID ++ L + P GR + V+G GE +D+ V + Sbjct: 336 FRVVIDFAHTGKSLEA-----ALKTLRPTTPGRLLLVVGAA---GERDPQRRVDIGRVAA 387 Query: 398 LYNISHVWL----SGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVV 448 + G + A+ +A+ ++ + L GD V+ Sbjct: 388 RLADKTFFTEEDHRGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVL 447 Query: 449 V--KS 451 + K Sbjct: 448 LAGKG 452 >gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] Length = 476 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 79/473 (16%), Positives = 158/473 (33%), Gaps = 52/473 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DL++ I+ + V ++ +S + F A+KG +DGH +I A++K Sbjct: 1 MIKLSDLVRKIEYLDVKHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYIDEAIKK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA VV D+ I V D L +++ K ++I +TG+ GKTT Sbjct: 61 GAKAVVHTEDVEYRE---DITYIRVFDPRQTLAEISNLITDFPSEKLSVIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------L 167 T +++ + + A IG+ ++G + + ++ + + L Sbjct: 118 TSKLIAYLIEKVFGPCANIGTDGANVGGEIIETSNTTPDITEINRILEKCVEKGIKYVTL 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G ++ VR + + ++ HL ++ AK +FE E T + Sbjct: 178 EASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMDAYFKAKMILFENSEITIANIDDP 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 L T SFGK + A+ + + + + ++ Sbjct: 238 WGKKAVEL--------FPTTLSFGKDEKANIRATDISKTDKGIS----FKIDGVDFFIRT 285 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I N L + + L A + + ++ F R + + Sbjct: 286 IADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFEYIENDKGLNIIVD----FA 341 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P + + L + ++IAV G G+ + F + + +S Y I + + Sbjct: 342 HTPRAFEEIFKSL-----PRDKKKIAVFGI---QGDRNPEFRNLIGKTVSDYGIYAIVTT 393 Query: 408 GFHVLALKDALPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + I + GD V+ Sbjct: 394 DDPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMG 446 >gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] Length = 476 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 69/463 (14%), Positives = 149/463 (32%), Gaps = 45/463 (9%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 S+ + I DSR + + F AI G +GHDFI A+ +GA +++ + Sbjct: 2 ESVVGNTAVAIKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIICEK--LP 59 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 + + V + AL +A K ++ +TG+ GKTT +L + Sbjct: 60 NDIVNGVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAG 119 Query: 135 KTYACIGSYNNHIGVPLT------------LARMPVDVDFGI--FELGMSHLGEIRFLTH 180 + + +G + + G+ + +S G + T Sbjct: 120 FKVGLLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTT 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + + T ++ HL S E K F+ L + N DD E++ + Sbjct: 180 GLVFAGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDELPASAFALTNVDDKNGEVMLQNTK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A Y++G AD++ + + +++ Q ++ + N L Sbjct: 240 A----KQYTYGLKNYADYKAQILENQFTGLLLKINDQEVWSRLI-------GSFNAYNIL 288 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + ++ L R++ ++ Y P ++K + + Sbjct: 289 AIYAAAELLGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTI 348 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416 + I E V G+ ++ + + S + ++ S A+ + Sbjct: 349 NAIRTKNEELITVV----GCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIE 404 Query: 417 ALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + D++++ K Sbjct: 405 EIEKGVEPQNFNKTVSISNRKQAIKTACQMAQANDIILIAGKG 447 >gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] Length = 494 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 73/459 (15%), Positives = 139/459 (30%), Gaps = 34/459 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73 G + + GI++DSR + F A+ G G F A+ GA ++ + Sbjct: 13 GLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGA 72 Query: 74 --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + ++ + V+D AL + T++A+TG+ GKT+ + Sbjct: 73 QIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVRQIWI 132 Query: 132 SIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 + + + S G + Sbjct: 133 ELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLDQRR 192 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL E +AKA +F + + + D Sbjct: 193 LDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGPEMRA 252 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A + + S G+ D L + + M K + + IG A+N+L+ Sbjct: 253 IAAARGQEVISVGR-GAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAENILL 311 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D + L GR + N +D ++ + + Sbjct: 312 ACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGA-TVFVDYAHTPDAVAT----- 365 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 + + PH GR +A++G G + L + N V ++ Sbjct: 366 AIKALRPHVLGRLVAIVGA----GGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAV 421 Query: 414 LKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ L +L GD +++ Sbjct: 422 IRAAVKGGAPGALEVGDRAEAILRGVDALGAGDALLICG 460 >gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 497 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 91/508 (17%), Positives = 174/508 (34%), Gaps = 66/508 (12%) Query: 5 WTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L++ + + + VN + +SR + P F ++G +D H Sbjct: 1 MKLSHLIELLGNNLVEVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHLLAPEL 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 ++GA ++ + L IP+ V A L + K T I +TG+ G Sbjct: 61 QERGAAALIAEKKIDV---DLDIPIIYVKSSRLAEAHLYMEINDHPYKKLTTIGVTGTNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVD 161 KTT ++ L + ++ A +G+ N IG + +++ Sbjct: 118 KTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATLAKYMKMAVEKNLE 177 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+ S G +R +AV+T + HL + E+ K IF L+ G Sbjct: 178 YFVMEV--SSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIFNLLKPVG 235 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KS 280 +N D+ +K L I ++G +DF++ + + V+ Sbjct: 236 KAVVNSDNVNIGDIK-----LPRDKIITYGFGNESDFRMENLEISRTGMYFTVETPFGSK 290 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +V +G H A N+ T+ + L D + ++A+S F GR + A GF Sbjct: 291 HKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEATKYGFDV 350 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 L+D ++ + +L EGR I V G G + L ++ Sbjct: 351 LVDFAHTPDALE-----KLLKTAKKLSEGRIIIVFGA----GGDADKGKRPLMGEIASRF 401 Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V L+ ++ + ++ + D V++ Sbjct: 402 ADVVILTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTLANRQDTVLIAG 461 Query: 452 SNS-----------CGFY--RLINLLLE 466 F R++ +L+ Sbjct: 462 -RGHEDYQAFADYVVAFNDKRVVKEILD 488 >gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] Length = 501 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 87/483 (18%), Positives = 157/483 (32%), Gaps = 49/483 (10%) Query: 5 WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL+ +I+ I V I DSR + P F AI+G + DGH +I AV+ Sbjct: 1 MRLKDLINSIELVEIAGELHEDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQYINQAVE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120 A +V + S V D AL K+A + +I +TG+ GKT Sbjct: 61 ADAMAIVCEE--IPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKVIGVTGTNGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGI 164 TT M+ L + + IG+ IG L + + Sbjct: 119 TTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDRTTPDALELHQLFHKMLEAGCRAVV 178 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ S T +R IAV T + HL + A AK +F+ L ++ Sbjct: 179 MEV--SSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDNLSESAFAV 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +N DD + E + A ++ ++ D + + + + Sbjct: 237 INADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGTSAIIADDKN 296 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 SM +G N + D I+ L P GR ++ ++ Sbjct: 297 SMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQVWSKDHRCAI 356 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 Y+ P +++ A+ + + P G L ++ Sbjct: 357 VD----YSHTPDALENALQTICLVKPENGRIITLF-----GCGGDRDKEKRPLMGKIAED 407 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 N + ++ + ++ + + + + + + L GDV ++ Sbjct: 408 NSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVALIA 467 Query: 450 -KS 451 K Sbjct: 468 GKG 470 >gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t. morphotype B'] Length = 481 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 164/473 (34%), Gaps = 49/473 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ ++ ++ I DSR F AIKG DGH ++ +A++ GA Sbjct: 3 LKKILENVEYELQQGDINRDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGAR 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++VV+ + + +I V V D + +A ++ +TG+ GKT+T Sbjct: 63 VIVVSDAVFVA---ANIAVVRVKDTRAVMAAIAGNFYGHPSKELALVGVTGTNGKTSTTF 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELGMS 170 +L L + +K IG+ N IG + R D + + +S Sbjct: 120 LLAEILEAYRKKIGVIGTIENRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + I V T + HL ++ A+AKA++F +N D Sbjct: 180 SHALVLNRVDGCDFDIGVFTNLTQDHLDFHETMDNYAAAKAKLF---SMCKISIINVDSP 236 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + +++ A I ++G A F + + ++ ++ GK +++V G Sbjct: 237 YSKVMLDSCKAETI----TYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVPIPGE 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N + + L +D AL GR + ++ + + Sbjct: 293 FTVYNTMCAIICAYKLGVPLDFIAXALKNVKGVPGRVQSFQSTKGYSVLVDYAHTPDG-- 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407 +VL+ I +G + V G G + + ++ + V+++ Sbjct: 351 -----LENVLTAIKQFAKGDIVTVFG----CGGDRDNKKRPIMGEIASKYSTKVYITSDN 401 Query: 408 ------GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + I + S DV+++ K Sbjct: 402 PRSEEPDEIIRQIEVGAKKHITPYEIESDRKTAIIKALSFAKKDDVILIAGKG 454 >gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] Length = 481 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 157/476 (32%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ ++ S+ + + G+ IDSR + + F AIKG DGH FI AV +G Sbjct: 1 MTLSSILKNVKPLSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A V+ T + + + V+ A+ +A K ++ +TG+ GKTT Sbjct: 61 ATAVLCET--MPTQLPQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + +Y +P V+ + Sbjct: 119 ATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + V + + HL E +AK F+ L K N D Sbjct: 179 CSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++ ADF+ + + E ++E+ ++ + Sbjct: 239 DKNGMVMVQNTRAAVK----TYSTRSMADFKAKILECHFEGMYLEINGAEVGVQFIGKFN 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ + + L V R + + +T I + Y Sbjct: 295 VSNLLAVYATAVMLGKRPEDI-------LLVMSTLHSVNGRLQPLSSPEGYTAIVD-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ ++ + ++ +G+G+ I V G G L V ++ V ++ Sbjct: 347 TPDALENVLNAIHEV-LNGKGKVITVCGA----GGNRDKGKRPLMAVEAVKQSDRVIITS 401 Query: 409 -----FHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + V GDVV+V K Sbjct: 402 DNPRFEDPQAIINDMLAGLNAQQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKG 457 >gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] Length = 483 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 150/477 (31%), Gaps = 50/477 (10%) Query: 5 WTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 ++LL+ IG + G++IDSR I F A+KG DGH FI A++ Sbjct: 1 MKLNELLKNITPIKIIGND-DVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIEL 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA V+ + + I V+ A+ K+A K ++ +TG+ GKTT Sbjct: 60 GAISVLCED--LPKVLQEGITYVQVESTEDAVGKVATLFYGDPSHKLKLVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167 +L + + +Y + + VP V+ + Sbjct: 118 IATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + ++ + T + HL E +AK F+ L K N Sbjct: 178 ECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDSLPKDAFAITNA 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A T+ ++ ADF+ R + E ++E+ + ++ + Sbjct: 238 DDKNGMIMVQNTKA----TVKTYSIRTLADFRARILECHFEGMYLEIDGREVGVQFIGKF 293 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 ++ + + DV + L + + + ++ Sbjct: 294 NVSNLLAVYGAAIMLGK-KPEDVLLVLSTLHSVNGRLEPIHSPEGFTAIVDYAHTPDALA 352 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++ + G+G I V G G L ++ V ++ Sbjct: 353 NVLNAIHEVLD--------GKGHVITVCGA----GGNRDKGKRPLMAQEAVRQSDKVIIT 400 Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L V GDVV+V K Sbjct: 401 SDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457 >gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] Length = 479 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 155/475 (32%), Gaps = 52/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I+ G + +S DSR + P F IKG DGHDF A+ KG Sbjct: 1 MKLSELLKDIEYT--GTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFAQAALAKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ D+ + V D A K+ K ++ +TG+ GKTT Sbjct: 59 VPCILCERDLGLNN------QLLVQDTHFAFAKMCANFYGNPAKKLKLVGVTGTNGKTTV 112 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE---LG 168 ++ L+ + IG+ N IG ++ D+ E + Sbjct: 113 TSIIKRVLAGLGCKVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKILSDMVEAGCEYVIIE 172 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + +A T + HL +E+ AKA++F + D Sbjct: 173 VSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLFH---MCDKGVICID 229 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 DS+ L ++H + +A R + E+ + Sbjct: 230 DSYGRRLALEAHCS---LRTFSAEDASASCFARNIEMDITGVRFEMVTGAVISRMQFGTP 286 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G +N L + L +D+ + ++ R FT++ + Y Sbjct: 287 GLFSVRNALCAALVCLDLGISLDSVVGGINAC---GHIKGRSEIIPTGRDFTVLCD-YAH 342 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P + +S +++ G+GR +AV G G + + N + ++ Sbjct: 343 TPDGLVNILSSINEY--KGKGRAVAVFG----CGGDRDRKKRPIMGEVVARNADLLIVTS 396 Query: 409 -----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + P + GD++++ K Sbjct: 397 DNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGDIILLAGKG 451 >gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16] gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16] Length = 489 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 150/477 (31%), Gaps = 46/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + G + + + +DSR + P FF +KG DGHDF AV++G Sbjct: 1 MKLQTLLSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + ++ + + D A+ LA A + + +I +TG+ GKTTT Sbjct: 61 AVAIVAERPLSVNVPVVVV-----PDSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ K IG+ IG + + E + Sbjct: 116 THIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S + H +AV T + HL +EE A G Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + I ++G + +D + + ++ +M + Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + T +AL+ P GR + FT+I + Sbjct: 296 LVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGR---FETVDEGQNFTVIVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + + L + + V+G G L ++ Sbjct: 353 HTPDS----VENALKTVRQFAKRNVYVVIG----CGGDRDRTKRPLMAQAAVRYADVAVF 404 Query: 407 SGFHV---------LALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + + + + +GDVV++ K Sbjct: 405 TSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461 >gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii 37] gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas ingrahamii 37] Length = 509 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 146/461 (31%), Gaps = 40/461 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-- 79 P V+G+++DSR I F A++G +DG FI +++ GA V+ T + G Sbjct: 22 DPSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKMGACAVLSETKNRSEHGQV 81 Query: 80 --SLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSI-K 134 +PVF V L+ LA + K +IA+TG+ GKTT +L + + K Sbjct: 82 TIKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTNGKTTIASLLADSFMLLGK 141 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHL 181 ++ N G + +D E + +S G + Sbjct: 142 QSAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCYQQQRAEYTIMEVSSHGLDQGRVSA 201 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V A+ T + HL +E AK +FE I D + L A Sbjct: 202 VPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQRIINADDPIGAQWLTDFPDA 261 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + K + ++ ++ V G N+ L Sbjct: 262 ISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFHSSWGKGVVSAPFYGDFNVSNLAAVLT 321 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + ++ GR ++Y A F + Y P +++ + L Sbjct: 322 QLLVENVSIEHVQTIFPKLSTVPGRMEQYYFAEKNITFVVD---YAHTPDALEKVLLALQ 378 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 GR I V G G + ++ V L + Sbjct: 379 --KHKSSGRLICVFG----CGGDRDTGKRPQMANIAESYAQKVVLVDDNPRTENAQSIIE 432 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + R V F+ +S D+V++ K Sbjct: 433 DILQGFARPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAGKG 473 >gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] Length = 471 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 69/454 (15%), Positives = 140/454 (30%), Gaps = 45/454 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F AI G DG +I A+ +G +V D VA S+ +PV Sbjct: 2 TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + ++ L+ LA + ++ +TG+ GKTTT ++L ++ + + Sbjct: 62 YLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + A + ++ +N DD ++ ++ Sbjct: 182 NLSRDHLDYHGNM-ASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMEGH 240 Query: 251 GKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + + + + + ++ +G N+L+ L + L Sbjct: 241 LPAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSLGY 300 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + A P GR + + + +A L+ H + Sbjct: 301 PLAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCK 353 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419 G+ V G G L ++ V ++ + + L Sbjct: 354 GQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLL 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H + DVV++ K Sbjct: 410 DAGHALAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443 >gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] Length = 508 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 69/456 (15%), Positives = 144/456 (31%), Gaps = 32/456 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + + DSR I P + F A G DG+ FI A+ GA V+ + IP Sbjct: 21 VEIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDPRNFVWKSEWRIP 80 Query: 85 VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY----- 137 VDD+ +A ++ ITG+ GKT+ A+ ++ Sbjct: 81 ALAVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTAVLGT 140 Query: 138 ---ACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAV 188 I + + + E + +S G + T +A+ Sbjct: 141 LGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAFSVAL 200 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T ++ HL ++ A+AK+ +F + D EL + Y Sbjct: 201 LTNLSRDHLDYHQDMDAYAAAKSSLFFWPGLKYAVVNMDDVLGVELSRQLVTKPIKMMGY 260 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 F +N D + K S + ++ H +++++ A Sbjct: 261 GFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNLLAVVAA 320 Query: 309 DVDTAIK---ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + I+ A+ + R T+I + Y P +++ + L ++ Sbjct: 321 LLASGIRLPDAVGSLQSVQSIPGRMEKYYGINQSTIIVD-YAHTPDALEKVLCTLRELLR 379 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419 + G + ++ V + + + ++D Sbjct: 380 IEGRNARLFC--VVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRIIEDIAA 437 Query: 420 RSIHVHYSETMDGLFL--FIQSSLVDGDVVVV--KS 451 ++ +Y +D ++ D+V++ K Sbjct: 438 GAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKG 473 >gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromobacterium violaceum ATCC 12472] gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Chromobacterium violaceum ATCC 12472] Length = 493 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 156/454 (34%), Gaps = 39/454 (8%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSI 83 + + DSR + P + F A +G + DG DFI A++KGA V+ + D A Sbjct: 21 LPIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAVLWDEADGFAWKAEWQA 80 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK------ 135 P V ++ +A T++ ITG+ GKT+ L A S + + Sbjct: 81 PNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTNGKTSISHWLAQAFSLLGQKAALIG 140 Query: 136 ---TYACIGSYNNHIGVPLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPHIA 187 P + ++ + + +S G +F + V A Sbjct: 141 TVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQFRVNGVEFATA 200 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL +E +K ++F + D F A + Sbjct: 201 VFTNLTRDHLDYHGSMEAYGESKKKLFFWEG--LKHAVINADDAFGRQLAAGIDPKQTRV 258 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++G + D + E + V +++V +G A N+L L + + Sbjct: 259 VTYGL-EQGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAANLLACLATLCVNG 317 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A +V + R + ++ + Y P +++ A++ LS+I P Sbjct: 318 VSLQD---AAAVMARIQPARGRMQSVGGAHEPLVVID-YAHTPDALEKALATLSEIRP-A 372 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP-- 419 GR V G G + ++ + L+ + + ++D L Sbjct: 373 GGRLFCVFG----CGGDRDPGKRPMMGAIAEKHADVAVLTSDNPRSEDPQAIIRDVLAGM 428 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H + + + GDVV+V K Sbjct: 429 DAARAHVEADREAAIHWAVAQARVGDVVLVAGKG 462 >gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] Length = 503 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 146/472 (30%), Gaps = 42/472 (8%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L A+ + G + G+S+DSR + FFA+ G G D I +A++ GA ++ Sbjct: 12 LAALGLRAKGGR-DATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILT 70 Query: 71 NTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + + S + +D GAL A T+IA+TG+ GKT+ Sbjct: 71 DAQGAQIAAKELADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFA 130 Query: 127 TIALSSIK-------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 ++ + + S G Sbjct: 131 RQIWIEMELAAVNLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHG 190 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + V A T HL E AK +F L + + D Sbjct: 191 LDQRRLDGVVLAAAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKG 250 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + G+ +A +L + S + Q S + IG A Sbjct: 251 PEVVQIAESRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQA 310 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L+ +V D + A L GR + N G +D ++ + + Sbjct: 311 DNVLLAAALVIAAGGDPEEAFDTLPYLTTVRGRMQHAATRRN-GGSVFVDYAHTPDAVAT 369 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410 L + PH G+ IA++G G + L ++ N V+++ + Sbjct: 370 -----ALMAMRPHVMGKLIAIVGA----GGDRDTGKRPLMGQAAVQNADMVFVTDDNPRS 420 Query: 411 -------VLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + AL V L +L GD +++ K Sbjct: 421 EDPRVIRAAVMAGALENAAGKSVIEVGDRAEAILRGIDALGPGDALLIAGKG 472 >gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] Length = 486 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 148/474 (31%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ A++ + + I DSR + F A++G DGH ++ A++KGA Sbjct: 3 LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 +V S V D AL L K ++ +TG+ GKTT Sbjct: 63 AIVCEE--TPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLMLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 +L + Y + P +L V+ + +S Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T + HL +E AK + F+ L N DD Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A + ++ ADF+ + + E + + + + H +G Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G L D + + LS GR + + L + +A Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL G+GR I V+G G L ++ V L+ + Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAVKLSDQVILTSDN 403 Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GDV++V K Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457 >gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2654] Length = 495 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 157/476 (32%), Gaps = 38/476 (7%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P T L A+ + G + G+S+DSR++ P F A+ G G +FI +A Sbjct: 1 MAPQKTLP--LSALGLRAKGG-QDVEITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYA 57 Query: 61 VQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 ++ A ++ + + + + + +D AL A ++A+TG+ Sbjct: 58 LRMEAAAILTDREGARIAADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGT 117 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF- 165 GKT+ + + A IG+ P+TL R+ ++ Sbjct: 118 NGKTSVASFTRQIWTELGLMAANIGTTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVT 177 Query: 166 --ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + S G + V A T HL + ++ AKA +F + + Sbjct: 178 HAAMEASSHGLDQRRLEGVHLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGV 237 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + D + + + S G++++ QL + + G+ V Sbjct: 238 AVLNVDDPRGRELEEIAQERGQEVISIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTV 297 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A+N+L+ G+ + + A + + G +D Sbjct: 298 QLDLIGGFQAENVLVAAGLAIA-SGSDPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVD 356 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ + + L + PH G+ + V G G + L + Sbjct: 357 YAHTPDALAT-----ALEALRPHVMGKLVVVFGA----GGDRDTTKRKLMGKAAADYADV 407 Query: 404 VWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ A++ + + L L GD +++ K Sbjct: 408 VIVTDDNPRTEDPAAIRAMVLEGCPDANEYGDRAEAILRGVDMLDPGDALLIAGKG 463 >gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] Length = 482 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 87/459 (18%), Positives = 155/459 (33%), Gaps = 36/459 (7%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G ++ + G++ DSR++ P F A+ G DG FI A++KGA ++V Sbjct: 7 SGPALPEGGATEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLV---P 63 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + + + ++PV + L +A A T+ A+TG+ GKT+ L +++ Sbjct: 64 LDAAVAANVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALG 123 Query: 135 KT------------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTH 180 + A + G+ + S G ++ Sbjct: 124 EEAASLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLD 183 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 V+ A T I H+ + ++ AK +F + G I + DS Sbjct: 184 GVKLRAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVC 243 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I S G+ K L + +E+ +GK+ V +G A N L+ Sbjct: 244 WARGHRIISVGR-KGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAA 302 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + AL +GR + N ID ++ + + L Sbjct: 303 GLAIGCGGAAEKVFAALEKLTGAKGRMEEAAHLPNGA-SVYIDYAHTPDALE-----NAL 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415 I PH GR V G G + L + ++++ A++ Sbjct: 357 EAIRPHTAGRLSIVFG----CGGDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIR 412 Query: 416 DALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + +L GDV+VV K Sbjct: 413 AAVLKGCPGAIEIGDRAAAIETAMRALQPGDVLVVAGKG 451 >gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] Length = 497 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 158/476 (33%), Gaps = 43/476 (9%) Query: 7 FHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L + + G + V+ ++ DSR + P FF I+G DGH F A + GA Sbjct: 3 AKELADLLVIKRVEGSLENIVVDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123 + V + + +G PV V DV + A +I +TG+ GKTT Sbjct: 63 NVFVASKPIKEQVGDS--PVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVT 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGM 169 M+ L + K A IG+ IG R + E + + Sbjct: 121 HMVDYLLEELGKPTALIGTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEV 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNY 227 S + ++AV T + HL +E A AK+ G Sbjct: 181 SSHALQLGRVWGIDYNVAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVA 240 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + I S+G S+ AD + + + + V + G+ + V+ Sbjct: 241 ILNRDQEYFGQFAYSTSAEIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPM 300 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG N+L G+ + + AI+ ++ F GR + + + Sbjct: 301 IGLFNVYNVLAAFGVAMVNGIPLRKAIEKIAKFPGVGGRMQLIQKGQPFQVIID----FA 356 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ +S L ++ + V+ M G S ++ +V L+ Sbjct: 357 HTPDGLENVLSTLEEVKINR------VITIMGHSGGNRDSSMRPELGEIAFEKSDYVILT 410 Query: 408 GFHVL-----ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + +GD+++ K Sbjct: 411 ADNPRQESLEKIYSEIVSGRKNENTPYECVDDRKQAIERALELAQEGDILLFAGKG 466 >gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2083] gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium HTCC2083] Length = 487 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 74/461 (16%), Positives = 142/461 (30%), Gaps = 35/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71 G + + GI++DSR + F A+ G G +FI +A++ AG ++ + Sbjct: 5 GLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTDAVGA 64 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + + DD AL + + A+TG+ GKT+ + + Sbjct: 65 EIAADELANSDAAIIVTDDPRSALAFASALYFGAQPQIMTAVTGTNGKTSVSTFVRQIWN 124 Query: 132 ----SIKKTYACIGSYNNHIGVPLTLARMPVDVD---FGIFE------LGMSHLGEIRFL 178 + H+ + T + E + S G + Sbjct: 125 LLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGLDQRR 184 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL E AK +F + + + + D A Sbjct: 185 LDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGAEVAM 244 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G+ AD L + ++ + + + + IG A+N+L+ Sbjct: 245 IAQAHGHELIGVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAENVLL 304 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D L GR + N +D ++ + Sbjct: 305 AAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGA-AVFVDYAHTPDAVET----- 358 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 L + PH GR +A++G G L + N V+++ + + Sbjct: 359 ALKAMRPHVMGRLVALIGA----GGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPAL 414 Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L +L GD +++ K Sbjct: 415 IRAAVMGGAPEAIEVADRAEAILRAVDALGPGDALLIAGKG 455 >gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 494 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 80/460 (17%), Positives = 151/460 (32%), Gaps = 42/460 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + V + +DSR+I + F AI G DG FI AV +GA VV GS Sbjct: 21 ELASIAVEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGS 80 Query: 81 L----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131 + ++PV V ++ L++LA +I +TG+ GKTT +++ L Sbjct: 81 VEWLDAVPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140 Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLV 182 + + + N G + + R + + + +S LG ++ + Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVKAL 200 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + V T ++ HL +EE A AK +F + + D+ + S+A+ Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQHKCKHAVINVDDEVGKAWMVDLSNAV 260 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + G + ++ IG A N+L+ Sbjct: 261 AVSLLPLSG--YQQSVWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFAT 318 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D T I P GR + ++ + +A L+ Sbjct: 319 LLSLGIDKQTLIDTAPQLQPVIGRMELFQVPNKAKVVVDYAHTPDA-------LEKALAA 371 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H G+ A+ G G + + V + + +S + Sbjct: 372 LRVHCSGKLWAIFG----CGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKD 427 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L F + D++++ K Sbjct: 428 MLAGLSEPEAAFVEHDRYQAVKFALEQAGNNDIILLAGKG 467 >gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 488 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 77/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKG 455 >gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] Length = 483 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 37/459 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 P G++ DSR +AP F A+ G DG DFI A+ GA V+ + Sbjct: 5 QIFDNAPDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGAIAVLTDER--- 61 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 G IP V + A K A A + ++A+TG+ GK++T + L + + Sbjct: 62 -DGEWEIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHV 120 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 A +G+ P + + + S G ++ H Sbjct: 121 SASVGTLGAVG--PSGAVELGHTTPDPVAVQSTLAILANEGVTHCAMEASSHGLAQYRMH 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 V+ ++ HL E+ +AK ++F L G + DS + Sbjct: 179 GVQLAAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIA 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 ++ G + + + + Q + + + L L Sbjct: 239 TAANLKPFTVGWRGDHLWIDEISPRNTGQKLQLQWETPEGDKETIVNLPLIGEFQALNAL 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I + + + +G R I + P + + Sbjct: 299 AAAGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQNGAGIFVDFAHTPDGLDTLLRAA 358 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415 PH GR I V G G + + ++ V ++ +++ Sbjct: 359 ---RPHAAGRVICVFG----CGGDRDAGKRPIMGEIAAKYADEVIVTDDNPRSEDPASIR 411 Query: 416 DAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + S L GDV+++ K Sbjct: 412 AAIMAGAPNATEIDGREAAIKEGISRLKKGDVLMIAGKG 450 >gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 499 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 157/473 (33%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 10 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA +V D +I +PV VDD L A + ++A+TG+ GKT Sbjct: 67 VKRGAVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 362 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 363 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKG 466 >gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas tunicata D2] gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas tunicata D2] Length = 489 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 72/474 (15%), Positives = 141/474 (29%), Gaps = 46/474 (9%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL + V + +DSR I +AF AIKG DG F+ A+ GA + Sbjct: 3 ADLAPIL-ARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAI 61 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEM 125 +V+ + S I V + L +L+ + +I +TG+ GK+T M Sbjct: 62 ALVDEQCECTFASDKI--IRVAQLDKKLAQLSAQFYGKPSEELALIGVTGTNGKSTITSM 119 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD----------------FGIFELGM 169 + + G P L + + + + Sbjct: 120 IA--YLAQVCGSKSAVIGTLGWGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAMEV 177 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G ++ R AV + ++ HL ++ A AK +F ++ D+ Sbjct: 178 SSHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEISVINQDDE 237 Query: 230 -SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L++ + + + + + + E+ Sbjct: 238 VAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKCPLY 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+ + L +D +A+S P GR + + A + +A Sbjct: 298 GQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTCVVDYAHTPDA 357 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L + H G+ V G G L + + + ++ Sbjct: 358 LAL-------ALQALQLHVPGKVTCVFG----CGGNRDKGKRALMAQAAERFANKIIVTS 406 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + HV E + +V+++ K Sbjct: 407 DNPRNEDPKAIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKG 460 >gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 482 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 135/449 (30%), Gaps = 40/449 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I IDSR + F A+ G DG FI AV +GA +V + V GS IP VD Sbjct: 20 ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVCRHNEVEYCGSA-IP-IVVD 77 Query: 90 DVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKK---------TYA 138 D L +LA II +TG+ GKTT +L + Sbjct: 78 DPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTIAYRW 137 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRPHIAVITTIA 193 S + P L + + + +S + + + T + Sbjct: 138 PGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGISFKGVIFTNLT 197 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL ++E AKA +F I + D+ + AK I + + Sbjct: 198 QDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKLVPEIIGFGFKNKPT 257 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + +++ K S + + + L+ + +S+ Sbjct: 258 QVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLAVQAISLQLGLAPED 317 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 F GR +R F + +A I+VLS + G R I Sbjct: 318 FCCFEKFTGVPGRLERIVNKKQLDIFVDYAHTPDA-------LINVLSALRDVGFKRIIT 370 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRSIHV 424 V G G L L+ + + D L ++ + Sbjct: 371 VFG----CGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGLKKAKQI 426 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GD ++V K Sbjct: 427 ITEPDREKAIRQAIELVSPGDALLVAGKG 455 >gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC 35896] Length = 510 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 88/494 (17%), Positives = 161/494 (32%), Gaps = 41/494 (8%) Query: 5 WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 LLQ + + ++ ++ S + F IKG DGH ++ AV+ Sbjct: 1 MKLSKLLQNVSVIEYKNVDMDLEISSLAYHSAKVEQNGLFVCIKGYKADGHKYLASAVEH 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 A + VV T + IP V+D AL ++ K T+I IT + GKTT Sbjct: 61 NAIVAVVET-----FQDIDIPQVKVEDSRIALATMSSNYYDNPSKKMTVIGITATNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------GVPLT---LARMPVDVDFGIFELGM 169 T M+ L KK IG+ P + M + V+ G+ L M Sbjct: 116 TAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLTTPESLDLQKYMAMMVEQGVTHLTM 175 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S H V I+ H+ E+ K+ + G++ + +N Sbjct: 176 EVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSFEDYFQIKSTLIRGMKPSAKAVINA 235 Query: 228 DDSFFELLKAKSHAL------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 DDS L + + + + WK + + L + Sbjct: 236 DDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLSTGIANWKIVPNPTKSTLSLLNSEV 295 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 ++ GYH N + + + + D+DT L F E R + + Sbjct: 296 KIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGLHSFKGVERRFELIYDKEFKIIDDH 355 Query: 342 IDESYNA--NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + N ++K G R V+ S ++ L ++ Sbjct: 356 FANTGNIRVTLETLKKMKYEQLHFIYAIRGSRGVVVNRENAEEICSGIENLPLKTFVATK 415 Query: 400 NISHVW----LSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 ++ HV ++ + +D + V + ++ F+ + GDV+++ Sbjct: 416 SVHHVTEKDKVTQEEITVFQDIMNCCERTVPIYDDLEEAIAFVLKEVQPGDVILLAGCQG 475 Query: 455 CG------FYRLIN 462 +L + Sbjct: 476 MDSGGKLLLEKLAD 489 >gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 462 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 167/412 (40%), Gaps = 17/412 (4%) Query: 62 QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KG LV+ + +L V V V A R + ++A+TG+ GKT Sbjct: 59 RKGPSLVISDKPATELKNALDNTTVLHVKSVAQAYWTFIEYYRGLFQIPVVALTGTCGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML S + A + S N L + IFELG+ + G I+ Sbjct: 119 TTKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGLGNTGNIKHQCM 178 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I +IT I HL +E AKAEI EG+ GT+ +N DD+ E + + Sbjct: 179 IYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGTLLINADDANIEKISLQKF 238 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I FG +AD++ + +++ V G G H N L + Sbjct: 239 KGKIIR---FGLQDSADYKASAIEFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAI 295 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 S + + AI L F + G T+ID+++ NP S++AA+ VL Sbjct: 296 AACSEMGLSIRQAIAGLRTFK---QMARHLEFTKGIGDSTIIDDTWTNNPTSVEAALKVL 352 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + I VLGD+ +G + +H ++ ++ I + G A+ D + Sbjct: 353 DTVGKEKK--VILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITIGKRAEAIADQAKK 410 Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSCGFYRLINLLLE 466 VH + + G+ ++ L +V++K S S N L Sbjct: 411 DGTKAEVHTFKDVTGVLEILKPKLDADTIVLIKGPMSSRSM--IEFANNLKN 460 >gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] Length = 489 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 148/472 (31%), Gaps = 42/472 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L+ + P+ + + +D+R + P F A+KG DG F+ A QKGA Sbjct: 5 LKQLMAGLNIQ----APEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAA 60 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + LSIP V + +++LA K ++ +TG+ GK+T + Sbjct: 61 AILFDNSDGFVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQ 120 Query: 125 MLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMS 170 ++ + G + + + ++ + E + +S Sbjct: 121 LIANWTELFGQRGGVLGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ ++ AV T ++ HL ++ A AK IF+ I D + Sbjct: 181 SHGLVQHRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPECCILNADDAT 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 E L A+ + K + + + + +G Sbjct: 241 AREWLLQMPQAVVYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLLGK 300 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L L ++ +L D +T + S P GR + + + + Sbjct: 301 FNVSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFGNQDQPLVVVDYAHTPDG-- 358 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L H G + G G ++ + L+ + Sbjct: 359 -----LEKALQAARQHCHGHLFCLFG----CGGDRDRGKRPQMAAIAEQWADTLILTDDN 409 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + H + + V GD++++ K Sbjct: 410 PRTEDPAAIIADMCAGLQKPEQAHIEHSRPKAIQLALAQAVPGDIILLAGKG 461 >gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] Length = 487 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 99/478 (20%), Positives = 171/478 (35%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLLQ I +NG+++DSR + F A+KG DGH FI A++K Sbjct: 1 MMKLSDLLQKISPLETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGHAFIAGAIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA ++V+ + A + V D A+ K+A + ++ +TG+ GKTT Sbjct: 61 GASAILVSEPIPAET-PTDVTFVRVADTEDAIGKVATTFYGDPTQRLKLVGVTGTNGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM---PVDVDFGIFEL 167 +L + + + N+IG P+TL ++ D + Sbjct: 120 IATVLYHLFTELGFKCGLCSTVCNYIGTHAVPTEHTTPDPVTLNKLLGEMADEGCEYAFM 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + + A+ T + HL E AK F+GL K N Sbjct: 180 ECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKKAFFDGLSKQAFAITNA 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A I ++ AD++ + ++ E + L+ EV Sbjct: 240 DDKNGPIMVQNTKA----RIKTYSTRAAADYKGKILEESLEG----MLLEINGREVSVRF 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G N+L G L D ++ LS HP GR + R Y Sbjct: 292 VGRFNVSNLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFEAIRSPKGVSAIID----YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ +S + +I HG+ + I V G G L + V ++ Sbjct: 348 HTPDALANVLSSIDEI-VHGKAQVITVCGA----GGNRDKGKRPLMAQEAANRSDRVIIT 402 Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFL------FIQSSLVDGDVVVV--KS 451 + + D L ++T+ + + GDV+++ K Sbjct: 403 SDNPRFEEPQAIVDDMLAGLDETQRAKTI-AIVDRREAIRAAAAMAQAGDVILIAGKG 459 >gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus thermodenitrificans NG80-2] gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacillus thermodenitrificans NG80-2] Length = 489 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 75/477 (15%), Positives = 147/477 (30%), Gaps = 46/477 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + G + + + +DSR + P FF +KG DGHDF AV++G Sbjct: 1 MKLQTLLSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + ++ + + D A+ LA A + + +I +TG+ GKTTT Sbjct: 61 AVAIVAERPLSVNVPVVVV-----PDSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ K IG+ IG + + E + Sbjct: 116 THIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S + H +AV T + HL +EE A G Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + I ++G + +D + + ++ +M + Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + T +AL+ P GR + N + Sbjct: 296 LVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETVDEGQNFTVIVDYAHTP 355 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ++ + L + + V+G G L ++ Sbjct: 356 DS-------VENALKTVRQFAKRNVYVVIG----CGGDRDRTKRPLMAQAAVRYADVAVF 404 Query: 407 SGFHV---------LALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + + + + +GDVV++ K Sbjct: 405 TSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461 >gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] Length = 496 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 155/475 (32%), Gaps = 45/475 (9%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +LL+A++ + G V GI+ DSR + P+ F AIKG DGH++I A+++GA Sbjct: 4 RELLEAVEADAAGGDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGALA 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEM 125 VV+ + + V D AL L+ K +I +TG+ GKTTT + Sbjct: 64 VVMERRVE---LPPGVAWALVPDARRALALLSARFYGNPSFKMKLIGVTGTNGKTTTTSL 120 Query: 126 LTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE-----LGMSH 171 + L+ IG+ NN IG P + + + I + + +S Sbjct: 121 IADILAGAGCRVGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEMVIEKVDACVMEVSS 180 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIFLNYDD 229 +AV T + HL +E+ K + G Sbjct: 181 HALALHRVDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREAGIAVI 240 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + T+Y++G AD + + + V + + + G Sbjct: 241 NADDPHAGQFIRAAGGTVYTYGIKNAADVRAESISIGARGACFGVAGKWGRLRLDLRITG 300 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L + + + +AL GR + + + + Sbjct: 301 LFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVDSGQDFAVVVDYAHTPDG- 359 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 ++L EGR I V G G L ++ ++ Sbjct: 360 ------LENILKTARKITEGRLITVFG----CGGDRDRTKRPLMGGIAARYSDFAIITSD 409 Query: 410 H---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +++ + + Y GDVVV+ K Sbjct: 410 NPRTEDPLKIIKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGKG 464 >gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] Length = 502 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 92/480 (19%), Positives = 169/480 (35%), Gaps = 47/480 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL+ + + G+S +SR+I P + F A+ G DG +I A+ GA Sbjct: 3 LSDLLKNL-ADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGAR 61 Query: 67 LVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 +++ + + A + L P+ V++ L K A + I A+TG+ GKT+T + Sbjct: 62 VILTDMRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTDF 121 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-------------------VDFGIFE 166 L + + + IG+ + +D D G+ Sbjct: 122 LRQLWTRVTWQASSIGTLGVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDAGVTH 181 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 L S G ++ + HIA T + HL + + +E AK+ +F L Sbjct: 182 LALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMHAGAA 241 Query: 225 LNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + D + + I +FG + +ADFQ+ K M V+ GKS Sbjct: 242 IINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDNILDMSVKHDGKS 301 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + G A N L + + + ++ L+ P GR + Sbjct: 302 WHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGR---MQTVTGHPQGA 358 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I + P +++AA+ + P + + G G L ++ Sbjct: 359 QIVVDFAHTPDALRAALEA---LRPEVSHKLYVLFG----CGGDRDPSKRALMGAIADDA 411 Query: 401 ISHVWLSG-----FHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ +++ A+ + D LV+GDV+++ K Sbjct: 412 ADVVIVTDDNPRSEDPASIRSAIMAASPKSIEIFP-RDTAIKTALEQLVEGDVLLIAGKG 470 >gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 2336] gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336] Length = 495 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 85/487 (17%), Positives = 155/487 (31%), Gaps = 57/487 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LW + + + + +DSR F AIKG DG +FI+ A+ Sbjct: 5 TALWDIDE-------QLDSVHRDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAI 57 Query: 62 QKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115 Q GA V+ TD+V +IP+ ++ L+ +A T++ +TG Sbjct: 58 QNGASAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165 + GKTT ++L + T A +G+ N G+ + I Sbjct: 118 TNGKTTIAQLLAQWTQILGHTSAVMGTIGN--GLFGQIKEASNTTGSAIEIQSSLDKFIR 175 Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +S G ++ + + T ++ HL +E A AK +F L Sbjct: 176 QGADFAAIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNC 235 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQ 275 I D+ L S S D + S+ + +E Sbjct: 236 QHKILNVDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFA 295 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + + IG N+L+ L + L D+D + + GR + Sbjct: 296 SSWGNGILSSPLIGGFNVSNLLLVLATLLSLGYDIDKLLATVRQLTGVCGRMEMLSAKHK 355 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +A + L + H +G+ + G G L Sbjct: 356 ATVIVDYAHTPDA-------LENALQSAAVHCQGKLWCIFG----CGGDRDRGKRPLMAA 404 Query: 396 LSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 ++ V ++ + + + +S V + S V+ DV Sbjct: 405 IAEKFADSVIVTDDNPRTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDV 464 Query: 447 VVV--KS 451 V++ K Sbjct: 465 VLIAGKG 471 >gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] Length = 498 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 61/476 (12%), Positives = 149/476 (31%), Gaps = 47/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+ I + V +++DSR P F A++G DGH +I A+Q+GA Sbjct: 9 LKDIFYKIPLLATSGSMNTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYIETAIQQGAT 68 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + + + + V + + +A + K +I +TG+ GKT+ Sbjct: 69 AILCEE--IPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLIGVTGTNGKTSVAT 126 Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTL-------------ARMPVDVDFGIFELG 168 +L ++ + + + + +P T + E+ Sbjct: 127 LLFRLFRALGYRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLLTKMLAHGCTHVFMEV- 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S ++ + + T I HL + AK F+ L + N D Sbjct: 186 -SSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKKGFFDQLPASAFALTNVD 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++ A F+ + M + + +++ Sbjct: 245 DKRGLVMLQNTVARKE----TYSLQTLASFKGKILADSLFGLNMLIDEREVWFKLIGQFN 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 Y++ + + + L++ R+ ++ I + Y Sbjct: 301 AYNLLSVYGTAILLGE-------DPTEVLTMLSGITPPPGRFEQVVSDDKIVGIVD-YAH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + ++++ E + + + G + + ++ + V L+ Sbjct: 353 TPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPIMADIACRLSNRVILTS 412 Query: 409 FHVL-----ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + E D+++V K Sbjct: 413 DNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELAKPHDIILVAGKG 468 >gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] Length = 483 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 87/472 (18%), Positives = 161/472 (34%), Gaps = 42/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL I+ G V V ++ DSR++ + F A KG +DG+DF A++ G Sbjct: 1 MNLKELLNNIEAKIYGKVSPIEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A + + LS+ ++ +L+ I+ +TG+ GKTT Sbjct: 61 AIAIASS----IYNPFLSVVQIVSSNLPQLEAELSAKYYNYPSKKLCIVGVTGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ K IG+ + +G + + + Sbjct: 117 SHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRLTSAVME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +G + V + V+T I HL EE +AK ++F L TG +N D Sbjct: 177 VSSVGLVLERLAEVDFDVGVLTNITLDHLDFHGSFEEYINAKLKLFSKLPATGLAVVNGD 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 S+ + A I ++G AD++ + + ++ +G+S+ I Sbjct: 237 LSYASRFLEMTQAQPI----TYGIECPADYRAMHLRSSPFGTDFDLVYRGESLPCRLPLI 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N+L + + + +L+ E R + ID ++ Sbjct: 293 GKHNVYNILAAIAVAHQHCNGDLQQLISLAAN--VESPRGRLEPVFSGPCPIYIDYAHTP 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + +++ L + P +G+ I V G G + + V S Sbjct: 351 D--ALENVCKTLHALLPE-QGKLIVVFG----CGGDRDQSKRQIMAEVVERYGFAVVTSD 403 Query: 408 ---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 G + A+ + S D D+V+V K Sbjct: 404 NPRGEDPEEIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455 >gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] Length = 514 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 82/481 (17%), Positives = 153/481 (31%), Gaps = 48/481 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T LL + + + DSR ++ + F A+ G +G DF A+++GA Sbjct: 11 TLKALLH--GIAEVSAAADRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGA 68 Query: 66 GLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 V+ + + + + + + +++L+ A TI +TG+ G Sbjct: 69 VAVLSEQSIEEPSLLESASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDG 128 Query: 119 KTTTKEMLTIALSSIKKT------------YACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 KT+ L AL+++ + N G + GI Sbjct: 129 KTSVAHFLAQALTALNPPVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRH 188 Query: 167 LGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + M S G + + V +AV+T + HL + + A AK ++F ++ Sbjct: 189 VAMEVSSHGLDQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKASVL 248 Query: 225 LNYD---DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 D L+ + G A + + + +V G+ Sbjct: 249 NCDDDFGCMLALELEERLPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSGGQRY 308 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G A N+L + + L + A++ +S P GR + + Sbjct: 309 TVDVALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRMECLKLPNGAVAVVD 368 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + A LS + H GR V G G L + Sbjct: 369 YAHTPQA-------LEQTLSSLREHSGGRLFTVFG----CGGDRDKGKRPLMGRAAERFS 417 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 +WL+ + + + L H + + S GDVV++ K Sbjct: 418 DALWLTDDNPRSEKPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGK 477 Query: 451 S 451 Sbjct: 478 G 478 >gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] Length = 484 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 152/456 (33%), Gaps = 52/456 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FF IKG + DG+DFI A+ KGA LV+ + I V Sbjct: 19 VKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 74 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V DV AL + ++ +IA+TG+ GK++ + S + K A IG+ Sbjct: 75 YVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 134 Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 VP + +++ +FE S G + ++ +I Sbjct: 135 IFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T+ + HL E AK ++F I + D Sbjct: 193 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + GK + + + + + IG A N+L+ + + Sbjct: 253 FITVGKKGDLEITRINGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYT 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D I +L +GR +R + ++ +K Sbjct: 311 GFAFDDVIDSLVEVKAVKGRMERIDNTHIFVDYAHTPDALAKALTELKNI--------KL 362 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 + V G G L ++ + + ++ + + Sbjct: 363 RGSKLSVVFG----CGGNRDKAKRSLMGQIAAKHADTIIITDDNPRNEDPKLIRAEIISG 418 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + + ++L D ++V K Sbjct: 419 IEKADYTEIA-NREEAIKYGINNLKQDDTLLVAGKG 453 >gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] Length = 488 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 98/472 (20%), Positives = 169/472 (35%), Gaps = 42/472 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL A+ I V V+ I IDSRS+ P F IKG DGHD+ AV GA Sbjct: 3 AEELLSALPLKKIIGVLPDQVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 +VV ++ +I V D A+ LA T+I +TG+ GKT+ Sbjct: 63 IVVTERELP---LGETIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 119 Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFELGM----------S 170 ++ + + + A N G+ A D IF M S Sbjct: 120 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G V IA+ T + HL +EE AK +F L + + Sbjct: 180 SHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLN 239 Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + A+ ++++G K++NADF+ + + +V++ V + +G Sbjct: 240 ADDAWSERYAAMTPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRVKMNLLG 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L + +++ I+ + P +GR ++ L F + +A Sbjct: 300 EFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSELPVQIFIDYAHTPDA- 358 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + P+ +G+ I ++G G +S +AE S +V L+ Sbjct: 359 ------IEKAIEAAQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKASAA--EYVILTTD 407 Query: 410 HVLA------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 D +H +Y+ GD+++ K Sbjct: 408 DPRYEDYDSITGDLAKGMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKG 459 >gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gloeobacter violaceus PCC 7421] gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gloeobacter violaceus PCC 7421] Length = 489 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 100/476 (21%), Positives = 164/476 (34%), Gaps = 46/476 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P H+LL G +P + G+S DSR + P + F + G DG +F A+ Sbjct: 2 PAMRLHELLART-GLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAIA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 GA +V++ + ++PV V DV+G +LA A K T+ +TG+ GKT Sbjct: 61 GGAAGLVISENARG--VEAAVPVIRVPDVVGTCARLASAYYDFPARKLTLAGVTGTNGKT 118 Query: 121 TTKEMLTIALSSIK--------KTYACIGSYNNHIGVPLT-------LARMPVDVDFGIF 165 TT ++ L + + S P + +G+ Sbjct: 119 TTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYGVM 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH + + R AV T + HL +E AKA +F ++G + Sbjct: 179 EV-SSHALAQQRVAGC-RFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPEYRSGRAVI 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + L A + +++ AD E + Sbjct: 237 NADDPWGVRLAAAYDQV-----WTYSFQPGADIYPEDAVFTPEGIRGTLVTPVGRAAFTS 291 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L +G L D++ LS F GR + Sbjct: 292 PLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGR---MERVSGSDDDIAVIVD 348 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P ++ + P GR I V G G+ ++ + + + + V Sbjct: 349 YAHTPDGLRKLLEAT---RPFVRGRLICVFG---CGGDRDRTKRPQMGRIAAELSDLPVV 402 Query: 406 LSG----FHVLALKDALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVVV--KS 451 S + A+ D + I V S T++ L GD VV+ K Sbjct: 403 TSDNPRTENPEAILDDILAGIPVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKG 458 >gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 535 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 92/514 (17%), Positives = 174/514 (33%), Gaps = 58/514 (11%) Query: 5 WTFHDLLQAIQGHSIG------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 DLL++++ SI + + +N I+ S+ + F IKG DGH++ Sbjct: 1 MNLTDLLKSVEIDSIRPNQIETELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYAK 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 HAV +GA +++V I L + V + L L+ + ++ +T + Sbjct: 61 HAVSQGATVIIVEQ----FIEDLDVLQLKVSNSREVLAILSSNFFDQPSKSMSLFGVTAT 116 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLGE 174 GKTT M + + IG+ I + ++R+ P D + M Sbjct: 117 NGKTTITYMTEEIFKAYQLKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKMRDQEI 176 Query: 175 IRFLT------------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + + T I+P H+ E AKA + K T Sbjct: 177 THVSMEVSSSALELKRVYHTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRNASKMST 236 Query: 223 IFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---- 276 LN D+ L ++ A + G +D + + + E Sbjct: 237 AILNLDEQLLIPLAEETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQEPFNTLSG 296 Query: 277 ---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + S ++ GYH N L L + ++ + + F E R + Sbjct: 297 ERIEPTSFDLELSIPGYHSIYNALTALVTGLVNDIPLEYVQRGIKNFRGVERRFQILYDK 356 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + + + N ++ + + ++ + + A+ G S LA Sbjct: 357 EFK-----VIDDLLLNQNNIDSCMETINHLDYNELHLVHALRGSNG--PAHSTEIAESLA 409 Query: 394 EVLSLYNISHVWLS--------------GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 + IS + L+ LK +I V +S +D F Sbjct: 410 KWFHELKISKIILTTASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALRFGVE 469 Query: 440 SLVDGDVVVVKSSNSC--GFYRLINLLLEEFPAI 471 L + DV+++ ++S G + + LL E +P + Sbjct: 470 RLNEEDVLLISGAHSMDQGARKTLELLKEIYPTV 503 >gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] Length = 496 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 152/469 (32%), Gaps = 50/469 (10%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G I V + +S+ P + F A+ G H DGHDF+ A+ GA ++ Sbjct: 2 LPGAKILGAEDIVVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERA 61 Query: 74 MVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + PV V++ A ++ A+A + +I +TG+ GKTT ++ + Sbjct: 62 L-----PTTRPVCIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIME 116 Query: 132 SIKKTYACIGSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEI 175 + T S G + E S Sbjct: 117 TAGATVGMSSSLGYDNGYDRQPWDCTTPNAAVLADLLSRMEYNGCTHAVVE--ASSEALS 174 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 R + IT + HL + AK +I L +TG +N DDS L Sbjct: 175 RDRLDGIELDAVAITNLRQDHLDVHGSVTNYHRAKKKILGRLRETGFAVVNADDSACNKL 234 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 ++ + S A+ ++ + + +++ V IG H N Sbjct: 235 LSQIETPAL----SVALHGAAEITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYN 290 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L+ + + D+ T ++ L GR +R C G F + +++A Sbjct: 291 CLVAAAVGLVYGVDLKTVVRGLERVDSIPGRMQRIECGQPFGVFVDLAHTHDA------- 343 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHV 411 L + GR I V G +G+ S+ L ++ ++ G Sbjct: 344 LAMALKALRRVTHGRVICVYGADG-LGDPSK---RPLLGRVAERGADLSLITSANPGDES 399 Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + D R H + S GD V++ Sbjct: 400 PLEVIHDILDGYERPARAHVMPNRAAAIEWALSEAQTGDTVLIAG-RGT 447 >gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella frigidimarina NCIMB 400] gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella frigidimarina NCIMB 400] Length = 496 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 74/481 (15%), Positives = 151/481 (31%), Gaps = 51/481 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +DLL + VNG+++DSR + F A+ G DG FI A+ GA Sbjct: 3 LNDLL----APWFHYSGRESVNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGAT 58 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVL-----GALNKLAVAAR--LRSKATIIAITGSVGK 119 ++++TD G + + V V L+ +A ++I ITG+ GK Sbjct: 59 AILIHTDNPDEHGIVDRLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGK 118 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------F 165 T+ +++ + + + N G + D + Sbjct: 119 TSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELC 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ IAV T ++ HL ++ A+AK +F+ + Sbjct: 179 AMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFKFPSIKHGVIN 238 Query: 226 NYD---DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSM 281 D + L + + S + + + S+ Sbjct: 239 IDDAVGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAGVTATLHFVEIDSEKSVSV 298 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 ++ +G N++ + ++ + + + + L + P GR +R+ N Sbjct: 299 QLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERFSSVNNATLVVD 358 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A L + H +G V G G L + Sbjct: 359 YAHTPDA-------IEQALKALRLHCKGTLWCVFG----CGGDRDKGKRPLMAQAAERYA 407 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V ++ + + + + V + S D+V++ K Sbjct: 408 DKVMITSDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGK 467 Query: 451 S 451 Sbjct: 468 G 468 >gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 487 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 74/476 (15%), Positives = 155/476 (32%), Gaps = 46/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + + I +DSR + P F I G DGH F AV+KG Sbjct: 1 MDLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ + + + + A+ LA A + K +I +TG+ GKTT Sbjct: 61 AVAILAEKPVDVEVPVVRV-----KSTKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTI 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ S K IG+ IG + + + E + Sbjct: 116 THLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S H +AV + + HL +E+ A G Sbjct: 176 VSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + T+ ++G +++D + + + + ++ +++ V Sbjct: 236 AVLNADDAATEEYIKNTAATVITYGIDRDSDIRATNIQITNSGTTFDLTTPTETVRVEMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + + ++ + V GR + + FT+I + Y Sbjct: 296 LIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGR---FEVVDAEQDFTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + + + + + ++G G + ++ + L Sbjct: 352 AHTPDSLENVLKTVKEFA---KRNIYVIVG----CGGDRDRTKRPIMARIAAEYSTQAIL 404 Query: 407 SGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +++ L +V + + + DVVV+ K Sbjct: 405 TSDNPRSEDPLAILKDMEEGLDTDNYVTIA-DRAEAIRYAVEAAHADDVVVIAGKG 459 >gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] Length = 496 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 72/463 (15%), Positives = 138/463 (29%), Gaps = 58/463 (12%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-------- 82 ++DSR + + F A+KG DG FI +A+++GA +++ D L Sbjct: 25 TLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNL 84 Query: 83 -----IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 V V + L+++A K T+ ITG+ GKTTT ++L Sbjct: 85 DRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQW--HNLL 142 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLT 179 G+ + I + +S G +F Sbjct: 143 GGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRA 202 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + +A+ T ++ HL + +EE A AK + T +N DD + Sbjct: 203 EALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRL-FNELSTKAQVINADDEIGREWLTQL 261 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + K + + + + + E+ IG N+L Sbjct: 262 PNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTA 321 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L D+ +K GR + + +A Sbjct: 322 FAGLLALGFDIQELVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDA-------LEKA 374 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410 L H EG + G G + L ++ V + + Sbjct: 375 LQAARLHCEGELWCIFG----CGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKI 430 Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + DV+++ K Sbjct: 431 MADIVKGFSKPQQIIH--NREEAIKTAIEQAKATDVILIAGKG 471 >gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] Length = 522 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 96/473 (20%), Positives = 165/473 (34%), Gaps = 46/473 (9%) Query: 8 HDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL + P + G++ DSR++ P F AI+G DGH FI AV GA Sbjct: 42 ADLLDETIAGAEAPDPDTLAIGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGAR 101 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 LVV A + V D AL + A A + ++ +TG+ GKTT Sbjct: 102 LVVCEALPTRARERFPGVVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVA 161 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGM 169 ++ L ++ +T + + G V R VD + + Sbjct: 162 YLVHHLLEALGETAGLLSTIKVQAGGETTALALTTPGPLVLHRTLRRMVDRGCTACAMEV 221 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + H + +A+ TT++ HL +++ +AK +F+ L T N DD Sbjct: 222 SSHALDQDRVHGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNADD 281 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + A + A + SFG ++AD + + + ++ E G Sbjct: 282 EAGPTMVADTEA----RVVSFGLDRDADIEATVLEARLDGQR----VRLDGHERDTQLAG 333 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A NM G + L + AL+ P GR + R T + Y Sbjct: 334 RFNASNMAAAYGTGTALGHAPEAVADALADAPPVPGRVEPLRFGDG----TTVIVDYAHT 389 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +++ + + +P V G G + ++ V ++ Sbjct: 390 PDALENVLRTVRDTTPAKAALWC-VFG----CGGDRDAGKRPTMGRIAERLADRVIVTSD 444 Query: 410 HV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + R + + + + GDVVV+ K Sbjct: 445 NPRTEAPVAILRDICDGVERPESMRWIVDREEAIQAAADETMPGDVVVIAGKG 497 >gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus AH820] gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus AH820] Length = 246 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 7/230 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58 M + L + I G ++G+ IDS+++ F I DGHD++ Sbjct: 1 MIQM-NLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDYVK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA + +P+ VDD L AL +LA R +I ITGS G Sbjct: 58 EAMDNGAVASLWKKSY--GTPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT K+++ L S + + G++N+ IG+PLT+ M D +F I E+GMS G Sbjct: 116 KTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGCRIIE 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 176 RFTWNSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 225 >gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter sp. TrichCH4B] gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter sp. TrichCH4B] Length = 494 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 146/476 (30%), Gaps = 41/476 (8%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P L G + + G+++DSR + F A+ G G F+ Sbjct: 1 MTERPALKLSQL-----GLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVD 55 Query: 59 HAVQKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + +GA ++ +T G + +D AL+ A + A+T Sbjct: 56 QVLDQGAVAILTDTAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFG 163 G+ GKT+ L + + + +G+ LA + + G Sbjct: 116 GTNGKTSVSTFLRMIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAG 175 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + S G + V+ A T HL E +AKA +F + Sbjct: 176 VTHAAMEASSHGLDQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSED 235 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + A + I + G+ D L + + + + Sbjct: 236 GVAVINMTDPKGAKMRAIAAARGQEIITVGR-GLGDIALMGMRVDATGQDIRFTWHDRPF 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + IG A+N+L+ G+ D L GR + N Sbjct: 295 AKRLNLIGGFQAENVLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGA-TVF 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + + + + PH GR +A++G G + L + N Sbjct: 354 VDYAHTPDAIAT-----AIKALRPHVLGRLVAIVGA----GGDRDATKRPLMGQAAHENA 404 Query: 402 SHVWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V ++ A++ A+ L L GD +++ Sbjct: 405 DTVIVTDDNPRSEDPAAIRAAVMGGAPDALNVGDRAEAILRGVDMLEPGDALLICG 460 >gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 487 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 97/472 (20%), Positives = 168/472 (35%), Gaps = 45/472 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T DL + + P + I++DSRS++P F A +G +DGHDF+ A+ + Sbjct: 1 MLTLRDLHGLVPSARLVGDPSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA ++V ++ +L IP V V A+ L R + ++ ITG+ GKTT Sbjct: 61 GAVALLVQHEV-----ALDIPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167 T + LS + IG+ G P + VD G+ + Sbjct: 116 TSYFIDSILSLAGRRTGLIGTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVM 175 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + I V T ++P HL IE+ +AKA++F + Sbjct: 176 EVSSHGIDQHRIDGTSFRIGVFTNLSPEHLDYHGTIEQYYAAKAQLFLPERTKQAVIGTD 235 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + L F + D + + + V + + Sbjct: 236 TEWGVRLATQVRIPAVTYGPAPFSDYRVEDVRYDE----YGTIFTVVVGGRRRWRLRVPI 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G H A N + + L + DT + L+ H GR ++ FT++ + Y Sbjct: 292 YGIHNAYNAAAAVAVAEALGIEGDTIERGLAECHQVAGR---FQRIDAGQPFTVVVD-YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P S++A I+ +SP GR I V G G + +L + ++ + + Sbjct: 348 HTPDSLRALIATARALSPK--GRVILVAGA---RGRRDRLKRPELGRAAATADV-AILTA 401 Query: 408 ----GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L + G + DVV++ Sbjct: 402 DNPGDEDPGEIVAQLLAGTLDVDHKQIIVELDRRGAIGHAIEIAEESDVVLI 453 >gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] Length = 489 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 157/475 (33%), Gaps = 46/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 + L I V G+ DSR + + F A+KG DG+ FI A+ GA Sbjct: 3 IDEALAGID-VLERGSGSADVTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGAR 61 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 +V ++ A ++P + V + AL +A + I A+TG+ GKTTT Sbjct: 62 AIVTDS-REAWAAGGAVPFYLVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTTTAF 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 +L L S+ + IG+ HIG + L + + E+ Sbjct: 121 LLEQMLKSVNRKCLLIGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVMEM- 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + +A+ T + HL +E AKA +FEG+ + Sbjct: 180 SSHALAQERVWGVP-VDVAMFTNLTQDHLDYHGTMERYFQAKARLFEGVGAEAPRVAVVN 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + LG + + +F+ K + ++ + ++++ Sbjct: 239 EDSPAGVWLLTRDLGPEVMSY--GINAGEFRASKVALSAGRTQFLWETPYGAVQIDSPLT 296 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L ++ KA R++ N T++ + + Sbjct: 297 GKVNVYNLLAASCAAMGRGLTLEEIAKAA---QGLHQVPGRFQTVPNDLGITVVVDYAHT 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A+ L ++ G+ + + G + V L+ Sbjct: 354 DD-----ALRNLIGLARELVGKGRVI--TLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTN 406 Query: 409 FHVL-----ALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + ++ GD+V++ K Sbjct: 407 DNPRTEEPGAILDEALAGVRETSVECVVEPDRATAIALAIKAVKGGDIVLLAGKG 461 >gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] Length = 505 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 84/482 (17%), Positives = 141/482 (29%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 HDLL + G V + DSR P F A++G H DGH ++ A +GA Sbjct: 4 LHDLLSDLFAELRGDDA-IMVTRVVYDSRQATPGSLFVALRGTHTDGHCYLADAASRGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 VV + L + V D AL +A +I +TG+ GKTTT Sbjct: 63 AAVVEEWPSQDVPGLR-TIARVSDTRVALAAIAARFYGHPASDLGLIGVTGTDGKTTTTF 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD------------------FGIFE 166 ++ L + IG+ IG + + + E Sbjct: 122 LIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLARMRATGVAWAVVE 181 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE---IFEGLEKTGTI 223 + G IAV+T + HL IE AK + Sbjct: 182 --ATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFVRDRPERAYP 239 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 ++ E ++ + G I + + A + + + ++ ++ +V Sbjct: 240 RGIVLNADDEGARSLARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRLRYGDQAADV 299 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G +N L G +L +D + L GR C Sbjct: 300 HLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDCGQPFRVIVDYA 359 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401 + + VL GR I V G E + + +A L+ + + Sbjct: 360 HTPKS-------FERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAIAARLAEFAVFT 412 Query: 402 ---------SHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 + ++A E GD+V++ Sbjct: 413 SEDPRHEDPDAIIA--EIAEGAREAGAQEGQQFVCVEDRALAIREAFRRARPGDIVLLLG 470 Query: 450 KS 451 K Sbjct: 471 KG 472 >gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] Length = 521 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 81/495 (16%), Positives = 149/495 (30%), Gaps = 58/495 (11%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN P T + ++G + +DSR + + F A+ G DG FI + Sbjct: 1 MNRPSLTLGQ---WLPELALGKAASLVPGSLCLDSRQVKQGDIFIALVGTRADGRQFIAN 57 Query: 60 AVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115 AV++GA V V + +PV ++ + L++LA ++ ITG Sbjct: 58 AVEQGAAAVFVEADKEWQGVHWIGEVPVIALEQLTARLSELAGRYYAHPSRELRLVGITG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------------- 154 + GKTT +L L+ + G+ + Sbjct: 118 TNGKTTCSLLLAQLLAGVSGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDP 177 Query: 155 -------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 R + +S + + A+ T + HL + Sbjct: 178 VALQRILRQLRTGGASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYG 237 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 AKAE+ + N DD++ + L AK+ A F + AD LR + Sbjct: 238 KAKAELLF-MPGLKHALFNMDDAWVKALAAKTPAGVSAIG--FSLQEPADVYLRDIHLHA 294 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + E +G N++ + I A ++ + + GR Sbjct: 295 SGASAWLVSPWGEAEFHSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAAPGRM 354 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + + ++ + + A + L I H R V G G Sbjct: 355 QPVVVDADVQEIQVLVDYAHTPDA----LENTLKAIREHQADRIWTVFG----CGGDRDK 406 Query: 388 FHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQ 438 L ++ +V ++ + + L F Sbjct: 407 TKRPLMGRIAEKLSDYVIVTNDNPRSEDPARIAADIVRGLNNPNGCLVLADRAQAIDFAV 466 Query: 439 SSLVDGDVVVV--KS 451 GD+V++ K Sbjct: 467 QQAKPGDLVLIAGKG 481 >gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] Length = 493 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 74/468 (15%), Positives = 148/468 (31%), Gaps = 39/468 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L +G G P ++G+++DSR + F A+ G G DFI +A++ GA Sbjct: 8 LSQLALTARG---GRDPD--ISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGAS 62 Query: 67 LVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 ++ + + A + + + V+D L A AT++A+TG+ GKT+ Sbjct: 63 AILTDAEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSV 122 Query: 123 KEMLTIALSSIKKT-----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGM 169 + + + + + V G+ + Sbjct: 123 STFVRQIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEA 182 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + V A T HL E +AKA +F + + + D Sbjct: 183 SSHGLEQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMD 242 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 A + + + G+ D L + + + +GK+ + Sbjct: 243 DPKGAEMRAIAAARGQNVLTVGR-GPCDLSLTNQRFDATGQDLLFSWRGKAYQARL---D 298 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 L ++ A + R + A + + Y+ Sbjct: 299 LIGGFQAENILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHT 358 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 P ++ A+ + PH GR +A++G G + L ++ N V ++ Sbjct: 359 PDAVATALRA---LRPHVMGRLVAIVGA----GGDRDPYKRPLMGKAAVENADIVIITDD 411 Query: 409 ----FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ + L +L GD +++ Sbjct: 412 NPRSEDPALIRAAVMQGAPGATEVGDRAEAILRGVDTLEPGDALLICG 459 >gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] Length = 492 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 153/479 (31%), Gaps = 47/479 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL + N IS+DSR+I + F A+ G DG FI A ++G Sbjct: 1 MRLSDLL----APWLHYSGPESFNNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQG 56 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGA-----LNKLAVAARL--RSKATIIAITGSV 117 A +V++D A G L + G VL L+ + A + +I +TG+ Sbjct: 57 AVAALVHSDDPAEHGRLKLEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLKLIGVTGTN 116 Query: 118 GKTTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 GKT+ +++ + + + G+ + Sbjct: 117 GKTSITQLMAQLVALLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGAD 176 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + + +S G I+ V +AV T ++ HL ++ AK +F+ + Sbjct: 177 LCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKFTSLQSGL 236 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D+ + L + A I + A Q + + ++ Sbjct: 237 INLDDEVGRQWLSEEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQAKL 296 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +GY N++ LG + ++ D+ ++ GR +R+ Sbjct: 297 ASPLLGYFNLSNLVAALGALYLIGYDMRAMAASVPQLKSVAGRMERFTTDNGVTLVVDYA 356 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A L + H EG+ + G G L + Sbjct: 357 HTPDA-------IEQALKALRGHCEGQLWCLFG----CGGDRDKGKRPLMAQAAEAYADK 405 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + L V + + + + GD++++ K Sbjct: 406 VMVTSDNARSESPEVIIEEILAGLDAPERVLTQVSREKAIRQVVALAKPGDLILLAGKG 464 >gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus succinogenes 130Z] gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus succinogenes 130Z] Length = 488 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 154/474 (32%), Gaps = 46/474 (9%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L A+ G + + + +DSRS+ F AIKG + DG FI A+++ A V+ Sbjct: 4 LTALLGLNSPELDGIRFTEMCLDSRSVKTGCLFVAIKGHNVDGRRFIPVAIERHAAAVLA 63 Query: 71 NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKE 124 D + + +IPV ++ L+++A +I +TG+ GKTT + Sbjct: 64 ECDNESEHLQVRFERNIPVISYFNLPEHLSEIADKFYDGPSQRLILTGVTGTNGKTTVSQ 123 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELG 168 +L + A +G+ N G+ L I + Sbjct: 124 LLAQWARILGNIPAVMGTVGN--GLLGQLQSAANTTGSAIEVQSSLARFIEQGADFAAIE 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G ++ ++ + T ++ HL + A AK +F L I D Sbjct: 182 VSSHGLVQKRIEALKFTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTALPSKYQIINADD 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L+ A+ + F + + + + ++ + I Sbjct: 242 EVGRTWLQELPRAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKFASSWGDGVLASRLI 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L+ L + L + T I+ +S GR + + + +A Sbjct: 302 GAFNVSNLLLVLATLLCLGYPLQTLIRTVSQLRGVCGRMEMLKAVHKPTVIVDYAHTPDA 361 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L H G+ + G G + + ++ V ++ Sbjct: 362 -------LEKALQAARTHCRGKLWCIFG----CGGERDNGKRPMMAQIAESLADRVIVTD 410 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + R +V + S + DV+++ K Sbjct: 411 DNPRTEDPEKIVADITAGFARLKNVQIIHAREAAICAAIQSAAENDVILIAGKG 464 >gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] Length = 494 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 153/472 (32%), Gaps = 42/472 (8%) Query: 6 TFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T DL L A G + V G+++DSR + F A+ G + G FI A+++G Sbjct: 7 TLSDLGLTASGGR------KADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERG 60 Query: 65 AGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 A ++ + + + V DD L A T+IA+TG+ GKT Sbjct: 61 ATAILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKT 120 Query: 121 TTKEMLTIALSSIKK-----------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE--L 167 + + + + G+ + Sbjct: 121 SVSTFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAM 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + VR A T HL E AK +F + + + Sbjct: 181 EASSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVN 240 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D A+ + G+S++AD QL + + +GK+ + Sbjct: 241 LDDPKGPEVAEIAYDLGIDVIGVGRSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNL 300 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N+L+ +V AD D L GR + N +D ++ Sbjct: 301 IGGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGA-AVFVDYAHT 359 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + + LS + PH GR IA++G G + L ++ V+++ Sbjct: 360 PDAVAT-----ALSAMRPHVMGRLIAIIGA----GGDRDATKRPLMGEAAMREADLVFVT 410 Query: 408 G-----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A + + L +L GD +++ K Sbjct: 411 DDNPRSEDPAVIRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKG 462 >gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] Length = 504 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 167/477 (35%), Gaps = 41/477 (8%) Query: 9 DLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++AI G + V G+ DSR + + F A+KG DG+ FI A+++GA Sbjct: 2 QWVEAISGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGA 61 Query: 66 GLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120 ++ ++ + P V V+ AL ++ AV R + A+TG+ GKT Sbjct: 62 AAIITDSAETFAALRERQPELAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------------DVDFGIFE-- 166 TT +L L S+ + +G+ HIG + + V G E Sbjct: 122 TTAFLLEQMLRSVGRKSVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVV 181 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + MS + + +A+ T + HL +E AKA IF G+ Sbjct: 182 MEMSSHALEQERVWGLPVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRVAV 241 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + E H T+ ++G + +++ + + + + Sbjct: 242 INLD-SEYGDEMCHEFRGATLMTYGMGEFGNYRAENVSLALGDTRFDFVTPEGRIAMHSP 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G +N+L ++ A + H GR + + GFF ++D ++ Sbjct: 301 LSGRVNVENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAH 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +++ I++ + GR I + G G + + V + Sbjct: 361 TDD--ALRNLIALARESVVGHGGRAITLFG----CGGDRDKTKRPKMGRAAGEDSDLVVV 414 Query: 407 SGFHVLA------LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + +AL E S GD+V++ K Sbjct: 415 TSDNPRSEEPMTIINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKG 471 >gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] Length = 485 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 77/458 (16%), Positives = 144/458 (31%), Gaps = 46/458 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V+GI +DSR +A + F A+ G DG D+I A+ GA ++ + + Sbjct: 15 PNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAILAEGSSLRYEENGG 74 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V L+++A AT+I +TG+ GKT+ + + T A I Sbjct: 75 AVCVFMPGVKEQLSEIAGRFFNHPSRHATLIGVTGTNGKTSVTHLAAQLAEKLGYTAAVI 134 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRP 184 G+ + G+ L + + +S ++ +R Sbjct: 135 GTTGS--GLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAMEVSSHALVQRRVEALRF 192 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV T I+ HL + AK +FE E + D L+ Sbjct: 193 DTAVATNISRDHLDYHGSMAHYVDAKRRLFEDFELNHRVINLDD----RYLRDWLEGASN 248 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 S A+ Q+ + + +G+ + +G N++ + I+ Sbjct: 249 GLSISLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFSTPLLGRFNVYNVVSAVAIML 308 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + P GR + ++ + + +A VL + Sbjct: 309 AQKQSLTAIAQHCRHLSPVPGRMEAFQAGSSALVVVDYAHTPDA-------LQQVLQALR 361 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 H +G+ V G G ++ V ++ + + Sbjct: 362 LHCKGKLWCVFG----CGGDRDRGKRPQMGQVAAEFADRVVVTDDNPRTEAPQQIIADIM 417 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + VH E L DVV++ K Sbjct: 418 AGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKG 455 >gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] Length = 489 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 72/456 (15%), Positives = 157/456 (34%), Gaps = 40/456 (8%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP + + DSR P FF +KG DGH+ I A+ GA ++V + + + Sbjct: 9 NVPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGAIVIVHSEPI--EKIN 66 Query: 81 LSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 I V DV+ N++A + T+ +TG+ GK++ ++ L+ I+ T Sbjct: 67 PDITYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRNILNQIEPTAY 126 Query: 139 CIGSYNNHIGV-------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + V + R VD S + + + Sbjct: 127 VGTISIEYNNVKLPPLVASPNIDEVHGILRDMVDAGIKNCAYEASSIAIDQGRLDAIDFD 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +A+ T + HL + +AK ++F+ L++ +N DD + + A Sbjct: 187 VAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQLKEEAIAIVNVDDPSGMKIVQDTQA---- 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++++G AD+++ + + + + + + + I N++ + + Sbjct: 243 KVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDHDYRLETNLIARFNIYNLVAAIAAIHQ 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 +D + + EGR +R + + + I + Q + Sbjct: 303 KGVSMDDIASYIQHLNQVEGRMERIQDGQPFNLIVDFAHTADG--------IEKVCQYAS 354 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPR 420 + ++ G+ + + + + + L+ G V + + + + Sbjct: 355 SITPKDCRIIAITGSAGKR-DTAKRPIFGEILDHYCDMIILTEDDSRGESVREIAEDIAK 413 Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 IH E +GD ++V K Sbjct: 414 GIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKG 449 >gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] Length = 457 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 78/454 (17%), Positives = 148/454 (32%), Gaps = 52/454 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V GI+ +S+ + F AI+G + DGH F+ A+++GA V V D+ + Sbjct: 2 EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIEDP----RI 57 Query: 86 FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D L +L R K +I +TG+ GKTTT +L + IG+ Sbjct: 58 VKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGLIGTI 117 Query: 144 NNHIGVPLTLAR--------MPVDVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAV 188 +G + + E +S + + + Sbjct: 118 YYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKFFTTI 177 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL +E SAK +F + ++ D + ++ K Sbjct: 178 FTNLSQDHLDYHGDMENYFSAKLLLFTQYPQEFSVINADDPYG-----KRIVSVVGKRAR 232 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++GK D ++ ++ E S +EV+ +GK H G A N+ + + Sbjct: 233 TYGK--EGDLRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILTAFLRGI 290 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D + + + ++D ++ + +L Sbjct: 291 DPQVVEEGVKDVRVPGRFETYRKDGKT----VIVDYAHTPDALE-----KLLRTARGITR 341 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419 GR + V G G L ++ + L+ + + + + Sbjct: 342 GRLLVVFGA----GGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGIS 397 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + +GDVVV+ K Sbjct: 398 QKNKVLVEPDREKAIRLAVEMAKEGDVVVIAGKG 431 >gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 488 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 71/485 (14%), Positives = 156/485 (32%), Gaps = 57/485 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + ++ S+++ AF IKG DGH++I A+++GA L++V+ S + Sbjct: 21 DEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYDTSKLKDKV 80 Query: 84 PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + AL+ ++ +I +TG+ GKT+T M+ L IG Sbjct: 81 LFIKTSNTRKALSVISANFFEHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHKVGLIG 140 Query: 142 SYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + N IG + M + + + +S + Sbjct: 141 TVKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVV-MEVSSHSLELHRVDCCDFDV 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V T + HL +E +AK ++F E + +N DD + + Sbjct: 200 GVFTNLTQDHLDFHGTMENYFAAKLKLF---EMSKKRVVNVDDEWGRKIIRIYPDS---- 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++G + AD K ++ Q + + ++ L S Sbjct: 253 -VTYGINSKADVCAMSVKLYVNKN-QFELRQLDNDNKEQVTLNIPGIFSVYNALAAASCA 310 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A + + R+ + FT++ + + ++++ + Sbjct: 311 YALGIDLKTIKAGLESVKAIPGRFEIVESNDKFTIVIDYAHTPDG----LLNLMKTVDEV 366 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDAL-- 418 +GR++ + G G + ++ V ++ + + ++D L Sbjct: 367 AKGRKVLLFG----CGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRTEDPIKIIEDILVG 422 Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS--------SNSCGFY--RLINLL 464 + + + + D +V+ K + F ++ + Sbjct: 423 LQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQILKDRTIHFDEREVVRSI 482 Query: 465 LEEFP 469 LEE Sbjct: 483 LEELK 487 >gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] Length = 485 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 155/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 NGI DSR I F A +G + DGHD+I AV+ GA ++V+ ++ ++ Sbjct: 18 DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 ++++ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134 Query: 142 SYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + +++ + E+ S ++ A Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEV--SSHSLELGRVDVIDFDCA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD++ + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNYGKRLYDEFIVDNPEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + + +++++ + + +V +G N L +GI + Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C + Y P ++ I I Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + + + L+ + +K Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITG 449 >gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D11] gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] Length = 485 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 155/453 (34%), Gaps = 46/453 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 NGI DSR I F A +G + DGHD+I AV+ GA ++V+ ++ ++ Sbjct: 18 DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKH---NV 74 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 ++++ L +A + K II +TG+ GKT++ M+ + I T Sbjct: 75 SYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134 Query: 142 SYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 Y V + +++ + E+ S ++ A Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEV--SSHSLELGRVDVIDFDCA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E AK ++F L+ +N DD++ + L + + I Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNYGKRLYDEFIVDNPEII 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + + +++++ + + +V +G N L +GI + Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ +K +S GR + C + Y P ++ I I Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R I + G G + + + L+ + +K Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +S + + + D++++ Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITG 449 >gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] Length = 500 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 91/485 (18%), Positives = 153/485 (31%), Gaps = 56/485 (11%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 DL+ A+ +G + V ++ DSR+ P F A++G DGH F+ A + Sbjct: 1 MRLQDLVSALLHVRVVGEISAVEVTDVTADSRTAGPGSLFIALRGHTVDGHAFVDEARRS 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA VV +P V D A LA +I +TG+ GKTT Sbjct: 61 GAVAAVVE-----DCLDTPLPQIVVPDTRRAAAVLAAVFFRHPSRAMRVIGVTGTNGKTT 115 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPV-DVDFGIF 165 ++ L + IG+ IG + A+M V + Sbjct: 116 VTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFAQMRDAGVSHAVM 175 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTG 221 E+ SH E+ + R H AV T + HL +E A + T Sbjct: 176 EV-SSHALELDRV-AGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFARLGNEYGDTR 233 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + ++G + AD + R+ + + +++G+ Sbjct: 234 ADQAFAVVNLDDPVGKWMARQTTAQTVTYGVDRPADLRAREVEVDTRGVRFVAEIEGRRT 293 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V G N L +G I D+D L+ GR +R G Sbjct: 294 RVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMERVDAGQPFGVVVD 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P S+ + L +++ GR I V G G L ++ Sbjct: 354 ----YAHTPDSLDNVLQALREVAS---GRLIVVFG----CGGDRDRTKRPLMGRIAYTRA 402 Query: 402 SHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 + L+ + L++ + + DVV+ Sbjct: 403 DYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDVVL 462 Query: 449 V--KS 451 + K Sbjct: 463 IAGKG 467 >gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] Length = 493 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 82/461 (17%), Positives = 151/461 (32%), Gaps = 36/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74 G + + GI++DSR + F A+ G G +FI +A++ GA V+ + + Sbjct: 12 GLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTDAEGA 71 Query: 75 ---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 ++ + + D AL + A AT+IA+TG+ GKT+ + Sbjct: 72 KIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVRQIWV 131 Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178 + + + + GI + S G + Sbjct: 132 EMGLPAVNLGTTGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGLDQRR 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL E +AKA +F + + D + A Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGIDIAA 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + G+ D L+ + + + +GK+ + + IG N+L+ Sbjct: 252 IARARGCEVITVGR-DGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDNVLL 310 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V AD L GR + N +D ++ + + Sbjct: 311 AAGLVIACGADAQEVFDTLPHLTTVRGRMQLAATRDNGA-AVFVDYAHTPDAVAT----- 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 LS + PH GR +A++G G L + N V ++ + Sbjct: 365 ALSAMRPHVMGRLVAIVGA----GGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPAS 420 Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A L + L +L GD +++ K Sbjct: 421 IRAAVLSGAPDAWEVGDRAEAILRGVDALEPGDALLIAGKG 461 >gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] Length = 463 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 80/453 (17%), Positives = 157/453 (34%), Gaps = 52/453 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V GI+ +S+ + F AIKG DGH+F+ A+ +GA V+V D+ G + Sbjct: 7 VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDV----GITDNRIV 62 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL +L A + K +I ITG+ GKTTT ++ L++ +G+ Sbjct: 63 KVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLVGTIY 122 Query: 145 NHIGVPLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVI 189 + + ++ +S + HI Sbjct: 123 YRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHFHIVGF 182 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL +EE AK + + + + + + Sbjct: 183 TNLSHDHLDYHKSMEEYFKAKLRL-----FKEYTYEYAVVNSDDEYGKRIVRELKGRAIT 237 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G+ DF++ + E S ++V +GK+ + + +G A N+ + + ++ + Sbjct: 238 YGR--EGDFKILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLVGIE 295 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 V + L R+ GF ++D ++ + +VL I G Sbjct: 296 VQAIEEGLKK----VYVPGRFETYRGDGFLVIVDYAHTPDALE-----NVLKSIRRLSTG 346 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPR 420 R I + G G + ++ + ++ + + + + Sbjct: 347 RVITLFGA----GGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKD 402 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E S +GD V++ K Sbjct: 403 TSKVLVEEDRKKAIKMAISLAEEGDTVLIAGKG 435 >gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] Length = 522 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 95/473 (20%), Positives = 164/473 (34%), Gaps = 46/473 (9%) Query: 8 HDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL + P + G++ DSR++ P F AI+G DGH FI AV GA Sbjct: 42 ADLLDETIAGAEAPDPDTLAIGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGAR 101 Query: 67 LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 LVV A + V D AL + A A + ++ +TG+ GKTT Sbjct: 102 LVVCEALPTRARERFPGVVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVA 161 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGM 169 ++ L ++ +T + + G V R VD + + Sbjct: 162 YLVHHLLEALGETAGLLSTIEVRAGGETTAPALTTPGPLVLHRTLRRMVDRGCTACAMEV 221 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + H + +A+ TT++ HL +++ +AK +F+ L T N DD Sbjct: 222 SSHALDQDRVHGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNTDD 281 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + A + A + SFG ++AD + + + ++ E G Sbjct: 282 EAGPTMVADTEA----RVVSFGLDRDADIEATVLEARLDGQR----VRLDGHERDTQLAG 333 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A NM G + L + AL+ P GR + R Y Sbjct: 334 RFNASNMAAAYGTGTALGHVPEAVADALADAPPVPGRVEPLRFEDGTTVIID----YAHT 389 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +++ + + +P V G G + ++ V ++ Sbjct: 390 PDALENVLRTVRDTTPAKAALWC-VFG----CGGDRDAGKRPTMGRIAERLADRVIVTSD 444 Query: 410 HV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++D + R + + + + GDVVV+ K Sbjct: 445 NPRTEAPVAILRDIRDGVERPESMRWIVDREEAIQAAADETMPGDVVVIAGKG 497 >gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] Length = 462 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 89/455 (19%), Positives = 152/455 (33%), Gaps = 48/455 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G++IDSR I F A++G DGH +I A+ KGA V+ + I Sbjct: 2 EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLCEE--LPEELKAGITY 59 Query: 86 FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSS----------- 132 V D A+ K+A SK +I +TG+ GKTT +L Sbjct: 60 IQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGLVSTV 119 Query: 133 IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + P+TL R+ D + +S + ++ + Sbjct: 120 CNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIF 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E AK + F+ L K N DD ++ + + +Y+ Sbjct: 180 TNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDKNGLVMTQNTRS----KVYT 235 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + +DF+ + + E + L + E+ IG A N+L G +L Sbjct: 236 YSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFIGKFNAYNLLAVFGTAVLLGKK 291 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + ALS HP GR R Y P ++ ++ + + G+G Sbjct: 292 EEDVLVALSTLHPVTGRFDAIRSPKGYTAIVD----YAHTPDALVNVLNAIHGV-LEGKG 346 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + I V+G G + S V ++ + + L + Sbjct: 347 KVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLAGLDK 402 Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 GDV++V K Sbjct: 403 DDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 437 >gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter litoralis Och 149] gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter litoralis Och 149] Length = 493 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 79/471 (16%), Positives = 150/471 (31%), Gaps = 41/471 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L G + Q + G+++DSR + F A+ G G +FI +A++ GA Sbjct: 7 TLSQL-----GLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGA 61 Query: 66 GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ + +G+ + DD AL + A T+IA+TG+ GKT+ Sbjct: 62 SAILTDIVGARLAATELGASDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTS 121 Query: 122 TKEMLTIALSSIKKT-----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LG 168 + + + + + G+ + Sbjct: 122 VATFVRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAME 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V A T HL + E+ +AKA +F + + Sbjct: 182 ASSHGLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINI 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + A + + G+ + D L + + + GK I Sbjct: 242 DVDRGVDMAAIAKARNCPVITVGR-DSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLI 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A+N+++ +V + L GR + N +D ++ Sbjct: 301 GGFQAENVMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGA-TVFVDYAHTP 359 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + L + PH GR IA++G G + L + N V+++ Sbjct: 360 DAIAT-----ALKALRPHVVGRLIAIVGA----GGDRDATKRPLMGQAAAENADVVFVTD 410 Query: 409 FHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + L +L GD +++ K Sbjct: 411 DNPRSEDPATIRAAVLLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKG 461 >gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] Length = 487 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 93/466 (19%), Positives = 155/466 (33%), Gaps = 32/466 (6%) Query: 5 WTFHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +++ + G + GI +DSR + F AIKG DGH FI AV+ Sbjct: 1 MKLSQVIKCLKDSGEMDVFTNDPEIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 GA VV + L++P V D +L KLA R K II ITG+ GKT Sbjct: 61 NGAAAVVGEEAL-----ELNVPYIKVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKT 115 Query: 121 TTKEMLTIALSSIKKTY-----------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 TT +L L + +T +N L + +M + + Sbjct: 116 TTAYILKHILETAGRTCSLLGTVSNIINNREYKTSNTTPDALQIQKMLSKSLDEFVVMEI 175 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + T + + T +A HL +++ K +IF L+ G +N + Sbjct: 176 SSHALEQSRTEGLELDYGLFTNLAHDHLDYHENMDQYFLDKKKIFTLLKDGGKGVINLYN 235 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 S+ E + I I + K + ++ ++++G+S E+ G Sbjct: 236 SWGEKMAEDLQKEKIPLI----LLGDDQCCSIKDVAINGRTVFILEMKGQSFEIEFPLPG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +H N M L D IKAL+ F GR + F + +A Sbjct: 292 HHNVYNAAMAFLTGVDLGIDTADIIKALAGFPGIPGRFETIIHPSGAKFVVDYAHTVDAF 351 Query: 350 PA----SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + + QI GR + DM + A+ L+ + + Sbjct: 352 EYCLEAARQQGAERIFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTADDLNDESEDEMI 411 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + L + D + + Sbjct: 412 ---SQLHRLNKEFGCGK-GEVIPDRTLAIQKAWREAGESDWIFITG 453 >gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis CI] gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus biovar anthracis str. CI] Length = 250 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 8 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHEYVKEAMD 65 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 66 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D + I E+GMS G Sbjct: 124 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 183 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 184 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 229 >gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 488 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 82/466 (17%), Positives = 152/466 (32%), Gaps = 46/466 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I I + +++DSR+ F AIKG DG +I A++ GA V+ D Sbjct: 10 IDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQH 69 Query: 79 GSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132 + IP+ + L++LA T++ +TG+ GKTTT ++L Sbjct: 70 LQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQL 129 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIR 176 + T A +G+ N G+ + + + +S G ++ Sbjct: 130 LGHTGAVMGTIGN--GLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQ 187 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 V AV T ++ HL +E A+AK +F L+ I D L Sbjct: 188 HRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQIIDADDPVGAVWLA 247 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 HA+ + F + + + + + ++ + + E+ IG N+ Sbjct: 248 EMPHAVAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNL 307 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ + L + I ++ GR + + +A Sbjct: 308 LLVTATLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQKPTVIVDYAHTPDA-------L 360 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410 L H G+ + G G S L ++ HV + + Sbjct: 361 EKALQAARLHCRGKLWCIFG----CGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEP 416 Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V S V+ DV+++ K Sbjct: 417 KKIMADILNGFVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKG 462 >gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] Length = 513 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 94/484 (19%), Positives = 150/484 (30%), Gaps = 55/484 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL+QA+ S G V + DSR P F A++G + DGH F+ A +GA Sbjct: 7 SDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAVA 66 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125 +V + V + AL +A R II ITG+ GKTTT + Sbjct: 67 ALVESWEPDLANYP--AYAAVPNTRAALPLVAATFFGRPAEALGIIGITGTDGKTTTSYL 124 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------------DFGIFEL 167 + L S IG+ +G + D+ + E Sbjct: 125 VDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWAVLE- 183 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTI 223 + G + V+T I HL IEE A + + Sbjct: 184 -ATSHGLALHRLDECAFDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAGRGPRPYPG 242 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + A ++ K AD Q + ++ + + S+ V Sbjct: 243 GVVLNRDDEGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRLTTPRGSVPV 302 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + IG + N L G+ +L + + L GR R +T+I Sbjct: 303 RLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGR---MRRVDLGQPYTVIV 359 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + Y P S++ ++ +L + P GR IAV G E L +S Sbjct: 360 D-YAHTPDSLEKSLRLLRSLVP---GRVIAVFGSAGE----RDRAKRPLQGAVSARLADF 411 Query: 404 VWLSGFHVL-------------ALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV 449 + +DA + E GD V++ Sbjct: 412 SVFTSEDPRFEDPDAIIAEIAAGARDAGAVEGRDYVCIEDRRAAIRAALDWARPGDGVLL 471 Query: 450 --KS 451 K Sbjct: 472 AGKG 475 >gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] Length = 484 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ I + I ++GI++DSR I P F A+KG DGH +I A++KG Sbjct: 1 MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV + ++ V+D + KLA SK ++ +TG+ GKTT Sbjct: 61 ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168 +L I + N P + D + Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK F+ L KT N D Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++++ +DF+ + + E + L ++EV I Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R + +A Sbjct: 291 GRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G I V+G G L ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGNVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DV++V K Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457 >gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D4] gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides dorei 5_1_36/D4] Length = 484 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ I + I ++GI++DSR I P F A+KG DGH +I A++KG Sbjct: 1 MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV + ++ V+D + KLA SK ++ +TG+ GKTT Sbjct: 61 ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168 +L I + N P + D + Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK F+ L KT N D Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++++ +DF+ + + E + L ++EV I Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R + +A Sbjct: 291 GRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G I V+G G L ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGNVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DV++V K Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457 >gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 498 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 148/475 (31%), Gaps = 46/475 (9%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++LQ+++ S G + + GI+ DSR P F A++G DGHD+IL AV GA V Sbjct: 5 EILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAVAV 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEML 126 ++ DM+ I V D AL L+ +I +TG+ GKTTT ++ Sbjct: 65 ILQKDMILPDY---IAWARVPDSRKALALLSARFYNYPSRRLKMIGVTGTNGKTTTAHLI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR--------------MPVDVDFGIFELGMSHL 172 + IG+ N IG + + + + + +S Sbjct: 122 ESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVAMEVSSH 181 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDS 230 IAV T + HL +E+ A + + + Sbjct: 182 ALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGAKYAIIN 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + A+ L + ++G K AD ++ + V + + + + G Sbjct: 242 ADDEAAARLTRLSGGQVITYGMVKKADIIAENITVRADGASFTVASRQGKVTINLNLTGK 301 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L + + AL GR + + + + Sbjct: 302 FNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELVDEGQDFAVIVDYAHTPDG-- 359 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++L+ G+ I V G G L +S ++ + Sbjct: 360 -----LRNILNTAREFTAGKLINVFG----CGGDRDRTKRPLMGEISGRLSDFTIVTSDN 410 Query: 411 VLA------LKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L V + GDVV++ K Sbjct: 411 PRREDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIAGKG 465 >gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 492 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAVINVDDEYGAELVGRLKKDCPDLVVYSYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++G + + D LP + E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464 >gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] Length = 504 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 71/480 (14%), Positives = 142/480 (29%), Gaps = 45/480 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + I + ++G+S DSR+ + +FA+ G H DGH F+ A+ GA Sbjct: 4 SLSAITGDINIEARNGKTDALISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123 V+ + S+ I V + +++ +A A +I +TG+ GK++T Sbjct: 64 RAVI--HQVPLSLYHPEIAYLQVTNSRISMSPVAAAFYDHPSRVLKVIGVTGTDGKSSTV 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD------------------FGIF 165 L L+ + + + + G + Sbjct: 122 SFLHQLLTGMGLKCGFLSTVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAGCSHAVI 181 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E L + AVIT I+ HL +E+ KA +F + I + Sbjct: 182 ESTSHGLSPKNNRLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIAV 241 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D L A + + + + + + S K V Sbjct: 242 INIDDKNHNLFAGTASGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPKGEARVD 301 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + ++ + + +F + R F +I + Sbjct: 302 LNVAGRFNVDNILAASAA-VCELEGVEPKTLEPLFPGLKAVKGRMVPVDEGQAFQVIVDY 360 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + A + I P GR A+ E + ++ + Sbjct: 361 AHTPGA----FRRLFPAIRPLVRGRLFALFSSAGE----RDLEKRPVLGSIADEYCDVIV 412 Query: 406 LS-----GFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ G + +AL + + + E S + D +++ K Sbjct: 413 LADEDPRGENPMALLEEVASGCRNKTKGKSLFLIENRKEAMRHAFSMMKKDDCILLLGKG 472 >gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] Length = 493 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 80/461 (17%), Positives = 149/461 (32%), Gaps = 36/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + G+++DSR + F A+ G G +FI +A++ GA V+ + Sbjct: 12 GLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTDATGA 71 Query: 76 ASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 A L + V D AL + A AT+IA+TG+ GKT+ + Sbjct: 72 AMAADLMASAGVAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVRQIWI 131 Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178 + + + + GI + S G + Sbjct: 132 EMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGLDQRR 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL + + AKA +F + + D + A Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGIDMAA 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + S G+ D L + + + +GK+ + + IG A N+L+ Sbjct: 252 IARARGCEVLSVGR-DGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADNVLL 310 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V A + GR + N G +D ++ + S Sbjct: 311 ACGLVIACGAKPADVFDTIPHLTTVRGRMQLAATRDN-GGAVFVDYAHTPDAIST----- 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 L + PH GR +A++G G + L + + V+++ + + Sbjct: 365 ALKAMRPHVMGRLVAIVGA----GGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPAT 420 Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L ++ GD +++ K Sbjct: 421 IRAAVIAGAPDATEVGDRAEAILRGIDAIGPGDALLIAGKG 461 >gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter fumaroxidans MPOB] gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobacter fumaroxidans MPOB] Length = 504 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 78/489 (15%), Positives = 141/489 (28%), Gaps = 64/489 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+ ++ V GI+ DSR I F A+ G DG+ FI AV+ GA Sbjct: 5 LNNLLRDVEILQTAGPLDVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGAS 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAIT---------- 114 V+ T + V V D A+ ++A +I +T Sbjct: 65 AVITETVGFSECP---ATVVRVSDSRKAMARMAANYYGHPCAGLKMIGVTGTNGKTTTTL 121 Query: 115 --------GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 G + + K + G+ + V + E Sbjct: 122 LLESILKRGGHSVGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMRE--DGVTHVVME 179 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFL 225 + SH + AV T ++ HL +E+ A+ E L + Sbjct: 180 V-SSHALAQGRVAECA-FDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVI 237 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + L K G S+ A ++ + + + SM++ Sbjct: 238 NGDDPYGARLVEK---AGPGAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGSMDIHS 294 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 IG N+L + + + ++ +GR +R GF ++D + Sbjct: 295 PLIGRLNLYNILAAVTASLAMGVPEAAIREGVAGLTSVDGRLQRVASPGT-GFEVVVDYA 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + L + GR + V G G L ++ V Sbjct: 354 HTPDAME-----KSLGCLREMTAGRLLVVFG----CGGDRDRGKRPLMGKVAGALGDLVI 404 Query: 406 LSGFHVLA----------------------LKDALPRSIHVHYSE-TMDGLFLFIQSSLV 442 ++ + + L + E + Sbjct: 405 VTSDNPRSEVPERIIDEIEPGVRASGLERILAAEPGNGARGYIVEVDRKSAIEKALAWAR 464 Query: 443 DGDVVVVKS 451 GD V + Sbjct: 465 PGDTVFIGG 473 >gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] Length = 1035 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 97/232 (41%), Gaps = 30/232 (12%) Query: 7 FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++ A G + + ID R +AP + + AI+G +DGH F A GA Sbjct: 500 LAEMAAAAGGVLHAPEGCAEAASRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGA 559 Query: 66 GLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------------- 107 ++V A+ +L + V VDD AL +A R R Sbjct: 560 CALMVERGRAPRDAAGNALKLAVIEVDDTRLALGSVARWHRARWGELPVYGCPNTGGDRD 619 Query: 108 -----------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 ++ ITGS GKTTTKE++ ALS+ +A S+NN GVPLTL + Sbjct: 620 GDNGDERARAAKPVVGITGSAGKTTTKELIAAALSARYAVHATRASFNNETGVPLTLLAL 679 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + E+GM LG+I +L L P +A + AH+ E I Sbjct: 680 MPHHGAAVIEMGMRGLGQIAYLAELSAPTVAAVLNAGTAHIGVVGSAEGIVR 731 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 77/479 (16%), Positives = 147/479 (30%), Gaps = 39/479 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M DL + +G + + DSR + P + F A++G DGH ++ Sbjct: 1 MKLATLIQDLAELAAVRVVGDDA-RDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYLPAV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 + GA VVV + + + V + AL LA R + ++ ITG+ G Sbjct: 60 IDAGAAAVVVERAIEDPALAARVTQVIVPEGARALGVLAARMAGRPGERMRLVGITGTNG 119 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-------------RMPVDVDF 162 KTT ++ L + T IG+ + G VP + Sbjct: 120 KTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPYTTPTALILQEALGEMVAASCTH 179 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTG 221 + E+ S +A T HL ++ A+ + + L + G Sbjct: 180 AVLEV--SSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKERLFRDHLAENG 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 ++ DD + A + + + + + AD ++R + + + + Sbjct: 238 VAVIDVDDKAAPHMIAAAGERRVVRVSARPGATAADAEVRVLAAETTIAGITAEFATPRG 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 N+ V++ A G R N + Sbjct: 298 SFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPGRVERVANDAGLDI 357 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + A SVL+ + P + R + V G G + + Sbjct: 358 LVDYAHTPDA----LASVLAALRPLTQRRLLCVFG----CGGDRDADKRPKMGAAAAAGA 409 Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ A+ D + + + V GD+V++ K Sbjct: 410 DLVVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVLIAGKG 468 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%) Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++ + YNANPASM+AA++ L++++ R +AVLGDM E+G+ + H ++ ++ Sbjct: 897 RVLVDCYNANPASMRAALATLTELARADGSRALAVLGDMLELGDEAARAHAEVGQMAGDL 956 Query: 400 NISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 ++ V G H AL A + + D F+ S GD V+VK S Sbjct: 957 DV-AVIALGEHAAALAGAGAPGDDLARVAASPDEAAAFLLSHTAPGDWVLVKGSRGMRLE 1015 Query: 459 RLINL 463 R+I+ Sbjct: 1016 RVIDA 1020 >gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] Length = 506 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 152/493 (30%), Gaps = 66/493 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L +++ +G + G+ DSR + FFA+KG DG+ F+ A++ GA Sbjct: 3 LSELTKSVMPLEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 VVV+ ++ IP V D A++++A A ++ ITG+ GKTT Sbjct: 63 AVVVD----GTLTPQGIPWVRVADARLAMSRMAAAFYGFPTATLPLVGITGTNGKTTITY 118 Query: 125 MLTIA-----LSSIKKTYACIGSYNNHIGVPLTLAR-----------MPVDVDFGIFELG 168 ++ + + I P T + + + E+ Sbjct: 119 LIESILEKSGIPAAVLGTVNYRFREKAIPAPNTTPESVDLQRTLRELIDMGAKGVVMEV- 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLN 226 SH + R + + V T + HL +E +K +F Sbjct: 178 SSHALQQRRVDGCC-FDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSELLAADRIKPKRC 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + S+G S NA + + + + + Sbjct: 237 AVVNIDDPYGPRIVQGAACPVLSYGISGNAHVRAERVVFSVAGISCVLVTPQGQINLHSE 296 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + +D + L GR N T++ + Sbjct: 297 LLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGR---VERVANDRGLTILVDYA 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL ++ +GR I V G G + ++ + Sbjct: 354 HTGDA----LENVLRTLTELKKGRIITVFG----CGGDRDRGKRPVMGEIAGRYSDLSII 405 Query: 407 SGFH--------------------------VLALKDALPRSIHVHYSETMDGLFLFIQSS 440 + + L+ + E+ ++ Sbjct: 406 TSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYA-AVESRREAIRLAVAA 464 Query: 441 LVDGDVVVV--KS 451 GD+V++ K Sbjct: 465 ARPGDIVLLAGKG 477 >gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] Length = 495 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 84/487 (17%), Positives = 154/487 (31%), Gaps = 57/487 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 LW + + + + +DSR F AIKG DG +FI+ A+ Sbjct: 5 TALWDIDE-------QLDSVHRDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAI 57 Query: 62 QKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115 Q GA V+ TD+V +IP+ ++ L+ +A T++ +TG Sbjct: 58 QNGASAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165 + GKTT ++L + T A +G+ N G+ + I Sbjct: 118 TNGKTTIAQLLAQWTQILGHTSAVMGTIGN--GLFGQIKEASNTTGSAIEIQSSLDKFIR 175 Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +S G ++ + + T ++ HL +E A AK +F L Sbjct: 176 QGADFAAIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNC 235 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQ 275 I D+ L S S D + S+ + +E Sbjct: 236 QHKILNVDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFA 295 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 + + IG N+L+ L + L D+ + + GR + Sbjct: 296 SSWGNGILSSPLIGGFNVSNLLLVLATLLSLGYDIGKLLATVRQLTGVCGRMEMLSAKHK 355 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +A + L + H +G+ + G G L Sbjct: 356 ATVIVDYAHTPDA-------LENALQSAAVHCQGKLWCIFG----CGGDRDRGKRPLMAA 404 Query: 396 LSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 ++ V ++ + + + +S V + S V+ DV Sbjct: 405 IAEKFADSVIVTDDNPRTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDV 464 Query: 447 VVV--KS 451 V++ K Sbjct: 465 VLIAGKG 471 >gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] Length = 495 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 89/481 (18%), Positives = 144/481 (29%), Gaps = 48/481 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L + G I P + + DSR I P F I G H D H FI + + Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+ + V I V V D+ AL+ + ++ ITG+ GKTT Sbjct: 62 GARAVLTQRENVD--VPAGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTT 119 Query: 122 TKEMLTIALSSI-------------KKTYACIGSYNNHIGVPLTLARMPV---DVDFGIF 165 T ++ L + + S V + + +D + Sbjct: 120 TSYLVRAILRAAGRRVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVM 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ L + R AV T + HL +E A AKA +FE + G Sbjct: 180 EVSSHALDQGRVAGI--EFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAG 237 Query: 226 NYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + A A + S+G ++ A R + + M + + + Sbjct: 238 KTAVINADDAAGAVMRAHTTCPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALT 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H G N+L G D AL F GR + R + Sbjct: 298 LHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAH 357 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + +VL GR I V G G + + V Sbjct: 358 TPDG-------MENVLRTARAVTRGRIIVVFG----CGGDRDRTKRPIMGRIGAEMADVV 406 Query: 405 WLSG-----FHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVK 450 +++ A+ D + + GD V++ K Sbjct: 407 YITSDNPRTEDPAAILDEVEAGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704] gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704] Length = 504 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 91/490 (18%), Positives = 156/490 (31%), Gaps = 63/490 (12%) Query: 1 MNPL----WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M L LL+ ++ + V + DSR + F I G DGH + Sbjct: 9 MKSLGGFFMKLTQLLERLEYEVRQGSDEVEVTQLINDSRKVTEGSVFVCISGAVSDGHKY 68 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAIT 114 I KGA V+V + A + V VDD AL ++ A K +I IT Sbjct: 69 IDDVAAKGAAAVIVERPVDA---PKGLTVIRVDDTRYALALMSAAYFGYPAEKLKVIGIT 125 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPV 158 G+ GKTTT M+ L + IG+ IG Sbjct: 126 GTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQMAEA 185 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEG 216 D + E+ S G + T ++ I + T + H+ E+ K + Sbjct: 186 GCDSVVMEV--SSQGLMLHRTAGIQFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGIL--- 240 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 T + + + +FG S+ AD + + S ++ V+ Sbjct: 241 ----FTQCNLGIANVDDRWYEDVFKNATCKVETFGFSEKADLRATDVQHISRPGYLGVKY 296 Query: 277 QG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 Q + +V G N L + + V+ AL R Sbjct: 297 QVSGLMNFDVEIDIPGDFSVYNSLTAIAVCRHFDVPVENIKTALK----VAKVKGRIEMV 352 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 FTL+ + Y N S+++ + L P ++ G S++ ++ Sbjct: 353 KVSDDFTLMID-YAHNAMSLESLLLTLRDYHPQR------IVTVFGCGGNRSKTRRYEMG 405 Query: 394 EVLSLYNISHVWLSG----FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVD 443 EV + V S A+ D + ++ ++ + Sbjct: 406 EVAGRLSDFTVITSDNPRFEEPQAIIDDIIVGMKKTDGKYISIC-DRKEAIKYVIENGQP 464 Query: 444 GDVVVV--KS 451 GDV+++ K Sbjct: 465 GDVIILAGKG 474 >gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te ligase mure [Rhodococcus equi 103S] gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 501 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 75/480 (15%), Positives = 139/480 (28%), Gaps = 52/480 (10%) Query: 6 TFHDLLQAI--QGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T +++ + GH + P + + G+ DSR + P + + A+ G + G DF A Sbjct: 14 TLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEA 73 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 +GA ++ + S +P VDD AL LA A + +TG+ G Sbjct: 74 SARGAVAMLSDRP------SDIVPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNG 127 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE---- 166 KT+T +L AL + + + + E Sbjct: 128 KTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPEACELQQSFVEFVEEGVDA 187 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S G R + V T +A HL +E G + Sbjct: 188 VAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY-TAKARLFGRDLCERAA 246 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + DD + L + + + + + AD + S + +G+ + V Sbjct: 247 VCIDDDYGRRLAGE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVR 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + ++ L+ A++ + R F + + Sbjct: 304 LRV---LGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLERVDVGQPFLALVD 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + + GR + VLG GE L + Y V Sbjct: 361 YVHNTAG----QHRLFPYLRSVTPGRIVVVLGA---TGERDPGKRAPLGFTAARYAEVVV 413 Query: 405 WL----SGFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L+D + V GD V++ Sbjct: 414 VTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTVLLAG-RG 472 >gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia montanensis] Length = 479 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 80/457 (17%), Positives = 154/457 (33%), Gaps = 52/457 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G+SI+S+++ ++ FFAIKG + DG+ FI A+ KGA LV+ + I V Sbjct: 13 KVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKKNIVID----KV 68 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI--------------ALS 131 V DV AL++ + +IA+TG+ GK++ + Sbjct: 69 IYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTHSLLGKKAASIGTIGV 128 Query: 132 SIKKTYACIGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 I I + R +++ +FE S G + ++ + Sbjct: 129 EIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVN 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA T+ + HL E AK ++F I + D Sbjct: 187 IACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNI 246 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + GK + + + + + IG A N+L+ + + Sbjct: 247 KFITVGKKGDLEITRINCSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSMHY 304 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 D I +L +GR + T I Y P +++ A++ L I Sbjct: 305 TGFAFDDVIDSLVEVKAVKGRM-------ERIDNTNIFVDYAHTPDALEKALTELKNIKL 357 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 H + + V G G L ++ + ++ + + Sbjct: 358 H-DSKLSVVFG----CGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLIRAEIIS 412 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + + ++L D+++V K Sbjct: 413 GIEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448 >gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] Length = 485 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 92/479 (19%), Positives = 156/479 (32%), Gaps = 50/479 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L DLL+ + + G++ DSR +AP F A+ G DG FI A Sbjct: 1 MSALH-LSDLLR------RDVASDPIITGVTSDSRKVAPGALFVALPGTAADGRAFIPQA 53 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGK 119 + +GA V+ + PV DV A A T +A+TG+ GK Sbjct: 54 LAQGAAAVLA----PTDTPDSAAPVLVTSGDVRRAYAIAARGFYGAQPRTCVAVTGTNGK 109 Query: 120 TTTKEMLTIALSSIKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167 T+ + + G + P + + + EL Sbjct: 110 TSVAAFCRQIWAGLGHKSASMGTLGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAK 169 Query: 168 -------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 S G + V A T + HL +++ +AK +FE L Sbjct: 170 DVTHVAVEASSHGIDQRRLDGVALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPR 229 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G + DS A + + + G+ + D L + E + + ++G Sbjct: 230 GRTAVLNADSDAYSAFAAASIMAGLGVMGVGE-RGRDLALIGRQATPEGQRLTLDVRGDV 288 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +++ G A N L+ G+ D I AL +GR +R +G Sbjct: 289 RDILLPLAGAFQASNALVAAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRG-EV 347 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +D ++ + VL+ + PH GR I V G G L ++ Sbjct: 348 YVDYAHTPDGLET-----VLTALRPHATGRLIVVFGA----GGDRDRGKRPLMGEIAGRL 398 Query: 401 ISHVWLSG-----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ +++ + + DGDVVV+ K Sbjct: 399 ADVAIVTDDNPRSEDPASIRAQVRAGCPEALEIGDRRAAIEAAIEMMRDGDVVVIAGKG 457 >gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 82/461 (17%), Positives = 154/461 (33%), Gaps = 46/461 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V + +DSR + + F A+KG +D F+ ++ GA VV+ TD+ S+ Sbjct: 15 DINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSIQW 74 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 ++PV + L+ LA K T++ +TG+ GKTT ++L + Sbjct: 75 QNNVPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGHKA 134 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF---------ELGM-------SHLGEIRFLTHL 181 A +G+ N G+ + + E G S G ++ Sbjct: 135 AVMGTIGN--GLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEA 192 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 ++ A+ T ++ HL +E+ A AK F L I D L + Sbjct: 193 LKFKAAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQILNADDPIGAAWLSELPNG 252 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + F + + E + ++V + + IG N+L+ Sbjct: 253 IAVSCRPDFQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNLLLATA 312 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ L D I+ +S GR + + A + +A L+ Sbjct: 313 VLLALGYSFDELIRTVSQLKGVNGRMELIKKAGKPTVIVDYAHTPDA-------LEKALN 365 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 H +G+ + G G + L + V ++ + Sbjct: 366 AAREHCKGKLWCIFG----CGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEA 421 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + R V + F + V+ DV+V+ K Sbjct: 422 DILTGFSRMEDVGVIPDREEAIKFTIENAVENDVIVIAGKG 462 >gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 501 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 80/480 (16%), Positives = 145/480 (30%), Gaps = 52/480 (10%) Query: 6 TFHDLLQAI--QGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T +++ + GH + P + + G+ DSR + P + + A+ G + G DF A Sbjct: 14 TLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEA 73 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 +GA ++ + S +P VDD AL LA A + +TG+ G Sbjct: 74 TARGAVAMLSDRP------SDIVPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNG 127 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE---- 166 KT+T +L AL + + + + E Sbjct: 128 KTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPEACELQQSFVEFVEEGVDA 187 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S G R + V T +A HL +E +AKA +FE Sbjct: 188 VAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYYAAKARLFERDL-CERAA 246 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + DD + L A+ + + + + AD + S + +G+ + V Sbjct: 247 VCIDDDYGRRLAAE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVR 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + ++ L+ A++ + R F + + Sbjct: 304 LRV---LGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLERVDVGQPFLALVD 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + + GR + VLG GE L + Y V Sbjct: 361 YVHNTAG----QHRLFPYLRSVTPGRIVVVLGA---TGERDPGKRAPLGFTAARYAEVVV 413 Query: 405 WL----SGFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L+D + V GD V++ Sbjct: 414 VTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTVLLAG-RG 472 >gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] Length = 500 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 97/477 (20%), Positives = 168/477 (35%), Gaps = 50/477 (10%) Query: 10 LLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LLQ + G+ + + I +S ++ + F A KG +DGHDFIL A KGA Sbjct: 8 LLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGAS 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124 L++ + S+ V+D+ A L+ I+ +TG+ GK+TT Sbjct: 68 LIIAQDEEKIPTND-SLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNGKSTTVS 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-----------------L 167 ++ L K I + I + + P + I E + Sbjct: 127 LVHHILQKSDKDSTLISTVEIKI--KDEVVKEPYNTTPSILELSKILKNSKENNIEFINM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + V+ I T I HL EE S K + L+ G I + Sbjct: 185 EVSSHAIHQRRIEGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDEGKIVI-- 242 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286 + L K + ++G KNADF + ++Q +Q ++ + E+ H Sbjct: 243 ---NLDRLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHKSYEIRSH 299 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+ I ++ + + I ++S F GR + + + GFF +ID ++ Sbjct: 300 LIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDFAH 359 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + VL S EGR I V G G + L + + + L Sbjct: 360 TPDA-----LNEVLKTASSITEGRIITVFGA----GGNADKGKRKLMGQVVSEHSDVIVL 410 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + + H + GD+V++ Sbjct: 411 TNDDPKDEDPDQIIEDVSKGIDQDKHFIVIPDRETAIDTALRFANKGDIVIIAG-RG 466 >gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] Length = 493 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 93/473 (19%), Positives = 163/473 (34%), Gaps = 44/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL A+ I + V I +DSRS+ P F IKG DGHD+ AV GA Sbjct: 8 AEELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 +VV ++ +I V D A+ LA T+I +TG+ GKT+ Sbjct: 68 IVVTERELP---LGETIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 124 Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFELGM----------S 170 ++ + + + A N G+ A D IF M S Sbjct: 125 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 184 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G V IA+ T + HL +EE AK +F L + + Sbjct: 185 SHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLN 244 Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + A+ ++++G K++ ADF+ + + +V++ V + +G Sbjct: 245 ADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L + ++ I+ + P +GR ++ L F + +A Sbjct: 305 EFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSDLPVQMFVDYAHTPDA- 363 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + P+ +G+ I ++G G +S +AE S +V L+ Sbjct: 364 ------IEKAIEAAQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKASAA--EYVILTTD 412 Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + GD+++ K Sbjct: 413 DPRYEDYNSITGDLAKGML-HDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKG 464 >gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] Length = 488 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 157/476 (32%), Gaps = 46/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L + + I V + DSR A AF A+KG DGH FI A+ Sbjct: 1 MKNLKDILYKVSANKIFGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLFIDKAINL 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +VV + V D AL +A K +I +TG+ GKTT Sbjct: 61 GAIVVVCED--FPKEQKEGVTYIQVSDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKT--------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +L + +D + Sbjct: 119 VASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + V T ++ HL + K F+ L K+ + N Sbjct: 179 EVSSHGIHQKRTEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDTLPKSAFVLANI 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + S A+ ++ AD++++ ++ + + + ++++ Sbjct: 239 DDKNGRFMLQNSKAIKK----TYALKTAADYKVKILEKQLSGTLIALDGTEVWIKLIGVF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 Y++ + + ++ L++ E R+ ++Q T I + Y Sbjct: 295 NIYNVTAVIATAELLGLE-------KLEILTILSALESVSGRFEYVISQDGVTAIVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ I E V+ + G+ ++ +A + S + ++ S Sbjct: 347 HTPDALKNVLETINDIKIGAEK----VITVLGCGGDRDKTKRPKMAHIASQLSNQVIFTS 402 Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + I + + GD++++ K Sbjct: 403 DNPRTENPQTILEDMEAGIALQNYKKTLTILDRKQAIRTACKFSEPGDILLIAGKG 458 >gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] Length = 493 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 35/451 (7%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIGSL 81 V G+++DSR + F + G G +FI +A++ GAG ++ + + + Sbjct: 21 PVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDGA 80 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + + +D A + A AT++ +TG+ GKT+ + A IG Sbjct: 81 EVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANIG 140 Query: 142 SYNNH--------IGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRPHIAV 188 + P L + + S G + VR A Sbjct: 141 TTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLVAAG 200 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL E +AKA +F + + + D + Sbjct: 201 FTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAELL 260 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G K+A +L + ++ M +G + + + +G A N+L+ +G+V A Sbjct: 261 TVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMATGA 320 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 V + L GR ++ N T+ + + A + L + PH Sbjct: 321 QVGDLVPLLPRLATVRGRMQKVARRENGA--TVFVDYAHTPDA----LKTALRALRPHVL 374 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI- 422 GR + V G G S L + V+++ ++ + Sbjct: 375 GRLVVVFGA----GGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGCP 430 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L +L GDV+++ K Sbjct: 431 EATDVPDRAEAILRGVDALEPGDVLLIAGKG 461 >gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] Length = 410 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 79/420 (18%), Positives = 146/420 (34%), Gaps = 33/420 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL +EE A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + I +FG + ADFQ K S S ++ + + Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + L ++ AIK + +GR + Y Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P + + + + + V + G+ + +A++ Y + ++ Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405 >gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia ubonensis Bu] Length = 292 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 8/239 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + + IQG ++ + +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLGEAARLIQGATVHGDARVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLADV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +GA +V+ + L++P + AL LA R R ++A+TGS GKT Sbjct: 60 AARGAAAALVSH----TPAGLAMPTIEGGETRAALGALAHGWRKRFPLPVVAVTGSNGKT 115 Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 T KEM+ ++ A G+ NN +G+PLTL R+ + ELGM+H GE Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLNAAHRLAVIELGMNHPGETEI 175 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 L L P +A++ H + +E +A A + L G DD++ + + Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAYAGIWR 234 >gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 495 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 87/481 (18%), Positives = 143/481 (29%), Gaps = 48/481 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L + G I P + + DSR I P F I G H D H FI + + Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+ + V I V V D+ AL+ + ++ ITG+ GKTT Sbjct: 62 GARAVLTQRENVD--VPAGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTT 119 Query: 122 TKEMLTIALSSI-------------KKTYACIGSYNNHIGVPLTLARMPV---DVDFGIF 165 T ++ L + + + V + + +D + Sbjct: 120 TSYLVRAILRAAGRRVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVM 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ L + R AV T + HL +E A AKA +FE + G Sbjct: 180 EVSSHALDQGRVAGI--EFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAG 237 Query: 226 NYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + A + S+G ++ A R + + M + + + Sbjct: 238 KTAVINADDAAGPVMRAHTTCPVLSYGVTQQAALTARDIRLAQDGMTMRLVHGDEECALT 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H G N+L G D AL F GR + R + Sbjct: 298 LHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAH 357 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + +VL GR I V G G + + V Sbjct: 358 TPDG-------MENVLRTARAVTRGRIIVVFG----CGGDRDRTKRPIMGRIGAEMADLV 406 Query: 405 WLSG-----FHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVK 450 +++ A+ D + + GD V++ K Sbjct: 407 YITSDNPRTEDPAAILDEVESGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] Length = 489 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 76/476 (15%), Positives = 159/476 (33%), Gaps = 46/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + H++ + I DSR +AF AI+G DGH FI AV+ Sbjct: 1 MKQLKDLLFGVSLHAVSGSTAVGIESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 G V+ + + + V D AL +A ++ +TG+ GKTT Sbjct: 61 GVRAVICEE--LPQDLADGVTYVEVADTQLALAVMASNYYGNPSANLRLVGVTGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFEL 167 +L I + + R+ + + Sbjct: 119 VSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEAGVEFCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + + T ++ HL + K ++F+GL K+ N Sbjct: 179 EVSSHGIAQRRTEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDGLPKSAFALTNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + A + ++ ADF+ + +Q + +++Q +++ Sbjct: 239 DDKNGLFMIQNTRARKL----TYALRSYADFRAQILEQQLDGQLLKIQDNEVWTKLIGQF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 Y++ + ++ L + + R++ +++ T I + Y Sbjct: 295 NAYNLLAIYATASLLGLG-------QLEILQLLSGLQTVDGRFQYFVSKQRITAIVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ + E V GE +S + + S + + ++ S Sbjct: 347 HTPDALKNVLVTINALRTGNESVITVV----GCGGERDKSKRPVMGHIASDMSETAIFTS 402 Query: 408 G----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V E + GD++++ K Sbjct: 403 DNPRREPPRDIIAEMEAGVEPQNVRKVLVIEDREQAIRTACKMAGGGDIILIAGKG 458 >gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] Length = 493 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 79/461 (17%), Positives = 149/461 (32%), Gaps = 36/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74 G + V GIS+DSR + P F A+ G G +FI +A++ GA V+ + + Sbjct: 12 GLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTDAEGA 71 Query: 75 ---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 ++ + + D AL++ A T+IA+TG+ GKT+ + Sbjct: 72 TLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWI 131 Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178 + + + + GI + S G + Sbjct: 132 EMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGLDQRR 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL + AKA +F + + D + Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVA 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + G+ D L + + + +GK+ + + IG A N+L+ Sbjct: 252 IARARGCEVITVGR-DGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLL 310 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V AD L GR + N G +D ++ + + Sbjct: 311 AAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDN-GGAVFVDYAHTPDAIAT----- 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 L + PH GR +A++G G L + + V+++ + + Sbjct: 365 ALQAMRPHVMGRLVAIVGA----GGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPAT 420 Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L ++ GD +++ K Sbjct: 421 IRAAVMEGAPEATEVGDRAEAILRGIDAIGTGDALLIAGKG 461 >gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 487 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD+F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455 >gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] Length = 493 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 87/471 (18%), Positives = 158/471 (33%), Gaps = 40/471 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T DL G + + + G+++DSR++ P F A+ G G +FI +A++ GA Sbjct: 7 TLADL-----GLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGA 61 Query: 66 GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + + S + D AL A T++ +TG+ GKT+ Sbjct: 62 SAVLTDVEGAKIADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTS 121 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLARMPVD---VDFGIFELG 168 S++ IG+ P+TL R+ D + Sbjct: 122 VATFTRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAME 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + VR A T HL + +AKA +F + + Sbjct: 182 ASSHGLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINL 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + A A + + S G K D Q+ + + + QG+ +V + I Sbjct: 242 NDPRGAEIALLAAERGQRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLI 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A+N+ + G+ A L GR + N +D ++ Sbjct: 302 GGFQAENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGA-SVFVDYAHTP 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + L + PH GR + V G G + L + + ++++ Sbjct: 361 DAIAT-----ALKALRPHVMGRIVVVFGA----GGDRDTTKRPLMGQAAREHADVLYVTD 411 Query: 409 -----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A+ + + L +L GD ++V K Sbjct: 412 DNPRSEDPATIRAAIMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKG 462 >gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] Length = 243 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS+++ F I DGHD++ A+ Sbjct: 1 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VD+ L AL +LA R +I ITGS GKTT Sbjct: 59 NGAVASLWKKSYG--TPPKGVPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LSS + + G++N+ IG+PLT+ M D +F I E+GMS G Sbjct: 117 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGCRIIERFTW 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222 >gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] Length = 518 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 74/464 (15%), Positives = 145/464 (31%), Gaps = 46/464 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA---SIG 79 + + GI+ +S+ F I+G DGHD+I A GA +++ + Sbjct: 22 EEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYIEEACNLGASCILIEKLVSGGRMLKF 81 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 ++ V V D AL ++ K +I +TG+ GK+T M+ L S+ + Sbjct: 82 PENVAVVLVKDTREALAGISRIWFGSPADKLKVIGVTGTKGKSTVAVMIREMLESLGQKC 141 Query: 138 ACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 IG+ +H+G + + + E+ S G + Sbjct: 142 GLIGTIAHHLGNEVVTSQNTTPDAFTIQSYFAKMVEAGCHYAVMEV--SSQGIKQHRIDG 199 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + IAV T H+ + + E+ N DD+ + + Sbjct: 200 IWFEIAVFTNFGEDHIGP-GEHASLGEYRYYKSCLFEQCRIGIGNLDDAQCSYMFQRKCC 258 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---HMAQNMLM 298 + + F+ + S++ + K++ N+ Sbjct: 259 TKYGFTCREEEGQERGFRNSHVLTAEKISFLMEGGELKTVFYADDRKYELALPGKFNVYN 318 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + ++ +A V RG+ R + ID ++NA + Sbjct: 319 ALAALQTVSCLGFEREEAGDVLKHLVVRGRMERVDAGENILCYIDYAHNA-----MSLAK 373 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414 VL + + R + V G G + S + V + S + Sbjct: 374 VLKMLRIYEPERILLVFG---CGGNRAGSRRSGMGRVAGELANLTIITSDNPRWEEPAKI 430 Query: 415 KDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I + + LF GD++++ K Sbjct: 431 MADVEEGIKETSGAYRMIQDREEAVLFAVEMARQGDILLIAGKG 474 >gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] Length = 487 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 94/474 (19%), Positives = 151/474 (31%), Gaps = 47/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L+ + FV G++ DSR + F A+ G DG DFI A+ KGA Sbjct: 6 LSDILR------RDLDHDPFVTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAA 59 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ D A++ S + V DV A A A +A+TG+ GKT+ Sbjct: 60 AVLA-PDDTAALESPDSLLVKVSDVRRAYALAAKAFYGSQPKICVAVTGTNGKTSVATFC 118 Query: 127 TIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 ++ G + + Sbjct: 119 RQIFSTLGKKSASMGTLGVVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLA 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L S G + V A T + HL + +E AK +FE L G + Sbjct: 179 LEASSHGIDQRRLDGVSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVL 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DS A L ++ S G+ + + + + ++ QG+ E Sbjct: 239 NADSDAYNSFAAMCVLSGTSVMSVGE-RGRGLAMVGRDLTVDGQILFIEHQGRKYETKLP 297 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G A N L+ G+ D I ALS+ GR +R N +D ++ Sbjct: 298 LAGLFQASNALVAAGLCIAAGEDPGAVIHALSLLKGARGRLERVGAKRN-AAEVYVDYAH 356 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + VL + PH +G+ + V G G ++ + Sbjct: 357 TPDGLET-----VLKALRPHTQGKLVVVFG----CGGDRDKGKRPQMGAIAARLADRAIV 407 Query: 407 SG-----FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + E L S L GDV+VV K Sbjct: 408 TDDNPRSEDPATIRAEVLAGMSSETVEIGDRKKAILEAVSGLKTGDVLVVAGKG 461 >gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas sp. JS666] gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas sp. JS666] Length = 501 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 79/477 (16%), Positives = 144/477 (30%), Gaps = 45/477 (9%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L T + ++ G + DSR + + F A G DG ++ A+ Sbjct: 3 TQLHTPEQAARWLRERVTG--------SLRTDSRMVGGGDGFIAWPGAATDGRKYLGDAL 54 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 GA +V G V + A +A A + A+TG+ GK Sbjct: 55 ASGARACLVELQGFEPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIF 165 T+T L AL + + +G+ + R VD F Sbjct: 115 TSTTWWLAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATC 174 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 L S +G + +A+ T HL +++ AK +F + Sbjct: 175 ALEASSIGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVIN 234 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D E + S A +++ + A +K +V + V Sbjct: 235 VDDGKGLE--LSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSS 292 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G + N+L + + + + A+ A + P GR Sbjct: 293 KLVGQYNVYNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMDTLAEEGLPLVVID---- 348 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P +++ ++ L ++ G+ V G G + L ++ N V Sbjct: 349 YAHTPDALEKVLTALQPVARSRGGQLWCVFG----CGGDRDAGKRPLMAAVAEKNADRVV 404 Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + L VH S DVV++ K Sbjct: 405 VTSDNPRSENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKG 461 >gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus haemolyticus JCSC1435] gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus haemolyticus JCSC1435] Length = 494 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 152/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L + I+ + V I+ DSR+ + F A KG D H F + V +G Sbjct: 1 MNANELFEKIRVKQVIGTLDINVTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 A ++VVN + + V D L + LA + T I +TG+ GKT+ Sbjct: 61 AKVIVVNHQQD---INGDVTQVIVPDTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSI 117 Query: 123 KEMLTIALSSI--------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + + + + + E + Sbjct: 118 ATMIHLIYRGLGKGSAYLGTNGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ I+++G +A F + ++ + + + V + Sbjct: 238 LNNDDDFSKYLASVTPYEIFTYGIDHDAQFMAKNIQESLQGVHFDFDTPIGTYSVKTPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++ ++ + P L +L + Sbjct: 298 GKFNISNIMAAMIAVWSKGTSMEDIVRVVENLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ +V + Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLIG-MA--GERDLTKTPEMG--AVACRADYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H HY + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium DSM 319] gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium DSM 319] Length = 490 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 73/476 (15%), Positives = 155/476 (32%), Gaps = 46/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + + I +DSR + P F I G DGH F AV+KG Sbjct: 4 MDLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ + + + + A+ LA A + K +I +TG+ GKTT Sbjct: 64 AVAILAEKPVDVEVPVVRV-----KSTKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ S K IG+ IG + + + E + Sbjct: 119 THLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S H +AV + + HL +E+ A G Sbjct: 179 VSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKF 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + T+ ++G + +D + + + + ++ +++ V Sbjct: 239 AVLNADDAATEEYIKNTAATVITYGIDRESDIRATNIQITNSGTTFDLTTPTETVRVGMK 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + + ++ + V GR + + FT+I + Y Sbjct: 299 LIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGR---FEVVDAEQDFTVIVD-Y 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + + + + + ++G G + ++ + L Sbjct: 355 AHTPDSLENVLKTVKEFA---KRNIYVIVG----CGGDRDRTKRPIMARIAAEYSTQAIL 407 Query: 407 SGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +++ L +V + + ++ DV+V+ K Sbjct: 408 TSDNPRSEDPLAILKDMEEGLDTDNYVTIA-DRAEAIRYAVETVHADDVIVIAGKG 462 >gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] Length = 509 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 84/459 (18%), Positives = 143/459 (31%), Gaps = 45/459 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSL 81 + G+S+DSRSIA E F A+KG DG FI A+ +GA VV + D S Sbjct: 30 NPEITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDFDFSSVPN 89 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI------ 133 IP+ V ++ L+ +A +I +TG+ GKTT ++L + + Sbjct: 90 DIPLVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAAS 149 Query: 134 --KKTYACIGSYNNHIGVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRP 184 Y S G+ A + + +S + V Sbjct: 150 IGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGATFVAMEVSSHALEQGRVDAVNF 209 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV T I+ HL E +AK+ +F + D + L S A Sbjct: 210 EGAVFTNISRDHLDYHGTFEHYIAAKSRLFTFDALRFAVINGDDSASRAL----SAASTA 265 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ + +G + E ++ + IG N+L + Sbjct: 266 ESSFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANIQSCLIGNFNILNLLAVITTAC 325 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + + + P RG+ R ++ G T+ + + A L + Sbjct: 326 AAGYSLPAVAEQVQHLQP--ARGRMQRIVVDGGDVTVCVDYAHTPDA----LEKALLALR 379 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDAL 418 V G G ++ + V ++ + + D L Sbjct: 380 AQAANDVWVVFG----CGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRTETPACIIDDVL 435 Query: 419 PR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V E F GD V++ K Sbjct: 436 SGIPASDKRVTNFEDRSAAIEFAILQAKSGDTVLIAGKG 474 >gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 252 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 10 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 126 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIERFTW 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 186 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 231 >gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 155/471 (32%), Gaps = 40/471 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L G + Q V G+S+DSR F A+ G + G FI A+++GA Sbjct: 10 SLTEL-----GLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGA 64 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + + A L ++ + +D L+ A +IA+TG+ GKT+ Sbjct: 65 AAVLTDAEGAALARDLLDGAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTS 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELG 168 + + +G+ P+TL R+ + + Sbjct: 125 VASFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V+ A T HL + +E AKA +F + + Sbjct: 185 ASSHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINI 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D A+ + I G+ AD LR + + M +G+ + I Sbjct: 245 DDPRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLI 304 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G +N+L+ G+ AD L GR + N +D ++ Sbjct: 305 GGFQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGA-AVFVDYAHTP 363 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + + PH GR IA++G G + L + + V ++ Sbjct: 364 DAVGT-----AIRALRPHVMGRLIAIVGA----GGDRDAGKRPLMGRAAGEHADQVIVTD 414 Query: 409 -----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A+ L L GD +++ K Sbjct: 415 DNPRSEDPALIRAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKG 465 >gi|239636818|ref|ZP_04677820.1| Mur ligase middle domain protein [Staphylococcus warneri L37603] gi|239598173|gb|EEQ80668.1| Mur ligase middle domain protein [Staphylococcus warneri L37603] Length = 686 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 103/480 (21%), Positives = 193/480 (40%), Gaps = 29/480 (6%) Query: 4 LWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSI-----APQEAFFAIK--------G 48 + T D+ I G I +N I + A+F+ K G Sbjct: 1 MLTIKDISNIIGGTLYDIENNIDREINDFET----IYGFVKSKHTAYFSPKKDTWWRELG 56 Query: 49 PHYD---GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 + G+D I + GL++ T IP V D + A LA+ R + Sbjct: 57 RSKNAPEGNDLIDKSNPN-VGLIITET--YVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQ 113 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 K +IAITGS+GK++T+ + L + L ++ + DF + Sbjct: 114 YKNPVIAITGSMGKSSTRMLTASLLKDYPIQENRGNNNIRAAIYANML-KLIKNPDFAVI 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E ++ + + ++P IAVIT I AH S F+ I+EIA KA IF GL + G + Sbjct: 173 ETSLNAINHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAII 232 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N D F + L ++H + + ++ + D L+ + + ++++++ + Sbjct: 233 NGDTMFADYLIDQAHQY-TQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNY 291 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + I+ + ++ + L F P K TLID++ Sbjct: 292 QINTFSDGMISNTLAAILILKNLNIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDT 351 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +NA+ +M AI + +G +I LG + ++G S+ H +L LS N ++ Sbjct: 352 HNASLPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYIL 411 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLL 464 + + + + ++ H+ Y + + ++ + VV++KSS+ F + L Sbjct: 412 CLDDDLRPVVNKI-KNKHITYYPNKELMINDLKYLCNEDSVVLLKSSSGGTQFSEVAKTL 470 >gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] Length = 460 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 180/456 (39%), Gaps = 17/456 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP-QEAFFAIKGPHYDGHDFILH 59 M L + + + I G + ++ + ++ + F + +D FI Sbjct: 1 MKKL-SIGTIRKVIHGSLVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRFIKK 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + +V + + + + V+ + + R + +IA+TG+ GK Sbjct: 59 YLP---CAIVTDRPIGHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M L KT + S N L ++ V+ ++E ++ G I+ + Sbjct: 116 TTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAVAAPGYIKKSS 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +P I +IT I HL +E AK E+ + + + GT+ LN DD + + + Sbjct: 176 RYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADDDNIKKISLED 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I +G +N+D+Q + + + + K +V G G H N + Sbjct: 236 FKGKI---IYYGVGENSDYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +I + + + LI +++N NP S++A+I Sbjct: 293 IAAAYEVGISYRDSI---KLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSLEASIKT 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + +I+ + + IA++G + +G+ S+ H + +++ Y++ + G + Sbjct: 350 MCEIAKNRKK--IALVGSIDALGKNSRQLHQKVGDMICQYDLDVLITIGSQARYIALQCR 407 Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 R+ V+ + +G+ + + ++ K S Sbjct: 408 RNGFKGKVYSFSSTEGVRRLLNQIVDKDTTLLTKCS 443 >gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 500 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 79/454 (17%), Positives = 137/454 (30%), Gaps = 35/454 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIG 79 + ++ IS DSR I F AI G DGH FI AV +GAG++VV+ + + + Sbjct: 27 ERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFIPQAVAQGAGVIVVSSMHQSQDFSHVV 86 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP+ VD+ L+ +A + I A+TG+ GKT+ + + Sbjct: 87 KADIPILVVDNTRRFLSLVAARLYGKHPEKIFAVTGTSGKTSVASFVQQISQHAGLSSFQ 146 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL--------------GMSHLGEIRFLTHLVRPH 185 IG + + R+ I + S G + ++ Sbjct: 147 IGPISLMPSLQREDNRLTTPSPVYIAQALAYLASQGTTHVSIEASSHGLDQHRLDGIKFI 206 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T H+ + +AK +FE L G+ + ++ + K Sbjct: 207 AGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLPKGSPAVICNNDD-DSWSNKVMERAHN 265 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +R +V + + + A + L + Sbjct: 266 AGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEGKDFD-FLFPLQGAFQVSNALVSAGL 324 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 A + R+ N I Y P S++ + L I Sbjct: 325 CIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGRIYVDYAHTPNSLEMVLRNLRNI-- 382 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420 GR I V G G + ++L ++ + A++ + Sbjct: 383 -TSGRIIVVFG----CGGDRDRGKRKIMGKIALELADLSIVTDDNPRSENPQAIRAEIIN 437 Query: 421 SIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 E S L DV+VV K Sbjct: 438 GFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKG 471 >gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] Length = 460 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 180/456 (39%), Gaps = 17/456 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP-QEAFFAIKGPHYDGHDFILH 59 M L + + + I G + ++ + ++ + F + +D FI Sbjct: 1 MKKL-SIGTIRKVIHGSLVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRFIKK 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + +V + + + + V+ + + R + +IA+TG+ GK Sbjct: 59 YLP---CAIVTDRPIGHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGK 115 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTTK+M L KT + S N L ++ V+ ++E ++ G I+ + Sbjct: 116 TTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAVAAPGYIKKSS 175 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +P I +IT I HL +E AK E+ + + + GT+ LN DD + + + Sbjct: 176 RYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADDDNIKKISLED 235 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I +G +NAD+Q + + + + K +V G G H N + Sbjct: 236 FKGKI---IYYGVGENADYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAA 292 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + +I + + + LI +++N NP S++A+I Sbjct: 293 IAAAYEVGISYRDSI---KLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSLEASIKT 349 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + +I+ + + IA++G + +G+ S+ H + +++ Y++ + G + Sbjct: 350 MCEIAKNRKK--IALVGSIDALGKNSRQLHQKVGDMICQYDLDVLITIGSQARYIALQCR 407 Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 R+ V+ + +G+ + + ++ K S Sbjct: 408 RNGFKGKVYSFSSTEGVRRLLNQIVDKDTTLLTKCS 443 >gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS185] gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS185] Length = 499 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 82/486 (16%), Positives = 152/486 (31%), Gaps = 53/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + N +++DSR+I + F A+ G DG FI A+ Sbjct: 1 MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56 Query: 64 GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110 GA V+V+TD G + V + ++ +A + + Sbjct: 57 GAAAVLVHTDDADQHGKVLHSDNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116 Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163 I ITG+ GKT+T +++ ++S+ +K N G + D Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHD 176 Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D L +S + A F + K + + Sbjct: 237 STLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 ++ +G N+L L + + D+ + + P GR +R+ A N Sbjct: 297 PEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +A L+ + H G V G G L Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCAGDLWCVFG----CGGDRDKGKRPLMGKA 405 Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + ++ + + L S + + GDV+ Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVI 465 Query: 448 VV--KS 451 ++ K Sbjct: 466 LLAGKG 471 >gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] Length = 484 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 84/453 (18%), Positives = 154/453 (33%), Gaps = 35/453 (7%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V GIS DSR + P FFA+ G DG + A ++GA +V +G Sbjct: 16 ASADLEVTGISSDSRQVKPGVIFFALAGSKADGSAYAADAARRGAVAIVTAKGST--VGG 73 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 IPV VDD AL A T++A+TG+ GKT+ A I Sbjct: 74 HPIPVLAVDDPRLALALGAARFFGNQPQTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASI 133 Query: 141 -----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHI 186 + P+ L ++ + D G+ + S G + V+ Sbjct: 134 GTTGVVAPGRNEYGSLTTPDPVALHQLLKELADAGVTHASMEASSHGLDQRRLDGVKLAA 193 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + H+ +E+ AK +F+ L G + + D + ++ Sbjct: 194 GGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAARAAGLE 253 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ + +L++ + + EV+ G E+ G N L++ G+ Sbjct: 254 VLTVGRHGDF-LRLKRVEHERHRQRAEVEANGVLYEIDLPLAGDFQISNALVSAGLAIST 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A+ +L GR N +D ++ + +VL+ + P Sbjct: 313 GIPTAKALMSLEKLKGAPGRLDLVGTTANGA-PVYVDYAHKPDALE-----NVLTSVRPF 366 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRS 421 GR + V G G + ++ V ++ + + ++ A+ + Sbjct: 367 TTGRVMVVFG----CGGDRDRGKRPIMGEIATRLADVVIVTDDNPRSEVPETIRAAIMAA 422 Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 + L GD ++V K Sbjct: 423 APGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKG 455 >gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] Length = 494 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 75/460 (16%), Positives = 147/460 (31%), Gaps = 42/460 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVA 76 + V + +DSR+I + F AI G DG FI AV +GA V+ + Sbjct: 21 ELDAIVVEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGL 80 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131 ++PV V ++ L++LA +I +TG+ GKTT +++ L Sbjct: 81 VEWLNAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140 Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIF-ELGMSHLGEIRFLTHLV 182 + + N G + + R + + ++ + +S G ++ + Sbjct: 141 SAVMGTTGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKAL 200 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + V T ++ HL +EE A AK +F + + D+ + S+A+ Sbjct: 201 NFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQHKCKHAVINVDDEVGKAWVSDLSNAI 260 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + G + ++ IG A N+L+ Sbjct: 261 AVSLSPLTG--YQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFST 318 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D + S P GR + ++ + +A L+ Sbjct: 319 LLSLGIDKQILVDTASQLQPVIGRMELFQTPNKAKVVVDYAHTPDA-------LEKALAA 371 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H G+ A+ G G + + V + + +S + Sbjct: 372 LRVHCSGQLWAIFG----CGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKD 427 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L F D++++ K Sbjct: 428 MLAGLSEPESAFVEHDRYQAVKFALEQAGSNDIILLAGKG 467 >gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea] gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] Length = 492 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 165/478 (34%), Gaps = 49/478 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +DLL + NG+S+DSR+I + F A+ G DG FI A ++GA Sbjct: 3 LNDLL----APWLHYSGSESFNGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQGAV 58 Query: 67 LVVVNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +V+TD G SL I F ++ L A+ A + + +I +TG+ G Sbjct: 59 AALVHTDEPTEHGQVLSEASASLQILFFQLNQELSAIGAQAYPLAPQ-RLKLIGVTGTNG 117 Query: 119 KTTTKEMLTIALS-SIKKTYACIGSYNNHIG----------VPLTLARMPVDVDFGIFEL 167 KT+ +++ ++ K+ N G P+T+A D D +L Sbjct: 118 KTSITQLMAQLVALQGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGADL 177 Query: 168 GM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 S G I+ V +AV T ++ HL ++ AK +F+ ++ Sbjct: 178 CAMEVSSHGLIQNRVAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKFSSLQSSLI 237 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ + L + A + + A + + + ++ Sbjct: 238 NLDDEVGRQWLSEEQEAKHLGFSICSAHADAASIYTQDNHLHHQGVMAMLVWPEGRAKLA 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N++ LG + ++ D+ + ++ + P GR +R+ A Sbjct: 298 SPLLGSFNLSNLVAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTANGVTIVVDYA- 356 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 S A L + H EG+ + G G L + V Sbjct: 357 ------HSPDAIEQALKALRGHCEGQLWCLFG----CGGDRDKGKRPLMAQAAETYADKV 406 Query: 405 WLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + L V + + + GD+V++ K Sbjct: 407 MITSDNVRSESPEAIIEDILVGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKG 464 >gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila psittaci RD1] gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] Length = 483 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 85/472 (18%), Positives = 156/472 (33%), Gaps = 42/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + G + V ++ DSR++ + F A KG H DG+DF A++ G Sbjct: 1 MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFSHLAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A V + L + D+ LA ++ ITG+ GKTT Sbjct: 61 AIAVASS----IYNPFLPVVQIISSDLPQLEADLAAKYYGHPSQKLCVVGITGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + K IG+ + +G + + + Sbjct: 117 SHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEMVKSNLSAAVME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +G V + V+T I HL S EE AK ++F L +G +N D Sbjct: 177 VSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLFSMLPSSGLAVVNND 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + A I ++G ++AD++ + + ++ +G++ I Sbjct: 237 LHYAAQFIEATQAQPI----TYGIEQHADYRASNLRFSPFGTDFDLLYKGETFACSSPLI 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N+L + + + +S E R + ID ++ Sbjct: 293 GQHNIYNVLAAISVAHQRLGCDLQQL--ISAVANVETPRGRLEPVFSGPCPIYIDYAHTP 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + ++ L + P +GR I V G G + + V + Sbjct: 351 D--ALDNVCKTLQALLPQ-DGRLIVVFG----CGGDRDQSKRKIMAQVVEKYGFAVVTTD 403 Query: 408 ---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 G + + + + S D D+V+V K Sbjct: 404 NPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455 >gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 488 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 82/466 (17%), Positives = 151/466 (32%), Gaps = 46/466 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I I + +++DSR+ F AIKG DG +I A+ GA V+ D Sbjct: 10 IDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQH 69 Query: 79 GSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132 + IP+ + L++LA T++ +TG+ GKTTT ++L Sbjct: 70 LQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQL 129 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIR 176 + T A +G+ N G+ + + + +S G ++ Sbjct: 130 LGHTGAVMGTIGN--GLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQ 187 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 V AV T ++ HL +E A+AK +F L+ I D L Sbjct: 188 HRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQIIDADDPVGAVWLA 247 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 HA+ + F + + + + + ++ + + E+ IG N+ Sbjct: 248 EMPHAVAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNL 307 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ + L + I ++ GR + + +A Sbjct: 308 LLVTATLLTLGYPLSGLINSVHKLTGVCGRMEILHAPQKPTVIVDYAHTPDA-------L 360 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410 L H G+ + G G S L ++ HV + + Sbjct: 361 EKALQAARLHCRGKLWCIFG----CGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEP 416 Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V S V+ DV+++ K Sbjct: 417 KKIMADILNGFVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKG 462 >gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] Length = 492 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] Length = 492 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 82/462 (17%), Positives = 145/462 (31%), Gaps = 39/462 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + + I DSR + FF I+G DGH ++ A+ +GA +V + + Sbjct: 6 ELFKVESDLKIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLRR 65 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134 I V DVL LN++A + I +TG+ GKT ++ L Sbjct: 66 YY--QGIVYVQVPDVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARVVARLLGRYL 123 Query: 135 KTYA-------CIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHL 181 K + G + + + E L +S G Sbjct: 124 KMGYVGNNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRVDS 183 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V I V T H+ I+ + + ++F L++ G LN D+ F + ++ Sbjct: 184 VNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRFNHFLSMNYK 243 Query: 242 --LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I S+G AD R + + S ++ ++ + V I N L Sbjct: 244 DLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNTLAI 303 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + L + + A+ P EGR + + + Sbjct: 304 LTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPVKQPFHIIVDYCQHAHN------FEEVF 357 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLAL 414 G G IAV G G + + + Y +V L+ + + Sbjct: 358 KFVYGVKGNGHLIAVFGAP---GRKDIHKRSKIGALANKY-CDYVILTEQDERDDDIEGI 413 Query: 415 KDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + I + GDV+++ K Sbjct: 414 CEQIQEQIVDPISVIITNRRFAIQQAIDAACAGDVILILGKG 455 >gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] Length = 487 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 77/455 (16%), Positives = 156/455 (34%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ + F A+ G +DG I A+Q+GA V D + + Sbjct: 15 DLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVAYEVDGATVLPITDV 74 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140 P+ V + L+ +A ++ +TG+ GKT+ +++ AL + + + Sbjct: 75 PLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 141 -----GSYNNHIGVPLTLARMPVDVDFG--------IFELGMSHLGEIRFLTHLVRPHIA 187 G+ T + V + +S G + + +A Sbjct: 135 TLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A+AKA++ +N DD F L A+ + + Sbjct: 195 VMTNLSRDHLDYHGTMEAYAAAKAKL-FAWNDLKCRVVNLDDEFGRHLAAQDSESRLISY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + +A R+ + E + + +G N+L +G + L Sbjct: 254 --SLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGLD 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D + L GR R + ++D ++ + VL + PH Sbjct: 312 YALDEILNVLPKLEGPAGR--MQRLGGGEQPLVVVDYAHTPDALE-----KVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDAL 418 +G+ + + G G L + V ++ G ++ Sbjct: 365 KGKLLCLFG----CGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQIFDDIRAGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +S DVVV+ K Sbjct: 421 KDASKAAFVAGRGAAIAQLIASASADDVVVLAGKG 455 >gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] Length = 487 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 69/477 (14%), Positives = 143/477 (29%), Gaps = 48/477 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L + +++ VN I DSR I + F AI G DGH +I + Sbjct: 1 MMILKDILYKVTINAVVGSTSVSVNKIEFDSRQIQVNDVFVAISGTVTDGHRYIDRVIDA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V ++ + V + AL +A +I +TG+ GKTT Sbjct: 61 GATTIVCE--VLPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKLIGVTGTNGKTT 118 Query: 122 TKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FEL 167 +L + + + D G+ + Sbjct: 119 VSSLLYQLFKKAGYKVGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQMNDEGVEFCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T +R + T ++ HL E K F+ L K N Sbjct: 179 EVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVKKLFFDQLPKDAFALSNM 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + A Y++ AD++ + + ++V ++ Sbjct: 239 DDKNGLAMLQNTQAKK----YTYALKNYADYRAQILENEFSGLLLKVNDSELWTRLIGSF 294 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 Y++ + L + E R++ ++ T + + Y Sbjct: 295 NAYNILAIYGTAELLGLEKDEI-------LRLISELENVSGRFQYFISDEKITAVVD-YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++K + ++ I E V G ++ + V + Sbjct: 347 HTPDALKNVLETINNIRTKNEELITVV-----GCGGDRDKTKRPKMAHIASTLSTKVIFT 401 Query: 408 GFHVLA-----LKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + + + D++++ K Sbjct: 402 SDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDIILIAGKG 458 >gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] Length = 484 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ I + I ++GI++DSR I P F A+KG DGH +I A++KG Sbjct: 1 MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV + ++ V+D + KLA SK ++ +TG+ GKTT Sbjct: 61 ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168 +L I + N P + D + Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + T + HL +E AK F+ L KT N D Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A ++++ +DF+ + + E + L ++EV I Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L G +L + + ALS P GR R + +A Sbjct: 291 GRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G I V+G G L ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGNVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V DV++V K Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457 >gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 486 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD+F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKG 455 >gi|56807439|ref|ZP_00365398.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pyogenes M49 591] Length = 342 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 151/340 (44%), Gaps = 22/340 (6%) Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194 +TY G+YNN IG+P T+ MP D + + E+G H+G+IR L+ + RP IAV+T + Sbjct: 6 QTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGE 65 Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 AHL F ++IA K +I +G+ G + D L + FG + Sbjct: 66 AHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM------VIRFGNQQ 119 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314 D ++ + + V G + A N ++ + +L + I Sbjct: 120 EIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDII 175 Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374 AL G R ++ + YNANP +M+ + + I+ + G++IAV Sbjct: 176 AAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANIAKNPGGKKIAV 232 Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYS---- 427 L DM E+G+ S H L + L+ NI + G H+ L + + VHY Sbjct: 233 LADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKAE 292 Query: 428 --ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + + ++Q+ L D +++K S+S +L++ L+ Sbjct: 293 QEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 332 >gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS223] gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS223] Length = 499 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 82/486 (16%), Positives = 151/486 (31%), Gaps = 53/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + N +++DSR+I + F A+ G DG FI A+ Sbjct: 1 MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56 Query: 64 GAGLVVVNTDMVASIGSLSIP-------VFGVDDVLGALNKLAVAARL------RSKATI 110 GA V+V+TD G + V + ++ +A + + Sbjct: 57 GAAAVLVHTDDADQHGKVLHRDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116 Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163 I ITG+ GKT+T +++ ++S+ +K N G + D Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176 Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D L +S + A F + K + + Sbjct: 237 STLGHGLLNLDDTVGESWLTELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQGVSATLVW 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 E+ +G N+L L + + D+ + + P GR +R+ A N Sbjct: 297 PEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAKNI 356 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +A L+ + H G V G G L Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCVGDLWCVFG----CGGDRDKGKRPLMGQA 405 Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + ++ + + L + + GDV+ Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465 Query: 448 VV--KS 451 ++ K Sbjct: 466 LLAGKG 471 >gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 321 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 141/303 (46%), Gaps = 60/303 (19%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L +A+ N + +S+ + + F A++G DGHD++L A Sbjct: 1 MI--WNSETLNKALGITISNF---INCNEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA V+V+ + + + V+D AL K+A+ R SKA IAITGSVGKT Sbjct: 55 IDKGAVAVIVSKQIDIADKD---KIILVEDCFEALQKMALYKRENSKAKFIAITGSVGKT 111 Query: 121 TTKEMLTIALSSIKK--------------------------------------------- 135 +TKE L L+ Sbjct: 112 STKEALKTLLTEANYKSLDLLYNEANKEEFEGNTERSTAAYTLVREDVSTGLTYKLPLEA 171 Query: 136 ------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +A G++NNH+G+ + LA M D ++ IFELGM+H GEIR L +++P+IA+I Sbjct: 172 SYIRGLIFASRGNFNNHLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMI 231 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I+ AHL F+ EEIA AK EIFE K +N D + + + + L I I+S Sbjct: 232 TNISEAHLEFFNSFEEIAEAKCEIFENFSKNDIAVINADTNCYNKILSILKKLSITDIHS 291 Query: 250 FGK 252 FG+ Sbjct: 292 FGR 294 >gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 487 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD+F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAIIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455 >gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners LactinV 03V1-b] gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners LactinV 03V1-b] Length = 198 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 96/197 (48%), Gaps = 4/197 (2%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ AI + V+ + DSR F + G DGHD++ +AV GA Sbjct: 5 LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + D + +IPV VDD L AL KLA + T++ ITGS GKTTTK+M+ Sbjct: 63 AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS + ++NN IGVP+T+ M + + E+GM G++ L+ +V P + Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180 Query: 187 AVITTIAPAHLSNFSGI 203 VIT I AH+ F Sbjct: 181 CVITMIGEAHIEFFGYK 197 >gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus SJ1] gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus SJ1] Length = 243 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 6/200 (3%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGHD++ A+ Sbjct: 1 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHDYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VD+ L AL +LA R +I ITGS GKTT Sbjct: 59 NGAVASLWKKSYG--TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 117 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIERFTW 176 Query: 183 RPHIAVITTIAPAHLSNFSG 202 + + + F Sbjct: 177 NGFRGNGPKVDVKNQNLFKN 196 >gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 492 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 76/479 (15%), Positives = 159/479 (33%), Gaps = 48/479 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L + I+ + + G++ +S+S++P F A KG +DG+ +I A+Q G Sbjct: 1 MKLKELFRNIESCQFKGSQEVLLTGLTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + + + + + LA S ++ ITG+ GKTT Sbjct: 61 ACAILTD---LFDPCLKKVVQIIHPNPNEIESILARDYYQNSSEELFMVGITGTNGKTTI 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFE 166 ++ L IG+ +G P + + + E Sbjct: 118 SFIIKYLLDLFHGPCGLIGTIEYIVGSHRYQATRTTPDVIENHKMLYEMSLSGTKSAVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTI 223 + SH + + ++ +AV + + HL +E +AK +FEG Sbjct: 178 V-TSHALIQKRVEYI-DFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRN 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + + ++G K AD Q K S+ + + + QG+++E Sbjct: 236 EKWAIVNIDDPWCEQIVKGCQAHRLTYGIDKPADLQASHIKLSSQGTSINLTYQGQTIEC 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N L +G++ + ++ ++ +GR + N ID Sbjct: 296 FWPLLGRFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGR--LEKVLNNLELDIYID 353 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ + S +VL +S +GR + + G G + S Sbjct: 354 FAHTDDALS-----NVLKTLSEIKKGRLLTIFG----CGGDRDPSKRPKMAIASEQYSDL 404 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + GD++++ K Sbjct: 405 SIVTSDNPRSENPISICQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKG 463 >gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] Length = 494 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 141/474 (29%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LLQ ++ V I+ SR I P FFAIKG H DGH FI + + Sbjct: 3 LKELLQGVEVLQTIGDTSQEVGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQQGK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++VV + + + V D A+ ++A ++ +TG+ GKTT Sbjct: 63 VLVVED--LPEALAEGVTYVQVTDTSRAMGQIAAHFYGHPSEQLRLVGVTGTNGKTTIAS 120 Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170 + + Y H P + R V + +S Sbjct: 121 LSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + V T + HL + K + F+ L KT N +D Sbjct: 181 SHGIALHRIEGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDHLPKTAFALTNIEDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + A ++ + ADF+ + + + V ++ Y Sbjct: 241 NGAYMLQNTSAHKS----TYALGRAADFKGQLLESTFAGMTLRVGNHEVWTSLIGRFNAY 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 ++ + + ++ L+ R++ ++ T+I + Y P Sbjct: 297 NLLAIYATAVLLGEE-------PLEVLTQISTLRSVAGRFQYFVSPSGVTVIVD-YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407 +++ I + I + V G + ++ V L+ Sbjct: 349 DALQNVIETILDIKDPSQRLITVV-----GCGGNRDKGKRPIMAHIATSLSEKVILTSDN 403 Query: 408 --GFHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + I GD+V++ K Sbjct: 404 PREEDPEEILREMEAGITPENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKG 457 >gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prosthecochloris vibrioformis DSM 265] gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeovibrioides DSM 265] Length = 515 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 156/484 (32%), Gaps = 40/484 (8%) Query: 1 MNPLWTFHDLLQAIQG-HSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+ LL A+ + P +G ++ IS DSR I F A++G DGHDF+ Sbjct: 1 MSTSLPVSRLLDALTAPEILSDAPCRGSLSMISSDSRDIEQGGLFVAVRGFQADGHDFVA 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGS 116 AV +GA V+ + + D AL + A A + +I ++G+ Sbjct: 61 DAVSRGAAAVICE-EFPGGDVPPGVCFIKAPDARLALAEAAFALYGGASEQLDVIGVSGT 119 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVDVD 161 GKTTT ++ L+ IG+ G+ L RM + Sbjct: 120 NGKTTTAMLIAAMLNHNGIRCGYIGTGRAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGC 179 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + +S + H VR +AV T + HL +E ASAK +F L G Sbjct: 180 RAVA-MEVSSHALMLQRVHGVRFRVAVFTNLTVDHLDFHGSMEAYASAKQRLFRQLLPEG 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 N DD + G + AD + +E + + Q + Sbjct: 239 RAVFNMDDPRAPFMAEGLPPASCSGCSLSGVERRADRSVCGEWFLAEVTGEDAQSSHLRL 298 Query: 282 EVVHHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 N++ L + A + A + F R Sbjct: 299 SFPDGMFDGELLLPGRFNVMNALLAAATCHAMGVSGGAAAASFPFLPPVQGRMERVDGGP 358 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 Y P +++ + L+++ P GR V G G + ++ Sbjct: 359 GRVRAIVDYAHTPDALQRVLQTLARLKP-AGGRLAVVFG----CGGDRDPSKRPVMGRIA 413 Query: 398 LYNISHVWLS-----GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV 449 V L+ + D + + + + L + D+++V Sbjct: 414 EEIADMVILTSDNPRSEDPERILDDIEQGMSCIGHRRIADRGTAISTAVAELGELDILLV 473 Query: 450 --KS 451 K Sbjct: 474 AGKG 477 >gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus sphaericus C3-41] gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus sphaericus C3-41] Length = 457 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 165/410 (40%), Gaps = 13/410 (3%) Query: 62 QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KG LV+ + +L V V V A R ++A+TG+ GKT Sbjct: 54 RKGPSLVISDKPATELKNALDNTTVLHVKSVAQAYWTFIEYYRGLFHIPVVALTGTCGKT 113 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML S + A + S N L + IFELG+ + G I+ Sbjct: 114 TTKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGLGNTGNIKHQCM 173 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +P I +IT I HL +E AKAEI EG+ GT+ +N DD+ E + + Sbjct: 174 IYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGTLIINADDANIEKISYQKF 233 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I FG +AD++ + +++ V G G H N L + Sbjct: 234 KGKIIK---FGLQDSADYKASAIQFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAI 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 S + + AI L F + G T+ID+++ NP S++AA+ VL Sbjct: 291 AACSEMGLSIRQAIAGLRSFK---QMARHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + + I VLGD+ +G + +H ++ ++ I + G A+ D + Sbjct: 348 DTVGKEKK--VILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITIGKRAEAIADQAKK 405 Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLE 466 VH + + G+ ++ L +V++K S N L Sbjct: 406 DGTKAEVHTFKDVIGVLEILKPKLDADTIVLIKGPMSSKSMIEFANNLKN 455 >gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 487 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD+F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455 >gi|150391164|ref|YP_001321213.1| Mur ligase middle domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951026|gb|ABR49554.1| Mur ligase, middle domain protein [Alkaliphilus metalliredigens QYMF] Length = 403 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 12/368 (3%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 IAITGS GKTTTKEML L + K + + N + + Sbjct: 41 PTVPTIAITGSAGKTTTKEMLASILQTKWKIFKSKENKNFQKNTQKHARMIKPWHQGVVL 100 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E GM + ++P+IAVIT + AH F ++ + K I Sbjct: 101 EFGMGEANTGKMHCSHIQPNIAVITNVGSAHYGVFGNSIKLTAKAKSELIKYMKPEGILY 160 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 +D L G ++ +D+Q K + +V+L + + Sbjct: 161 INNDDNNSKLLQIKGFKGEI--FTVSIKNKSDYQAVNIKYVDQGMTFQVKLDDQLEDFFI 218 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 GYH N L +G+ L + R Y ++D+S Sbjct: 219 PTFGYHNVINALFAIGVSHHQKFSPSEIKVGLKNYEVPVRRLNHYELPNGL---VILDDS 275 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y+ANP + KAAI VL ++ + + +LG M E+GE S H ++ + L+ + + Sbjct: 276 YSANPEATKAAIDVLVELGKIKKK--LVILGSMLELGEYSIEGHKEVGKYLAQNKVDKIV 333 Query: 406 LSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 + G + P S + ++++ + + L++Q + ++VK S + Sbjct: 334 IIGKEARWIGKGAVEAGYPPSRILLFTKSRNKMHLYLQKLIKPNMAILVKGSKLMQMNKT 393 Query: 461 INLLLEEF 468 +N LL+ F Sbjct: 394 LNYLLKNF 401 >gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] Length = 493 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 92/473 (19%), Positives = 162/473 (34%), Gaps = 44/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL A+ I + V I +DSRS+ P F IKG DGHD+ AV GA Sbjct: 8 AEELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 +VV ++ I V D A+ LA T+I +TG+ GKT+ Sbjct: 68 IVVTERELPLGEM---IAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 124 Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFELGM----------S 170 ++ + + + A N G+ A D IF M S Sbjct: 125 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 184 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G V +A+ T + HL +EE AK +F L + + Sbjct: 185 SHGLALGRLAGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLN 244 Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + A+ ++++G K++ ADF+ + + +V++ V + +G Sbjct: 245 ADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L + ++ I+ + P +GR ++ L F + +A Sbjct: 305 EFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSELPVQMFVDYAHTPDA- 363 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + P+ +G+ I ++G G +S +AE S +V L+ Sbjct: 364 ------IEKAIEAAQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKASAA--EYVILTTD 412 Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + GD+++ K Sbjct: 413 DPRYEDYNSITGDLAKGML-HDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKG 464 >gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] Length = 921 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 153/480 (31%), Gaps = 51/480 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL A+ P + +++DSR A + F AIKG DG +I A+ +G Sbjct: 431 NLSDLLGALGIQ----APSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQGV 486 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 V+ VA+ G + IP+ +D++ L+KLA + K +I +TG+ GK Sbjct: 487 SAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIGVTGTNGK 546 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------- 164 TTT ++L + + A +G+ N G+ + + Sbjct: 547 TTTTQLLAQWAQGLGEISAVMGTVGN--GLLDHVVPAMNTTGSAVDIQLELQQLLNQGAT 604 Query: 165 -FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S G ++ + +V T ++ HL + AK +F I Sbjct: 605 LTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFSTHHSGEKI 664 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282 D + L A+ + + ++ F + + + Sbjct: 665 INADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSSWGEGI 724 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N+L L + L ++ I A S P GR + + Sbjct: 725 IESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNRPTVIVDY 784 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L H G+ V G G L ++ Sbjct: 785 AHTPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAVAEELAD 833 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + L E + D+++V K Sbjct: 834 KVVITDDNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKG 893 >gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CNPAF512] Length = 486 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 145/460 (31%), Gaps = 38/460 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ G V ++G+S DSR +AP AF A+ G DG FI A +GA + + + Sbjct: 14 LEAQLEGPVGLLDISGLSSDSRKVAPGNAFVAVAGTKADGAGFIADAAARGAVVAIASQP 73 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + A+ IPV V + L+ A R T++A+TG+ GKT+ + Sbjct: 74 VDAA-----IPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 128 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179 A IG+ + + + + S G + Sbjct: 129 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+ A T + H+ +E +AK +F+ L G + + D + K+ Sbjct: 189 DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAVKA 248 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + + G+ + R +Q+ + + Sbjct: 249 AADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDI----PLAGDFQVANA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + A++ G R + L Y P ++ +V Sbjct: 305 LVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413 L+ + P GR + V G G + ++ V ++ + Sbjct: 362 LNSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 417 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 418 RSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 457 >gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis 8013] Length = 492 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 76/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I A+ GA V + D ++P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] Length = 476 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 150/468 (32%), Gaps = 51/468 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ I S I + G+S +S+ I F AI+G +DGH +I +A++ G Sbjct: 1 MKIEKILKEISYISKNIQNDKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A +V D V ++ V+D AL K++ +I +TG+ GKTTT Sbjct: 61 ASTIVYTNDDVEFKNEIN--YIKVEDARLALAKISNFLSDFPSKSLRMIGVTGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYN---------NHIGVP-----LTLARMPVDVDFGIFELG 168 +++ L+ + +T A IG+ P + + Sbjct: 119 ANIVSFLLNKLGETCANIGTDGAFFNGKTLPTEHTTPEITDINYILNEAKKDGIKNVVME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + + V T ++P H+ ++ AK + +K + Sbjct: 179 TSSHGLCLKRNYGIAYEYGVFTNLSPEHMDYHKTMDNYFKAKMILLNHSKKQVVNLDDDY 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + I ++ + ++ M ++ ++ Sbjct: 239 GKKAKEIFKDALTISINEDSNY------------KAENIKRVDMGLEFFVNGVKFHLKRF 286 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L + I + L ++ KAL F + R + L + + Sbjct: 287 GMYDIYNSLCAIAIANDLGFKLEEISKALEGFKGVKSRFEFIENDLGINIVVDFAHTTTS 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 S+ + + + + G+ + L + + Y+I V + Sbjct: 347 -------FESLYKDLPKDRKKFAVYGIS-----GDRTPDIRRGLGRISAKYDIFSVITTD 394 Query: 409 FHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + + S GD V Sbjct: 395 DPKFDTFENISNQIKEGVEENNGECIIIRNRKEAIKYAISHAKKGDFV 442 >gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] Length = 492 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 146/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + + D+ EL+ +YS+G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHDLQHAVINVDDEYGAELVGRLKKDCPDLVVYSYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++G + + D LP + E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAAASDIILIAGKG 464 >gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] Length = 486 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 151/474 (31%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + ++ + DSR + F I G +DGH FI ++KG Sbjct: 1 MKLSKLLERSEYTLVQGTEDTEISTLVYDSRKVEENSVFVCISGAAFDGHKFIGQVIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A ++VV D+ A + V DD AL +++ A + I ITG+ GKTT Sbjct: 61 AKVIVVQQDVEA---PKGVTVIRFDDTRKALAEMSAAYFGYPAEELMTIGITGTKGKTTI 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L + IG+ IG V R D + Sbjct: 118 TYMIQSVLEHAGQKTGLIGTIETVIGDERIPSVNTTPESYVIQESFRKMADAGCKNVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + + T +A H+ E + Sbjct: 178 VSSQGLMLHRVSGFTFDYGIFTNLAEDHIG-----ENEHKDMDDYIRCKSLLFQQCRQGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++ +FG +D ++ E ++ V K E + + Sbjct: 233 VNGDDDYVERIIKGHTCSLETFGMKPGSDVYADHIERIQEPGYLGVSYDLKGKEEYNVHV 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + +L +S+ L + + +G+ + +ID ++NA Sbjct: 293 DIPGDFTVYNSLAAISLCRHMGIQKKDVLDALNTIQVKGRLEIIKTPGEYTLMIDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + S+L+ I + + + G G +++ ++ EV S V S Sbjct: 353 -----MSLESLLTTIRKYDPKKIYCLFG---CGGNRAKARRYEMGEVSSKLADLTVVTSD 404 Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + GD+V++ K Sbjct: 405 NPRNEEPMDIINDILVGVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKG 458 >gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] Length = 498 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 75/459 (16%), Positives = 149/459 (32%), Gaps = 33/459 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + + + G+++DSR + P F A+ G G FI A+ + AG ++ + + Sbjct: 17 GLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTDAEGA 76 Query: 76 ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + + +D L + A R T++A+TG+ GKT+ Sbjct: 77 RLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTRQIWY 136 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LGMSHLGEIRFL 178 + + +G+ L D G+ + S G + Sbjct: 137 ELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGLDQRR 196 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + T HL E AK +F + + + D L A+ Sbjct: 197 LDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGPLVAQ 256 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + G+ A +L + + + + QG+S + IG A+N+L+ Sbjct: 257 IAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAENVLL 316 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+ +D AL GR + N +D ++ + + Sbjct: 317 AAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGA-TVFVDYAHTPDAVAT----- 370 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 + + PH GR +A++G G L + + V ++ + + Sbjct: 371 AVEALRPHVIGRIVAIVGA----GGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPAT 426 Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + L + L L GD +++ Sbjct: 427 IRAEVLAGAPGATEVGDRAEAILRGADMLEPGDALLICG 465 >gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 487 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 77/461 (16%), Positives = 152/461 (32%), Gaps = 45/461 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G + DG I A+++GA V + + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAVAYEVEGSSVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL + + Sbjct: 71 ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQLVAQALDLLGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAIA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +AV+T ++ HL +E A AK + L + LK +S Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINLDDEFGRKLATLKHESRL 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + S D + + + + +G N+L +G Sbjct: 251 ITYSQLDSAAYLYCRDARFDD-----DGVRATLVTPQGEHFLRSALLGRFNLSNVLAAVG 305 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L +D +K L GR +R A + +A VL Sbjct: 306 ALLGLDYALDEILKVLPKLEGPVGRMQRLGGASKPLVVVDYAHTPDA-------LEKVLE 358 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + PH +GR + + G G L + VW++ + Sbjct: 359 ALRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQIFD 414 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + V + E + +S DVVV+ K Sbjct: 415 DIRPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKG 455 >gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] Length = 493 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 166/480 (34%), Gaps = 47/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL + ++ +++DSR + F AIKG DG FI A+++ Sbjct: 1 MMQLSELL----LPWCELNQVVEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQ 56 Query: 64 GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117 GA V+ +D V G++S P+ +D + L+ +A + K ++ ITG+ Sbjct: 57 GASAVLAQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFYHAEQRKMQLVGITGTN 116 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE 166 GKTT +++ + + K +G+ N G P+ + + D++ + Sbjct: 117 GKTTISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDLENIGAK 176 Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 L S G ++ + + AV T ++ HL + A AK +F +I Sbjct: 177 LTALEISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPKYSI 236 Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D LK +A+G+ + ++ + + + + Sbjct: 237 INADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISLNSDWGTAD 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+L+ + L D+ A GR + + N Sbjct: 297 LSVPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELFSSEGNAKVVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A ++ + H EG+ + G G + + ++ Sbjct: 357 AHTPDALDKAL-------QALRVHCEGKLWCIFG----CGGDRDTGKRPMMASIAEQQAD 405 Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + LS + + L + H F S D++++ K Sbjct: 406 VIILSDDNPRSEDPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKG 465 >gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Laribacter hongkongensis HLHK9] gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9] Length = 491 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 85/450 (18%), Positives = 157/450 (34%), Gaps = 40/450 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPVF 86 + ++ DSR + P + F A +G + DG ++I A+ +GA V + D ++P Sbjct: 24 DRVTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNL 83 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---- 140 V D+ +A R T+I +TG+ GKT+ L A + + + A I Sbjct: 84 PVPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTVG 143 Query: 141 -------GSYNNHIGVPLTLARMPVDVDF---GIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + P+T+ R D + + +S G +F + V AV T Sbjct: 144 NGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVFT 203 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL + + K + + +N DD F L ++ A + T Sbjct: 204 NLTRDHLDYHGSMAAYGATKERL-FHWQGLQHAVINVDDQFGRELASRCTAGQVITYG-- 260 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 ++ D + E ME+ + +G A N+L L ++ + + Sbjct: 261 --LEHGDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLAVLCVNGVPL 318 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A V + R + ++ + Y P +++ A+S L+ I P GR Sbjct: 319 TQ---ACRVLGQIQPARGRMQRVGGTREPLVVID-YAHTPDALEKALSTLADIKP-AGGR 373 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIH-- 423 AV G G L ++ ++ + + D + + Sbjct: 374 LFAVFG----CGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILAGMRQP 429 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GDVV+V K Sbjct: 430 TQVEPDRRAAIHWAVAQARVGDVVLVAGKG 459 >gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] Length = 490 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 80/475 (16%), Positives = 152/475 (32%), Gaps = 43/475 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T LL ++G+ +DSR + P +AF A++G DG F+ A+ Sbjct: 1 MMTLQQLLPNT--TLPATAAGVVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFVSQAIAA 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA V+ + + ++P + ++ +LA ++ +TG+ GKT+ Sbjct: 59 GAVAVLAEAETFSVQQEQAVPRVNFPGLSRSVGELAARWYGEPGSAMNVVGVTGTNGKTS 118 Query: 122 TKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDVDFGIFELGM----- 169 L AL+++ A + G + E G Sbjct: 119 ITWFLRDALNALGHRCALVGTLGLGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVAM 178 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + +AV + ++ HL +E +AK+ +F + Sbjct: 179 EVSSHALDQHRLGPTPVSVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTRDGVKLAVINCD 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + L+ +FG A + +E + E+ + G+S V Sbjct: 239 DPVAYSLV---GCLADGVRCVTFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVTLPL 295 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N++ GI+ D+ AL+ P GR + + A + + Sbjct: 296 FGRFNLSNLMAVAGILHGQGVSTDSLAGALAAITPVPGRMEPVQQAGCPTVIVDYAHTPD 355 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 L H GR ++G G + ++ HV + Sbjct: 356 G-------LEKALQACRAHFAGRLFCIIG----CGGDRDTGKRPQMAAVAERGADHVVFT 404 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + V D + + DGDV+++ K Sbjct: 405 SDNPRSEDPQKIIDEMCAGLTDTGSVQIIVERDRAVMDTVQAASDGDVILLAGKG 459 >gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 513 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 94/453 (20%), Positives = 162/453 (35%), Gaps = 39/453 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 V GI+ +S I P F AIKG DGH +I A+ GA L++ +++ +L Sbjct: 45 DQSLEVKGITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGAILIIGENELM----NL 100 Query: 82 SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P V AL ++A +I ITG+ GKTT + L + + Sbjct: 101 EVPYLKVKSARKALGQVAKLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSS 160 Query: 140 IGSYNNHIG-----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 IG+ +N I T+ ++ V + + +S G + ++ A+ Sbjct: 161 IGTIHNEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYAL 220 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + HL + +EE KA +F+ L+ GT +N DDS+ L A G I Sbjct: 221 FNNLQHDHLDYHNTMEEYFECKALLFQKLKPNGTAIINSDDSWGLKLIEHLTAEGK-KIL 279 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G+ ++ Q+ + + V + + G H N+ M+ V L Sbjct: 280 TVGEQSFSNVQILSKELND----VSVMHKNMEYSLRTPLPGMHNLYNLSMSSCAVHELGV 335 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + +S F GR + + N + +A ++ AI+ G Sbjct: 336 PYEKVKPYMSDFTGISGRFELFHLENNVTVVVDYAHTPDALEIAINTAINN-------GA 388 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKD---ALPRSIHV 424 I V G + +++ LS +I V L G + L + + V Sbjct: 389 NHIITVFGFAGNRDTSKRKAMLEIVTRLSDSSILTVTELFGSTIDKLYTDYVMIQKECQV 448 Query: 425 H----YSETMDGLFLFIQSSLVDGDVVVV--KS 451 GD V++ K Sbjct: 449 EDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKG 481 >gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium hathewayi DSM 13479] gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium hathewayi DSM 13479] Length = 111 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++L+A G + P ++ +SIDSR++ + F + G D H FI A GA Sbjct: 5 TVKEILEATGGRLLCGSPDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 + + + P V D AL L R R K ++ ITG Sbjct: 65 AATFTSE---HDVMEDNRPWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111 >gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] Length = 487 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 159/476 (33%), Gaps = 48/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL I+ I + V G++IDSR I F A+KG DGH +I A++ G Sbjct: 1 MKLQELLYDIKPIQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYIAKAIELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +++ + + I V+ ++ K+A A ++ +TG+ GKTT Sbjct: 61 ATAILLED--MPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHLILVGVTGTNGKTTI 118 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168 +L + + + +Y VP V + Sbjct: 119 ATLLYNMFRRMGHKCGLLSTVCNYIEDKAVPADHTTPDPIELNALLSEMVKAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + ++ A+ T + HL E +AK F+GL K N D Sbjct: 179 CSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A T+ ++ ADF + + + ++L+ EV I Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIRTLADFSAKILECHFDG----MELEVNGKEVNVQFI 290 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L G +L D + + ALS H GR + + + +A Sbjct: 291 GKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFHSPNGYTAIVDYAHTPDA 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + A VL +G+G I V G G L ++ V ++ Sbjct: 351 LENVLNAIHEVL-----NGKGHVITVCGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401 Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L V GDV+++ K Sbjct: 402 DNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVILIAGKG 457 >gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 499 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 82/458 (17%), Positives = 168/458 (36%), Gaps = 47/458 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 Q V I DSR + F A++G H DG D+I A+ G ++V S+ Sbjct: 30 EQCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESLSDE- 88 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V D A+ LA R + TI+ +TG+ GKTTT + + + A Sbjct: 89 VAWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALF 148 Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + IG + R VD + +S ++ + + + Sbjct: 149 STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFAL 208 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL ++ +AK +F+ L +N DD ++ A Sbjct: 209 ALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSPDAYALVNADDRNGSVMVQNCAA----H 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++++ +AD+ + Q + S + + + EV +G + A N+ G+ +L Sbjct: 265 LHTYAMRSHADYMAQLLGQYVDGSTLLLDNE----EVEIKLVGSYNAYNVTAVYGVARLL 320 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D+D ++ + + G+ A +G+ ++D ++ + ++L +S Sbjct: 321 LPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALE-----NLLKTVSEL 375 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417 + V+G G ++ H++L+ + + + + Sbjct: 376 NASQVYVVVGA----GGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLEG 431 Query: 418 LPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KS 451 +P++ ++ GD+VV+ K Sbjct: 432 IPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469 >gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] Length = 551 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 82/458 (17%), Positives = 152/458 (33%), Gaps = 44/458 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + N +++DSR P+ F A G + G F+ A+ +GA VV + + + Sbjct: 24 GAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ----VLPN 79 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 +P V + A L+ + + ++ +TG+ GKTT M ++ Sbjct: 80 CPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGKTTVSWMTRALMAKSGYRTG 139 Query: 139 CIGSYNNHIG---------VPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRP 184 +G+ G P + +S + + Sbjct: 140 LLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRAAALPL 199 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T I HL AKA I + ++ GTI L+ +D L + A Sbjct: 200 DCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAASLASLVPAE-- 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +G + +A+ + + + VQ QG+ M++ +G H +N L L Sbjct: 258 CRLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAALAAGL 317 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + +AL F P GR RC + F +D ++ + S L + Sbjct: 318 AWKVPFLSMAEALEEFRPVPGR--MERCTWGEPFDIFVDYAHTPDALS-----RALCSLR 370 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420 GR I V G G + L + + S + + + Sbjct: 371 GLTRGRLICVFGA----GGDRDATKRPLLGRAASQADVAIVTSDNPRSENPEKIIQQICD 426 Query: 421 SIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451 + E + GD++++ K Sbjct: 427 GVPAQQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKG 464 >gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] Length = 493 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 74/480 (15%), Positives = 145/480 (30%), Gaps = 47/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + +++DSR+I + F A+ G DG FI A+ + Sbjct: 1 MMLLRDLL----APWFPYAGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGS 116 GA V+V+TD + G + + ++ +A + I+ ITG+ Sbjct: 57 GATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGT 116 Query: 117 VGKTTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 GKT+T ++ + + + G+ + D Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFADKGV 176 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ V +AV T + HL +E A AK +F Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHG 236 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D L ++ +S F + + + + ++ Sbjct: 237 LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATLVWPEGEVD 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N+L L + + D+ + P GR +R+ A N Sbjct: 297 IRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADNITLVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L+ + H G V G G L + Sbjct: 357 AHTPDA-------IEQALNALRRHCAGELWCVFG----CGGDRDKGKRPLMGQAAEQCAD 405 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + L + + GDV+++ K Sbjct: 406 RIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKG 465 >gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis N1568] Length = 492 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVCRLKKDCPDLAVYSYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] Length = 531 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 85/488 (17%), Positives = 147/488 (30%), Gaps = 67/488 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L+ P I +SR + PQ F AIKG DGH F+ AV+KGA VV Sbjct: 18 VLEITGAQ---GDPDVI--SIQYNSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVV 72 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 + A + + V V D AL +A R K + ITG+ GKTT Sbjct: 73 TEEPVEA---PIGVAVIRVKDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAE 129 Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171 L + +G+ ++ + V I E+ SH Sbjct: 130 AMLGAAGCKVGIVGTVSSRWPGHEKESSVTTPESLELQETLARMVDAGVTHAIIEV-SSH 188 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDS 230 + V T I HL +E AK +F+ L + + Sbjct: 189 ALTQSRPAFC-QFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVIN 247 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + A + G ++ + + K ++ ++ + +G Sbjct: 248 LDDPQGAVLCREVKTPVLCTGLTEGSSIRSIDVKAGADGLKGVMETPAGELVFESPAVGR 307 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N++ G+ ++ L+ GR ++ L++ F + +A Sbjct: 308 HNLYNLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKVENGLDRHVFVDYAHTPDA-- 365 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407 +VL + + + I V G G + + V ++ Sbjct: 366 -----LENVLEALRRVSKAKIITVFG----CGGDRDKGKRPKMGAAAARHSDLVVVTSDN 416 Query: 408 --GFHVLALKDALPRSIHVH--------------------YSETMDGLFLFIQSSLVDGD 445 A+ D + I L S GD Sbjct: 417 PRSEDPEAIIDDILPGISGEGAQRLNASYCMMCSRKSAFMVEPDRRKAILTAIMSSGPGD 476 Query: 446 VVVV--KS 451 +V++ K Sbjct: 477 LVLIAGKG 484 >gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium wasabiae WPP163] gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae WPP163] Length = 495 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 136/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWVQDTPELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + + G++ +PV + ++ L+ LA + + I + Sbjct: 61 AAIVAEAEGETADGTVREMHGVPVIYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAEHRVGQMIIN 240 Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + E+ Sbjct: 241 ADDEVGLRWLAKLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G NML+ L + L +D + A S P GR + + Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCLGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V + DVV++ K Sbjct: 410 VVTDDNPRSEEPQAIVTDILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKG 467 >gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Heliobacillus mobilis] Length = 528 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 88/462 (19%), Positives = 156/462 (33%), Gaps = 50/462 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ ++G++ DSR +AP FF I G DGH+F AV+ GA ++VV L Sbjct: 52 PKQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVER-----FVDLK 106 Query: 83 IPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P V AL A +I +TG+ GKTTT M+ L + + I Sbjct: 107 VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVI 166 Query: 141 GSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 G+ N +G + LA M D + + +S + V Sbjct: 167 GTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVV-MEVSSHSLDQHRVLGVNFD 225 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFE---GLEKTGTIFLNYDDSFFELLKAKSHAL 242 IA T + HL +E +AK ++F E I + + + Sbjct: 226 IAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSADYFLQV 285 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 ++G ++A + + W + + VQ G ++++ G N L + Sbjct: 286 SSVPAVTYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFNISNSLAAFTV 345 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 I+ + + ++AL GR + + + ++VL+ Sbjct: 346 GWIVGMEPEQIVEALQSLRGVPGRFESVDQGQPFSVIVDYAHTPDG-------LVNVLNT 398 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKD 416 EG+ + V G G + + ++ + ++D Sbjct: 399 AEALAEGKIVTVFG----CGGDRDRTKRPIMGAVVAEMSDIAVVTSDNPRTENPHRIIED 454 Query: 417 ALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 LP I S GD+V++ K Sbjct: 455 ILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDLVMIAGKG 496 >gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 486 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 83/460 (18%), Positives = 153/460 (33%), Gaps = 40/460 (8%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 P + G+ IDSR + +F ++G +DGH+FI + KGA +V + + Sbjct: 5 QIFENAPDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSKPV-- 62 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 I V++V LN++A + +TG+ GK+T ++ S Sbjct: 63 EHMKKGIAYIQVENVNRTLNRVASLFYGHPSRNMKVFGVTGTNGKSTITSIIKDVYSHFA 122 Query: 135 KTYA-------------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + + VD L +S G Sbjct: 123 PCGYIGTISISYGEVTLPPSLTTPDAILIHKTMKDMVDAGMQAVALEVSSHGLELGRVQS 182 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V +AV + + HL IE AK ++F L+K G LN DD++ + L + A Sbjct: 183 VDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKDGVAVLNADDAYVDQLADATDA 242 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + ++G +A +Q + S + G+ EVV + + + N+L + Sbjct: 243 ----RVVTYGIDHHASYQAENIRIEKTGSRFTLVHDGEHYEVVTNLVALYNIYNLLGAVA 298 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ + + L+ EGR +R + P M+ Sbjct: 299 AMAESGIPIAKQLPYLNEIRQIEGRMERIDEGQLFNVIVD----FAHTPDGMEKVFEYAK 354 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 I+ G IAV G + + ++ + L+ + + Sbjct: 355 DITEEGHS-IIAVFGSAG----KRDTKKRKVFGEIASRYCDSIILTEDDPRDEDPREIAN 409 Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I + + E S D V++ K Sbjct: 410 EIKSGISDTNNIFIEDRYAAIRQAIESANMKDTVLILGKG 449 >gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] Length = 481 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 81/472 (17%), Positives = 160/472 (33%), Gaps = 48/472 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++ + ++ I + I DSR I + F A+ G DGH++I AV GA +V Sbjct: 3 EIFENVEYEVINKGKDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMV 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEML 126 + + ++ + VD++ L +A + K II ITG+ GKTT+ +L Sbjct: 63 IAEKKDI-TVADKDVTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYIL 121 Query: 127 TIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFELGMSHLGE 174 L + + + V + + V++ I E+ SH E Sbjct: 122 DSMLENTSRIGTIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEV-SSHALE 180 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 I + ++ + T + HL +E +AK ++F L +N DDS+ E Sbjct: 181 IGRV-DMLEFDSVMFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAVNIDDSYGER 239 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + K+ S+ K++D + + + + V QG +G + Sbjct: 240 I-----YNSNKSYKSYSIIKDSDLKGKIEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLY 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L +G++ L D+ I+ + GR + + + N Sbjct: 295 NLLGCIGVLLNLGFDIRDIIERVKRVGYVPGRFELVNEGQDFRVIVDYAHTDNG------ 348 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409 ++L + E R I + G G + + V ++ Sbjct: 349 -LENILETVRKITEKRVITIFGA----GGDRDNTKRPKMARAAAKYSDFVIITSDNPRTE 403 Query: 410 HVLALKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + D +++ K Sbjct: 404 DPAEITRQVEKGLTDIDFPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKG 455 >gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CDC 684] gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CDC 684] Length = 246 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 7/230 (3%) Query: 1 MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58 M + + I G ++G+ IDS++I F I DGH+++ Sbjct: 1 MIQM-NLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVK 57 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ GA + + IP+ VDD L AL +LA R +I ITGS G Sbjct: 58 EAMDNGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT K+++ L S + + G++N+ IG+PLT+ M D + I E+GMS G Sbjct: 116 KTTAKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIE 175 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 176 RFTWNSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 225 >gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] Length = 493 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 160/476 (33%), Gaps = 46/476 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + N +++DSR++ P + F AI G DG +I AVQ+GA + Sbjct: 2 LLRDLLAPWFHYAGSESFNKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASL 61 Query: 70 VNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+TD S G + L+ LA A S + ++ +TG+ GKT+ + Sbjct: 62 VHTDDPESHGKCVDDEGKQILFFQLNRQLSALAAQAYPLSAERLKLVGVTGTNGKTSITQ 121 Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMS 170 ++ ++ + K++ N G + D + + +S Sbjct: 122 LMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G I+ V +AV T ++ HL ++ AK + + +N DD Sbjct: 182 SHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRL-FNFPSLSSGLINLDDE 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + A+ + G+ + + + + ++ G ++ Sbjct: 241 IGKQWLAEHDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAKLVWPGGHADLCSP 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N++ LG + +L D+ + + + GR +R+ + + Sbjct: 301 LLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERFTTPDDVTIVVDYAHTP 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A L + H +G + G G L + V + Sbjct: 361 DA-------IEQALKALRGHCDGELWCLFG----CGGDRDKGKRPLMAQAAEKYADRVVV 409 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + L + + ++ GD+V++ K Sbjct: 410 TSDNARSEQPDVIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKG 465 >gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] Length = 494 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 76/460 (16%), Positives = 149/460 (32%), Gaps = 42/460 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVA 76 + V + +DSR+I + F AI G DG FI AV +GA VV + Sbjct: 21 ELDAIAVEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGL 80 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131 ++PV V ++ L++LA +I +TG+ GKTT +++ L Sbjct: 81 VEWLNAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140 Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIF-ELGMSHLGEIRFLTHLV 182 + + + N G + + R + + ++ + +S G ++ + Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKAL 200 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + V T ++ HL +EE A AK +F + + D+ + S+A+ Sbjct: 201 NFEVGVFTNLSRDHLDYHGTMEEYALAKKRLFTQHKCKHAVINVDDEVGKAWMADLSNAI 260 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + ++ IG A N+L+ Sbjct: 261 AVSLLPLS--DYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFAT 318 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D T + S P GR + ++ + +A L+ Sbjct: 319 LLSLGIDKQTLVDTASQLQPVIGRMELFQVPSKAKVVVDYAHTPDA-------LEKALAA 371 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H G+ A+ G G + + V + + +S + Sbjct: 372 LRVHCSGKLWAIFG----CGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKD 427 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L F D++++ K Sbjct: 428 MLAGLSEPESAFVEHDRYQAVKFALEQAGSNDIILLAGKG 467 >gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] Length = 484 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 76/464 (16%), Positives = 149/464 (32%), Gaps = 60/464 (12%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V G++ ++ + F +KG +DGH + KGA ++V + D+ Sbjct: 17 GTQNAVVTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDIKCG--- 73 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138 D+ L +L + + ++A+TG+ GKTTT + L+++ K Sbjct: 74 ---KQLVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCG 130 Query: 139 CIGSYNNH----------IGVP----------LTLARMPVDVDFGIFELGMSHLGEIRFL 178 C+G+ N G P + D+ + E S ++ Sbjct: 131 CVGTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVME--ASSQALDQYR 188 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 R +A T + HL +E AK + T+ + + + Sbjct: 189 IGDERIAVAGFTNLTRDHLDYHGTMENYFQAKRRV-------FTMCKTAVINIDDEYGKR 241 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--HMAQNM 296 ++ NAD+ + + + + + + QN Sbjct: 242 LAQEFSDIAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQNS 301 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + +V+ L D+ KALS +GR + +G FT+I + + + A Sbjct: 302 LCAIAMVTALGFDMTECAKALSDLDGVDGRM----NVVYRGDFTVITDYAHTDDA----L 353 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------- 407 I VLS + P +GR I V G + + N + ++ Sbjct: 354 IKVLSTLKPLTKGRLICVFGAAG----DRDKEKRPMMAKAAEDNADILVITSDNPAHENP 409 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + + DV+ + Sbjct: 410 DEIIREVMTGISGKKPCRCITDRREAIAYALDTARKDDVIALCG 453 >gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] Length = 521 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 91/497 (18%), Positives = 151/497 (30%), Gaps = 64/497 (12%) Query: 6 TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T DLL + +IG + G++ DSR + P F AI+G H DGH ++ HA++ Sbjct: 4 TLRDLL--VGLETIGPPTDLDIPILGLAYDSRQVRPGWLFVAIRGFHVDGHQYVDHALKA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS----- 116 GA VVV+ +L +P+ V D AL LA I ITG+ Sbjct: 62 GAVAVVVDVRHWNGPTTLGVPLITVADSRVALAPLAANFYAHPAAHLRTIGITGTKGKST 121 Query: 117 ---------VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----LARMPVDVDFG 163 G M++ I + + P + + Sbjct: 122 TTDLVSQVLEGGGLRTGMISTVDFKIGARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSYA 181 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA-------------SAK 210 + E L V +AV + HL E+ ++ Sbjct: 182 VLESTSHALSPYWNRLGNVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSE 241 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 A +G ++ + A +FG AD + S Sbjct: 242 ASCHQGDRVERPVWAIANADDPNCQFFLDAAPSYARRLTFGVRAAADVRAHAVASGPSGS 301 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + V + G N L L + ++ AI AL GR + Sbjct: 302 HLRVTTPWGEAALHLQIPGSFNVSNALAALSVALSQGVPLERAITALEAVPGIRGRMQPI 361 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 L Q F ++D ++N + VLS + P +GR IAV G E Sbjct: 362 H--LGQPFDVIVDYAHNPDSFE-----QVLSMLRPLTKGRMIAVFGSAGE----RDRAKR 410 Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-----VHYSETMDGLFLF 436 + ++ + L+ + + R+ Sbjct: 411 SVQGEIAGRYADLLVLTDEDPRGEDPAAIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHV 470 Query: 437 IQSSLVDGDVVVV--KS 451 ++ GD+V++ K Sbjct: 471 AIAAAQPGDLVLLLGKG 487 >gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 487 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 81/460 (17%), Positives = 157/460 (34%), Gaps = 43/460 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G + DG I A+++GA V + + Sbjct: 11 HTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLVAQALDALGQRC 130 Query: 138 ---------ACIGSYNNHIGVPLTL------ARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + P + + + + +S G + + Sbjct: 131 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVA-MEVSSHGLDQGRAAAL 189 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV+T ++ HL +E A+AKA++ +N DD F L A Sbjct: 190 AFDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWLDLKCRVINLDDDFGRELAAVKQES 248 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + T +A R K + + + +G N+L +G Sbjct: 249 RLITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGA 306 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L +D +KAL GR +R A + +A VL Sbjct: 307 LLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEA 359 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413 + PH +GR + + G G L + VW++ + Sbjct: 360 LRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDD 415 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + V + E + +S DVVV+ K Sbjct: 416 IRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455 >gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 252 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS+++ F I DGH+++ A+ Sbjct: 10 MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHEYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D +F I E+GMS G Sbjct: 126 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGCRIIERFTW 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 186 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 231 >gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040] gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040] Length = 494 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 76/476 (15%), Positives = 149/476 (31%), Gaps = 41/476 (8%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P L G + + G+++DSR + F A+ G G F+ Sbjct: 1 MTQRPALKLSQL-----GLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVE 55 Query: 59 HAVQKGAGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 + +GA ++ + +I + + +D AL+ A + A+T Sbjct: 56 QVLDQGAVAILTDAKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVT 115 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFG 163 G+ GKT+ L + + + +G+ LA + + G Sbjct: 116 GTNGKTSVSTFLRMIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAG 175 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + S G + V+ A T HL E +AKA +F + Sbjct: 176 VTHAAMEASSHGLDQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSED 235 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + A + I + G+ D L + + + + Sbjct: 236 GVAVINMTDPKGAEMRAIAAARGQEIITVGR-GLGDIALMGMRVDATGQDIRFTWHDRPF 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + IG A+N+L+ G+ D + L GR + N Sbjct: 295 AKRLNLIGGFQAENVLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGA-TVF 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + + + + PH GR +A++G G + L + N Sbjct: 354 VDYAHTPDAVAT-----AIKALRPHVLGRLVAIVGA----GGDRDATKRPLMGAAAQDNA 404 Query: 402 SHVWLSG-----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V ++ A++ A + + L L GD +++ Sbjct: 405 DAVIVTDDNPRSEDPAAIRAAVMGGAPDALNVGDRAEAILRGVDMLEAGDALLICG 460 >gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 137/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + A+ G++ +PV + ++ L+ LA + + I + Sbjct: 61 AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVDQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFADHRVGQMIIN 240 Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + E+ Sbjct: 241 ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G NML+ L + L +D + A + P GR + + Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V + DVV+V K Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467 >gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis 053442] gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis 053442] Length = 492 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 77/447 (17%), Positives = 146/447 (32%), Gaps = 39/447 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHY 426 G G L ++ V ++ + + A+P V Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPERVE- 438 Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 439 -ADRAAAIRYAVERAAANDIILIAGKG 464 >gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis 961-5945] gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis G2136] Length = 492 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] Length = 474 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 85/464 (18%), Positives = 147/464 (31%), Gaps = 63/464 (13%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVA 76 P V GI+ DSR + P F AI+G + +GHDFI A+ +GA +V D+ Sbjct: 13 PTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVGTQDL-- 70 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134 L +P V D AL LA A ++ ITG+ GKTT + L Sbjct: 71 ---ELPVPYLKVADPRSALADLAAAFWGHPAKMLQLVGITGTKGKTTVTVLAHHLLQFAA 127 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGM--------------SHLGEIRFL 178 I + +G + E+ S Sbjct: 128 PPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVLEVSSHALALER 187 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + V T ++ HL +E +AK + + L Sbjct: 188 VRGLEYEVGVWTNLSEDHLDFHGSMENYFAAKQTLLRRSRFGVLNREDPYYPQLPGL--- 244 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 T +S+G D+Q + + V+ + +V IG A N L Sbjct: 245 -------THWSYG--MGGDWQAENLLETAGGLHFRVRSPLGAFKVSLPMIGKFNALNALA 295 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + L + L F GR + + F +I + + + + Sbjct: 296 AMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQ----ATPFRVIVDFAHTESS----VRA 347 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 L + P GR + V+G E G ++ + V+ H +A+ Sbjct: 348 ALETLRPTTRGRLVIVVGAAGERGAERRTG---IGRAAGELADLAVFTEEDHRSENLEAI 404 Query: 419 -------PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 +++ Y+ + + GD +++ K Sbjct: 405 LQTMAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKG 448 >gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae 642] Length = 487 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 82/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSIVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL + + Sbjct: 71 ITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD F L A Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSDLKCRVINLDDDFGRELAAIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +KAL GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKALPKLEGPVGRMQRLGGAEKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + E + + DVVV+ K Sbjct: 417 RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKG 455 >gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] Length = 501 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 68/462 (14%), Positives = 144/462 (31%), Gaps = 52/462 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-------- 82 ++DSR + + F A+KG DG FI +A+++GA +++ + L Sbjct: 25 TLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQFARYNL 84 Query: 83 ----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V + L+ +A + K +I ITG+ GKTTT ++L Sbjct: 85 DRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ I + +S G ++ Sbjct: 143 GHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQYRVE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ +A+ T ++ HL I A +T LN DD + + Sbjct: 203 ALQYDLAIFTNLSRDHLDYHHSI-AAYEAAKFRLFNALQTKAQVLNADDQVAQNWLSMLP 261 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + S++ + K + +++E + + + G N+L+ L Sbjct: 262 NAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSGAFNVTNILLAL 321 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D+ + S GR ++ ++ ++ + + A L Sbjct: 322 AGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTPDA----LQKAL 377 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 H +G+ V G G L ++ V ++ + Sbjct: 378 QAARLHTKGKLFCVFG----CGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQHKIV 433 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + D++++ K Sbjct: 434 AEIMQGFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKG 475 >gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] Length = 499 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 84/478 (17%), Positives = 158/478 (33%), Gaps = 51/478 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L++ I ++ I DSR + F I+G + DGH +I A++KG Sbjct: 1 MKISELIKDITPVETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ D+ + S I V+D + LA ++I +TG+ GKTTT Sbjct: 61 AVAVVIEKDL--EVYSEDITYIRVNDSRETMGYLASTFYNYPLKNLSLIGVTGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFE 166 ++ L +G+ N IG + V + E Sbjct: 119 TYLIKAILEEAGFNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARMVDSGVTHAVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH +++ + + I V T I+ HL ++E AK+ +F LE G +N Sbjct: 179 V-SSHALDLKRVEGM-EFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPGGWAVVN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DDS + + I ++G + D + + V + +S ++ + Sbjct: 237 IDDSHSDKIIK----STTGNIITYGIEGDCDLKANEINLSPTGVSYHVSGK-ESFKIDLN 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L + +L + +T + GR + + + Sbjct: 292 LTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELVNEGQDFAVVVDYAHTP 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL +G I V G G L ++ + + Sbjct: 352 DG-------MENVLETAREFVKGNIIVVFG----CGGDRDKGKRPLMGKIATQLGDYCII 400 Query: 407 SGFHVL-----ALKDALPRSIHVHYS--------ETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + + I +S D+V++ Sbjct: 401 TSDNPRSEDPMEIIKDIEKGIQEEVISDTPYVKEPDRRKAIFSAINSARKDDMVIIFG 458 >gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] Length = 488 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 156/474 (32%), Gaps = 47/474 (9%) Query: 7 FHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL+QA++ + V ++ D+R + P F AI G + DGH FI A+ KG Sbjct: 3 ASDLIQALKYKRLSQSEFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIAKG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +++ + ++PV V D A+ LA +I +TG+ GKTT Sbjct: 63 AQMIIAQEPV-----ETTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKTTV 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 ++ + + IG+ + D + + Sbjct: 118 THLIEEVFHDLGEGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANVKTVSME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + ++ + I V T HL+ + + AK+ +F + T + Sbjct: 178 VSSIALVQGRVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSG-KTAV 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + I ++G AD K + ++ + + V H I Sbjct: 237 MNIDDPVGREFIDYTTSNILTYGIKHQADIYADHIKITIHGTEFDLHVFDEVKHVKTHLI 296 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +G A V + +LS +GR + + + Sbjct: 297 GEFNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNTGVSVIVDYAHTPDG 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++VL ++ E ++G G + +++ N +H L+ Sbjct: 357 -------LLNVLETLNDFAEQDTYCIVG----CGGDRDAQKRPQMAKIAVDNSTHAILTE 405 Query: 409 FH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + GD +++ K Sbjct: 406 DNPRTEDPHKIMDDMLAGIDSDQATVIF-NRREAIQYAVNRAKPGDAIIIAGKG 458 >gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] Length = 489 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 156/474 (32%), Gaps = 51/474 (10%) Query: 6 TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T DLL I GH+ + + I+ DSR + P F A+ G DG FI A+ KG Sbjct: 10 TMADLLALIAGHARLERGGSVPIAAITSDSRKVGPGTLFVAVPGTKADGARFIPDALAKG 69 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V++ + + +P+ DV +L A R TI+A+TG+ GKT+ E Sbjct: 70 AAAVLME--PTGAPPDMDVPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTSVAE 127 Query: 125 MLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDV-----DFGIFEL--GMS 170 + + + A + +++ G+ GI + S Sbjct: 128 FVRQIWAHLGIPAAYMGTLGLIAPGESSYGGLTSPDPVDLHATLDRLAGAGITHMALEAS 187 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + HL +E AK + T + Sbjct: 188 SHGLDQRRLEGVRLAAGGFTNLGRDHLDYHPTVEAYFHAKLRL-------FTELMPDGAP 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI 288 L A A + + G A K + + E++ + Sbjct: 241 AIAALDAPYGATTLAFARTRGLPTFAIGATGDLKVTEVVAEGTSQRIRFADRPEILLPLV 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N L+ +V+ +D A+ AL GR + R + +D ++ Sbjct: 301 GRFQADNALLAASLVAAGGVPLDDALSALPHLKGVPGRLE--RIGHDPARPVFVDYAHKP 358 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 VL + GR IA+ G G L ++ V ++ Sbjct: 359 EALET-----VLDTLRAATAGRLIALFG----CGGDRDRGKRPLMGAIAAAKADVVIVTD 409 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + A P ++ + + + + GDV++V K Sbjct: 410 DNPRSEDPSAIRAEILAAAPGALEIGA---REEAIRAGVAMMGAGDVLLVAGKG 460 >gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] Length = 497 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 144/472 (30%), Gaps = 44/472 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+ + ++ I DSR F AIKG DGHD+I A KG+ Sbjct: 7 LKDIEYISNIK-ESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYIKGAYDKGSR 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 + ++N D+ ++ V D L++++ K ++ ITG+ GKTT Sbjct: 66 VFIINHDLEIEDDAIK---IIVPDSRRVLSRMSAIFFSEPTKKLKVVGITGTKGKTTISN 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMS 170 + L+ IG+ + +D + +S Sbjct: 123 YIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEMLDAGVECVAMEVS 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 G + + I V T ++P H+ E K+ +F + + + Sbjct: 183 SSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFGLCKYGIINVDDEN 242 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + S K+ N + + + ++ Sbjct: 243 AQYMVDHAKCPTCGFSIDKESNIKAGNIELTRSSASLGVD--FDYKLKDQDTVRTHICSP 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +G+ D D ++ALS R T+I + + Sbjct: 301 GEFSIYNALAVIGVCDHFGIDRDKMLEALSDAK----VDGRVEVIPVLDNATVILDYAHN 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + +VL + + R I V G + G + +L +V + + + Sbjct: 357 GLS----LENVLDTLLKYDHNRMICVYGSI---GGRAAIRRKELGDVAARLCDVSIITTD 409 Query: 408 ---GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + D + S VH DGD+V+V Sbjct: 410 NPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGDMVLVTG 461 >gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica ST-640] gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica 020-06] Length = 492 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP + E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464 >gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] Length = 505 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 156/481 (32%), Gaps = 57/481 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P FFA+ G +DGHDFI A+Q G+ + Sbjct: 14 QDLIKYVKGSL-----DLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + DM S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVHSRDM--DFYSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L I + G + V + I Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V AV T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + ++ K+ KS ADF + + + + E +G Sbjct: 244 GFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFINEKIDSTRFEFYYKGVKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIV-DKLVCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L +S + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQISDIYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 L + + + + + + S GD+VVV K Sbjct: 414 LLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVVLGK 473 Query: 451 S 451 Sbjct: 474 G 474 >gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] Length = 493 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 77/453 (16%), Positives = 148/453 (32%), Gaps = 36/453 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79 Q + G+++DSR + F A+ G G +FI +A++ GA ++ + +G Sbjct: 20 QATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAAGAQLAATELG 79 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--- 136 + + DD AL + A T++A+TG+ GKT+ + + + Sbjct: 80 ASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQIWTLLGHEAIN 139 Query: 137 --------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHI 186 + + G+ + S G + V Sbjct: 140 LGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSHGLDQRRLDGVTLAA 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T HL + E+ +AKA +F + + D+ + A Sbjct: 200 AGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDMAAIAEARNCP 259 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G+ + D L + S + G IG A+N+++ +V Sbjct: 260 VITVGR-DSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQAENVMLAAALVIAC 318 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D L GR + N +D ++ + + L + PH Sbjct: 319 GEDPQHVFDTLEHLSTVRGRMQLAGTRDNGA-TVFVDYAHTPDAIAT-----ALKALRPH 372 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA-LPR 420 GR IA++G G + L + N V+++ +++ A L Sbjct: 373 VVGRLIAIVGA----GGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAVLLG 428 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L +L GD +++ K Sbjct: 429 APDAIEVGDRAEAILRGVDALGPGDALLIAGKG 461 >gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Western North America USA6153] gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Australia 94] gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] Length = 243 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 1 MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 59 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D + I E+GMS G Sbjct: 117 KDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222 >gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] Length = 500 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 78/447 (17%), Positives = 135/447 (30%), Gaps = 46/447 (10%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 S F I G +DGH F AVQ+GA +++ + L +P V++ Sbjct: 37 SHQCEENSLFCCIPGEKHDGHSFASDAVQRGAAVLLCQHAL-----PLQVPQIIVENSRW 91 Query: 94 ALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148 A+ A A + ITG+ GKTT+ M+ L + +G+ G Sbjct: 92 AMGFAAAAVYGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKE 151 Query: 149 ------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196 V +ARM + + + S G + + V T + P H Sbjct: 152 QEADRTTPESCDVQRLIARMKRNGCTSVI-MEASSHGANQGRLNGCLFQGMVFTNLTPEH 210 Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 L +E AK ++FE D + + + + + Sbjct: 211 LDYHKDMEHYFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIYGKKCLSFGLDSTRHHD 270 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + SE S +++ G N L + I + K Sbjct: 271 VQLQNFYMTLSELSMKVQFFNSDPIDITLPLTGRFNIYNALGAMAICYKMGVAPLVIKKG 330 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L GR ++Y + +A +VLS + G+ I+V G Sbjct: 331 LESMPQVPGRLEKYFFENEVCGVVDYAHTPDA-------LENVLSALREVCHGKIISVFG 383 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSE--- 428 G + L ++ + ++ + +A+ + I Sbjct: 384 H----GGERYQANRPLLGQVAARLADIIIVTMDNSRSEDPAKIAEAIEQGIASVVEAPPH 439 Query: 429 ----TMDGLFLFIQSSLVDGDVVVVKS 451 + S GDVVVV Sbjct: 440 YRILDRNEAVRTALSMAKPGDVVVVTG 466 >gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] Length = 483 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 73/457 (15%), Positives = 143/457 (31%), Gaps = 45/457 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSL 81 + G+ DSR I P + F A G DG FI +AV GA V + Sbjct: 17 DCLITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAVAYDPADFPLNCVLPE 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 S+P V ++ L +A I +TG+ GKTT L A + + A Sbjct: 77 SVPCIPVPELSTQLPNIAKQFYDNPACFLNITGVTGTNGKTTIAYQLAQAHHLLGQKAAY 136 Query: 140 IGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185 IG+ P +L + + + + +S + + + Sbjct: 137 IGTIGQGNVNELRLVDNTTPDSLCLQKLLHQYKSQDMRQVCMEVSSHALAQHRVDALEFN 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL +E A AK+ +F I D + A + Sbjct: 197 QAIFTNLTLDHLDYHHSMENYARAKSLLFARESLEWAIINQDDAYHKIMAAAIKPQVKK- 255 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G ++ D + + W + +EV + +G N L + Sbjct: 256 --LTYGIHQDCDVRAKNWSMDIYGTEIEVHSPWGKHHIKIKSLGQFNIYNSLAIFSSLLA 313 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ GR + + L+D ++ + + L ++ Sbjct: 314 ANYIPEQVVDVMAQLKAAPGRM----EIVAHSPYVLVDYAHTPDALE-----NALMTLNQ 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 +GR V G G + ++ + ++ + + Sbjct: 365 LKKGRLWVVFG----CGGDRDKTKRPIMGKVADKLADEIVITSDNPRTEEPQIIINEISK 420 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + S V + + + DV+++ K Sbjct: 421 GIALSTKVIQLVNREEAIAYALDKADENDVILIAGKG 457 >gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] Length = 491 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 74/460 (16%), Positives = 145/460 (31%), Gaps = 44/460 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 V G+S+DSR I F A++G DG FI A+ +GA +V+ T A G + Sbjct: 16 ANLDVQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIK 75 Query: 82 ---SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-IALSSIKK 135 + V + ++++A ++ +I ITG+ GKTT +L K Sbjct: 76 MHAQVAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVK 135 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV------------- 182 N G + +D EL ++ V Sbjct: 136 NAQMGTIGNGLFGQLKSSLNTTLDAISIFAELASYQQQGAQYTLMEVSSHGLDLGRVQAL 195 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + A+ T + HL + + + +N DD E+ ++ Sbjct: 196 PFYSAIFTNLTRDHLDHHGTM-ACYGLAKKRLFSEYSLQQRIINIDDPTGEMWLSEFSDA 254 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 S+GK+ N + ++ + Q + Y ++ + Sbjct: 255 -----ISYGKATNQKQYFTVKEIFYQKQGICFNFQSSWGDGQISAPFYGHFNVQNLSAVL 309 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +L G+ + ++ T + + Y P +++ A+ L Q Sbjct: 310 CQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQDITFVVD-YAHTPDALEKALQALHQ 368 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413 S GE + G + G+ + ++ S V L + + Sbjct: 369 HSQKGELICLFGCGGDRDTGKRPE------MAKVAEKLASQVILVDDNPRTEQASVIMQD 422 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + + + GD+++V K Sbjct: 423 ILAGFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKG 462 >gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M6190] gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis ES14902] Length = 492 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] Length = 493 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 151/480 (31%), Gaps = 47/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + +++DSR+I + F A+ G DG FI A+ + Sbjct: 1 MMLLRDLL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGS 116 GA V+V+TD + G + + ++ +A + I+ ITG+ Sbjct: 57 GAIAVLVHTDSIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGT 116 Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164 GKT+T ++ ++ ++ K N G + D + Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLYEFADKGV 176 Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDALRHG 236 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D L ++ +S A F + + + ++ ++ Sbjct: 237 LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQAKLVWPEGEID 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N+L L + + D+ + P GR +R+ A N Sbjct: 297 IRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTADNITLVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L+ + H G V G G L + Sbjct: 357 AHTPDA-------IEQALNALRRHCAGELWCVFG----CGGDRDKGKRPLMGQAAEQCAD 405 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + L + + GDV+++ K Sbjct: 406 RIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKG 465 >gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] Length = 507 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 136/468 (29%), Gaps = 51/468 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 Q + G++ DSR AP F A+ G H DG ++ A Q GA + + + S L Sbjct: 24 PEQDTILGLAYDSRKAAPGYLFIAVPGVHTDGRRYVADAAQHGAVVAL--GAPLPSAIDL 81 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP V+DV AL LA A + I +TG+ GKTTT +++ + + Sbjct: 82 PIPYIEVEDVRTALADLACAFYGFPARELCTIGVTGTDGKTTTSNIISTLFDAAGRRTGM 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFG---------IFELGMSHL-------GEIRFLTHLVR 183 + + N + + E+ +H G Sbjct: 142 MTTANFKLNGQEWANATRQSTLEALEIQEFLRKMVEMQATHAVIESTSHGLELQRVRGCA 201 Query: 184 PHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + V+T I HL ++ A + +K + + Sbjct: 202 FDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDPEQDKGQGYRKVAILNKDDSSYEVL 261 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I +G +A + + ++ + L ++ IG N L Sbjct: 262 KPYCRVPILDYGIETDAAVRAVDLHLQASRTAFRLILPDAECQIETPLIGRFNVSNCLAA 321 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + +D + L+ GR + N + ++ V Sbjct: 322 IATAYSQGIPLDVITQTLATIKGVPGRMEHIDEKQNFSVIVDYAHTADS-------LQKV 374 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-------- 411 L+ + P G+ + V G E + ++ ++ Sbjct: 375 LAILRPVTTGKLMVVFGSAGE----RDRQKRPVMGSVAAQMSDFFVITDEDPRDEDRESI 430 Query: 412 -LALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ S GD V++ K Sbjct: 431 LREIAVGAEQAGKQEGSDFLCIADRREAIATAFSRAQPGDTVLLAGKG 478 >gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] Length = 492 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 83/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D+ EL+ +YS+G S N Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCSDLAVYSYGFSGN 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q +G AQN+ + ++ D + Sbjct: 269 ADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGCIALLCANGYPFDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAVPTPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERATANDIILIAGKG 464 >gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] Length = 505 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 156/481 (32%), Gaps = 57/481 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P FFA+ G +DGHDFI A+Q G+ + Sbjct: 14 QDLIKYVKGSL-----DLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + DM S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVHSRDM--DFYSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L I + G + V + I Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V AV T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + ++ K+ KS ADF + + + + E +G Sbjct: 244 GFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFIDEKIDSTRFEFYYKGVKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIV-DKLVCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L +S + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQISDIYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 L + + + + + + S GD+VVV K Sbjct: 414 LLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVVLGK 473 Query: 451 S 451 Sbjct: 474 G 474 >gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 301 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 13/311 (4%) Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + G+ ELGMS GE+ + + + +AVIT I H+ E I K I +GL + Sbjct: 1 DEIGVIELGMSEPGELTVIAGIAQIQMAVITNIGITHIEQLGSQENIFREKLSIQDGLTE 60 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G +FLN D + L K+ A +G +N ++ + + + Sbjct: 61 HGILFLNGD----DELLKKTTARDGFETIYYGTGENCHYRAVDVRLENGYPVFTAVCGDE 116 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + V +G H N +++L + S+ ++ A K L+ F + + + G Sbjct: 117 QVPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAAKQLAEFTG----FQNRQQIYHTGGM 172 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T+ID++YNA+P SMKA + VL+ I RR+AVL DM E+G S +H ++ ++ + Sbjct: 173 TIIDDTYNASPVSMKAGLEVLNSI--EHSRRRVAVLADMKELGPDSPRYHYEIGTYIAAH 230 Query: 400 NISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456 + V + G + + I V+ + L ++++ L +GD V+ K SNS Sbjct: 231 PVDKVAVLGEPAKEIARGVREQAPHILVYEFMDREPLVEWLKTELREGDAVLFKGSNSME 290 Query: 457 FYRLINLLLEE 467 ++ + LE+ Sbjct: 291 LGKVAAVFLEK 301 >gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CNEVA-9066] gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. A1055] gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Kruger B] Length = 243 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 1 MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 59 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D + I E+GMS G Sbjct: 117 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222 >gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M0579] gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240149] gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis NZ-05/33] Length = 492 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 84/491 (17%), Positives = 149/491 (30%), Gaps = 63/491 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L Q + ++ G V+G+ DSR + P FFA++G DGH FI A+ +G Sbjct: 1 MNISVLCQILDPSAVSGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 A VV+ + + V D A+ A A ++ ITG+ GKTT Sbjct: 61 AVAVVMESPH---TLPTGVTGILVKDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTV 117 Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMP-------------VDVDFGIFE 166 ++ L + + +P + D + E Sbjct: 118 SYLVESILLAAGYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLE 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + L + R + V T + P HL +E AK +F GL + Sbjct: 178 VSSHSLEQRRVDGVW--FDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVV 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + G + D ++ + + Sbjct: 236 ANSDDSW---GARLGAMLPAVIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQSP 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G + QN+L G+ + L T KAL+ GR N+ ++ + Sbjct: 293 LVGDYNLQNLLCAAGVGAALDMVPATIAKALAQAPQVPGR---LESIANERGALVLVDYA 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL + R + V G G + + ++ L Sbjct: 350 HTGDA----LENVLVTLRQLQPRRLLCVFG----CGGDRDAGKRPVMGEIAARLADVAIL 401 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE-------------------TMDGLFLFIQSSLV 442 + + A+ + + + E F S L Sbjct: 402 TSDNPRSEDPLAIMQQVESGLRRIHEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQ 461 Query: 443 DGDVVVV--KS 451 DV++V K Sbjct: 462 PDDVLLVAGKG 472 >gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis CU385] gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] Length = 492 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + + G+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAVRYAVEQAAANDIILIAGKG 464 >gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] Length = 489 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 84/481 (17%), Positives = 153/481 (31%), Gaps = 49/481 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L++ + I + + GI S+ +AP F A KG +DG +I AV+ G Sbjct: 1 MKLKRLIKDLPNAEIKGSKEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYIAEAVETG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122 A V+ SL + +V KL A R + ++ +TG+ GKTT Sbjct: 61 AAAVL----NDIFDPSLKVSQIIHPNVAVVEGKLVSAFYHRPGEELLMVGVTGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARM-------PVDVDFGIFE 166 ++ S++ IG+ IG P + E Sbjct: 117 SYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREMVNQRSQAAVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + L + R + + T ++ HL ++ K ++F L+ N Sbjct: 177 VTSHALHQGRVSEIS--FDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSLDPEAKKRKN 234 Query: 227 YDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 Y + + K I ++G + +AD + + + +E + QGK Sbjct: 235 YPKAAVVNIDDPWFEKIIDGCRVPIITYGIANHADLRAEEIQLGAEGIVYTLVHQGKRYP 294 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V IG N L T+G L ++ + A+ F P GR + F Sbjct: 295 VSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPGRLEYVPNKRGLKLFVDF 354 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A +VL+ + +G+ I V G G + ++ Sbjct: 355 AHTPDA-------LKNVLNCLKELTQGKLIVVFG----CGGDRDPYKRSQMGRIAEEFSD 403 Query: 403 HVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 ++ + + + E DVV++ Sbjct: 404 LAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPEDVVLIAG-R 462 Query: 454 S 454 Sbjct: 463 G 463 >gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 138/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + A+ G++ +PV + ++ L+ LA + + I + Sbjct: 61 AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGEHRVGQMIIN 240 Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + E+ Sbjct: 241 ADDEVGLRWLAQLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G NML+ L + L +D + A S P GR + ++ Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V + DVV+V K Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467 >gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 252 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 10 MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D + I E+GMS G Sbjct: 126 KDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 185 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 186 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 231 >gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum DSM 6724] gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum DSM 6724] Length = 492 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 85/479 (17%), Positives = 160/479 (33%), Gaps = 50/479 (10%) Query: 4 LWTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + ++++ ++ + I G + GI+ DSR + FFA+ G DG +I A+ Sbjct: 1 MRKLKEIVEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAI 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGK 119 KGA V + + V ++ L+K+++ I+ +TG+ GK Sbjct: 61 SKGARAVFFE--GEVDNFERDVALIRVKEIFDVLSKVSLYFYNFPSKHLNIVGVTGTNGK 118 Query: 120 TTTKEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGIF 165 TTT +L SY ++ P V+ Sbjct: 119 TTTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMVNKGVKFL 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S V V T + HL +E+ AK +IF+ LE G + Sbjct: 179 AMEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHLEDEGFAVI 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N D+ + + + + + D L+K++ + +E+ + Sbjct: 239 NRDNEWTKRI------NLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLGDTVIDT 292 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N+L +G++ L ++ K LS F +GR + R N + Sbjct: 293 KLRGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFIREGQNFNVIVDYAHT 352 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + +VL I +GR I V G G +S V Sbjct: 353 PDG-------LYNVLQTIKEFTKGRVIVVFG----CGGDRDPTKRGKMGEISAKLADVVI 401 Query: 406 LSGFH---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + ++ + R + Y E + + D V++ K Sbjct: 402 VTSDNPRTEDPMKIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKG 460 >gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] Length = 487 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 154/455 (33%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ + F A+ G +DG I A+Q+GA V + + + Sbjct: 15 DLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAVAYEVEGATVLPLTDV 74 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A + ++ +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L + + +S G + + +A Sbjct: 135 TLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHGLDQGRVAALAFDVA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E +AKA++ +N DD F L A H + T Sbjct: 195 VLTNLSRDHLDYHGTMEAYGAAKAKL-FAWNDLRCRVINLDDDFGRQLAADKHESRLITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + A R+ + + + + +G N+L +G + L Sbjct: 254 --SLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLSNVLAAVGALLGLE 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D + L GR R ++D ++ + VL + PH Sbjct: 312 YALDEILAVLPKLEGPAGR--MQRLGGGTQPLVVVDYAHTPDALE-----KVLLALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 +GR + + G G L + V ++ + ++ Sbjct: 365 KGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDDIRAGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + +S DVVV+ K Sbjct: 421 SAAEKVEFVAGRGLAIARLIASASADDVVVLAGKG 455 >gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 75/460 (16%), Positives = 143/460 (31%), Gaps = 39/460 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 I+ G ++G+S DSR +AP AF A+ G DG FI A +GA + + + Sbjct: 34 IEAQLEGPAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQA 93 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + SIPV V + L+ A R T++A+TG+ GKT+ + Sbjct: 94 V-----ETSIPVLAVKEPRRFLSIAASRFFGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179 A IG+ + + + + S G + Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAGEGVTHAAMEASSHGLDQSRL 208 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+ A T + H+ +E +AK +F+ L K + DD + + Sbjct: 209 DGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQLLPKGAPAVIFADDPWSAQAIKAA 268 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 G K + + + + + + + + +++ + Sbjct: 269 ADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEIFEVDIPL-----AGDFQVANA 323 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + A++ G R + L Y P ++ +V Sbjct: 324 LVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 380 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413 L + P GR + V G G + ++ V ++ + Sbjct: 381 LGSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 436 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 437 RAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKG 476 >gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] Length = 467 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 153/442 (34%), Gaps = 33/442 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGV 88 DSR + P F A+ G G +FI +A+++GAG ++ + A + + Sbjct: 2 DSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVVA 61 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------IGS 142 +D L A T+IA+TG+ GKT+ + G+ Sbjct: 62 EDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVEGA 121 Query: 143 YNNHIGV----PLTLARMPVDVDFGIF---ELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 Y+ +G P+TL RM + + S G + V A T Sbjct: 122 YSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFTQD 181 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL + +E +AKA +F + + + + A + + + G+ Sbjct: 182 HLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGREVG 241 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD +L+ + + + + + + ++ IG A+N+L+ G+ AD + + Sbjct: 242 ADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERVFE 301 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L GR + +D ++ + + + + PH GR IA++ Sbjct: 302 TLPGMKTVRGRMQLAATRDTGA-TVFVDYAHTPDAVAT-----AIKALRPHVMGRLIAIV 355 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV-HYSET 429 G G L + V ++ +++ A+ + Sbjct: 356 GA----GGDRDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGD 411 Query: 430 MDGLFLFIQSSLVDGDVVVVKS 451 L +L GD +++ Sbjct: 412 RAEAILRGVDALGPGDALLICG 433 >gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 503 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 152/493 (30%), Gaps = 51/493 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL +I+ ++ + GIS S + F ++G DGH ++ A Q Sbjct: 1 MMKLKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA +V + IP + V + AL KL K +I IT + GKTT Sbjct: 61 GAVAAIVE----ELQEDVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLIGITATNGKTT 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGIFELGM 169 T M+ L + IG+ I T + VD G+ + M Sbjct: 117 TSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHVTM 176 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S V I + I+ H+ + E+ AK+ + + LN Sbjct: 177 EVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNASENSIAVLNL 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGK 279 D + L ++ A I + + A + + Q + Sbjct: 237 DCPYSASLVDQTKAEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQQYEPS 296 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 EV G H N ++ + + + T + L F E R + + Sbjct: 297 EFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVERRFQFIFEEDIKIID 356 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSL 398 S N + L + + V E G + + +A Sbjct: 357 DHFANSGNIDV--------TLGTLKYMDYEKLHLVYAIRGERGPTVNRENAEAIARWAPK 408 Query: 399 YNISHVW-------------LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444 I+ + ++ + ++ + I V + + + +G Sbjct: 409 LGITEIIATKSVSHVTHKDRVTEAELTVFQEVMRDAGIKVDLFDELPDSICYAIGKANEG 468 Query: 445 DVVVVKSSNSCGF 457 D++++ F Sbjct: 469 DLILLGGCQGMDF 481 >gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC 27755] gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC 27755] Length = 488 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 76/481 (15%), Positives = 139/481 (28%), Gaps = 57/481 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + + + DSR + P F I G DGH ++ ++G Sbjct: 1 MKLTKLLERLDYKVVAGSDNIEITELVNDSRKVVPGSVFVCISGAVSDGHQYVKDVAERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--------------- 109 A V+V D+ + V V++ AL ++ A Sbjct: 61 AAAVIVEKDVEV---PEGLTVIKVENTRYALALMSAAYFGYPAEKLKTIGITGTKGKTTT 117 Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + AI VG A+ K + + ++ + D + E Sbjct: 118 TYMVKAILEEVGHKVGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQMVEAGCDCVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S G + T + I + T + H+ E+ K + Sbjct: 178 V--SSQGLMLHRTAGIMFDIGIFTNLGEDHIGPNEHKDFEDYKRCKGLL-------FKQC 228 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSM 281 + + I +FG + AD + K S + Sbjct: 229 KVGIGNVDDKWFEDVFKDATCEIETFGFGEKADLRAIDVKHISRPGYLGVWYHVTGLMDF 288 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V G N L + + V+ AL R FTL Sbjct: 289 DVEIDIPGEFSVYNSLTAIAVCRHFNVPVEKIKDALK----VAKVKGRIEMVKVSDDFTL 344 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + A S+L + + GR + V G G S++ ++ EV + Sbjct: 345 MIDYAHNA----MALESLLHTLRDYNPGRIVTVFG---CGGNRSKTRRYEMGEVSGKLSD 397 Query: 402 SHVWLSG----FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450 + S A+ D + + Y + + GDV+V+ K Sbjct: 398 FTIITSDNPRFEEPQAIIDDIIVGMKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGK 457 Query: 451 S 451 Sbjct: 458 G 458 >gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 505 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 143/458 (31%), Gaps = 46/458 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + ISIDSR + F ++G G +F A ++GA V+ + + L+I Sbjct: 30 ENEILEISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSERV----DDLAI 85 Query: 84 PVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 P V D A LA A SK +I +TG+ GK+TT ++ L + I Sbjct: 86 PQLIVKDAGEACG-LASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKCGLI 144 Query: 141 GSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 G+ + G A VD + S G + Sbjct: 145 GTIVYNDGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCLYDR 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAE-IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV T + P HL +E AK + + + +N DD + E + + + Sbjct: 205 AVFTNLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKIANEFAPHVLG 264 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 +R+ + V +G + N L + Sbjct: 265 FSLRQKADNAFYGSIRRSSIRGIIMDISFPDGSTLENVTLPLLGEYNVLNALAASSVAWS 324 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D + K L P GR +RY + +A VLS + P Sbjct: 325 LDFDAEVIRKGLENCPPVPGRLERYFVEDGPVCIIDYAHTPDA-------LEKVLSTVKP 377 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416 GR V G G + + ++ + ++ + + + D Sbjct: 378 LCSGRVWLVFGH----GGERFKENRPILGSIAARFADCIVVTMDNPRSEDPRDIALQIAD 433 Query: 417 AL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + P S F GDVV+V Sbjct: 434 GIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTG 471 >gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] Length = 496 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 81/469 (17%), Positives = 159/469 (33%), Gaps = 39/469 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + DL G + V +++DSR + F A+ G G +FI +A++ GA Sbjct: 10 SLRDL-----GLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGA 64 Query: 66 GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 G V+ + +G + +D AL + T++A+TG+ GKT+ Sbjct: 65 GAVLTDAAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTS 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLARMPVD-VDFGIFE--LG 168 + +G+ P+TL RM + G+ + Sbjct: 125 VATFTRQIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V+ A T HL + E+ +AKA +F + + + Sbjct: 185 ASSHGLSQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINI 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + G+ + AD L + + + + +G+ + I Sbjct: 245 DDPRGVDMVAIARARGQEVLTVGR-EAADICLEAQRFDATGQEIRLSFEGEVRQERLGLI 303 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A N+L+ G+V D D L + GR + N +D ++ Sbjct: 304 GGFQADNVLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGA-AVFVDYAHTP 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + + + PH GR +A++G G L + V ++ Sbjct: 363 DAVAT-----AIKALRPHVMGRLVAIVGA----GGDRDKGKRLLMGQAAAEFADSVIVTD 413 Query: 409 -----FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +++ + + L +L GD +++ Sbjct: 414 DNPRSEDPASIRAMVMEGAPEALEVGDRAEAILRGVDALGPGDALLICG 462 >gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae LPCoLN] Length = 483 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 154/473 (32%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL +Q G V V ++ DSR + + F A KG YDG+DF A+ G Sbjct: 1 MDLKELLHGVQAKIYGKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 A + + LS+ ++ +L+ SK I +TG+ GKTT Sbjct: 61 AIAIASS----LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167 ++ L S +K +G+ + +G + LA M + + Sbjct: 117 TCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVV-M 175 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S +G AV+T I HL E +AKA++F + +G + +N Sbjct: 176 EVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLVPPSGMVVINT 235 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + ++ + ++G AD++ + S + + + + Sbjct: 236 DSPY----ASQCIESAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSF 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG + N+L + V + + Y Sbjct: 292 IGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPCPVYID----YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ ++ L ++ P GR I V G G L + V S Sbjct: 348 HTPDALDNVLTGLHELLPE-GGRLIVVFG----CGGDRDRSKRKLMAQVVERYGFAVVTS 402 Query: 408 G----FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S D D+V++ K Sbjct: 403 DNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKG 455 >gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270] gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270] Length = 516 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 81/501 (16%), Positives = 162/501 (32%), Gaps = 44/501 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LL+ ++ I + I +S++++ + F AI+G DGH +I A Sbjct: 5 IMKLKTLLEDLEILEIKGNLDIEKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAK 64 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++G +V L + V + AL+K++ + II IT + GK Sbjct: 65 KQGCYACIVE-----DFVDLDVAQIKVKNSRAALSKVSHNYYGKPSEDLDIIGITATNGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163 TTT ML IG+ I + + + D Sbjct: 120 TTTSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSIFRERKADKV 179 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 I E+ S V +I + ++ H+ E K+++ ++ Sbjct: 180 IMEV--SSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITEAKEHQIA 237 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--------LRKWKQCSEQSWMEVQ 275 LN+D+ + L +K+ A + + + Sbjct: 238 VLNFDNPEIKELASKTKAKVFSFSLDDSLENFSMKNLDLSTGRGKFDFIINRDIETKSGI 297 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 L+ V + G+ N ++ + I + D+ T +AL +F E R + Sbjct: 298 LKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERRFEIIFEKDF 357 Query: 336 QGFFTLIDESYNANP--ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + N + ++ + G R L + + + + + L+ Sbjct: 358 KIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKIIEWNNKLKLS 417 Query: 394 EVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 E+ + + V +D +I VH +T+ + DVV+ Sbjct: 418 EIYATLSRDTVTWKDEVSDEERDIFLKIMKENNIKVHLFDTLKEAVETVIDIAQKDDVVM 477 Query: 449 VKSSNSC-GFYRL-INLLLEE 467 R+ +N +LE+ Sbjct: 478 FAGCQGMDKAGRIGLNYILEK 498 >gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 487 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 156/455 (34%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ + F A+ G +DG D I A+++GA V + + Sbjct: 15 DLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAVAYEVQGATVLPITDV 74 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A ++ +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + N L + + +S G + + +A Sbjct: 135 TLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL ++ AKA++ +N DD F L A+ + T Sbjct: 195 VLTNLSRDHLDYHGTMQAYGEAKAKL-FAWNDLKCRVINLDDEFGRQLAAEKRESRLITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + A +R+ + E + + +G N+L +G + L Sbjct: 254 --SLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGLD 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D +K L GR R ++D ++ + VL+ + PH Sbjct: 312 YALDEILKVLPKLEGPAGR--MQRLGGGTQPLVVVDYAHTPDALE-----KVLTALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 +G+ + + G G L + V ++ + ++ Sbjct: 365 KGKLLCLFG----CGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDDIRAGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +V + + +S DV+V+ K Sbjct: 421 MAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKG 455 >gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dyadobacter fermentans DSM 18053] gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans DSM 18053] Length = 491 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 145/474 (30%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL ++G I V I +DSR + P F A++G DGH FI A GA Sbjct: 7 LSSLLGEVKGAIIHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAADLGAV 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 ++ + I V+D A+ +A A + + +TG+ GKT+ Sbjct: 67 AILCEE--LPEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGTNGKTSVAT 124 Query: 125 MLTIAL-------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-ELGMS 170 L + + ++ V L + + +S Sbjct: 125 FLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEVS 184 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + T I HL + AK F+ L K+ +N DD Sbjct: 185 SHSVAQHRITGLHFAGGIFTNITHDHLDFHKTFDNYIKAKKGFFDALPKSAFALVNIDDR 244 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A ++ + + + + + S EV IG Sbjct: 245 RGTVMVQNTKARV--------ETYSLQTLATFKGKIISDTLAGMHMDINSQEVWFRVIGR 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + LS GR +++ A Y P Sbjct: 297 FNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSADLIVGIVD----YAHTP 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +++ + ++ + E V G + ++ + V L+ + Sbjct: 353 DALENVLETITHLRNGNEQVVTVV-----GCGGNRDAEKRPKMAEIACRYSNRVILTSDN 407 Query: 411 VL-----ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + + E L GD++++ K Sbjct: 408 PRFEDPMDILDQMRKGVPPLDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKG 461 >gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. m3-13] Length = 418 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 145/429 (33%), Gaps = 38/429 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L+Q + + + ++ I +DSR + FF IKG DGH F AV KG Sbjct: 1 MKLQQLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFAQEAVNKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ + +++PV V D + A+ LA + K +I +TG+ GKTTT Sbjct: 61 AVAIISEKPL-----DVAVPVIVVPDTMRAMAILADVFFQQPTHKLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFE 166 ++ ++ IG+ IG + VD + E Sbjct: 116 THIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQMVENKVDTVVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A + G Sbjct: 176 VSSHALHMGRVYGC--DFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSLGNSYNLAKP 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + ++G ++ +D + + K ++ + ++ K + + Sbjct: 234 KYAVLNADDPASDIYKRATAAQVITYGINETSDIRAKNVKTSAKGTTFDLVYDNKVVPIN 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L + + ++T I + GR + + Sbjct: 294 LKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFEAIEAGQDFTVIVD--- 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q+S + ++G G L +++ S Sbjct: 351 -YAHTPDSLENVLKTTKQLSQNN---IYCIVG----CGGDRDRSKRPLMAAVAVNYASKA 402 Query: 405 WLSGFHVLA 413 + + + Sbjct: 403 IFTSDNPRS 411 >gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] Length = 487 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 98/483 (20%), Positives = 163/483 (33%), Gaps = 54/483 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L D+L+ + V G++ DSR + P F A+ G DG +FI A Sbjct: 1 MSGL-RLSDILR------RDLDVDPVVTGVTADSRKVGPGTLFCALPGTARDGREFIPQA 53 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+ D +A+ + + DV A A A T +AITG+ GKT Sbjct: 54 LSQGAAAVLAPEDTLATASN----ILTTYDVRRAYALAAKAFYGAQPKTCVAITGTNGKT 109 Query: 121 TTKEMLTIALSSIKKTYACI------------GSYNNHIGVPLTLARMPVDV-----DFG 163 + + + A + G+ A + G Sbjct: 110 SVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHLASLARDG 169 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + L S G + V A T + HL + +E +AK +FE L G Sbjct: 170 VTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLFEQLLPRG 229 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + DS A S ++ S G+ L + + ++ QG+ Sbjct: 230 RVAVLNADSDAYNAFAASAITAGASLLSVGERGQH-LTLTHRDLTVDGQILYLEHQGRKF 288 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 EV G A N L+ G+ + ++AL+ GR +R N Sbjct: 289 EVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTGNGA-EIY 347 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + VL + PH +GR + V G G ++ Sbjct: 348 VDYAHTPDGLET-----VLKALRPHTQGRLVCVFG----CGGDRDRGKRPQMGAIAERLA 398 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV- 449 V ++ + + L + + E +SL GDV+VV Sbjct: 399 DRVIVTDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVA 458 Query: 450 -KS 451 K Sbjct: 459 GKG 461 >gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] Length = 493 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 46/460 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 V+ + +DSR + P F A+ G DG FI A++KGA V+ V + G++ Sbjct: 21 ASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTID 80 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 IPV +D + L+++A +I +TG+ GKTT +++ + + A Sbjct: 81 IIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAA 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182 +G+ N G L + L +S G I+ + Sbjct: 141 VMGTTGN--GFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 V T ++ HL +EE A+AK +F + I D+ K ++A+ Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQAIINVDDEVGAAWAKQLTNAI 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + + Q + IG A N+++ Sbjct: 259 AVSLAPT--TEFKHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFAT 316 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D + + P GR + ++ + +A L Sbjct: 317 LLSLGFDKSDLLATAAQLQPVLGRMELFQAENRAKVVVDYAHTPDA-------LEKALQA 369 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H +G+ A+ G G + + ++ V L+ + Sbjct: 370 LRVHCDGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVFIVKD 425 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + + D++++ K Sbjct: 426 MLAGLSKPAEAIVQHDRFKALSYALENAAPQDIILLAGKG 465 >gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Vollum] Length = 243 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 1 MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 58 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + + IP+ VDD L AL +LA R +I ITGS GKTT Sbjct: 59 NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTA 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ L S + + G++N+ IG+PLT+ M D + I E+GMS G Sbjct: 117 KDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 176 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222 >gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4] gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella loihica PV-4] Length = 488 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 70/454 (15%), Positives = 152/454 (33%), Gaps = 43/454 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SIP 84 + +++DSR I F A+ G DG D++ A+ +GA +++TD A G + + Sbjct: 20 SHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNGL 79 Query: 85 VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIAL------------ 130 + L+ LA R + +I +TG+ GKT+ +++ Sbjct: 80 RIYFFQLQRQLSALASQLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGLGKPAAVMGT 139 Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + G+ + + + +S G ++ V +AV Sbjct: 140 LGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFDVAV 199 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL ++ +AK +F + + D + ++ K + Sbjct: 200 FTNLSRDHLDYHGSMDAYGAAKQRLFRFSSLSHGLINLDDPVGRQWIQDKRC--KGLVGF 257 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S + A ++ KQ S+ + ++ +G N++ LG + + Sbjct: 258 SIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYLSGY 317 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + +S P GR +R+ + +A L + H Sbjct: 318 AMAQLLTQVSSLKPVAGRMERFTTQEGVTLVVDYAHTPDA-------IEQALRALRGHCR 370 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422 G+ V G G L + N V ++ + + ++D L Sbjct: 371 GKLWCVFG----CGGDRDKGKRPLMARAAEENADCVMVTSDNARSEDPMAIIQDVLAGLN 426 Query: 423 HVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +GD++++ K Sbjct: 427 KPQIALTQVDRQQAIREVVTLASNGDLILLAGKG 460 >gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis WUE 2594] Length = 492 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae Cit 7] Length = 487 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F AI G DG I A+++GA V + + Sbjct: 11 HTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD+F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDTFGRELTGIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + W++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + E + +S DVVV+ K Sbjct: 417 RPGFAAVDKVRFIEGRGQAIAELIASANADDVVVLAGKG 455 >gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6578] Length = 496 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 81/471 (17%), Positives = 142/471 (30%), Gaps = 47/471 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 +L AI+ + V ++ DSR + FFA+ G H DGH F+ A+++GA VV Sbjct: 1 MLDAIKPEEVRGEGDPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVV 60 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 ++ + + V + AL+ + +I +TG+ GK++T + Sbjct: 61 HERELPSYRE--GVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIY 118 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV------------------DVDFGIFELGM 169 L + CI + G + + E Sbjct: 119 QLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATS 178 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 L VR + V+T I H+ E+ K +F GL + G LN DD Sbjct: 179 HGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEEGKAVLNLDD 238 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L ++ A Y G + A ++ S V + V Sbjct: 239 PSSGFLAERTRAG--VWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWVPFPGR 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +++ + LG + + + + + GR +R + A Sbjct: 297 FNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERVEAGQPFLVLVDYAHTPGA- 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +L + EGR I V G E + ++ V L+ Sbjct: 356 ------FEKLLPFVRRFVEGRLIVVFGSAGE----RDRTKRPMQGRVASRWAEVVVLTDE 405 Query: 410 HVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 A + L + +GD V+ Sbjct: 406 DPRGEDRMAILREIAAGCEGLMEGESLFMVPDRREAIGLAVGMAREGDAVL 456 >gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus faecalis TX0470] gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus faecalis TX0470] Length = 306 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 16/317 (5%) Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 MP + + I E+GM H EI FL++L +P +A IT I AH+ N IA AK EI + Sbjct: 1 MPDETEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVD 60 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 GL K G++F+ D+ E L K + + +FG S+ + Q + EQ+ ++ Sbjct: 61 GLAKDGSLFVPSDEPLLEPLVEKV----TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS 116 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 M G + N L+ +GI K L+ + R + + A Sbjct: 117 D--TQMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANG 174 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ++ + YNANP +M + S++S G+RIAVLGDM E+G S + H +A+ Sbjct: 175 AE---ILSDVYNANPTAMGLVLDSFSKMSKV--GKRIAVLGDMLELGPDSAAMHQAMAQH 229 Query: 396 LSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 L+ I V+L G + L D L +IH E + L ++ L D+VV+K Sbjct: 230 LAPDAIEEVFLYGSEMAYLADKLQETYASANIHSFKKEEKNELIEAVKKVLQPEDMVVLK 289 Query: 451 SSNSCGFYRLINLLLEE 467 SN G +I+ LLE+ Sbjct: 290 GSNGMGLREVIDALLEK 306 >gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 487 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD+F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + E + +S DVVV+ K Sbjct: 417 RPGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKG 455 >gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] Length = 492 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 80/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] Length = 486 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 77/456 (16%), Positives = 151/456 (33%), Gaps = 40/456 (8%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P+ + G+ IDSR + +F ++G +DGH+FI ++KG +V + + Sbjct: 9 NAPEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVDDM--K 66 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + V++V LN++A K + +TG+ GK+T ++ S Sbjct: 67 KGVAYIQVENVNRTLNRVASMFYGHPSRKMKVFGVTGTNGKSTITSIIRDVYSHFAPCGY 126 Query: 139 -------------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + V+ L +S G V Sbjct: 127 IGTISISYGEVTLPPSLTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRVQSVDFD 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV + + HL IE AK ++F L+K G LN DD++ + L + A + Sbjct: 187 VAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKEGVAVLNADDAYVDQLADATEASVV- 245 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G +A +Q + S + + EV + + + N+L + ++ Sbjct: 246 ---TYGIDNHATYQAENIRIEKTGSRFTLVHGTERYEVSTNLVALYNIYNLLGAVAAMAE 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 ++ + L EGR +R + P M+ I+ Sbjct: 303 SGIPIEQQLPYLHDIRQIEGRMERIDEGQLFNVIVD----FAHTPDGMEKVFEYAKDIT- 357 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPR 420 IAV G + + ++ + L+ + + + Sbjct: 358 EDGHSIIAVFGSAG----KRDTKKRRVFGEIASRYCDSIILTEDDPRDEDPREIANEIKS 413 Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 I + + S D V++ K Sbjct: 414 GISDTNNIFIADRYAAIRQAIESANVKDTVLILGKG 449 >gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha710] gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis OX99.30304] Length = 492 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] Length = 499 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 83/458 (18%), Positives = 168/458 (36%), Gaps = 47/458 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 Q V I DSR ++ F A++G H DG D+I A+ G ++V S Sbjct: 30 AQCQVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCRIIVTELPRPESASDE- 88 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V D A+ LA R + TI+ +TG+ GKTTT + S + A Sbjct: 89 VVWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAALF 148 Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + IG + R VD + +S ++ + + + Sbjct: 149 STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFAL 208 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A+ T + HL ++ +AK +F+ L +N DD ++ A Sbjct: 209 ALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTPDAYALVNADDRNGSVMVQNCAA----H 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++++ +AD+ + Q + S + + + EV +G + A N+ G+ +L Sbjct: 265 LHTYAMRSHADYMAQLLGQYVDGSTLLLDNE----EVEIKLVGSYNAYNVTAVYGVARLL 320 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D+D ++ + + G+ A +G+ ++D ++ + ++L +S Sbjct: 321 LPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALE-----NLLKTVSEL 375 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417 + V+G G ++ H++L+ + + + + Sbjct: 376 NASQVYVVVGA----GGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLEG 431 Query: 418 LPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KS 451 +P++ ++ GD+VV+ K Sbjct: 432 IPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469 >gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] Length = 485 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 90/455 (19%), Positives = 161/455 (35%), Gaps = 42/455 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + V I DSR + FF + G DGH +I AV +GA +V + + Sbjct: 6 EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHR--G 63 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V++VL LN++A K T+I +TGS GKT M+ LS K Sbjct: 64 VLYIKVNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKMGYIG 123 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIA 187 + + GV + F L +S G V IA Sbjct: 124 TNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGVHFDIA 183 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E + ++KA++F +++ G LN D+ F L S + Sbjct: 184 IFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAILNTDEVRFYNLVKDSIR---CHL 240 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ++G A R + + S ++Q+ V +G N+L + + L Sbjct: 241 LTYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITSMLALE 300 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D ++++ +GR + + S + S Sbjct: 301 MPMDQVLESVGYIRGVDGRMELLEHPYPFTVIVDYC----QHAKSFEKVFQFAK--SVQT 354 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 GR IAV G G+ + + + ++ + Y + V L+ +++ L Sbjct: 355 NGRIIAVFGAP---GKKNYNKREKIGKLANQY-CNQVILTAEDNRDEDIHDICLDIQEYL 410 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V E GD++++ K Sbjct: 411 EKPVSVII-EDRRIAIEQAIEIANHGDIILILGKG 444 >gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] Length = 492 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 79/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D ++P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D+ EL+ +Y +G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD + + S+ Q + +G AQN+ + ++ ++ ++ Sbjct: 269 ADICITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLE 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQSAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP Y E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPEYVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAATNDIILIAGKG 464 >gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM 10507] gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM 10507] Length = 485 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 82/477 (17%), Positives = 144/477 (30%), Gaps = 49/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ V + DSR + F I+G DGH F+ V+KG Sbjct: 1 MKLTALLEDLEYTCCQGDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 AG++VV + A + V V D A+ ++ A + I +TG+ GKTTT Sbjct: 61 AGVLVVEEKVEAPEH---VTVILVKDTRYAMACISAAYFGHPARRLKTIGVTGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L + IG+ +G V + D + Sbjct: 118 TYMVKSILENAGYRVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEMADAGCDCVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + T + T I P H+ E Sbjct: 178 VSSQALMLHRTAGFEFDFGIFTNIEPDHIGP-----NEHRDFQHYLECKSMLLRQCKVGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVH 285 + + + + +FG S+ AD + K S + W + +V Sbjct: 233 VNRDDKHFEQIIKGHTCALETFGFSEKADLRAEDAKLVSGKGWLGIDYQVRGMMNFQVEI 292 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N L + I + AL R FTL+ + Sbjct: 293 DIPGKFSIYNSLTAIAICRHFKVSEKDIVNALR----VAKVKGRIEMIKVSDEFTLMID- 347 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y N ++++ ++ L + PH ++ G S+ ++ E + Sbjct: 348 YAHNAMALESLLTTLREYHPHR------LVCLFGCGGNRSKLRRYEMGETSGRLADLTII 401 Query: 406 LSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S A+ D + I + GD++++ K Sbjct: 402 TSDNPRYEKPQAIIDDIKVGISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKG 458 >gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] Length = 491 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 74/477 (15%), Positives = 147/477 (30%), Gaps = 47/477 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL + +++DSR+I + F A+ G DG FI A+ +GA Sbjct: 3 LRELL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGAT 58 Query: 67 LVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGK 119 V+V+TD G + + ++ ++ +A + I+ ITG+ GK Sbjct: 59 AVLVHTDNPQEQGKVIVAEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGK 118 Query: 120 TTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 T+T ++ + + + G+ + + Sbjct: 119 TSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTC 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ V +AV T + HL +E A+AK +F + Sbjct: 179 AMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDSLRHGLLN 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D L + +S K A F + + + + +++ Sbjct: 239 LDDPIGGAWLAELKNVPAKIWGFSIEAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDISS 298 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L L + + D+ + P GR +R+ A N + Sbjct: 299 PLLGAFNLSNLLAALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTADNITLVVDYAHT 358 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +A L+ + H G V G G L + + Sbjct: 359 PDA-------IEQALNALRRHCAGVLWCVFG----CGGDRDKGKRPLMGQAAEQFADRIM 407 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + + GDV+++ K Sbjct: 408 VTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKG 464 >gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] Length = 483 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 70/454 (15%), Positives = 152/454 (33%), Gaps = 46/454 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GI DSR I + F A++G DGH++I AV+ GA V+V+ + A+ + Sbjct: 19 EEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVEAAFP---V 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + D+ L LA + + I + T I A IG+ Sbjct: 76 KYIWIKDLRKKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSNKTARIGTV 135 Query: 144 NNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 IG V + + +++ + E+ SH ++ + ++ ++ Sbjct: 136 EYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEV-SSHALDLGRV-DMLEFDVS 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E+ AK ++F ++K + Sbjct: 194 MFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG----KRLSSEFGG 249 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S+G + R + + +E+ + S +G + N+L + I +L Sbjct: 250 ISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNVLGAISIALLLG 309 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + + ++ + GR + C N + +A ++L I+ Sbjct: 310 IEKEIVLERIKELKGAPGRYELVNCGQNFTVIVDYSHTSDA-------LENILKSINELK 362 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI 422 +G+ I V G G + + ++ ++ + + + + + Sbjct: 363 KGKVITVFG----CGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGM 418 Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451 E D + D++++ K Sbjct: 419 KGKNHIVEEDRDHAISKAVELAEEKDIILIAGKG 452 >gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC 29176] gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC 29176] Length = 496 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 149/481 (30%), Gaps = 57/481 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + + V + DSR + F I G DGH + +KG Sbjct: 1 MRLDTLLERLEYKVVQGSAETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEVAEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A VVV D+ + V V+D AL ++ A K I+ ITG+ GKTTT Sbjct: 61 AAAVVVEKDVEV---PADVTVIKVEDTRYALALMSAAYFGYPAEKLKIVGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L IG+ IG + D + E Sbjct: 118 TYMIKSILEETGHKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEMVKEGCDCVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S G + T + I + T + H+ E+ K + Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLL-------FKQC 228 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSM 281 + + + + +FG S+ AD + + S + Sbjct: 229 RLGIANVDDKYFEDVFSGATCKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVAGVMDF 288 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V G N L + + + AL R FTL Sbjct: 289 DVEIDIPGTFSVYNSLTAISVCRHFEVPAELIKDALKKAK----VKGRIEMVKVSDDFTL 344 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + Y N S+++ ++ L + P ++ G S+ ++ EV Sbjct: 345 MID-YAHNAMSLESLLTTLKEYHPKR------LVCLFGCGGNRSRDRRFEMGEVSGRLAD 397 Query: 402 SHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450 + S A+ D + I + Y E + S GDV+V+ K Sbjct: 398 LTIITSDNPRFEEPQAIIDDIKTGIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGK 457 Query: 451 S 451 Sbjct: 458 G 458 >gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M13399] Length = 492 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha275] Length = 492 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELVGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] Length = 485 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 75/460 (16%), Positives = 141/460 (30%), Gaps = 36/460 (7%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 + V G++ DSR++ P + FFA+ G DG FI A+ GA V Sbjct: 10 DATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFIDAAIASGAVAV----AG 65 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + +P + AL A R ATI A+TG+ GKT+ + Sbjct: 66 DHAPARGRVPFIATPNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLG 125 Query: 135 K--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTH 180 + ++D E L S G ++ Sbjct: 126 YLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRVD 185 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239 VR A T ++ H+ + K +F +E G + D + + + Sbjct: 186 GVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVESDGIAVICADHDCSDTVIEAA 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + + + A +R + + V L+ E V Q Sbjct: 246 GARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEHAGRERVIRLPLVGEFQIENAL 305 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + ++ D ++ H + RG+ R G +D ++ + + Sbjct: 306 VSAGLVIGTGGDVDQAFAALEHLEGARGRIERIGERNGAQVFVDYAHKPDALA-----KA 360 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413 L + P+ + + + V G G + L ++ N V ++ + + Sbjct: 361 LQALRPYAKRKLVVVFGA----GGDRDAGKRPLMGAIAADNADVVIVTDDNPRSEDPAAI 416 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + L GD +++ K Sbjct: 417 RAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKG 456 >gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 476 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 75/468 (16%), Positives = 149/468 (31%), Gaps = 51/468 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ I S I + GIS DSR I F A KG +DGH +I A++ G Sbjct: 1 MKIEKILKEISYISKNIQNDKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A ++ D + I V D AL K++ +I +TG+ GKTTT Sbjct: 61 ANTIIYTNDDINF--ESGINYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGIFE---------LG 168 ++ L+ + A IG+ + T + + I + Sbjct: 119 ANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILIKAKKENIKNAVME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + + V T ++ H+ ++ AK + +K + Sbjct: 179 TSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMILLNNSKKQVVNLDDDY 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + I + + ++ + ++ ++ + Sbjct: 239 GKRAKEIFKDALTISINEDSKY------------RAKNIKRVDLGLEFTVNGVKFHLNRF 286 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G + N L + I + L ++ KAL F + R + L + A Sbjct: 287 GQYDIYNSLCAIAIANDLGYKLEEISKALEDFTGVKSRFEFIENKLGINIVVDFAHTPEA 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ + + AV G G+ + + ++ + Y + V + Sbjct: 347 -------FENLFKDLPKDKK--IYAVYGI---NGDRTYDIRKAVGKISAKYGVFSVITTD 394 Query: 409 F--------HVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVV 447 +K+ + + + + S GD V Sbjct: 395 DPKFDTFENISQQIKEGVDENKGECIIIKDRKEAIKYGISHAKKGDFV 442 >gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] Length = 485 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 155/474 (32%), Gaps = 44/474 (9%) Query: 5 WTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +LL I G + V ++ DSR+I + F A KG DG+DF AV+ Sbjct: 1 MNLKELLHNIDIDAKVYGKISPIEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKT 120 GA VV + LS+ ++ +LA ++ ITG+ GKT Sbjct: 61 NGAIAVVSS----IYNPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKT 116 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM----------- 169 T ++ + K IG+ + +G + + Sbjct: 117 TVSHLIKFLFDACDKPSGLIGTIEHILGNNRIQDGFTTPESCLLQKYLAEMVKSNLTAAV 176 Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 S +G + V + V+T + HL EE AK ++F L +G +N Sbjct: 177 IETSSIGLVLDRLANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQLSDSGLAVVN 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + + A+ + ++G + AD++ + + ++ +G+ Sbjct: 237 NDLPQAKQFLEATRAVPV----TYGIEQLADYRASNLRFSPFGADFDLIHKGEIFPCHSP 292 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG + N+L + + + +S+ + R + ID ++ Sbjct: 293 LIGQYNVYNVLAAIAVTHQRLNCDLQQL--VSLVASVKSPRGRLEPIQSGPCPIYIDYAH 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++ L + P G+ I V G G + + V Sbjct: 351 TPD--ALDNVCQTLRTLLP-SGGKLIVVFG----CGGDRDRSKRKIMAQVVEKYGFAVVT 403 Query: 407 S----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 S G + + + + S D D+V+V K Sbjct: 404 SDNPRGEDPETIVNEICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 457 >gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CFN 42] gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CFN 42] Length = 506 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 74/460 (16%), Positives = 144/460 (31%), Gaps = 38/460 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ G ++G+S DSR++ P AF A+ G DG FI A +GA + + + Sbjct: 34 LEAQLEGPAGLLDISGLSSDSRNVEPGNAFVAVTGTKADGAGFIADAAGRGAAVAIASQP 93 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + A+ IPV V + L+ A R T++A+TG+ GKT+ + Sbjct: 94 VDAA-----IPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179 A IG+ + + + + S G + Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+ A T + H+ +E +AK +F+ L G + + D + ++ Sbjct: 209 DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSPQAVQA 268 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + + G+ + R +Q+ + + Sbjct: 269 AADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDI----PLAGDFQVANA 324 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + A++ G R + L Y P ++ +V Sbjct: 325 LVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 381 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413 L+ + P GR + V G G + ++ V ++ + Sbjct: 382 LNSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 437 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 438 RAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 477 >gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 487 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 153/475 (32%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ IQ I + I DSR + + F I+G G +I A+Q+GA Sbjct: 3 LQELLKGIQVEKIIGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ ++ V++ AL +A ++ +TG+ GKT+ Sbjct: 63 AILSEKEIAIE----GTTTIKVENSRKALAAVASRFYKFPTNTLKLVGVTGTNGKTSITY 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168 M+ L IG+ +N IG + VD + E+ Sbjct: 119 MVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEV- 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH E+ + + + + T + P HL ++ +AK ++F I ++ Sbjct: 178 SSHALELGRV-DHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKTTLCNIINVDDI 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + A+ + +FG ++ AD K + ++ + S E Sbjct: 237 H---GKMIAEELKEEQIPLITFGMNQQADVYATDLKINLKGVSFQLHMGQDSKEFHVKIP 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N + ++ I IL ++ AL GR + Y Sbjct: 294 GLFTVYNAMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNSVIID----YAH 349 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P +++ + + +P I V G G + +S + ++ Sbjct: 350 TPDALENILISTRKFAPKR---IITVFG----CGGDRDKTKRRIMGEISGKYSDYSIITS 402 Query: 409 FHVL-----ALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + I + + D++++ K Sbjct: 403 DNPRTEEPLKIIEMIEDGIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKG 457 >gi|126650748|ref|ZP_01722964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] gi|126592413|gb|EAZ86431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] Length = 744 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 15/365 (4%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + IIAITGS GKTTTK + LS + +N + + Sbjct: 383 KKNLPIIAITGSAGKTTTKAFVGSILSKQWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 442 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223 E GM++ G I +++P+I+++T I AH+ NF + +A AK+E+ G+++ G + Sbjct: 443 LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 502 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LN DD L+ + + + G +AD++ + +++L G+ +E+ Sbjct: 503 ILNKDDDNSRFLETQQFKGK---MLTVGIKSDADYRAYDLQYKDIGMSFKMKLHGQEIEL 559 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G H N L + + L L+ P + T+ID Sbjct: 560 YIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPPRRLTIYN----LRDDITVID 615 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ +++P ++AAI VL+ I+ + +A++G M E+G L + + + E + I Sbjct: 616 DTVHSHPQGVRAAIDVLTNIAKKRK---VAIIGQMRELGVLREEEYRKVGEYIYEEGIDE 672 Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 GF + +A VH+ D L + + D ++VK ++ + Sbjct: 673 FITYGFRTDEMSNAAIEMGMDPSRVHHFINKDALHALLDKLIKPHDTILVKGASKTNMFE 732 Query: 460 LINLL 464 + L Sbjct: 733 TVKYL 737 >gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae B728a] gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv. syringae B728a] Length = 487 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 84/459 (18%), Positives = 156/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + Sbjct: 11 HTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVAGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + G L+ +A ++ +TG+ GKT+ +++ AL + + Sbjct: 71 ITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD F L A Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSDLKCRVINLDDDFGRELAAVKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +KAL GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455 >gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] Length = 507 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 157/477 (32%), Gaps = 43/477 (9%) Query: 5 WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T +LL + + ++GI DSR + + F G DGH F+ A + Sbjct: 1 MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 +GA ++V ++ IG V V D L+ LA A R ++ ITG+ GKT Sbjct: 61 QGAVVIVATKEV--EIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118 Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165 TT +L S+ + + P L V + Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + + +AV T + H+ + AK ++F + Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + S + +FG K+AD + ++ + V+ ++E+ Sbjct: 239 VVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISS 298 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N+L + + + A ++ ++ + GR + Q F ++D + Sbjct: 299 GLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVD--EEQPFAVIVDYA 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + S +L + G R I V+G G + ++ Sbjct: 357 HTPDALS-----RLLDTVRECGPRRIITVVG----CGGDRDRGKRPVMAKIAAAKSEVCI 407 Query: 406 LSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + V + + +GD VV+ K Sbjct: 408 FTSDNPRSEDPRKFERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKG 464 >gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya zeae Ech1591] gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591] Length = 494 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 148/472 (31%), Gaps = 42/472 (8%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+ + + P+ + +++DSR A + F AI G DG +I A+ +G VV Sbjct: 6 LRDVLAPWVKDAPERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVA 65 Query: 71 NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 D G+L +PV +DD+ L+ LA + ++ +TG+ GKTTT + Sbjct: 66 QADEATPDGTLTEMHGVPVIYLDDLNLRLSALAGRFYRQPSSSLQLVGVTGTNGKTTTTQ 125 Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170 +L ++ K + N +G + + +S Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAMEVS 185 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ + AV T ++ HL + +AK +F + I D+ Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKIINADDEV 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L A+ + ++ + + + + +G Sbjct: 246 GRRWLSRLPDAVAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAINSRLMGE 305 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L+ L + L ++ ++A S P GR + + + +A Sbjct: 306 FNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGRPTVVVDYAHTPDA-- 363 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L+ H G V G G L ++ V ++ + Sbjct: 364 -----LEKALAAARLHCRGTLWCVFG----CGGDRDRGKRPLMGAIAEQLADRVIVTDDN 414 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V DVV+V K Sbjct: 415 PRSEDPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKG 466 >gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis VCU121] Length = 686 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 102/480 (21%), Positives = 192/480 (40%), Gaps = 29/480 (6%) Query: 4 LWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSI-----APQEAFFAIK--------G 48 + T D+ I G I +N I + A+F+ K G Sbjct: 1 MLTIKDISNIIGGTLYDIENNIDREINDFET----IYGFVKSKHTAYFSPKKDTWWRELG 56 Query: 49 PHYD---GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 + G+D I + GL++ T IP V D + A LA+ R + Sbjct: 57 RSKNAPEGNDLIDKSNPN-VGLIITET--YVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQ 113 Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 K +IAITGS+GK++T+ + L + L ++ + F + Sbjct: 114 YKNPVIAITGSMGKSSTRMLTASLLKDYPIQENRGNNNIRAAIYANML-KLIKNPYFAVI 172 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E ++ + + ++P IAVIT I AH S F+ I+EIA KA IF GL + G + Sbjct: 173 ETSLNAINHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAII 232 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N D F + L ++H + + ++ + D L+ + + ++++++ + Sbjct: 233 NGDTMFADYLIDQAHQY-TQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNY 291 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + I+ + ++ + L F P K TLID++ Sbjct: 292 QINTFSDGMISNTLAAILILKNLNIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDT 351 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +NA+ +M AI + +G +I LG + ++G S+ H +L LS N ++ Sbjct: 352 HNASLPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYIL 411 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLL 464 + + + + ++ H+ Y + + ++ + VV++KSS+ F + L Sbjct: 412 CLDDDLRPVVNKI-KNKHITYYPNKELMINDLKYLCNEDSVVLLKSSSGGTQFPEVAKTL 470 >gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] Length = 490 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 165/476 (34%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ ++ + + V ++ DSR + P AF I G DGH ++ +KG Sbjct: 1 MRLTDLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A V+V + A + V VDD AL ++ A + +I ITG+ GKTTT Sbjct: 61 AKAVIVEKQVEA---PDGVTVIHVDDTRYALALMSAAYFGYPAEQLKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L + IG+ IG + VD + Sbjct: 118 TYMVKSILEGVGHKVGLIGTIETLIGGKAIPASNTTPESFTIHKYFKEMVDAGCDCVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226 +S G + T + I + T + H+ E+ K + T Sbjct: 178 VSSQGLMLHRTAGIEFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGIL-------FTQCRL 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + +FG S+ AD + + S ++ V+ + Sbjct: 231 GIANVDDRWFEDVFRNATCRTETFGFSEKADLRATDVEHISRPGYLGVKYHVSGLMDFDV 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 I ++ +L +++ A + + +G+ ++ F +ID ++ Sbjct: 291 EIDIPGEFSVYNSLTAIAVCRHFDVPAEEIKKALKVAKVKGRIEMVKVSDDFTLMIDYAH 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA + S+L+ + + GR + V G G S++ ++ EV V Sbjct: 351 NA-----MSLESLLATLRDYDPGRLVTVFG---CGGNRSRTRRFEMGEVSGKLADFTVIT 402 Query: 407 SG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 S A+ D + I Y+ + + GDV+++ K Sbjct: 403 SDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKG 458 >gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M04-240196] Length = 492 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] Length = 492 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/447 (18%), Positives = 144/447 (32%), Gaps = 39/447 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDGYGAELAGRLKKDCLDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITNFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLA 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHY 426 G G L ++ V ++ + + A+P V Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEV 439 Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 --DRAVAIRYAVEQAAANDIILIAGKG 464 >gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 237 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 99/208 (47%), Gaps = 8/208 (3%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H + + VN IDSR + F +KG + DGH FI +KG Sbjct: 1 MNLHQIANITGAK-FKNLSNKKVNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + ++ S V VDD L AL +A + I ITG+ GKTTTKE Sbjct: 60 AFGSFSSKNIEKSN------VLVVDDTLKALTDIAKYKKDFIDIK-IGITGTAGKTTTKE 112 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 +L+ LS Y G+YNN IG+P+TLA + + +G+FELG S G+I +LT ++ Sbjct: 113 ILSYLLSYFYPVYYTKGNYNNQIGLPITLANIDKNYRYGVFELGASKKGDISYLTDILNQ 172 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAE 212 +IAVIT + H G E + K Sbjct: 173 NIAVITNVGYGHTEGLGGFEGVLQEKKN 200 >gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechocystis sp. PCC 6803] gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803] Length = 505 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 77/455 (16%), Positives = 136/455 (29%), Gaps = 43/455 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPV 85 V G+S +S + P F + G DG +F A++ GA VV + V Sbjct: 35 VTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGECV 94 Query: 86 FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK--------- 134 V D++ LA A ++ +TG+ GKTTT ++ L+ + Sbjct: 95 IAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTL 154 Query: 135 KTYACIGSYNNHIGVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 T P + + + E+ SH + A Sbjct: 155 YTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEV-SSHALAQGRVLQCG-FACA 212 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL +E +AKA +F+ G +N DD + + L + + Sbjct: 213 VFTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDRL--PLDQVY 270 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 ADF + + +G N+L + L Sbjct: 271 TYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHLG 330 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D +K L F GR ++ + +Q ++D ++ + + L P Sbjct: 331 LDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVDYAHTPDSLE-----NALKAARPFI 385 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 GR I + G G L ++ ++ + + + Sbjct: 386 PGRLICIFG----CGGDRDRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGI 441 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 I GD V++ K Sbjct: 442 SLDIEPWIIGDRATAIHKAIREAKPGDGVLIAGKG 476 >gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 512 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/490 (16%), Positives = 142/490 (28%), Gaps = 58/490 (11%) Query: 5 WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 ++LL +QG + G VN + DSRS++P + F + G DGH F Sbjct: 1 MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 AV +GA + V + + +P D + +LA +I ITG Sbjct: 61 RDAVDRGAVALCVARPLAE----VQVPQLVSRDPRAFMGRLAATLYGWPARDLKMIGITG 116 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDV 160 + GKTT+ M+ L + +G+ G V L RM + Sbjct: 117 TNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADRTTPEGADVQWFLKRMRDNS 176 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEK 219 + S G + + T + P HL + AK +++ Sbjct: 177 CQACV-MEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNRYMKE 235 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 N D L + + + + M +++ Sbjct: 236 GWVGASNASDPRGAALLMEHPDRMHGYRVIGSNESPVEGCWCGRIRSYDLEGMTLEVYDP 295 Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 EV IG + +N + + + + D ++ L+ GR + YR Sbjct: 296 RGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLETYRFPN 355 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + + VL + G+ V G GE + S L Sbjct: 356 RVVGVIDYAHTPDG-------LEKVLGALRGVTVGKLWVVFGH---GGERTGSHRPKLGA 405 Query: 395 VLSLYNISHVWLSG----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSL 441 V + V ++ + + + Sbjct: 406 VAASLADRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRGEAIRYALDNA 465 Query: 442 VDGDVVVVKS 451 GDVV + Sbjct: 466 EIGDVVAITG 475 >gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 488 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 77/455 (16%), Positives = 151/455 (33%), Gaps = 38/455 (8%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + ++G+ +DSR + + F A+ G +DG FI AV GA +V + + +L Sbjct: 17 SAETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVAGFVEAL 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +P+ + ++ +A +I +TG+ GKTTT ++ + K+ Sbjct: 77 QVPLVEMPELQQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKSCGV 136 Query: 140 I------------GSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPH 185 I N ++ D G++ M S ++ + V Sbjct: 137 IGTLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNGVGFE 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV T ++ HL +E AK +F + D+ + G++ Sbjct: 197 TAVFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKHALVNLDDEFGARVC--DVVEPGVQ 254 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I + AD + + + + ++ + E V G N+ + V++ Sbjct: 255 LITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSPLPGDFNLANLAAAVSAVTL 314 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + +K +S P GR + L + +A VL+ + Sbjct: 315 AGEPLAEVLKNVSRLRPVPGRMQSLSNTLGLQVIIDYAHTPDA-------LEQVLTALRL 367 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPR 420 H +G+ + V G G + ++ V ++ G A+ + Sbjct: 368 HVDGQLVVVFG----CGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDPAAILADIEV 423 Query: 421 SIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451 Y + GD VV+ K Sbjct: 424 GCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKG 458 >gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis Z2491] gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis Z2491] gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240013] Length = 492 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] Length = 499 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/486 (16%), Positives = 150/486 (30%), Gaps = 53/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + N +++DSR+I + F A+ G DG FI A+ Sbjct: 1 MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56 Query: 64 GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110 GA V+V+TD G + + ++ +A + + Sbjct: 57 GAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGV 116 Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163 I ITG+ GKT+T +++ ++S+ +K N G + D Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176 Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D L +S + A F + K + + Sbjct: 237 NTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 E+ +G N+L L + + D+ + + P GR +R+ A N Sbjct: 297 PEDETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +A L+ + H G V G G L Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCAGDLWCVFG----CGGDRDKGKRPLMGKA 405 Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + ++ + + L + + GDV+ Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465 Query: 448 VV--KS 451 ++ K Sbjct: 466 LLAGKG 471 >gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis FAM18] gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis FAM18] Length = 492 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANDYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] Length = 490 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 152/461 (32%), Gaps = 35/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + V+ ++ DSR + F A+ G G DFI +A++ GAG ++ + Sbjct: 9 GLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTDRAGA 68 Query: 76 A----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + + + V+D AL A T++A+TG+ GKT+ Sbjct: 69 EIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTRQIWE 128 Query: 132 SIKKT------------YACIGSYNNHIGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFL 178 ++ + G + V L + D + S G + Sbjct: 129 ALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGLDQKR 188 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 VR A T + HL +E AK +F GL G + + D L A+ Sbjct: 189 MDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGLRVAE 248 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + + + A ++ + + + QG + +V + IG A N+L Sbjct: 249 ACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAMNVLT 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D + L GR + + G +D S+ + + Sbjct: 309 AAGLVIAGGEDPEDVFAVLHKMEGVRGR-MQLAARRSHGAPIYVDYSHTPDSLEV----- 362 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413 L + PH GR + V G G + L + +++ A Sbjct: 363 ALKALRPHVLGRLVVVFGA----GGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAA 418 Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A L L L GD +++ K Sbjct: 419 IRAAVLAGCPEATVVADRAEAILRAVDMLEPGDALLIAGKG 459 >gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 494 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 75/484 (15%), Positives = 145/484 (29%), Gaps = 55/484 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I + GI DSR + P + F + G DGH F A KG Sbjct: 1 MNLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAGKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +VV + + +P V D A+ LA A + +I +TG+ GKTTT Sbjct: 61 AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ ++ IG+ G + + E Sbjct: 116 TYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGT 222 + SH E + A+ T + HL +EE + + K + Sbjct: 176 V-SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDES 233 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + A + ++G ++AD + ++ + V S + Sbjct: 234 ARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADVRASNISITAQGTSFHVDTFRGSAD 293 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + + ++ +L +GR + Sbjct: 294 ISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVDEGQPYAVIVDY 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + +VL ++ EGR + V G G + ++ Sbjct: 354 AHTPDG-------LENVLRTVNEFAEGRVLTVFG----CGGDRDRTKRPIMGKIAAKYSD 402 Query: 403 HVWLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449 V+++ + ++ L + + GDVV++ Sbjct: 403 VVFVTSDNPRTEDPELILKDIEAGLVEDGVATESYKLIVDRRKAIEKAIEMASPGDVVLI 462 Query: 450 --KS 451 K Sbjct: 463 AGKG 466 >gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] Length = 509 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 72/481 (14%), Positives = 145/481 (30%), Gaps = 45/481 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + + ++ ++ + GI DSR I F A+ G DGHDFI A+ GA +++ Sbjct: 4 IFEDVEYKTLKEGKSFVIKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMII 63 Query: 70 VNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125 D + + V+ + L +A + K II ITG+ GKTT+ Sbjct: 64 SEKNIDTGQYQSASDVTFIQVEGIRKKLGIIASNYYGYPQDKIKIIGITGTNGKTTSSFF 123 Query: 126 LTIALSSIKKTYACIGSYNNH-----IGVPLT-------LARMPVDVDFGIFELGMSHLG 173 L L + + P + + D+ I E+ SH Sbjct: 124 LENILEKTARIGTTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEV-SSHAL 182 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI + +++ A+ T + HL +E +AK +IF L + + + Sbjct: 183 EIGRV-DMLKFDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDD 241 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 AK + + KN D + + M+V++ K+ + + Sbjct: 242 EYGAKIYLENNAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTE 301 Query: 294 QNMLMTLGIVSILTADVDTAIKALS------VFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + +V A + + + + Sbjct: 302 NVYRFEIDLVGEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETIKNDLDVRI 361 Query: 348 ANPASMKAAI--SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + +V + + R I + G G ++ + Sbjct: 362 VVDFAHTDDGLLNVGKTLKQITDNRVITIFGA----GGDRDHEKRPKMAQAAIKFSDFII 417 Query: 406 LSGFHVL-----ALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--K 450 L+ + + + + + + + L GD +++ K Sbjct: 418 LTSDNPRTENPTKILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGK 477 Query: 451 S 451 Sbjct: 478 G 478 >gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 492 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 487 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKG 455 >gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu003] gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu003] Length = 435 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 53 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 112 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 113 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 172 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 173 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 229 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 230 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 287 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 288 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 347 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 348 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 406 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 407 VLVKASNAAGLGAVADALVAD 427 >gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis H37Ra] Length = 445 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 63 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 122 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 123 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 182 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 183 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 239 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 240 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 297 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 298 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 357 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 358 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 416 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 417 VLVKASNAAGLGAVADALVAD 437 >gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] Length = 503 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 155/474 (32%), Gaps = 40/474 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L + G + V+GI+IDSR + P F A+ G G F+ A++ GA Sbjct: 9 SLAEL--GLHGATGARGSARRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGA 66 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + A IG + + + DV A+ A A + A+TG+ GKT+ Sbjct: 67 TAIVTDPAGAAIIGDTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTS 126 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LG 168 L IG+ L D + G+ + Sbjct: 127 VTSFLRQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAME 186 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V +A T + HL + +AKA +F L I + Sbjct: 187 ASSHGIEQRRLEGVMLSVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVINI 246 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D A+ + I GK+ A +L + + + + +G++ + I Sbjct: 247 DDPKGADIARVAEDRGQEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLDLI 306 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G A+N+L+ G+ D A GR + N +D ++ Sbjct: 307 GGFQAENVLLAAGLAIASGDDPAHVFAAFPHLTTVRGRMQLAARRGNGA-SVFVDFAHTP 365 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + VL I PH GR +A++G G L + V ++ Sbjct: 366 DAIET-----VLQAIRPHVMGRVVAIVGA----GGDRDRTKRPLMGAAAARFADMVIVTD 416 Query: 409 -----FHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++DA V L L GD +++ Sbjct: 417 DNPRTEDAATIRDAVMAGAVAEGGCDVREVGDRAEAILRGVDMLEAGDALIICG 470 >gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM 273] gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium luteolum DSM 273] Length = 523 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 95/482 (19%), Positives = 162/482 (33%), Gaps = 38/482 (7%) Query: 1 MNPLWTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P+ ++L+ + + + G V ++ DSR + P F A++G DG FI Sbjct: 10 MQPVA-LREILRGMGAYEVAAGQTDGVMVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIK 68 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 A+ +GA VV D + P V D AL+ A A + I+ +TG+ Sbjct: 69 DAIARGASAVVSE-DFPMELALNGPPCIRVPDARRALSLAAAAYYGHPADRLRIVGVTGT 127 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDF 162 GKTTT +++ LS + IG+ IG L RM VD Sbjct: 128 NGKTTTARLISSILSMNGISCGYIGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGC 187 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S H + AV T + P HL +E A AK ++F+ L G Sbjct: 188 RAVSMEVSSHALELGRVHGIAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPGGI 247 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIY----SFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 N +D + A+ FG + ++ S + Sbjct: 248 GIFNTEDPMATFMAARVAEEQRACCSLDAAGFGGMRCGLNYGAMVRREGVGSSVVALSFP 307 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + ++ M M + V A S+ + G+ + Sbjct: 308 EGVQPEEEFRLLGRFNVMNMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEGPGFE 367 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T I + Y P ++ ++ L ++ P +GR + V G G + ++ + Sbjct: 368 GTAIVD-YAHTPDALHQSLGTLRELLP-PDGRLLVVFG---CGGNRDRQKRPEMGRIAIE 422 Query: 399 YNISHVWLS----GFHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV-- 449 V S A+ D + + L GD+++V Sbjct: 423 MADFSVITSDNPRDEDPEAILDEIEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAG 482 Query: 450 KS 451 K Sbjct: 483 KG 484 >gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] Length = 486 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 92/461 (19%), Positives = 156/461 (33%), Gaps = 48/461 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + G++ DSR + F A+ G DG DF AV KGA ++ + L Sbjct: 14 ANDSVIAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILA---PEGGLEGL 70 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YA 138 +PV +D A + A + A +A+TG+ GKT+ + + Sbjct: 71 GVPVVRSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMG 130 Query: 139 CIGSYNNHIGVPLTL---ARMPVDVDFGIFEL--------------GMSHLGEIRFLTHL 181 +G + G P + + E+ S G + Sbjct: 131 TLGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDG 190 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+ A T HL +E +AK +F+ L G + DS A + Sbjct: 191 VKLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAV 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++++S G+ +L + V+ QG++ ++ G A N+L+ G Sbjct: 251 TSGQSVFSVGE-DGQGLRLISRTPTPAGQDLVVEAQGRTYDIRLPLAGAFQASNVLVAAG 309 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + DV +KAL GR +R + G E+Y + +VL Sbjct: 310 LCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGG------EAYVDYAHTPDGLQTVLE 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + PH G+ IAV G G L + ++ + Sbjct: 364 ALRPHTRGKLIAVFGA----GGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRA 419 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ +A P + + L +GDV+VV K Sbjct: 420 AILEAAPGAREI---GDRRAAIRAAVDLLAEGDVLVVAGKG 457 >gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] Length = 493 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 80/461 (17%), Positives = 148/461 (32%), Gaps = 36/461 (7%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74 G + + GIS+DSR + P F A+ G G +FI +A+ GA V+ + + Sbjct: 12 GLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTDAEGA 71 Query: 75 --VASIGSLSIPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 A + + V D AL++ A T+IA+TG+ GKT+ + Sbjct: 72 KLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWI 131 Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178 + + + + GI + S G + Sbjct: 132 EMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGLDQRR 191 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V A T HL + AKA +F + + D + Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVA 251 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + + G+ D L + + + +GK+ + + IG A N+L+ Sbjct: 252 IARARGCEVITVGR-DGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLL 310 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V AD L GR + N G +D ++ + + Sbjct: 311 AAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDN-GGAVFVDYAHTPDAIAT----- 364 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 L + PH GR +A++G G L + + V+++ + + Sbjct: 365 ALQAMRPHVMGRLVAIVGA----GGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPAT 420 Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L ++ GD +++ K Sbjct: 421 IRAAVMEGAPEATEVGDRAEAILRGIDAIGTGDALLIAGKG 461 >gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 505 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 83/483 (17%), Positives = 159/483 (32%), Gaps = 48/483 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN L L Q + + P + GI S S+ P + F + G DGHD++ A Sbjct: 1 MNVLK-LSQLTQDLLVKRMIGNPDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 +Q+G ++ + GS IP V D A+ LA A +I +TG+ G Sbjct: 60 IQRGCAALMAEKKVERLEGS--IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIGVTGTNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDF 162 KTTT M+ IG+ + +G + + + Sbjct: 118 KTTTTHMIEHIFHHTGHKTGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKY 177 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+ L R + AV T ++ HL S +++ K+ +F L + Sbjct: 178 AVLEVSSHALRMGRVRGCNFK--TAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYG 235 Query: 223 IFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + K A + +G + +D + + + E + + S Sbjct: 236 SLPKVAILNADDPFSKKLAAKTSAQVIHYGIDQPSDVRASEIRMNQESTSFWLDTYLGST 295 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + +G N L + + + ++ + L F +GR + Q F + Sbjct: 296 WIHLNVVGIFNVYNALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIE--TGQDFQVI 353 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++N + V+S +G+ IA++G + + Sbjct: 354 VDYAHNPDGLE-----KVISTARAITKGKIIALIG----CEGDRDKAKRPIMAAKAAILA 404 Query: 402 SHVWLSGFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV- 449 L+ + + L + + GD V++ Sbjct: 405 DKAILTSDNPRSERSESILEDMVRGLDNAGLSRCETITSRKDAIHRALELAKTGDCVLIL 464 Query: 450 -KS 451 K Sbjct: 465 GKG 467 >gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 487 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKG 455 >gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] Length = 503 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 141/474 (29%), Gaps = 47/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL AI+ + V ++ DSR + FFA+ G H DGH F+ A+ +GA Sbjct: 5 LSSLLDAIKPEEVRGGGDPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAV 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 VV ++ + + V + AL+ + + +TG+ GK++T Sbjct: 65 AVVHERELPSYRE--GVVYLRVKNARRALSAASAVFYGHPSQDLEVTGVTGTDGKSSTTY 122 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------------------DVDFGIFE 166 + L + CI + G + + E Sbjct: 123 FIYQLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVE 182 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L VR + V+T I H+ E+ K +F GL + G LN Sbjct: 183 ATSHGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEGGKAVLN 242 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD L ++ A Y G + A ++ S V + V Sbjct: 243 LDDPSSGFLAERTRAG--VWGYGLGTREGARLWAEVREESLAGSRCLVHGRETLEVWVPF 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +++ + LG + + + + + GR +R + Sbjct: 301 PGRFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERVEAGQPFLVLVDYAHTP 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 A +L + EGR I V G E + ++ V L Sbjct: 361 GA-------FEKLLPFVRRFVEGRLIVVFGSAGE----RDRTKRPMQGRVASRWAEVVVL 409 Query: 407 S-----GFHVLALKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVV 448 + G +A+ + +GD V+ Sbjct: 410 TDEDPRGEDRMAILREIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVL 463 >gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus 03BB102] gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus 03BB102] Length = 255 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 9/229 (3%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGH+++ A+ Sbjct: 10 MNLKKLEEVINGGGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VDD L AL +LA R +I ITGS GKTT Sbjct: 68 NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125 Query: 123 ---KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 K+++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 126 KDIKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIER 185 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 186 FTWNSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 234 >gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] Length = 492 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA + + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + +S G + + V A+ T + Sbjct: 149 ALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWQGLQHAVINIDDGYGAELVCRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q +G AQN+ + ++ +D + Sbjct: 269 ADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLGKICPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGTALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVEGADKVVITSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464 >gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 10329] Length = 493 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 46/460 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 V+ + +DSR + P F A+ G DG FI A++KGA V+ V + G++ Sbjct: 21 ASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTID 80 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 IPV +D + L+++A +I +TG+ GKTT +++ + + A Sbjct: 81 IIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAA 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182 +G+ N G L + L +S G I+ + Sbjct: 141 VMGTTGN--GFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 V T ++ HL +EE A+AK +F + I D+ K ++A+ Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQAIINVDDEVGAAWAKQLTNAI 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + + Q + IG A N+++ Sbjct: 259 AVSLAPT--TEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFAT 316 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D + + P GR + ++ + +A L Sbjct: 317 LLSLGFDKSDLLATAAQLQPVLGRMELFQAENRAKVVVDYAHTPDA-------LEKALQA 369 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H +G+ A+ G G + + ++ V L+ + Sbjct: 370 LRVHCDGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKD 425 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + + D++++ K Sbjct: 426 MLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKG 465 >gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] Length = 505 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 67/481 (13%), Positives = 150/481 (31%), Gaps = 46/481 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + + + + + + GI DSR I F A+ G DGH+FI +AV GA +++ Sbjct: 4 IFKDTEYKVLKDGKKFEIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMII 63 Query: 70 VNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM 125 ++ + I V+D+ L +A ++K I+ ITG+ GKTT+ + Sbjct: 64 CEKEVDVKQYTNTTEITFVLVEDIRKKLGIIASNYYDYPQNKIKIVGITGTNGKTTSSFI 123 Query: 126 LTIALSSIKKTYACIGS-----YNNHIGVPLT-------LARMPVDVDFGIFELGMSHLG 173 L L + + P + + D+ I E+ SH Sbjct: 124 LENILEKTARIGTTGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEV-SSHAL 182 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI + +++ A+ T + HL +E +AK ++ + + + + Sbjct: 183 EIGRV-DMLQFDSAIFTNLTQDHLDFHKTMENYFNAKKKM-FSMLRNNNSQGVGVINIDD 240 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 AK ++ Y +N + + + M++++ ++ + + Sbjct: 241 EYGAKIYSEKKDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSD 300 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + ++ A ++ E + + N A + Sbjct: 301 GEYKFEINLIGEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETIKNELEARI 360 Query: 354 KAAI--------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 ++ + + R I + G G + ++ Sbjct: 361 VVDFAHTDDGLLNIGKTLKQITDKRVITIFGA----GGDRDHEKRPKMAKAAAKFSDYII 416 Query: 406 LSGFHVL---------ALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 L+ + ++ L + + L D +++ K Sbjct: 417 LTSDNPRTENPVNILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGK 476 Query: 451 S 451 Sbjct: 477 G 477 >gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu009] gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu009] Length = 432 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 50 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 109 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 110 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 169 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 170 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 226 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 227 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 284 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 285 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 344 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 345 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 403 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 404 VLVKASNAAGLGAVADALVAD 424 >gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 146/456 (32%), Gaps = 43/456 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ D+R + P F A+ G H DGHD + A++KGA ++V + + +++ Sbjct: 22 DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNV 76 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V++ A+ LA K +I +TG+ GKTT ++ ++ IG Sbjct: 77 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 136 Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + I D + +S + + + IA Sbjct: 137 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 196 Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V T + HL + + + + + + + Sbjct: 197 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +A + + S + ++ + G V IG NML Sbjct: 257 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D IK+L +GR + + + ++ L I Sbjct: 317 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 369 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417 V+G G+ ++ +A++ ++ ++ S + + A Sbjct: 370 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 426 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E + GDVV++ K Sbjct: 427 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 462 >gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 494 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 76/484 (15%), Positives = 145/484 (29%), Gaps = 55/484 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I + GI DSR + P + F + G DGH+F A KG Sbjct: 1 MNLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAADKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +VV + + +P V D A+ LA A + +I +TG+ GKTTT Sbjct: 61 AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ ++ IG+ G + + E Sbjct: 116 TYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGT 222 + SH E + A+ T + HL +EE + + K + Sbjct: 176 V-SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDES 233 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + A + ++G ++AD + ++ + V S + Sbjct: 234 ARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADVRASNISITAQGTSFHVDTFRGSAD 293 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + + ++ +L +GR + Sbjct: 294 ISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVDEGQPYAVIVDY 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + +VL ++ EGR I V G G + ++ Sbjct: 354 AHTPDG-------LENVLRTVNEFAEGRVITVFG----CGGDRDRTKRPIMGKIAAKYSD 402 Query: 403 HVWLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449 V ++ + ++ L + + GDVV++ Sbjct: 403 VVLVTSDNPRTEDPELILKDIEAGLVEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVLI 462 Query: 450 --KS 451 K Sbjct: 463 AGKG 466 >gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha153] Length = 492 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID332] gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] Length = 492 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 83/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ +G++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] Length = 485 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 153/474 (32%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L I S+ V + DSR + FFAI+G DGH +I V+ GA Sbjct: 3 LQDVLYGITITSLVGNTSREVTALVFDSRKVVKDSVFFAIRGTMSDGHQYIDDTVEAGAS 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 +V+ ++ I V++ AL ++A SK +I ITG+ GKTT Sbjct: 63 VVICE--VLPEIRRELATYIQVENSSVALGQMAANFYGHPSSKLKLIGITGTNGKTTIAT 120 Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170 +L + + + ++ N + VP T + VD + +S Sbjct: 121 LLFKLFRELGYGVGLISTVQNHINDVVVPSTHTTPDPIALNELLQSMVDDGCEYCFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + V + I HL + AK F+ L N DD Sbjct: 181 SHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKKAFFDVLPANAFALTNLDDR 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A ++ + ADF+ + E S+ + L +V +G Sbjct: 241 NGMVMLQNTKATKK----TYALKQLADFK----AKIIENSFSGLHLDIDQADVFFKLVGS 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS EGR Y P Sbjct: 293 FNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSKQQIIGIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +++ +S + I E + G + ++ V L+ + Sbjct: 349 DAVQNVLSTIQDIRKGTEQVITII-----GCGGDRDKTKRPVMAQVACDWSDKVILTSDN 403 Query: 411 VL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + GD++V+ K Sbjct: 404 PRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLAGKG 457 >gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-93-1035] gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 492 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID18] gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] Length = 492 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis 94_M4241A] gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis 94_M4241A] gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu008] gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis 94_M4241A] gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu008] Length = 439 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 57 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 116 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 117 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 176 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 177 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 233 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 234 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 291 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 292 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 351 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 352 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 410 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 411 VLVKASNAAGLGAVADALVAD 431 >gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M01-240355] Length = 492 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA +TG+ GKT+ + L A + + Sbjct: 89 KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] Length = 485 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 55/477 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + G P V GI+ DSR + P FFA++G +G+ F A++KG Sbjct: 1 MKLPHLLKGVP-LLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKG 59 Query: 65 AGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 A VV + + + PV V++ AL A + + + + T Sbjct: 60 ASAVVTDSRKWFEKLSAAGKPVLLVENSRKALATAAANLYGNPQKELKILGVTGTNGKTT 119 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-------------- 169 + + + G L + M Sbjct: 120 TTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVVC 179 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + H + A+ T + P HL +EE AKA++F + + + Sbjct: 180 EVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFRLSKLSVVNRDDP 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + L+A + ++GK + + + + + +++V H+ Sbjct: 240 YGTTLSALRA----VNGGKTVTYGKK----SRNYTIEAIDPEGSVLIGTPKGAVKVKHNL 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N+ ++S L + +A + T Sbjct: 292 KGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVKVPGRMEEVVPGVFVDYAHTPDA---- 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 L+ + GR I V G G + ++ V ++ Sbjct: 348 --------LQKALNALKKACSGRLIVVFG----CGGDRDRTKRPVMGKIAATLADSVIVT 395 Query: 408 GFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV--KS 451 + + +P + E D +++ K Sbjct: 396 SDNPRSEPPEQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKG 452 >gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] Length = 492 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] Length = 490 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 93/472 (19%), Positives = 161/472 (34%), Gaps = 41/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + V +S DSR +AP+ FFA+ G DG F A +KG Sbjct: 1 MRLAELLP--GASLTNDLASLDVAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V ASI PV V DV AL + A R TI+AITG+ GKT+ Sbjct: 59 AVAIVAEGKSAASIE--GAPVIAVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAA 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + ++ A +G+ + + E L S Sbjct: 117 FVRQLFAANGFAAASLGTLGVVAPNGSVYGSLTTPDPINLHETLDGLAASGVTHLALEAS 176 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T ++ HL + + E +AK E+F+ L G + DS Sbjct: 177 SHGLTQRRLDGVRLKAGAFTNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDADS 236 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + I++ G + +L + + + +EV +G+ ++ G Sbjct: 237 DVATEVIAACKARGLKIFTVGSKGES-LKLLRATPKAAATGIEVAHEGRIYKLELPLAGA 295 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ G+ + + A+ AL G+ + G +D ++ + Sbjct: 296 FQTSNALVAAGLAIVCGVSAERALTALEHIEG--APGRLEKVGERNGAPIYVDYAHKPDA 353 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 VL + P GR + V G G + + ++ V ++ + Sbjct: 354 LE-----KVLCALRPAVAGRLLVVFG----CGGDRDAGKRPIMGEIAAKLADLVIVTDDN 404 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + V ++L GD +++ K Sbjct: 405 PRSEDPASIRAAILKGAAGAATVREIGDRASAIRAGVAALNSGDCLLIAGKG 456 >gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] Length = 484 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 59/476 (12%), Positives = 137/476 (28%), Gaps = 49/476 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + + +L+ + ++ + +S+DSR + AF A+KG DG+ +I + Sbjct: 4 IKMKRINQILKFLDIKTLSQN-NFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120 KG LV+ ++ VF + ++ L+ LA K II ITG+ GKT Sbjct: 63 AKGVSLVLTDSHQFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 121 TTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 + + L + ++ + + E Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQNLVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + +A+ + ++ HL ++ AKA++ Sbjct: 179 V--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKK 231 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + + + K K + Sbjct: 232 AIINIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYT 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 M + L S+ I L P +GR + + + Sbjct: 292 TKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTP 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A L ++ + + G G + + ++ S + + Sbjct: 352 DA-------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIII 400 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + + + F + GD++++ K Sbjct: 401 TEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 456 >gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 510 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 84/481 (17%), Positives = 137/481 (28%), Gaps = 47/481 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P W LL+ + + + +DSR P F A+ G G A+ Sbjct: 9 PDWRLSTLLEGFAA--VSPGLDVPLRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALA 66 Query: 63 KGAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +GA V+ V + L +P V + L ++A +I +TG+ GK Sbjct: 67 RGAVAVLWEPAPGVEAPVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTDGK 126 Query: 120 TTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTLARMPV-------DVDFG 163 T+ + L L P L+ V + Sbjct: 127 TSVSQFLAQTLYQESGRCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYT 186 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221 + E+ SH + IAV+T ++ HL +E A A+ + GLE Sbjct: 187 VMEV-SSHALVQGRINGAA-LDIAVLTNLSRDHLDYHDSMEAYAEAKARLFRWPGLETAI 244 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + A+ + + + + + + V S Sbjct: 245 LNLDDAFGRKLAAELAEREVQILGYGLAAASGEIEQVRGESVEYRPDGLAFSVVTPWGSG 304 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + +G N+L L + L + AL R TL Sbjct: 305 RLETGLLGAFNVHNLLAVLAALLQLGLSLTD---ALERLTHVRTVPGRMERFSGGKGATL 361 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + A VL + H EGR V G G L S Sbjct: 362 VVDYAHTPAA----LAQVLQALRMHCEGRLWCVFG----CGGNRDPGKRPLMARASEQFA 413 Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V L+ + + R VH + S GD+V+V K Sbjct: 414 DRVVLTSDNPRHEDPQDIAREVMTGFERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGK 473 Query: 451 S 451 Sbjct: 474 G 474 >gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 493 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 75/473 (15%), Positives = 148/473 (31%), Gaps = 55/473 (11%) Query: 16 GHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 G I P + + + D+ I P +AF A KG + G +I A++KGA + Sbjct: 4 GELIKDWPCTMKGSIRVEIKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAI 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126 VV+ + + L +P+ V + L + + T+IA+TG+ GKTT + Sbjct: 64 VVDDENYFNEADLPVPIIWVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVTHFI 123 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMP-------VDVDFGIFE----------LGM 169 L+ + K IG+ I M ++ F E L Sbjct: 124 GQILNQLDKRAMVIGTNGVFIDREKCYPEMEALTTLQAKNIQFLFKEAIRLDVPYVVLEA 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S +G + I + + H+ + E +K + T+ Sbjct: 184 SSIGLEKHRLDHCDIDIGIFLNVTEDHIEDHGSFERYKLSKQILS-------TLAKKNII 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + FGK + D+ + + +Q + + V +G Sbjct: 237 NSDDSVCRSIGLATKGKRIFFGKGSHVDYFFQTLVDGPASTTCCIQHKKEKHIVNIPLVG 296 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + N+L + ++ L + + EGR + L Y Sbjct: 297 DYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFEHVENQLGLSIVVD----YAHT 352 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +MK + L + + L M G +++ ++ L+ Sbjct: 353 PDAMKMILQTLKKHTKRR-------LIVMFSCGGNRDKAKRPKMGMIASIYADYIILTTD 405 Query: 410 HV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +++ + + GD +V+ K Sbjct: 406 NARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKG 458 >gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] Length = 493 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 149/480 (31%), Gaps = 47/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + +++DSR+I + F A+ G DG FI A+ + Sbjct: 1 MMLLRDLL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56 Query: 64 GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGS 116 G V+V+TD + G + + ++ +A + I+ ITG+ Sbjct: 57 GVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGT 116 Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164 GKT+T ++ ++ ++ K N G + D + Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFAGKGV 176 Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDALRHG 236 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D L ++ +S A F + + + + ++ Sbjct: 237 LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQATLVWPEGEID 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N+L L + + D+ + P GR +R+ A N Sbjct: 297 IRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTADNITLVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L+ + H G V G G L + Sbjct: 357 AHTPDA-------IEQALNALRRHCAGELWCVFG----CGGDRDKGKRPLMGQAAEQCAD 405 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + L + + GDV+++ K Sbjct: 406 RIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKG 465 >gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio cellulolyticus CD2] gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio cellulolyticus CD2] Length = 484 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 73/474 (15%), Positives = 153/474 (32%), Gaps = 52/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++ ++ + VN I+ DSR F ++G DGH FI A++ G Sbjct: 3 LKELIKDLEIVDVTGDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENGTR 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++V ++ I V VDD AL +A ++ +TG+ GKTTT Sbjct: 63 ALLVQREVEV---PEGITVIRVDDTRYALASVADKFHGHPSGDFNLVGVTGTKGKTTTTY 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169 M+ L + IG+ +N IG + M + + + Sbjct: 120 MIKSILEMYGQKTGLIGTISNKIGDEVLPTDRTTPESYDLQELFGEMVEKQVNSVV-MEV 178 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S I V T ++ HL E +AK ++ + Sbjct: 179 SSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKL-------FKMCKKGLI 231 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + K +Y+FG +AD + + + +V + ++ + G Sbjct: 232 NVDSEYGRKVVENAECEVYTFGIDSSADIRAVDIVKHPDSVEFKVITPWFTGDIAVNIPG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L +G +++ ++ K L +T+I + Y + Sbjct: 292 KFSVYNALGAIGSCALMGIPLEYIQKGLKNVTVPGRA----EVVQTGTDYTIIID-YAHS 346 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P S++ ++ + +P + + G + +S ++ Sbjct: 347 PDSLENILTTVKGYAPAR-------VISLFGCGGDRDKTKRPIMGEISGKLADFTVITSD 399 Query: 410 HVL---------ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 + +++ + ++ + + D++V+ K Sbjct: 400 NPRTEEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKG 453 >gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister microaerophilus UPII 345-E] gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister microaerophilus UPII 345-E] Length = 498 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 74/486 (15%), Positives = 154/486 (31%), Gaps = 52/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL I + I+ DSR + F + G H DGH ++ AV+K Sbjct: 1 MKNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA ++ + + V V + + K+A +IA+TG+ GKTT Sbjct: 61 GAIAIIAEKKISV---PEGVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGM 169 T +++ L IG+ + IG + + + M Sbjct: 118 TTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKAKVTHVCM 177 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG------LEKTG 221 S + AV + + HL + A+AKA++F ++ Sbjct: 178 EVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKPNK 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + ++ + +++F +++A+ ++ + + + + K Sbjct: 238 NACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKNKEY 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G N++ + D + IKAL+ F GR + Sbjct: 298 PVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPGRFELIDEGQEFSVVVD 357 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + ++L+ G+ I V G G + ++ Sbjct: 358 YAHTPDG-------LENILTTAREITTGKIIVVFG----CGGDRDPMKRPIMGRIAAKYS 406 Query: 402 SHVWLSGFHV-------------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 ++ + +K+ + + D+V Sbjct: 407 DIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIV 466 Query: 448 VV--KS 451 ++ K Sbjct: 467 IIAGKG 472 >gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase [Rhizobium etli CIAT 652] gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CIAT 652] Length = 506 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 76/460 (16%), Positives = 143/460 (31%), Gaps = 38/460 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ G ++G+S DSR++AP AF A+ G DG FI A +GA + + + Sbjct: 34 LEAQLEGPAGLLDISGLSSDSRNVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQP 93 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + A SIPV V + L+ A R T++A+TG+ GKT+ + Sbjct: 94 VDA-----SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179 A IG+ + + + + S G + Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+ A T + H+ +E +AK +F+ L G + + D + K+ Sbjct: 209 DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSRQAVKA 268 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + G+ + R +Q + + Sbjct: 269 AVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEIFEVDI----PLAGDFQVANA 324 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + A++ G R + L Y P ++ +V Sbjct: 325 LVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 381 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413 L+ + P GR + V G G + ++ V ++ + Sbjct: 382 LNSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 437 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GD ++V K Sbjct: 438 RAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 477 >gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi JD1] Length = 508 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + +KD + + + S GD+V Sbjct: 414 ILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] Length = 493 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 46/460 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 V+ + +DSR + P F A+ G DG FI A++KGA V+ V + G++ Sbjct: 21 ASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTID 80 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 IPV +D + L+++A +I +TG+ GKTT +++ + + A Sbjct: 81 IIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAA 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182 +G+ N G L + L +S G I+ + Sbjct: 141 VMGTTGN--GFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSL 198 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 V T ++ HL +EE A+AK +F + I D+ K ++A+ Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCAQAIINVDDEVGAAWAKQLTNAI 258 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + + Q + IG A N+++ Sbjct: 259 AVSLAPT--TEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFAT 316 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D + + P GR + ++ + +A L Sbjct: 317 LLSLGFDKSDLLATAAQLQPVLGRMELFQAEHRAKVVVDYAHTPDA-------LEKALQA 369 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H +G+ A+ G G + + ++ V L+ + Sbjct: 370 LRVHCDGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKD 425 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + + D++++ K Sbjct: 426 MLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKG 465 >gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] Length = 492 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 84/478 (17%), Positives = 146/478 (30%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + +L I +++DSR + + F A+ G DG D+I A Sbjct: 1 MTASASHQHILDRINAALPETAWPNMNGHMTLDSRKVGEGDIFVALPGVQRDGRDYIKQA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116 + +GA LV+ + + V D+ L LA + ++A+TG+ Sbjct: 61 LAQGAALVLAEANDFNISTDADSSSRIMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGT 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACI------------GSYNNHIGVPLTLARMPVDVDFGI 164 GKT+ E + L ++ C+ + N V ++ GI Sbjct: 121 NGKTSVVEFVGQLLRALGVEAGCVGTLGSRLEAAPADAMNTTPDVLTINHQLADWQHQGI 180 Query: 165 FE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L S + + H V T + HL + A+AK +F Sbjct: 181 KHVALEASSHALHQGRLASLSLHTGVFTNLTRDHLDYHGNAADYAAAKLSLFNTFNLKRA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 IF D ++L + T+ + + QS + E Sbjct: 241 IFNADDPVASQVLAVAGASAIGITLEGAEAHVQVAIRSMRPMLLEIQS------PWGAAE 294 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G A N++ + V+ L D A P GR +R + N+ Sbjct: 295 INLALSGRFNAFNVVAAIVAVTGLGHDFHRVCAAAESLKPVPGRMERILMSGNRLAVVDY 354 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A S L + +GR V G G S L + Sbjct: 355 AHTPDA-------LESALQTLRGETKGRLWVVFG----CGGDRDSGKRSLMGRSAARWAD 403 Query: 403 HVWLS-----GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 H+ ++ G + + + + GD V+V K Sbjct: 404 HIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAEAIRHALALAESGDTVLVAGKG 461 >gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 151/462 (32%), Gaps = 46/462 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79 + V + +DSR + + F AI G DG +I A+++GA V+ + G Sbjct: 19 ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGL 78 Query: 80 ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 ++ + ++ + L++LA + ++I +TG+ GKTT +++ L + Sbjct: 79 VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 138 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 A +G+ N G L + L +S G ++ Sbjct: 139 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 196 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ V T ++ HL +E A AK +F + I D+ + + Sbjct: 197 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 256 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G+ S + L +S + ++ G + H + L Sbjct: 257 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 312 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++L VD S + G+ +N ++D ++ + L Sbjct: 313 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 367 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 + H G A+ G G + ++ HV L+ + Sbjct: 368 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPAMIV 423 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L R + + D++++ K Sbjct: 424 QDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 465 >gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] Length = 499 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 98/509 (19%), Positives = 169/509 (33%), Gaps = 57/509 (11%) Query: 4 LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + T DL+ + + G P V+ ++ DSR A+FA++G DGH FI A+ Sbjct: 1 MMTLEDLIGLLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFISDAL 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 KG G+VV + V D AL A +I +TG+ GK Sbjct: 61 SKGVGVVVCEE--IPVSVDERCCYIRVADCRTALAAAAAEWFGHPASSLRVIGVTGTNGK 118 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163 TTT ++ L IG+ IG L + + Sbjct: 119 TTTARLIRTMLDRSGVKTGYIGTGQALIGDESIVLERTTPEAMDLHALFRKMVNCGCEAV 178 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ SH + + + AV T + P HL + ++E SAK +F + G Sbjct: 179 VMEV-SSHALVLHRTEGIS-FYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQVAPDGFG 236 Query: 224 FLNYDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +N DD++ ++ + FG + + + R + + S + VQ+ G+ Sbjct: 237 IVNADDAWGSMMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSVTVQMNGR 296 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + N++ L I+S A + A + R + G Sbjct: 297 ACRAS---FLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPVSDDGGL 353 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 Y P +++ I L+++ P + I V G G L ++ Sbjct: 354 FSAIVDYAHTPDALEKVIGALNEVRP-ADSSLIVVFG----CGGDRDRSKRPLMGGIAAA 408 Query: 400 NISHVWLS-----GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 HV L+ + DA+ I + L GD++++ Sbjct: 409 GADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDLLLIAG 468 Query: 450 --------KSSNSCGF---YRLINLLLEE 467 F + L E Sbjct: 469 KGHECYQESGGRKSYFSDREVVARALQER 497 >gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA 1090] gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] Length = 492 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-208] Length = 339 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 120/337 (35%), Gaps = 23/337 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 4 MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 64 AVAIIAE-----NQLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL ++E A+AK+ +F L + Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 238 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + +FG + ADF+ + S S ++ V Sbjct: 239 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDLATPVGEYTVKIK 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 IG N+L + L ++ AI L Sbjct: 299 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGV 335 >gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 486 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 82/456 (17%), Positives = 139/456 (30%), Gaps = 60/456 (13%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + P + F A+ G G+ FI A+ +GA VV + V + Sbjct: 17 VRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFVVASEPAGQD------RVLHHE 70 Query: 90 DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + AL +LA A R ++ +TG+ GKTTT +L +SI +G+ N Sbjct: 71 NPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTVNYRW 130 Query: 148 ---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 + LARM + SH + + L + H+AV T + Sbjct: 131 PGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAGI-DIHVAVFTGL 189 Query: 193 APAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL + IE+ A K + +N DD L + + + Sbjct: 190 SRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGE-----APRVMGY 244 Query: 251 GKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 G KN +L+ S S Q + ++ GI GI L Sbjct: 245 GLQKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQGAGICLGL 304 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + +K L + + + ++ ++K Sbjct: 305 EPEHFDCLKDLGPIPGRLEKVPAPEGINIYVDYAHTPDALENVCLALKELSFSR------ 358 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDA 417 L + G + V+L+ G + + Sbjct: 359 --------LAVLFGCGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGEIIKDILPG 410 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L V S L G+ ++V K Sbjct: 411 LAGHPCVEVEPDRRQAIQKAVSLLAPGEALLVAGKG 446 >gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 481 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 79/469 (16%), Positives = 145/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L A V GI+ S ++ F A+ G DG ++ A+Q+G Sbjct: 1 MRLSDVLPA-GIEPPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A +V+ + + VD+ AL K+A R +A+TG+ GKT+ + Sbjct: 60 ASAIVIGK-GKGVTVPAGVALIEVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVAD 118 Query: 125 MLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMS 170 +S+ K + + D G+ L S Sbjct: 119 FTRQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLADEGVTHLAFEAS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + V A T + H+ E +AK +F L + G + D Sbjct: 179 SHGLDQNRLDGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDG 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 A + + + G+S + + + Q + + G+S +V +G Sbjct: 239 ARSADVAAAAKARGLRVMTVGQSGDTLKRTSLTRDGF-QQRIGILFDGRSFDVRLPLVGA 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + +N L+ G+ D + AL GR + ++ Sbjct: 298 YQVENALVAAGLAIATGEKADAVLAALESLKGVPGRLEIIGERNGGLAVVDY--AHKPEA 355 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 + L P GR I+V G G + +S+ ++ Sbjct: 356 LAA-----ALDACRPFVTGRLISVFG----CGGDRDKGKRPIMGRISVEKADVTIVTDDN 406 Query: 409 ---FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + L + S + GDV ++ K Sbjct: 407 PRSEDAASIRAEILAGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKG 455 >gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides KD131] gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rhodobacter sphaeroides KD131] Length = 495 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%) Query: 11 LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L A+ G V G+++DSR + P F A+ G G F+ A+ GA ++ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 70 VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + A + +D L A R AT++A+TG+ GKT+ Sbjct: 68 TDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172 +++ IG+ P+TL R+ + + S Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + V A T HL E +AKA +F + + D Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A + + G +AD +L + + + QG+ IG Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+ + + + S GR + N +D ++ + + Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGA-SVFVDYAHTPDALA 366 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 L + PH GR + V G G L + + ++++ Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417 Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + H L +L GD +++ K Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464 >gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 492 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 79/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEEATHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D+ EL+ +Y +G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ ++ ++ Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLE 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464 >gi|215403547|ref|ZP_03415728.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis 02_1987] gi|289745432|ref|ZP_06504810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis 02_1987] gi|289685960|gb|EFD53448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis 02_1987] Length = 463 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 81 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 140 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 141 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 200 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 201 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 257 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 258 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 315 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 316 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 375 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 376 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 434 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 435 VLVKASNAAGLGAVADALVAD 455 >gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus bovienii SS-2004] gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus bovienii SS-2004] Length = 495 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 138/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL P+ + +++DSR A + F A+KG DG ++I A+ +G Sbjct: 5 NLRDLL----APWGVDTPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ G++ +PV +DD+ L+KLA + + + Sbjct: 61 AAVIAEAKGKTDNGTIQAMHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + + Sbjct: 121 TTTTQLLAQWSQGLGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E AK +F + I Sbjct: 181 AMEVSSHGLVQGRVAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQKIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD + L + + K+ + + + + + + Sbjct: 241 ADDDVGQKWLTRLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLN 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + ++A S P GR + + Sbjct: 301 SPLMGAFNVSNLLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDRPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A LS H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALSAARLHCKGQLWCVFG----CGGDRDKGKRSLMGGIAEQGADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + DVV+V K Sbjct: 410 IVTDDNPRSEEPHSIVEDILTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKG 467 >gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA6140] Length = 492 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu004] gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu004] gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Mycobacterium tuberculosis CDC1551A] Length = 431 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 49 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 108 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 109 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 168 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 169 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 225 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 226 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 283 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 284 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 343 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 344 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 402 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 403 VLVKASNAAGLGAVADALVAD 423 >gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17029] gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17029] Length = 495 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%) Query: 11 LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L A+ G V G+++DSR + P F A+ G G F+ A+ GA ++ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 70 VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + A + +D L A R AT++A+TG+ GKT+ Sbjct: 68 TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172 +++ IG+ P+TL R+ + + S Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAMEASSH 187 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + V A T HL E +AKA +F + + D Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A + + G +AD +L + + + QG+ IG Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+ + + + S GR + N +D ++ + + Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGA-SVFVDYAHTPDALA 366 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 L + PH GR + V G G L + + ++++ Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAAEHADVLYVTDDNPR 417 Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + H L +L GD +++ K Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464 >gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] Length = 477 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 78/458 (17%), Positives = 133/458 (29%), Gaps = 53/458 (11%) Query: 23 PQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 P + GI+ D+R + F IKG +DGHD + KG VV D+ Sbjct: 16 PDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDAAQQMLDKGCAAVVCERDLGLE---- 71 Query: 82 SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 V D A L A + +I +TG+ GKTT ++ LS Sbjct: 72 --RQIIVTDTRAAFPMLCSAWFGHPERELELIGVTGTNGKTTITTVIKKVLSGFGFKVGL 129 Query: 140 IGSYNNHIG---------VPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 IG+ N IG P R D + +S G + Sbjct: 130 IGTCQNEIGDKIIPTARTTPEPYDLFELFRKMADEGCKYTVMEVSSQGLEQKRVQGCHFK 189 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + T + HL +E AK +F+ + + + + Sbjct: 190 AGIFTNLTQDHLDVHGTMENYYQAKKMLFDICD-------TAIINTDDEYGRRYVTEIPC 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++ + ADF+ + V + G N L + + + Sbjct: 243 PYKTYSVNGKADFRAEDVMLGTTGVKYVFCDGKVKKNVSFNMPGLFNVSNSLAVIACMEV 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L IK GR FT+I + + A I+VLS I Sbjct: 303 LGFTPCNTIKEFEKIQGVRGR---AEIIPTGRDFTVICDYAHTPDA----LINVLSAIKE 355 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419 +G+ + G G + + + ++ + + D L Sbjct: 356 GSKGKVKCLFG----CGGNRDRTKRAPMAAAAAEHADFLIVTSDNPRDEDPDDIINDVLK 411 Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + D++V+ K Sbjct: 412 GLEGKDTPYVRMTDRREAIHWAIKNAEKDDIIVLAGKG 449 >gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] Length = 496 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 77/479 (16%), Positives = 133/479 (27%), Gaps = 49/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ + G + + I DSR F I G H D H FI + GA Sbjct: 5 LEELVALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGAR 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ V + V V ++ AL+ + +I ITG+ GKTTT Sbjct: 65 AVLTERASVD--VPDGVAVLYVPNLQEALDTIVPYFYDYPARAMRVIGITGTNGKTTTSY 122 Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVP-------------LTLARMPVDVDFGIFELG 168 ++ L I + +P + +D + E+ Sbjct: 123 LVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEV- 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA-SAKAEIFEGLEKTGTIFLNY 227 SH + + + A T + HL +E A + Sbjct: 182 SSHALALGRVAGI-EFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKEGKTA 240 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHH 286 + + A + ++G AD + + + + + GK + Sbjct: 241 VLNADDAASETMRAHTHCPVITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFHLHTG 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N+L +G + AL+ F GR + R + + Sbjct: 301 ITGLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELVREGQDFAVIVDYAHTP 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL +GR IAV G G + + L Sbjct: 361 DG-------MENVLRTARAVTKGRIIAVFG----CGGDRDRTKRPIMGRIGAEMADIAIL 409 Query: 407 SG-----FHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ + + R GD VV+ K Sbjct: 410 TSDNPRTEDPAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKG 468 >gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] Length = 492 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parvularcula bermudensis HTCC2503] gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parvularcula bermudensis HTCC2503] Length = 480 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 81/467 (17%), Positives = 143/467 (30%), Gaps = 37/467 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL+ + GH + G++ DSR + P F A+ G DG +I Sbjct: 1 MRLSDLI-PLDGHL-----DAEITGLTADSRQVKPGFLFAALPGETTDGRRYIDQ----- 49 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + + ++PV D+ AL LA I+ +TG+ GKT+ Sbjct: 50 AIAAGAAAILAPTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGVTGTNGKTSVAR 109 Query: 125 MLTIALSSIKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMS 170 + S+ + A Y P + V + +S Sbjct: 110 FVAQLWSAFGHSAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAAMGTTHLAMEVS 169 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR A T I HL E +AK + L + D Sbjct: 170 SHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLPETGQAVITTDG 229 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + + G+ L + +G + V IG Sbjct: 230 AGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEGPAQSVALSLIGD 289 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N L+ G+V A+ + I+A++ GR + +G Y P Sbjct: 290 FQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGMASAFVDYAHTP 349 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++ A+ + GR + V+G G L + V ++ Sbjct: 350 DAIATALRAIK--PHVPGGRVVVVIGA----GGDRDRTKRPLMGRAAAAGADLVIVTDDN 403 Query: 409 ---FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKS 451 A++ + + +L GDV++V Sbjct: 404 PRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTG 450 >gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] Length = 392 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 10 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 69 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 70 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 129 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 130 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 186 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 187 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 244 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 245 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 304 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 305 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 363 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 364 VLVKASNAAGLGAVADALVAD 384 >gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 496 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 140/479 (29%), Gaps = 49/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + G I Q + I DSR F I G H D H FI + GA Sbjct: 5 LEELAALLPGARIVGDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGAR 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 V+ V + V V ++ AL+ + ++ ITG+ GKTTT Sbjct: 65 AVLTERASVD--VPAGVAVLYVLNLEKALDTIVPFFYDYPARVMRVVGITGTNGKTTTSY 122 Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVP-------------LTLARMPVDVDFGIFELG 168 ++ L I + +P + +D + E+ Sbjct: 123 LVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEV- 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNY 227 SH + + + AV T + HL +E A AKA +FE + G Sbjct: 182 SSHALALGRVAGI-EFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTA 240 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHH 286 + + A I ++G AD + + + + + GK + Sbjct: 241 VLNADDAASETMRAYTRCPIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFHLHTG 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N+L +G AL+ F GR + R + + Sbjct: 301 ITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELVREGQDFAVIVDYAHTP 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL +G IAV G G + + L Sbjct: 361 DG-------MENVLRTARAVTKGHIIAVFG----CGGDRDRTKRPIMGRIGAEMADIAIL 409 Query: 407 SGFHVL-----ALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + R GD VV+ K Sbjct: 410 TSDNPRTEDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKG 468 >gi|296166025|ref|ZP_06848476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898624|gb|EFG78179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 444 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 154/378 (40%), Gaps = 22/378 (5%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L + + A GS+NN +G P T+ R D+ + E Sbjct: 38 GLTIIGITGSSGKTSTKDLVAAVLEPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLVLE 97 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA K+E+ + + +G + LN Sbjct: 98 MSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIARTKSELPQAVPSSGVVVLN 157 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284 DD + + A ++ S E + L + + Sbjct: 158 VDDPMVAAMARVTDAWVVRVSRSSHTDSGPSDVWADGVSLDELARPRFTLHAMNAQGTVE 217 Query: 285 ----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L + A V+ AL P + T Sbjct: 218 VGVQLGVYGDHQVTNALCAGAVALQCGATVEQVATALEQAGPVSRHRMHVTTRADGV--T 275 Query: 341 LIDESYNANPASMKAAISVLSQISPHGE----GRRIAVLGDMCEMGELSQSFHIDLAEVL 396 +ID++YNANP SM+A + L+ I+ R AVLG+M E+G+ + + H + + Sbjct: 276 VIDDAYNANPDSMRAGLQALAWIAHGAGAGERRRSWAVLGEMAELGDDAVAEHDRIGRLA 335 Query: 397 SLYNISHVWLSGF--HVLALKDAL-------PRSIHV-HYSETMDGLFLFIQSSLVDGDV 446 ++S + + G + A+ D +++ L GDV Sbjct: 336 VRLDVSRLVVVGTGRSMSAMHHGAVMEGSWGASGERGAVSVADADAALALLRAELRPGDV 395 Query: 447 VVVKSSNSCGFYRLINLL 464 V+VK+SN+ G L + L Sbjct: 396 VLVKASNAAGLGTLADAL 413 >gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi 80a] Length = 508 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + +KD + + + S GD+V Sbjct: 414 ILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLV 468 >gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 483 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 89/478 (18%), Positives = 148/478 (30%), Gaps = 50/478 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ + DLL+ + + G++ DSR + F A+ G DG FI A Sbjct: 1 MSAI-RLSDLLR------RDVAADPVITGVTADSRKVTSGSLFVALPGTAADGRAFIPQA 53 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + +GA V+ D L + DV A A AT +A+TG+ GKT Sbjct: 54 LSQGAAAVLAPQDTPDGAAPL---LVRSGDVRRAYALAARGFYGAQPATCVAVTGTNGKT 110 Query: 121 TTKEMLTIALSSIKKTY-------------------ACIGSYNNHIGVPLTLARMPVDVD 161 + +++ G + G L + Sbjct: 111 SVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARLLATLAEGG 170 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 L S G + V A T + HL + +AK +FE L G Sbjct: 171 VTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLFESLLPRG 230 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + DS A + + + G+ + D L + + E + + ++G Sbjct: 231 RTAVLNADSDAYNAFAAASIMSGLGVMGVGE-RGRDLSLIERRAVPEGQRLILDVRGDRH 289 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V+ G A N L+ G+ D + AL GR + Sbjct: 290 DVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGR---LQRVSGGRGEAY 346 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + VL + PH GR I V G G L ++ Sbjct: 347 VDYAHTPDGLET-----VLKALRPHATGRLIVVFGA----GGDRDKGKRPLMGGIAGRLA 397 Query: 402 SHVWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ ++ + + + DGDVVVV K Sbjct: 398 DVAIVTDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKG 455 >gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sp. HGF1] Length = 459 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 189/463 (40%), Gaps = 31/463 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SI-APQEAFFAIKGPHYDGHDF 56 M T +L I+G I + ++ R I P F ++ H Sbjct: 1 MKA-HTLGKILTVIKGTIIQGNSDILIKDVA---RYYEHIEQPNTLLFLVQ------HRN 50 Query: 57 ILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 I ++ A VVV+ ++ V V D+ A + R ++A Sbjct: 51 ID--FKRIAQYCPCAVVVDREVKELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVA 108 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TG+ GKTTTK+M+ LS+ K + S N + + L R+ + ++E + Sbjct: 109 VTGTSGKTTTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAP 168 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G+I + P+I +IT I HL ++ +AKAE+ + + GT+ LN DD Sbjct: 169 GDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLILNADD--- 225 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E +K + I FG FQ + + L ++ G G H Sbjct: 226 EKIKTIDTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQ 285 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L L + + A +ALS F T+ID+++N N AS Sbjct: 286 VYNALAALAATHEMGIGITQAAQALSSFKLLMN---HCEIKKGLNQATIIDDTWNINTAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 +KAA++ L +++ + +A++G + ++GE S +H ++ ++++ +NI ++ G Sbjct: 343 LKAAMNTLCELNQQHKK--VALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLAN 400 Query: 413 ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + V E +G++ + L + +++K S Sbjct: 401 NIATECSLNGFHGKVFQFEQTEGVYELLSDILNEETTLLIKCS 443 >gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis audaxviator MP104C] gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 499 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 94/477 (19%), Positives = 156/477 (32%), Gaps = 49/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 F DL+ + V V GI+ DSR P F AI G DGH F+ AV +G Sbjct: 1 MNFRDLINHLNVLEHSPVLDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V++ + + V D L A ++ +TG+ GKTTT Sbjct: 61 AAAVLLQQKVPV---PEGVAWAVVPDTRKGLALAASRFYGEPGRALRLVGVTGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167 ++ + + IG+ +N IG + L RM + Sbjct: 118 THLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDVVLE 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 SH + + L AV T + HL + E+ +AKA++F GL + +N Sbjct: 178 VSSHALRLSRVHGLS-FEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGLGEEAAAIINR 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + L L ++ + AD + + ++ + S V Sbjct: 237 DDPYGVRLLD----LTRGCRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPVALRL 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L + + + L GR + +T+I + Y Sbjct: 293 SGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGR---FERVDQGQEYTVIID-YA 348 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ + +I+P GR I+V G G L +S + L+ Sbjct: 349 HTPDGLENLLRAAREIAP---GRLISVFG----CGGDRDRTKRPLMGAISARGADYSVLT 401 Query: 408 GFHVL---------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +++ R GDVV++ K Sbjct: 402 SDNPRTEDPLAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKG 458 >gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] Length = 493 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 151/462 (32%), Gaps = 46/462 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79 + V + +DSR + + F AI G DG +I A+++GA V+ + G Sbjct: 19 ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGL 78 Query: 80 ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 ++ + ++ + L++LA + ++I +TG+ GKTT +++ L + Sbjct: 79 VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 138 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 A +G+ N G L + L +S G ++ Sbjct: 139 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 196 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ V T ++ HL +E A AK +F + I D+ + + Sbjct: 197 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 256 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G+ S + L +S + ++ G + H + L Sbjct: 257 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 312 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++L VD S + G+ +N ++D ++ + L Sbjct: 313 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 367 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 + H G A+ G G + ++ HV L+ + Sbjct: 368 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPAMIV 423 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L R + + D++++ K Sbjct: 424 QDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 465 >gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] Length = 509 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 82/480 (17%), Positives = 160/480 (33%), Gaps = 43/480 (8%) Query: 3 PLWTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 P +LL + S+ + + G++ +S + + F + G DG DF Sbjct: 9 PNMKLRELLAKVSSISLTNNYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDFWKS 68 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 A+ GA +V+ + + V V D+ ++A A K ++ ITG+ Sbjct: 69 AIANGAVGAIVSVSAATKHPAKNECVIPVADMSQTCPEIAAAFYDYPGQKMKMVGITGTN 128 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------- 166 GKTTT ++ L++ + A G+ P F + Sbjct: 129 GKTTTTHLVEFILNNAQLPTALFGTLYMRW--PGFQKTAAYTTSFPVELQNQLAQALAAG 186 Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + +S + +AV T + HL +++ AKA +F G Sbjct: 187 SKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSDYLKG 246 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + + L A+ + + + + + D + + M Sbjct: 247 RAIVNADDPYGQKLIARLESEKVWSYSTSDT--STDLWASDLEYKPTGVKGMLHTPKGEM 304 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +G + NML +G L D+ + LS F GR +R + Q + Sbjct: 305 IFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDVSVI 364 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + ++L P GR I V G G+ ++ + ++ + + Sbjct: 365 VDYAHTPDSLE-----NLLKAARPFIPGRMICVFG---CGGDRDRTKRPKMGKIAAELSD 416 Query: 402 SHVWLSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V S + + + + + GD V++ K Sbjct: 417 LAVVSSDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKG 476 >gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis T85] Length = 384 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 2 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 61 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 62 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 121 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 122 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 178 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 179 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 236 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 237 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 296 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 297 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 355 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 356 VLVKASNAAGLGAVADALVAD 376 >gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 495 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 135/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + + +DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWVQDTPARALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V + A+ G++ +PV + ++ L+ LA + + I + Sbjct: 61 AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVDQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E +AK +F + Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSEHRVGQMVIN 240 Query: 226 NYDDSFFELLKAKSHA-LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A + + + + + E+ Sbjct: 241 ADDEVGLRWLAKLPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFDSSWGHGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G NML+ L + L +D I A S P GR + + Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V + DVV+V K Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467 >gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae CWL029] gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae J138] gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae TW-183] gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae CWL029] gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae J138] gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae TW-183] Length = 483 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 44/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL +Q G V V ++ DSR ++ + F A KG YDG+DF + A+ G Sbjct: 1 MDLKELLHGVQAKIYGKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 A + + LS+ ++ +L+ SK I +TG+ GKTT Sbjct: 61 AIAIASS----LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167 ++ L S +K +G+ + +G + LA M + + Sbjct: 117 TCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVV-M 175 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S +G AV+T I HL E +AKA++F + +G + +N Sbjct: 176 EVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPSGMVVINT 235 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + ++ + ++G AD++ + S + + + + Sbjct: 236 DSPY----ASQCIESAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSF 291 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG + N+L + V + + Y Sbjct: 292 IGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPCPVYID----YA 347 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ ++ L ++ P GR I V G G L + V S Sbjct: 348 HTPDALDNVLTGLHELLPE-GGRLIVVFG----CGGDRDRSKRKLMAQVVERYGFAVVTS 402 Query: 408 G----FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S D D+V++ K Sbjct: 403 DNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKG 455 >gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] Length = 499 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 80/454 (17%), Positives = 166/454 (36%), Gaps = 47/454 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V I DSR + F A++G H DG D+I A+ G ++V S+ + Sbjct: 34 VTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESLSDE-VAWL 92 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D A+ LA R + TI+ +TG+ GKTTT + + + A + Sbjct: 93 TVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVC 152 Query: 145 NHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 IG + R VD + +S ++ + + +A+ T Sbjct: 153 IRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFT 212 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL ++ +AK +F+ L +N DD ++ A ++++ Sbjct: 213 NLTRDHLDYHGTMQAYIAAKKLLFDNLSPDAYALVNADDRNGSVMVQNCAA----HLHTY 268 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +AD+ + Q + S + + + EV +G + A N+ G+ +L D+ Sbjct: 269 AMRSHADYMSQLLGQYVDGSTLLLDNE----EVEIKLVGSYNAYNVTAVYGVARLLLPDL 324 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D ++ + + G+ A +G+ ++D ++ + ++L +S + Sbjct: 325 DKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALE-----NLLKTVSELNASQ 379 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRS 421 V+G G ++ + ++L+ + + + + +P+ Sbjct: 380 VYVVVGA----GGDRDMGKRPEMGRIAYNMCNCLYLTSDNPRSEDPQTIIDQMLEGIPQV 435 Query: 422 IHVHYSET--MDGLFLFIQSSLVDGDVVVV--KS 451 ++ GD+VV+ K Sbjct: 436 ERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469 >gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides 2.4.1] gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides 2.4.1] Length = 495 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%) Query: 11 LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L A+ G V G+++DSR + P F A+ G G F+ A+ GA ++ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 70 VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + A + +D L A R AT++A+TG+ GKT+ Sbjct: 68 TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172 +++ IG+ P+TL R+ + + S Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + V A T HL E +AKA +F + + D Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A + + G +AD +L + + + QG+ IG Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+ + + + S GR + N +D ++ + + Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGA-SVFVDYAHTPDALA 366 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 L + PH GR + V G G L + + ++++ Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417 Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + H L +L GD +++ K Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464 >gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] Length = 494 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 155/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H F + V +G Sbjct: 1 MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 +VVVN ++ ++ V D L + LA + T +TG+ GKT+ Sbjct: 61 CSIVVVNREL---KLKGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLTLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G + A F + K+ + E S V + Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V +++ I A++ P L +L + Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ V +V + Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458 >gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] Length = 494 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 147/476 (30%), Gaps = 47/476 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + LLQ + V ++G+ DSR + +AF A+ G +I A+ GA Sbjct: 5 SLSTLLQ--GIAPVPSVFDVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGA 62 Query: 66 GLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 ++++ + + + V + L K+A +I +TG+ GKT+ Sbjct: 63 TVILLESAQPDECYEHEGVLIVPVTALRAHLGKIADRFFEHPSQRLRLIGVTGTNGKTSV 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 + L IG+ G+P L + Sbjct: 123 SHYIATLLQETGTPCGVIGTLG--YGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAA 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + + AV T + HL ++ +AKA +F E + Sbjct: 181 MEVSSHALEQGRVDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLFHREELHFAVINF 240 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD F L K + YS + + L ++ + V V Sbjct: 241 -DDPFGRQLYEKLDGKCDRVRYSLHE-AQTELWLTEFAPSIDGFSASVDGLWGRFNVSAR 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + V L V+ +A+ P GR + + + + + Sbjct: 299 VLGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPFAGSNDVRVVVDYAHTP 358 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A S L+ + PH GR V G G + + V + Sbjct: 359 DA-------LNSALAALRPHVGGRLFCVFG----CGGDRDTGKRPEMAREAERGADVVIV 407 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + S V GD+V+V K Sbjct: 408 TDDNPRSEDPDAITSDIVAGFEHPEQIAVIHDRAEAIRQAIHSAVAGDIVLVAGKG 463 >gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823] gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823] Length = 762 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 4/219 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFIL 58 M ++ + IG + + I DSR I FFA+ G G++FI Sbjct: 1 MRLNYSIEACASIFEATIIGSSSE-SITHIYFDSRKIQQANGALFFALSGHSRSGNEFIE 59 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 +A Q+G V+ + + F V++ L AL +LA R + ++AITGSVG Sbjct: 60 NAYQQGIRFFVIAKNASSKFHP-DALYFQVEEPLTALQQLATHHRKQYTYPVVAITGSVG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KTT KE + +S K S+N+ IGV L+L M + E G+S GE++ L Sbjct: 119 KTTFKEWIFHCISDKFKVVRSPKSFNSQIGVALSLLEMHENASIAFIEAGISKPGEMKIL 178 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 +++P + T AH NF+ EE K +F Sbjct: 179 RDMIQPDFGIFTAFGKAHRENFADNEEHLLEKWTLFREC 217 >gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus thuringiensis str. Al Hakam] gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus thuringiensis str. Al Hakam] Length = 258 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 6/226 (2%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGH+++ ++ Sbjct: 16 MNLKKLEEVINGGGLHESFHHLEIHGVRIDSKNIKEGNVFVPII--RVKDGHEYVKESMD 73 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA + +P+ VDD L AL +LA R +I ITGS GKTT Sbjct: 74 NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 131 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 K+++ LSS + + G++N+ IG+PLT+ M + +F I E+GMS G Sbjct: 132 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIERFTW 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + F + S + E ++ Sbjct: 192 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 237 >gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum WCFS1] gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum WCFS1] Length = 550 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 146/456 (32%), Gaps = 43/456 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ D+R + P F A+ G H DGHD + A++KGA ++V + + +++ Sbjct: 79 DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNV 133 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V++ A+ LA K +I +TG+ GKTT ++ ++ IG Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193 Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + I D + +S + + + IA Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253 Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V T + HL + + + + + + + Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +A + + S + ++ + G V IG NML Sbjct: 314 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 373 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D IK+L +GR + + + ++ L I Sbjct: 374 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 426 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417 V+G G+ ++ +A++ ++ ++ S + + A Sbjct: 427 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 483 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E + GDVV++ K Sbjct: 484 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 519 >gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] Length = 508 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 145/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V AV T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 463 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 77/448 (17%), Positives = 136/448 (30%), Gaps = 48/448 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 I+ +S+ + FFAI+G DGHDFI A++KGA VV + V Sbjct: 12 NITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPFKDFKN-----IIVV 66 Query: 89 DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 +D A + A +I +TG+ GKT+T ++ LS K Y Sbjct: 67 EDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKGGIIGTMYYKL 126 Query: 147 IGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + V +S + + + V T + Sbjct: 127 GNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLRVYPTKFFATVFTNLT 186 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E +AK +F+ E LN DD + +L + I YS Sbjct: 187 QDHLDYHKTMENYFNAKRRLFKDYE-YEVCVLNIDDDYGSMLYEEFKDKAITYGYSENAH 245 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 D+ ++ K + + ++ G + + Sbjct: 246 LKIDYFDQENKVF----GFYYKNKHYEIKTNLKGDFQAYNMGAS-----ILLGFYMGFDI 296 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + R+ G +ID ++ + +L + R I Sbjct: 297 EEIQRGILSLSSIPGRFETIELNGVKVVIDYAHTPDALE-----KLLKTAKAITKNRLIC 351 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVH 425 V G G ++ + ++ S + + S + + + + S Sbjct: 352 VFGA---GGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDILEGIDPSKGPM 408 Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451 E +DGDVVV+ K Sbjct: 409 VEEDRKKAIALALDIALDGDVVVIAGKG 436 >gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis EAS054] gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis EAS054] gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu002] gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis EAS054] gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis SUMu002] Length = 391 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 9 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 68 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 69 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 128 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 129 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 185 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 186 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 243 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 244 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 303 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 304 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 362 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 363 VLVKASNAAGLGAVADALVAD 383 >gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599] gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 388 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 159/365 (43%), Gaps = 12/365 (3%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165 +IA+TGS GKTTTKEM+ LS TY + + N R+ + + Sbjct: 18 LDKPVIAVTGSAGKTTTKEMIYSILSLRMPTYKSMYNKNFLGNTRAHTKRIRDEHKAAVL 77 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224 E G+ G +R +++P + VIT I AH+ NF +++A AK E+ ++ TGT+F Sbjct: 78 EYGIYRSGHLRQHCKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTELIRHMKPTGTVF 137 Query: 225 LNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LN D + + + I +FGK + AD++ + K E L+G+ Sbjct: 138 LNRDCPYSREFVQQPYLGSFTGKIVTFGKEQEADYKAGRTKIEGNGFRFECSLRGEKESF 197 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N L + + + VD + LS F + R YR A N ++D Sbjct: 198 FVPIPGEHNLYNALAAIAVAHTMGIPVDDIRRGLSQFRGQRKRLTSYRLANNIQ---VLD 254 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++Y++NP + + + +S G +IAVL M EMG+ H D+ LS N+ + Sbjct: 255 DTYSSNPDAA---KAAIDVLSQVGHTTKIAVLASMLEMGKYDVKGHEDVGIYLSQKNVDY 311 Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 ++ G + A RS V + + GL + L +VK SN Sbjct: 312 LYTLGNSARYIARAAIRSGFPANRVRHCLSKAGLHRRLAKQLKPDTAFLVKGSNRLKMGE 371 Query: 460 LINLL 464 + L Sbjct: 372 TVQFL 376 >gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] Length = 493 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 152/462 (32%), Gaps = 46/462 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79 + V + +DSR + + F AI G DG +I A+++GA V+ + G Sbjct: 19 ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGL 78 Query: 80 ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 ++ + ++ + L++LA + ++I +TG+ GKTT +++ L + Sbjct: 79 VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 138 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 A +G+ N G L + L +S G ++ Sbjct: 139 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 196 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ V T ++ HL +E A AK +F + I D+ + + Sbjct: 197 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 256 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G+ S + L +S + ++ G + H + L Sbjct: 257 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 312 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++L VD S + G+ +N ++D ++ + L Sbjct: 313 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 367 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 + H G A+ G G + ++ HV L+ + Sbjct: 368 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPTMIV 423 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L R+ + + D++++ K Sbjct: 424 QDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAGKG 465 >gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] Length = 491 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 146/453 (32%), Gaps = 41/453 (9%) Query: 27 VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G + DSR + P +AF A G DG F+ A+ GA +V D V + G V Sbjct: 20 VTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFEDARV 79 Query: 86 FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + D+ +A A ++A TG+ GKT+T AL+ + + +G+ Sbjct: 80 ATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGVMGTL 139 Query: 144 NN--------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 R VD F L S +G + +A+ Sbjct: 140 GVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEIDVALF 199 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T HL + AK + +N DD L A+ AL + T Sbjct: 200 TNFTRDHLDYHGTMAAYWEAKRRL-FAWPGLKAAVINVDDEQGARLAAEPLALDVWTYAV 258 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G ++ R + + ++EV IG + N+L LG + L Sbjct: 259 NGAAR---LVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRALGVA 315 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A + P G R G + Y P +++ + L ++ G Sbjct: 316 LADAAAVVPALTPVPG-----RMQRVPGEHVEVVVDYAHTPDALEKVLQALRPLAAARGG 370 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420 R V G G + L ++ V + + + + Sbjct: 371 RLWCVFG----CGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAG 426 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V E + ++ GDVV++ K Sbjct: 427 HDEVDVIEDRHEAIAYAVANAAPGDVVLLAGKG 459 >gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814] gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814] Length = 487 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 145/480 (30%), Gaps = 55/480 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + Q V + DSR + F I G DGH ++ +KG Sbjct: 1 MKLTQLLERLEYEVVQGDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAYVQQVAEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A V+V D+ A + V V++ AL + A K +I ITG+ GKTTT Sbjct: 61 AAAVIVEKDVEA---PEGLTVIKVENTRYALALTSAAYFGYPAEKLKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L + IG+ IG + + + E Sbjct: 118 TYMVKSILEEVGIKVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEMVEEGCECVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G T + I + T + H+ E Sbjct: 178 V--SSQGLKLDRTAGIPFEIGIFTNLGEDHIGP-----NEHKDFNEYKYCKSLLFKQCKI 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283 + + + +FG S+ AD + K S + +V Sbjct: 231 GIGNVDDKWFEDIFKDATCKVETFGFSEKADIRATDVKHISRPGYLGVQYHVAGLMDFDV 290 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N L + + V+ KAL R FTL+ Sbjct: 291 EIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKALK----VARVKGRIEMIKVSDDFTLMI 346 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + Y N ++++ + L P ++ G S++ ++ EV + Sbjct: 347 D-YAHNAMALESLLDTLRDYHPER------IVTVFGCGGNRSKTRRYEMGEVSGKLSDFT 399 Query: 404 VWLSG----FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + S A+ D + ++ + GDV+++ K Sbjct: 400 IITSDNPRFEEPQAIIDDIVVGMKKTDGKYITIC-DRKEAIKYAIEHGQPGDVIILAGKG 458 >gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI18] gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID1] gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID24-1] gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] Length = 492 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 146/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ ++ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D+ EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] Length = 492 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 90/456 (19%), Positives = 151/456 (33%), Gaps = 48/456 (10%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G++ DSR + FFAIKG DGHDFI AV +GA +V + G + + Sbjct: 23 RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVEVPPG---VVLEV 79 Query: 88 VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 V + AL A K ++ +TG+ GKTTT +L+ K IG+ Sbjct: 80 VPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIGTLYV 139 Query: 146 HIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +G + ++ + E+ S G V +AV Sbjct: 140 KLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEV--SSHGLALERVTGVAFDVAVF 197 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +E+ KA +F L + + + +L Sbjct: 198 TNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCRGVEVL 257 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 K + ++ E + + G+ +EV G N L L + Sbjct: 258 TYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYNALAALAVAVGEGMP 317 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D A +ALS GR FT++ + Y P + + +IS G Sbjct: 318 LDLAARALSRVQAVPGR---CERIDEGQDFTVLVD-YAHTPDGLLNILRTAREISR---G 370 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPR 420 R I V G G + ++ V ++ + + A+ L + Sbjct: 371 RVIVVFG----CGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQGLAQ 426 Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 E + + GD+V++ K Sbjct: 427 VAPPSRYLLIEDREAAIKEAFARARPGDIVILAGKG 462 >gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS195] gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS195] gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS678] Length = 499 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 79/486 (16%), Positives = 150/486 (30%), Gaps = 53/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + + +++DSR+I + F A+ G DG FI A+ Sbjct: 1 MMLLRDLL----APWLHYAGAQSFSDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56 Query: 64 GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110 A V+V+TD G + V + ++ +A + + Sbjct: 57 SAAAVLVHTDDADQHGKVLHSDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116 Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163 I ITG+ GKT+T +++ ++S+ +K N G + D Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176 Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D L +S + A F + K + + Sbjct: 237 STLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 ++ +G N+L L + + D+ + + P GR +R+ A N Sbjct: 297 PEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +A L+ + H G V G G L Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCVGDLWCVFG----CGGDRDKGKRPLMGQA 405 Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + ++ + + L + + GDV+ Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465 Query: 448 VV--KS 451 ++ K Sbjct: 466 LLAGKG 471 >gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 514 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 79/469 (16%), Positives = 141/469 (30%), Gaps = 54/469 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 ++ + S+ + + F AIKG DGHDFI AV GA +V Sbjct: 24 ESVEISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIVE-----DFVEED 78 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I V + AL K+A K + IT S GKT+T M Sbjct: 79 ILQIKVKNSRIALAKVASIFFGEPSKKLKVTGITASNGKTSTAFMTKCIYDKAGYNTGIS 138 Query: 141 GSYNNHI---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 G+ + M + S GE+ + Sbjct: 139 GTVYTKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSSAGELARA-YATDFD 197 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----- 240 I I P H+ N E K+ + + LN D L+ + Sbjct: 198 IVTFNNITPEHIVNHGSFERYYHVKSRLIRHAKDDCVAILNSDFELINDLRNNTKAQVVT 257 Query: 241 ---ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ I + F K+ + + ++ +S +V GY N + Sbjct: 258 YSLKNNLEDISIDNLDLSTGFGKFKFIVNRDIKLKGITIKKQSFDVELKVAGYSSVMNAI 317 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + I + D+DT + + F E R + + I + + AN +++ + Sbjct: 318 VAITIGLVNGIDLDTILAGIQDFTGVERRFEVIFDEGFK-----IVDDHFANKNNIEVTL 372 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA----------EVLSLYNISHVWLS 407 LS++ A+ G G + ++ E + + V Sbjct: 373 DTLSKMDYKNLDILYAIRGS---RGADLNEENAEVIASWYERLKPREFIVTLSKDTVTWK 429 Query: 408 GFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +A R +I + + + D D+V+ Sbjct: 430 DEVTDDELEAFKRVMSKHNIKFVLEDNLKEAVEKVIDGTKDDDLVLFAG 478 >gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister micraerophilus DSM 19965] gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister micraerophilus DSM 19965] Length = 498 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 73/486 (15%), Positives = 153/486 (31%), Gaps = 52/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +LL I + I+ DSR + F + G H DGH ++ AV+K Sbjct: 1 MKNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA ++ + + V V + + K+A +IA+TG+ GKTT Sbjct: 61 GAVAIIAEKKISV---PEGVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGM 169 T +++ L IG+ + IG + + + M Sbjct: 118 TTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKAKVTHVCM 177 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TG 221 S + AV + + HL + A+AKA++F + + Sbjct: 178 EVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKSNK 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + ++ + +++ +++A+ ++ + + + + K Sbjct: 238 NACINIDDDYSHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKNKEY 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G N++ + D + IKAL+ F GR + Sbjct: 298 PVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPGRFELIDEGQEFSVVVD 357 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + ++L+ G+ I V G G + ++ Sbjct: 358 YAHTPDG-------LENILTTAREITTGKIIVVFG----CGGDRDPMKRPIMGRIAAKYS 406 Query: 402 SHVWLSGFHV-------------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 ++ + +K+ + + D+V Sbjct: 407 DIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIV 466 Query: 448 VV--KS 451 ++ K Sbjct: 467 IIAGKG 472 >gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] Length = 478 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 71/470 (15%), Positives = 150/470 (31%), Gaps = 50/470 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 ++L I + G +G+ DSR + + F A++G +DGH FI AV+ GA V Sbjct: 3 EILNGIDYKILKKFETGPFSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAV 62 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 + + ++ + I V ++ L +A + + + + T + Sbjct: 63 IGSKEIEVNH---DITYIVVKNLRQKLGVIASNFYKWPQKKLEIVGITGTNGKTTTTYLL 119 Query: 129 ALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHL 172 + + IG+ +G + + + + I E+ SH Sbjct: 120 EQILGEDKVSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIMEV-SSHA 178 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 E+ + + + T + P HL +EE SAK ++F + N DD + Sbjct: 179 LEMGRVEMI-DFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENTVFNTDDFYG 237 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 + L + + ++ D + +E+ + ++ G Sbjct: 238 KRLFDEFGGISYGI-------ESGDLNASMISHSLKTQEIELSFKEFQKKINIKLQGKFN 290 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L +G+ L ++ L GR + N Y + Sbjct: 291 VYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFECIEAGQNFMVVVD----YAHTADA 346 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++ +S L++I ++ G+ S +AE + V ++ + Sbjct: 347 LENILSALNEIKIEK------IITVFGCGGDRDLSKRKPMAETAEKLS-DIVIVTSDNPR 399 Query: 413 ---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + D+V++ K Sbjct: 400 TEDPVKILDEVSKGLSSLKDSLLEIDREKAIEKAVGMAKKNDIVLIAGKG 449 >gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] Length = 496 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 86/480 (17%), Positives = 137/480 (28%), Gaps = 45/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L + G I + I DSR A F I G H D H FI +A + Sbjct: 2 MKRLEELADLVPGARIAGDKCTEITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARA 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+ D VA I V V D+ AL+ + +I ITG+ GKTT Sbjct: 62 GARAVLTERDKVAVPP--GISVLHVPDLQEALDLIVPYFYDYPARAMRVIGITGTNGKTT 119 Query: 122 TKEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--- 169 T ++ L + ++ P + + + + Sbjct: 120 TSYLVRAMLRHAGRRVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVM 179 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + + AV T + HL +E A AKA +F+ + + G Sbjct: 180 EVSSHALDQGRVAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKT 239 Query: 228 DDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVH 285 + AK ++G A RK + + + V Sbjct: 240 AILNADDAAAKMMRAHTHCPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPAVQT 299 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N+L G AL+ F GR + R + + Sbjct: 300 GITGLFNVYNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELVRAGQDFSVIVDYAHT 359 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + +VL GR I V G G + ++ + Sbjct: 360 PDG-------MENVLRTARAVTTGRIITVFG----CGGDRDRTKRPIMGRIAAELGDVIV 408 Query: 406 LSG-----FHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ A+ D + + GD VV+ K Sbjct: 409 LTSDNPRTEDPAAILDEVEAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKG 468 >gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] Length = 493 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 68/479 (14%), Positives = 138/479 (28%), Gaps = 46/479 (9%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L T L + + ++ + +DSR I F AIKG DG FI A+ Sbjct: 5 IALSTL--LAPWVDISAH-EFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAI 61 Query: 62 QKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 +GA V+ +PV +D + L+ LA ++ +TG+ Sbjct: 62 NRGANAVIAQSCERHPQGVCSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTN 121 Query: 118 GKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG- 163 GKTT +++ L+ + + + + ++ Sbjct: 122 GKTTITQIIAQWLNLVGKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGAD 181 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S G ++ + V T ++ HL +EE + G Sbjct: 182 FTAMEISSHGLVQGRVKTLPFAAGVFTNLSRDHLDYHGTMEEY-ELAKRSLFTEHQCGKA 240 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 +N DD + ++ + + + + + Sbjct: 241 IINVDDQVGAKWAEQLPDAIQVSLQPLSSTNAVFASQVDYS--ESGISLAFSGRFGDGQF 298 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A N+L+ + L D I+ P GR + + Sbjct: 299 SVPLIGEFNANNVLVAFTTLLALGIDKQQLIETAKQLTPVIGRMELFHNEGKAKVVVDYA 358 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A L + H G+ A+ G G + + + H Sbjct: 359 HTPDA-------LEKALMALRVHCHGKLWAIFG----CGGDRDTGKRPMMAEIGERLADH 407 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + + + ++ D++++ K Sbjct: 408 VVLADDNPRSESPSAIVDDMLAGMRNPERAIVEHDRFKALQYALANSEVHDIILLAGKG 466 >gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] Length = 495 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%) Query: 11 LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L A+ G V G+++DSR + P F A+ G G F+ A+ GA ++ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 70 VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + A + +D L A R AT++A+TG+ GKT+ Sbjct: 68 TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172 +++ IG+ P+TL R+ + + S Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + V A T HL E +AKA +F + + D Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A + + G +AD +L + + + QG+ IG Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+ + + + S GR + N +D ++ + + Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGA-SVFVDYAHTPDALA 366 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 L + PH GR + V G G L + + ++++ Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417 Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + H L +L GD +++ K Sbjct: 418 TEDPAAIRRAILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464 >gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 495 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 139/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL P+ + +++DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VV D VA S +PV + ++ L+KLA + A + + + Sbjct: 61 AAVVAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G I+ + AV T ++ HL + +AK +F + I Sbjct: 181 AMEVSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + N + + + + ++ Sbjct: 241 ADDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + A S P GR + + Sbjct: 301 SRLMGAFNVSNLLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVFNAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L+ H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALAAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + H DVV++ K Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 467 >gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] Length = 484 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 80/469 (17%), Positives = 144/469 (30%), Gaps = 53/469 (11%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 + I+G + +P ++GI+ D+R + F IKG +DGHD + KG +VV Sbjct: 11 ELIKGVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGCAVVVC 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128 D+ V D A L A + +I +TG+ GKTT ++ Sbjct: 71 ERDLGLE------RQIVVSDTRAAFPMLCAAWFGHPERELELIGVTGTNGKTTITTVIKK 124 Query: 129 ALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGE 174 LS IG+ N IG L R D + +S G Sbjct: 125 VLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAGCKYTVMEVSSQGL 184 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + V T + HL +E AK +F+ + + + + Sbjct: 185 EQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLFDISD-------SAIINIDDE 237 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + S+ + +ADF + + V + G Sbjct: 238 YGRRYAKEIPCPYKSYSVNGSADFMAQDVMLGTAGVKYVFDDGRVKKNVSFNMPGLFNVS 297 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + +L I+ GR FT+I + + A Sbjct: 298 NSLAVIACMEVLGYTPCQTIREFEKIQGVRGR---AEIVPTGRDFTVICDYAHTPDA--- 351 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 I+VLS I +G+ + G G + + + ++ + Sbjct: 352 -LINVLSAIKEGAKGKVKCLFG----CGGNRDRTKRAPMAAAAAEHADFLIVTSDNPRNE 406 Query: 413 -------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + + + D++V+ K Sbjct: 407 DPDEIINDVMEGLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKG 455 >gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] Length = 508 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 143/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ + D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 265 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 130/242 (53%), Gaps = 3/242 (1%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 DL + + + +N ++I+S+ + + FFAIKG + DGH F+ ++K + ++ Sbjct: 7 DLQKIFNKEILNK--KININNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVI 64 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128 VV + + V + +L A RL S+ + ITGS GKTT K ML+ Sbjct: 65 VV-KNNFKVPKNNLHKFIKVRSPIRSLENFAKYQRLTSQGKFVGITGSFGKTTLKYMLSF 123 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 L KT++ S+NNH G+PL+L+ P + F IFELGMS EI L+ ++RP I V Sbjct: 124 FLEQYGKTFSSPKSFNNHFGLPLSLSNTPKNSQFNIFELGMSSSREIDKLSQILRPDIGV 183 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I PAHL NF ++ + AKAEI +++ G I LN DD +F L ++ +K I Sbjct: 184 ITNIGPAHLKNFKNLKAVCLAKAEIMNHIQENGYIVLNKDDFYFNTLFKIANNKKLKIIT 243 Query: 249 SF 250 Sbjct: 244 FS 245 >gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus curdlanolyticus YK9] gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus curdlanolyticus YK9] Length = 495 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 155/482 (32%), Gaps = 51/482 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +++ I + + G++ DSRS+ P FF + G DGHDF A G Sbjct: 1 MTLNEIANWILAAKLEGDGNVQITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +VV + ++IP V D A+ ++ K +I +TG+ GKTTT Sbjct: 61 AAALVVERKL-----DVAIPQLIVKDSRLAMAIISDRYYDHPSQKLRLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---GVPL-----------TLARMPVDVDFGIFELG 168 ++ LS ++ IG+ +P+ + + Sbjct: 116 TYLIERILSDAGQSAGVIGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCAME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IF 224 +S + T R I V T + HL +E+ A+AK+ +F L T + Sbjct: 176 VSSHALDQGRTWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEAER 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + I ++G + AD + + S + ++ ++ Sbjct: 236 SYAVLNADDSASDLFANAAAVEILTYGIDREADVRASDIRITSRGTTFRLETFRGGADIS 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + + ++ ++L GR + Sbjct: 296 IRMVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQPYAVIVDYAH 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + +VL + EGR I V G G + ++ Sbjct: 356 TPDG-------LENVLRTVKEFVEGRIICVFG----CGGDRDRTKRPIMGRIAAKYADIC 404 Query: 405 WLSGFHVL---------ALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 ++ + +++ L S E GDVV++ Sbjct: 405 VITSDNPRSENPHAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 488 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 82/462 (17%), Positives = 153/462 (33%), Gaps = 43/462 (9%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + ++ + +DSR FF +KG DGH F AV+ GA VV + D+ Sbjct: 5 KLVNTELDCDIDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDV 64 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 G I VDDV+ L+++ + ITG+ GK+TT + L Sbjct: 65 IEG---IVYIRVDDVMTELHRVTDVFYNSPSTNMYVYGITGTNGKSTTMLTVRNILRRFG 121 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD------------FGIFELG--MSHLGEIRFLTH 180 IG+ + + G+ E+ +S G Sbjct: 122 VNAGYIGTISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVE 181 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + A T + HL +E AK +F+ L+ +G + LN D+ + E+L+ + + Sbjct: 182 SIDFDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPSGFMVLNIDNEYGEILQNQDY 241 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + A ++ + + + + +GK+ VV + + NML + Sbjct: 242 SNVVTYGV---DNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNVI 298 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 I+ ++ I L +GR + P SMK + Sbjct: 299 AILHQRGYALEKIIPELKDIEHVDGRQTMVNKGQPFRVIVD----FGHAPDSMKNVYEFV 354 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 G V G G + + ++ HV ++ Sbjct: 355 RSTQDEGARLIT-VFGAAG--GRDTAK--RPIMGRVASMYCDHVIITEHDNRDERVVDIT 409 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451 + + + + + + GD VV++ K Sbjct: 410 QDIITGIESN-NYEFVPNRTDAIEKALKMALPGDTVVLIGKG 450 >gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] Length = 508 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 144/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTNSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] Length = 489 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 81/454 (17%), Positives = 149/454 (32%), Gaps = 36/454 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79 V G+++DSR + P F A+ G G +FI +A+++GAG ++ + + Sbjct: 15 DPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAAELV 74 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---- 135 + +D AL A T++A+TG+ GKT+ ++ Sbjct: 75 GADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHKAIS 134 Query: 136 ------TYACIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHI 186 + P+TL R+ + + S G + VR Sbjct: 135 LGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDGVRLKA 194 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T + HL +E +AKA +F+ + + G + D A+ Sbjct: 195 GAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGERGLK 254 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + GK + AD ++ + + + G++ V IG A+N+L G+ Sbjct: 255 LTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGLAIAA 314 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + I+ L GR G +D S+ + L + PH Sbjct: 315 GDEAPRVIETLPGLTTVRGR-MELAAVRENGAAVFVDYSHKPGALAS-----ALQSLRPH 368 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA--LP 419 GR + V G G L + V+++ A++ Sbjct: 369 VMGRIVVVFGA----GGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVMAG 424 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L +L GD +++ K Sbjct: 425 AGPDAIEVGDRAEAILRGVDALQPGDALLIAGKG 458 >gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae MS11] gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] Length = 492 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ ++ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL+ +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] Length = 483 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 153/475 (32%), Gaps = 53/475 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L +F D++ I + I+ DSR AF AIKG DGH +I A++K Sbjct: 7 LISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKK 66 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121 GA L++ D+ I V+D AL +++ ++A+TGS GKTT Sbjct: 67 GASLIIHTEDV---TCEEGISYIRVNDPRKALAQISNLIYDFPSKKMELVAVTGSNGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIF-----EL 167 T ++ + I A IG+ N H+G P + L Sbjct: 124 TSRLIAFLMGEIFGDSASIGTNNAHVGDDIIPTSNTTPDITEVNRILAKCLEKNIHHLAL 183 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + + + + T ++ HL ++ AK +FE + T + Sbjct: 184 EASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAKMILFENAKNTLANIDDP 243 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + L K +F + + + + ++ + + +E V + Sbjct: 244 YGKRAKELFPK--------TITFAIDEESADYRAEDIVKKDG---KISFKIRGVEFVLNK 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I + N L + ++ + A ++ +A F + R + L + Sbjct: 293 IANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFEYIENDLGINIILDFAHT-- 350 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 S IAV G G+ + F + Y + V + Sbjct: 351 -------PRAYEALFESVPKGSNIIAVFGI---NGDRNSEFRRLIGNACGKYKVFSVLTT 400 Query: 408 GFHVLALKDALPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 D + I V + + GD V + K Sbjct: 401 DDPKFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKG 455 >gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila abortus S26/3] gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila abortus S26/3] Length = 483 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 82/472 (17%), Positives = 152/472 (32%), Gaps = 42/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + G + V ++ DSR++ + F A +G H DG+DF AV+ G Sbjct: 1 MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFSHLAVENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A V + L + D+ LA ++ ITG+ GKTT Sbjct: 61 AIAVASS----IYNPFLPVVQIISSDLPRLEADLAAKYYGHPSQKLCVVGITGTNGKTTV 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + K IG+ + +G + + + Sbjct: 117 SHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKMVKSHLSAAVME 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +G V + V+T + HL S EE AK ++F L +G +N D Sbjct: 177 VSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSMLPSSGLAVVNND 236 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + A I ++G ++AD+Q + + ++ +G++ I Sbjct: 237 LCDAAQFIEATQAQPI----TYGIEQHADYQASHVRFSPFGTDFDLLYKGETFACYSPLI 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N+L + + + ++ + + Y Sbjct: 293 GQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLEPIFSGPCPIYID----YAH 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ L + P +GR I V G G + + V + Sbjct: 349 TPDALDNVCQTLQALLPQ-DGRLIVVFG----CGGDRDQSKRKIMAQVVEKYGFAVVTTD 403 Query: 408 ---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 G + + + + S D D+V+V K Sbjct: 404 NPRGEDPEKIINEICSGFLKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455 >gi|299536847|ref|ZP_07050154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298727671|gb|EFI68239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 730 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 83/379 (21%), Positives = 163/379 (43%), Gaps = 15/379 (3%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 + + + IIAITGS GKTTTK + LS + +N Sbjct: 360 QQKSKQVEAKKTLPIIAITGSAGKTTTKAFIGSILSKKWNVFESKDYWNTTEHTKKHKEE 419 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214 + + E GM++ G I +++P+I+++T I AH+ NF + +A AK+E+ Sbjct: 420 INDSHQAVVLEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELI 479 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 G+++ G + +N DD L+ + I + G K AD++ + ++ Sbjct: 480 HGMDQQGLLIVNQDDDNSRYLETQQFKGKI---ITVGIKKEADYRAYDLQYKDVGMSFKM 536 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +L G+ +E+ +G H N L + + +L L+ P Sbjct: 537 KLHGQEIELYIPILGEHHVYNALNAVAVADLLGFSPLDIQSGLNFKKPPRRLTIYN---- 592 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + T+ID++ +++P ++AA+ VL+ I+ + + +A++G M E+G L + + + E Sbjct: 593 CRDDITVIDDTVHSHPQGVRAALDVLTNIATNRK---VAIIGQMRELGVLREEEYRKVGE 649 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + I GF + +A VH+ D L + ++ + D ++VK Sbjct: 650 YVYDIGIDEFITYGFRTDEMSNAAIAKGMDPSRVHHFINKDQLHVLLEKLIKPHDTILVK 709 Query: 451 SSNSCGFYRLINLLLEEFP 469 ++ + + L + F Sbjct: 710 GASKTNMFETVKFLDQTFK 728 >gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 77/451 (17%), Positives = 142/451 (31%), Gaps = 39/451 (8%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + G++ DSR +A + FFA+ G DG + AV++GA VV AS+ + + Sbjct: 21 EIAGLACDSRLVAKDQVFFAVPGTKADGLTYAPEAVRRGALAVVTEQ--SASVPFETAAL 78 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--------- 136 V DV AL + R T++A+TG+ GKT+ +S+ Sbjct: 79 VKVADVRSALAIASARFYARQPETVVAVTGTSGKTSVAAFARQIWASLGFKAASVGTLGV 138 Query: 137 --YACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITT 191 P++L R + G+ L S G + VR A T Sbjct: 139 VAPDGASYGGLTTPDPISLHRTLDELAGAGVTHLALEASSHGLDQHRLDYVRLKAAGFTN 198 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 ++ HL +E AK +F + + DS ++S G Sbjct: 199 LSRDHLDYHPTLEAYFQAKLLLFTHVLPADGTVVVDADSSAGHEVIDVAKARGLKVFSLG 258 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 L + + + + + + GK + + L + + Sbjct: 259 -FAGETLHLLEARPEAAATLLRLTFAGKDWALRL---PLVGSFQAANALMAAGLCISTGA 314 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + EG R + ++ + + A L + P + R Sbjct: 315 APDAVFAALERLEGAPGRLEKVGERRGASIFVDYAHKPDA----LEKALQALRPFTQKRL 370 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPRSI 422 I + G G + L ++ HV ++ + A+ Sbjct: 371 IVIFG----CGGDRDAGKRPLMGEIAARLADHVIVTDDNPRSEDPDLIRKAILQGAGSGP 426 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 H+ + L GD++++ K Sbjct: 427 HIREIGDREAAIKSGIGMLEPGDLLLIAGKG 457 >gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens] Length = 606 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 84/497 (16%), Positives = 152/497 (30%), Gaps = 63/497 (12%) Query: 5 WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T LL + S + GI DSR +AP + F +KG DGH F + A++ Sbjct: 95 MTLRKLLNEARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIE 154 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKT 120 KGA ++ ++ + G + V+D L+ LA ++ ITG+ GKT Sbjct: 155 KGAVAIISLMEVSLTEGLKAA--VIVEDTSVILSALAGVIYGHPSKKLSVVGITGTNGKT 212 Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165 TT +L ++ + P L V + Sbjct: 213 TTSYLLQSLYEAMGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNGTEVC 272 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G + + +AV T + H+ EE AK +F + Sbjct: 273 IMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQRK 332 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + S + +FG + D K +S + V+ +E+ Sbjct: 333 VVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGDVEIS 392 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G H N+L + + + A ++ ++ + GR + Sbjct: 393 SRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELIDEGQTFAVLVDYAH 452 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A +L + G R I VLG G + ++ Sbjct: 453 TPDA-------VARLLDTVRECGPKRIITVLG----CGGDRDKGKRPIMAKIAADKSDVC 501 Query: 405 WL--------------------SGFHVLALKD--------ALPRSIHVHYSETMDGLFLF 436 + G+ + LP + E Sbjct: 502 IITSDNPRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRA 561 Query: 437 IQSSLVDGDVVVV--KS 451 + +GD VV+ K Sbjct: 562 AVAMAEEGDAVVIAGKG 578 >gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus YJ016] gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016] Length = 515 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 151/462 (32%), Gaps = 46/462 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79 + V + +DSR + + F AI G DG +I A+++GA V+ + G Sbjct: 41 ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGL 100 Query: 80 ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 ++ + ++ + L++LA + ++I +TG+ GKTT +++ L + Sbjct: 101 VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 160 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 A +G+ N G L + L +S G ++ Sbjct: 161 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 218 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ V T ++ HL +E A AK +F + I D+ + + Sbjct: 219 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 278 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +G+ S + L +S + ++ G + H + L Sbjct: 279 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 334 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + ++L VD S + G+ +N ++D ++ + L Sbjct: 335 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 389 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 + H G A+ G G + ++ HV L+ + Sbjct: 390 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPAMIV 445 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L R + + D++++ K Sbjct: 446 QDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 487 >gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] Length = 293 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 105/286 (36%), Gaps = 23/286 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI ++ ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ + +AV ++ HL ++E A+AK+ +F L + Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + + +FG + ADF+ + S S Sbjct: 236 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTF 281 >gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus fermentans DSM 20731] gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus fermentans DSM 20731] Length = 497 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 159/479 (33%), Gaps = 49/479 (10%) Query: 6 TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+++ + G + G V+ ++IDSR+ P F IKG + DGH ++ A +G Sbjct: 4 NLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAAQG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + + V V A+ LA K +I +TG+ GKTTT Sbjct: 64 AVAALTEQETEV---PDGMTVIRVPSTQEAVKTLAPWFYDWPARKMRMIGVTGTNGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFE 166 +L L+ IG+ N IG + + D + E Sbjct: 121 TNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHCDTCVME 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH + + + AV+T I HL +E AKA +F L + Sbjct: 181 V-SSHALALDRVAGI-EYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTKPNKT 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + A I ++GK K+ D + + + +Q M++ H Sbjct: 239 AVFNSDDPSSAIIMPRVKTKIMTYGKGKDNDVYPLTFHVAASHMELNLQTPVGEMDLKLH 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N++ ++ + I+ L F GR + + Sbjct: 299 ITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHAGQPFTVVVDYAHTP 358 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL +G+ V G G + ++L + Sbjct: 359 DG-------LENVLKTARQITKGKLWVVFGA----GGDRDRKKRPIMGKIALDLADIAVV 407 Query: 407 SGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +++ L P +H ++ + DVV++ K Sbjct: 408 TSDNPRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKG 466 >gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis T92] gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis T92] gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium tuberculosis T92] Length = 391 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 TII ITGS GKT+TK+++ L+ + + A GS+NN +G P T+ R D+ I E Sbjct: 9 GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 68 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA KAE+ + + +G + LN Sbjct: 69 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 128 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + A ++ A + Q EV Sbjct: 129 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 185 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G H N L + A V+ AL+ P R + T+ID++Y Sbjct: 186 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 243 Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 NANP SM+A + L+ I+ P R AVLG+M E+GE + + H + + ++S + Sbjct: 244 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 303 Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + G A D V+ D +++ L GDV Sbjct: 304 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 362 Query: 447 VVVKSSNSCGFYRLINLLLEE 467 V+VK+SN+ G + + L+ + Sbjct: 363 VLVKASNAAGLGAVADALVAD 383 >gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 144/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/475 (15%), Positives = 143/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + IK +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ + D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU121] Length = 494 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 152/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ + V I+ DSR+ F A KG D H F + V +G Sbjct: 1 MNASVLFEKIRVKQVIGTLDKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 ++VVN + + + V D L + LA ++ +TG+ GKT+ Sbjct: 61 CSIIVVNREQD---LNGDVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + E + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G +A F+ ++ + E S +V + Sbjct: 238 LNNDDDFSEYLASVTPYEVFTYGIDNDAQFRAINVEESLQGVKFEFDTPFGSYQVESPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V A + I+A+ P L +L + Sbjct: 298 GKFNISNIMAAMIAVWSKGATFEEIIEAVKSLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ V +V + Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y E GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHSNYVEFEDRAEGIKHAIDVAEPGDTVVL-ASKG 458 >gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/475 (15%), Positives = 144/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + IK +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDII 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] Length = 509 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 95/491 (19%), Positives = 163/491 (33%), Gaps = 62/491 (12%) Query: 5 WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++L+ I+ I ++ +S +S +I F AIKG DGH +I +A Sbjct: 1 MKLREILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKN 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT 120 GA + VV + IP VD+ +L LA +I IT + GKT Sbjct: 61 HGAIVAVVE-----DFKEVYIPQIKVDNTRKSLADLAKNFYKDPSKDLKVIGITATNGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI---------GVP-------LTLARMPVDVDFGI 164 TT ML LS K IG+ P + ++ + Sbjct: 116 TTSFMLKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEMLDKNISHVV 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ S +R I ++ H+ E K++I +K Sbjct: 176 MEVSSSAQQMLRVNNI--DFDIVSFGNLSREHIDQHGSFENYFRDKSKIILNAKKGSFAL 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQG 278 LN D+ + LK K+ A + S + K+ + E+ L+ Sbjct: 234 LNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRDIKEINLKK 293 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 +S EV +GY N ++ + + IL D + + AL F E R L Sbjct: 294 QSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVER-----RFELIYDE 348 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---- 394 + + + AN ++ ++ LSQ++ A+ G + + E Sbjct: 349 KFKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAI------RGNRGVELNRAVDERLCF 402 Query: 395 VLSLYNISHVWL-------------SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSS 440 L S ++ + + L +I Y + I Sbjct: 403 WLKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKK 462 Query: 441 LVDGDVVVVKS 451 GD+V++ Sbjct: 463 AQSGDIVLLAG 473 >gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/475 (15%), Positives = 143/475 (30%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VV + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + IK +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ + D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] Length = 509 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 92/435 (21%), Positives = 145/435 (33%), Gaps = 38/435 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T LL + + P V ++ DSR + P F AI+G H DGH FI A Sbjct: 1 MTA-KTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 + +GA VVV+ V D AL LA A T I ITG+ G Sbjct: 60 IARGAVAVVVDQRYWDERPVAVPVVVV-ADSRVALAPLAAAFYDYPGRELTTIGITGTKG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPV---------------DV 160 K+TT ++ L++ + I + + IG P + Sbjct: 119 KSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGC 178 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGL 217 D + E L +AV+ I HL E+ + KA++F Sbjct: 179 DTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGER 238 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + +N DD A +G + AD Q + S + V Sbjct: 239 SGSRWAIVNADDPNHAYFLDA--APADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSP 296 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + ++ G A N L L + ++ A AL+ GR Q Sbjct: 297 WGTTDLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRMVPID--AGQP 354 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F ++D ++N + + + + P +GR IAV G E + ++ Sbjct: 355 FAVIVDYAHNPDSFE-----QIFAMLRPQVQGRMIAVFGSAGE----RDVAKRAIQGEIA 405 Query: 398 LYNISHVWLSGFHVL 412 + L+ Sbjct: 406 GRMCDLLVLTDEDPR 420 >gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 494 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/449 (13%), Positives = 132/449 (29%), Gaps = 41/449 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82 V + +DSR + F AI G + DG +I A++ GA V+ + + G + Sbjct: 27 VKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANAVIAQACPLNTHGKTEVRDN 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY----- 137 +P+ VDD+ L+ LA +IA+TG+ GKTT +++ + Sbjct: 87 VPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQWFELVSCHAAVLGT 146 Query: 138 ---------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + L +S G + + + + Sbjct: 147 TGNGFIDDLKPATNTTGNAIEVQQTLHALEQQGAKYTALEVSSHGLSQGRVKALEFEVGI 206 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 + ++ HL +E +N DD + + +++ Sbjct: 207 FSNLSRDHLDYHGTMENY-EQAKFSLFNQHCCKQAIINIDDPVGKRWLGYLDSAVAVSLH 265 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ + + + E+ IG A N+L+ + + + Sbjct: 266 PQDFPRSVWAKCVNYSV--NGISLAFDGMFGDGEIEVALIGGFNANNVLIAMTTLLCMGV 323 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 D I + P GR + + + + +A L + H Sbjct: 324 DKKQLIATAPLLRPVIGRMELFTASKQAKVIVDYAHTPDA-------LEKALHALKDHSG 376 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALP 419 G + G G + +S V ++ + ++ + Sbjct: 377 GALWVIFG----CGGDRDVGKRPMMGRISEELADRVIITDDNPRSEDPTLIVKDIQAGMS 432 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 R V + D+++ Sbjct: 433 RPESVMVEHDRRAALKYAIEHSRPEDIIL 461 >gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 490 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 73/464 (15%), Positives = 141/464 (30%), Gaps = 45/464 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP+ + +++DSR A + F AI G DG +I A+ +G VV D VA S Sbjct: 11 DVPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDAS 70 Query: 81 ----LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133 +PV + ++ L+KLA + ++ +TG+ GKTTT ++L + Sbjct: 71 MVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLG 130 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180 + + N +G + + +S G I+ Sbjct: 131 ETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVA 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + AV T ++ HL + A + ++ +N DD + Sbjct: 191 ALPFAAAVFTNLSRDHLDYHGNM-ASYEAAKWLLFSTHQSEHKIINADDEVGRRWLEQLP 249 Query: 241 ALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 ++ + + + + ++ +G N+L+ Sbjct: 250 QAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLV 309 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + L + + A P GR + + + +A Sbjct: 310 ALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNALGKPTVVVDYAHTPDA-------LEK 362 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 L+ H +G+ V G G L ++ V ++ + Sbjct: 363 ALAAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQA 418 Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + H DVV++ K Sbjct: 419 IIADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 462 >gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato Max13] gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato K40] gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] Length = 487 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKG 455 >gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] Length = 523 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 84/479 (17%), Positives = 153/479 (31%), Gaps = 47/479 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL + S+G +N +S+DSR + P FFA +G GHD+I AV KGA Sbjct: 26 LSDLLAGL--VSVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGAV 83 Query: 67 LVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 V + + A + + +P+ + D+ L +A R + ++ +TG+ G Sbjct: 84 AVAYDPIIPLSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNG 143 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--------- 169 KT+ L AL + IG+ + L +++ + E Sbjct: 144 KTSVSHFLAQALHQQEAPCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRY 203 Query: 170 ------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 SH E + ++ + A+ T ++ HL + +AK +F + Sbjct: 204 AVMEVTSHALEQGRVNGVI-FNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQPGLRHAV 262 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D + L H T+ S+G + + ++ + + +QG E Sbjct: 263 INVDDTAGEAFLA---HLPAEVTVISYGLTNPQASLRVN-ELHCDRRGIVMNIQGPWGEG 318 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 N L + L +AL + R L+ Sbjct: 319 ELICPLLGRF-NAYNLLAALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPLLV 377 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P +++ A+ L R V G G L ++ Sbjct: 378 VDYAHTPDALEQALCSLRA-HLEPGARLWCVFG----CGGNRDRGKRPLMGAVAERWADF 432 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + + V+ D+V++ K Sbjct: 433 VMLTDDNPRDEDPRQIIIEILSGMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKG 491 >gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp. tularensis FSC033] Length = 484 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 57/477 (11%), Positives = 137/477 (28%), Gaps = 48/477 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + + +L+ + ++ + + +DSR + F A+KG DG+ +I + Sbjct: 4 IKMKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120 KG LV+ ++ VF + ++ L+ LA K II ITG+ GKT Sbjct: 63 AKGVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 121 TTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 + + L + ++ + + + E Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + +A+ + ++ HL ++ AKA++ Sbjct: 179 V--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKK 231 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + + + K K + Sbjct: 232 AIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYT 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 M + L S+ I L P +GR + + + Sbjct: 292 TKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTP 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A L ++ + + G G + + ++ S + + Sbjct: 352 DA-------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVI 400 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + ++ + + + F + GD++++ +S Sbjct: 401 TEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 456 >gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] Length = 492 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL T+Y +G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGVELAGRLKKDCPDLTVYGYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q +G AQN+ + ++ +D + Sbjct: 269 ADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVERAASSDIILIAGKG 464 >gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale M104/1] Length = 490 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 84/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + ++ + DSR + F I G D HDFI V+KG Sbjct: 1 MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VVV D+ G + VDD AL ++ A K I ITG+ GKTTT Sbjct: 61 AAAVVVEKDVTPIEG---VTYIKVDDTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L S IG+ + G R+ + E + Sbjct: 118 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + I V T + P H+ + A+ Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKD-----FADYMHCKSLLFRQCRLGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++G + + E + V+ + + Sbjct: 233 FNGDDEHLEGIMKGHTCQVETYGYKSTNNLVAENVELKKEHGALGVKYHVSGLLDFDVEV 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L ++I H +G+ + + + +ID ++NA Sbjct: 293 NVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSVKGRIEIVPVTKRYTLMIDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A S+L+ + + GR + + G G ++S ++ EV S V S Sbjct: 353 -----MALESLLTTLKEYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSRLADLTVVTSD 404 Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + + DGD++V+ K Sbjct: 405 NPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 458 >gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM 17629] Length = 490 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + ++ + DSR + F I G D HDFI V+KG Sbjct: 1 MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VVV D+ G + VDD AL ++ A K I ITG+ GKTTT Sbjct: 61 AAAVVVEKDVTPIEG---VTYIKVDDTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L S IG+ + G R+ + E + Sbjct: 118 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + I V T + P H+ + A+ Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKD-----FADYMHCKSLLFRQCRLGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++G + + E + ++ + + Sbjct: 233 FNGDDEHLEGVMKGHTCQVETYGYKSTNNLVAENVELKKEHGALGIKYHVSGLLDFDVEV 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L ++I H +G+ + + + +ID ++NA Sbjct: 293 NVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSVKGRIEIVPVTKRYTLMIDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A S+L+ + + GR + + G G ++S ++ EV S V S Sbjct: 353 -----MALESLLTTLKEYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSRLADLTVVTSD 404 Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + + DGD++V+ K Sbjct: 405 NPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 458 >gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] Length = 500 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 82/487 (16%), Positives = 153/487 (31%), Gaps = 54/487 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL N +++DSR+I + F A+ G DG FI A+ Sbjct: 1 MMLLRDLL----APWFIYSGDQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDL 56 Query: 64 GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNK----LAVAARLRSKAT 109 GA V+V+TD G + I F ++ + A+ LA + Sbjct: 57 GAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLG 116 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFG----- 163 II ITG+ GKT+T +++ ++S+++ N G + D Sbjct: 117 IIGITGTNGKTSTSQLIAQLVTSLRRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 176 Query: 164 --------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 EFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR 236 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + D L +S + A F + + + + Sbjct: 237 FSTLGHGLLNLDDPVGASWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDDQGVSTTLV 296 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 ++ +G N+L L + + D++ + + P GR +R+ A N Sbjct: 297 WPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERFTTADN 356 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +A L+ + H G V G G L Sbjct: 357 ITLVVDYAHTPDA-------IEQALTALRRHCAGDLWCVFG----CGGDRDKGKRPLMGR 405 Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + + ++ + + L + GD+ Sbjct: 406 AAEQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDL 465 Query: 447 VVV--KS 451 +++ K Sbjct: 466 ILLAGKG 472 >gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 486 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 82/460 (17%), Positives = 147/460 (31%), Gaps = 38/460 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ G ++G+S DSR +AP F A+ G DG FI+ A +GA + + + Sbjct: 14 LEAQLEGPAGLLDISGLSSDSRKVAPGNVFVAVAGTKADGAGFIVDAAGRGAAVAIASQA 73 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + A SIPVF V + L+ A + T++A+TG+ GKT+ + Sbjct: 74 IDA-----SIPVFAVKEPRRFLSIAAARFHGKQPDTMVAVTGTAGKTSVASFTRQIWAYA 128 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLT 179 T A IG+ + + + S G + Sbjct: 129 GHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAGEGVTHAAMEASSHGLDQCRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 VR A T + H+ +E +AK +F+ L G+ + + D + K+ Sbjct: 189 DGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLPKGSPAVIFADDPWSAQAIKA 248 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I + G+ + R +Q + + Sbjct: 249 ATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDI----PLAGDFQVANA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + A A++ G R + L Y P ++ +V Sbjct: 305 LVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-- 417 L + P GR I V G G + ++ V ++ + + + A Sbjct: 362 LGSVRPFTTGRVIVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPASI 417 Query: 418 ----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + S L GD ++V K Sbjct: 418 RAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKG 457 >gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] Length = 493 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 162/477 (33%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 D+L+ + + + N IS +S+ I F KG +D H+ + + Sbjct: 1 MKIKDILRELNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIVDDLYK 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120 +GA + VV ++ P V D A + +A + +I +TG+ GKT Sbjct: 61 EGANVFVVEREIRKY------PYIQVVDSRIAESIIASMFYSKPYEKLITFGVTGTNGKT 114 Query: 121 TTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTLARMPVDVDFG-----IFE 166 T+ + + + + + P + M + Sbjct: 115 TSVHLFHHIMHNFGIKGSISGTVVNDIMGDKFYHPNTTPSAIEIMRNMHKTLENGGKYYG 174 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S ++ +R I IT I HL E AK I L+ G +N Sbjct: 175 MEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHILNLLKPNGIAVVN 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + ELL+ + + SFG ++D+ + + ++ ++ +V Sbjct: 235 H-----ELLQEVKNKNKNIKLVSFGVDSSSDYVIHEITTNWSGTFFKLDTPYGEKKVASQ 289 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG + A N+ + + ++ + D+D I +++ F +GR + A G ++D ++ Sbjct: 290 LIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRFEIIPEAKKLGIEIVVDFAH 349 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + V+ + +GR I V G G S + + + Sbjct: 350 TPDALE-----KVILSLRKLTKGRLITVFGA----GGQSDIGKRPMMGEVVSKYSDISII 400 Query: 407 S-----GFHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + G L + + L E + GDV+++ Sbjct: 401 TTDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVILIAG-RG 456 >gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus epidermidis FRI909] Length = 494 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 152/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H F + V +G Sbjct: 1 MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 +VVVN ++ ++ V D L + LA + T +TG+ GKT+ Sbjct: 61 CSIVVVNREL---KLKGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G + A F + K+ + E S V + Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V +++ I A++ P EGR L+ + Y Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458 >gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Turicibacter sanguinis PC909] Length = 459 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 189/463 (40%), Gaps = 31/463 (6%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SI-APQEAFFAIKGPHYDGHDF 56 M T +L I+G I + ++ R I P F ++ H Sbjct: 1 MKA-HTLGKILTVIKGTIIQGNSDILIKDVA---RYYEHIEQPNTLLFLVQ------HRN 50 Query: 57 ILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 I ++ A VVV+ ++ V V D+ A + R ++A Sbjct: 51 ID--FKRIAQYCPCAVVVDREVKELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVA 108 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 +TG+ GKTTTK+M+ LS+ K + S N + + L R+ + ++E + Sbjct: 109 VTGTSGKTTTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAP 168 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G+I + P+I +IT I HL ++ +AKAE+ + + GT+ LN DD Sbjct: 169 GDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLILNADD--- 225 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E +K + I FG FQ + + L ++ G G H Sbjct: 226 EKIKTIDTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQ 285 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L L + + A +ALS F T+ID+++N N AS Sbjct: 286 VYNALADLAATHEMGIGITQAAQALSSFKLLMN---HCEIKKGLNQATIIDDTWNINTAS 342 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 +KAA++ L +++ + +A++G + ++GE S +H ++ ++++ +NI ++ G Sbjct: 343 LKAAMNTLCELNQQHKK--VALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLAN 400 Query: 413 ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + V E +G++ + L + +++K S Sbjct: 401 NIATECSLNGFHGKVFQFEQTEGVYELLSDILNEETTLLIKCS 443 >gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU144] Length = 494 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 153/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H F + V +G Sbjct: 1 MNASALFKIIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 G+VVVN ++ ++ V D L + LA + T +TG+ GKT+ Sbjct: 61 CGIVVVNRELELK---GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G + A F + K+ + E S V + Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V +++ I A++ P EGR L+ + Y Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458 >gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 495 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 74/484 (15%), Positives = 143/484 (29%), Gaps = 55/484 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I + GI DSR + P + F + G DGH F A +KG Sbjct: 1 MKLKQLSSVLAAAVIDGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHLFAAQAAEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +VV + + +P V D A+ LA + +I +TG+ GKTTT Sbjct: 61 AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANTFFDQPSARMKMIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFE 166 ++ ++ IG+ G + + E Sbjct: 116 TYLIETIMNDHGLKTGLIGTIQMKYGNQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGT 222 + SH E + A+ T + HL +EE + + K Sbjct: 176 V-SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDEK 233 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + A + + ++G ++AD + ++ + V S + Sbjct: 234 SRKYAVLNADDDASAYFAKITAAEVITYGLGEDADVRASNISITAQGTSFHVDTFRGSAD 293 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + + ++ +L +GR + Sbjct: 294 ISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVVDEGQPYAVIVDY 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + +VL ++ EGR + V G G + ++ Sbjct: 354 AHTPDG-------LENVLRTVNEFAEGRVLTVFG----CGGDRDRTKRPIMGKIAAKYSD 402 Query: 403 HVWLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449 V ++ + ++ L + GDVV++ Sbjct: 403 VVLVTSDNPRTEDPDLILKDIEAGLIEDGVAAESYNLIVDRRKAIEKAIEMASPGDVVLI 462 Query: 450 --KS 451 K Sbjct: 463 AGKG 466 >gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] Length = 487 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 153/455 (33%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ + F A+ G +DG I A+Q+GA V + + + Sbjct: 15 DLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAVAYEVEGATVLPITEV 74 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---- 137 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + Sbjct: 75 PLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 138 -----ACIGSYNNHIGVPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + P +A + +S G + + +A Sbjct: 135 TLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A AKA++ +N DD F L A+ + T Sbjct: 195 VMTNLSRDHLDYHGTMEAYAEAKAKL-FAWNDLKCRVVNLDDDFGRQLAAEKRESRLITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +A +R+ + + + +G N+L +G + L Sbjct: 254 --SLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAVGALLGLD 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D +K L GR R ++D ++ + VL+ + PH Sbjct: 312 YALDEILKVLPKLEGPAGR--MQRLGGGTQPLVVVDYAHTPDALE-----KVLTALRPHV 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 +G+ + + G G L + V ++ + ++ Sbjct: 365 KGQLLCLFG----CGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDDIRAGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +V + + + DV+V+ K Sbjct: 421 TAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKG 455 >gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 477 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 80/475 (16%), Positives = 163/475 (34%), Gaps = 53/475 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + F ++L+ I S + + ++ +S+ + AF AIKG DGH +I A++ Sbjct: 1 MLKFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIEN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121 GA L++ D+ G I V+D AL +++ K TI+++TGS GKTT Sbjct: 61 GASLIIHTEDIAYKEG---ISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFEL 167 T ++ L I A IG+ IG + +D + L Sbjct: 118 TSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLSL 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G + + + V T ++ HL ++ AK +F+ + T + Sbjct: 178 ESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQAKHTVANIDDP 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + L ++G + + + +V + K +E + + Sbjct: 238 YGKKAKEL--------YPNTITYGINNENADYRAENVVKKDG---KVSYEVKGVEFILNT 286 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I + N L +V + A ++ A+ F+ R + L + Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFEYMENNLGLNIIIDFAHT-- 344 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +G +I + + G+ ++ F + + + ++ V + Sbjct: 345 --------PFAYECLFKSVPQGHKIYAVYGIN--GDRNKEFRVSTGKACADNDVFSVVTT 394 Query: 408 GFHVLALKDALP-------RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + + +S Y + + + GD + + K Sbjct: 395 DDPKFDTVENISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKG 449 >gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica OSU18] gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. holarctica OSU18] Length = 492 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 57/477 (11%), Positives = 137/477 (28%), Gaps = 48/477 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + + +L+ + ++ + + +DSR + F A+KG DG+ +I + Sbjct: 4 IKMKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVL 62 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120 KG LV+ ++ VF + ++ L+ LA K II ITG+ GKT Sbjct: 63 AKGVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 121 TTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166 + + L + ++ + + + E Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + +A+ + ++ HL ++ AKA++ Sbjct: 179 V--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKK 231 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + + + K K + Sbjct: 232 AIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYT 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 M + L S+ I L P +GR + + + Sbjct: 292 TKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTP 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A L ++ + + G G + + ++ S + + Sbjct: 352 DA-------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVI 400 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + ++ + + + F + GD++++ +S Sbjct: 401 TEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 456 >gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens SBW25] gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate ligase [Pseudomonas fluorescens SBW25] Length = 487 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 157/455 (34%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ + F A+ G YDG I A+Q+GA V + + + Sbjct: 15 DLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAVAYEVEGATVLPITDV 74 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140 P+ V + L+ +A ++ +TG+ GKT+ +++ AL + + + Sbjct: 75 PLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134 Query: 141 -----GSYNNHIGVPLTLARMPVDVDFG--------IFELGMSHLGEIRFLTHLVRPHIA 187 G+ T + V + +S G + + +A Sbjct: 135 TLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A+AKA++ +N DD+F L A+ + + Sbjct: 195 VMTNLSRDHLDYHGTMEAYAAAKAKL-FAWNDLKCRVVNLDDAFGRQLAAEDSEARLISY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + +A R+ + E + + +G N+L +G + L Sbjct: 254 --SLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGLD 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +D ++ L GR R + ++D ++ + VL + PH Sbjct: 312 YALDEILRVLPKLEGPAGR--MQRLGGGKQPLVVVDYAHTPDALE-----KVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 +G+ + + G G L + V ++ + ++ Sbjct: 365 KGKLLCLFG----CGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDDIRAGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +S DVVV+ K Sbjct: 421 NDVSKAAFVAGRGAAIAQLIASASADDVVVLAGKG 455 >gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] Length = 509 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 80/472 (16%), Positives = 157/472 (33%), Gaps = 43/472 (9%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 QA PQ +++DSR P F A+ G H DG DF+ A++ G V+ Sbjct: 18 AQATSARLDEWRPQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLC 77 Query: 71 NTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTI 128 + + S+ V V + G L +L +I +TG+ GK++ L Sbjct: 78 EAEALPTSVPEQEARVLAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAA 137 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------DFGIFELGMSHLGEIRF----- 177 ++ A IG+ G P L + + EL +G + Sbjct: 138 LSEALGTPAAVIGTLGV--GRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSH 195 Query: 178 -----LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 R H AV T ++ HL + A+AKA +F+ E + D Sbjct: 196 ALEQGRVTGCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQHRELALAVVNGDDRLSP 255 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 +L + + G + ++ W ++ + +E+ +G Sbjct: 256 LMLA---GLAKGVRVLATGTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFN 312 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L+ + + + A+++ A + P GR + + + T++ + + A Sbjct: 313 LDNVLLAIATLYGMGAELNALFSAAARLAPVPGR---MQRLVAENAPTVVVDYAHTPDAL 369 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----- 407 A ++ + + + V G G L + + +S Sbjct: 370 RNALEALRAHLPSSDGAKLWCVFG----CGGDRDRGKRPLMAQAAEALADRLVISDDNPR 425 Query: 408 GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G A++D + + + + D+V++ K Sbjct: 426 GEPAAAIRDEIAAGLSTDGRARAECMGGRREAIEWTLDAAGEHDIVLIAGKG 477 >gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] Length = 477 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 79/477 (16%), Positives = 152/477 (31%), Gaps = 57/477 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +F D++ I + ++ DSR + F AIKG DGHD+I A++K Sbjct: 1 MISFEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121 G+ L++ D+ I V D L +++ ++A+TGS GKTT Sbjct: 61 GSSLIIHTADI---KREEGISYIKVTDPRKTLAQISNLIYDFPSKKMDLVAVTGSNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIF 165 T +++ + I A IG+ N +G + + ++ Sbjct: 118 TSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLAL 177 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E S G + + + + T ++ HL ++ AK +FE + T Sbjct: 178 E--ASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAKMILFENAKTTIANID 235 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + L + +F + + + + ++ + K E V Sbjct: 236 DPYGKKAKELFS--------NTVTFAIDEKNADYRAEDIRKEDG---KISFKIKGCEFVI 284 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 I + N L ++ + A ++ A F + R + L + Sbjct: 285 RKIANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFEYIENDLGINIILDFAHT 344 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 S ++IAV G G+ + F + ++ V Sbjct: 345 ---------PRAYEALFESVPEGAKKIAVFGI---NGDRNAHFRRLIGNACGKFDTFAVL 392 Query: 406 LSGFHVLALKDALPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + I V + + GD V + K Sbjct: 393 TTDDPKFDDIDHINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKG 449 >gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] Length = 492 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A G + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + + D+ EL+ +Y +G S+ Sbjct: 209 HLDYHGTMEAYDAIKSRLFYWQDLQHAVINIDDEYGAELVCRLKKDCPDLAVYGYGFSER 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP + E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVGRAAVNDIILIAGKG 464 >gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 487 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 41/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +AV+T ++ HL +E A+AKA++ +N DD F L Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + T +A R K + + + +G N+L +G + Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L +D +K L GR +R A + +A VL + Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 PH +GR + + G G L + VW++ + + Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + E + +S DVVV+ K Sbjct: 417 RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKG 455 >gi|169827838|ref|YP_001697996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168992326|gb|ACA39866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 365 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 15/365 (4%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + IIAITGS GKTTTK + LS + +N + + Sbjct: 4 KKGLPIIAITGSAGKTTTKAFVGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 63 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223 E GM++ G I +++P+I+++T I AH+ NF + +A AK+E+ G+++ G + Sbjct: 64 LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 123 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LN DD L+ + + + G +AD++ + +++L G+ +E+ Sbjct: 124 ILNKDDDNSRYLETQQFKGK---MLTVGIKSDADYRAYDLQYKDIGMSFKMKLHGQEIEL 180 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G H N L + + L L+ P + T+ID Sbjct: 181 YIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPPRRLTIYN----LRDDITVID 236 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ +++P ++AAI VL+ I+ + +A++G M E+G L + + + E + I Sbjct: 237 DTVHSHPQGVRAAIDVLTNIAKKRK---VAIIGQMRELGVLREEEYRKVGEYIYKVGIDE 293 Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 GF + +A VH+ D L + + D ++VK ++ + Sbjct: 294 FITYGFRTDEMSNAAIEMGMDPSKVHHFINKDALHALLDKLIQPHDTILVKGASKTNMFE 353 Query: 460 LINLL 464 + L Sbjct: 354 TVKYL 358 >gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 488 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 75/461 (16%), Positives = 150/461 (32%), Gaps = 45/461 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 12 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAVAYEVEGSNVLP 71 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 72 LTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQRC 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 132 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 191 Query: 184 PHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 +AV+T ++ HL +E A AK + L + LK +S Sbjct: 192 FDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINLDDDFGRQMAGLKQESRL 251 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + S R+ K + + + +G N+L +G Sbjct: 252 ITYSQLDSSAY-----LYCREAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVG 306 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L +D +K L GR +R A + +A VL Sbjct: 307 ALLGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLE 359 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + PH +GR + + G G L + + ++ + Sbjct: 360 ALRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFA 415 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + V + E + + DVVV+ K Sbjct: 416 DIRPGFTAADKVSFIEGRAQAIAELIAGASADDVVVLAGKG 456 >gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena XCL-2] gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiomicrospira crunogena XCL-2] Length = 505 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 72/482 (14%), Positives = 151/482 (31%), Gaps = 48/482 (9%) Query: 8 HDLLQAIQ------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L + + + V+ ++IDSR + AF A++G G A+ Sbjct: 2 KQLADILSFFKLPESVLVNGATEVDVSALTIDSRQVERGTAFIALQGGQSHGMAHAEQAI 61 Query: 62 QKGAGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIA 112 ++GA ++ + + + + PV V + L A +I Sbjct: 62 KQGASCILTDRAGLVEFNHSHQQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSERVNVIG 121 Query: 113 ITGSVGKTTTKEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGI 164 +TG+ GKT++ + L+++ + G+ + I + + R+ ++ Sbjct: 122 VTGTNGKTSSSHYIAQMLTALNQKVALLGTLGNGWFGNLHPSINTTVDVVRLNHLLNGFA 181 Query: 165 FE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 E + +S + + +T + HL E +AK ++F Sbjct: 182 EEQADYVVMEVSSHAIELGRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKLFLTYS 241 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + D L + + ++ AD LQG Sbjct: 242 SRYQVINADDKVGQALFHE--LSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHGTFTLQG 299 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 S+ +G +N+L + +++ + KAL +GR + Sbjct: 300 GSIPFDVPLMGQFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELLTQPGYPSV 359 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 Y P +++A + + + V G G + L ++ Sbjct: 360 LID----YAHTPDALEAILKAVQHHVSDRDATVWVVFG----CGGDRDTGKRPLMGEIAE 411 Query: 399 YNISHVWLSGFHVL-----ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV-- 449 + V L+ + A+ + + +H VH F D+VV+ Sbjct: 412 TYANEVVLTDDNPRTELPDAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAG 471 Query: 450 KS 451 K Sbjct: 472 KG 473 >gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] Length = 499 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 149/486 (30%), Gaps = 53/486 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL + N +++DSR+I + F A+ G DG FI + Sbjct: 1 MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDL 56 Query: 64 GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110 GA V+V+TD G + + ++ +A + + Sbjct: 57 GAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGV 116 Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163 I ITG+ GKT+T +++ ++S+ +K N G + D Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176 Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + +S G ++ V +AV T + HL +E A+AK +F Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D L +S + A F + K + + Sbjct: 237 STLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 E+ +G N+L L + + D+ + + P GR +R+ A N Sbjct: 297 PEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 + +A L+ + H G V G G L Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCAGDLWCVFG----CGGDRDKGKRPLMGKA 405 Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + ++ + + L + + GDV+ Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465 Query: 448 VV--KS 451 ++ K Sbjct: 466 LLAGKG 471 >gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 514 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 146/453 (32%), Gaps = 39/453 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+++ S + P + + ++G G F A GA V+ + D +A +PV Sbjct: 40 TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDGLAEARDSGLPVIL 99 Query: 88 VDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D AL +A + AT+ +TG+ GKT+ +L L + + Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159 Query: 146 HIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 IG +R+ + + + +S R + +A Sbjct: 160 RIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDVAAFIN 219 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 ++ HL +++ EE AKA F+ + +++ + T S Sbjct: 220 LSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSLDTVWGQRIVEQ---SRIPMTTISAQ 276 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADV 310 AD+++ +Q + + ++ + V + N + + ++ D+ Sbjct: 277 PGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVMLVESGYDL 336 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 D L + ++ L Y P + L + P G+ Sbjct: 337 DAVAHVLDRDGGIQAYIPGRAERVSGDTGPLFFVDYGHTPDAF---EQTLQALRPFTPGK 393 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH-- 423 + V G G+ + ++ + + V ++ +++ +L Sbjct: 394 LVMVFGA---DGDRDTTKRAEMGAIAARL-ADVVVITDYHPRYEDPASIRASLIAGARAA 449 Query: 424 -----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 +H S + +GD ++V Sbjct: 450 VPDREIHEVPDPATAIRTAVSLVGEGDTILVAG 482 >gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] Length = 504 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 89/474 (18%), Positives = 166/474 (35%), Gaps = 32/474 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+++ I+ +I VN IS DSR I + F AIKG DGH++I + +G Sbjct: 7 MNILDIIENIKIKTIYGSLPTKVNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LV+ + ++ ++ V ++ + LA +K +A+TG+ GKT+ Sbjct: 67 AALVIASRYEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTVAVTGTNGKTSIST 126 Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169 ++ L + ++ + I + + P+ L DV I EL Sbjct: 127 LVHNMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEA 186 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + V +A+ T + H+ ++ A K+ +F L + Sbjct: 187 SSHAMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVL 246 Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++ + ADF KQ SE + KS E + Sbjct: 247 NKDDEYYSIMSKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEYECQ 306 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ M+ + I +++ L P G L + I + Sbjct: 307 TNYIGDFMVSNVLAALIAVWLKGYSVEKLVNILPNLGALYGRMEILGEDLPIDIISDFAH 366 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P K + +I + R +L M G S + E++S +V ++ Sbjct: 367 TPDGYKKLLEATREIRKNK---RTLLLTGMG--GGRDISKGPLIGEIISEA--DYVVITT 419 Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454 V L + + + E I GDVV++ +S Sbjct: 420 DSPRDEDVEVLMGTIEKGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVIL-ASKG 472 >gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] Length = 492 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I AV GA V + D A +P G+ ++ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] Length = 493 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 43/456 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ D+R + P F A+ G H DGHD + A+ KGA ++V + + +++ Sbjct: 22 DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 76 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V++ A+ LA K +I +TG+ GKTT ++ ++ IG Sbjct: 77 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 136 Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + I D + +S + + + IA Sbjct: 137 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 196 Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V T + HL + + + + + + + Sbjct: 197 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 256 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +A + + S + ++ + G V IG NML Sbjct: 257 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D IK+L +GR + + + ++ L I Sbjct: 317 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 369 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417 V+G G+ ++ +A++ ++ ++ S + + A Sbjct: 370 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 426 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E + GDVV++ K Sbjct: 427 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 462 >gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acidobacterium capsulatum ATCC 51196] gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acidobacterium capsulatum ATCC 51196] Length = 502 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 159/474 (33%), Gaps = 39/474 (8%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 L + + P + G+ DSR + P F A++G DG+ +I A++KGAG Sbjct: 4 SQALAGVDTTARSG-PDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGA 62 Query: 68 VVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 ++ ++ + SL + + V A+ +A + + +TG+ GKTTT Sbjct: 63 ILTDSAEAMATWSLRTDVAIAQVPHGRQAMALVAANFFGHPERQLAVSGVTGTNGKTTTT 122 Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTLARM---PVDVDFGIFELGM-- 169 +L L ++ A +G+ H P + + VD G+ E M Sbjct: 123 FLLESLLQHAQRKTALVGTIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAVMEV 182 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + + +A+ T + HL +++ +AK +F+ + Sbjct: 183 SSHALAQGRVYGIPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVSVLNL 242 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + A + +F+ + V IG Sbjct: 243 EDPHGAELALTAREHGSEIYSYGFNTGEFRAEDVQLSGGGMRFHWHTPFGHAPVTTRLIG 302 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L D +++++ H GR ++ FT++ + Y Sbjct: 303 RVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGR---FQTIDEGQPFTVVVD-YAHT 358 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +++ I++ + +GR I + G G L + V L+ Sbjct: 359 DDALRNLIALARDLVHKHKGRVITLFG----CGGDRDRTKRPLMGQAAAEGSDVVVLTSD 414 Query: 410 HVLA------LKDALPR-SIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L D LP ++ + GD+V++ K Sbjct: 415 NPRSEDPEAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKG 468 >gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium atrosepticum SCRI1043] gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium atrosepticum SCRI1043] Length = 495 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 135/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + + +DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWVQDAPACALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 +V D A+ G++ +PV + + L+ LA + + I + Sbjct: 61 AAIVAEADGEAADGTVREMHGVPVVYLSSLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + Sbjct: 121 TTTTQLLAQWSQALGEMSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWLLFAEHRVGQMIIN 240 Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + E+ Sbjct: 241 ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGQGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G NML+ L + L +D + A S P GR + + Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V + DVV+V K Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467 >gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103] gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103] Length = 499 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 137/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL G + P + +++DSR A + F AI G DG FI A+ +G Sbjct: 9 NLRDLL----GPWVPDAPARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGV 64 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + AS G + +PV + + L+ LA + I + Sbjct: 65 AAVIAEAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGK 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165 T +A + G+ L + Sbjct: 125 TTTTQLLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLT 184 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +++ SAK +F + I Sbjct: 185 AMEISSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSEHQVGVAIIN 244 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 245 ADDEVGRRWLANLPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMN 304 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L +D ++ + P GR + + Sbjct: 305 SRLMGAFNVSNLLLALATLLALGYALDDLLRVAARLQPVNGRMEVFSATGKPTVVVDYAH 364 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +G+ + G G L ++ V Sbjct: 365 TPDA-------LEKALEAARLHCKGKLWCLFG----CGGDRDKGKRPLMGAIAEQFADIV 413 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L D+V+V K Sbjct: 414 VVTDDNPRSEDPQAIVQDILSGLLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKG 471 >gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya dadantii Ech703] gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703] Length = 494 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 147/477 (30%), Gaps = 46/477 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVANAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +V D + G+ +PV +DD+ L+ LA +I +TG+ GK Sbjct: 61 AAIVAQADAASPNGTCCELHGVPVVYLDDLNQRLSALAGRFYQHPSDTLQLIGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165 TTT ++L ++ K + N +G + Sbjct: 121 TTTAQLLAQWTQALGKTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ V A T ++ HL + +AK +F + Sbjct: 181 AMEVSSHGLVQHRVEDVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSEHRVGQAVIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D+ L+ A+ + G ++ + + + + + Sbjct: 241 ADDEVGRRWLERLPDAVAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDSSWGQGVIDS 300 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L++L + L ++ + S P GR + + + Sbjct: 301 SLMGAFNVSNLLLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGRPTVVVDYAHT 360 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +A L H G+ V G G L ++ V Sbjct: 361 PDA-------LEKALEAARLHCHGKLWCVFG----CGGDRDKGKRPLMGAIAEQLADRVI 409 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V DVV+V K Sbjct: 410 VTDDNPRSEDPQAIVSDILSGLLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKG 466 >gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] Length = 474 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 75/450 (16%), Positives = 136/450 (30%), Gaps = 39/450 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 G++ DSR + F A G DG FI A+ GA V+ + + ++ Sbjct: 11 FTGMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQEGFDWNPAWTVDHQ 70 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142 V + G + +A +I +TG+ GKT+ L A +++++ IG+ Sbjct: 71 PVTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIGTLG 130 Query: 143 ---------YNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVIT 190 N P+ L M D + + +S G + + + +AV+T Sbjct: 131 NGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKVAVLT 190 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL + A AK ++F I D LL Y Sbjct: 191 NLTRDHLDYHGDMASYADAKRKLFHFGGVQAAILNQDDAFGRALLSELKAKGKHVLSYGL 250 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 D +E M+V N L +++ L A Sbjct: 251 S---GGDVCGHDLHFDAEGLHMQVHTPQGEA---MVHAKLVGRFNASNLLAVLATLLASE 304 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A+ V R + G ++ + + S A L+ + + Sbjct: 305 VALEDAVRVLADIRPAPGRMQQLGGGGQPLVVVDYAH----SPDALEKALNALREQAKAN 360 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR-SIH 423 I V G G L ++ V ++ + + + + Sbjct: 361 LICVFG----CGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGLHGP 416 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GDVV++ K Sbjct: 417 AQVEPDREQAITQAIRAAQAGDVVLIAGKG 446 >gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 478 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 85/450 (18%), Positives = 160/450 (35%), Gaps = 34/450 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G++ DSR++ P F A+ G DG FI A+ GA V+V + + Sbjct: 9 DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVEVPP-QV 67 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--- 140 + + +A A + A+TG+ GKT+T E ++ + A I Sbjct: 68 ALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGTL 127 Query: 141 ----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP-------HIAVI 189 ++N G+ + E+G++H L + A Sbjct: 128 GIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLMAAAF 187 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL + ++ A AK +F + G + DS + A T+ Sbjct: 188 TNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGITVLG 247 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G++ +L + ++ +++++ G+++ + G A N L LG+ AD Sbjct: 248 YGRAARD-LRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACGAD 306 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 TA++AL GR ++ G +D ++ + VL + PH Sbjct: 307 PVTALEALGSLEGVHGRLQKVAARA-HGAPVYVDYAHTPDALET-----VLKALRPHASR 360 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH- 423 R + V G G + L + + ++ A++ A+ + Sbjct: 361 RLVVVFG----CGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPA 416 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S L GDV+V+ K Sbjct: 417 GIEIGDRRDAIRAAVSGLQKGDVLVIAGKG 446 >gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. D5] gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. D5] Length = 486 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 144/481 (29%), Gaps = 57/481 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + LL+ ++ I + + DSR + AF I G DGHDF+ QKG Sbjct: 1 MKLNQLLERLEYEVIQGSDEAEITTFINDSRKVEKGSAFVCISGAVVDGHDFVEEVAQKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--------------- 109 A V+V ++ A + V V D AL ++ A Sbjct: 61 AAAVIVEREVEA---PEDMTVIRVADSRYALALMSAAYFGYPADKMKIIGITGTKGKTTT 117 Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 I +I VG A+ +K A + ++ + D + E Sbjct: 118 TYMIKSILEGVGHKVGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARMVEAGCDSVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S G + T + I + T + H+ E+ K + Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLL-------FQQC 228 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSM 281 + + + + +FG S+ AD + S + Sbjct: 229 RLGIANVDDEYFEDVFSRATCRVETFGFSEKADLRAVDTHLVSRPGYLGVAYHVSGLMDF 288 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V G N L + + V+ KAL R FTL Sbjct: 289 DVEIDIPGKFSVYNSLTAIAVCRHFQVPVEQIKKALK----VANVKGRIEMIPVSDEFTL 344 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + + S+L+ + + R + + G G S+ ++ EV Sbjct: 345 MIDYAHNA----MSLESLLTTLKEYEPARLVCLFG---CGGNRSRERRYEMGEVSGRLAD 397 Query: 402 SHVWLSG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450 + S A+ D + IH Y E + GDV+V+ K Sbjct: 398 LSIITSDNPRFEEPQAIIDDIKTGIHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGK 457 Query: 451 S 451 Sbjct: 458 G 458 >gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] Length = 499 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 88/457 (19%), Positives = 157/457 (34%), Gaps = 47/457 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ ++ + G Q + G+ DSR I F AIKG DGH +I A+++G Sbjct: 1 MTLAELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ + + VDD AL +LA K +I +TG+ GKTTT Sbjct: 61 AVAVVLAQER---TLPPGVAWVRVDDTRLALGQLAARFYDYPSRKLRLIGVTGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167 ++ L + + +G+ N +G + L +M + + Sbjct: 118 THLIQAILEAGGRPAGLVGTIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARAVV-M 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-N 226 +S +AV T + HL +E+ + KA +F+GL++ Sbjct: 177 EVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPKY 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + ++ AL + ++G + + R + S V G + Sbjct: 237 AVINGDDPYGSRLAALTPVPVVTYGCTPGCQVRARDIHLETGGSTSLVTWPGGEAAMELR 296 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G + N L L + D AI+AL F GR FT++ + Sbjct: 297 LTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGR---LERVDQGQPFTVVVDYA 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + +VL GR + V G G L + + + Sbjct: 354 HTPDG----LENVLRAARQVTRGRLLVVFG----CGGDRDRGKRPLMGRAAARLSDYSII 405 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + + + E + + I + + Sbjct: 406 TSDNPRS--------------EDPEAIIADILPGVRE 428 >gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] Length = 495 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 156/480 (32%), Gaps = 42/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +L+ + + ++ + +DSR I + F AI+G DG FI A Sbjct: 1 MNTPKALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKA 60 Query: 61 VQKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA +V+ D G +PV + ++ L++LA + +I +TG+ Sbjct: 61 IAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGT 120 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI--------GVPLTLARMPVDVDFGIFE-- 166 GKTT +++ L + A +G+ N ++ + Sbjct: 121 NGKTTITQLIAQWLELLGHKSAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L S G ++ + V + ++ HL ++ A AK +F Sbjct: 181 QYTSLETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I D + +K HA+G+ + ++ + + ++ E Sbjct: 241 IINVDDAVGAQWVKQLPHAIGVSLLAQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+L+ L + L + + P GR + ++ Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKMVVDY 358 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H G+ A+ G G + ++ Sbjct: 359 AHTPDA-------LEKALRALHVHCTGQLWAIFG----CGGDRDRGKRPMMAAIAEQFAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + L H + + D++++ K Sbjct: 408 RVILTDDNPRSESPQAIVADMLAGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKG 467 >gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [uncultured Desulfobacterium sp.] Length = 537 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 142/476 (29%), Gaps = 67/476 (14%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + S+ + P F A+ G DGHDF+ A++KGA +VV V Sbjct: 50 DPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKKTVK-----DS 104 Query: 84 PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + V++ AL ++A II ITG+ GKTTT ++ L + IG Sbjct: 105 IIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGFKTGVIG 164 Query: 142 SYNNHI---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + N + L+ M +D + + +S F Sbjct: 165 TINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVV-MEVSSHAIDLFRIEGCFFDS 223 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGI 244 AV T + HL +E + K ++F G + + + Sbjct: 224 AVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERGKALSGILS 283 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 G D + + + + + +G H +N++ G+ S Sbjct: 284 TKCIKTGSDSECDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNIENIMSAAGVAS 343 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + K + GR ++ + + +A +VL + Sbjct: 344 GLGISSEIIKKGIKSLSVIPGRLEKINNEAGISVYVDYAHTPDA-------LKNVLLSLR 396 Query: 365 PHGEGRRIAVLGD-----------MCEM-GELSQ---------------SFHIDLAEVLS 397 P +GR I V G M E+ G+LS + + Sbjct: 397 PIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTEIINQIITGIK 456 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 I +L + GDVV++ K Sbjct: 457 RNKIDR---YEPTAPSL---FSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKG 506 >gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 518 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 78/496 (15%), Positives = 158/496 (31%), Gaps = 57/496 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQ----------GFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 + LLQ ++GI+ +S+ + P + F A +G D HD Sbjct: 12 SLKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAHD 71 Query: 56 FILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114 +I A+ GA V++ D + + +IP F V + L KLA +I Sbjct: 72 YIEEAIANGASTVILERADYIDKVKDSAIPYFKVRNGRKTLAKLASTFYDHPSHRLIVTG 131 Query: 115 GSVGKTTTKEM-----------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 + T + L +++ + P + Sbjct: 132 ITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYSLIEKMV 191 Query: 164 IFEL-----GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 E+ +S G + + IA IT I+ H+ ++ +K + F+ L Sbjct: 192 QKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTKFFQMLS 251 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---------NADFQLRKWKQCSEQ 269 LN DD + K+ + I S + + + Sbjct: 252 PDSISVLNADDPNAISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTYQIKEELP 311 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++ +S + G H N L+ + + + D + IK F R Sbjct: 312 TVTNKPVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQVIKTAEQFPGLFRRL-- 369 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + FT+ID+ NPAS+++ +SQ+ + A+ G + L S Sbjct: 370 --EVIYKNSFTIIDDC-AHNPASIRSVFETISQLPFNRLVIVFAIRGSRGDQINLENS-- 424 Query: 390 IDLAEVLSLYNISHVWLS--------------GFHVLALKDALPRSIHVHYSETMDGLFL 435 L + ++ + + ++ L + ++ Sbjct: 425 QRLVKWVNHLPVRELIITTSKSHAAPTNQVHSSEQTAFLSPLKTSGTPFKFIHNLEETIE 484 Query: 436 FIQSSLVDGDVVVVKS 451 + + GD++++ Sbjct: 485 TALNEVKQGDLLMILG 500 >gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] Length = 505 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G +DGHDFI A+QKG+ + Sbjct: 14 QDLIKYVKGSL-----NLEISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDL--DFYSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L + + G + V + + Sbjct: 127 YYIYLLLKKRGIKVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAV 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V AV T I HL I + K +F+ + Sbjct: 187 LESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + ++ + K+ K+ ADF + + ++ + E +G Sbjct: 244 GFGVINLDDVYSSDFKNAIKKSFTYSLKNSQADFFVSFIDEKTDSTRFEFYYKGIKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G +N++ L +VS L I V G+ L Q F +ID Sbjct: 304 VNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLD-GRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L +S + Sbjct: 363 AHTPGAFS-----KLFPIFKRFAINRLISVFGSAGE----RDVAKRFLQGQISDIYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 LLCDEDPRGENSMCIIKDIAKGIVNKVVNRDLFFIPDRRQAIEKAISLARAGDLV 468 >gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] Length = 511 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 78/480 (16%), Positives = 146/480 (30%), Gaps = 40/480 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + +N IS +S+ + F + G + DG F + A++ GA Sbjct: 6 LHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122 ++ IGS+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGPAAKQKIGSIDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 +L L + K G ++ ++ + L Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE---IFEGLEKTGTIFL 225 +S + AV T + HL S +E K + EK G L Sbjct: 186 VSSHSIAQKRISGCEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGISVL 245 Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N+DD + L K +L I + F + K S + ++ Sbjct: 246 NHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKEKIQ 305 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + I+ L + K + F GR ++ + +L Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSRSLP 365 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + VL I +G+ I V G G L ++ Sbjct: 366 TVIVDYAHTP-DGLKKVLQSIKKLCKGKLITVFG----CGGDRDLGKRPLMGSIAEEFSD 420 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++++ + + + + + D+V++ K Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKG 480 >gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 496 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 148/449 (32%), Gaps = 39/449 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D ++P G+ D+ Sbjct: 29 DSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSI-----------K 134 LA S I +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIGTVGN 148 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITT 191 + + + P+ + + + +S G + + V AV T Sbjct: 149 GFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQTAVFTN 208 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL +E + K+ +F + + D EL+ +YS+G Sbjct: 209 LTRDHLDYHGTMEAYGAIKSRLFYWRGLKHAVINSDDPYGAELIGRLKADRPDLAVYSYG 268 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + AD ++ + S+ + + V +G AQN+ +G++ +D Sbjct: 269 FGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVLCADGHPLD 328 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + AL P GR + Y P +++ A++ L +I P G Sbjct: 329 KVLAALEKIRPATGRMDCIIESGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALW 384 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSIHVH 425 V G G L ++ V ++ + + D LP Sbjct: 385 C-VFG----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAVPAPE 439 Query: 426 YSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 E F + D++++ K Sbjct: 440 CVEADRKAAIGFAVKNAASDDIILIAGKG 468 >gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter aphrophilus NJ8700] gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter aphrophilus NJ8700] Length = 488 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 74/468 (15%), Positives = 143/468 (30%), Gaps = 44/468 (9%) Query: 17 HSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 H +GI +G VN I ++DSR+ F AIKG DG +I A+Q GA V+ D Sbjct: 6 HLLGIDIEGDVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADS 65 Query: 75 VASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130 + ++P+ + L++LA + + + T +A Sbjct: 66 AQQHLQIHYEQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQ 125 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGE 174 + + G+ + + + +S G Sbjct: 126 WTQLLGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGL 185 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 ++ V AV T ++ HL +E A+AK +F L+ I D Sbjct: 186 VQHRVEGVHFSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQIIDADDPIGAAW 245 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L+ +A+ + T F + + + + ++ E+ IG Sbjct: 246 LRELPNAVAVSTNPDFSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVS 305 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L+ + L + + +++ GR + + +A Sbjct: 306 NLLLVTATLLTLGYSLSELVNSVNKLTGVCGRMEMLTATHKPTVIVDYAHTPDA------ 359 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410 L H G+ + G G L ++ HV + + Sbjct: 360 -LEKALQAARLHCHGKLWCIFG----CGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTE 414 Query: 411 -----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + S V+ DV+++ K Sbjct: 415 DHTQIMADILKGFINPQAVQVIHQREEAIATAIKSAVENDVILIAGKG 462 >gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] Length = 486 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 89/479 (18%), Positives = 139/479 (29%), Gaps = 65/479 (13%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG----PHY--DGHDFIL 58 T +L + P V G++ DSR + P F A+ G DGH FI Sbjct: 1 MTLKELFAPLG----QEAPPLPVRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIP 56 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 A+++GA VV D+ L +P V D AL LA + +TGS Sbjct: 57 EALRRGAIAVVGEQDLT-----LPVPYARVADSRQALALLARRFYGEPDRALRLFGVTGS 111 Query: 117 VGKTTTKEMLTIALSSI----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 GK+TT +L L + P A + D G+ E Sbjct: 112 KGKSTTAFLLHHLLEEAALLSTVGLRLGGEARPPIGHFTTPEAPEVYAFLREAADRGLRE 171 Query: 167 L---GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 SH ++ + L + HL E +AK + E + Sbjct: 172 AVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTPEAYFNAKTLLVERSD----- 226 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 +L L + + E + EV Sbjct: 227 --------LAVLNTSLTHLERLRQRPHLLFGPGGEVWAEGVREEEGLRFTLHTPWGKGEV 278 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG H +N L ++ ++ LS F GR + F +ID Sbjct: 279 HLPLIGAHNVENALAASAAALAAGVPLEKVLERLSGFPGVPGR---MEVVQEKPFRVVID 335 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ L + P +GR + V+G GE D+ V + Sbjct: 336 FAHTGKSLEA-----ALRTLRPTTQGRLLLVVGAA---GERDPRRREDIGRVAARLADKA 387 Query: 404 VWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H A+ + L +GD V++ K Sbjct: 388 FFTEEDHRTEDLGAILEAMARAAAAEGGRFELVPDREEAILKAILEAQEGDTVLLAGKG 446 >gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis FSC198] gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis FSC198] gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis NE061598] Length = 479 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 57/475 (12%), Positives = 137/475 (28%), Gaps = 48/475 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + + +DSR + F A+KG DG+ +I + K Sbjct: 1 MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G LV+ ++ VF + ++ L+ LA K II ITG+ GKT+ Sbjct: 60 GVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + + E+ Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + +A+ + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + + K K + Sbjct: 229 INIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L P +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + + ++ S + ++ Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + ++ + + + F + GD++++ +S Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 451 >gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] Length = 492 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 76/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D ++P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88 Query: 92 LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138 LA + +TG+ GKT+ + L A + + Sbjct: 89 KHRAGMLAAQVYGNVSDSLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + + P+ + + + +S G + + V A+ T + Sbjct: 149 TLEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D+ EL +Y +G S+ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDEYGAELAGRLKKDCPDLAVYGYGFSEQ 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q + +G AQN+ + ++ ++ ++ Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLE 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP + E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVSNPERVEV 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAVAIRYAVEQAAANDIILIAGKG 464 >gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia ruckeri ATCC 29473] gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia ruckeri ATCC 29473] Length = 490 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 71/453 (15%), Positives = 143/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G V+ + +A+ S+ +PV Sbjct: 21 TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGIAADASITAMHGVPVI 80 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + ++ L++LA + +I +TG+ GKTTT ++L ++ + + Sbjct: 81 YLSNLNQHLSRLAGQFYQQPGAALRLIGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 140 Query: 144 NNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + + +S G ++ + AV T Sbjct: 141 NGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGLVQNRVAALPFAAAVFT 200 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + AK +F + I DD L A+ + Sbjct: 201 NLSRDHLDYHGDMASYELAKWLLFSTHQSEHKIINADDDVGLRWLSQLPQAVAVSMENKV 260 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + ++ +G N+L+ L + L Sbjct: 261 PQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAFNVSNLLVALSTLLSLDYP 320 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A P GR + + + +A L+ H +G Sbjct: 321 LADLLAAAPQLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 373 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 374 QLWCVFG----CGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVADILGGLMD 429 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + DVV+V K Sbjct: 430 AGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKG 462 >gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 510 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 156/481 (32%), Gaps = 49/481 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL IG V+G+S DSR I AFF++ G + DG +I A+ G Sbjct: 1 MKLRELLSDESAFVIG-DEDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A +++ ++ + + + D+ ++ I+ ITG+ GKTT Sbjct: 60 ASVIITDSKYDTN----DVAQVVIKDIFRFMSLFGAKFYNYPDRELNIMGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------GVP-----LTLARMPVDVDFGIFELG 168 M+ L++ IG+ N P + R + + Sbjct: 116 TYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDISNNGIKYLVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----GLEKTGTIF 224 +S + + AV T + HL ++ AK+ +F+ G + Sbjct: 176 VSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCA 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + D + K +YS + ADF+ K ++ + + K + Sbjct: 236 IINVDDEYGRKLLKVGISAEIKLYSAIEKNAADFKASNIKVTNKGAVFNLVFCNKRARIR 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG H N L L + A++ L+ GR ++ + Sbjct: 296 IKHIGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPGRLEKVNTIGLGFEIVVDYA 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + S VL + R I V G G L +++ V Sbjct: 356 HTDDALES------VLRALKDLNPKRIIIVFG----CGGDRDRAKRPLMGKIAVEMSDFV 405 Query: 405 WLSGFHVL---------ALKDALPRS--IHVHYSETMDGLF-LFIQSSLVDGDVVVV--K 450 +++ + ++ + R+ + + I + GD++++ K Sbjct: 406 FVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAGK 465 Query: 451 S 451 Sbjct: 466 G 466 >gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] Length = 508 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G H+DGHDFI A+QKG+ + Sbjct: 14 QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + D+ S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDV--DFYSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L I + G + + + I Sbjct: 127 YHIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSNMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + K+ KS ADF + + ++ + E +G Sbjct: 244 GFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDFTRFEFYHKGVKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIV-DKLDCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 VLCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 550 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 43/456 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ D+R + P F A+ G H DGHD + A+ KGA ++V + + +++ Sbjct: 79 DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 133 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V++ A+ LA K +I +TG+ GKTT ++ ++ IG Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193 Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + I D + +S + + + IA Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253 Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V T + HL + + + + + + + Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +A + + S + ++ + G V IG NML Sbjct: 314 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 373 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D IK+L +GR + + + ++ L I Sbjct: 374 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 426 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417 V+G G+ ++ +A++ ++ ++ S + + A Sbjct: 427 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 483 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E + GDVV++ K Sbjct: 484 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 519 >gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM 1279] gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM 1279] Length = 481 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 158/480 (32%), Gaps = 63/480 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57 + T +L G P V G++ DSR + P F AI G +DGHD+I Sbjct: 1 MPTLQELF----GLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYI 56 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115 A+Q GA VV ++ LS+P V D AL L A + ++ +TG Sbjct: 57 PQAIQNGAVAVVGMREL-----HLSVPYLRVADARAALADLSAAFWGYPAQRLELLGVTG 111 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFEL------ 167 S GKTT +L L + + + IG + E+ Sbjct: 112 SKGKTTVAVLLHHLLQRARPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHRFVQ 171 Query: 168 --------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 +S + + V T + HL +E + K ++ E+ Sbjct: 172 AGCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKLL---ER 228 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + +N D+ + + L+ + ++ + D+Q + S EV Sbjct: 229 SRFAVVNSDNPWTQTLRGR--------PQTWSYGQQGDWQAHNLVESSTGLEFEVVSPMG 280 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V +G A+N L + + + V+ + L+ F GR + F Sbjct: 281 RFAVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGR---MQLVQAAPFR 337 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D ++ L + P +GR + V+G G S + + +V + Sbjct: 338 VVVDFAHTGASLEA-----ALQTLRPTTQGRLLVVIGAA---GNQDPSRRVGIGQVAARL 389 Query: 400 NISHVWLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ H + A+ A + GD ++ Sbjct: 390 ADLAIFTEEDHRTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSG 449 >gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] Length = 474 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 82/479 (17%), Positives = 158/479 (32%), Gaps = 64/479 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P T L + V G+S +S++I +AFFAIK +G+DFI A Sbjct: 1 MTP--TLKQL-----------FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADA 43 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA LV+ + + + V V+D+ L++ + T+IA+TG+ GK+ Sbjct: 44 LEKGAALVITD-----DKKNTTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKS 98 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE--- 166 + + S I + A IG+ + G+ T + + + Sbjct: 99 SVVSYIAQIYSLIGQKAASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGI 158 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 S G + ++ ++A T+ + HL E AK ++F Sbjct: 159 DYLAFEASSHGLDQQRLGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDG 218 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I + D G + N + + K+ + Sbjct: 219 IAILNSDIEEIKFIKDYLDKHKIKYLCVGANGNCKITKTNSSL--KGQNINFIFDNKNYD 276 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG A N+L+ V + D I AL+ +GR +R + Sbjct: 277 FDTPIIGSFQASNLLIAGPSVYYTSFDFSKVINALTKVKAVKGRMERVNRTNIFIDYAHT 336 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++ +K G+ + G G + L ++ Sbjct: 337 PDALEKALTELKNI--------KAKGGKLSIIFG----CGGNRDTTKRKLMGKIAASIAD 384 Query: 403 HVWLSG-----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +V ++ A++ + I + + ++L D++++ K Sbjct: 385 NVIVTDDNPRHEDPKAIRQEIISGIVTTNYIEIADRKEAIKYGINNLKKDDILLIAGKG 443 >gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] Length = 495 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 155/480 (32%), Gaps = 42/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +L+ + + ++ + +DSR I + F AI+G DG FI A Sbjct: 1 MNTPKALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKA 60 Query: 61 VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA +V+ D + G + +PV + ++ L++LA + +I +TG+ Sbjct: 61 IAQGANIVLAEADAHHAHGQVEFREGVPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGT 120 Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD--------F 162 GKTT +++ L ++ T T + + Sbjct: 121 NGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L S G ++ + V + ++ HL ++ A AK +F Sbjct: 181 QYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I D + +K HA+G+ + ++ + + ++ E Sbjct: 241 IINVDDAVGAQWVKQLPHAIGVSLLVQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+L+ L + L + + P GR + ++ Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKMVVDY 358 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H G+ A+ G G + ++ Sbjct: 359 AHTPDA-------LEKALRALRVHCAGQLWAIFG----CGGDRDRGKRPMMAAIAEQFAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + L H + + D++++ K Sbjct: 408 RVILTDDNPRSESPQAIVADMLAGLTHPERAHIEHNRFHAASYALQNAGAQDIILLAGKG 467 >gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica LVS] gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FSC200] gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. holarctica FSC022] gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. holarctica LVS] gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. holarctica FSC022] Length = 487 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 57/475 (12%), Positives = 137/475 (28%), Gaps = 48/475 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + + +DSR + F A+KG DG+ +I + K Sbjct: 1 MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G LV+ ++ VF + ++ L+ LA K II ITG+ GKT+ Sbjct: 60 GVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + + E+ Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + +A+ + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + + K K + Sbjct: 229 INIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L P +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + + ++ S + ++ Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + ++ + + + F + GD++++ +S Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 451 >gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] Length = 493 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 77/462 (16%), Positives = 152/462 (32%), Gaps = 52/462 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V+ + +DSR + P F A+ G DG +FI A+++GA V+ V + G++ Sbjct: 22 SVLVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEI 81 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV +D + L+ +A +I +TG+ GKTT +++ L + A Sbjct: 82 IDDVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAV 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183 +G+ N G L + + L +S G + + Sbjct: 142 MGTTGN--GFLDNLQQAANTTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALS 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSH 240 V T ++ HL +EE A+AK E+F + I D ++ L Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLELFTQHQCERAIINVDDEVGHAWATQLSNAIA 259 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 D + + ++ + S ++ IG A N+++ Sbjct: 260 VSLKPNTEFESAIWATDVRYAE-----SGITIQFDGKFGSGQLHAPLIGEFNATNLMLAF 314 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L D ++ P GR + ++ + +A L Sbjct: 315 ATLLSLGKDKQALLETAGQLQPVLGRMELFQTEDRAKVVVDYAHTPDA-------LEKAL 367 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--------- 411 + H EG+ A+ G G + + ++ V L+ + Sbjct: 368 QALRVHCEGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIV 423 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + + D++++ K Sbjct: 424 KDMLSGLSKPAEAIVQHDRFKALSYAVENASPKDIILLAGKG 465 >gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 487 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 163/477 (34%), Gaps = 53/477 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL + + + V I+ D+R++ F +K + D H F A+++GA Sbjct: 6 LVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAIKQGAT 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++++ ++ + + VDD A++ +A + +I +TG+ GKT+ Sbjct: 66 ILMIEHEI--DQVPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTGTNGKTSITH 123 Query: 125 MLTIALSSIKKTYACIGSYNN------------HIGVPLT-------LARMPVDVDFGIF 165 + LS++ + IG+ N + P + +G+ Sbjct: 124 FIAQVLSTLGEKTGVIGTIRNTLEGEKLKTKKINPTTPDAIELQASLKEMLDKGATYGVM 183 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ S L + R + + V T + HL +E +AK ++F+ Sbjct: 184 EVTSSALAQNRVYGMAYQ--VGVFTNLTQDHLEEHGTMEAYGAAKLKLFKN-------CR 234 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + +L+ K G + ++G K ADF+ + Q ++ GK + Sbjct: 235 IGIVNQDDLMAEKIKQEGHCKVITYGIDKKADFKAEQIHQGLTGVDFKLIYLGKQYSINF 294 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N L T+ + L ++ ++AL + GR + Sbjct: 295 PVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRFQIIPNTKGVLVVVDYA-- 352 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 S + +L G+ V G G+ S ++ + Y+ + Sbjct: 353 -----HSPDSLKQLLQTTKDLISGKLTVVFG---CGGDRDTSKRAEMGTMAGAYSDLTII 404 Query: 406 LSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + + I + + + +GD VV+ K Sbjct: 405 TSDNPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAVVIAGKG 461 >gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC 33656] gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC 33656] Length = 495 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + ++ + DSR + F I G D HDFI V+KG Sbjct: 6 MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 65 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VVV D+ G + VD+ AL ++ A K I ITG+ GKTTT Sbjct: 66 AAAVVVEKDVTPIEG---VTYIKVDNTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 M+ L S IG+ + G R+ + E + Sbjct: 123 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 182 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + I V T + P H+ + A+ Sbjct: 183 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKD-----FADYMHCKSLLFRQCRLGI 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++G + + E + V+ + + Sbjct: 238 FNGDDEHLEGVMKGHTCQVETYGYKSTNNLIAENVELKKEHGALGVKYHVSGLLDFDVEV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L ++I H +G+ + + + +ID ++NA Sbjct: 298 NVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSVKGRIEIVPVTKRYTLMIDYAHNA 357 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A S+L+ + + GR + + G G ++S ++ EV S V S Sbjct: 358 -----MALESLLTTLKEYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSRLADLTVVTSD 409 Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + + DGD++V+ K Sbjct: 410 NPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 463 >gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] Length = 492 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F I D+ EL+ +Y +G S++ Sbjct: 209 HLDYHGTMEAYGTIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAVYGYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q +G AQN+ + ++ +D + Sbjct: 269 ADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYSVERAAANDIILIAGKG 464 >gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica Y11] Length = 496 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 140/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL P+ + +++DSR A + F AI G DG +I A+ +G Sbjct: 5 NLRDLL----APWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VV D VA S +PV + ++ L+KLA + A + + + Sbjct: 61 AAVVAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G I+ + AV T ++ HL + +AK +F + I Sbjct: 181 AMEVSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + N + + + + ++ Sbjct: 241 ADDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + A P GR + + Sbjct: 301 SRLMGAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A ++ AA H +G+ V G G L ++ V Sbjct: 361 TPDALEKALVAA-------RLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + H DVV++ K Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 467 >gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi ATCC BAA-1116] gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 72/459 (15%), Positives = 141/459 (30%), Gaps = 46/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V+ + +DSR + F AI G DG FI A+++GA V+ + G++ Sbjct: 22 SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI 81 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV +D + L+++A +I +TG+ GKTT +++ + Sbjct: 82 VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWID--LVGSKA 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183 G L + L +S G I+ + Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALS 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V T ++ HL +EE A+AK +F + + D K ++AL Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTEHQCGHAVINVDDVVGAAWAKQLNNALA 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + +E + + IG A N+++ + Sbjct: 260 VSLKPT--TEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTL 317 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + P GR + ++ N + +A L + Sbjct: 318 LSLGFSKQDLLATAGQLQPVLGRMELFQANDNAKVVVDYAHTPDA-------LEKALQAL 370 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414 H G A+LG G + + ++ V L+ + + + Sbjct: 371 RVHCHGELWAILG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKGM 426 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + D++++ K Sbjct: 427 LAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465 >gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2] gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2] Length = 514 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 70/471 (14%), Positives = 144/471 (30%), Gaps = 60/471 (12%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + I DSR + P F A++G DGHD++ A+++GA VVV + Sbjct: 27 DPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYVEDALERGAAAVVVQQRVPGKQ----- 81 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136 + V D A+ +A ++ ITG+ GKTTT +L + Sbjct: 82 RMVEVADTRKAMASIAARFYDNPSESMCLVGITGTNGKTTTSFILESIFAQAGHCVGVIG 141 Query: 137 ----YACIGSYNNHIGVPLTLARMPVDVDF---GIFE--LGMSHLGEIRFLTHLVRPHIA 187 +NN + P ++ + + + +S R Sbjct: 142 TVNFRYRGKLFNNPVTTPESIDLQRILAQMKAAQVSHVVMEVSSHSIDLHRVRNCRFDAG 201 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFELLKAKSHALGIK 245 V T + HL + + K F + +G + + Sbjct: 202 VFTNLTQDHLDYHRTMGRYFACKRRFFTRILPSGPKALTAMAVINLDDEKGQALRDAAAT 261 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + G+ AD + + +++ G +G +N+L G Sbjct: 262 KVVTTGRDSRADVCALDLAETITGTTGILKIDGAPYPFSSALVGAFNVENILSAAGAAHA 321 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D ++ + GR +R + F Y P ++ + + L +P Sbjct: 322 IGIDPQVIVRGIEGCKGVPGRLERVEPDNGRHVFVD----YAHTPDALMSILETLKAQAP 377 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419 I V+G G + ++ ++ + + +++ L Sbjct: 378 KR---IITVVG----CGGDRDRSKRPIMGQIAATLSDVAIITSDNPRSEDPHGIIQEILK 430 Query: 420 ---------------RSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV---KS 451 ++ + + E ++ GD ++V K Sbjct: 431 GIDTALCPELKPDQLKTGNGFFVEPDRRKALELAVAASTPGD-ILVAAGKG 480 >gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] Length = 499 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 148/471 (31%), Gaps = 51/471 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL I G I + DSR++ P + F + G H DGH FI ++ G ++ Sbjct: 17 LLTDIGGDWNKIPADCTLKS---DSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLL 73 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 + + L IP V DV A+ +A A K + A+TG+ GK+TT M+ Sbjct: 74 IQRPVSG----LPIPWIQVTDVRAAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVR 129 Query: 128 IALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLG 173 L + +G+ G + VD + S G Sbjct: 130 SILQNCGVKCGLLGTIVYDDGSKSVLADRTTPEGSEIQQFLKNMVDNGCQACSMECSSHG 189 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + AV T + P HL +E AKA +F K Sbjct: 190 IAQGRLSGCLYDGAVFTNLTPEHLDFHGTMENYYEAKAALFRKYLKP----GAAVAPNAA 245 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHM 292 + A ++ A Q K + S + + K V G H Sbjct: 246 SEHGRRLAAEFPQAMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKMGRVHIPLSGRHN 305 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N L + D + L++ GR +R + ++ Sbjct: 306 VENALGAAAVCLAEGCDEKKVVAGLALMPQVPGRMERLNLDNGVRVVIDYAHTADS---- 361 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----- 407 ++L + P EGR +++ G G + H L + ++++ Sbjct: 362 ---LKALLETLRPLTEGRLVSLFGH----GGDRFAGHRSLLGRAAAQKADRIFVTMDNPR 414 Query: 408 GFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVVKS 451 L + + + I ++ D GD++V+ Sbjct: 415 TEDPLKIAEQIVAGIEEVRADGCWSIELPRDAAICKALDWCRRGDLLVLSG 465 >gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 252 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 117/253 (46%), Positives = 148/253 (58%), Gaps = 10/253 (3%) Query: 1 MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M PLW L A G IG + G SID+RS+ P + FFAI+G DGHDF+ Sbjct: 1 MTDAPLWIPSALEAATGGRLIGEP--RAIRGASIDTRSLEPGDLFFAIRGEARDGHDFVQ 58 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113 A+ KGAG VV PV V D VL A+ +L +AAR RS+A I+A+ Sbjct: 59 AALDKGAGAAVVAASRADDCAGAG-PVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAV 117 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TGSVGKT TKE L LS+ T+A + SYNNH GVPLTLARMP FG+FE+GM+H Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEAAQFGVFEIGMNHGA 177 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 EI LT +VRP +A+ITT+ P H+ +F + IA AK EIF GL+ G +N D++ FE Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNANFE 237 Query: 234 LLKAKSHALGIKT 246 L A + A Sbjct: 238 RLLAHAQASKAGR 250 >gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] Length = 493 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 75/459 (16%), Positives = 150/459 (32%), Gaps = 46/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V+ + +DSR + P F A+ G DG FI A+++GA + V + G++ Sbjct: 22 SVLVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEI 81 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV +D + L+ +A +I +TG+ GKTT +++ L + A Sbjct: 82 IDDVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAV 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183 +G+ N G L + + L +S G + + Sbjct: 142 MGTTGN--GFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALS 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V T ++ HL +EE A+AK +F + I D+ + A + Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCKRAIINVDDEVGHQW--ASQLSNA 257 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I + + ++ + S E+ IG A N+++ + Sbjct: 258 IAISLKPNTEFESAIWATEVSYAESGITIKFDGKFGSGELHAPLIGEFNATNLMLAFATL 317 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + ++ P GR + ++ + +A L + Sbjct: 318 LSLGIEKQALLETAGQLQPVLGRMELFQTEDRAKVVVDYAHTPDA-------LEKALQAL 370 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LAL 414 H EG+ A+ G G + + ++ V L+ + + Sbjct: 371 RVHCEGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDM 426 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + + D++++ K Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKG 465 >gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] Length = 524 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 78/466 (16%), Positives = 153/466 (32%), Gaps = 51/466 (10%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 +++DSR++ P + F A +G DG FI HA+++GA VV D A P V Sbjct: 34 HLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKTPNLPV 93 Query: 89 DDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D+ +A +I +TG+ GKT+ + A++++ + A IG+ Sbjct: 94 PDLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGTLGA- 152 Query: 147 IGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVIT 190 G P + + + +S G ++ + +A++T Sbjct: 153 -GFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATFAVAMLT 211 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E A+AKA +F + D +LL Y F Sbjct: 212 NLSRDHLDYHGTMEVYAAAKARLFHWRGLKYAVLNLDDVFGMQLLHDLEGTGTGMIGYGF 271 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLMTLGIVSI 305 +A +++ ++ + + N LG+++ Sbjct: 272 TDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNASNLLGVLAT 331 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363 L A +A+ + R + +G LI Y P +++ ++ L + Sbjct: 332 LLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEKVLTTLREAVD 391 Query: 364 -------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413 G GR + V G G L ++ ++ + + Sbjct: 392 AGFPGGKPETGSGRLVCVFG----CGGERDQGKRPLMGEVATRLADEAIITSDNPRSEDP 447 Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + GDVV++ K Sbjct: 448 DSIIRGIAVGAAANHRIE--KDRAAAIHRAIRGTHKGDVVLIAGKG 491 >gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] Length = 500 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 81/465 (17%), Positives = 146/465 (31%), Gaps = 41/465 (8%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G V G +ID R +AP F A +G +++ DFI A++ GA +V ++ Sbjct: 11 GLPEADAGDATVTGFAIDHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAK 70 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 ++ +LA + TI+A+TG+ GKT+T EM Sbjct: 71 VE----GALHIASEEPRRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWR--MC 124 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------------GMSHLGEIRFLT 179 + P + + L S G ++ Sbjct: 125 GERAASIGTLGVTTPDGSVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRN 184 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +R T + HL ++ A + E I + + +A Sbjct: 185 EGLRVKAGAFTNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRA 244 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 HAL K + +L + ++V+ G+S +V IG + A N L Sbjct: 245 IEHALSRKLHVLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANAL 304 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 ++ G+ A A+ P GR C G ID ++ + A Sbjct: 305 VSAGLAIATGAAPAQVFDAIGRLQPVRGR-LERACLTASGAPVYIDYAHTPDALEA-AIA 362 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------G 408 ++ + G+ I V G G + ++ + V ++ G Sbjct: 363 ALRPHVDGEKGGKLIVVFGA----GGDRDTGKRAPMGKVAADSADLVIITDDNPRGEDPG 418 Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + HV + D+++V K Sbjct: 419 EIRAAVLEGAGGADHVRAIGGRREAIAAAIGQVGAHDIILVAGKG 463 >gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Streptobacillus moniliformis DSM 12112] gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Streptobacillus moniliformis DSM 12112] Length = 405 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 154/463 (33%), Gaps = 62/463 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN L T +L I + +SI+S+ P FFAI G+D+ A Sbjct: 1 MNKLNTLEEL---IGKKIFSLKEDFK---VSINSKEATPNSVFFAI----NKGNDYAKEA 50 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA V+ + + V+D + + + A R +K +I ITGS GKT Sbjct: 51 ESMGA-FVIYDKKELDIHNGH-----YVEDSVKFMQEFARRYRKNNKFIVIGITGSNGKT 104 Query: 121 TTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 T K++L LS+ + Y G+YNNHIG+P T+ + + E+GMS+LGEI L Sbjct: 105 TVKDILHSVLSNKGVRVYKTQGNYNNHIGLPFTILSAKDSDEILLLEMGMSNLGEIDLLG 164 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 ++ +P ++IT I +HL +E + AK EI K + + +K Sbjct: 165 YIAKPDYSIITNIGQSHLEYLKTMENVFKAKTEIIPHTSKKVVVNGK------DEFLSKL 218 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + D L + + + + Sbjct: 219 DGVIKVETKDIKTNLLGDHNLLNVSIVDSLLKYMGFDDLCYENIELTDGRFQIVKG---- 274 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 S K + + + K + Sbjct: 275 -------KYTYINDAYNASPISMKASLETFSKICNESFKIIALGDMLELGSDEKKYHEDL 327 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + R M + E ++ +L +IS + + +K A+ Sbjct: 328 SYVLRETNFDRLFLYGKRMKYLYE----------KLCNLDDISFKFEYFDNKEDIKKAI- 376 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 + ++ + VV++K S S ++ Sbjct: 377 --------DNIETIKEK---------VVLLKGSRSMKMEDIME 402 >gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] Length = 493 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 71/459 (15%), Positives = 140/459 (30%), Gaps = 46/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V+ + +DSR + F AI G DG FI A+++GA V+ + G++ Sbjct: 22 SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI 81 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV +D + L+++A +I +TG+ GKTT +++ + Sbjct: 82 VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWID--LVGSKA 139 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183 G L + L +S G I+ + Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALS 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V T ++ HL +EE A+AK +F + + D K ++AL Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTEHQCGHAVINVDDVVGAAWAKQLNNALA 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + +E + + IG A N+++ + Sbjct: 260 VSLKPT--TEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTL 317 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + P GR + ++ N + +A L + Sbjct: 318 LSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVVDYAHTPDA-------LEKALQAL 370 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414 H G A+ G G + + ++ V L+ + + + Sbjct: 371 RVHCHGELWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEEPALIMKDM 426 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + D++++ K Sbjct: 427 LAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465 >gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens 200] Length = 500 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 82/487 (16%), Positives = 152/487 (31%), Gaps = 54/487 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL N +++DSR+I + F A+ G DG FI A+ Sbjct: 1 MMLLRDLL----APWFIYSGDQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDL 56 Query: 64 GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNK----LAVAARLRSKAT 109 GA V+V+TD G + I F ++ + A+ LA + Sbjct: 57 GAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLG 116 Query: 110 IIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG----- 163 II ITG+ GKT+T +++ ++S+ +K N G + D Sbjct: 117 IIGITGTNGKTSTSQLIAQLVTSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 176 Query: 164 --------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + + +S G ++ V +AV T + HL +E +AK +F Sbjct: 177 EFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR 236 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + D L +S + A F + + + + Sbjct: 237 FSTLGHGLLNLDDPVGETWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDDQGVSATLV 296 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 ++ +G N+L L + + D++ + + P GR +R+ A N Sbjct: 297 WPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERFTTADN 356 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + +A L+ + H G V G G L Sbjct: 357 ITLVVDYAHTPDA-------IEQALTALRRHCAGDLWCVFG----CGGDRDKGKRPLMGR 405 Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + + ++ + + L + GD+ Sbjct: 406 AAEQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDL 465 Query: 447 VVV--KS 451 +++ K Sbjct: 466 ILLAGKG 472 >gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis RP62A] gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis RP62A] gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU028] gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU045] Length = 494 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 153/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H F + V +G Sbjct: 1 MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 G+VVVN ++ ++ V D L + LA + T +TG+ GKT+ Sbjct: 61 CGIVVVNRELELK---GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G + A F + K+ + E S V + Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V +++ I A++ P EGR L+ + Y Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458 >gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] Length = 474 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 82/479 (17%), Positives = 158/479 (32%), Gaps = 64/479 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P T L + V G+S +S++I +AFFAIK +G+DFI A Sbjct: 1 MTP--TLKQL-----------FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADA 43 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 ++KGA LV+ + + + V V+D+ L++ + T+IA+TG+ GK+ Sbjct: 44 LEKGAALVITD-----DKKNTTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKS 98 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE--- 166 + + S I + A IG+ + G+ T + + + Sbjct: 99 SVVSYIAQIYSLIGQKAASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGI 158 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 S G + ++ ++A T+ + HL E AK ++F Sbjct: 159 DYLAFEASSHGLDQQRLGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDG 218 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I + D G + N + + K+ + Sbjct: 219 IAILNSDIEEIKFIKDYLDKHKIKYLCVGANGNCKITKTNSSL--KGQNINFIFDNKNYD 276 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG A N+L+ V + D I AL+ +GR +R + Sbjct: 277 FDTPIIGSFQASNLLIAGLSVYYTSFDFSKVINALTKVKAVKGRMERVNRTNIFIDYAHT 336 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++ +K G+ + G G + L ++ Sbjct: 337 PDALEKALTELKNI--------KAKGGKLSVIFG----CGGNRDTTKRKLMGKIAASIAD 384 Query: 403 HVWLSG-----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +V ++ A++ + I + + ++L D++++ K Sbjct: 385 NVIVTDDNPRHEDPKAIRQEIISGIVTTNYIEIADRKEAIKYGINNLKKDDILLIAGKG 443 >gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Proteus mirabilis HI4320] gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Proteus mirabilis ATCC 29906] gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Proteus mirabilis HI4320] gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Proteus mirabilis ATCC 29906] Length = 495 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 138/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL A+ P + +++DSR A + F AIKG DG +I A+ +G Sbjct: 5 NLSDLLGALGIQ----APSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + +A+ G + IPV ++++ L+KLA + + I + Sbjct: 61 CAVLAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFYHQPANKLKLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAQGLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGATFT 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + +V T ++ HL + AK +F I Sbjct: 181 AMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFSTHHSGEKIIN 240 Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D + L A+ + Q + + + E+ Sbjct: 241 ADDAVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L L + L +D IKA S P GR + + Sbjct: 301 SPLMGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNRPTVIVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ + G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCIFG----CGGDRDKGKRPLMGAVAEQFADKV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L E + D+++V K Sbjct: 410 VITDDNPRSEEPQAIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKG 467 >gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 550 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 43/456 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V ++ D+R + P F A+ G H DGHD + A+ KGA ++V + + +++ Sbjct: 79 DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 133 Query: 84 PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V++ A+ LA K +I +TG+ GKTT ++ ++ IG Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193 Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + I D + +S + + + IA Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253 Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V T + HL + + + + + + + Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + +FG +A + + S + ++ + G V IG NML Sbjct: 314 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 373 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D IK+L +GR + + + ++ L I Sbjct: 374 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 426 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417 V+G G+ ++ +A++ ++ ++ S + + A Sbjct: 427 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 483 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E + GDVV++ K Sbjct: 484 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 519 >gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] Length = 508 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 158/481 (32%), Gaps = 57/481 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ I+G ++G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ + Sbjct: 14 QDLIKHIKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + DM S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDM--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L I + G + V + I Sbjct: 127 YYIYLLLKKKGIKVGFISTVFLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ +AK +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +F + + K+ KS ADF + + + + E +G Sbjct: 244 GFGVINFDDPYYSDFKNAVKKSFTYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKYSAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VSLLGSFNVENIMAALILVSQILNSDIQDIV-DKLICIKSLDGRMDSVNLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQIADNYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 L + + + + + + S GD+VVV K Sbjct: 414 ILCDEDPRGENGMCIIKDIAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGK 473 Query: 451 S 451 Sbjct: 474 G 474 >gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] Length = 495 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 79/484 (16%), Positives = 152/484 (31%), Gaps = 50/484 (10%) Query: 1 MNPLWTFHDL----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 MN +L L+ + + +DSR I + F AI+G DG F Sbjct: 1 MNTHTALSELIAPWLELTDPKL----ASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQF 56 Query: 57 ILHAVQKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 I A+ +GA LV+ D G +PV + D+ L+++A + +I Sbjct: 57 IDKAIVQGANLVLAQADAEHPNGVSEYRQQVPVIYLADLGTHLSEMAGRLYGDHQNQLIG 116 Query: 113 ITGSVGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD----- 161 +TG+ GKTT +++ L ++ T T + + Sbjct: 117 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLSALEPAANTTGNALQIQATLRDLA 176 Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 L S G ++ + V + ++ HL +E A+AK +F Sbjct: 177 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 236 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 I D + +K A+G+ + G ++ + + + Sbjct: 237 CQNAIINVDDAVGAQWVKQLPQAIGVSLVTKPGTAQAIWARQ--VEYAESGITLNFDSSW 294 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 E+ IG A N+L+ L + L + + + P GR + ++ Sbjct: 295 GEGELHAPLIGEFNACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQKAKM 354 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + +A L + H G+ A++G G + ++ Sbjct: 355 VVDYAHTPDA-------LEKALRALRVHCAGQLWAIVG----CGGDRDRGKRPMMAAIAE 403 Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V L+ + + L H + D++++ Sbjct: 404 QFADRVILTDDNPRSESPQAIVADMVAGLNHPELAHIEHNRFQAASYALQQAGAQDIILL 463 Query: 450 --KS 451 K Sbjct: 464 AGKG 467 >gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I + F A +G + DG +I A+ GA V + D +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFEWNPEWEVPNQGIKDL 88 Query: 92 LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V + T + Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSTIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D+ EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ Q +G AQN+ + ++ +D + Sbjct: 269 ADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A++ L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRATAIRYAVERAASSDIILIAGKG 464 >gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] Length = 490 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 90/485 (18%), Positives = 155/485 (31%), Gaps = 57/485 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL+ ++ + G+S S + + F KG +D H+ I ++KGA Sbjct: 9 NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS------------------K 107 VVV ++ L P V D K+A Sbjct: 64 VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTT 118 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 I + S+G+ + + Y I + + + F E+ Sbjct: 119 VMIYHMLTSLGEKGSVLTTAVKRILENSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S ++ VR + + T I+ HL E AK +F+ L+ G LN Sbjct: 179 --SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN- 235 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 E L + +FG SKNAD++L + E + ++ + V Sbjct: 236 -----ESLADTFNRKS--RKITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKA 288 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N + + L D +L F EGR + R A G ++D +++ Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHS 348 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +L + +GR I V G G S + ++ V L+ Sbjct: 349 PDALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLADVVILT 399 Query: 408 -----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G + L + + + GD VV+ Y Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERY 458 Query: 459 RLINL 463 ++I+ Sbjct: 459 QIIDE 463 >gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL F2-515] Length = 242 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 21/220 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA I+ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 ++ + + IG+ IG + + + E + Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +S ++ + +AV ++ HL +EE A+ Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAN 215 >gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris DP4] gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio vulgaris DP4] Length = 486 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 76/452 (16%), Positives = 141/452 (31%), Gaps = 44/452 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR + P + F A+ G DG FI AV +GA +VV D + + + V D Sbjct: 22 IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFAVAVHD 81 Query: 90 DVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL L A ++ +TG+ GKTT +L +S + +G+ + Sbjct: 82 DPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTVSYRW 141 Query: 148 -----GVPLTLARMPVDVDFG---------IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 PLT + + + +S + +R AV+T + Sbjct: 142 PGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVLTNLT 201 Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSF 250 HL +E +AKA +F E + +N DD + L A T Sbjct: 202 QDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGFALTGAPV 261 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +++ ++ + M + + ++ G + +G+ L+ Sbjct: 262 SGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGLSPAD 321 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 ++ + + R R + ++ +++ Sbjct: 322 FVHLENFTGVPGRLERITNDRGLDVFVDYAHTPDALVNVLRALRDVGFTR---------- 371 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421 + V G G L + L+ + + +K L + Sbjct: 372 IVTVFG----CGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGA 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L GD ++V K Sbjct: 428 REVVAEADRRKAIALALEMLRPGDALLVAGKG 459 >gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium DSM 319] gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium DSM 319] Length = 469 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 190/459 (41%), Gaps = 30/459 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDS--RSIAPQEAFF-----AIKGPHYDGHDFI 57 +T +++L+ G + +I+ + I F I+G + Sbjct: 4 FTLNEILKQTGGDLCYGSGNPVIKH-AINYAKKDIEDHTLIFHLDREPIRG------KYW 56 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + +V+ + + + +I + + A K R +I +TG+ Sbjct: 57 KE---NHSIVVITDHPELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTC 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ L K A S N+ L + + +FE+ +++ G ++ Sbjct: 114 GKTTTKEMIRQILIEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEMPVAYPGYLKV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +P I ++ I HL++ EE AKAEI EGL+ I + D E +K Sbjct: 174 ACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADD--ENIKR 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ + GK+ ++ FQ + K ++ ++ Q + G G H N L Sbjct: 232 VLDVSHLQNVVYIGKNDSSQFQAKDIKYANKGMAFTLKYQNTEYDAFIPGYGEHNVYNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V + D+ AI+ LS+F E T+I++++N++P SM A+ Sbjct: 292 AAIAAVFYVGIDISVAIQRLSLFEQVEE---HLEFKRGMNECTVINDTWNSSPLSMATAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 VLS +S + IA+LG M ++GE + + D+ + + I + + G A+ Sbjct: 349 GVLSDMSKEKQS--IALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGEEAKAIG 406 Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + V++ +T D ++ + L + ++++K Sbjct: 407 TGALKCGMDPNKVYFCKTGDEVYNVLAPYLNENTIILLK 445 >gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] Length = 479 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 136/474 (28%), Gaps = 49/474 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + + +DSR + AF A+KG DG+ +I + K Sbjct: 1 MKNINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G LV+ ++ VF + ++ L+ LA K II ITG+ GKT+ Sbjct: 60 GVSLVLTDSHQFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + E+ Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + +A+ + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + + K K + Sbjct: 229 INIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L P +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + + ++ S + ++ Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +K + + + F + GD++++ K Sbjct: 398 DNNRFESIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKG 451 >gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis F0421] gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis F0421] Length = 564 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 57/478 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+ I DSR + FFA G H DG +I A+ GA +V ++ + + + Sbjct: 61 DTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQNELPSY--AAGV 118 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V +V ++ +I +TG+ GK++T + L K Sbjct: 119 CYVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLLRLAHKRAGFFS 178 Query: 142 SYNNHIG---VPLTLARM---------------PVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + +G +P + +F + E L + + V Sbjct: 179 TVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGLSPLTARLNDVC 238 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KA 237 + + HL E+ KA +F L++ I F ++ Sbjct: 239 FDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVPSFGVVNADDPSAE 298 Query: 238 KSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 +A + YSF K++ K+ S ++ GKS + Sbjct: 299 YFYAATKQPCYSFSVNTAKKTAFLKNELQGVIAVNIKEDSNGIQFDIFESGKSESIHARA 358 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + + ++++ + + + + E R F ++ + Y Sbjct: 359 PLAGLFNVQNLCASLLTVSSILQKPLAELIPLLQKLEPITGRMCKIQEGQPFEVLID-YA 417 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P+S + + + G+ I V G G + ++ + L+ Sbjct: 418 HTPSSFQMLMPPIKDRIAKQGGKLIVVFGS----GGERDTKKRPEQGRIAAAYCDVIILA 473 Query: 408 GFHVLA---------LKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + P + S D V++ K Sbjct: 474 DEDPRGEDPVALLEMIAAGAPHKKLDSELFIIPDRKAAIRKAFSLANPHDAVLLLGKG 531 >gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alistipes sp. HGB5] Length = 485 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 96/474 (20%), Positives = 167/474 (35%), Gaps = 44/474 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T +LL+ ++ V G+ DSR++ P + FFA++G DGHDFI AV K Sbjct: 1 MKTLKELLRNTPVTALHGDDSAAVAGLVYDSRAVGPGDCFFAVRGTQNDGHDFIPAAVAK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA VV + + + V D GAL +A A ++ ITG+ GKTT Sbjct: 61 GAAAVVCER--LPEQTAADVVYVAVPDAAGALADMAAAFYDHPSRALKLVGITGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167 T +L + ++ I + +G + R D + Sbjct: 119 TVTLLYDLVRALGHKAGLISTVVYKVGERTVGATHTTPDPVRLNAMMREMADEGCEYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S ++ T + + + I HL E AK F+ L K N Sbjct: 179 ECSSHAIVQERTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDSLSKEAFALTNA 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A I+++ ADF+ + + + + + Q Sbjct: 239 DDKNGRVMVQNTAAA----IHTYSLRSMADFRCKIVEMHPDGMLLRIDGQEVW----VGL 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G A N+L G +L D ++A S+ HP GR + R A Y Sbjct: 291 VGRFNAYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVRSANGVTAVVD----YA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ I + +I + + G+ ++ ++A++ Y + V+ S Sbjct: 347 HTPDALENVIRTIEEIRTPAQKLIVVC----GCGGDRDRTKRPEMAQIAVRYADTAVFTS 402 Query: 408 G----FHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ L GD+++V K Sbjct: 403 DNPRHESPEAILDQMAAGLEPGARFLRIADRAEAIRTAVMLSQPGDILLVAGKG 456 >gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] Length = 490 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 144/475 (30%), Gaps = 47/475 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T LL+ ++ + +N + DSR P + F A+KG DGH FI +Q G Sbjct: 8 TLTSLLRGLKPLQVLGSTDIAINEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGI 67 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123 +VV T + + + V + AL LA A T++ +TG+ GKTTT Sbjct: 68 SALVVET--IPENVPDQVTIVQVANSAQALGFLASAFYEHPSHQLTLVGVTGTNGKTTTV 125 Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGIFELGM 169 +L S + + + N P +A V+ + + Sbjct: 126 TLLYDLFSGLGYKCGLLSTVENRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEV 185 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + A+ T I HL + AK F+ L K +N DD Sbjct: 186 SSHAVDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKKSFFDQLSKRAFALVNIDD 245 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ + A + + R + + + + + + G Sbjct: 246 KRGMVMTQNTAASVNRYSLR------QMAEFRARIIENSLTGLHLDIDNQDFYGRLIGEF 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + ++ ++ L+ + R+ ++Q Y Sbjct: 300 NAYNLLAVYATAVLLE-----QDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDYAHT 354 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +++ + + + V G ++ V L+ Sbjct: 355 PDALEKVLETIQALRKADAKVLTVV-----GCGGDRDRTKRPTMAKVACQYSDQVILTSD 409 Query: 410 H---------VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ +P V GDVV+V K Sbjct: 410 NPRSEEPEAIIREMEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKG 464 >gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50] gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50] Length = 499 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 156/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ +Q I + I DSR + Q FF I G ++DGH ++ + + KG Sbjct: 1 MKARELLKGLQYSVICGDEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYVKNVIDKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +VV D+ G + + VD A+ ++ K T+I ITG+ GKTTT Sbjct: 61 AVCLVVQKDVEPVPG---VLIVKVDSTRYAMGIVSSNFYGNPSSKLTVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 M+ L S IG+ G +T A + + + Sbjct: 118 TYMIREMLMSAGHKTGLIGTIEIIDGNNVTAANNTTPESMIVHKKLKDMVDNGLDSVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226 +S G + V + + ++ H+ EE A K+++ T+ Sbjct: 178 VSSQGLMLDRVAGVDFDYGIFSNLSRDHIGPNEHKTFEEYAMWKSKL-------FTMCKI 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + I ++G + + D++ ++ + + Sbjct: 231 GIFNADDPHVDTMTEHATCKIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSGKLDGDV 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + ++ +L + + + R FT++ + Y Sbjct: 291 LVNLPGNFSIYNSL-AAIAVADLMGVPFDKIQEILKTIKVKGRVELIPISDKFTIMID-Y 348 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 N S+ + + L + P ++ G S+ ++ EV + Sbjct: 349 AHNAVSLMSILETLREYKPKR------LVSLFGCGGNRSKERRYEMGEVSGNMADLTIIT 402 Query: 407 SG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 S + + + I+ Y E + + GDV+V+ K Sbjct: 403 SDNPRFEEPQDIINDIKTGINKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKG 458 >gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 499 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 85/466 (18%), Positives = 155/466 (33%), Gaps = 48/466 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L ++ I V GI+ID R I + F A+ G H DG DF AV++GA Sbjct: 30 TLDALGALVEHARIVGDRATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGA 89 Query: 66 GLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 V+ ++ +P V + A+ ++A S ++I +TG+ GKTT Sbjct: 90 VAVLT----AGQPVAVGVPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTT 145 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL-----TLARMPVDVDFGIFELGMSHLGEIR 176 T +++ L + + +G+ + + P D + +S + Sbjct: 146 TVSVVSQLLERLGEGVGVLGTLWSRLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAM 205 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + V T ++ HL +E+ +AKA +FE E+T +N DD + L Sbjct: 206 ERIEGLHVRVGVFTNLSQDHLDFHGSMEDYFAAKARLFE-PERTAIGVINVDDPWGARLA 264 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 A + S D +++ + N+ Sbjct: 265 ASVRVPVVPVSISAVTDIEIDAAGIRFR----------------RNGRWYRSRLVGEHNL 308 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L VS+L V E R + L ++D +++ + AA Sbjct: 309 RNILLAVSVLEQVGFDPDLLRGVLGEVESPRGRMQRILGPRGLVVVDYAHSPDAL---AA 365 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410 + +++ GR + V G G L ++ ++ + Sbjct: 366 VLRAARLLVGPRGRLLVVFGA----GGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDP 421 Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + GDV+VV K Sbjct: 422 AAIAAQIVAGWRDRRGVRVVLDRRAAIEEAVAMMAPGDVLVVAGKG 467 >gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] Length = 508 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 82/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G + G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ + Sbjct: 14 QDLIKCVKGSL-----DLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + D+ S + VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDL--DFYSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L I + G + +V + I Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V AV T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + K+ KS ADF + + ++ + E +G Sbjct: 244 GFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VNLLGSFNVENVMAALILVSQILNIDIQDIV-DKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium urealyticum DSM 7109] gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium urealyticum DSM 7109] Length = 533 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 84/513 (16%), Positives = 153/513 (29%), Gaps = 61/513 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L G V+ +I S + P F A+ G G F A GA Sbjct: 18 TLRELAALTGGTVAATHQDVTVDSAAIGSADVQPGGLFCAVPGSRVHGATF---AADSGA 74 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 V+ + + + +P+ VDDV + +A A II ITG+ GKTTT Sbjct: 75 AAVLTDAEGAEILADADLPLLVVDDVRRWMGPVAAAVYGHPSRDLRIIGITGTSGKTTTT 134 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE--LGMS 170 ++ AL + + G P A + D G+ + +S Sbjct: 135 YLIERALMAKHSVGIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVS 194 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + +A T ++ HL +E+ KA++F + G Sbjct: 195 SHALALGRVTGIDFDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVC 254 Query: 231 FFELLKAK---SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + A + G +K + + + + E + Sbjct: 255 VDDDWGQRLAGMIADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYD 314 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG + N+ +L +S +T + A + + G+ Q F ++D ++ Sbjct: 315 IGLVGSFNVANSLLAISCVTQLGEDPQAAAAAIADVQVPGRMQAVDAGQPFLAVVDYAHK 374 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + + LS P GR VLG G + + V+++ Sbjct: 375 PGAVAA--VVRTLSDYLPSPTGRIGIVLGA----GGNRDHDKRPMMGEEAAKVADAVFVT 428 Query: 408 GFHV----------------LALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVV 448 + +A + + + + GD +V Sbjct: 429 DDNPRDEEPAPIRSMILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIV 488 Query: 449 V--KSSNSCG------------FYRLINLLLEE 467 V K + G L L + Sbjct: 489 VAGKG-HETGQEVRGEIHPFADLEELAAALEQR 520 >gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris RCH1] Length = 486 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 76/452 (16%), Positives = 140/452 (30%), Gaps = 44/452 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I DSR + P + F A+ G DG FI AV +GA +VV D + + + V D Sbjct: 22 IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFAVAVHD 81 Query: 90 DVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL L A ++ +TG+ GKTT +L +S + +G+ + Sbjct: 82 DPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTVSYRW 141 Query: 148 G-----VPLTLARMPVDVDFG---------IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 PLT + + + +S + +R AV+T + Sbjct: 142 PGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVLTNLT 201 Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSF 250 HL +E +AKA +F E +N DD + L A T Sbjct: 202 QDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGFALTGAPV 261 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 +++ ++ + M + + ++ G + +G+ L+ Sbjct: 262 SGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGLSPAD 321 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 ++ + + R R + ++ +++ Sbjct: 322 FVHLENFTGVPGRLERITNDRGLDVFVDYAHTPDALVNVLRALRDVGFTR---------- 371 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421 + V G G L + L+ + + +K L + Sbjct: 372 IVTVFG----CGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGA 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L GD ++V K Sbjct: 428 REVVAEADRRKAIALALEMLRPGDALLVAGKG 459 >gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 90/485 (18%), Positives = 147/485 (30%), Gaps = 52/485 (10%) Query: 7 FHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D+L+ I G ++ V G+ +DSR + + F A G G FI AV +G Sbjct: 20 LGDVLREIPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIPEAVARG 79 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V+V A L V DV A V ++ ITG+ GKTTT Sbjct: 80 ARAVIVARGSAADT--LGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVGITGTNGKTTT 137 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ + +G+ G + A + + E Sbjct: 138 AHLVQACIDRCGGQAGIVGTLGYRFGDLDVHASHTSPEADELARVAAAMVARGATHLVME 197 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + VR IAV T + HL +E A+AKA +F G +N Sbjct: 198 V--SSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARLFV-DLGPGAAVIN 254 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--------KQCSEQSWMEVQLQG 278 DD F L G+ + ++ + + S ++ + Sbjct: 255 VDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVELAHSASGTFIRART 314 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + EV + + D A ++ P + G+ RC Sbjct: 315 PAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPIQVAGRLERCDAPGAD 374 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 ++ Y P ++ VL+ + G GR + V G G Sbjct: 375 DVIVLVDYAHTPDAL---ARVLASVRALGGGRVLCVFG----CGGDRDPLKRPQMGEAVG 427 Query: 399 YNISHVWLS-----GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVV 448 ++ A+ DA+ V GDVV+ Sbjct: 428 RVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAVLDAEPGDVVL 487 Query: 449 V--KS 451 + K Sbjct: 488 IAGKG 492 >gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] Length = 494 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 153/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ + V I+ DSR+ F A KG D H F + V +G Sbjct: 1 MNASVLFEKIRVKQVIGTLDKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 ++VVN + + V D L + LA ++ +TG+ GKT+ Sbjct: 61 CSIIVVNREQDLKGE---VTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + + + + + + E + Sbjct: 118 ATMIHLIYRKLNKSSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G +A F+ ++ + E S +V + Sbjct: 238 LNNDDDFSEYLASVTPYEVFTYGIDHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V A + I+A+ P EGR + L + + Sbjct: 298 GKFNISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEGRLEVLDPNLPIDLIIDYAHTADG 357 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ + P + + I ++G M GE + ++ V + +V + Sbjct: 358 -------MNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVA--CHADYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y E GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHSNYIEFEDRAEGIKHAIDVAEPGDTVVL-ASKG 458 >gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia rohdei ATCC 43380] gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia rohdei ATCC 43380] Length = 471 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 68/453 (15%), Positives = 129/453 (28%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86 ++DSR A + F AI G DG +I A+ +G VV D VA S +PV Sbjct: 2 TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + ++ L+ LA + A + + + T +A S Sbjct: 62 YLRNLNQHLSTLAGQFYHQPGAALSLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121 Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ + + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F + I D L A+ + + Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQAEHKIINADDAVGRRWLSQLPQAVAVSMEGNI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + R+ + + ++ +G N+L+ L + L Sbjct: 242 PTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A P GR + + + +A L+ H +G Sbjct: 302 LTQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + DVV++ K Sbjct: 411 AGRAQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443 >gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida GB-1] gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1] Length = 496 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 69/457 (15%), Positives = 142/457 (31%), Gaps = 37/457 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ P + F A+ G DG + I A+ +GA V + + Sbjct: 16 DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAVAYEEQGATVLPLTEV 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V ++ L+ +A ++ +TG+ GKT+ +++ AL + + IG Sbjct: 76 PLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R+ + + +S + + IA Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHALEQGRVAALEFDIA 195 Query: 188 VITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 V+T ++ HL +E A AK + L + A+ ++ Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNLDDAFGRRLAADFARRPSVDHI 255 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 S ++ + + N+ L V+ Sbjct: 256 DTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRSQLLGRFNLSNMLAAVAT 315 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L A + L V G R + ++ + + A VL + P Sbjct: 316 LLALDYALDEILKVTPQLHGPVGRMQRLGGGDKPLVVVDYAHTPDA----LEKVLEALRP 371 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 H G+ + + G G L ++ V ++ + ++ Sbjct: 372 HAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQRIFDDIRP 427 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R + V + + +S DV+V+ K Sbjct: 428 GFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKG 464 >gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase-like protein [polymorphum gilvum SL003B-26A1] gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative-like protein [Polymorphum gilvum SL003B-26A1] Length = 489 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 86/470 (18%), Positives = 151/470 (32%), Gaps = 38/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + P V+G++ DSR + P F A++G DG F+ A+++GA Sbjct: 3 LDSLAADLG--LPHPPPTLSVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAV 60 Query: 67 LVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+ + A++ S+PV D AL +A R T++A+TG+ GKT+ Sbjct: 61 AVLTDAQGAAALAGTMPDSVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVA 120 Query: 124 EMLTIALSSIKK-------TYACIGSYNNHIGVPLT-----LARMPVDVDFGIFE--LGM 169 + + G+ A + D GI L Sbjct: 121 HFVRQIFEHAGHASASLGTIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEA 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + VR T + H+ + E+ AK +F L G + Sbjct: 181 SSHGLEQHRLDGVRLVAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPG 240 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 I++ G+ + AD +L + + V+ ++ G Sbjct: 241 ERCADRVLAVARERGLHIFTVGE-RGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAG 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L+ G+ ++AL GR + N +D ++ + Sbjct: 300 RFQVSNALIAAGLAITAGEATGAVLRALEDLEGAPGRLELVGRKANGA-LVFVDYAHKPD 358 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 + L+ + P GR V+G G L + + V ++ Sbjct: 359 ALE-----NALAALRPFTCGRLFVVIGA----GGDRDPGKRPLMGAAAARHADVVIVTDD 409 Query: 409 ----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A L + + L GDV+ V K Sbjct: 410 NPRSEDPAAIRKAVLAGAPDALEIGDRGAAIAEAVARLEAGDVLCVAGKG 459 >gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Citrobacter rodentium ICC168] gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Citrobacter rodentium ICC168] Length = 495 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+KG DG +I A+ +G Sbjct: 5 NLRDLL----APWVTGLPARELREMTLDSRVAASGDLFVAVKGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSENMRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLVAQGATFG 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G I+ ++ V T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHHYGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLTNLPDAVAVSMEDHINPNCHGRWLKAVAVDYHDSGATIRFTSSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVCGRMEVFSAPGKTTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCGGQLWCVFG----CGGDRDKGKRPLMGAIAEQYADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKG 467 >gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC 2396] gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC 2396] Length = 508 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 70/474 (14%), Positives = 140/474 (29%), Gaps = 44/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ + +++ I DSR + F A +G +G ++ A+ +GA Sbjct: 9 LAELLK--GIAEVPAALDCWLSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALARGAR 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKE 124 V++ + + +V + +A + + ++ +TG+ GK++ Sbjct: 67 AVLLPGTRQHVYEKGDVVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGTNGKSSVTH 126 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELG 168 + + + A +G+ G P +L + + Sbjct: 127 YVAQMAEGLGMSAAVVGTLG--YGRPDSLKATTHTTPDAVSLHRVLAELRDEGIELVAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + V +AV+T I HL +E A AK +F +F D Sbjct: 185 VSSHALDQDRAAGVNFDVAVLTNITRDHLDYHGTLEAYAEAKKRLFLSDSVRWKVFNQDD 244 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + AD ++ + L + Sbjct: 245 PYGARWAQELQGPKTLTFSIGKQDQTAADVCAEDIHFDADGMSFALDLGATREPARLALV 304 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L +S L + + L+ P GR R ++ L+D ++ Sbjct: 305 GEFNLSNALAACAAMSALKVEPQAVRQQLARLTPVAGR--MQRLHEDKAPTVLVDYAHTP 362 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + + L H GR V G G L ++ V L+ Sbjct: 363 DALEV-----ALKAARRHCPGRLWCVFG----CGGDRDPGKRPLMGAVAAQYADEVVLTD 413 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + H + F DV+++ K Sbjct: 414 DNPRGEDPESIVAQIVKGAEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKG 467 >gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus asymbiotica] Length = 495 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 79/478 (16%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 LL + P+ + +++DSR A + F AIKG DG +I A+ +G Sbjct: 5 NLRSLLAPLGI----DAPECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 V+ A G++ +PV V D+ L++LA + +I +TG+ GK Sbjct: 61 AAVIAEAQGEADSGTVQVIHGVPVVYVSDLNNKLSQLAGQFYHHPGGQLRLIGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWAHGLGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFA 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + +AV T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQGRVAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD + L A+ + ++ + + K + + + + Sbjct: 241 ADDDVGQKWLSRLPQAVAVTMENRLPENWQGRWLSASEIKYHDKGVSVTFESSWGGGTID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + ++ S P GR + + Sbjct: 301 SPLMGAFNVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVFNAPDKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +GR V G G L ++ +V Sbjct: 361 TPDA-------LEKALLAARLHCKGRLWCVFG----CGGDRDKGKRSLMGSVAEQWADYV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + DVV+V K Sbjct: 410 ITTDDNPRSEEPQAIVDDILTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKG 467 >gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 502 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 78/451 (17%), Positives = 134/451 (29%), Gaps = 37/451 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLSI 83 G++ DSR + P + F A G DG +I A+ GA V T A + + Sbjct: 29 GVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQV 88 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY---- 137 V + LA A R ++IA+TG+ GKT+ + + Sbjct: 89 ANLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPRRCAVIGTLG 148 Query: 138 --ACIGSYNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 P M D L S +G R +AV T Sbjct: 149 AGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVAVFT 208 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIY 248 + HL + + A AKA + + N DD F L A S A + T Sbjct: 209 NLTRDHLDYHATMAAYAQAKARL-FAWPRLRLAVSNLDDPFGRELAALSTATKVIGYTQQ 267 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + + + ++ + + G N+ L + ++L Sbjct: 268 AGADDRQGTIRAENIEETIDGLRFRLCAPNGRA---LVESGLLGRYNVSNLLAVAAVLID 324 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 T F R +I + Y P ++++A+ L ++ Sbjct: 325 AGLTPKAVAERFAQLSSPPGRLEKIGGHNEPLVIVD-YAHTPDALESALMALRPVANARG 383 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422 + + G G L ++ + V L+ + + L D L + Sbjct: 384 AGLVVIFG----CGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAP 439 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + DVV++ K Sbjct: 440 TALVIADRGEAIRRTLLAAHPADVVLIAGKG 470 >gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcus flavefaciens FD-1] Length = 479 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 79/458 (17%), Positives = 143/458 (31%), Gaps = 55/458 (12%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + I+ D+R +A F +KG +DGH ++KGA VV D+ L Sbjct: 17 NIEITSITDDTRKVAEGCLFVCVKGGSFDGHTAAAEMLEKGAAAVVCEHDL-----GLGD 71 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 D+ + A K +I +TG+ GKTT ++ L +G Sbjct: 72 RQILTDNSRRLYGMMCSAWFGHPEKKLHMIGVTGTNGKTTITNVIKHILMKNGHKTGLVG 131 Query: 142 SYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + N IG + + ++ + E+ S G ++ Sbjct: 132 TIQNEIGDEIVHTENTTPMAYDLMALLDRMVKAGCEYVVMEV--SSFGLVQNRIGASWFD 189 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 AV T + HL +E+ AK +F+ + + + + + Sbjct: 190 TAVFTNLTQDHLDYHKDMEDYYQAKKMLFDICD-------CALVNIDDEYGKRLYGEIGC 242 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 SF AD+ K S S GKS V G N+ + + Sbjct: 243 EKQSFSVKGCADYTADGIKIKSTGSSFWFCKGGKSHLVKCRMPGAFNVSNITAAMAVCLR 302 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 VD I A+ ++ +GR FT+I + + A ++L + Sbjct: 303 AGLSVDDIIAAVEEYNGVKGR---CEVIPTGRDFTVICDYAHTPDA----LENILRSVRE 355 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKD 416 + + R I + G G + + + ++ + + + Sbjct: 356 YTDNRLICLFG----CGGNRDAAKRPKMAAAAAKFADRLIVTSDNPRNEDPELIIKEILT 411 Query: 417 ALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L S I GD++V+ K Sbjct: 412 GLEDSDIPYDVVVDRREAIYHALKIAEKGDIIVLAGKG 449 >gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] Length = 494 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 148/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H F + +++G Sbjct: 1 MNASALFEKIRVKNVIGTLDINVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 +VVVN ++ + V D L + LA + T +TG+ GKT+ Sbjct: 61 CRIVVVNRELE---LEGDVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + + + + + E L Sbjct: 118 ATMIHLIYRKLNKSSAYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++++G A F + + + ++ V + Sbjct: 238 LNNDDDFSGYLANVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYHVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V A ++ I A++ P EGR L+ + Y Sbjct: 298 GRFNISNIMAAIIAVWSKGATMEEIINAVTSLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDMTKTPEMGSVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIRHAIDVAEPGDTVVL-ASKG 458 >gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Dickeya dadantii 3937] gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Dickeya dadantii 3937] Length = 494 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 149/472 (31%), Gaps = 42/472 (8%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+ + + P+ + +++DSR A + F A+ G DG +I A+ +G VV Sbjct: 6 LRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65 Query: 71 NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 D G+L +PV ++++ L+ LA + +I +TG+ GKTTT + Sbjct: 66 QADEATPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKTTTTQ 125 Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170 +L ++ K + N +G + +S Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS 185 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ + AV T ++ HL + +AK +F + I D+ Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAEHQVGQKIINADDEV 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L+ A+ + + + ++ + E+ +G Sbjct: 246 GRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSRLMGA 305 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L+ L + L ++ +K S P GR + + + + +A Sbjct: 306 FNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRPTVVVDYAHTPDA-- 363 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L+ H G V G G L ++ V ++ + Sbjct: 364 -----LEKALAAARLHCRGVLWCVFG----CGGDRDRGKRPLMGAIAEQLADRVIVTDDN 414 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V DVV+V K Sbjct: 415 PRSEDPQAIVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKG 466 >gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 491 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 82/472 (17%), Positives = 148/472 (31%), Gaps = 49/472 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ ++ + V + DSR + F I+G DGH F+ V KGA +++ Sbjct: 12 LLEKLEYTCLQGSTDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFVPDVVAKGAKVLI 71 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLT 127 V + A + V V D A+ ++ A K I ITG+ GKTTT M+ Sbjct: 72 VEEAVEA---PEDVTVILVKDTRYAMAFISAAYFGYPAEKLKTIGITGTKGKTTTTYMVK 128 Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171 L + IG+ IG D + E+ S Sbjct: 129 SILENAGYKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEMAEAGCDCVVMEV--SS 186 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 G + T + T I P H+ + + Sbjct: 187 QGLMLHRTQGFVFDFGIFTNIEPDHIGP-----NEHKDFDDYLRCKSLLLKQCKVGIVNR 241 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + K ++ ++G S AD + K + ++ + K + H I Sbjct: 242 DDEHFEKIIEGHTCSLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKGLLDFHVEIDIP 301 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 ++ +L ++I + L R FTL+ + Y N Sbjct: 302 GKFSIYNSLTAIAICRHFKVSEENILKALK-VAKVKGRIEMVKVSDDFTLMID-YAHNAM 359 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407 ++++ ++ L + PH ++ G S+ ++ EV + S Sbjct: 360 ALESLLTTLKEYHPHR------LVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITSDNPR 413 Query: 408 GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + +V + GD++V+ K Sbjct: 414 DEEPQAIIDDIKIGMAKTDGKYVEI-PDRKEAIAYAIHHGEPGDIIVLAGKG 464 >gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus nematophila ATCC 19061] gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus nematophila ATCC 19061] Length = 495 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL +P+ + +++DSR A + F A++G DG +I A+ +G Sbjct: 5 NLRDLL----ALWGIDIPELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ A G++ +PV +DD+ L+KLA + + + Sbjct: 61 AAVIAEAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + + Sbjct: 121 TTTTQLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLVNQKATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G I+ + V T ++ HL ++ +AK +F + I Sbjct: 181 AMEVSSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHDVKQKIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVV 284 D + L A+ + ++ + L + + + S + Sbjct: 241 ADDAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSCWGSGTLN 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L ++ + S P GR + + Sbjct: 301 SPLMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGRPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A LS H +G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALSAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGVAELGADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + DV++V K Sbjct: 410 IVTDDNPRSEEPHSIVADILKGFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKG 467 >gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. Sakai] gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4113] gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4401] gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4501] gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4486] gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4196] gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4076] gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC869] gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC508] gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4024] gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4206] gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4045] gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4042] gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4115] gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14588] gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14359] gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. FRIK966] gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4196] gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4113] gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4076] gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4401] gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4486] gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4501] gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC869] gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC508] gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4206] gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4045] gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4042] gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4115] gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14588] gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. TW14359] gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. EC1212] gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. G5101] gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H- str. 493-89] gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H- str. H 2687] gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. 1125] gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. 1044] Length = 495 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] Length = 495 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 75/473 (15%), Positives = 151/473 (31%), Gaps = 49/473 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + + + V G+S+ S + P + + A+ G G +F+ AV++GA Sbjct: 15 LAALARLLSVPVDAEPGRVEVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ ++ V + +P D A ++ A + ++I ITG+ GKT+T Sbjct: 75 AVLSDSWGVEAAVEHGLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFELG 168 ++ L + + IG+ IG + V + E+ Sbjct: 135 LVEAGLKAAGRVTGLIGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEV- 193 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + + T HL ++E +AKA++F+G + + + Sbjct: 194 SSHALTLHRAEGIS-FAVGGFTMFGLDHLDFHPTVDEYFAAKAKLFDGRCRVEVVNAD-- 250 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + T + + + V Sbjct: 251 ----DAWAKRLVTPDTVTYSLVDANATWSVDSITGSGFDQSFEVTSPHGRHHGSVRLP-- 304 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L+ G ++ + V+TAI ++ GR +++ Y Sbjct: 305 GRHNIANALLAYGCLTAVGVPVETAIAGVADCAGVPGRM----ELVSEDNPVHGVVDYAH 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 P ++ A + + P G IAV+G G L + V ++ Sbjct: 361 KPDAITAVLEA---LRPITSGSLIAVIGA----GGDRDPSKRTLMGDAAARAADLVIVTD 413 Query: 409 -----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV-VV-KS 451 A++ + + + GD + ++ K Sbjct: 414 DNPRTEDPAAVRAGVLAGVGDRPHLEVADRATAIDEAVARAKPGDTIALLGKG 466 >gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] Length = 508 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 158/481 (32%), Gaps = 57/481 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ I+G ++G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ + Sbjct: 14 QDLIKHIKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + DM S ++ VD ++ ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDM--DFYSPNVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGI 164 + + L I + G + V + I Sbjct: 127 YYIYLLLKKKGIKVGFISTVFLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ +AK +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +F + A K+ KS ADF + + + + E +G Sbjct: 244 GFGVINFDDPYYADFKNAVKKSFTYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKYSAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VSLLGSFNVENIMAALILVSQILNSDIQDIV-DKLICIKSLDGRMDSVNLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 L + + + + + + S GD+VVV K Sbjct: 414 ILCDEDPRGENGMCIIKDIAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGK 473 Query: 451 S 451 Sbjct: 474 G 474 >gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] Length = 493 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 74/459 (16%), Positives = 150/459 (32%), Gaps = 46/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V+ + +DSR + P F A+ G DG FI A+++GA + V + G++ Sbjct: 22 SVLVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEI 81 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV +D + L+ +A +I +TG+ GKTT +++ L + A Sbjct: 82 IDDVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAV 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183 +G+ N G L + + L +S G + + Sbjct: 142 MGTTGN--GFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALS 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V T ++ HL +EE A+AK +F + I D+ + A + Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCERAIINVDDEVGHQW--ASQLSNA 257 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I + + ++ + S ++ IG A N+++ + Sbjct: 258 IAVSLKANTEFESAIWATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNLMLAFATL 317 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + ++ P GR + ++ + +A L + Sbjct: 318 LSLGKEKQALLETAGQLQPVLGRMELFQTEDRAKVVVDYAHTPDA-------LEKALQAL 370 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LAL 414 H EG+ A+ G G + + ++ V L+ + + Sbjct: 371 RVHCEGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDM 426 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + + D++++ K Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKG 465 >gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602] gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602] Length = 495 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 67/478 (14%), Positives = 136/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 D+L + P + + +DSR A + F A+ G DG FI A+ +G Sbjct: 5 NLRDIL----APWVSDAPAVALKDMILDSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VV G++ +PV ++D+ L++LA + + + + Sbjct: 61 AAVVAEAKGEQQHGTVCQMHGVPVVYLEDLNILLSELAGRFYQQPGKELRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLDNVIPAENTTGSAVQVQHILADLVKLGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + A T ++ HL ++ AK ++F + I Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMQSYEDAKWQLFASHQVGQKIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L +A+ + + + R + + + ++ Sbjct: 241 ADDEVGARWLAKTPNAIAVSMEDKIPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + S P GR + + Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLAQLLATASQLQPVCGRMEVFNAPGKPTAVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L+ H G V G G L ++ V Sbjct: 361 TPDA-------LEKALAAARLHCRGTLWCVFG----CGGDRDKGKRPLMGAIAEQYADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + V + DVV++ K Sbjct: 410 IVTDDNPRSEEPRAIVADILAGLLDAGRVQEIHGRAEAVTSAIMQAKEDDVVLIAGKG 467 >gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 138/457 (30%), Gaps = 40/457 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + + +DSR I P + F A+ G DG FI A+ +GA LV+ D G++S Sbjct: 23 NSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALARGANLVLAQADEQRPHGTVS 82 Query: 83 ----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------S 132 P+ + + L+ LA +IA+TG+ GKTT +++T L + Sbjct: 83 DIDSKPIIYLASLDEHLSALAGRFYADHTNRVIAVTGTNGKTTISQLITQWLELMGERAA 142 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRP 184 + T + T + V + +S G ++ + Sbjct: 143 VMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARYTAMEVSSHGLVQGRIKALPF 202 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V + ++ HL ++E A AK +F + I DD + Sbjct: 203 IAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTEHDCQQAILNV-DDPVGAQWATHQWPRLV 261 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + + IG A N+L++L + Sbjct: 262 GVSLYQQPETERCLWATSVSYSEQGIHLAFDGSWGVGHLHVALIGEFNASNLLLSLATLL 321 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + P GR + + + +A L + Sbjct: 322 SLGFSKPALLDTAAQLTPVLGRMELFSVPGKAKVVVDYAHTPDA-------LEKALCALR 374 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKD--- 416 H G+ + G G + + ++ + + + A+ Sbjct: 375 VHCLGQLWVIFG----CGGDRDTGKRPMMAAIAEQFADKIIFTDDNPRSESAHAIVQDML 430 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A H + + D++++ K Sbjct: 431 AGLSHRQAHVEHNRYQALQYALAHANADDIILLAGKG 467 >gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 495 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 140/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR + + F AIKG DG +I A+ +G Sbjct: 5 NLRDLLAPLGI----DAPVRELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ G++ +PV V+D+ L++LA + I + Sbjct: 61 AAVIAEAQGEVDNGTVQIMHGVPVVYVNDLNNKLSQLAGEFYCHPGDKLHLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ +A + Sbjct: 121 TTTTQLLAQWSHGLGETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQGRVAALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ + L A+ + ++ + R+ K + + + + Sbjct: 241 ADDEIGLKWLSRLPQAVAVTMENRLPENWQGRWLAAREIKYHDKGVSITFESSWGGGTID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L ++ ++ S P GR + + Sbjct: 301 SSLMGAFNVSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGKPVVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +G+ V G G L ++ +V Sbjct: 361 TPDA-------LEKALMAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGVAEQLADYV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + DVV++ K Sbjct: 410 IVTDDNPRNEEPQAIIADILTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKG 467 >gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] Length = 533 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 75/506 (14%), Positives = 152/506 (30%), Gaps = 72/506 (14%) Query: 7 FHDLLQ-AIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +++ + PQ V+GI +DSR I P + F A G DG +I AV Sbjct: 11 LKKIIKPLVNEQFWKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVD 70 Query: 63 KGAGLVVVNTDMVASIGS---------------------------LSIPVFGVDDVLGAL 95 GA +V+ + +I + V ++ + Sbjct: 71 GGATVVLFEQNDSETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQV 130 Query: 96 NKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153 + +A K +++ +TG+ GKT+ ++ AL ++ + + N L Sbjct: 131 SHIAARFYGNPTNKMSVVGVTGTNGKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSKLQA 190 Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLV--------------RPHIAVITTIAPAHLSN 199 I L +L + + + IAV T ++ HL Sbjct: 191 TENTTPDAIAIQRLAAEYLARKNYHMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDY 250 Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 S +E AK ++F E + D+ LL A+ + I + KN D Sbjct: 251 HSDMESYFQAKRQLFIREELEAAVINADDEYGRRLLTD--DAVACRKIAFSCEQKNEDLN 308 Query: 260 LRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 + W ++ + + S+ D Sbjct: 309 IENWIVAKNLTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDIDKW 368 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 +++ K G+ + ++D ++ + L+ + H G + Sbjct: 369 IVALNAAKAVPGRMQNFTASSKATVVVDYAHTPDA-----LDKTLTSLREHCAGELWCIF 423 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIH---VHYS 427 G G + L ++ + V ++ + + + + Y Sbjct: 424 G----CGGDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYI 479 Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451 + F D+++V K Sbjct: 480 QKRKEAIEFALKHSTPNDIILVAGKG 505 >gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 769 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 75/430 (17%), Positives = 147/430 (34%), Gaps = 35/430 (8%) Query: 5 WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + +LL + + + + GI DSR ++ + F G DGH ++ A + Sbjct: 241 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADK 300 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 +GA VV + ++ + V+D L LA A +I I G+ GKT Sbjct: 301 RGAVAVVASKEIDIEETLGCKALVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNGKT 360 Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVPL-------TLARMPVDVDFG 163 TT ++ ++ P + + Sbjct: 361 TTAYLIRAMYEAMGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEAV 420 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E S G + V IAV T + H+ E+ +AKA++F + Sbjct: 421 VME--ASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRH 478 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + + +F ++K+AD K++ ++ + VQ +E Sbjct: 479 RKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILE 538 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G H N+L + + + A ++ ++ + GR + Q F ++ Sbjct: 539 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELID--EEQAFGVIV 596 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + S +L + G R I V G E S + ++ Sbjct: 597 DYAHTPDALS-----RLLDSVRELGARRIITVFGCAGE----SDRGKRPIMTKIATDKSD 647 Query: 403 HVWLSGFHVL 412 V L+ + Sbjct: 648 VVILTSDNPK 657 >gi|144897230|emb|CAM74094.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum gryphiswaldense MSR-1] Length = 304 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 168/303 (55%) Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 +FELGM+H GE+ LT +VRPH+AVITTI H + F+ E+IA AKAEIF G+E GT+ Sbjct: 1 MFELGMNHAGELIPLTKMVRPHVAVITTIEAVHSAFFATTEDIADAKAEIFLGVEAGGTV 60 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 L D+ F L A + A GI SFG +AD ++ + + + L+ ++ Sbjct: 61 ILPRDNRHFRRLAAAAKAAGISHRQSFGSHIDADARMLDCAVDPDDTAVFALLRDHALAF 120 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N L L V L D + A ++L+ P +GRG+R+ A G +ID Sbjct: 121 RVGVPGLHWGMNALAVLLAVGALGGDAEKASQSLAAMRPPKGRGERHVVAWKGGSIEVID 180 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ESYNA+P SMKAAI+ L+ P GRRIAVLGDM E+G+ + + H LAE +L+N Sbjct: 181 ESYNASPVSMKAAIATLAAARPGKGGRRIAVLGDMLELGDSAPALHAHLAEAAALWNTDL 240 Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 V +G + L ALP + ++ L I++ + GDVVVVK S +++ Sbjct: 241 VCTAGPLMAHLHQALPATRRGIHAANSTELAGLIKTVIKPGDVVVVKGSAGSRMAQVVKA 300 Query: 464 LLE 466 LLE Sbjct: 301 LLE 303 >gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] Length = 532 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 143/474 (30%), Gaps = 45/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL + + V G+S+DSRSI P + + A+ G G F+ A GA Sbjct: 47 LADLARTAGAPVPAGAAEVLVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAV 106 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + V + +P+ V D L +A ++ ITG+ GKTTT Sbjct: 107 AVLTDPAGVERALTAGLPLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSF 166 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 +L L + + A + + +S Sbjct: 167 LLDAVLRRLGPAALVGTIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSS 226 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + R +A T ++ HL E+ +AKA +F E+ +N DD + Sbjct: 227 HALAKGRVDGARYSVAGFTNLSQDHLDFHKTFEQYFAAKASLFT-PERCDLAVVNIDDKY 285 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L A++ + + + + ++++ G+++ V G Sbjct: 286 GRRLAAQTVVPLVTVSTTRDADW---TVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDF 342 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L+ + ++ + D L R ++D ++ + Sbjct: 343 NVANALLAVAMLRQVDVPADEIAAGLRTARVPGRMETFLRPDG---LAVIVDFAHTPDAV 399 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407 + L +GR AV+G G + V ++ Sbjct: 400 EL-----ALRAARGATKGRLYAVVG----CGGDRDPGKRPAMGAAAARAADTVIVTDDNP 450 Query: 408 -GFHVLAL-------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G + A + + GD VVV K Sbjct: 451 RGEDPATIRAAAVEGARAAVPDVELREVGDRRAAIRTAIELAGPGDTVVVLGKG 504 >gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] Length = 483 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 69/454 (15%), Positives = 147/454 (32%), Gaps = 46/454 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GI DSR I F A++G DGH++I AV+ GA ++V+ + A + Sbjct: 19 EEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIEAVFP---V 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + D+ L LA + + I + T I A IG+ Sbjct: 76 KYIWIKDLRRKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSDKTARIGTV 135 Query: 144 NNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 IG V + + +++ + E+ SH + + ++ ++ Sbjct: 136 EYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEV-SSHALALGRV-DMLEFDVS 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T + HL +E+ AK ++F ++K + Sbjct: 194 MFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG----KRLSSEFGG 249 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S+G + + + + +E+ + S ++ +G + N+L L I +L Sbjct: 250 ISYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNVLGALSIALLLG 309 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + D + + GR + C + + A ++L I+ Sbjct: 310 IERDIILDKIKELKGAPGRYELVNCGQDFTVIVDYSHT-------GDALENILKSINELK 362 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI 422 +G+ I V G G + ++ ++ + + + + + Sbjct: 363 KGKIITVFG----CGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGM 418 Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451 E D D++++ K Sbjct: 419 KGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKG 452 >gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] Length = 495 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 67/464 (14%), Positives = 136/464 (29%), Gaps = 37/464 (7%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 + + I Q + + ++++I F IKG +D HD I V++GA VVV Sbjct: 7 AEGLDIEIISGELQDEFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAKAVVV 66 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128 D+ I V V D AL +L+ A K II ITG+ GKTT+ ML Sbjct: 67 QKDIKRD----DICVIKVSDTRVALARLSAAYFSHPAKKMKIIGITGTKGKTTSSYMLQK 122 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLAR---------------MPVDVDFGIFELGMSHLG 173 L K + + + + ++ + E+ S Sbjct: 123 LLGQNAKVGLIGTNGITIGDTHRSTLNTTPESYELHKTFKECLDANCEYVVMEV--SSQA 180 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + + I + T I+ H+ ++ ++ +N +D Sbjct: 181 VMLKRIEGICFDIGIFTNISHDHIGP-DEHKDFDEYLMYKSLFFKQCKNTIVNIEDEHAN 239 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + S + T G + + K + + + + + Sbjct: 240 YVLKTSDSKQKYTFGKGGDFDIKNIEYISNKDFLGTRIDIKCREEIAEKYSVNNEISDIY 299 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPAS 352 + + + L+A I + K + +T + Sbjct: 300 VGIPGEFNVYNALSALSAAIICGVKEADLKNALKDSRVNGRMEVAYTSHDFNVVIDYAHN 359 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-- 410 + S++ + + R + V G G S+ + E+ + + Sbjct: 360 AISTESLIHTLRNYKPKRLVIVFGS---GGNRSKDRRYSMGEICGKMADFSIVTADNSRF 416 Query: 411 -------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 ++ P + + GD++ Sbjct: 417 EKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLI 460 >gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] Length = 486 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 86/474 (18%), Positives = 154/474 (32%), Gaps = 46/474 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+ +Q + + I D+R + P F I+G DGHDF A +K Sbjct: 3 LHKLLRFLQPYMTFKGENPEITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASAAKK--- 59 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 + L IPV V + A+ LA A + +I ITG+ GKTTT Sbjct: 60 --GAAAVIAQRELDLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTTSH 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 ++ L+ + IG+ I VD + E+ Sbjct: 118 LIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVMEV- 176 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 S H +IAV T + HL ++E A G Sbjct: 177 -SSHALDEGRIHGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEPKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + A+ + S+G + AD + + S + ++ +V Sbjct: 236 AILNSDDPASAEYEKSTAAHVISYGIDQEADLRAINIQMTSGGTEFDLISPFGKHKVSLK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L ++G + IK+ GR + + Y Sbjct: 296 MIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAGQDFSVIVD----Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + P S+K A+ + Q + + + G+ +S +AE+ Y+ ++ Sbjct: 352 SHTPDSLKNALETVKQFALKR------IFTIVGCGGDRDRSKRPLMAEIACQYSTDPIFT 405 Query: 407 SG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 S + + + + + + + GDV+++ K Sbjct: 406 SDNPRSEDPIQILRDMEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKG 459 >gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] Length = 494 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 71/460 (15%), Positives = 143/460 (31%), Gaps = 42/460 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + V + +DSR+ + F A+ G DG FI AV G V+ D G Sbjct: 21 ELESIAVEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGL 80 Query: 81 LS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131 + +PV ++++ L++LA +I +TG+ GKTT +++ L Sbjct: 81 IEWLDTVPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140 Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLV 182 + + + N G + + R + + +S G ++ + Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKAL 200 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + V T ++ HL +EE A AK +F + + D+ + S+A+ Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQHKCKHAVINVDDEVGKAWMSDLSNAI 260 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + G + ++ IG A N+L+ Sbjct: 261 AVSLSPLTG--YQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFAT 318 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L D + P GR + ++ + +A L+ Sbjct: 319 LLSLGIDKQILVDTAPQLQPVIGRMELFQVPNKAKVVVDYAHTPDA-------LEKALAA 371 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413 + H G+ A+ G G + + + + +S + Sbjct: 372 LRVHCSGKLWAIFG----CGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKD 427 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + F D++++ K Sbjct: 428 MLAGLSKPEAAFVEHDRYQAVKFALEQAGSDDIILLAGKG 467 >gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] Length = 495 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 85/467 (18%), Positives = 149/467 (31%), Gaps = 36/467 (7%) Query: 11 LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L A+ +G + V G+++DSR + P F A+ G G F+ A+ GA ++ Sbjct: 8 LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67 Query: 70 VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + A + + +D AL A R AT++A+TG+ GKT+ Sbjct: 68 TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127 Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172 +++ IG+ P+TL R+ D + S Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + V A T HL E +AKA +F + + D Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A + + G AD +L + + + QG IG Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 A N+ + G+ + GR + N +D ++ + + Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGA-SVFVDYAHTPDALA 366 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408 L + PH GR I V G G L + + ++++ Sbjct: 367 T-----ALKALRPHVMGRIIVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417 Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + H L +L GD +++ K Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464 >gi|330888578|gb|EGH21239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 350 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 161/353 (45%), Gaps = 11/353 (3%) Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 A+TGS GKTT KEML L + A G+ NN +GVPLTL + + + ELG S Sbjct: 1 AMTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASR 60 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 +GEI F L +PH+A+IT AH+ F G ++I AK EI EGL +GT LN +D Sbjct: 61 VGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKA 120 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 F + + ++ I T + + + +V + +G H Sbjct: 121 FPVWRKRAGNRNILTFALADPAADLHASDLSNDAR-GCPGFTINSPLGVAQVQLNLLGAH 179 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L L ++ + L+ P +GR + +ID++YNANPA Sbjct: 180 NVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGT---RIIDDTYNANPA 236 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 S+ AA+++L+ + GR + VLGD+ E+GE ++ H D+ + +S ++ G + Sbjct: 237 SINAAVNILTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLM 291 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 A H ++ + L + + +++K S S ++ L Sbjct: 292 THAVSAF--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 342 >gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] Length = 516 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 80/501 (15%), Positives = 169/501 (33%), Gaps = 58/501 (11%) Query: 4 LWTFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T +L + + + P + G+S+DSR + + F A+KG +G +I A++ Sbjct: 9 MTTLSELLAEFVD---VSRCPATPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALK 65 Query: 63 KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +GA V++ + A G LS+PV V + ++ +A + + AITG+ GK Sbjct: 66 QGAAAVLIEAGEETADHGQLSVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGK 125 Query: 120 TTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------- 166 TT ++L + +A + D + + Sbjct: 126 TTCAQLLANLFELLGEPAGCVGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVA 185 Query: 167 -----------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + S G ++ +R A+ T ++ HL + A+A Sbjct: 186 MQRILAELRDAGARRVAIEASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAA 245 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+ + + +N DD+ L+ A YSF ++ AD + + + Sbjct: 246 KSRL-FAMSGLKHAVINLDDNVGRLILANLDPAVDGITYSF-ENHTADIHCDRIELGAST 303 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 E+ + +G N+L +G + +D + A + GR + Sbjct: 304 LSAELVTPWGRGRLTSPLLGKFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEI 363 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + + +A ++ + G+ + V G G+ + Sbjct: 364 VDPSARPLVVVDYAHTPDALDKAL-------RALRLQCSGKLVVVFG---CGGDRDRGKR 413 Query: 390 IDLAEVLSLYNISHVWLSGFHVL-----ALKDA--LPRSIHVHYSETMDGLFLFIQSSLV 442 ++ V V ++ + + D L S V ++ Sbjct: 414 AEMGRVADQL-ADLVVVTSDNPRSESPEKIIDQVLLGISRKVLAVADRRDAIRAAINAAA 472 Query: 443 DGDVVVVKSSNSCGFYRLINL 463 D+V++ Y++++ Sbjct: 473 VDDIVLIAG-KGHEAYQIVDA 492 >gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] Length = 521 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 149/478 (31%), Gaps = 45/478 (9%) Query: 7 FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL +A+ G V GI+ DSR++ P + + A+ G + G DF A G Sbjct: 17 LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + + + +PV V D G + LA I ITG+ GKTTT Sbjct: 77 AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 136 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180 ++ L + + IG+ IG + P D M G Sbjct: 137 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 196 Query: 181 LVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + +AV ++P H+ SG+E+ AKA++F + + D Sbjct: 197 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVVNHDD 256 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L+ I +F + D R + + G Sbjct: 257 EYGRRLITEA-----EVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGSRYPARA 311 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 A N+ TL V+ L A G R + + + + Sbjct: 312 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDEGQPYLAVVDYAH- 370 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A SVL + EGR VLG G+ + + + + V S Sbjct: 371 ---KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSD 424 Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451 LA+ A+ + + + GD V++ K Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKG 482 >gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] Length = 479 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 87/459 (18%), Positives = 146/459 (31%), Gaps = 43/459 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G+S+DSRS+ +AFFA+ G G + AV++GA +VV ++ Sbjct: 2 PDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSSGAGVRAPEP 61 Query: 83 IPVFGVD--DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 F V D+ L +A +IA+TG+ GKT+ + AL T Sbjct: 62 GLGFAVPVRDLGRHLGSIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQPDHPTAV 121 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLV 182 G+P L R+ I L S G+ + + V Sbjct: 122 IGTLGW---GLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRINGV 178 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 A+ T I HL+ E +AK + DD + + A Sbjct: 179 HCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALEFVAVTL-DDPSVDAILRSVPAG 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 YS G ++ DF + + + + + + + N LG Sbjct: 238 VKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAENLLGT 297 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 +++L A A S R G ++D ++ + +VL+ Sbjct: 298 LAVLVGLGYPAEAAASRVGRVRPVPGRMERFRENGLTVIVDYAHTPDA-----LRNVLTS 352 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDA 417 + H R V G G ++ HV ++ + A+ Sbjct: 353 LRRHCRERLWVVFG----CGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQD 408 Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + DGD+V+V K Sbjct: 409 ILAGCGETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKG 447 >gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 493 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 143/477 (29%), Gaps = 45/477 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L+ ++ + G+ DSR I P F I G DGHD++L AV Sbjct: 1 MARLENLISGLEVIETSGDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA ++V + G+ + V V D AL +A +I +TG+ GKTT Sbjct: 61 GAIALLVEKPVA---GTQGVTVVRVKDTRKALPIVASNFYGAPSRQLRLIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------L 167 T ++T L G + + + + E + Sbjct: 118 TTHLITSVLEEAGYQVGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTVM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + AV T + HL +++ AK ++F L+ F Sbjct: 178 EVSSHALDLGRVDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAVI 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + ++G + A + + + E S ++ + + + Sbjct: 238 NRDDPSWTVFRDATPS--RVVTYGITDEAAVRATEVRVEPEGSCFTLKWPEGDLRLSLNL 295 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G+ N L + + L GR + +C + + + Sbjct: 296 SGWFNVSNALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCGQDFTVIVDYAHTPD 355 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 ++L + R I V G G L ++ ++ Sbjct: 356 G-------LENILKTARAIAKKRIITVFG----CGGDRDRGKRPLMGKIAAECSDFSIIT 404 Query: 408 GFHVL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + D+V++ K Sbjct: 405 SDNPRSEDPLAIIEDIVTGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKG 461 >gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio fibrisolvens 16/4] Length = 490 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 151/474 (31%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + ++ + DSR + F I G D HDFI ++KG Sbjct: 1 MKLTTLLEELDYELYAGELDKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFIPDVIEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +++ D+ G I V + AL L+ A + I ITG+ GKTTT Sbjct: 61 ATAIIIEKDVEPVDG---ITYIKVANSRQALAILSAAYFGHPAKELKTIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 M+ L IG+ + +G A + + E + Sbjct: 118 TYMVKSILEKAGIKTGLIGTIESIVGEERIPAVNTTPESYRVQELFRQMVDAGLDAVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + I V T + P H+ E + Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIG-----ENEHKDFEDYMHCKSLLFQQCKVGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + +G K+ D + +E + V+ E + + Sbjct: 233 FNGDSEHIEGILKGHTCDVIKYGYGKDNDLIAENVELLNENGALGVRYHITGKEDMTVEV 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L V+I K S +G+ ++ F +ID ++NA Sbjct: 293 NVPGTFSVYNSLTAVAICKQFNVAEDKIKSALMNVHVKGRIELVPVSSKFTVMIDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A S+L+ + + GR + + G G ++S ++ EV S V S Sbjct: 353 -----MALESLLTTLKAYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSKLADLTVVTSD 404 Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + ++ +GD++V+ K Sbjct: 405 NPRNEEPMDIINDILIGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKG 458 >gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] Length = 495 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 152/480 (31%), Gaps = 42/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +L+ + + ++ + +DSR I + F AI+G DG FI A Sbjct: 1 MNTPKALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKA 60 Query: 61 VQKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA +V+ D G +PV + ++ L++LA + +I +TG+ Sbjct: 61 IAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGT 120 Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD--------F 162 GKTT +++ L ++ T T + + Sbjct: 121 NGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L S G ++ + V + ++ HL ++ A AK +F Sbjct: 181 QYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I D + K HA+G+ + ++ + + ++ E Sbjct: 241 IINVDDAVGAQWGKQLPHAIGVSLLAQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+L+ L + L + + P GR + ++ Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREHKAKMVVDY 358 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H G+ A+ G G + ++ Sbjct: 359 AHTPDA-------LEKALRALRVHCAGQLWAIFG----CGGDRDRGKRPMMAAIAEQFAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + L H + + D++++ K Sbjct: 408 RVILTDDNPRSESPQAIVADMLVGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKG 467 >gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M605] gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli SE15] gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli AA86] gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M605] Length = 495 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. novicida GA99-3549] gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida GA99-3549] Length = 479 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 137/474 (28%), Gaps = 49/474 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ ++ + +DSR + AF A+KG DG+ +I + K Sbjct: 1 MKRINQILKFLDIKTLSQN-NFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G LV+ ++ VF + ++ L+ LA K II ITG+ GKT+ Sbjct: 60 GVSLVLTDSHQFEDQK----CVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + E+ Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYYKKYQNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + +A+ + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + I + K K + Sbjct: 229 INIDDEYGQRLCNMTQAPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L P +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + + ++ S + ++ Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + F + GD++++ K Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 451 >gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] Length = 508 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 158/475 (33%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++G++ S+ + P+ FFA+ G +DGHDFI A+QKG+ + Sbjct: 14 QDLIKHVKGSL-----DLEISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + DM S ++ VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDM--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + L I + G + +V + I Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ +AK +F + Sbjct: 187 LESTSHGLDLKTARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVS---DDA 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +F + + K+ KS ADF + + + + E +G Sbjct: 244 GFGVINFDDPYYSDFKNAVKKSFTYSLKSSKADFFVSFIDEKIDSTRFEFYHKGVKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G +N++ L +VS + I + K G+ L Q F +ID Sbjct: 304 VSLLGSFNVENIMAALILVSQILNSDIQDIV-DKLICIKSLDGRMDSVNLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQIADIYSDLI 413 Query: 405 WLS-----GFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVV 447 L G + + + + + I + + S GD+V Sbjct: 414 VLCDEDPRGENSMYIIKDIAKGIVNKVVNQDLFFIPDRRLAIEKAISLARAGDLV 468 >gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] Length = 493 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 75/459 (16%), Positives = 147/459 (32%), Gaps = 46/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 V+ + +DSR + F AI G DG FI A+Q+GA V+ + G++ Sbjct: 22 SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEI 81 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +PV +D + L+++A +I +TG+ GKTT +++ + + A Sbjct: 82 VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAV 141 Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183 +G+ N G L + L +S G I+ + Sbjct: 142 MGTTGN--GFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALS 199 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 V T ++ HL +EE A+AK +F + + D K ++AL Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTEHQCGHAVINVDDVVGAAWAKQLNNALA 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + + +E + + IG A N+++ + Sbjct: 260 VSLKPT--TEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTL 317 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + P GR + ++ N + +A L + Sbjct: 318 LSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVVDYAHTPDA-------LEKALQAL 370 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414 H +G A+ G G + + ++ V L+ + + + Sbjct: 371 RVHCQGELWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKDM 426 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + + D++++ K Sbjct: 427 LVGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465 >gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-12] Length = 489 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 91/473 (19%), Positives = 162/473 (34%), Gaps = 43/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL A+ + ++ I+ DSR I P F A+ G DG FI AVQ GA Sbjct: 5 LSTLLAAVG--LPILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ TD G + P+ + AL +A + AITG+ GKT+T + + Sbjct: 63 AVLAPTDTQWPTGVPTCPLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFI 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMS 170 + A IG+ +++ + + L S Sbjct: 123 RQIWALQGFKAAAIGTLGLTGAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEAS 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + + A T + HL IE +AK ++F+ L I D Sbjct: 183 SHGLEQGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADM 242 Query: 231 FFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L+A ++ A + +L + ++ G + V+ G Sbjct: 243 DAQTLQAIRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPG 302 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A N+L+ + + + A++ + L GR +R N +D ++ + Sbjct: 303 RFQADNVLLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACA-YVDYAHTPD 361 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + +L+ + PH G+ + VLG G S L ++ ++ Sbjct: 362 ALA-----RLLASLRPHARGKLVVVLGA----GGDRDSGKRPLMGQEAIKGADIAIITDD 412 Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +K P+++ + S L DV+VV K Sbjct: 413 NPRTENPASIRAEIKAGAPQALEI---ADRKQAIAEALSMLKADDVLVVAGKG 462 >gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actG] Length = 521 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 149/478 (31%), Gaps = 45/478 (9%) Query: 7 FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL +A+ G V GI+ DSR++ P + + A+ G + G DF A G Sbjct: 17 LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + + + +PV V D G + LA I ITG+ GKTTT Sbjct: 77 AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 136 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180 ++ L + + IG+ IG + P D M G Sbjct: 137 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 196 Query: 181 LVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + +AV ++P H+ SG+E+ AKA++F + D Sbjct: 197 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVVNYDD 256 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L+ I +F + D R + + + G Sbjct: 257 EYGRRLITEA-----EVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPARA 311 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 A N+ TL V+ L A G R + + + + Sbjct: 312 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDEGQPYLAVVDYAH- 370 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A SVL + EGR VLG G+ + + + + V S Sbjct: 371 ---KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSD 424 Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451 LA+ A+ + + + GD V++ K Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKG 482 >gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella woodyi ATCC 51908] gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC 51908] Length = 502 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 154/475 (32%), Gaps = 44/475 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL+ + VN +S+DSR + + F A+ G DG D+I A + GA + + Sbjct: 2 LLKDLLAPWFHYSGSESVNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSL 61 Query: 70 VNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+TD G + + + L+ LA A + ++ +TG+ GKT+ + Sbjct: 62 VHTDNPEMHGKVLTSNSTQIFFFQLSRQLSALAAQAYPLPVERLKLVGVTGTNGKTSITQ 121 Query: 125 MLTIALSS--------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 ++ L + G+ + ++ + + +S Sbjct: 122 LMAQLLVCLGKQPAVMGTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G I+ V +A+ T ++ HL ++ AK +F+ + DD Sbjct: 182 SHGLIQARVDAVPFDLAIFTNLSRDHLDYHGTMQAYGEAKFRLFKFPSLKSGVINLDDDL 241 Query: 231 FFELLKAKSHAL---GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + L A S S++A + ++ ++ + Sbjct: 242 GKQWLAQSDSAKLIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRAKLVWPEGCGNIDSPL 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G N+L L + L D++ + A+ + GR +++ + + Sbjct: 302 LGAFNLSNLLAALAGLYQLGFDMNALLNAVPKLNAVAGRMEQFTTENGITLVVDYAHTPD 361 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A L + H EG + G G L + + ++ Sbjct: 362 A-------IEQALKALRGHCEGELWCLFG----CGGDRDKGKRPLMAQSAEAYADRIMVT 410 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L R + + ++ GD++++ K Sbjct: 411 SDNARSESPDEIINDVLAGLNRPERAVTQVDRELAIREVLAAAKPGDLILLAGKG 465 >gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] Length = 483 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 98/453 (21%), Positives = 156/453 (34%), Gaps = 43/453 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + G+S DSR+I AFFAI G DG ++ A +GA +VV S+P Sbjct: 19 IEIAGLSADSRAIREGFAFFAIPGHAGDGLSYVDDARARGARVVVAQR-----QSECSLP 73 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------TYA 138 + VDDV L A R I A+TG+ GKT+ L +++ T Sbjct: 74 LVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKTSVVASLRQIWTAMGHEAASLGTVG 133 Query: 139 CIGSYNNHIGV-----PLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVIT 190 + S H G P+ L R+ D G+ + S LG + VR +A T Sbjct: 134 VVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLAMEASSLGIDQRRLDGVRLSVAGFT 193 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL + +EE +AK +F+ L + G + DS A ++ Sbjct: 194 NFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVIDADSDVAPRVAAVCEKRGLNVFGV 253 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G A +R+ + + + ++++ G V G N L+ G+ D Sbjct: 254 GAKGEA-IAVREARAHALATSLKLRHAGVDYSVELPLAGAFQTSNALVAAGLAIAAGDDP 312 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 AL+ GR + F A VL+ + P + R Sbjct: 313 ARVFSALNELKGAPGRLEFIGERDGAPVFVDYA-------HKPDALEKVLATLRPLTKRR 365 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL-----PR 420 I V G G L ++ ++ A++ A+ Sbjct: 366 LIVVFG----CGGDRDRGKRPLMGEIAARAADVAIVTDDNPRSEDANAIRAAIIEGARGG 421 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L GDV+VV K Sbjct: 422 GAEIIEIADRGEAISKAVADLRAGDVLVVAGKG 454 >gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actF] Length = 526 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 149/478 (31%), Gaps = 45/478 (9%) Query: 7 FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL +A+ G V GI+ DSR++ P + + A+ G + G DF A G Sbjct: 22 LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 81 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + + + +PV V D G + LA I ITG+ GKTTT Sbjct: 82 AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 141 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180 ++ L + + IG+ IG + P D M G Sbjct: 142 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 201 Query: 181 LVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + +AV ++P H+ SG+E+ AKA++F + D Sbjct: 202 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVVNYDD 261 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L+ I +F + D R + + + G Sbjct: 262 EYGRRLITEA-----EVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPARA 316 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 A N+ TL V+ L A G R + + + + Sbjct: 317 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDEGQPYLAVVDYAH- 375 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A SVL + EGR VLG G+ + + + + V S Sbjct: 376 ---KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSD 429 Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451 LA+ A+ + + + GD V++ K Sbjct: 430 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKG 487 >gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1] gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1] Length = 496 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 182/392 (46%), Gaps = 9/392 (2%) Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V ++ S++ P F V+D L +L+ R ++AITGS GKT+T+ M+ Sbjct: 81 VIVTEKPIMD--PSVTTPQFIVEDSRKFLLELSAKLRSCFVNPVVAITGSAGKTSTRMMI 138 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RP 184 T L K ++N VPL ++++ + D E+ ++ L + + Sbjct: 139 THLLQEEKVLENRG-NHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQ 197 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHAL 242 IA++T+I AHLS+ + +A KA+IFEGL++ G +N D F +L + + Sbjct: 198 DIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKR 257 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K + + D +++ Q E + V G+ + + M N L L + Sbjct: 258 TSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIV 317 Query: 303 VSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L ++ IK F P + + + FT ID+++NA+ SMK AI+ Sbjct: 318 AKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFD 377 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 I P +G ++ +LG + ++G+ ++ H + E L+ +H++ G H L + + Sbjct: 378 GIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKT 437 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + +++ L +++ L++ +V+ K S Sbjct: 438 DDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 469 >gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii NCTC 11218] Length = 495 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 160/480 (33%), Gaps = 45/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + T L Q I P V + +DSR I + F AI G DG FI A Sbjct: 1 MNTSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKA 60 Query: 61 VQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA LV+ + ++PV ++ + L++LA +IA+TG+ Sbjct: 61 ITQGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGT 120 Query: 117 VGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166 GKTT +++ + + +H+ V+V +FE Sbjct: 121 NGKTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGA 180 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ V V + ++ HL ++ A AK +F E Sbjct: 181 EYTAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I D+ + HA+G+ + + ++V + + Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNA--KPNAEQALWAVQVSYAESGITIDVDGSWGAGQ 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+++ L + L ++D + A P GR + ++ Sbjct: 299 LRAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVVDY 358 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H +G+ A+ G G + + ++ Sbjct: 359 AHTPDA-------LEKALRALRVHCQGQLWAIFG----CGGDRDTGKRPMMAAIAEAFAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + L H + S + D++++ K Sbjct: 408 RVILTDDNPRSEDPQAIVNDMLAGLKAPQHANVEHNRFDALRTALSQAGEQDIILLAGKG 467 >gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetohalobium arabaticum DSM 5501] gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetohalobium arabaticum DSM 5501] Length = 496 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 80/482 (16%), Positives = 156/482 (32%), Gaps = 50/482 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + ++++ ++ + + GI+ DSR++ F I+G DGH++I A+ Sbjct: 1 MKNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDS 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA ++V ++ + V DD L +++ A ++ +TG+ GKTT Sbjct: 61 GATALLVEKEVEV---DSEVTVIKTDDTRLGLAEVSAAFYDYPSRELKVVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFE--L 167 ++ L IG+ N + ++ + +D G+ + Sbjct: 118 NTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVTHVVM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + +A+ T I HL E +AK ++F L+ + Sbjct: 178 EVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKTAII 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + + ++G K+A+ + + ++ ME+ + Sbjct: 238 NID--DPHSDEFLEAANSKVLTYGIEKDANLKAKDITISPTGVEFGLESTIGEMELDLNI 295 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G N L +G L D+D L GR + A + G Y Sbjct: 296 TGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEAQDFGVIVD----YA 351 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISHVWL 406 P S++ + EGR I V G G + +V V Sbjct: 352 HTPDSLRNILETAHDF---VEGRIIVVFG----CGGDRDKDKRPIMGQVAVELGDFAVVT 404 Query: 407 SG-----FHVLALKD---ALPRSIHVH-------YSETMDGLFLFIQSSLVDGDVVVV-- 449 S + D + + E + S D+V + Sbjct: 405 SDNPRSEEPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVFIVG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] Length = 491 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 93/459 (20%), Positives = 159/459 (34%), Gaps = 37/459 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G V+GI+ DSR + P+ F AI G DG FI A+Q+GA ++ D A++ Sbjct: 16 GCGHDPEVSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAIISTPDACAAVR 75 Query: 80 SL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 I DD AL+ +A A ++A+TG+ GKT+T E + Sbjct: 76 QAGHDIACIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAA 135 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHL 181 A IG+ L+ + G+ + S G + Sbjct: 136 ASIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRLDG 195 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSH 240 V A + + HL ++ +AK +F+ L G + + D L+A ++ Sbjct: 196 VPLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALRAI 255 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A+ +L + + ++V+ G EV G + NML+ Sbjct: 256 AVKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDVECNGTRHEVATRLPGRYQVDNMLLAA 315 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + + AI L GR + N +D ++ + +L Sbjct: 316 GLAASSRDMMSAAINCLPALVGVRGRMEHAVTLPNGA-AVYVDYAHTPDALE-----RLL 369 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL- 414 + PH GR +AV G G L ++ ++ A+ Sbjct: 370 LSLRPHASGRLVAVFGA----GGDRDRGKRPLMGAVAGRLADMAIVTDDNPRTEDAAAIR 425 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + S L GDV+VV K Sbjct: 426 REVMAGAPDASDIGGRRQAIAEGLSRLKAGDVMVVAGKG 464 >gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter turicensis z3032] gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter turicensis z3032] Length = 501 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 11 NLRDLL----APWVAGLPARALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 66 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +V A+ G + +PV + + L+ LA +I +TG+ GK Sbjct: 67 AAIVAEAKGEATDGEVREIHGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIGVTGTNGK 126 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165 TTT +++ + + + N +G + Sbjct: 127 TTTTQLIAQWCQRLGETSAVMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLAAQGATVA 186 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ V T ++ HL +E +AK +F + Sbjct: 187 AMEVSSHGLVQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFSAHHYGQAVIN 246 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 247 ADDEVGRRWLAKLPDAVAVSMENNINPDCHGRWLRADAVEYHDRGATLRFSSSWGDGEIE 306 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ LG + L + +++ P GR + + Sbjct: 307 SRLMGAFNVSNLLLALGTLLALDYPLAALLESAPRLQPVNGRMEVFSAPGKPTVVVDYAH 366 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 367 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADVV 415 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + E + DVV++ K Sbjct: 416 VVTDDNPRTEDPRAIIADILTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKG 473 >gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 511 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 81/489 (16%), Positives = 149/489 (30%), Gaps = 56/489 (11%) Query: 5 WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +L+ I+ + I +S+ I F AIKG DGH +IL A + Sbjct: 1 MNLRKILKNIEILDTKNFIDFDVDIKKICYNSKFITESSLFVAIKGYITDGHKYILQAYE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT 120 KGA +V IP V++ L ++ K I+ IT + GKT Sbjct: 61 KGAVCAIVE-----DFIDCEIPQLKVENTRIELANVSKNFYDDPSQKLNIVGITATNGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGI 164 TT ML + IG+ + ++ Sbjct: 116 TTSFMLDKIYNDAGYRTGIIGTVYTKYSDITIPSVLTTPESLELQSFFRDMLKKKIEKVT 175 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ S E + + +I + H+ E+ AK+++ + K Sbjct: 176 MEVSSSS--EELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKEASKNAVAI 233 Query: 225 LNYDDSFFELLKAKSHAL--------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 LN D + L ++ A + F + + + L Sbjct: 234 LNMDFDHIKDLLTQTKARVITYSLENNDYDFSISELDLSTGFGKYIFNVNRNIDFNDFVL 293 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + +S E+ GY N + + I + DVD K++S F E R + + Sbjct: 294 KKQSFEINLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVERRFEMIYDEKFK 353 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 N + + LS++ A+ G+ + + A+ L Sbjct: 354 IIDDHYANVKNIDV-----TLETLSKMKYKNFRMLYAIRGNRGVNLNRETA--EETAKWL 406 Query: 397 SLYNISHVWLS---------GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLV 442 + + + + +I+V + ++ I + Sbjct: 407 KKLDAKTFYATLSKDTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVYEILKTAD 466 Query: 443 DGDVVVVKS 451 GDVV+ Sbjct: 467 KGDVVLFAG 475 >gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] Length = 496 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 160/476 (33%), Gaps = 41/476 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL A+ G + + G+ +S + + F + G DG DF A+ G Sbjct: 1 MKLRELLAAVDGVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 A +V+ + V D+ A +LA A K ++ +TG+ GKTT Sbjct: 61 ALAAIVSPAALQKNPPTGEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNGKTT 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T ++ L+ + A +G+ P F + Sbjct: 121 TTHLIEFLLTKANLSTALMGTLYTRW--PGFEQTAVHTTPFAVDLQQQLAEAVNAGCEFG 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + +AV + + HL + +E+ +AKA +F G + Sbjct: 179 AMEVSSHALAQGRVLGCEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGRAII 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + + L A + + + + +AD + + ++ Sbjct: 239 NADDDYGQRLIASLSSERVWSY--SVNNHSADLWMSDLSYEPNGVSGMLHTPKGNVAFRS 296 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G + +N+L +G V L D+ A+ F GR +R + Q ++D + Sbjct: 297 PLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEISVIVDYA 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + ++L P G+ I V G G+ ++ + ++ + V Sbjct: 357 HTPDSLE-----NLLKAARPFIPGKMICVFG---CGGDRDRTKRPKMGKIAAELADVAVL 408 Query: 406 LSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + +P ++ GD V++ K Sbjct: 409 TSDNPRTEDPERILQDVLAGIPDTVKPTVICDRAIAIRTAILQAQPGDGVLLAGKG 464 >gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] Length = 506 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 153/475 (32%), Gaps = 44/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + V GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 17 LAELADQLGA--AQPDRTADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +PV V+D + +LA R I ITG+ GKTTT Sbjct: 75 AVLTDPGGAERAAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTTTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 ++ L + K T + R + + +S Sbjct: 135 LVEGGLKTAKATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSS 194 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + +AV T ++P H+ SG+E+ AKA++F ++ +N DD + Sbjct: 195 HALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PARSRLGIVNADDEY 253 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L ++ + ++ + D R + G V Sbjct: 254 GRRLAEEATVPVV----TYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARSPLP 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ TL + L A A A G R + + + + Sbjct: 310 GPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDAGQPYLAVVDYAH---- 365 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 A SVL + +GR VLG G+ ++ + ++ + V S Sbjct: 366 KTDAVESVLRALRKVTKGRVHVVLG---CGGDRDRTKREPMGAAVARLADTAVLTSDNPR 422 Query: 409 -FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 LA+ A+ + V E + GD V+V K Sbjct: 423 SEDPLAILAAMLQGAASVPAHERGEVLLFEERAAAIAAAVARARPGDTVLVAGKG 477 >gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] Length = 512 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 94/482 (19%), Positives = 156/482 (32%), Gaps = 54/482 (11%) Query: 3 PLWTF-------HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 PL T +L + + V G V G++ DSR + P AF A+ G DG + Sbjct: 15 PLATLPGMAVEREELRRVLGVEVPAGV--GRVCGVTHDSREVEPGFAFVAVPGFKRDGVE 72 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 F+ A+++GA LVV ++ PV V D AL LA A + + Sbjct: 73 FVPEALRRGAALVVAEREVPE------APVAVVPDARAALAALACAFHGHPSRRMEVYGV 126 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------- 165 TG+ GKTTT L L+ C + Sbjct: 127 TGTNGKTTTCYALHAVLAGAFGEERCGLMTTAEVVAGGERRPAVRTTPEATEVQAALAGM 186 Query: 166 --------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + +S G +R AV T ++ HL +EE K +F Sbjct: 187 RERGVERVAMEVSSHGIALRRVEGIRFAGAVFTNLSRDHLDLHGTMEEYYRTKRRLFLWA 246 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G N DD++ L + + +FG + AD+++ + + ++ Sbjct: 247 R--GPKLSNADDAWGRRLAGEVEGVR-----TFGSAVGADYRIEGVRPSGAGTRFVLRRG 299 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 +++ + G + QN + L +T +AL GR + G Sbjct: 300 EEALRIEVPLFGDYNVQNAAGAAALALELGVPGETVARALRGMPQVPGR---FERVGGPG 356 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F ++D ++ + GR I V G E + +A L+ Sbjct: 357 FEVIVDYAHTDVGLEAVLRV-AREVARRGRPGRVICVFGAAGERDGAKRPLMGRVASRLA 415 Query: 398 LYNI---SHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 I + + + + + S +GDVVVV Sbjct: 416 DRGIITTDDAYS--EDPEKIAREVAAGVEDGRLEIVLDRREAIRRALSEAGEGDVVVVAG 473 Query: 450 KS 451 K Sbjct: 474 KG 475 >gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcaceae bacterium D16] gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcaceae bacterium D16] Length = 495 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 134/482 (27%), Gaps = 59/482 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LW LL + + IS D+R++ P F A+ G DG +I A Sbjct: 1 MK-LW---QLLAGVPLTGEPYSQDMEITSISYDTRTLLPGALFVALPGAKTDGSLYIDEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + KGA VV F D AL LA + I + Sbjct: 57 LAKGAAAVVCRRRPQREGV-----FFTTPDPRRALALLAENWFGHPGREMTLIGVTGTNG 111 Query: 121 ------TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-------------RMPVDVD 161 KEML AL + I + +P Sbjct: 112 KTTTTFLIKEMLEGALKTQVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLREMADSGCT 171 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+ SH + + +A T + HL +EE SAK +F + Sbjct: 172 HVVMEV-SSHALVQHRV-EGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLFHQCRRAV 229 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + ++ L AD + + Q E + + Sbjct: 230 LNLDDEAGRWYRE------RLACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAREQIQ 283 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V G N L L + L + AL +GR +T+ Sbjct: 284 RVFLPIPGGFTIYNALCALSVGLCLGLRLSECAAALRSARGVKGR---VEVVPVPTAYTV 340 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + S A ++L GR I + G G + + Sbjct: 341 LIDYAH----SPNALENILLTARDFTAGRLICLFG----CGGDRDRTKRPIMGDVVKELA 392 Query: 402 SHVWLSGFHVL------ALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 ++ + ++D L +H + S GDV+V+ Sbjct: 393 DLAVVTSDNPRTEDPEDIIRDILAGMEGEGAQIHVEPDRRQAIAWALSQGRPGDVIVLAG 452 Query: 450 KS 451 K Sbjct: 453 KG 454 >gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 497 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 81/478 (16%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 8 HDLLQAI-QGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L++A+ I V + DSR + F AIKG ++DGH I V +GA Sbjct: 6 KELIEALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAIAEVVAQGA 65 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 L++V + A+ ++ VD A LA K ++A+TG+ GKTTT Sbjct: 66 KLIIVEQ-LPANYQTIPANFVLVDSSFRAQAILANKFYQEPSRKLKVVAVTGTNGKTTTS 124 Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-------RMPVDVDFGIFEL 167 M++ L+S+ IG+ + P L + + E Sbjct: 125 SMISDLLTSLDHKTGKIGTLHYKVADTYYPAVNTTPNALHLQALFAEMLERGCQDAVIE- 183 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224 S A+ T + HL ++ A AK G Sbjct: 184 -ASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQLGQAFHQGRPR 242 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 L + + + A + + A + + ++ + E+ Sbjct: 243 LAIINKDDPYWEVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFKLHFNDQVFELE 302 Query: 285 HHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G++ N L L + DV ++A F GR + + Sbjct: 303 LPMRGHYNVSNYLAAFLCLACYYEIDVANILRATKDFKGVSGRMEVLALNKDFDVVVDFA 362 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A V+ ++ H +GR +L M G S + + Sbjct: 363 HTSDA-------LERVMQELVSHKQGR---LLALMGHSGGNRDSGARPGIGDVLFNYADY 412 Query: 404 VWLSGFHVL-----ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + E + + GDV++ K Sbjct: 413 IVFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKG 470 >gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi N40] Length = 508 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 142/475 (29%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G + G++ S+ + P+ FFA+ G H+DGHDFI A+Q+G+ + Sbjct: 14 QDLIKCVKGSL-----DLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + D+ S + VDD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDL--DFYSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164 + + I + G + + + I Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V V T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L + +K +++ + + S + Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + +M I+ ++D + K G+ L Q F +ID Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L ++ + Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413 Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD+V Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468 >gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella cf. novicida Fx1] Length = 487 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 58/474 (12%), Positives = 136/474 (28%), Gaps = 49/474 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + + +DSR + AF A+KG DG+ +I + K Sbjct: 1 MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G LV+ ++ VF + ++ L+ LA K II ITG+ GKT+ Sbjct: 60 GVSLVLTDSQEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + + E+ Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKNYRNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + +A+ + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + + K K + Sbjct: 229 INIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L P +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + ++ S + ++ Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDISKRPIMAQIAEEYASKIVITE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + F + GD++++ K Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 451 >gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 494 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 73/480 (15%), Positives = 145/480 (30%), Gaps = 43/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ T LL S + + + +DSR I F AIKG DG FI A Sbjct: 1 MSKELTLTHLLAPWVSLSHQVCNDVAIQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAA 60 Query: 61 VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +Q+GA ++ G + S+ V + D+ L++LA + S +IA+TG+ Sbjct: 61 IQQGANAIIAEAGEQNVHGKVEQLGSVSVVYIADLSQKLSQLASRLQPLSYNQLIAVTGT 120 Query: 117 VGKTTTKEMLTIA-------------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 GKTT +++ + + + ++ Sbjct: 121 NGKTTITQLIAQWLELSGQRAAVLGTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGA 180 Query: 164 IF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + + +S G ++ + + V + ++ HL +EE A AK +F + Sbjct: 181 QYTAMEISSHGLVQNRVKALSFSVGVFSNLSRDHLDYHGTMEEYARAKLSLFTVHDCAKA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D + + + + + Q Sbjct: 241 VINIDDTVGASWV---ELLDNCIPVSLSPIQTGKGVFATQVQYSEAGITLSFSGQYGEGR 297 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG A N+++ + L D +++ S P GR + + Sbjct: 298 FTVPLIGEFNASNVMVAFATLLSLGIDKQILVESASQLKPVLGRMELFHAQGKAKVVVDY 357 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H GR A+ G G + + + Sbjct: 358 AHTPDA-------LEKALLALKVHCNGRLWAIFG----CGGDRDTGKRPMMASIGEKLAD 406 Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + + + + D++++ K Sbjct: 407 VVILTDDNPRSESPSAIVKDMLAGMASPENAIVEHDRYNALVHALKHSSGDDIILIAGKG 466 >gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708] gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708] Length = 494 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 83/476 (17%), Positives = 162/476 (34%), Gaps = 41/476 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL A+ G V+GI +S + F I G DG +F A+ G Sbjct: 1 MKLRELLAAVDGVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFWQSALASG 60 Query: 65 AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 A +V+ + V V ++ A +++ A + ++ +TG+ GKTT Sbjct: 61 AVAAIVSPEAVQKNPPTPESLVISASNMNKACAQISAAFYGYPGQQLRMLGVTGTNGKTT 120 Query: 122 TKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIF 165 T ++ L+ + T S P + + +FG+ Sbjct: 121 TTHLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQAVDAGCEFGVM 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH + +AV T + HL +E+ AKA +F G + Sbjct: 181 EV-SSHALAQDRVFGCP-FEVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPDYLQGRAII 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + + L + + + +AD ++ + + Sbjct: 239 NADDEYGQRL--ITGLSKERVWTYSVNNHHADLRMSDLNYQPIGVSGILHTPKGDVAFSS 296 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G + +N+L + V L D+ A+S F GR +R + + N+ ++D + Sbjct: 297 PLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDVSVIVDYA 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + ++L + GR I V G G+ ++ + ++ + V Sbjct: 357 HTPDSLG-----NLLKSVRAFIPGRIICVFG---CGGDRDRTKRPKMGKIAAELADIAVV 408 Query: 406 LSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +P ++ GD V++ K Sbjct: 409 TSDNPRTEDPERIIEDILAGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKG 464 >gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB] gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB] Length = 495 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 137/479 (28%), Gaps = 49/479 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL G + P + +++DSR A + F A+ G DG FI A+ +G Sbjct: 5 NLRDLL----GPWVPGAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VV + A+ G + +PV + + L+ LA + I + Sbjct: 61 AAVVAEAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165 T +A + G+ L+ + Sbjct: 121 TTTTQLLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLT 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + + + + + G L Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDM-QSYESAKWLLFSEHQVGQAIL 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEV 283 N DD A+ T+ + + L+ + + + + E+ Sbjct: 240 NADDEVGRRWLARLPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEI 299 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N+++ L + L + T I P GR + + A Sbjct: 300 NSPLMGAFNVSNLMLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGKPTVVVDYA 359 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A L H +G+ + G G L ++ Sbjct: 360 HTPDA-------LEKALEAARLHCKGKLWCLFG----CGGDRDKGKRPLMGAIAEQYADV 408 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + L D+V+V K Sbjct: 409 VVITDDNPRSEDPQAIVNDILTGLLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKG 467 >gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] Length = 487 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 81/484 (16%), Positives = 151/484 (31%), Gaps = 60/484 (12%) Query: 5 WTFHDL-------LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 T +L ++ I+ H G V GIS +S+ I FFAIKG DGH+FI Sbjct: 1 MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITG 115 A + A VV D+ + V L AL + ++ + ++TG Sbjct: 61 QEAFKNKAIGAVVEKDVDY------VNTIKVRSTLQALRETSLVFYDYPFKKLFLGSVTG 114 Query: 116 SVGKTTTKEMLTIALSS----------IKKTYACIGSYNNHIGVP-----LTLARMPVDV 160 + GK+T +L+ A++ + +A P L + + Sbjct: 115 TNGKSTITWILSHAVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQL 174 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 D L +S H ++ A+ T +A H+ +E+ K +F Sbjct: 175 DMKYGFLEVSSHALKLGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTYLK 234 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 F+ + + + + SF K++ + V+ Q Sbjct: 235 ENAFVVINIDDLYGI-NLYNGIKDFRKASFSLENEKASFFGKFEPVDRGVCLLVEGQKVF 293 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G A N+L + ++ + D A GR C + F Sbjct: 294 AP----IYGRFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGR---LECVQTKPFKI 346 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ID ++ + VL + E + I V G G + ++ Sbjct: 347 WIDYAHTPDGLE-----KVLKSLRDMVEKKIILVFGA----GGNRDKGKRPIMGRIAAQF 397 Query: 401 ISHVWLSGFHVLA-----LKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + ++ + + D + ++ + D D +++ Sbjct: 398 SDYTIITSDNPRYEDPMSIIDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIII 457 Query: 450 --KS 451 K Sbjct: 458 AGKG 461 >gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. AS9601] gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. AS9601] Length = 511 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 80/482 (16%), Positives = 145/482 (30%), Gaps = 44/482 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + + +N IS +S+ + F + G + DG F + A++ GA Sbjct: 6 LHKLLDLVGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ IGS+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGPAAKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVD--------VDFGIFE 166 +L L + K G ++ +F I E Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILE 185 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTI 223 + S + A+ T + HL +E K EK G Sbjct: 186 V--SSHSIAQNRISGCEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGIC 243 Query: 224 FLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 LN+DD + L K L I + F + K S + Sbjct: 244 VLNHDDHWISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +++ +G N + + I+ L + K + F GR ++ + N + Sbjct: 304 IQLFVPLVGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRS 363 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 L + VL I EG+ I V G G L ++ Sbjct: 364 LPTVIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEEL 418 Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 ++++ + + + + + D+V++ Sbjct: 419 SDQLFITSDNPRTEEPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAG 478 Query: 450 KS 451 K Sbjct: 479 KG 480 >gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] Length = 495 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 159/480 (33%), Gaps = 45/480 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + T L Q I P V + +DSR I + F AI G DG FI A Sbjct: 1 MNTSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKA 60 Query: 61 VQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA LV+ + ++PV ++ + L++LA +IA+TG+ Sbjct: 61 ITQGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGT 120 Query: 117 VGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166 GKTT +++ + + +H+ V+V +FE Sbjct: 121 NGKTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGA 180 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ V V + ++ HL ++ A AK +F E Sbjct: 181 EYTAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I D+ + HA+G+ + + ++V + + Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNA--KPNAEQALWAVQVSYAESGITIDVDGSWGAGQ 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+++ L + L ++D + A P GR + ++ Sbjct: 299 LRAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVVDY 358 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H +G+ A+ G G + + ++ Sbjct: 359 AHTPDA-------LEKALRALRVHCQGQLWAIFG----CGGDRDTGKRPMMAAIAEAFAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + L H S + D++++ K Sbjct: 408 RVILTDDNPRSEDPQAIVNDMLAGLKTPQHASVEHNRFDALRTALSQAGEQDIILLAGKG 467 >gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured marine microorganism HF4000_APKG2M17] Length = 492 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 84/459 (18%), Positives = 156/459 (33%), Gaps = 48/459 (10%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 Q + + IDSR + + F A+KG + DGH FI AV GA +V + + Sbjct: 20 SASAQSSFDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGP 79 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +++ V D AL +LA SK + A+TG+ GKTT ++ L + Sbjct: 80 DIAL----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKS 135 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVR 183 IG+ G A ++E + +S + + Sbjct: 136 GFIGTTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRD 195 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +A+ T + HL S E +AK ++F+ L +N DD + + A + Sbjct: 196 VDVALFTNLTRDHLDYHSTFELYFAAKKKLFDELPDGAVAVVNVDDPRGKGIAADTTGSV 255 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 I +FG ++D + + + ++ ++A + + Sbjct: 256 I----TFGSDDHSDVSFSIEGNELSGLDLTIDGHRRRFQLAGTYNASNLAAAYAASRALG 311 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 +I ALS P EGR +R + T++ Y P ++K + + Sbjct: 312 LSAL----ESIDALSSSPPVEGRFERMQFEGG----TMVIVDYAHTPDALKNVLEATLE- 362 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 S + G G ++ V ++ + + Sbjct: 363 SMRPGSTLWCIFG----CGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILDDI 418 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + +S+V GD +V+ K Sbjct: 419 RQGLLKPEDAFWEIDRRDAISRAAASMVSGDTLVLAGKG 457 >gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] Length = 480 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 90/464 (19%), Positives = 151/464 (32%), Gaps = 43/464 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 I+ DSR + P AF AI G DGH+FI A+ KGA ++ ++ IP+ Sbjct: 12 FTDITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEI---KSRSGIPIV 68 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D L KLA K +I +TG+ GKTTT ++ L+ K IG+ Sbjct: 69 RVKDSRSILGKLAAEFYNYPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLIGTVK 128 Query: 145 NHIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 G + V + + +S G + I V T Sbjct: 129 VDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAIKVGT 188 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALGIKT 246 I H S + K E + LN DD + K + Sbjct: 189 NITVDHFDLHSDFSDYVQVKKSFLEDKNPHTLVLLNNDDHYLSSFGNIAKNQIGYGITTN 248 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++ N + +S Q V + N+ L ++I Sbjct: 249 TDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVPINLKIPGEHNIYNALVAITIG 308 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 T K F G +R++ N+ F + D ++N S A +SQ+ Sbjct: 309 LYYGLTPEKIQDFFGQFRGIWRRFQVIYNKDFAIIDDCAHNPG--SYGAVFKTVSQLKYK 366 Query: 367 GEGRRIAVLGDMCEM---------GELSQSFHIDLAEVLSLYNISHVW-----LSGFHVL 412 A+ G+ G+ + FH L N + V +S Sbjct: 367 NLLIVNAIRGNRGAQINKGNAETIGKWLKKFHNY---YLLTTNCNDVVKPIDKVSPEEEK 423 Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 AL +I + + + + + D++++ +++ Sbjct: 424 VFLQALDKNNIKYSHLDQLKPALKNVLDKVTPDDIILLLGAHAM 467 >gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] Length = 555 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 146/476 (30%), Gaps = 44/476 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + DL + G V GI+ DSR++ P + + A+ G G DF A GA Sbjct: 65 SLADLAGQLGAEQPGSA--AEVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGA 122 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 V+ + + +P VDD + +LA R I ITG+ GKTTT Sbjct: 123 VAVLTDPSGAERAAAAGLPALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTA 182 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMS 170 ++ L +++ T + R + + +S Sbjct: 183 YLVEGGLRTVRSTGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVMEVS 242 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + +AV ++P H+ SG+E+ AKA++ T + Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQL-----FTPERSRLGVVN 297 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + +F + D R + G E + Sbjct: 298 LDDEYGRRLVDEATVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPL 357 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N+ TL V+ L A G R + + + + Sbjct: 358 PGSFNVANTLAAVAALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH--- 414 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 A SVL + EGR VLG G+ + + ++ + + V S Sbjct: 415 -KTDAVESVLKALRKVTEGRLHIVLG---CGGDRDTTKRAPMGAAMARLSDTAVLTSDNP 470 Query: 409 --FHVLAL-------KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 LA+ ++P E + GD V+V K Sbjct: 471 RSEDPLAILATMLEGAASVPAHERGEVLLFEDRAAAIAATVARARPGDTVLVAGKG 526 >gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] Length = 485 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 65/450 (14%), Positives = 132/450 (29%), Gaps = 34/450 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + V G++ DSR++ + FFA+ G DG FI A+ GA +V + + + Sbjct: 19 ELAVTGLAADSRAVKLGDLFFALAGTKTDGARFIDAAIASGAVAIVGEH----APATGRV 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------- 136 P + AL A R ATI A+TG+ GKT+ + Sbjct: 75 PFIATPNPRRALALAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGTI 134 Query: 137 -YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVI 189 + ++D E L S G ++ VR A Sbjct: 135 GVVTPSRTVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRLDGVRVRAAGF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ H+ + K +F L + I + D ++ + Sbjct: 195 TNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGIAVISTDHDCSHTVIEAANARKVRVMR 254 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G+ + + + + + + + + + + L ++ Sbjct: 255 VGRRSDGALAGIRLVEAAIEDFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVIGT 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + EG R + + + A L + P+ + Sbjct: 315 GSDPDQVFAALEHLEGARGRLELVGEHNGAPVFVDYAH----KPDALAKALLALRPYAKR 370 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIH 423 + + V G G + L ++ N V ++ + + L + Sbjct: 371 KLVVVFGA----GGDRDAGKRPLMGAIAADNADVVIVTDDNPRSEDPAAIRAAILAAARG 426 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L GD +++ K Sbjct: 427 ACEIGDRAEAIRGAIAGLQPGDALLIAGKG 456 >gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] Length = 520 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 146/477 (30%), Gaps = 41/477 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ + + + ++ DSR + P F AI+G +DGH +I AV+ G Sbjct: 16 LSAIVRELDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSG 75 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122 A V+ + V D AL A A + I I +TG+ GKTTT Sbjct: 76 AAAVICEA--LPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIFLIGVTGTNGKTTT 133 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFE 166 ++ L+S + P + + E Sbjct: 134 ARLIADMLNSCGIPAGYIGTNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAVME 193 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH + + +R AV T ++ HL + A AK +F+ L+ G N Sbjct: 194 V-SSHALVLDRV-SGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQLDPEGFAVFN 251 Query: 227 YDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD + + ++ A + + S V Sbjct: 252 IDDPYASQMASRVAADKRFCCTLKPQRELTLRCGRSFSAAVSSRTLGSASVELHFPDAVH 311 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N++ L ++L+ +V R + Sbjct: 312 TVQTELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVEGRMERIWDTEKSRCAFV 371 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P +++ A+S L ++ + V G G ++ V Sbjct: 372 DYAHTPDALEKALSALGELKSSDAR-LVVVFG----CGGNRDRLKRPEMGRIASEKADFV 426 Query: 405 WLS-----GFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +L+ + + D + + + ++L+ GD+++V K Sbjct: 427 FLTSDNPRDENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPGDILLVAGKG 483 >gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] Length = 491 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 82/457 (17%), Positives = 154/457 (33%), Gaps = 46/457 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + +DSR + FF I G DGHDF A++KG +V D+ ++++ Sbjct: 23 DQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVAIVAEKDL-----NVAV 77 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V A+ ++ A SK +I +TG+ GKTTT ++ L +K IG Sbjct: 78 PVIKVTSSKRAMAIISSAFYDYPSSKLHLIGVTGTNGKTTTTHLIEKILRDAEKNTGIIG 137 Query: 142 SYNNHI--------GVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187 + + + E + +S H ++A Sbjct: 138 TMYMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNVVTMEVSSHALELGRVHGTHFNVA 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 V T ++ HL +E A AK G + + + + + Sbjct: 198 VFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDKSQPVAVLNRDDDTFDLLETMTAA 257 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 I S+G NAD + K + E + + + +S V G N L + Sbjct: 258 PIISYGIKGNADLKASKIQLHEEGTSFNMSISNESCSVSMKMAGTFSVYNALAAAAAAYV 317 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + ++LS GR +R + + ++ +VL I Sbjct: 318 SGIPLQAIGESLSNMDGVAGRFERVELEEDFHVIVDYAHTPDS-------LKNVLETIKE 370 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKD 416 +G+ V+G G ++ V+L+ + ++ Sbjct: 371 FAKGKVSVVVG----CGGDRDKTKRPKMAAIAEELSDFVYLTSDNPRSEDPVSILKDMES 426 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + S + E D ++ I+ +V+++ K Sbjct: 427 GMKGSSYKVIVERRDAIYEAIRQ-AKKDEVILIAGKG 462 >gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 93/479 (19%), Positives = 157/479 (32%), Gaps = 48/479 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M DL++ +Q I ++ I DSR + A+KG DGH FI A Sbjct: 1 MI--MNLEDLIKKVQILDILGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFIDAA 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 V +GA VV N I V+D AL +LA K +I ITG+ G Sbjct: 59 VAQGAAAVVCNA--FPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLIGITGTNG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGI 164 KT+ +L + A I + P + V+ Sbjct: 117 KTSVTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEAVEAGCEY 176 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S G + T + IA T I+ HL E K F+GL Sbjct: 177 AFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGLNPDAVAI 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N DD +++ + A T S+ AD+ + + + + + Sbjct: 237 TNLDDKNGKIMLQNTKA----TRKSYALKTMADYHGKTTETDFNGMLLNFDGKEFWTTLT 292 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N+L+ I D +KA+S+ +GR + + F Sbjct: 293 ----GRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKSDGGIFFVID--- 345 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ + +++I E V G GE Q+ ++ ++ + + + Sbjct: 346 -YAHTPDALDNILDSINEIRTKNERLIT-VFG---CGGERDQTKRPEMGKISTRKSTLTI 400 Query: 405 WLS--------GFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 S G + ++ + + Y D+V+V K Sbjct: 401 ITSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKDIVLVAGKG 459 >gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] Length = 480 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 50/456 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 V G+SI+S+++ + FF +KG + D +DFI A+ + LV+ + A+I + Sbjct: 13 KVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSATID----KI 68 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--------------S 131 V+DV AL + + +IA+TG+ GK++ + Sbjct: 69 IYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGV 128 Query: 132 SIKKTYACIGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 I I + R ++++ FE S G + ++ + Sbjct: 129 EIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFE--ASSHGLNQARLGEIKVN 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IA T+ + HL E AK ++F G + + D Sbjct: 187 IACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIEFIKDYLLNHNI 246 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + GK D Q+ K + + + IG A N+L+ + Sbjct: 247 KFITVGK--KGDVQITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASNLLIAALSIHY 304 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D + ++ L+ P +GR +R ++ ++ +K Sbjct: 305 IGCDFNKIVEILTQVKPVKGRMERIDNTNIFVDYSHTPDALEKALTELKNI--------K 356 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419 + + I V G G L ++ V ++ + + + Sbjct: 357 LRDSKLIVVFG----CGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEIIS 412 Query: 420 RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 Y E + + ++L D++++ K Sbjct: 413 CIEKADYMEIANREEAIKYGINNLKQDDILLIAGKG 448 >gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 491 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 84/484 (17%), Positives = 151/484 (31%), Gaps = 54/484 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +LL + + G +D+ + P + A+ G G + + A+ + Sbjct: 1 MKLSELLYGHDHQVLHGDQDTPITSGPCLDADRVTPGSLYVALPGHRAGGPEALGEALAR 60 Query: 64 GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 GA V+V A V V D A ++ ++A+TG+ GK Sbjct: 61 GAAAVLVEGPDPAGHRPADTGACVVRVPDARIATALVSARYHGEPGRAMDVVAVTGTNGK 120 Query: 120 TTTKEMLTI--ALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------- 160 T+ M LS + S G P+ + R + Sbjct: 121 TSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSVLSTPESPDLQYLLACMRDRG 180 Query: 161 -DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 D + E + +G + + V T + HL + +E AK +F+G Sbjct: 181 GDSVVLE--ATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTRAKMLLFQG--- 235 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + + + + A AL + ++ +AD++ S + + G+ Sbjct: 236 ---MCRRAVVNADDPVGAAIPALMPGAVTTYAVDADADYRATDLVVDSSGTRFVLHHDGR 292 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 G N L + +L D+D + AL GR + + Sbjct: 293 KYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEHFGTPEGVSVI 352 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 Y +P S+ + + +P VL G+ + + E+ + Y Sbjct: 353 VD----YAHSPDSLDKVLCTIRGFAPRR------VLTVFGCGGDRDTTKRARMGEIAATY 402 Query: 400 NISHVWLSG----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV- 449 + V S A+ D + I G SS GDVV+V Sbjct: 403 SDLCVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLVA 462 Query: 450 -KSS 452 K S Sbjct: 463 GKGS 466 >gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. novicida U112] gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella novicida U112] gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] Length = 479 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 137/474 (28%), Gaps = 49/474 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ ++ + +DSR + AF A+KG DG+ +I + K Sbjct: 1 MKRINQILKFLDIKTLSQN-NFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122 G LV+ ++ VF + ++ L+ LA K II ITG+ GKT+ Sbjct: 60 GVSLVLTDSHQFEDQK----CVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + E+ Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYYKKYQNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + + +A+ + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + + + K K + Sbjct: 229 VNIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L P +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + + ++ S + ++ Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +K + + + F + GD++++ K Sbjct: 398 DNNRFESIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKG 451 >gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Treponema denticola ATCC 35405] gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Treponema denticola ATCC 35405] Length = 532 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 73/505 (14%), Positives = 141/505 (27%), Gaps = 59/505 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-----------APQEAFFAIKGP 49 M + + ++AI+ + + +N + DSR + AFFA+ G Sbjct: 1 MEYTKSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGI 60 Query: 50 HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 H DG FI A++ GA + D+ + I V+DV ++K++ T Sbjct: 61 HTDGKKFINSAIENGAVCIFYEGDL-NNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 119 Query: 110 --IIAITGSVGKTTTKEMLTI---ALSSIKKTYACIGSYNNHIGVPLTLARMPV------ 158 +I +TG+ GK++T + ++ + + +P + Sbjct: 120 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQ 179 Query: 159 ---------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + + E L V V + HL IE+ Sbjct: 180 LRLAQMRDSGCSYAVVEASSHGLSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 239 Query: 210 KAE------IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 KA G +NY+D + K + + Sbjct: 240 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLF 299 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDTAIKALSVF 320 + E+S ++ + I+ + I + Sbjct: 300 AKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEK 359 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P K +++G + Y P+S + + G+ I++ G Sbjct: 360 LPLVKPVKGRMMLIDEGQDFEVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGS--- 416 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVH---YSE 428 GE + + +LY+ V L+ + P Sbjct: 417 GGERDVKKRPEQGRIAALYS-DIVILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIP 475 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 S D V++ K Sbjct: 476 DRPSAIKKAFSLAGKNDAVLLLGKG 500 >gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 EDL933] gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str. EDL933] Length = 495 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 66/478 (13%), Positives = 137/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ A+ G + +PV + + L+ LA + + + Sbjct: 61 AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165 T +A S G+ + + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] Length = 532 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 84/496 (16%), Positives = 159/496 (32%), Gaps = 62/496 (12%) Query: 5 WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T +LL + + ++GI DSR + + F G DGH F+ A + Sbjct: 1 MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 +GA ++V ++ IG V V D L+ LA A R ++ ITG+ GKT Sbjct: 61 QGAVVIVATKEV--EIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118 Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165 TT +L S+ + + P L V + Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + + +AV T + H+ + AK ++F + Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + S + +FG K+AD + ++ + V+ ++E+ Sbjct: 239 VVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISS 298 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G H N+L + + + A ++ ++ + GR + Q F ++D + Sbjct: 299 GLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVD--EEQPFAVIVDYA 356 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + S +L + G R I V+G G + ++ Sbjct: 357 HTPDALS-----RLLDTVRECGPRRIITVVG----CGGDRDRGKRPVMAKIAAAKSEVCI 407 Query: 406 LSGFHVLA------LKDALP----------------------RSIHVHYSETMDGLFLFI 437 + + + L D L V + Sbjct: 408 FTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAA 467 Query: 438 QSSLVDGDVVVV--KS 451 + +GD VV+ K Sbjct: 468 VAMGEEGDAVVIAGKG 483 >gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei VT8] gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter aquaeolei VT8] Length = 494 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 74/458 (16%), Positives = 148/458 (32%), Gaps = 45/458 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++G+ DSR + P +AF A+ G ++ A+ GA +++ ++ Sbjct: 21 DVTIHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESEQERQCHERHG 80 Query: 84 PVFG-VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V + L ++A +I +TG+ GKT+ + ++ L C Sbjct: 81 ALIVPVVGLRARLGRIADRFFEHPSRHLRVIGVTGTNGKTSVTQYISQLLRE--TGTPCG 138 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRP 184 G+P ++ + + +S + + Sbjct: 139 LLGTLGYGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDNLTM 198 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV T + HL +E AKA +F E ++ DD F L + Sbjct: 199 TGAVFTNLTRDHLDYHGSMEAYGEAKARLFLREELHFSVINF-DDPFGRQLYGQLEGQCD 257 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + YS + + L+++ + V Q ++ +G A N+L L V Sbjct: 258 RVRYSLHE-AQTELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAALATVL 316 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L V+ A+ + P GR R + G ++D ++ + + + L + Sbjct: 317 TLGVPVERAVSVVRELSPPPGR--LERFTGSTGKHVVVDYAHTPDALA-----NALEALR 369 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 PH GR I V G G + +V ++ + + Sbjct: 370 PHTRGRLICVFG----CGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDIS 425 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + D+V++ K Sbjct: 426 AGFTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKG 463 >gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] Length = 486 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 92/484 (19%), Positives = 154/484 (31%), Gaps = 70/484 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFIL 58 T +L P V G+++DSR + P F A+ G DGHDFI Sbjct: 1 MTLEELFAPFGLK----APPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIP 56 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGS 116 A+ KGA VV ++ SL +P V D AL LA ++ ITGS Sbjct: 57 EALAKGAIAVVGEREL-----SLPVPYLRVGDAREALAHLARHFFGEPDRKLALLGITGS 111 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---------------- 160 GK+TT +L L + +K A + + +G Sbjct: 112 KGKSTTASLLHHLLQAGEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQVYGFLREAVER 171 Query: 161 --DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + + E+ SH ++ + L ++ HL E +AKA + E Sbjct: 172 GLEAAVLEV-SSHALALKRVEGLSYRIGVFVSFYPDDHLDLHGTAEAYFAAKALLV---E 227 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 ++ LN + L + H L + ++ E + Sbjct: 228 RSHLAVLNTRLPHLKRLLPRPHLL---------FGPGGEVWGEGLREGEEGLRFTLHTPW 278 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 S E +G + N L ++ ++ L+ F GR + F Sbjct: 279 GSGEAFLPMLGRYNLDNALAASAAALAYGLSLERVLQGLATFRGVPGR---MEVVQRKPF 335 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +ID ++ L + GR + V+G GE D+ V + Sbjct: 336 RVVIDFAHTGKSLE-----EALKTLRATTRGRLLLVVGAA---GERDPRRREDIGRVAAR 387 Query: 399 YNISHVWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV 449 + + A+ +AL ++ S +GD V++ Sbjct: 388 LADKTFFTEEDHRTEDLQAILEALAKAAREEGGLYELIPDRKEAIFCALSEAREGDTVLL 447 Query: 450 --KS 451 K Sbjct: 448 AGKG 451 >gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] Length = 495 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 75/458 (16%), Positives = 149/458 (32%), Gaps = 42/458 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 + + +DSR I + F AI+G DG FI A+ +GA V+ D + G + Sbjct: 23 ASLVITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIE 82 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 ++PV + ++ L+++A +I +TG+ GKTT +++ L + A Sbjct: 83 YREAVPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAA 142 Query: 139 CIGSY-----------NNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRP 184 +G+ N G L + D L S G ++ + Sbjct: 143 VMGTTGNGFLNALEPAANTTGNALQIQATLWDLAERGAQYTALETSSHGLVQGRVKKLNF 202 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 203 VAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGV 262 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + ++ + + + E+ IG A N+L+ + Sbjct: 263 SLVTKPDTAQAIWARQ--VEYAESGITLNFDSSWGEGELHAPLIGEFNACNVLLAFATLL 320 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + P GR + ++ + +A L + Sbjct: 321 SLGFEKSALLATAPQLRPVIGRMELFQREQKAKIVVDYAHTPDA-------LEKALRALR 373 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 H G+ A++G G + ++ V L+ + + Sbjct: 374 VHCAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMV 429 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + + D++++ K Sbjct: 430 VGLTHPERAHIEHHRFQAASYALQNAGAQDIILLAGKG 467 >gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 490 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 73/464 (15%), Positives = 140/464 (30%), Gaps = 49/464 (10%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I PQ ++ GISI S+ + FFA KG DGH FI A+QKGA VV V + Sbjct: 17 IIGNPQKWIKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPV--L 74 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +I V + + AL ++ K ++ ITG+ GKT+ +L + + Sbjct: 75 LHKNITYVIVKNSMDALGTISSNFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEK 134 Query: 137 YACIGSYN---------NHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 I + P + + + +S G + + Sbjct: 135 SILISTMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQKRIAGL 194 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 V+T I HL E S K FE L D + Sbjct: 195 LFTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSH---EIIKN 251 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + IY +G K D++++ K+ + + + ++ ++ + + Sbjct: 252 VLAKIYFYGLKKKTDYRIKIMKKNIHGNQLLIDGHKFFTFLIGEFNVSNLLACYATAILL 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + +G+ + G ++D ++N + +K + + + Sbjct: 312 GK------KKEEILQKINTIPPIKGRFEQFISYSGIRIIVDYAHNPD--GIKNLLKAIQE 363 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------H 410 I E + G L + + Sbjct: 364 IKKQEERLICII-----GCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILID 418 Query: 411 VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + + + D++V+ K Sbjct: 419 MKNFRSYLNKDKEDILTIVNRKEAIRTAIQMAREKDIIVIAGKG 462 >gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola At-22] gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Klebsiella sp. 1_1_55] gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola At-22] gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Klebsiella sp. 1_1_55] Length = 495 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 65/478 (13%), Positives = 140/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A++G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ A G + +PV + + L+ LA + + + + Sbjct: 61 AAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + ++ + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGNGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467 >gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] Length = 503 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 72/483 (14%), Positives = 138/483 (28%), Gaps = 47/483 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M P T L + +N + DSR++ + F A G DG FI A Sbjct: 1 MTP--TLSQLQLQLG---------VPLNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQA 49 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 + +GA V+ + + ++P G+ D+ LA A +I +TG+ G Sbjct: 50 ILQGAAAVIWDAHNFVWDKAWTVPNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNG 109 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 KT+T + AL K A IG+ N L + + L L Sbjct: 110 KTSTCHWIAQALGDAGKKCALIGTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQA 169 Query: 179 THLV--------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + R +A++T ++ HL +E A+ K +F+ + Sbjct: 170 AAMEVSSHALAQGRVNGVRFDVALLTNLSRDHLDYHGDMESYAATKRRLFDWQSLNYAVI 229 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D EL Y + + K Sbjct: 230 NLDDAFGAELALQLVDKTVEVIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRS 289 Query: 285 HH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 N+ LG + +L T A++ + + R + Sbjct: 290 SWGAAQLSTQMVGRFNVSNLLGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQP 349 Query: 340 TLIDE-SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +I + ++ + + G+ I V G G + ++ Sbjct: 350 LVIVDYAHTPDALEKVLLALCEAAQGTKAGGQLICVFG----CGGDRDRGKRAMMGRVAE 405 Query: 399 YNISHVWLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV- 449 ++ + + + + + + + D+V++ Sbjct: 406 KFADRCIVTSDNPRSEDAQQIIGEVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIA 465 Query: 450 -KS 451 K Sbjct: 466 GKG 468 >gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora ATCC BAA-2158] Length = 495 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 141/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR+ A + F AIKG DG FI A+ +G Sbjct: 5 NLRDLL----APWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A+ G + +PV + + L+ LA + A + I + Sbjct: 61 AAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ LA + Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + A T ++ HL + SAK +F + I Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQVGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L+ A+ + + + + + K + ++ + Sbjct: 241 ADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + S P GR + + Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L+ H +GR + G G L ++ V Sbjct: 361 TPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + GD+V+V K Sbjct: 410 VITDDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKG 467 >gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora CFBP1430] gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia amylovora ATCC 49946] gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Erwinia amylovora ATCC 49946] gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora CFBP1430] Length = 495 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 142/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR+ A + F AIKG DG FI A+ +G Sbjct: 5 NLRDLL----APWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A+ G + +PV + + L+ LA + A + I + Sbjct: 61 AAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ LA + Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + A T ++ HL + SAK +F + I Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQVGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L+ A+ + + + + + K + ++ + Sbjct: 241 ADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + S P GR + + Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L+ H +GR + G G L ++ V Sbjct: 361 TPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADVV 409 Query: 405 WLS-----GFHVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ G A+ L + GD+V+V K Sbjct: 410 VITNDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKG 467 >gi|228933512|ref|ZP_04096365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826241|gb|EEM72021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 270 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 120/279 (43%), Gaps = 14/279 (5%) Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT I +HL +EIA AK EI +GL + G N D+ L ++++ Sbjct: 1 MITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKTSSVNC 56 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG+ D + ++ +V HG + + +G Sbjct: 57 KTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVG-----Q 111 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 K R++ + FT+I++++NA+P+SMKAAI L +++ + Sbjct: 112 FYKVPTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAYK 171 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424 + I V+GDM E+G+ ++++H ++ ++L+ NI +V+ G + + ++ V Sbjct: 172 KK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 229 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + + + DVV++K S +++ Sbjct: 230 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEQIVQK 268 >gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36] gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36] Length = 503 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 155/475 (32%), Gaps = 49/475 (10%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 + + + I + VN + IDSR + + F AI G DG FI A++ GA V+ Sbjct: 16 CRVLSLQAWNIDLELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLK 75 Query: 71 NTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 + D A G + P+ + AL+ LA +I +TG+ GK+T + Sbjct: 76 DADNEAEHGHIDYIDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGKSTITQ 135 Query: 125 MLTIALS-------------SIKKTYACIGSYNNHIGV---PLTLARMPVDVDFGIFELG 168 ++ ++ + G+ ++ + E+ Sbjct: 136 IIANWVTLLAGKAGVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEV- 194 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G I+ + + +A+ T + HL ++ A AK +F+G LN D Sbjct: 195 -SSHGLIQGRVNALDFDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAV--KHKILNVD 251 Query: 229 DSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D++ ++ + A+ A + + E++ + Sbjct: 252 DAYGKMWAQQWSDAIQFSVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGDGTLQCSL 311 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N++ + L D+D ++ GR + ++ A + + Sbjct: 312 IGEFNASNVVAACASLLALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAACVVDYAHTPD 371 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A L + H EG+ + G G + L ++ ++ Sbjct: 372 A-------LEKALQALRVHCEGKLWCIYG----CGGDRDTGKRPLMAQVAEQFADMAVIT 420 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L + H + D+++V K Sbjct: 421 DDNPRTESAAAIVTDMLNGLAKPDAAHVIHDRRRAIQWAMEQSSADDIILVAGKG 475 >gi|70727423|ref|YP_254339.1| hypothetical protein SH2424 [Staphylococcus haemolyticus JCSC1435] gi|68448149|dbj|BAE05733.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 686 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 86/486 (17%), Positives = 183/486 (37%), Gaps = 39/486 (8%) Query: 4 LWTFHDLLQAIQGHS--IGIVPQGFVNGISI-----DSRSI----------------APQ 40 + T + I G +N +S+ Sbjct: 1 MLTIKKIFNIIGGELKDAHNKEANEINDFETIYKFVNSKKTAYFSPNKETWSRELGRNKN 60 Query: 41 EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 DG+D + + G +++ + ++ + IP V+D + A +LA+ Sbjct: 61 AL---------DGNDLVNK--ENGEIGLIITENYISDL-KFEIPQIIVEDSVQAFKQLAI 108 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R + +IAITGS+GK++T+ ++T L + N + + ++ + Sbjct: 109 YIRNQYTNPVIAITGSMGKSSTRMLITSLLGDYNVLENRGNN-NVRAAIYNNMLKLIKNP 167 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEK 219 DF + E M+ + + + ++P IA+IT I AH S F +++IA K IF+G Sbjct: 168 DFAVIETSMNAINYLENTSTFLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRIFDGLSST 227 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 TG +N D + + L K+H + + ++ S + Sbjct: 228 TGVAIINKDTLYADYLIDKAHENASNVLTYSINKDAKADLTVDNIKYNKGSIELSITNQE 287 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + ++ I+++ + ++ + L+ F P Sbjct: 288 NKSEIYRLNTISEGMVSNTLASILTLKSLNLPIKQELLNDFKPFSKILALKEIHAKTHKL 347 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 TL+D+++NA+ +M AI + + G +I +G + ++G S H+ L E L Sbjct: 348 TLLDDTHNASLPAMINAIRAFNSQTKFYSGHKIIAIGKISDLGRKSNETHLKLVEELENS 407 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGFY 458 N ++ + + + + R+ ++ + + L ++ + + ++KSS F Sbjct: 408 NADYILCKDNELRQVVNKV-RNKNITWYPNKELLINDLKYLCNEDSLTLLKSSVTGTDFP 466 Query: 459 RLINLL 464 + L Sbjct: 467 EIAKNL 472 >gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] Length = 489 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 160/473 (33%), Gaps = 43/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL A+ + ++ I+ DSR + P F A+ G DG FI AVQ GA Sbjct: 5 LSTLLAAVG--LPALPGNPEISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 V+ D + P+ + AL +A ++AITG+ GKT+T + + Sbjct: 63 AVLAPADTQWPTDVPACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFM 122 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMS 170 + A IG+ +++ + + L S Sbjct: 123 RQIWALQGFKAAAIGTLGLTGAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEAS 182 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + + A T + HL IE +AK ++F+ L I D Sbjct: 183 SHGLEQGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADM 242 Query: 231 FFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L+A A +L + + ++ G++ V+ G Sbjct: 243 DAQTLQAICAIAARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPIPG 302 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A N+L+ + + + A++ + L GR +R N +D ++ + Sbjct: 303 RFQADNVLLAVALAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACA-YVDYAHTPD 361 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + +L+ + PH G+ I VLG G S L ++ ++ Sbjct: 362 ALA-----RLLASLRPHARGKLIVVLGA----GGDRDSGKRPLMGQEAVKGADIAIITDD 412 Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +K P+++ + S L DV+VV K Sbjct: 413 NPRTENPASIRADIKTGAPQALEI---ADRKQAIAEALSMLKADDVLVVAGKG 462 >gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Serratia symbiotica str. Tucson] gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Serratia symbiotica str. Tucson] Length = 495 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL G + P+ + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----GPWVPTAPRRALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A G++ +P+ + + L+ LA + + + + Sbjct: 61 AAVIAEANGQAEDGAIVEMHGVPIIYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A S G+ + + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLAEQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV + ++ HL + +AK +F G + I Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAGHDVGQMIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L A+ + + + + + + + E+ Sbjct: 241 ADDQVGQHWLSKLPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFSSNWGDGEIA 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L +D ++ S P GR + + Sbjct: 301 SQLMGAFNVNNLLLALATLLALGYPLDKLVETGSRLQPVCGRMEVFNAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H +GR V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCQGRLWCVFG----CGGDRDKGKRPLMGGIAEQFADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + + L + + DVV+V K Sbjct: 410 VLTDDNPRTEEPQAIINDILAGLLDAGQALVIPGRAEAVTSAIMQAQEQDVVLVAGKG 467 >gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anoxybacillus flavithermus WK1] gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Anoxybacillus flavithermus WK1] Length = 488 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 156/474 (32%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LLQ + + + I +DSR + F IKG DGHDF Sbjct: 1 MKLQTLLQHLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFAEQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + +L +PV V+D AL LA A + + +I +TG+ GKTTT Sbjct: 56 AVARGAVAVVAEKPLALPVPVIYVNDSRRALAVLADAFYGQPTHQLHLIGVTGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 ++ K IG+ N IG V + R VD I + Sbjct: 116 THLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKMVDAHVDIVAME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226 +S H +AV T + HL +E +K G Sbjct: 176 VSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQLGNRFDHQRPKF 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + T+ ++G +D ++ + + + ++ ++++V Sbjct: 236 AILNADDAASEEYKKSTAATVVTYGIHHKSDIMAKQIEITTSGTTFQLITPIETVQVKTK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + + + T ++A++ GR + FT+I + Sbjct: 296 LIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVPGR---FEVVDAGQPFTVIVDYA 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + +VL I + R V+G G L +++ Sbjct: 353 HTPDS----LENVLQTIRQFAKKRVFVVVG----CGGDRDRTKRPLMAQIAVKYSDVPIF 404 Query: 407 SGFHVLA-----LKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + + + V + D++++ K Sbjct: 405 TSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDIILIAGKG 458 >gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] Length = 496 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 144/475 (30%), Gaps = 38/475 (8%) Query: 7 FHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL+A+ G G +G + + D+R++ P AF AIKG +DGH + GA Sbjct: 3 VEDLLRAVPSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 L+VV + + + F V A LA R + ++A+TG+ GKTT Sbjct: 63 KLMVVE-VLPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTTIS 121 Query: 124 EMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDV---DFGIFEL----------GM 169 +++ L + IG+ + + E+ Sbjct: 122 SLISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALIEA 181 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNY 227 S A+ T + HL +E A AK+ G + G Sbjct: 182 SSHALALGRLWATDIDCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEGPRLA 241 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + + ++ + + V Sbjct: 242 IINADDPYASIMMQATSADVLTYSLEDPKASAYADQLAVQDGNQTFRLHYRNQTYQVVSP 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + M + + V + G+ R L Q F ++D ++ Sbjct: 302 MLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQRLDLGQEFQVVVDFAHT 361 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + VL ++ R + ++G G ++ + + Y+ + + Sbjct: 362 PDAIE-----RVLQELKAQSPKRLVTIIGHSG--GNRDSGARPEIGDKVFEYS-DWIIFT 413 Query: 408 GFH------VLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 + + + V E ++ S GD++V K S Sbjct: 414 ADNPRHEPVAKICAELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGKGS 468 >gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia intermedia ATCC 29909] gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia intermedia ATCC 29909] Length = 471 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F AI G DG +I A+ +G V+ D VA S+ +PV Sbjct: 2 TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + ++ L+KLA + ++ +TG+ GKTTT ++L ++ + + Sbjct: 62 YLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F + I D+ L A+ + Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDEVGRRWLGQLPQAVAVSMEGQV 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 N + + + ++ +G N+L+ L + L Sbjct: 242 PTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLLSLGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + P GR + + + +A L+ H +G Sbjct: 302 LAQLLATAPNLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H + DVV+V K Sbjct: 411 AGHALAIHGRAEAVTSAIMQAKEEDVVLVAGKG 443 >gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] Length = 519 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 80/475 (16%), Positives = 147/475 (30%), Gaps = 46/475 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + + IG V + ++ +S+DSR + P FFA +G GH +I AV +GA +V Sbjct: 26 LAEWV---PIGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIV 82 Query: 70 ------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 V+ + + +IP+ + D+ L +A L+ ++ +TG+ GKT+ Sbjct: 83 YDPVIPVSPVIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTS 142 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------ 169 L AL + IG+ + L + + + E Sbjct: 143 VSHFLAQALHRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVL 202 Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + V +IA+ T ++ HL + +AK +F + Sbjct: 203 EVSSHALGQGRVSGVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQPGLRHAVINGD 262 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + L + + N L K ++ + + +Q E Sbjct: 263 DAAGRAFLANLPPEVKAISYG----LMNPQASLHTGKLRCDRHGIAMTIQSAWGEGQLTC 318 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 N L + L A +AL R + L+ Y Sbjct: 319 PLLGRF-NAYNLLAALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGEPLLVVDYA 377 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + L GR V G G L + V L+ Sbjct: 378 HTPDALEQVLRSLRA-HLGPGGRLWCVFG----CGGNRDRGKRPLMGAAAERLADFVMLT 432 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V+ + D+V++ K Sbjct: 433 DDNPRNEDPIQIIVDILSGIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKG 487 >gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 134 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +L+ + +G G+S DSR I P + F A+ GP +DGH+++ KG Sbjct: 1 MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123 A +V ++ + ++P V D AL +L R + A+TGS GKTT K Sbjct: 59 AVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114 Query: 124 EMLTIA 129 EML Sbjct: 115 EMLASI 120 >gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 496 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 105/477 (22%), Positives = 203/477 (42%), Gaps = 36/477 (7%) Query: 4 LWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQ-----EAFFAIKGPHY----- 51 + + H LL + GH + + + S + F + Sbjct: 1 MTSIHSLLVDMDGHYLKKYGDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNR 60 Query: 52 ------DGHDFILHAVQK----GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101 DG+ + K G ++V ++ S++ P F V+D L +L+ Sbjct: 61 KVVRWRDGN---EQIIGKENWFG--VIVTEKPIMD--PSVTTPQFIVEDSWKFLLELSAK 113 Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 R ++AITGS GKT+T+ M+T L K ++N VPL ++++ + D Sbjct: 114 LRSCFVNPVVAITGSAGKTSTRMMITHLLQEEKVLENRG-NHNVRFAVPLYMSKLLSNPD 172 Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 E+ ++ L + +P IA++T+I AHLS+ + +A KA+IFEGL++ Sbjct: 173 VLNLEVSVNALNSYDTGSMSNLIQPDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQ 232 Query: 220 TGTIFLNYDD--SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G +N D F +L + + K + + +++ Q E + V Sbjct: 233 DGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRAVFVKQISQKREYCEVLVSFF 292 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQ 336 G+ + + M N L L + L ++ IK F P + + + Sbjct: 293 GEDILLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETG 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 FT ID+++NA+ SMK AI+ I P +G ++ +LG + ++G+ ++ H + E L Sbjct: 353 TDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEEL 412 Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + +H++ G H L + + + + +++ L +++ L++ +V+ K S Sbjct: 413 NQSAATHIYGYGEHFKLLFEEGQKIDDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 469 >gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cupriavidus metallidurans CH34] gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Cupriavidus metallidurans CH34] Length = 515 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 92/497 (18%), Positives = 151/497 (30%), Gaps = 59/497 (11%) Query: 1 MN--PLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HY 51 M PL QA + + G D+R + P + FFA G Sbjct: 1 MTRQPLLPLEVSAQASNALAWLRTHAPENAQLTG---DTRRLQPGDVFFAYVLGNERLAT 57 Query: 52 DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKAT 109 DG I A+ GA +V D A +P V + +A T Sbjct: 58 DGRPHIDKAIAAGASAIVYEADNFAWPHDDRVPHLAVSHLHELAGPIAAGWYGIAACNLT 117 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---- 165 I +TG+ GKT+ + L L A IG+ + G P L + Sbjct: 118 IAGVTGTNGKTSCSQWLARLLQMAGTRCATIGTLGS--GFPDALKLTGFTTPDAVQLQAS 175 Query: 166 ------------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 + +S G + +AV+T + HL + E +AKA + Sbjct: 176 LAELHDAGARAVAMEVSSHGLEQGRVAGTGFAVAVLTNLTQDHLDYHGTMAEYEAAKARL 235 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--------KNADFQLRKWKQ 265 F + D LL + + A+ + +G + + + Sbjct: 236 FAWDGLKAAVINRDDGMGQRLLASNAVAVSAPQVIEYGIDGKAGASVARGQWLRATGVRA 295 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + V + +V IG N+L LG D AI AL P +G Sbjct: 296 TGAGTAFHVDGSFGTADVTTPMIGAFNVSNLLAVLGAALAQGVTWDAAIDALRRLTPVDG 355 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + Y P ++ ++ L ++ +G+ V G G Sbjct: 356 R---MELFGGHDAPLAVVD-YAHTPDALVQTLTALRPVAQARQGKLWCVFG----CGGDR 407 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLF 436 + L ++ V L+ + A+ D + E L+ Sbjct: 408 DATKRPLMGGVAERLADEVVLTSDNPRSEDPREILEAIADGMSDRARAALIEDRAAAILY 467 Query: 437 IQSSLVDGDVVVV--KS 451 DVV+V K Sbjct: 468 AIKHAAPADVVLVAGKG 484 >gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 495 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 150/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++V A+ G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIVEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia mollaretii ATCC 43969] gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia mollaretii ATCC 43969] Length = 471 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 71/454 (15%), Positives = 141/454 (31%), Gaps = 45/454 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G +V D VA S+ +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + ++ L+ LA + ++ +TG+ GKTTT ++L ++ + + Sbjct: 62 YLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + A + ++ +N DD ++ ++ S Sbjct: 182 NLSRDHLDYHGNM-ASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMESQ 240 Query: 251 GKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + RK + + + ++ +G N+L+ L + L Sbjct: 241 VPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLSLGY 300 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + A P GR + + + +A L+ H + Sbjct: 301 PLAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCK 353 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419 G+ V G G L ++ V ++ + + L Sbjct: 354 GQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLL 409 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H DVV++ K Sbjct: 410 DAGHALAIHGRAEAVTSAIMQAKADDVVLIAGKG 443 >gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] Length = 520 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 65/467 (13%), Positives = 133/467 (28%), Gaps = 43/467 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + ++ DSR++ P + F A G +D + I A+ G V+ + I Sbjct: 22 SVKIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEKQGFSWKPEWKI 81 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P G+ + K+A ++ ITG+ GKTT + ++ + A IG Sbjct: 82 PNLGISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTAIIG 141 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPH 185 + G P L ++ + S G + Sbjct: 142 TLG--HGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEFS 199 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 IAV+T + HL ++ A+AKA++F + + EL + + Sbjct: 200 IAVLTNLTRDHLDYHGSMDAYAAAKAKLFFWEGLQHAVLNLDEVLGVELSQQLAWKDVSI 259 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-----SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Y F + + K + N L Sbjct: 260 IGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNLL 319 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID------ESYNANPASMK 354 +++ L A A++ + R +I ++ N ++ Sbjct: 320 AVLATLLASNVDLDDAITALQQVQPIPGRMEKLGGGDQPIVIVDYAHTPDALNEVLTGLR 379 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409 ++ + + V + G L ++ + V ++ Sbjct: 380 ETLAGTRMKKRIRKNQAKLVC--VIGCGGDRDRGKRPLIGEIASHLADEVIITSDNPRNE 437 Query: 410 HVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + H GD+V++ K Sbjct: 438 NPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDIVLIAGKG 484 >gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] Length = 178 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 8/153 (5%) Query: 1 MN-PLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M P W ++ QA++ + P + GI DSR I F ++G + DGH FI Sbjct: 18 MKLPFW---EVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIE 73 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118 A+ G D+V + +PV V D L A+ +LA + + +IA+TGS G Sbjct: 74 SAMANGCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNG 131 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 KTTTK+++ LS TY G+YNN IG+P Sbjct: 132 KTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPY 164 >gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella kingae ATCC 23330] Length = 491 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 83/447 (18%), Positives = 153/447 (34%), Gaps = 39/447 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91 DSR I P + F A +G + DG ++I A++KGA V + D + IP + ++ Sbjct: 29 DSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPIAEL 88 Query: 92 LGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 LA + II +TG+ GKT+ + L A+ ++ AC G Sbjct: 89 RQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAIIGTVGNGY 148 Query: 150 PLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTIA 193 L + + +S G +F + V A+ T + Sbjct: 149 WGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTAIFTNLT 208 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL + +EE AKA +F I + D+ +L+ +YS+G + Sbjct: 209 RDHLDYHNSMEEYGEAKARLFHWQGLQNAIINSDDEFGAKLVAE--LKQSSLHVYSYGFN 266 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 ++AD ++ ++ ++ + +Q + V +G AQN LG + A Sbjct: 267 EHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEGYAFQAA 326 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 +KAL+ GR + +A ++ + E + Sbjct: 327 LKALAQIRAATGRMDCIIRENKPLVVVDYAHTPDALEKALSTLREIQQ-----PESQLWC 381 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYS 427 V G G L ++ V ++ + + D LP + Sbjct: 382 VFG----CGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALV 437 Query: 428 E-TMDGLFLFIQSSLVDGDVVVV--KS 451 + + D+V++ K Sbjct: 438 QVDRQTAIEQTIAQAAPQDIVLIAGKG 464 >gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS) gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 497 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 72/468 (15%), Positives = 147/468 (31%), Gaps = 45/468 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T Sbjct: 13 WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72 Query: 78 IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 G ++ + + ++ LA II ITG+ GKTT +++ + Sbjct: 73 HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177 + A +G+ N L I + +S G I+ Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234 V +IA+ T + HL +E+ SAK +F + I Y + + Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L K +Q + ++ + + + IG Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVT 312 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L++L + L + I P +GR + + F + +A Sbjct: 313 NLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA------ 366 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 L+ I H + + G G + ++ V ++ + Sbjct: 367 -LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNE 421 Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++++ K Sbjct: 422 KEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 469 >gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. PCC 7002] gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp. PCC 7002] Length = 499 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 167/481 (34%), Gaps = 47/481 (9%) Query: 4 LWTFHDLLQAIQG-HSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + LL+ + S+ P Q V G++ +S+++ P + F + G DG +F A Sbjct: 1 MMQLGALLKQVSAIESLADHPMLQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFWQGA 60 Query: 61 VQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 ++ GA VV+ + + + V V D + A ++A + ++ +TG+ Sbjct: 61 IEAGAIAAVVSPEALEKFPATKGECVIPVADPVIACAEIANLFYEKPTASLKLVGVTGTN 120 Query: 118 GKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTLA-------RMPVDVD 161 GKTTT ++ L + + T P + + Sbjct: 121 GKTTTSHLIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNT 180 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+ L + R + +AV T + HL +E+ AKA +F G Sbjct: 181 HAVMEVSSHALHQNRVKGC--QFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEYCHG 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N D+ + + L H LG K + AD + + + ++ ++ Sbjct: 239 RAVVNLDNPYGDRLA---HKLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPMGTV 295 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E +G +N++ +G L D++ I L F GR +R A +Q + Sbjct: 296 EFTSPLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVI 355 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + ++L P + I V G G L ++ Sbjct: 356 VDYAHTPDSLE-----NLLKASRPFIAKKMICVFG----CGGDRDRTKRPLMGKIAATQS 406 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + + + +P +I GD V++ K Sbjct: 407 DWAVVTSDNPRTEDPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] Length = 486 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 93/475 (19%), Positives = 153/475 (32%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L G S + + ++ DSR P FFA++G DG FI A+ +G Sbjct: 1 MRLSQLFALC-GTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V+V+ + + ++PV D L +A A + I AITG+ GK++T + Sbjct: 60 AAAVIVDQET--ARPDSAVPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTAD 117 Query: 125 MLTIALSSIKKTYAC--IGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LGM 169 L A + VP + D G+ L Sbjct: 118 FLRQLWILQGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVALEA 177 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + V A + + HL +E +AK +F+ + TG I D Sbjct: 178 SSHGLEQHRLDGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNAD 237 Query: 230 SFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 E A + S G++ + S Q + E+ Sbjct: 238 MDSETFSALQDIAARRSLKLRSVGRNGTTLRLIEARPTPSGQILRLALHGEELPEISLSL 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 G A N+++ + AD + L GR +R N + Y Sbjct: 298 PGRFQADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCERAVALPNGAAAYVD---YA 354 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P ++ VLS + PH GR + V G G L ++ ++ Sbjct: 355 HTPDALDC---VLSSLRPHTTGRLVVVFGA----GGDRDRGKRPLMGAVAARMADLAIVT 407 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + A P ++ + +L GD++VV K Sbjct: 408 DDNPRTEEPSSIRSEILAACPDALEI---ADRRSAIAAGLEALQPGDILVVAGKG 459 >gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 495 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium papyrosolvens DSM 2782] gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium papyrosolvens DSM 2782] Length = 487 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 152/477 (31%), Gaps = 55/477 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L++ + I + V+ I+ DSR F ++G DGH +I A++ G Sbjct: 3 LKELVKDLNIKEINGSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIENGTK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124 +V + I DD L + A SK +I ITG+ GKTTT Sbjct: 63 AFLVQKHVDV---PEGITTIETDDTRFGLAAVSDAFFGHPSSKLNLIGITGTKGKTTTTY 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFELG 168 M+ L + IG+ N IG + + VD + E+ Sbjct: 120 MVKAILEAAGHNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDMIDNKVDSAVMEV- 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226 S G I V T + H+ + +EE +AKA++F+ K + Sbjct: 179 -SSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMCNKAVINIDS 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 L + ++G S +D + + ++ ++ S+++ Sbjct: 238 EHGRKMAELAE-------GKVLTYGLSSRSDIWASDVIKKTGHTFFKLNSPWGSIDIETD 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L +G ++ +K GR + + N + Sbjct: 291 LQGEFNIYNALAAIGSCCLIPGITLEHVKKGLTKVTVPGRMESVKTDGNYSVLIDYAHTP 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 ++ VL + GR +++ G G +S + Sbjct: 351 DS-------LEQVLKTVKEFAHGRVVSLFG----CGGDRDKGKRPAMGEISGNIADFTII 399 Query: 407 SGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + + F + DGD++++ K Sbjct: 400 TSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKG 456 >gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme DSM 15981] gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme DSM 15981] Length = 498 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 74/469 (15%), Positives = 150/469 (31%), Gaps = 38/469 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D L+ + + + V+ +S DSR + F + G D H FI + G Sbjct: 3 LSDWLEGLDYELLQGSLEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFIPQVEEAGVR 62 Query: 67 LVVVNTDMVASIGSLS--IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122 ++V+ + + ++S + V V D AL L A K + +TG+ GKTTT Sbjct: 63 VIVIERPLEELLKAVSPQVTVLRVKDGRRALALLSAARFGYPARKMITVGVTGTKGKTTT 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE---LG 168 M+ L + K IG+ IG L + D+ E + Sbjct: 123 THMIKAILEAAGKKVGMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADMVEAGCEYMIME 182 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G T + + T I+P H+ + + +N Sbjct: 183 VSSQGIKMHRTDGLFFDYGLFTNISPDHIGP-DEHADFGEYLYYKSRLMTMCKVGLVNRG 241 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D +E + + + G +ADF+ R + +E++++ + + + Sbjct: 242 DEHYEGIIKDASCRLYTYCVAEGDGASADFEARNIRYVAEENFVGTEFDVTGWLSMDVRL 301 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+ L +S+ + + G+ ++ L+D ++NA Sbjct: 302 GIPGLFNVDNALAAMSLCSFMGLDKQRMSHALEHIRINGRMEIVHTSKRCTVLVDYAHNA 361 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +L + + R + V G G + L+ Sbjct: 362 VSMES-----LLGTLRNYHPKRLVCVFG----CGGNRSKDRRYSMGEIGGRMADLCILTA 412 Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++ ++ + + + GD++ Sbjct: 413 DNSRYEKPEDIIADIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMI 461 >gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 495 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] Length = 501 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 79/479 (16%), Positives = 154/479 (32%), Gaps = 49/479 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + ++ G + DSR + +AF A G DG ++ A+++ Sbjct: 8 LNNAAEAVAWLRSRVQGD--------LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQ 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA V+V D + + + + + A +A ++A+TG+ GKTT Sbjct: 60 GAAAVLVEADGLQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163 T L ALS + + +GV R D Sbjct: 120 TAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLA 179 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + S +G + + +A+ T HL ++ AKA++F+ + Sbjct: 180 ACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAAV 239 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D L ++S A Q + E V G S+ + Sbjct: 240 VNIDDAHGARLWAR--LQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRM 297 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G + N+L L + L ++ A++A + P GR ++ Sbjct: 298 NTRLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIVKPGQPLVAVD-- 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P +++ A+ L + +G+ V G G + L + + Sbjct: 356 --YAHTPDALEKALRALQPAARQRQGKLWCVFG----CGGDRDNSKRPLMGQAAQAHADG 409 Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V+++ + + + + +H + DVV++ K Sbjct: 410 VFVTSDNPRSEVPESIIDQILAGMQAGQALHVQADRAAAIAQAIARAEARDVVLIAGKG 468 >gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] Length = 492 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 80/470 (17%), Positives = 143/470 (30%), Gaps = 35/470 (7%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T +LL + I +G++ DSR + P + F A G DG +I A+ + Sbjct: 1 MTTPRELLDQLAAMGIQP------SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALAR 54 Query: 64 GAGLVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120 GA V+ S S V + LA A ++IAITG+ GKT Sbjct: 55 GAVAVLWQPSADFSWDSTLATANLPVAALRPLAGPLAHAVYGHPSEGLSLIAITGTNGKT 114 Query: 121 TTKEMLTIALSSIKKTY------ACIGSYNNHIGVPLTLARMPVDVDF-----GIFELGM 169 T + + A P M DF L Sbjct: 115 TISQCIAQAYPKPCAIIGTLGAGFPDSLIETGFTTPEATTLMRYLADFRARNAAACALEA 174 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S +G + R +A+ T HL +E A AK ++F I D+ Sbjct: 175 SSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFHWPRLRTAIINLDDE 234 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L++ + + Y+ G+++ L + + + + + V Sbjct: 235 FGLNLMRETTAMRVL--GYAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGRVAVDTT 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+ L + ++L A R G ++ + Y Sbjct: 293 LVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGEPLVVVD-YAHT 351 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +++ A++ L ++ GR V G G L+ V ++ Sbjct: 352 PDALENALTALRDVATTRAGRLSVVFG----CGGDRDKGKRPQMGALAERLADRVLVTND 407 Query: 410 HVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + D DV+++ K Sbjct: 408 NPRSEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKG 457 >gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium pacificum DSM 12653] gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium pacificum DSM 12653] Length = 535 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 139/357 (38%), Gaps = 14/357 (3%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPV 158 R R I ITGS GKT+TK +T LS SYN +GV + + Sbjct: 176 RKIRNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKD 235 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + E+G G+I+ L L P I VIT+I P HL F IE +A K E+ EGL Sbjct: 236 THQIFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLP 295 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + G LN D+ + K + S + K + + V Sbjct: 296 EDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIINTRQGLKFDAVTED 355 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G ++ +G H N+L + + L + + + LS P R + Sbjct: 356 GMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRL---QLISTPH 412 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+ID+++N+NP L+ + RRI V M E+GE + +L + ++ Sbjct: 413 GVTVIDDAFNSNPEGA---KEALACLKEMDAKRRIIVTPGMVELGEKEYEENKNLGKNIA 469 Query: 398 LYNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L G + + L + V +D +Q+ L GDVV+ Sbjct: 470 EV-CDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQNLLQPGDVVLF 525 >gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum SS9] gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Photobacterium profundum SS9] Length = 506 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 65/454 (14%), Positives = 133/454 (29%), Gaps = 44/454 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 +IDSR I + F A+ G DG FI A+ GA V+ D +A G + I + Sbjct: 36 TIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNIAKHGDIVEQDGIVII 95 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 + L+ +A + ++A+TG+ GKTT ++L + Y Sbjct: 96 YFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW--ANLIGYNAGVMGT 153 Query: 145 NHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAV 188 G+ +L I + +S G ++ ++ ++ Sbjct: 154 TGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLVQGRVKALQFVASI 213 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL + A AK +F + + DD F L HA+ + T Sbjct: 214 FTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVINADDDIGFTWLADLPHAVAVVTDK 273 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + L + + + L + ++L Sbjct: 274 ARLGEHYQGQALWLTDVMYSTQGVNISFDSSWGAGQFTAPLVGSFNVSNLLLALATLLAL 333 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + H G+ ++D ++ + L + H + Sbjct: 334 GHSIDKLIATAPHLTAVIGRMEVFQSPDKPMVVVDYAHTPDALE-----KALQALRVHCQ 388 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419 G+ + G G + + +S + ++ + + L Sbjct: 389 GKLWCIFG----CGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPAAIVSDMLQGLA 444 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 445 LPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKG 478 >gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] Length = 488 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 161/476 (33%), Gaps = 52/476 (10%) Query: 6 TFHDLL-QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +LL + + G V+ IS DSR++ P F A G + G DFI AV G Sbjct: 7 TLAELLPEWAEPTHSG----IAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V++++ ++ ++ +PV G+ D++ + +A + T++ ITG+ GKT+ Sbjct: 63 AVAVLIDSSELSDCPNVDVPVIGISDLVSEIGPVAARFYEQPSRAMTVVGITGTNGKTSC 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------- 166 + A+++I A +G+ N G P L + I Sbjct: 123 AHFVAQAMNNIGVKTAIVGTVGN--GFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVV 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + V + T ++ HL +E AKA +F+ + Sbjct: 181 MEVSSHALEQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKEFNLKAALING 240 Query: 227 YDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D +LL+ + A + FG+ A ++L +E L+ + Sbjct: 241 DDSFGRKLLRDESIEARKVSVGRLFGQYHFAAYRLALHGIEAE-------LKTPAGNFAF 293 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + L + A S+ G+ +ID + Sbjct: 294 ASKIIGEFNLDNLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAVVAADKPLVIIDYA 353 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + LS + H G V G G + +L ++ H+ Sbjct: 354 HTPDALE-----KALSAVRAHTTGTLWCVFG----CGGDRDAGKRELMGRIADQLADHLV 404 Query: 406 LSGFHVL-----ALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + I H DVV++ K Sbjct: 405 VTSDNPRTESPERIIEMIEQGICQHEPAIEADRAAAIRLAIMQASPEDVVLIAGKG 460 >gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B7A] gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B7A] Length = 495 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Blautia hansenii DSM 20583] gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Blautia hansenii DSM 20583] Length = 497 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 83/475 (17%), Positives = 162/475 (34%), Gaps = 43/475 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL+ ++ + + I+ DSR FF IKG DGH + +K Sbjct: 8 MKKLADLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEK 67 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +++V + + V V++ A+ ++ A K I ITG+ GKTT Sbjct: 68 GAAVLIVQDKVEVPEE---VTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKGKTT 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167 T ++ L + IG+ IG + V+ + Sbjct: 125 TTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDSVVM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + I + T I P H+ + ++ A ++ N Sbjct: 185 EVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP-NEHKDFADYLHCKALLFKQCKVGIFNA 243 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + +FG S+ AD + K + + + + K + Sbjct: 244 DADHLDEILE----GHTCQVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNFPVE 299 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I A ++ +L +++ T + +G+ ++ F +ID ++N Sbjct: 300 IDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKVKGRIEMVKVSDEFTLMIDYAHN 359 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A + S+L+ + + R + + G G S+ ++ EV + S Sbjct: 360 A-----MSLESLLTTLKEYKPNRLVCLFG---CGGNRSKLRRYEMGEVSGKLADLTIITS 411 Query: 408 G-------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + Y E + GD+VV+ K Sbjct: 412 DNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKG 466 >gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella piezotolerans WP3] gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans WP3] Length = 488 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 156/472 (33%), Gaps = 43/472 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L++ + N +++DSR++ + F A+ G DG +I A+ GA V+ Sbjct: 2 LIRDLLAPWFHYSGIEVFNDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVL 61 Query: 70 VNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT-TTK 123 V+TD G++ + + ++ LA A S II +TG+ GKT T+ Sbjct: 62 VHTDSPEEHGNISTDDGLLISFFQLNRQVSVLAAQAYPLSSKRPKIIGVTGTNGKTSVTQ 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMS 170 + + K+T N G + D I + +S Sbjct: 122 LIAQLQQLQSKQTAVMGTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ V +AV T ++ HL +E +AK +F + D Sbjct: 182 SHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMEAYGAAKQRLFTFSSLRAGLINCDDAI 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L + + +S + AD ++ + ++ +G Sbjct: 242 GASWLAQATSTKTL--GFSIKGNTKADIYAKQCLYHDGGVTCTLVWPEGEAKLQSPLLGD 299 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N++ LG + ++ D+ ++ S P GR +R+ + N + +A Sbjct: 300 FNLSNLVAALGALYLVGEDMAAIVRLASALTPVAGRMERFTTSGNVTLVVDYAHTPDA-- 357 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L + H + + G G S + + HV ++ + Sbjct: 358 -----IEQALQALRVHCKSELWCLFG----CGGDRDSGKRPMMASSAEQFADHVMVTSDN 408 Query: 411 VLA------LKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + D ++ + + GD+V++ K Sbjct: 409 ARSENPEDIIADVFSGFTEPQKAQSQVNRKTAIREVVALAKPGDMVLLAGKG 460 >gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 511 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 149/480 (31%), Gaps = 40/480 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + + +N IS +S+ + F + G + DG + + A++ GA Sbjct: 6 LHRLLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + IGS+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGSAAKQKIGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 +L L + K G ++ ++ + L Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILE 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225 +S + A+ T + HL S +E K +K G L Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVL 245 Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N+DD + L K +L I + F + + S + ++ Sbjct: 246 NHDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKEKIK 305 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + I+ L + K + F GR ++ N +L Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNNDVSRSLP 365 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + VL I +G+ I V G G L ++ Sbjct: 366 IVIIDYAHTP-DGLKKVLQSIKKLCKGKLITVFG----CGGDRDRSKRPLMGSIAEEFSD 420 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 HV+++ + + + + + + D+V++ K Sbjct: 421 HVFITSDNPRSEEPQQIVNDILMGIEKREKITFDIDRFKAINESIKFANKEDIVLIAGKG 480 >gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 495 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 64/478 (13%), Positives = 139/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A++G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ A G + +PV + + L+ LA + + + + Sbjct: 61 AAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + ++ E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K+ + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVFSAPGKPAVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467 >gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne] gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis str. Sterne] gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] Length = 401 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 130/397 (32%), Gaps = 41/397 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I F + G DG H F+ Sbjct: 1 MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161 GKTTT +L LS +G+ +G + D Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219 + + E+ L R + IAV T + HL +E K+ G Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNL 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + + + + + ++G AD Q + + V Sbjct: 232 STIDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 291 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +EV + +G N L + + + + +LS EGR + + Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVI 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 + +A +VLS I +G+ I V G Sbjct: 352 VDYAHTPDA-------LENVLSTIREFAKGKIITVFG 381 >gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae Sd197] gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1617] gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197] gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1617] Length = 495 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALTTLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 495 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEAADGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] Length = 513 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 75/479 (15%), Positives = 151/479 (31%), Gaps = 58/479 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ G + + G+ ++++ P + F KG G F+ A+ +GA Sbjct: 27 LAELLKDWPCSVTGGSIRTEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVKEALARGAA 86 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTT 122 +V + I IP V + L KLA ++IAITG+ GKTT Sbjct: 87 AIVSEESISLPIIDKEIPFVWVPNTALFLSYASAKLAA--FPAEALSVIAITGTNGKTTV 144 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFG 163 ++ L+++ K A IG+ ++ P+ + V Sbjct: 145 SHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEELTTLQAKELHPILKQCVRKGVSHV 204 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E S +G + V ++ HL + G+E AK + + +K Sbjct: 205 VLE--ASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKKLVLN 262 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + K SFG + D ++ + ++ + +Q + Sbjct: 263 GDDNFCRSVGIYDKK-------KSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHII 315 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G + QN + L V L +D ++ + EGR ++ + + Sbjct: 316 EIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKIDNPVGIDVYVD-- 373 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y +++A + V G ++ Sbjct: 374 --YAHTAEALQAVLQTFD-----RSKTIYLVFS----CGGNRDKAKRFAMGAVASKYADV 422 Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++L+ + + + + GD+V+V K Sbjct: 423 IYLTTDNPRDEDPIIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKG 481 >gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia albertii TW07627] gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia albertii TW07627] Length = 495 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPGAPSRALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] Length = 511 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 78/480 (16%), Positives = 148/480 (30%), Gaps = 40/480 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + + +N IS +S+ + F + G + DG + + A++ GA Sbjct: 6 LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + IGS+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGSAAKEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 +L L + K G + ++ ++ + L Sbjct: 126 TFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225 +S + A+ T + HL S +E K EK G L Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGICVL 245 Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N+DD + L K L I + F + K S + ++ Sbjct: 246 NHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPREKIQ 305 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + I+ L + K + F GR ++ + N +L Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSRSLP 365 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + VL I EG+ I V G G L ++ Sbjct: 366 TVIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEEFSD 420 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++++ + + + + + D+V++ K Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIAGKG 480 >gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] Length = 477 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 64/448 (14%), Positives = 152/448 (33%), Gaps = 35/448 (7%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 ++++S+ + F AI G +DG D+I A++ A V+ + + + ++P FG Sbjct: 13 KDLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESANYSKNKAWNVPSFG 72 Query: 88 VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT--------Y 137 ++++ + ++A +I +TG+ GKT+ L SS+ ++ Sbjct: 73 IENLNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIGTLGS 132 Query: 138 ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192 P + + +S + + I V+T + Sbjct: 133 GEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKVLTNV 192 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL + K + F E I D ELL + + ++ Sbjct: 193 TRDHLDYHKTLANYQKIKKQFFSDGECKNFILNIDDCIGQELLMEVDWSEK--NLTTYAI 250 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 AD + + ++ + K+ + + G H N+L +G + +D Sbjct: 251 DVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFSIDQ 310 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 IKA+ + GR + + + ++D ++ + +VL + + I Sbjct: 311 IIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDA-----LKNVLQSLRAISDNEII 365 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIHVHYS 427 + G G +++ V ++ + + + ++I + Sbjct: 366 LLFG----CGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHV 421 Query: 428 --ETMDGLFLFIQSSLVDGDVVVV--KS 451 E+ + + + ++++ K Sbjct: 422 VIESREQAIKKAIGMMEENSILLIAGKG 449 >gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii DSM 519] gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii] Length = 516 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 78/460 (16%), Positives = 153/460 (33%), Gaps = 37/460 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GI+ S + + FF IKG DGH ++L A KGA VV + ++ I Sbjct: 23 DHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNKGAVGAVVESI----QDNIDI 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P + V D +L A +I IT + GKTTT M+ L + +G Sbjct: 79 PQYLVSDARHSLALCACNFYNHPSKFMKMIGITATNGKTTTAFMIDNILENNNFKTGLVG 138 Query: 142 SYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + +G + + RM + + + +S + I Sbjct: 139 TVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLTHVT-MEVSSSAIELDRIAGIDYDI 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA----L 242 + I+ H+ E + K+ + +K LN D L K+ A Sbjct: 198 VIFNNISREHIDLHETFENYVALKSSLITNAKKGSWAILNMDCEEAASLVNKTEANVLTY 257 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G+ + KN D + K E S +S E+ GYH N + Sbjct: 258 GVNNDNAMILCKNLDLSSGRGKFTVEISKLFSINGYLYMNQSFEISLSVPGYHSVYNAMA 317 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN--PASMKAA 356 + I +D ++ F E R + + + N + ++ Sbjct: 318 AIAAALICKVPIDVIQESFLNFKGVERRFEFIYENDFKIIDDHFANAGNIDVTMETLNFM 377 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVL 412 + G R ++ + ++ + ++L+E+++ + + ++ Sbjct: 378 KYNKLHLVYAIRGSRGPIVNNENAQAIVTWAKKLNLSEIIATKSADYTTEKDIVTDEEEA 437 Query: 413 ALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + S + E + + + DV+++ Sbjct: 438 VFSEIINSSKLKLELYEHLSDAIGEALNRAKEDDVILLAG 477 >gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] Length = 486 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 85/450 (18%), Positives = 145/450 (32%), Gaps = 44/450 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + DSR + + F AI GP DG DF+ A++KGA +V ++ L Sbjct: 24 VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAEL----ISHP 79 Query: 90 DVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 AL +LA+ SK ++ ITG+ GKTTT ++ LSS +G+ + Sbjct: 80 SPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTVSYRW 139 Query: 148 GVPLTLARMPVDVDFGIFELGM--------------SHLGEIRFLTHLVRPHIAVITTIA 193 A + + + E+ S + ++ AVIT + Sbjct: 140 PGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDAAVITNVT 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 HL +EE AK +F+ +N+DD F L + + Sbjct: 200 QDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLECYSPAIGYGMDASCA 259 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 + + +++ G+ E+ IG N+L I + Sbjct: 260 TGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLHMGLTPKQ 319 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 F GR +R R F Y P ++ + L + + I Sbjct: 320 M-NVFKEFDGVPGRLERVRNDQGLNIFVD----YAHTPDALDNVLRTLKDLDFNK---VI 371 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDA---LPRSIH 423 V G G L + L+ + + + DA L H Sbjct: 372 TVFG----CGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKGCDH 427 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + + + DV+++ K Sbjct: 428 VIEEVDRADAIRKAVAEMTEDDVLLIAGKG 457 >gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase [Staphylococcus pseudintermedius ED99] Length = 494 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 141/474 (29%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L I + VN I+ DSR F A KG D H F V++G Sbjct: 1 MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 +VVVN A + V D L + L + T I +TG+ GKT+ Sbjct: 61 CQIVVVNR---ALELQGDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSI 117 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---- 169 M+ + P T+ + Sbjct: 118 ATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLE 177 Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVI 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++G + A F + + + + V I Sbjct: 238 INADDPFSTYLKSVTPYESLTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYI 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V + A ++T K ++ P L +L + Sbjct: 298 GRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ V S +V + Sbjct: 351 YAHTADGMAKLIDAVEPFVKQKLIFLVG-MA--GERDLTKTPEMGRVASRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H Y E GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVL-ASKG 458 >gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 494 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 141/474 (29%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L I + VN I+ DSR F A KG D H F V++G Sbjct: 1 MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 +VVVN A + V D L + L + T I +TG+ GKT+ Sbjct: 61 CQIVVVNR---ALELQGDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSI 117 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---- 169 M+ + P T+ + Sbjct: 118 ATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLE 177 Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVI 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++G + A F + + + + V I Sbjct: 238 INADDPFSTYLKSVTPYESLTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYI 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V + A ++T K ++ P L +L + Sbjct: 298 GRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ V S +V + Sbjct: 351 YAHTADGMAKLIDAVEPFVKQKLIFLVG-MA--GERDLTKTPEMGRVASRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H Y E GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVL-ASKG 458 >gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium QM B1551] gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium QM B1551] Length = 469 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 99/459 (21%), Positives = 188/459 (40%), Gaps = 30/459 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDS--RSIAPQEAFF-----AIKGPHYDGHDFI 57 +T +++L+ G + +I+ + I F I+G + Sbjct: 4 FTLNEILKQTGGDLCYGSGNPVIKH-AINYAKKDIEDHTLIFHLDREPIRG------KYW 56 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117 + +V+ + + + +I + + A K R +I +TG+ Sbjct: 57 KE---NHSIVVITDHPELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTC 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177 GKTTTKEM+ L K A S N+ L + + +FE+ +++ G ++ Sbjct: 114 GKTTTKEMIRQILIEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEMPVAYPGYLKV 173 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 +P I ++ I HL++ EE AKAEI EGL+ I + D E +K Sbjct: 174 ACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADD--ENIKR 231 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ + GK ++ FQ + K ++ Q K + G G H N L Sbjct: 232 VLDVSHLQGVVYIGKGDDSQFQAKDIKYAKGGMAFTLKYQNKEYDAFIPGYGEHNVYNAL 291 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + V + D+ AI+ LS+F E T+I++++N++P SM A+ Sbjct: 292 AAIAAVFYVGVDISVAIQRLSLFEQVEE---HLEFKRGLNECTVINDTWNSSPLSMATAL 348 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 VLS +S + IA+LG M ++GE + + D+ + + I + + G A+ Sbjct: 349 GVLSDMSKEKQS--IALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGDEAKAIG 406 Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + V++ +T D ++ + L + ++++K Sbjct: 407 TGALKCGMDPNKVYFCKTGDEVYNVLAPYLNENTIILLK 445 >gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] Length = 494 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 153/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H+F + +++G Sbjct: 1 MNASALFEKIRVKNVIGTLDKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 +VVVN ++ + V D L + LA + T +TG+ GKT+ Sbjct: 61 CSIVVVNRELELEGE---VTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G A F + + + ++ V + Sbjct: 238 LNNDDEFSHYLASVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYRVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V A ++ I A++ P L +L + Sbjct: 298 GRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ V +V + Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIRHAIEVAEPGDTVVL-ASKG 458 >gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132] gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans ND132] Length = 507 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 79/460 (17%), Positives = 139/460 (30%), Gaps = 52/460 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSIPVF 86 + DSR I E F A+ G G D+I +A+ GA +V D+VA + Sbjct: 33 VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 VD+ AL +LA A ++AITG+ GKTTT ++ L+S +G+ N Sbjct: 93 YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTVN 152 Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190 + A + + I E + +S ++ + AV T Sbjct: 153 YRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVFT 212 Query: 191 TIAPAHLSNFSGIEEIASAKAE-IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK---- 245 + HL +E AKA+ E LNYDD + L A+ Sbjct: 213 NLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIGYGIGD 272 Query: 246 ---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 G ++ + + + + G + +G+ Sbjct: 273 ASLVRQEVGDKPLVQGRILSMTGQGMEIETSWKGKTWVVRSPLVGSFNALNLLAAQAVGL 332 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + R + + ++ + +V Sbjct: 333 QLGLNCKDMRRLSTFPGVPGRLERVMNDKNLDIFVDYAHTPDALD----------NVQRT 382 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD- 416 ++ R I V G G L + L+ A+ D Sbjct: 383 LAALDFKRLITVFG----CGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDD 438 Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + V + + + GD +++ K Sbjct: 439 ARPGLAGAKRVMENPDRTEAIKMAVAEMEPGDALLIAGKG 478 >gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 101-1] gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B str. REL606] gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 101-1] gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli BL21(DE3)] gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia coli B str. REL606] gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Escherichia coli BL21(DE3)] gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489] gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007] Length = 495 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] Length = 498 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 167/474 (35%), Gaps = 32/474 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D++ I+ +I VN IS DSR I + F AIKG DGH+FI +++G Sbjct: 1 MNILDIIDNIKIKTIYGKLPDSVNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LV+ + ++ + ++ V ++ + +A + +A+TG+ GKT+ Sbjct: 61 AALVIASRYENYNVENCAVLVVREHEIEKIASMIAKKINEGADIHTVAVTGTNGKTSIST 120 Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169 ++ L ++ ++ A I + + P+ DV I EL Sbjct: 121 LVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFEA 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD- 228 S + V +A+ T + HL ++ A K+ +F L + Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGVL 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + K S L + I K + ADF KQ E + KS E Sbjct: 241 NKDDSYYKIISKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGTFECT 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ M+ + +++ L PK G L I + Sbjct: 301 TNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILGDDLPIDIISDFAH 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P + + +I +G+R ++ M G S + E++S +V ++ Sbjct: 361 TPDGYEKLLEATREIR---KGKRTLLVTGMG--GGRDISKGPLIGEIISEA--DYVVITT 413 Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454 V L ++ + + E I GDVV++ +S Sbjct: 414 DSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSKPGDVVIL-ASKG 466 >gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fluviicola taffensis DSM 16823] gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fluviicola taffensis DSM 16823] Length = 486 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 87/476 (18%), Positives = 161/476 (33%), Gaps = 47/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T ++L +A + V+ + DSR F A+KG D HDFI ++K Sbjct: 1 MKTVNELAKATEITQWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 G ++V + + V V + AL +LA A ++ +TG+ GKTT Sbjct: 61 GCRVIVAERVIEVPEH---VTVLVVPNSALALGELAHAFYDYPSRSLELVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FEL 167 T +L + + + + N IG + + + + Sbjct: 118 TTTLLHDLYTELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSHCFM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + + T I HL +E +AK F+ L+K +N Sbjct: 178 EVSSHAISQHRIAGLVFKGGAFTNITHDHLDYHGTFKEYIAAKKTFFDELKKDAFALVNA 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A +FG +ADF+ + E S+ + L +E+ Sbjct: 238 DDKNGMVMVQNTKAKVS----TFGLKTHADFK----AKVLENSFSGLLLTINGIELWTRL 289 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N+ GI +L +D + LS +GR + + + Y Sbjct: 290 IGDFNAYNIATVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSETDITAVVD----YA 345 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + + I E V G+ ++A + + + S Sbjct: 346 HTPDALENVLKTIENIRTRNEQVITVV----GCGGDRDALKRPEMARIACELSNKVILTS 401 Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + H S D S D++++ K Sbjct: 402 DNPRTEDPAEILKQMEAGVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKG 457 >gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae NTUH-K2044] gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 495 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 64/478 (13%), Positives = 138/478 (28%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A++G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ A G + +PV + + L+ LA + + + + Sbjct: 61 AAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + ++ E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467 >gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 471 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 80/464 (17%), Positives = 145/464 (31%), Gaps = 48/464 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + + ++G+ DSR I F AI G DGH I +++ GA ++ T + Sbjct: 2 RLVFEGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQT--LP 59 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 + V D AL ++ K +I +TG+ GKTT +L + Sbjct: 60 VTLRPDVTYICVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLG 119 Query: 135 KT---YACIGSYNNHIGVPLTLAR-----------MPVDVDFGIFELGMSHLGEIRFLTH 180 + I + N VP T V + +S + Sbjct: 120 YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++ + T + HL + K F+ L N DD + + Sbjct: 180 GLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFFDLLPTGAFALANKDDKNGAFMLQNTK 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A + ADF+ R + + M + + E+ +G A N+L Sbjct: 240 AHKK----FYSLQSLADFKSRILESHFNGTLMTINDK----ELSTLLVGKFNAYNLLAIY 291 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +L + D + LSV P GR + + Y P ++ ++ + Sbjct: 292 GTAILLGQNSDEILVLLSVLRPVIGRFETLNASRGFTVIVD----YAHTPDALINVLNTI 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHV 411 ++I +G+ I V+G G + ++ V L+ G + Sbjct: 348 NEI-LARKGKIITVIG----CGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGDII 402 Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L D+V++ K Sbjct: 403 EDMLAGLDDIQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKG 446 >gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] Length = 499 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 75/456 (16%), Positives = 149/456 (32%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA +V+ D G Sbjct: 29 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYR 88 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV + ++ L++LA +I +TG+ GKTT +++ L + A + Sbjct: 89 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148 Query: 141 GSY-----------NNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHI 186 G+ N G L + D L S G ++ + Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAEHGAQYTALETSSHGLVQGRVKKLHFVA 208 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGV-- 266 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S N + + +S + + + E H + L + ++L Sbjct: 267 --SLVAKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLL 324 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + + + + G+ Q ++D ++ + L + H Sbjct: 325 SLGFEKSALLATAPKLRPVLGRMELFQREQKAKIVVDYAHTPDALE-----KALRALRVH 379 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 436 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471 >gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia fergusonii ATCC 35469] gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia fergusonii ATCC 35469] Length = 495 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] Length = 508 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 DL++ ++G ++GI+ S+ + P FFA+ G H+DGHDFI A+Q G+ + Sbjct: 14 QDLIKYVKGSL-----DLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNV 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + D+ + ++ +DD + ++ + K +I +TG+ GK++ Sbjct: 69 IVCSRDL--DFYNPNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGI 164 + + L I + G + V + I Sbjct: 127 YYIYLLLRKKGVKVGFISTVFFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L V AV T I HL I+ + K +F + Sbjct: 187 LESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFG 246 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + D F+ + K+ ADF + + ++ + E +G Sbjct: 247 VINLDDFYSYDFKNAIKKS---FTYSLKNSQADFFVSFINEKTDSTEFEFYHKGVKYFAN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + +G +N++ L +VS + I ++ K G+ L Q F +ID Sbjct: 304 VNLLGSFNVENVMAALILVSKILNSDIQDIV-DNLSCIKSLDGRMDSINLGQNFSVIIDY 362 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ S + R I+V G E L +S + Sbjct: 363 AHTPGAFS-----KLFPIFKKFTTNRLISVFGSAGE----RDFAKRFLQGQISDSYSDLI 413 Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447 L + + + + + + S GD++ Sbjct: 414 VLCDEDPRGENSMCIIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLI 468 >gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UMN026] gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412] gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302] gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli UMN026] gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412] gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L S A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLSDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] Length = 494 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 74/480 (15%), Positives = 139/480 (28%), Gaps = 43/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ T LL S V + +DSR + F AIKG DG FI A Sbjct: 1 MSKELTLATLLAPWLDISTDESANVVVERLELDSRKVTQGTTFVAIKGHAVDGRRFINSA 60 Query: 61 VQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 ++ GA ++ S + + +D + L+ LA S +I +TG+ Sbjct: 61 IELGANAIIAEACELHPHGKVERSSGVSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGT 120 Query: 117 VGKTTTKEMLTIALSSIKKTY--------------ACIGSYNNHIGVPLTLARMPVDVDF 162 GKTT +++ L I + + Sbjct: 121 NGKTTITQIMAQWLDLIGHKAAVMGTTGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGA 180 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L +S G ++ + + V + ++ HL +EE A AK +F+ Sbjct: 181 QYTALEVSSHGLVQGRVKTLPFEVGVFSNLSRDHLDYHGTMEEYAEAKFSLFDQHTCKTA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D +K A+ + + + + E Sbjct: 241 VINIDDQVGASWVKRLDSAIAVSLNPT---DHPRAVWAESVSYSEAGISLVIDGLFGRGE 297 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG A N+L+ L + L D + S P GR + + + Sbjct: 298 FTIALIGEFNASNVLLALTALLALGVDKQQLLDTASSLKPVLGRMELFTASDKAKVVVDY 357 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H G+ + G G + + + Sbjct: 358 AHTPDA-------LEKALKALRVHCHGKLWGIFG----CGGDRDTGKRPMMAAIGEELAD 406 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + + + + + D++++ K Sbjct: 407 KVILTDDNPRSESPAAIVEDMLKGMNEPELAIVEHNRFDALKYALAHSGEQDIILLAGKG 466 >gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA280] gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA280] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] Length = 529 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 147/480 (30%), Gaps = 65/480 (13%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G++P + I S + P F AI+G DGHDFI A+ +GA VV ++ A Sbjct: 23 GVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFIDQALARGAVAVVAEKEVDA--- 79 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSI---- 133 V D AL L+ A ++ +TG+ GKTTT ++ L Sbjct: 80 -RDAVTVRVADARNALALLSAVFYGAPSARLVLVGVTGTNGKTTTAALVEHILVKAGKQV 138 Query: 134 -----KKTYACIGSYNNHIGVPLT-------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + N + P + V + E+ SH + + Sbjct: 139 GVIGTGNFRYVGRRFKNPLTTPESADLQHILRDMATAGVTHVVMEV-SSHALAQQRVAGC 197 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAK 238 +A+ T + HL +E K +F G ++ + + Sbjct: 198 A-FDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGTRSVGVREKHMVSVINCNDARGRGL 256 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 L + G ++ D + + + + G + +N+L Sbjct: 257 FDTLPVPGRMGAGFAEACDIYPKGVTSSPDGLAGTIVTPAGPIPFCSPLAGTYNLENILC 316 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G +L + + + F GR ++ + + F + +A + Sbjct: 317 AAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVADRMGRFVFVDYAHTPDA-------LQN 369 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413 VLS + GR V G G ++ V ++ + + Sbjct: 370 VLSALRKISAGRLFCVFG----CGGDRDRAKRPKMGGIAATIADRVVVTSDNPRSEDPEA 425 Query: 414 -LKDALPR-SIHVHYSETMDGLF------LFIQS------------SLVDGDVVVV--KS 451 + D + + + GL ++ + GD +++ K Sbjct: 426 IIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIRAAVSAAAPGDTILIAGKG 485 >gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185] gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGVTFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 78/480 (16%), Positives = 153/480 (31%), Gaps = 42/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +L+ + + ++ + +DSR I E F AI+G DG FI A Sbjct: 1 MNTPKALSELIAPWLELADTDLASLAISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKA 60 Query: 61 VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + +GA +V+ D G + +PV + ++ L++LA + +I TG+ Sbjct: 61 IAQGANIVLAEADAHHVHGQVEFREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGATGT 120 Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD--------F 162 GKTT +++ L ++ T T + + Sbjct: 121 NGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L S G ++ + V + ++ HL ++ A AK +F Sbjct: 181 QYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I D + +K HA+GI + ++ + + ++ E Sbjct: 241 IINVDDAVGAQWVKQLPHAIGISLLAQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG A N+L+ L + L + + P GR + ++ Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKMVVDY 358 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L + H G+ A+ G G + ++ Sbjct: 359 AHTPDA-------LEKALRALRVHCAGQLWAIFG----CGGDRDRGKRPMMAAIAEQYAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + L H + + D++++ K Sbjct: 408 RVILTDDNPRSESPQAIVADMLAGLTHPELAHIEHNRFQAASYALQNAGAQDIILLAGKG 467 >gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas europaea ATCC 19718] gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas europaea ATCC 19718] Length = 521 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 68/467 (14%), Positives = 137/467 (29%), Gaps = 43/467 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V + DSR + P + F A G +D + I A+ +G ++ + I Sbjct: 23 DVKVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEKQGFSWKPEWKI 82 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P GV + K+A A ++ ITG+ GKTT + A++++ K A IG Sbjct: 83 PNLGVAGLRHEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKTAVIG 142 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPH 185 + + G P L ++ + S G + Sbjct: 143 TLGH--GFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLIGSEFA 200 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 +AV+T + HL ++ A+AKA++F + + EL + + Sbjct: 201 VAVLTNLTRDHLDYHDSMDAYAAAKAKLFFWEGLQYAVLNLDEVLGVELSQQLAGKDLSI 260 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTL 300 Y F + + K + Q N L Sbjct: 261 IGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQIGFDVEFCNRYASLQCNVTGRYNAYNLL 320 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID------ESYNANPASMK 354 +++ L A A++ + R +I ++ N ++ Sbjct: 321 AVLAALLASNIDLDDAITALRQVQPIPGRMEKLGGGNQPVVIVDYAHTPDALNEVLTGLR 380 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413 ++ + + + + G L ++ V ++ + Sbjct: 381 ETLAGTRIKKRIRKNQAKLIC--VIGCGGDRDRGKRPLIGEIASRLADEVIITSDNPRNE 438 Query: 414 -----LKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + H GD+V++ K Sbjct: 439 NPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVLIAGKG 485 >gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E24377A] gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SE11] gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IAI1] gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 55989] gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088] gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA271] gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H591] gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E24377A] gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli SE11] gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli 55989] gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli IAI1] gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088] gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120] gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167] gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA271] gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H591] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 492 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 159/473 (33%), Gaps = 43/473 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL++ IQ + + V ++ DSR + P F AIKG DGH++ AV++G Sbjct: 7 LNLTDLVKTIQLINQPNLEGIVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVERG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----------------- 107 A VV + LS+P V D ++ LA A Sbjct: 67 AVAVVSERSL-----DLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTTT 121 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 TI+ V +T + T+ + K + + LA+M + + + Sbjct: 122 TTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDEGVTDVM-M 180 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G I T + HL E A AK +F L + + Sbjct: 181 EVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRGKVA 240 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + + ++G AD +Q Q+ + QG + V Sbjct: 241 VLNADDAQTPLYETMTGAKVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAKLPVTVQF 300 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG N+L+ G + ++ KAL + HP +GR + G+ D ++ Sbjct: 301 IGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGR---MQRLDVPGYNVYADYAHT 357 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + + + ++ + G + + E+ S Y + + + Sbjct: 358 PDGIE--------QCLKSLVGVPKEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTVIITT 409 Query: 408 GFHVLALKDALPRSI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 +++ + I H ++ E + + +++V+ K Sbjct: 410 DDPRFEAYESITKGIAAGMTHDNFVEIGDREEAVRYAARLAKPDNIIVLAGKG 462 >gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E22] gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E110019] gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B171] gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sp. D9] gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O103:H2 str. 12009] gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O111:H- str. 11128] gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W] gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Shigella sp. D9] gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E22] gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E110019] gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B171] gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O103:H2 str. 12009] gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O111:H- str. 11128] gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W] gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli W] gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli EC4100B] gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1180] gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11] gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Shigella sp. D9] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] Length = 480 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 85/459 (18%), Positives = 148/459 (32%), Gaps = 36/459 (7%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + G++ DSR + P F A KG DG F+ AV+ A V+ T+ + Sbjct: 3 LPDTADGLSIEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATNAAEA 62 Query: 78 IGSLSIPVFGV---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134 + +L P V D+ +K+A R TI+A+TG+ GKT+ + + Sbjct: 63 VRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAAG 122 Query: 135 KT-------YACIGSYNNHIGVPLTLA-RMPVDVDFGIFE------LGMSHLGEIRFLTH 180 ++ G+ ++ D+ E L S G ++ Sbjct: 123 HPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRLD 182 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 VR A T + H+ IE+ AK +F L G + + Sbjct: 183 GVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAIA 242 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +++ G+ D +L + + V+ +V IG N L+ Sbjct: 243 EERGLPVFTVGE-TGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAA 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ D A++AL GR A ++ Y P ++ L Sbjct: 302 GLAITAGIDAGAALRALENLKGAPGR---LELAGTTPAGGMVFVDYAHKPDALD---KAL 355 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415 + + P EG V+G G L + + V ++ ++ Sbjct: 356 AALKPFAEGSLSVVVGA----GGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATIR 411 Query: 416 DA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A L + L GD++ V K Sbjct: 412 KAVLAGAPGGLEIGDRAEAIAEGIRRLKSGDILCVAGKG 450 >gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Koribacter versatilis Ellin345] gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Koribacter versatilis Ellin345] Length = 509 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 65/467 (13%), Positives = 130/467 (27%), Gaps = 41/467 (8%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 + ++G+ DSR + P F A++G DG+ +I A++ GA +V ++ Sbjct: 9 GAEILSCSGNAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAVAIVTDSAT 68 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS-----------------V 117 I + AL++L+ + + Sbjct: 69 --EIPRPGVAWAICAHGRRALSRLSANFYKHPAEKLAITGVTGTNGKTTTTYILDSLLRH 126 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIR 176 T + T+ + + + + + + E+ SH Sbjct: 127 AGRKTAMIGTVEYHIADRVIPAPHTTPEPLELNQIFREALNEGATEAVMEV-SSHALAQE 185 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + +AV T + HL +E +KA +F+G + + Sbjct: 186 RVFGIP-YDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPPRVGIINRD--DEWA 242 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K + K A + L V + Sbjct: 243 EKFMKVANKHCDKVYTYGFAAGDFHAENAEMTSTGTRFDLVTPEGRVPIFSPLIGKVNVL 302 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + + + A S+ H G+ R + Q F ++D ++ + Sbjct: 303 NLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERVSAGQPFTVIVDYAHTDDALR-NVT 361 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413 + G GR I + G G L + V L+ + + Sbjct: 362 KLARDFVQQAGGGRVITLFG----CGGDRDKTKRPLMGKAAGEGSDLVVLTSDNPRSEDP 417 Query: 414 ---LKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D LP I ++ GDVV++ K Sbjct: 418 QAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVVILAGKG 464 >gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 495 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TW10509] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 467 >gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M718] gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Escherichia coli 042] gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M718] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA143] gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA143] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli ATCC 8739] gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 53638] gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC 8739] gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 53638] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii Sb227] gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227] gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella flexneri CDC 796-83] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + ++ + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H IG N+L+ L + L + +K + P GR + + Sbjct: 301 SHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTVPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii L2-63] Length = 488 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 83/475 (17%), Positives = 158/475 (33%), Gaps = 43/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL ++ G + ++ I DSR + AF +KG DGH + AV+KG Sbjct: 1 MKLKDLLINVEYTVQGNL-NTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYAKSAVEKG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V++ D + + V V+D AL+ +++ + +AITG+ GKTTT Sbjct: 60 ASALVIS-DSLDFEVPSDVAVVKVEDTRYALSLMSIEFFGHPEDELYTVAITGTKGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELG 168 M+ IG+ G R ++ + Sbjct: 119 TAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDNTTPESYIIQKSMRDMINAGCKAMVIE 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S +G + + + T + H+ + +A + N D Sbjct: 179 ASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKD-LAEYLYCKSLLFRQCKFAAANID 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + + ++G + NAD + + SE ++ V + + ++ + + Sbjct: 238 DPAWKDITKDFKGSVL----TYGFADNADLKGKNAHLLSENGFVGVHFETEGIKNLSVDV 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L +S ++ + + + R +TLI + Y Sbjct: 294 DIPGKFNAYNALAAISAVSFFDEIEDQMIIDALKVAKVKGRVERVPVPYNYTLIID-YAH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWL- 406 N SM+ + L Q +PH L M G ++ E + V Sbjct: 353 NALSMENVLETLRQYNPHR-------LITMFGAGGNRPKVRRYEMGETSGRLSDLSVVTE 405 Query: 407 -------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +K L + + + DGD++V+ K Sbjct: 406 DNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDGDIIVLAGKG 460 >gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli O55:H7 str. CB9615] gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli O55:H7 str. CB9615] gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O55:H7 str. USDA 5905] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase MurE [Pantoea ananatis AJ13355] Length = 471 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 130/453 (28%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F AI G DG FI A+ +G V+ + AS G + +PV Sbjct: 2 TLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L+ LA + I + T +A + Sbjct: 62 YLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTVG 121 Query: 147 IGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ L + + +S G ++ + AV T Sbjct: 122 NGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +++ SAK +F + I D+ L A+ + + Sbjct: 182 NLSRDHLDYHGDMQQYESAKWLLFSEHQVGVAIINADDEVGRRWLANLPDAVAVTMENNL 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + E+ +G N+L+ L + L Sbjct: 242 QPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLLALGYA 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D ++A + P GR + + + +A L H +G Sbjct: 302 LDDLLRAAARLQPVNGRMEVFSATGKPTVVVDYAHTPDA-------LEKALEAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + + G G L ++ V ++ + + L Sbjct: 355 KLWCLFG----CGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 D+V+V K Sbjct: 411 PGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKG 443 >gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii DSM 13941] gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii DSM 13941] Length = 515 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 78/489 (15%), Positives = 137/489 (28%), Gaps = 57/489 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 HDLL+ + + + I DSR++ P F A +G H DGH +I A+++GA Sbjct: 5 LHDLLRTLCDPAHLPRANPAITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERGAA 64 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAI----------- 113 VV A G + +P + AL LA A + ++ I Sbjct: 65 AVVYEDP--AWDGRIPVPALRTPNARAALAPLAAAFYGYPGRQMRVVGITGTDGKTTTTF 122 Query: 114 ---TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVDFGIFE 166 ++ I S + P + + + E Sbjct: 123 LTSVALEAGGAVTGLMGTVDFKIAGRLWANDSRQSTPEAPEVQALLRDMVHAGCAYAVVE 182 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L IAV+T + HL +E+ KA +FE L + Sbjct: 183 ATSHALSARWNRLAGCAFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFHDDATP 242 Query: 227 YDDSFFELLKAKSHALGIK--------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + ++ A + ++ NAD R + + V Sbjct: 243 FKQRKIAIVNADDPNHRMFLDAAPPYAERLTYAIHANADVCARNVRSTRDGLMFRVTTPW 302 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + G N L L + + + AL GR +R Sbjct: 303 GAADAHLRLTGDFNVWNALAALTVACAEGVPLSVCLAALERVPGVRGRMERIEMGQPFTV 362 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + A ++ + P +G+ I V G E L ++ Sbjct: 363 LVDYAHTPGA-------FEKLMRIVRPLTDGQLIVVFGSAGE----RDRAKRPLQGEIAG 411 Query: 399 YNISHVWLSGFHVL-----ALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDG 444 V L+ A+ + + + G Sbjct: 412 RFCDLVVLTDEDPRLEDREAIIAEIAVGVEAAGKRIGETCLCIPDRAHAIRTAFARARPG 471 Query: 445 DVVVV--KS 451 D+V++ K Sbjct: 472 DIVLLLGKG 480 >gi|83596046|gb|ABC25404.1| UDP-MurNAc-pentapeptide synthetase [uncultured marine bacterium Ant39E11] Length = 364 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 165/380 (43%), Gaps = 27/380 (7%) Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V+ V + L +L +LA A R+ T+I +TGS GKTT KE+ LS +A G++N Sbjct: 12 VYKVVNALTSLQELAHAHRMNWGGTLIGLTGSNGKTTAKELFRSVLSQSFNVHATDGNFN 71 Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 NHIG+PLTL + + + E+G +H GEI LT + P I IT AHL F G++ Sbjct: 72 NHIGLPLTLVGLKKSHEVAVIEMGANHRGEIASLTAIAAPDIGYITNFGQAHLEGFGGVD 131 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + K E+++ L G L D ++ + + Sbjct: 132 GVIQGKIELYQWLTSHGKPSLVNDSDPLQI-----------------EHAGNNKLPSSKD 174 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + V + H +G + +++ ++ + + + K + + P Sbjct: 175 VVCQSKDQGVHVTIGDTRAQSHLVGDFHSGSLVASVNLGRYMGMADEAIAKGIEAYIPSN 234 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 RG+ L + ++YNANP+SM+A++ + + P + + GD+ EMG Sbjct: 235 NRGQW----LTTDSNRIFLDAYNANPSSMEASLLAVHALHPELP--HVYIAGDIFEMGSH 288 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 +S H + +++ N+ V L G LA A V + + + +S+ V G Sbjct: 289 EKSAHQSMVDLMQTLNLKTVHLVG---LAFGKAQAPRTMVKH-DNTKDALAYFKSNPVRG 344 Query: 445 DVVVVKSSNSCGFYRLINLL 464 +V +K+S L+ L Sbjct: 345 AMVWIKASRGMALEGLLEAL 364 >gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia kristensenii ATCC 33638] gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia kristensenii ATCC 33638] Length = 471 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 68/453 (15%), Positives = 132/453 (29%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86 ++DSR A + F A+ G DG +I A+ +G VV D VA S +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + D+ L+ LA + A + + + T +A + Sbjct: 62 YLRDLNQHLSNLAGQFYQQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLGETSAVMGTVG 121 Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ + + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F + I DD L A+ + + Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDDVGRRWLGQLPQAVAVSMEENV 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 N + + + + + + ++ +G N+L+ L + L Sbjct: 242 PAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSLGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + + P GR + + + +A L+ H +G Sbjct: 302 LAELLASAPNLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H DVV++ K Sbjct: 411 AGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 443 >gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia tasmaniensis Et1/99] gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia tasmaniensis Et1/99] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 135/478 (28%), Gaps = 49/478 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL + P+ + +++DSR A + F AIKG DG FI A+ +G Sbjct: 6 LRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAIKGHAADGRRFIPQAIAQGVA 61 Query: 67 LVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 V+ + A G + +PV + + L+ LA + + I + T Sbjct: 62 AVIAEAEGEAEDGQIVETHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKT 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 +A + G+ LA + Sbjct: 122 TTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAA 181 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G ++ + A T ++ HL + A + + G +N Sbjct: 182 MEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAIIN 240 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVV 284 DD K T+ + + L+ K + + ++ Sbjct: 241 ADDKVGRRWLEKLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + S P GR + + Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLAALTATASQLQPVTGRMEVFSAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L+ H +GR + G G L ++ V Sbjct: 361 TPDA-------LEKALTAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQCADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + GD+V+V K Sbjct: 410 VITDDNPRSEDPAAIVSDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467 >gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium sp. P08] Length = 529 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 89/481 (18%), Positives = 151/481 (31%), Gaps = 49/481 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 WT DL+ ++ G + GI++DSR + P + + ++G H G F A + G Sbjct: 27 WT--DLMASLDGCRADGNG-PAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESG 83 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V+ + +PV VDD A+ A T+ ITG+ GKTTT Sbjct: 84 AVAVLTDEHGAKLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTT 143 Query: 123 KEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDF---------GIFE------ 166 ++ L + G L AR V + E Sbjct: 144 AFLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDV 203 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + T + HL +++ AKA +F + + Sbjct: 204 VMEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFT-PDLARVGVI 262 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD L + A G+ + + +D+Q+ W + + +V + Sbjct: 263 NVDDPRGRQLIERMQANGV-RAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLEL 321 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G +N M L ++ D L R L T + + Sbjct: 322 SLPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQVPGR---MERVDLGADAPTALVD- 377 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + P ++ +A+ ++ GR IAVLG G + ++ V Sbjct: 378 FAHTPQAIASALDAARSLADS--GRLIAVLGA----GGDRDAVKRGPMGQVAAERADIVV 431 Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + DA I V GDV+ V K Sbjct: 432 ITDDNPRTEDPAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGK 491 Query: 451 S 451 Sbjct: 492 G 492 >gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rettgeri DSM 1131] gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rettgeri DSM 1131] Length = 471 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 71/453 (15%), Positives = 146/453 (32%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F AIKG DG +I A+ +G V+ + A G + +PV Sbjct: 2 TLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 ++D+ L+ LA + K ++ +TG+ GKTTT +++ + + + Sbjct: 62 YLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G E + +S G ++ ++ AV T Sbjct: 122 NGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK +F I D + L+ A + Sbjct: 182 NLSRDHLDYHGDMESYEAAKWLLFSTHNTKSQIINADDAIGLKWLQRLPQACAVTMENKI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + + + + +G N+L+ + + ++ Sbjct: 242 PQDWQGPWLKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMATLLMMDYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ + A S P GR + + + +A L+ H +G Sbjct: 302 LNKLLAATSSLSPVCGRMEVFSAPNKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L + + ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S DV+V+ K Sbjct: 411 SSRALAIPGRPEAVTNTILQASPDDVIVIAGKG 443 >gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] Length = 490 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 150/479 (31%), Gaps = 58/479 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ G + + G+ ++++ P + F KG G F+ A+ +GA Sbjct: 3 LAELLKDWPCSVTGGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTT 122 +V + I IP V + L KLA T+IAITG+ GKTT Sbjct: 63 AIVSEESISLPIIDKEIPFVWVPNTALFLSYASAKLAA--FPAEALTVIAITGTNGKTTV 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFG 163 ++ L+++ K A IG+ I P+ + V Sbjct: 121 SHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQLTTLQAKELHPILKQCVQKGVTHV 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E S +G + V ++ HL + G+E AK + + +K Sbjct: 181 VLE--ASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKKLVLN 238 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + K SFG + D ++ + ++ + +Q V Sbjct: 239 GDDNFCRSVGIYDKK-------KSCSFGFDNHNDLHIQIVSESVGKTVLCLQTSASEHIV 291 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G + QN + +L V L ++ + + EGR ++ L + Sbjct: 292 EIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKIENPLGIDVYVD-- 349 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y +++A + V G ++ Sbjct: 350 --YAHTAEALQAVLQTFDH-----SKTIYLVFS----CGGNRDKAKRFAMGAVASKYADV 398 Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++L+ + + + + GD+V+V K Sbjct: 399 IYLTTDNPRDEDPIVINESIIAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLVAGKG 457 >gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] Length = 512 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] Length = 848 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 82/451 (18%), Positives = 143/451 (31%), Gaps = 38/451 (8%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88 + DSR I + F A +G + DG D+I AV GAG V + D +P + Sbjct: 60 LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRPEWDVPNQAI 119 Query: 89 DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY--------- 137 D+ LA A II +TG+ GKT+ + L A+ +++ Sbjct: 120 PDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIVGTV 179 Query: 138 ---ACIGSYNNHIGVPLTLA-----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 P ++ R + +S G ++ + AV Sbjct: 180 GNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRTAVF 239 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +EE + KA +F + D +L + +YS Sbjct: 240 TNLTRDHLDYHRSMEEYGAVKARLFHWQGLQNAVINTDDAFGQQLCAELKRSESSLHVYS 299 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 +G ++ AD ++ ++ + ++V S +G AQN LG + D Sbjct: 300 YGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAGGYD 359 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 A+ ALS P GR + +A ++ + G Sbjct: 360 FQAALNALSHIRPATGRMDCIIGEGKPLVVVDYAHTPDALEKALATLREIKQ-----PAG 414 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423 V G G L ++ V ++ + + D LP H Sbjct: 415 CLWCVFG----CGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPH 470 Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 471 PALVEADRKAAIEQAIAQAAPNDIILIAGKG 501 >gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter heparinus DSM 2366] gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM 2366] Length = 485 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 86/474 (18%), Positives = 157/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D+L + V V+ + DSR + AFFAIKG DGH +I V GAG Sbjct: 3 LQDILYGVTITDQIGVTNRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYIAATVSAGAG 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V+ ++ + + + V + AL ++A K + ITG+ GKTT Sbjct: 63 VVICE--VLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLTGITGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGIFELGMS 170 +L ++ I + NH P LA + VD + +S Sbjct: 121 LLFKLFRALGYKVGLISTVENHINDEVIPATHTTPDPLALNALLQDMVDAGCDYCFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 ++ + V + I HL ++ AK F+ L + N DD Sbjct: 181 SHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKKAFFDALPASAFALTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + A ++ + ADF+ + E S+ + L +V +G Sbjct: 241 NGMVMLQNTRAAKK----TYALKQLADFK----AKVIENSFKGLHLDIDDADVFFKLVGS 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + LS EGR + + Y P Sbjct: 293 FNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFDYITSSQHIIGIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 +++ +S + I E + G + ++ V L+ Sbjct: 349 DAVQNVLSTIQDIRKGTEQVITII-----GCGGDRDKTKRPIMAQVACDWSDKVILTSDN 403 Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + GD++++ K Sbjct: 404 PRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGKG 457 >gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella dysenteriae CDC 74-1112] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + ++ + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H IG N+L+ L + L + +K + P GR + + Sbjct: 301 SHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 511 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 78/480 (16%), Positives = 147/480 (30%), Gaps = 40/480 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + + +N IS +S+ + F + G + DG F + A++ GA Sbjct: 6 LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + I S+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGSAAKERIASIDRERILVIEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 +L L + K G ++ ++ + L Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILE 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225 +S + A+ T HL S +E K EK G L Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGICVL 245 Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N+DD + L K +L I + F + K S + ++ Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQ 305 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + I+ L + K + F GR ++ + N +L Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSRSLP 365 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + VL I EG+ I V G G L ++ Sbjct: 366 TIIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEELSD 420 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++++ + + + + ++ D+V++ K Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIAGKG 480 >gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii CDC 3083-94] gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii CDC 3083-94] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + ++ + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H IG N+L+ L + L + +K + P GR + + Sbjct: 301 SHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SMS-3-5] gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SMS-3-5] Length = 495 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHRCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 258 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 32/227 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I + F + G DG H F+ Sbjct: 1 MKLKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDI-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVD 161 GKTTT +L LS + N G P + + + D Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + + E+ L R + IAV T + HL +E Sbjct: 174 YCVMEVTSQGLHMERVKECNFK--IAVFTNLTQDHLDYHGTFDEYKH 218 >gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9301] gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9301] Length = 511 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 76/477 (15%), Positives = 145/477 (30%), Gaps = 40/477 (8%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LL + + +N IS +S+ + F + G + DG F + A++ GA + Sbjct: 9 LLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAI 68 Query: 70 VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125 + + IGS V D++ ++ R K +I +TG+ GKTT + Sbjct: 69 IGSAAKEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFL 128 Query: 126 LTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSH 171 L L K G ++ ++ + L +S Sbjct: 129 LEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSS 188 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFLNYD 228 + A+ T + HL S +E K +EK G LN+D Sbjct: 189 HSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVLNHD 248 Query: 229 DSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D + L K +L I + F + K S + +++ Sbjct: 249 DPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKEKIQLFV 308 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N + + I+ L + K + F GR ++ + +L Sbjct: 309 PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDVARSLPTVI 368 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + VL I +G+ I V G G L ++ ++ Sbjct: 369 VDYAHTP-DGLKKVLQSIKKLCKGKLITVFG----CGGDRDLGKRPLMGSIAEEFSDQLF 423 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + D+V++ K Sbjct: 424 ITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLIAGKG 480 >gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella denitrificans OS217] gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella denitrificans OS217] Length = 502 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/490 (14%), Positives = 145/490 (29%), Gaps = 58/490 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + D+L + +S+DSR + F A+ G DG +I A + Sbjct: 1 MMRLSDIL----APWFHYAGVESASSMSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQ 56 Query: 64 GAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGA---LNKLAVAARLRSKAT--IIAI 113 GA +V+TD S G + I + V + L+ +A + +I I Sbjct: 57 GAVAALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGI 116 Query: 114 TGSVGKTTTKEMLTIAL---------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 TG+ GKT+ +++ ++ + M DF + Sbjct: 117 TGTNGKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQLHDFDV 176 Query: 165 -----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +S G ++ V IAV T + HL + ASAK +F+ Sbjct: 177 KGADICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRLFQFPSL 236 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + DD+ + + + S + Sbjct: 237 KYALLNLDDDTGAQWFEELAATKRKGFSVS---PNAKACYYTDKLHFDDAGVQGDFYYHD 293 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-------FHPKEGRGKRYRC 332 E + +L + ++L A + +++ G+ R Sbjct: 294 FGENAVSQHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAGRMERF 353 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 +L QG ++D ++ + L + H G+ V G G L Sbjct: 354 SLPQGASLVVDYAHTPDAIE-----QALKALRIHCHGQLWCVFG----CGGDRDKGKRPL 404 Query: 393 AEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + + ++ + + L + + + + Sbjct: 405 MAQAAERFADKLMVTSDNARSEDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKA 464 Query: 444 GDVVVV--KS 451 GD+V++ K Sbjct: 465 GDIVLLAGKG 474 >gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli HS] gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 1_1_43] gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia sp. 4_1_40B] gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 196-1] gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli H736] gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H736] gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H299] gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli HS] gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 1_1_43] gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 196-1] gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Escherichia coli ETEC H10407] gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520] gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482] gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii B253] gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H736] gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H299] gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Escherichia coli UMNK88] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia coli] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR K + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMKVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 150/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E + D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKG 467 >gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 534 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 75/484 (15%), Positives = 141/484 (29%), Gaps = 51/484 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL++ + + G ++G+S DSR P + F IKG DGH ++ + KG Sbjct: 34 LADLVKPLLKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVS 93 Query: 67 LVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------------- 107 VV +++ + + IPV V D A LA Sbjct: 94 AVVAQYDCLSSEQKKLLTQIDIPVILVTDSRKAFAILASKYYNYPGDSLRVTGVTGTKGK 153 Query: 108 ---ATIIAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 +I S GK M+ + + + + L R+ Sbjct: 154 TTTVNLIDKLLSEGKEVKTGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASH 213 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + SH V IAV T +AP HL + ++E K IF Sbjct: 214 VTLEVSSHAISQLR-IAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEK 272 Query: 224 F---LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + + + + G +NA + + + +++ + Sbjct: 273 NDKPKLAVINLDDKYASYMLEQPAVQVLTHGFDENAHVKGKIINTAETFTELKITSPWGN 332 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V IG N+L + + L R+ FT Sbjct: 333 FTVKTPLIGKFNCYNLLAAITVALFEGIPASKIQTILEQ---PINIPGRFERIDLGQEFT 389 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++ + + + VL + G+ V G GE +S + S Sbjct: 390 VVVDFAHTTDS----LQEVLQSLRQMVSGKIGVVFG---CGGERDKSKRPKMGRAASDLG 442 Query: 401 ISHVWLS-----GFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++++ + + + + + +GD V++ Sbjct: 443 -DKIFITSDNPRAEDPQKIVQDILSGCDVNNNEKIQIELDRAQAIEKSLNWAREGDAVLI 501 Query: 450 --KS 451 K Sbjct: 502 AGKG 505 >gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Citrobacter sp. 30_2] gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Citrobacter sp. 30_2] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA K ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165 TTT ++L + +T N +G + + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLAAQGATVG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + K + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFTSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTATQLQPVCGRMEVFSAPGKTTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKG 467 >gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] Length = 491 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 162/474 (34%), Gaps = 43/474 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL ++ + V+ + DSR ++ +AF IKG +DGH+FI V KG Sbjct: 1 MKLKDLLTKLEYKVVKGSDTIEVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFIRDVVSKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A M + V VDD AL ++ K + ITG+ GKTTT Sbjct: 61 AVA---VVVMEDVEVDEDVTVVKVDDTRLALACMSADYFGNPAEKLITVGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 M+ L S+ IG+ IG +T A+ + + E + Sbjct: 118 TYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKMVEQGCKCVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + + T I P H+ + + Sbjct: 178 VSSQGLMLHRVSGFTFDYGIFTNIEPDHIGP-----NEHKDFDDYLHCKSMLLKQCKHGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + I ++G + + DF+ + K ++ + V K I Sbjct: 233 VNMDADFIDRVLEGHTCDIETYGVNGDYDFKAQDIKLFTKPGCLCVSYDLKGKMDFPVEI 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L ++I + + K + + +G+ +++ F +ID ++NA Sbjct: 293 HVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVKVKGRVEIIPISKRFTLMIDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406 + S+L+ + + R + V G G S+ ++ EV S + + Sbjct: 353 -----MSLESLLTSLKQYNPKRLVTVFG---CGGNRSKERRFEMGEVSSRLSDFTIVTSD 404 Query: 407 ---SGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + + DGDV+++ K Sbjct: 405 NPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAGKG 458 >gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pantoea vagans C9-1] gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pantoea vagans C9-1] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 132/479 (27%), Gaps = 49/479 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL G + P + +++DSR A + F A+ G DG FI A+ +G Sbjct: 5 NLRDLL----GPWVPGAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 VV + A+ G + +PV + + L+ LA + I + Sbjct: 61 AAVVAEAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165 T +A + G+ L + Sbjct: 121 TTTTQLLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELAEKGATLT 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + + + + G L Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMP-SYESAKWLLFSEHQVGQAIL 239 Query: 226 NYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 N DD A+ T+ + + + + + E+ Sbjct: 240 NADDEVGRRWLARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEI 299 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N+L+ L + L + T I P GR + + A Sbjct: 300 DSPLMGAFNVSNLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGKPTVVVDYA 359 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A L H +G+ + G G L ++ Sbjct: 360 HTPDA-------LEKALEAARLHCKGKLWCLFG----CGGDRDKGKRPLMGAIAEQFADV 408 Query: 404 VWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + L D+V+V K Sbjct: 409 VVITDDNPRSEDPQAIVKDILTGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKG 467 >gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 526 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 77/505 (15%), Positives = 141/505 (27%), Gaps = 70/505 (13%) Query: 4 LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + T +L + G I P V I ++++++ F + G H G F + Sbjct: 1 MATLQELAEISGGRLIRTDDPDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQFADSSS- 59 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 A V+ + D V + +P+ VDDV L +++ A T+I ITG+ GKT Sbjct: 60 --AAAVLTDHDGVEKVTREDLPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKT 117 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE-- 166 TT M+ AL + IG+ I P A + G+ Sbjct: 118 TTSYMVEAALLHHGISTGLIGTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVV 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS-----AKAEIFEGLEKTG 221 + +S +A T ++ HL +E+ K + E + Sbjct: 178 MEVSSHAIALGRVLGTHFSVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAETSV 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + S D + Sbjct: 238 VCIDDAWGQRLATMLPHPFTVSTEAASEHDASLQPDVWAGPSSVMDNGVQTAELYGFGAN 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E+ H L + ++ + A+ G+ R Q F + Sbjct: 298 EMTLHIPMPGRFNVANAMLAMGLLVKTGMKA-EDAIEGLSTVTVPGRLERIDCGQDFMAV 356 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + VL + H GR V+G G + + Sbjct: 357 VDYAHKPGAIAA-----VLDTLRAHVRGRIAIVVGA----GGDRDHSKRPIMGREAALRS 407 Query: 402 SHVWLSGFHVL------------ALKDALPRSIHVHYSE--------------------- 428 V ++ + A + + V ++ Sbjct: 408 DLVIVTDDNPRSEDPASIRQQVVAGAKEVADHVDVDRADEPRNKVKTEGSEHRPTIREIG 467 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 GD V+V K Sbjct: 468 DRREAIRAAIQWTQPGDAVIVAGKG 492 >gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] Length = 496 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/476 (15%), Positives = 151/476 (31%), Gaps = 42/476 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ ++ V+ I+ DSR+ F A KG D H F + +++G Sbjct: 1 MNASALFEKIRVKNVIGTLDKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 +VVVN ++ + V D L + LA + T +TG+ GKT+ Sbjct: 61 CSIVVVNRELE---LDGEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFE--------------- 166 M+ + + K A + A + + Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMT 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G V +A+ + + HL +E AK+ +F L + Sbjct: 178 MEVSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKY 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + ++ ++++G A F + + + + V Sbjct: 238 VVLNNDDDFSHYLASVTPYEVFTYGIDNEAQFMAKNIDESLQGVEFDFSTPFGDYRVKSP 297 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N++ + V A ++ I A++ P L +L + Sbjct: 298 YVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPV-------EGRLEVLDPSLPIDLI 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + ++ + P + + I ++G M GE + ++ V +V Sbjct: 351 IDYAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVACRA--DYVIF 405 Query: 407 SGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + + H +Y + GD VV+ +S Sbjct: 406 TPDNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIKHAIDVAEPGDTVVL-ASKG 460 >gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrospira platensis str. Paraca] Length = 498 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 84/461 (18%), Positives = 157/461 (34%), Gaps = 45/461 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79 + G++ +S + P + F + G DG DF A+ GA +V+ + Sbjct: 21 DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80 Query: 80 SLSIP-VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK- 135 S +IP V D+ A ++A A ++ +TG+ GKTTT ++ L+++ K Sbjct: 81 SDTIPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKP 140 Query: 136 -------TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTH 180 G + + FG+ E+ L + R L Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGC 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T + HL +++ AKA +F G +N DD + + L A+ Sbjct: 201 PFQ--VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMARL- 257 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + D + S +G + N+L L Sbjct: 258 -GGDRVWSYSVSDPSTDIWADSLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAAL 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G L D+ + +L F GR +R + + Q ++D ++ + ++L Sbjct: 317 GAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQNITVIVDYAHTPDSLE-----NLL 371 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416 P GR I V G G+ ++ + ++ + + V S + Sbjct: 372 KASRPFIPGRMICVFG---CGGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRILQ 428 Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P + + GD V++ K Sbjct: 429 DVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGKG 469 >gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 25 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 84 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 85 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 432 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467 >gi|254821976|ref|ZP_05226977.1| hypothetical protein MintA_18732 [Mycobacterium intracellulare ATCC 13950] Length = 419 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 155/368 (42%), Gaps = 23/368 (6%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 I+ ITGS GKT+TK+++ L + + A GS+NN +G P T+ R + DF + E Sbjct: 32 GLRIVGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATPETDFLVLE 91 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + H G I L + P I V+ + AHL F E IA K+E+ + + ++G + LN Sbjct: 92 MSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIAQTKSELPQSVPESGVVILN 151 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------S 280 DD + + A ++ + S E + L + Sbjct: 152 ADDPAVAAMAGVTAARVVRVSRAENTSAGPSQLWAGPVSLDEVARPCFTLHHRDASGTTQ 211 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +V G H N L + ADVD AL+ P + T Sbjct: 212 AQVRLGVYGDHQVTNALCAAAVALECGADVDQVAAALAGAGPVSRHRMHVTTRADGV--T 269 Query: 341 LIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 +ID++YNANP SM+A + L+ I P + R AVLG+M E+GE + + H + Sbjct: 270 VIDDAYNANPDSMRAGLQALAWIAHGGGDRPAEKRRSWAVLGEMAELGEDAIAEHDRIGR 329 Query: 395 VLSLYNISHVWLS--GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGD 445 + ++S + + G + A+ + +++ L GD Sbjct: 330 LAVRLDVSRLVVVGSGRSMSAMHHGAVMEGSWGSADKGAVNVADGEAALALLRAELQPGD 389 Query: 446 VVVVKSSN 453 VV+VK+SN Sbjct: 390 VVLVKASN 397 >gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O26:H11 str. 11368] gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O26:H11 str. 11368] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 TAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] Length = 492 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 151/475 (31%), Gaps = 49/475 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + + + + GI+ S + P F KG +D H+ ++KGA Sbjct: 5 NLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEIIKKGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +VV + S+ P V D A + L+ K I ITG+ GKTT Sbjct: 65 SFLVVEHPI-----SVDFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITGTNGKTTAA 119 Query: 124 EMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 + L ++ +H + + + + Sbjct: 120 HLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDRSGKHFVME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S V+ IA +T I HL +E K IF+ L++ G ++ + Sbjct: 180 VSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEFGIAVVSDE 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 +G S+N+D+++ + + ++ + + + Sbjct: 240 FEHI--------VNKRVKKVIYGMSENSDYRILSAEIDKFGTNFVLKSRFGEHKCSINIP 291 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H A N + + + L D+++ I+A+ F EGR + R G ++D +++ Sbjct: 292 GIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIVVDFAHSP 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + L GR I V G G + + + ++ Sbjct: 352 DALE-----KTLITARKIASGRIITVFGA----GGQADKGKRPMMAEVVCRYSDVSIITT 402 Query: 408 ----GFHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 G + + +P + GD+V+V Sbjct: 403 DDPRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRGDMVIVAG-RG 456 >gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IAI39] gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli IAI39] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1012] gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1012] gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella boydii ATCC 9905] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] Length = 493 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 71/481 (14%), Positives = 155/481 (32%), Gaps = 45/481 (9%) Query: 1 MNPLWTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M+ T LL + + + V+ + +DSR + P F A++G DG FI Sbjct: 1 MSNTITLATLLAPWVD-LAANPFGRLPVSQLELDSRKVTPGATFVAVQGHAVDGRKFIAS 59 Query: 60 AVQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 A+ KGA VV + IPV ++ + L+ LA +I +TG Sbjct: 60 AIDKGAAAVVAQESSEHPHGSIEVQAGIPVVYIESLDSQLSALAERLYPLQSMKLIGVTG 119 Query: 116 SVGKTTTKEMLTIA------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--- 166 + GKTT +++ +++ T V T + + + E Sbjct: 120 TNGKTTITQIIAQWLGLVEKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQS 179 Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + +S G ++ + ++V T ++ HL +EE AK + T Sbjct: 180 ADYTAMEISSHGLVQGRVKTLPFAVSVFTNLSRDHLDYHGTMEEYEQAKLTL-----FTE 234 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + + A+ + ++ K+ +AD + + +S + + G Sbjct: 235 HKTAHAVINVDDPVGARWASTLANSVQVSLKTLDADNAIYASQVDYSESGISLSFSGMYG 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + + + ++LT +D + G+ + Sbjct: 295 DGKLDVPLIGEFNANNVLVALATLLTLGIDKQRLVETASQLTPVIGRMELFQTPSKAKVV 354 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + L + H +G+ + G G + + Sbjct: 355 VDYAHTPDALE-----KALLALRVHCKGKLWVIFG----CGGDRDVGKRPMMAEIGERLA 405 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V ++ + + + + F S D++++ K Sbjct: 406 DKVIIADDNPRSEDPARIVEDMLAGMSQPDLASVEHDRFNALQFALSQSQAQDIILLAGK 465 Query: 451 S 451 Sbjct: 466 G 466 >gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863] Length = 495 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 467 >gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arsenophonus nasoniae] Length = 475 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 144/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR +A + F A+KG DG +I A+ +G ++ G++ +PV Sbjct: 6 TLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGVPVI 65 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSY 143 ++D+ L+ LA K +I +TG+ GKTTT +++ + + Sbjct: 66 YINDLNNQLSLLAGEFYQHPAAKLRLIGVTGTNGKTTTTQLIAQWAKGLGEVSAVMGTVG 125 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ + AV T Sbjct: 126 NGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFTAAVFT 185 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL ++ A+AK +F + I D++ + L+ A + Sbjct: 186 NLSRDHLDYHGDMQNYAAAKWLLFSTHKSDKQIINVDDETGLQWLEKLPQACAVSMENRI 245 Query: 251 GKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + L + + + + + +G N+++ + + ++ Sbjct: 246 PTDWQGAWMLVEQVDYHDRGATIHFNSTWGKGSLKSPLMGAFNVNNVMLAMATLLMMGYP 305 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + IK+ P GR + + + +A LS + H G Sbjct: 306 FEAVIKSSHAIQPVCGRMEVFTSPGRPTVVVDYAHTPDA-------LEKALSALRLHCRG 358 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 R V G G L ++ V ++ + + Sbjct: 359 RLWCVFG----CGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDILSGFLD 414 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + DV+++ K Sbjct: 415 AGRAMPIVGRVEAVTSAIMQANADDVILIAGKG 447 >gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia aldovae ATCC 35236] gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia aldovae ATCC 35236] Length = 471 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 70/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86 ++DSR A + F A+ G DG +I A+ +G V+ + + VA S +PV Sbjct: 2 TLDSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + ++ L+ LA + ++ +TG+ GKTTT ++L ++ + Sbjct: 62 YLRNLNQHLSTLAGQFYHQPGDALRLVGVTGTNGKTTTTQLLAQWSQALGDTSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F + I D+ L A+ + + Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMEGNV 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + ++ +G N+L+ L + L Sbjct: 242 PTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSLGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A P GR + + + +A L+ H +G Sbjct: 302 LAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H + DVV++ K Sbjct: 411 AGHAQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443 >gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli str. K-12 substr. W3110] gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli BW2952] gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli] gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. MG1655] gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli str. K12 substr. W3110] gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli BW2952] gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1] gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli DH1] Length = 495 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli WV_060327] Length = 495 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679] gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] Length = 492 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 80/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91 DSR I + F A + + DG +I AV GA V + D A +P G+ D+ Sbjct: 29 DSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145 LA + +TG+ GKT+ + L A + Sbjct: 89 KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148 Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 + PVDV ++ + +S G + + V A+ T + Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +E + K+ +F + D EL +YS+G S++ Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ + S+ + + +G AQN+ + ++ +D + Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR + Y P +++ A+S L +I P G V Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428 G G L ++ V ++ + + D LP E Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 + D++++ K Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464 >gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] Length = 498 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 166/474 (35%), Gaps = 32/474 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +++ I+ +I VN IS DSR I + F AIKG DGH++I +++G Sbjct: 1 MNILEVINNIKIKTIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LV+ + +I + ++ V ++ + +A A +A+TG+ GKT+ Sbjct: 61 AALVIASRYEDYNIENCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSIST 120 Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169 ++ L ++ ++ A I + + P+ DV I EL Sbjct: 121 LVHNMLRNLDESSAFIGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIKNLAFEA 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + V +A+ T + HL ++ A K+ +F L + Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVL 240 Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ K + ADF KQ E + Q S E Sbjct: 241 NKDDDYYGIMSKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPEGTFECT 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ M+ + I +++ L P G L G I + Sbjct: 301 TNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILGDGLPIDIISDFAH 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P K + +I +G+R +L M G S + E++S +V ++ Sbjct: 361 TPDGYKKLLEATREIR---KGKRTLLLTGMG--GGRDISKGPLIGEIISEA--DYVIITT 413 Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454 V L A+ + + E + GDVV++ +S Sbjct: 414 DSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVIL-ASKG 466 >gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 505 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 73/484 (15%), Positives = 144/484 (29%), Gaps = 49/484 (10%) Query: 4 LWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + LL + VN I++DSR +A F A+KG DG FI A+ Sbjct: 7 MMKLEMLLSPWLTNKALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFIDTAI 66 Query: 62 QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115 Q GA ++ D +A G + + + D+ L+ +A + A+TG Sbjct: 67 QAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALYAVTG 126 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165 + GKTT ++L + Y G+ L I Sbjct: 127 TNGKTTISQLLAQW--ANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGLVE 184 Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +S G ++ + ++ T ++ HL ++ A AK +F + Sbjct: 185 QGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEHDA 244 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 I D E L HA+ + + + + ++ + Sbjct: 245 GVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAFDSSW 304 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + +G N+L+ L + + + S GR + ++ Sbjct: 305 GQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRMEVFQDTDKAMM 364 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + +A L + H +G+ + G G S + ++ Sbjct: 365 VVDYAHTPDA-------LEKALQALRVHCDGKLWCIFG----CGGDRDSGKRPMMAEVAE 413 Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L+ + + L + D+++V Sbjct: 414 RLADQIILTDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILV 473 Query: 450 --KS 451 K Sbjct: 474 AGKG 477 >gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330] gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330] gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12] Length = 511 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 182/392 (46%), Gaps = 9/392 (2%) Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V ++ S++ P F V+D L +L+ R ++AITGS GKT+T+ M+ Sbjct: 96 VIVTEKPIMD--PSVTTPQFIVEDSWKFLLELSAKLRSCFVNPVVAITGSAGKTSTRMMI 153 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RP 184 T L K ++N VPL ++++ + D E+ ++ L + + Sbjct: 154 THLLQEEKVLENRG-NHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQ 212 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHAL 242 IA++T+I AHLS+ + +A KA+IFEGL++ G +N D F +L + + Sbjct: 213 DIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKR 272 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K + + D +++ Q E + V G+ + + M N L L + Sbjct: 273 TSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIV 332 Query: 303 VSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 L ++ IK F P + + + FT ID+++NA+ SMK AI+ Sbjct: 333 AKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFD 392 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420 I P +G ++ +LG + ++G+ ++ H + E L+ +H++ G H L + + Sbjct: 393 GIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKT 452 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + +++ L +++ L++ +V+ K S Sbjct: 453 DDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 484 >gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR] gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR] Length = 495 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 89/482 (18%), Positives = 154/482 (31%), Gaps = 50/482 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL+ I G + + G++ DSR + P AF I+G DGH F +AV+ Sbjct: 1 MRRLTDLLKNIYGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVEN 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +++ + + V +D AL + A K II +TG+ GKTT Sbjct: 61 GATVIIAEKPVTVPSSVTVVTV---EDTREALAYMGAAFYDYPGDKLNIIGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-------------RMPVDVDFGIF 165 T ++ L K I + +P+T + VD+ + Sbjct: 118 TTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMVDAGVDYAVM 177 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223 E+ SH E+ + A+ T I HL ++ A K I G + Sbjct: 178 EV-SSHALELNRVAGC-EYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKSR 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + + + ++G AD + K S+ S+++ Sbjct: 236 NKYGIINIDDSKGQSFLEVTHGQVITYGIQSAADVRAEKIDLRSDGVSFTAVTPRGSVDL 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + G N L + + +AL GR ++ Sbjct: 296 KLNLTGLFNVYNSLAAVASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQPFAVLVDYA 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + +VLS +GR I V G G + +S Sbjct: 356 HTPDG-------LENVLSAAREFTKGRLITVFG----CGGDRDRTKRPIMGEVSAKLSDF 404 Query: 404 VWLSGFHV---------LALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 L+ + +++ + I E + GDVVV+ Sbjct: 405 TVLTSDNPRSESPAEILRDIEEGVKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAG 464 Query: 450 KS 451 K Sbjct: 465 KG 466 >gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 495 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINSNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGGIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-272] gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-227] Length = 495 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + A Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAAGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 5 str. 8401] gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401] Length = 495 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] Length = 507 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 155/472 (32%), Gaps = 49/472 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + + I+ +S+ + F AIKG DGH +I A++ A +++ + Sbjct: 18 EITKESLKLEIKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADK 77 Query: 77 SIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128 S + ++ G + L ++ + IAITG+ GKTTT +L Sbjct: 78 SFINSLKEKYKNVCFVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKA 137 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARM------------PVDVDFGIFE--LGMSHLGE 174 AL S K A IG+ N IG + + + S Sbjct: 138 ALESAKNKIALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYKKNVSHIVMEASSQAL 197 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + A+ T + HL ++ AK ++F L+++ + Sbjct: 198 AMDRCDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTD 257 Query: 235 L---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGY 290 + ++G ++ AD+ + S+ S E + +V +G Sbjct: 258 YFKEIKNYIKKLDLKMVTYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGE 317 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L L D++ IKA+ R+ + ++ Y+ P Sbjct: 318 FNVVNSLSVLAYAYEYKLDIEKVIKAIRKVQ----VSGRFEIVSGEKCPFIVAVDYSHTP 373 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406 S++ + ++ P+ I V G G + ++ L Sbjct: 374 DSLENILVESRKLKPNR---VIVVFG----CGGDRDRKKRPIMASIAEKYADISILTTDN 426 Query: 407 -----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +++ S + + + +F I+ + D+V++ K Sbjct: 427 QRTESIEQIMSDIENGFTHSNYKKIIDRKEAIFEAIKE-AKENDIVIIAGKG 477 >gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae O395] gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] Length = 512 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase; AltName: Full=D-lysine-adding enzyme; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] Length = 490 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 90/485 (18%), Positives = 158/485 (32%), Gaps = 57/485 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL+ ++ + G+S S + + F +G +D H+ I ++KGA Sbjct: 9 NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL------------------RSK 107 VVV ++ L P V D K+A + Sbjct: 64 VAVVVEREI-----DLDFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 I + S+G+ + + Y I + + + F E+ Sbjct: 119 MMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKENREGGGKFFALEV 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 SH + + VR + + T I+ HL E AK +F+ L+ G LN Sbjct: 179 -SSHALVQQRV-EGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN- 235 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 E L + +FG SKNAD++L + E + ++ ++V Sbjct: 236 -----ESLADAFNRKS--RKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRA 288 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N + + L D +L F EGR + R A G ++D +++ Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHS 348 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +L + +GR I V G G S + ++ V L+ Sbjct: 349 PDALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLADVVILT 399 Query: 408 -----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G + L + + + GD VV+ Y Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERY 458 Query: 459 RLINL 463 ++I+ Sbjct: 459 QIIDE 463 >gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] Length = 509 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 39 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 98 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 99 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 158 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 159 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 218 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 219 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 278 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 279 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 336 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 337 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 389 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 390 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 445 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 446 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 481 >gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Vibrio cholerae LMA3894-4] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA +V+ D G Sbjct: 25 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYR 84 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 85 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 432 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467 >gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] Length = 499 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA +V+ D G Sbjct: 29 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYR 88 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 89 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 208 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 269 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 326 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 327 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 379 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 436 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471 >gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] Length = 512 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/456 (16%), Positives = 145/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI +A+ +GA +V+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 508 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 139/357 (38%), Gaps = 14/357 (3%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPV 158 R R I ITGS GKT+TK +T LS SYN +GV + + Sbjct: 149 RKIRNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKD 208 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + E+G G+I+ L L P I VIT+I P HL F IE +A K E+ EGL Sbjct: 209 THQIFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLP 268 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + G LN D+ + K + S + K + + V Sbjct: 269 EDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIINTRQGLKFDAVTED 328 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G ++ +G H N+L + + L + + + LS P R + Sbjct: 329 GMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRL---QLISTPH 385 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+ID+++N+NP L+ + RRI V M E+GE + +L + ++ Sbjct: 386 GVTVIDDAFNSNPEGA---KEALACLKEMDAKRRIIVTPGMVELGEKEYEENKNLGKNIA 442 Query: 398 LYNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L G + + L + V +D +Q+ L GDVV+ Sbjct: 443 EV-CDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGDVVLF 498 >gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 301] gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 2457T] gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301] gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Shigella flexneri 2002017] gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2747-71] gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri VA-6] gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-304] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] Length = 501 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 83/479 (17%), Positives = 150/479 (31%), Gaps = 48/479 (10%) Query: 12 QAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 +A + Q V+G + DSR I P + F A +G + DG ++I A+ +GA V Sbjct: 5 KAAPAQPVLPALQHTVSGCQLLHADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFV 64 Query: 69 VVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125 + D +P G+ D+ +A A II +TG+ GKT+ + Sbjct: 65 YWDDDGAFQWQPEWRVPNQGISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQW 124 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGM 169 L A+ ++++ +C G L + + + Sbjct: 125 LAQAIDNLEQAPSCAIIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEV 184 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNY 227 S G ++ + V H AV T + HL + E A + ++GL+ + Sbjct: 185 SSHGLAQYRVNGVPFHTAVFTNLTRDHLDYHGSMAEYGAAKERLFYWQGLQNAIINSDDA 244 Query: 228 DDSFFELLKAKS------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + Y++G ++ AD + + E + + Sbjct: 245 FGAALAAELKQHSGSLKTEGCNEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEG 304 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +G AQN LG + D A+ ALS P GR Sbjct: 305 SAQTRLLGRFNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMDCIIQPDKPLVVVD 364 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A ++ + E R V G G L ++ Sbjct: 365 YAHTPDALEKALTTLREIQQ-----PESRLWCVFG----CGGDRDRGKRPLMGEVAARLA 415 Query: 402 SHVWLSGFHVL------ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + D LP H + D+V++ K Sbjct: 416 DKAVVTSDNPRTEDPQAIIADILPAVPHPALVEADRKAAIEQTIAQAQAQDIVLIAGKG 474 >gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli CFT073] gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 83972] gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli CFT073] gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 83972] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Escherichia coli O127:H6 str. E2348/69] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1357] Length = 490 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 70/468 (14%), Positives = 144/468 (30%), Gaps = 43/468 (9%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 + P + +++DSR A + F A+ G DG +I A+ +G ++ Sbjct: 6 APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE 65 Query: 76 ASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129 A+ G + +PV + + L+ LA ++ +TG+ GKTTT ++L Sbjct: 66 ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 125 Query: 130 LSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEI 175 + + + N +G + E + +S G + Sbjct: 126 SQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLV 185 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + ++ +V T ++ HL +E +AK ++ I D+ L Sbjct: 186 QHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWL 245 Query: 236 KAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A+ + + + + + + + E+ H +G Sbjct: 246 AKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 305 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L+ L + L + +K + P GR + + + +A Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA------ 359 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 L H G+ V G G L ++ ++ + Sbjct: 360 -LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 414 Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + H E + DVV+V K Sbjct: 415 EPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462 >gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] Length = 512 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI +A+ +GA LV+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + E+ IG A N+L+ L + L Sbjct: 282 VAKPNTAQAIWARH--VAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 2362-75] gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 2362-75] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UTI89] gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli APEC O1] gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli S88] gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 3_2_53FAA] gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli UTI89] gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli APEC O1] gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli S88] gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 3_2_53FAA] gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IHE3034] gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 25 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 84 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 85 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 432 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467 >gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 536] gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli F11] gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli NC101] gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA206] gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia coli 536] gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli F11] gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82] gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli NC101] gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O83:H1 str. NRG 857C] gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA206] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] Length = 499 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 29 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 88 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 89 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 208 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 269 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 326 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 327 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 379 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 436 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471 >gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus opacus B4] gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus opacus B4] Length = 524 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 80/490 (16%), Positives = 147/490 (30%), Gaps = 57/490 (11%) Query: 6 TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHA 60 T L G V G+ D R+ I + F A+ G G +F A Sbjct: 16 TVSALAALAGARVEAPSGTAEHVIVTGV--DLRAQGIVEGDLFAALPGARAHGAEFAADA 73 Query: 61 VQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 + +GA ++ + +A + +L PV DD G L +L+ R K +I ITG+ Sbjct: 74 LDRGATAILTDEAGLALVSALGTDAPVLVHDDPRGVLGELSATIYGRPSEKMQVIGITGT 133 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDV 160 GKTTT ++ AL++ +T +G+ + L + + Sbjct: 134 SGKTTTSYLVEGALNAAGRTTGLVGTIETRMSGRRVPSALTTPEAPQLHALFAVMLEQGI 193 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLE 218 D + E+ SH + + VR + T ++ HL E+ A A+ E Sbjct: 194 DTVVMEV-SSHALSLGRV-DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAAESSV 251 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + DD + + + + S + Sbjct: 252 HAQHAVICVDDVWGRRMAEVARGAHSIVTTVATTPETGGAVWTAGPATVSASGSQKFALT 311 Query: 279 KSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + N+ V++ A++ + G+ R Q Sbjct: 312 TAEGTTLDVELRLPGQYNVANASLAVALCAVLGVDPRDAVAGIAGVDVPGRVQRIDRGQD 371 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F ++D ++ V++ + GR V+G G + L + Sbjct: 372 FLAVVDYAHKPAAVEA-----VIATLREQARGRVAVVVGA----GGDRDAGKRPLMGAAA 422 Query: 398 LYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVD 443 + ++ ++ A+ V Sbjct: 423 ARGADLLIITDDNPRTEDPATIRAAIREGALGVPESERGQVWEVADRAKAIADAVGWAQA 482 Query: 444 GDVVVV--KS 451 GDVV+V K Sbjct: 483 GDVVLVAGKG 492 >gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] Length = 512 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 146/456 (32%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI +A+ +GA LV+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + + P GR + ++ + +A L + H Sbjct: 340 GFEKNALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] Length = 512 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/456 (16%), Positives = 145/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI +A+ +GA +V+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] Length = 498 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 165/474 (34%), Gaps = 32/474 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 D++ I+ +I VN IS DSR + + F AIKG DGH++I +++G Sbjct: 1 MNILDIIDNIKVKTIYGNLPESVNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A LV+ + ++ + ++ V ++ + +A S +A+TG+ GKT+ Sbjct: 61 AALVIASRYENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSIST 120 Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169 ++ L ++ ++ A I + + P+ DV I EL Sbjct: 121 LVHNMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEA 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD- 228 S + V +A+ T + HL ++ A K+ +F L + Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVL 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + K S L + I ADF KQ E + S E Sbjct: 241 NKDDSYYKVISKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGTFECT 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ M+ + I +++ L PK G + I + Sbjct: 301 TNYIGDFMVSNVLAALIAVWVKGYSVEQLVAILPKLGALYGRMEIIGDDLPIDIISDFAH 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P + + ++ +G+R ++ M G S + +++S +V ++ Sbjct: 361 TPDGYEKLLEATREMR---KGKRTLLVTGMG--GGRDISKGPLIGDIISEA--DYVVITT 413 Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454 V L ++ + + E I GDVV++ +S Sbjct: 414 DSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSEPGDVVIL-ASKG 466 >gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] Length = 506 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 86/484 (17%), Positives = 159/484 (32%), Gaps = 47/484 (9%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +LL I P V GI +S + P + F + G DG +F A+ Sbjct: 1 MKLRELLAKIANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFWESAI 60 Query: 62 QKGAGLVVVN------TDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAI 113 GA +++ + V DD + A A K +I + Sbjct: 61 ASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFYDYPAQKLRLIGV 120 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------- 166 TG+ GKTTT ++ L+ + P F + Sbjct: 121 TGTNGKTTTTHLIEFLLAHSSSPIPTALLGTLYARWPGFEQTASYTTPFAVQLQQQLQLA 180 Query: 167 ---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + +S + +AV T + HL +++ SAKA++F Sbjct: 181 VKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKAKLFSSD 240 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G +N DDS+ E L + + ++ +ADF + + Sbjct: 241 YLKGRAIINADDSYGERLIQQL--PTEQVWSYSIQNPSADFWTKDLSYEPTGVRGIMHTP 298 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + +G + N+L +G V L D++ AL+ F GR +R + Q Sbjct: 299 VGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQPEQD 358 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++D ++ + ++L P EG+ I V G G+ ++ + ++ + Sbjct: 359 ISVIVDYAHTPDSLE-----NLLRASRPFIEGKMICVFG---CGGDRDRTKRPKMGKIAA 410 Query: 398 LYNISHVWLSG----FHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V S + ++ + +P+S+ GD V++ Sbjct: 411 QLADVAVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLI 470 Query: 450 --KS 451 K Sbjct: 471 AGKG 474 >gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 509 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 82/491 (16%), Positives = 157/491 (31%), Gaps = 59/491 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MNP ++ ++ +S DSRSI + FFA G DG FI A Sbjct: 3 MNP----EHIVDWLRAT-------APAAELSSDSRSIVAGDVFFAYPGDAADGRRFIDDA 51 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 +++GA VV D + G+ P+ V + ++A ++ +AITG+ G Sbjct: 52 IERGAVAVVCEADGLVWHGAADFPLLAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNG 111 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFGIF---------- 165 KT+ + L ALS + A IG+ G LA I Sbjct: 112 KTSCSQWLAAALSRLTGPCAVIGTLGTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRR 171 Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + S +G + + + +A+ T HL + +AK +F+ Sbjct: 172 AGASALAIEASSIGLDQGRLNGLPVQVALFTNFTRDHLDYHGDMATYEAAKTALFDQPGL 231 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWMEV 274 + D LL + + + + + + ++ Sbjct: 232 QHAVLNLDDAMGLRLLAHLQRTAPQLALTGYTLTDLQPAGITVLRAGDIRSSHAGTSFQL 291 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +M V +G N+L +G++ + + A+ GR + Sbjct: 292 MTAAGTMLVRTRLVGSFNVSNVLGIIGVLLAQDCPLRAIVDAIETLTAVPGR---MQQFG 348 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 Q ++ + Y P ++ ++ L Q++ G+ V G G Sbjct: 349 GQDAPLVVID-YAHTPDALDKTLAALQQVAAQRHGKLWCVFG----CGGDRDPGKRPQMG 403 Query: 395 VLSLYNISHVWLSG-FHVLALKDALPRSIHVH-----------YSETMDGLFLFIQSSLV 442 + +L + S + +++ E L+ Sbjct: 404 LAALAADEIIITSDNPRSEVAAAIIAQTLQGTDERADSHAVPLVIEDRAAAILWAVRHAA 463 Query: 443 DGDVVVV--KS 451 + DV+++ K Sbjct: 464 NADVILLAGKG 474 >gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] Length = 499 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 76/484 (15%), Positives = 152/484 (31%), Gaps = 50/484 (10%) Query: 1 MNPLWTFHDL----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 MN +L L+ + + +DSR I + F AI+G DG F Sbjct: 5 MNTQTALSELIAPWLELTDPKL----ASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQF 60 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIA 112 I A+ +GA V+ D + G + ++PV + ++ L+++A +I Sbjct: 61 IDKAIAQGANAVLAEADAHHAHGQVEYREAVPVMYLSELDQHLSEMAGRLYGGHHNQLIG 120 Query: 113 ITGSVGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD----- 161 +TG+ GKTT +++ L ++ T T + + Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180 Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 L S G ++ + V + ++ HL +E A+AK +F Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 I D + +K A+G+ + ++ + + + + Sbjct: 241 CQNAIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAR--EVAYAESGITLNFESSW 298 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 E+ IG A N+L+ L + L + + P GR + ++ Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + +A L + H G+ A++G G + ++ Sbjct: 359 VVDYAHTPDA-------LEKALRALRVHCAGQLWAIVG----CGGDRDRGKRPMMAAIAE 407 Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V L+ + + L H + D++++ Sbjct: 408 QFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALKHAGAQDIILL 467 Query: 450 --KS 451 K Sbjct: 468 AGKG 471 >gi|116070403|ref|ZP_01467672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. BL107] gi|116065808|gb|EAU71565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. BL107] Length = 310 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 20/325 (6%) Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 +NN IGVPLT+ + E+GM GEI L+ P +AVIT I AH+ Sbjct: 1 EHNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAVITNIGTAHIGRLG 60 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 E IA+AK EI L+ G + + D+ E +K + + + + Sbjct: 61 SREAIAAAKCEITAALKPDGVVVIPAGDALLESALSKVWSGRVVRVRLADDTPV------ 114 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 L+ + + G H A+N+L+ L + ++ A+ V Sbjct: 115 --AADCIGVIDAGHLEVGAHRLPLPLEGRHNARNVLLALAVAD-QLGVDSASLNAMEVSV 171 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 P + + L TL+DE+YNA+P ++ AA+++L GRR AVLG M E+ Sbjct: 172 PGGRNRRLVQGRL-----TLLDETYNASPEAVMAALALL----SSQPGRRFAVLGTMLEL 222 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439 G S H D+A + + + + G A+ +A H+ + + ++ Sbjct: 223 GAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGLPHLAVVSSPEDAAKPLKE 282 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464 L GDVV++K+S RL+ LL Sbjct: 283 WLRAGDVVLLKASRGVALERLLPLL 307 >gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 492 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 82/412 (19%), Positives = 149/412 (36%), Gaps = 25/412 (6%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + ++ I+ +S+ + FFA+ G DGH FI A++KGA VV T Sbjct: 13 VKGDINKNIDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGHFMPS 72 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + GV+D AL+ ++ II ITG+ GKTTT ++ L K Sbjct: 73 EYADVTWIGVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKK 132 Query: 137 YACIGSYNNHIG----VPLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHLV 182 IG+ I V + + + E+ +S Sbjct: 133 TGVIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKRVDYT 192 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + IAV T ++ HL +E+ +AK +F L K + + D + A+ L Sbjct: 193 KFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRLAEQ--L 250 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 K I ++ AD ++ ++ +++ + + K + V H +G N++ + Sbjct: 251 NTKKITYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTHLLGIPNIYNVISAVS 310 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L D A+S H +GR R Q F +D +++ + Sbjct: 311 VAVALNIPFDIIESAISDAHSPDGR--FERVDEGQDFLVFVDYAHSPDALERLLISVRKL 368 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 + G+ + V G G ++ +V L+ + Sbjct: 369 KEEISKNGKIVTVFG----CGGNRDRGKRPQMGKIATELSDYVILTSDNPRW 416 >gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. CCY0110] gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. CCY0110] Length = 490 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 79/458 (17%), Positives = 147/458 (32%), Gaps = 43/458 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLS 82 + V GIS +S + + F + G DG +F A++ GA +++ + Sbjct: 17 ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQAAEKFPPNDD 76 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK----- 135 V VDD++ ++A A + +I +TG+ GKTTT ++ L +K Sbjct: 77 QCVIIVDDLITVAAEIAAAFYGHPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQKPTALI 136 Query: 136 ---TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTHLVRP 184 G I + + ++ + E+ SH + Sbjct: 137 GTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEV-SSHALAQGRVKQCP-F 194 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++V T + HL +E+ SAK +F +N DD + + L Sbjct: 195 KVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPDYLQEKAIINLDDPYGKRLIESF--KPE 252 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + ADF + S+E +G N+L + V Sbjct: 253 QVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAVSAVL 312 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D+ I++L F GR +R + Q ++D ++ + + L Sbjct: 313 HFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLE-----NSLKAAR 367 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 P +G+ I V G G L S ++ + + Sbjct: 368 PFVKGKLICVFG----CGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDIL 423 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +S+ GD V++ K Sbjct: 424 TGISQSVEPLVISDRAEAIKTAILQAKPGDGVLIAGKG 461 >gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Arthrospira platensis NIES-39] Length = 498 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 156/461 (33%), Gaps = 45/461 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79 + G++ +S + P + F + G DG DF A+ GA +V+ + Sbjct: 21 DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80 Query: 80 SLSIP-VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK- 135 S +IP V D+ A ++A A ++ +TG+ GKTTT ++ L+++ K Sbjct: 81 SDTIPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKP 140 Query: 136 -------TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTH 180 G + + FG+ E+ L + R L Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGC 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T + HL +++ AKA +F G +N DD + + L A+ Sbjct: 201 PFQ--VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMARL- 257 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + +AD + S +G + N+L L Sbjct: 258 -GGDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAAL 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G L D+ + L F GR +R + + Q ++D ++ + ++L Sbjct: 317 GAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQNITVIVDYAHTPDSLE-----NLL 371 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416 P GR I V G G+ ++ + ++ + + V S + Sbjct: 372 KASRPFIPGRMICVFG---CGGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRILQ 428 Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P + GD V++ K Sbjct: 429 DVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKG 469 >gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 485 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 74/454 (16%), Positives = 134/454 (29%), Gaps = 47/454 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +V G+ DSR ++ F I+G DGH F AV GA V+ L + Sbjct: 19 DPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVISE-----YPLDLDV 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTI------------A 129 P V D ++A I +TG+ GKTTT + + Sbjct: 74 PNVVVADTKQTAGEVASVFYDHPSHRMRIYGVTGTNGKTTTATLTYDLLRLSGRRAGIVS 133 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHIA 187 + I + N + + VD G+ + L +S + + H A Sbjct: 134 TIGARFHNQTIETANTTPEAVVLHRILAEMVDAGVTDCVLEVSSHALMEGRVAGIHFHAA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL ++E A AKA +FE +E T + + A + I Sbjct: 194 AFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEAIVLNAEDSASHVMAEFAPTRRAI 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 D + +++ + + K V ++ A + Sbjct: 254 MYSTT---VDVEADVQVIWRDETVLVRMKEFKLEVPVRFMGAFNAANLAAAIGLVS---- 306 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 +S R + ID ++ + + Sbjct: 307 TSDMALRTIVSNVPGLTLPKGRLERLATEDAEIYIDYAHTPDGLEKCLSTL------QQD 360 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVLALKDALP 419 + + VL G+ + D+ + S Y+ + + L + Sbjct: 361 DRALVVVLSAA---GDRDPTKRQDMGRIASRYSNEVIVTVHDVRMEDPKQIIRDLVKGIQ 417 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E + + ++G VVV K Sbjct: 418 PDVKYVTFEAREEALRHAATQALEGKRVVVVGKG 451 >gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 494 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPCEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter metallireducens GS-15] gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter metallireducens GS-15] Length = 511 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 79/492 (16%), Positives = 149/492 (30%), Gaps = 59/492 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL + I G + G+ DSR + FFA++G DGHD+I+ + +G Sbjct: 1 MRLEDLARVINPSEAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VVV S + VDD A+++ A A ++ ITG+ GKTTT Sbjct: 61 AVAVVVEDP---SRVPEGMTWLKVDDARLAMSRAAAAFYGNPTDGIPVVGITGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ ++ A +G+ + G + + + + Sbjct: 118 TYLVEAVMARAGIPVAVLGTISYRFGDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLN 226 +S + R + V T + HL +E +KA +F Sbjct: 178 VSSHALEQRRVDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPRRA 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + A+ + + + S+G S + + + + ++ Sbjct: 238 AVINVDDPYGARLASDAVAPVVSYGLSPSVMVRAEMVTFSVDGISGTLVTPLGTIPFHSR 297 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + L D + GR N T++ + Sbjct: 298 LLGRFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGR---LERVDNDHGITVLVDYA 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +VL ++ GR I V G G + ++ + Sbjct: 355 HTGDA----LENVLKTVAEIATGRIITVFG----CGGDRDRGKRPVMGEIAGRFSDLSIV 406 Query: 407 SG-----FHVLALKDALPRSIH--------------------VHYSETMDGLFLFIQSSL 441 + A+ + I E+ Sbjct: 407 TSDNPRTEDAGAIIGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAARVA 466 Query: 442 VDGDVVVV--KS 451 GDV+++ K Sbjct: 467 RPGDVLLLAGKG 478 >gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Weeksella virosa DSM 16922] gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Weeksella virosa DSM 16922] Length = 488 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 166/479 (34%), Gaps = 48/479 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M L T L I +IG V + DSR + F AIKG DGH +I Sbjct: 1 MKQLTTILTNLSII--KTIGDAEGVLVGELIFDSRKAKKGDVFVAIKGTQTDGHSYIEQV 58 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 + G ++V ++ I +I V+D AL +A ++ ITG+ G Sbjct: 59 TEIGVSVIVCE--VLPEIQKENIVYVLVEDASIALGVMASNYYDNPTKNLQLVGITGTNG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGI 164 KTTT +L + + + + I + R VD Sbjct: 117 KTTTTSLLYELFTKLGYASVLVSTIQIVVDGDIIPTQNTTPDIVTLNRIFRQAVDKGCEY 176 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S G ++ + +A T I HL + AK + F+ L + Sbjct: 177 AFMEVSSHGIVQNRIAGLYFRVAAFTNITHDHLDYHITFQNYIQAKKKFFDELPASTKAL 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N DD ++ + A + F +A+F+ + + + + L E Sbjct: 237 VNLDDRNGRVMLQNTVASK----HFFTLKGDAEFKGKILESRFDG----MLLNFNQQEFW 288 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + IG A N+L+ GI +L + + LSV EGR + + ++ Sbjct: 289 TNLIGQFNAYNLLLVYGIAHLLGQEDTEVLTILSVLGSVEGRFQTFHTQGDRVIIVD--- 345 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P +++ + + I E V G+ ++ ++A++ + + + Sbjct: 346 -YAHTPDALENVLDTIGGIRTKNEQLITVV----GCGGDRDKTKRPEMADIAARKSDLAI 400 Query: 405 WLSG----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + S + A+ + + + + D++++ K Sbjct: 401 FTSDNPRTENPEAILADMEAGVEPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKG 459 >gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila RKU-1] gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga petrophila RKU-1] Length = 490 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 89/485 (18%), Positives = 156/485 (32%), Gaps = 57/485 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL+ ++ + G+S S + + F +G +D H+ I ++KGA Sbjct: 9 NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL------------------RSK 107 VVV ++ L P V D K+A + Sbjct: 64 VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 I + S+G+ + + Y I + + + F E+ Sbjct: 119 MMIYHMLTSLGEKGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S ++ VR + + T I+ HL E AK +F+ L+ G LN Sbjct: 179 --SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN- 235 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 E L + +FG SKNAD++L + E + ++ + V Sbjct: 236 -----ESLADTFNRKS--RKITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKA 288 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 IG A N + + L D +L F EGR + R A G ++D +++ Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHS 348 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +L + +GR I V G G S + ++ V L+ Sbjct: 349 PDALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLADVVILT 399 Query: 408 -----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458 G + L + + + GD VV+ Y Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERY 458 Query: 459 RLINL 463 ++I+ Sbjct: 459 QIIDE 463 >gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani ATCC 19707] gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosococcus oceani ATCC 19707] gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] Length = 519 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 80/476 (16%), Positives = 150/476 (31%), Gaps = 48/476 (10%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L + + IG V + ++ +S+DSR +AP FFA +G GH I AV +GA +V Sbjct: 26 LAEWVS---IGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIV 82 Query: 70 ------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 V+ + + +IP+ + D+ + +A LR ++ +TG+ GKT+ Sbjct: 83 YDPVIPVSPAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTS 142 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------ 169 L AL +G+ + L + + + E Sbjct: 143 VSHFLAQALHRQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVL 202 Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH E + +V + A+ T ++ HL + +AK +F E + Sbjct: 203 EVSSHALEQGRVNGVV-FNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQPELRHAVINI 261 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + L + + N L + ++ + + +Q E Sbjct: 262 DDVAGRAFLANLPSEVAAISYG----ITNPQANLWASELHCDRYGIAMTVQSAWGEGQLT 317 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 N L + L +AL R + L+ Y Sbjct: 318 CSLLGRF-NAYNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPLLVVDY 376 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P +++ + L + GR V G G L + V L Sbjct: 377 AHTPDALEQVLCSLQ-MHLGPGGRLWCVFG----CGGDRDRGKRPLMGAAAERLADFVIL 431 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + V+ + + D+V++ K Sbjct: 432 TDDNPRDEDPIQIIIDILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKG 487 >gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae SCF1] gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae SCF1] Length = 495 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 64/478 (13%), Positives = 139/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPNAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ A+ G + +PV + + L+ LA + + + + Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSGRLRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLAGQGATLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + ++ + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFASSWGNGEID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFAAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIITDILAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKG 467 >gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CB0205] Length = 503 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 76/476 (15%), Positives = 133/476 (27%), Gaps = 37/476 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+ + + G V G+S DSR + P F + G DG F A+Q GA Sbjct: 5 LHSLLREVGLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAA 64 Query: 67 LVVVNTDMVASIGSLS-IPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKT---- 120 L V+ + V V D + LA + I + Sbjct: 65 LAVIGRSAAEARPPADGDAVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGKTTT 124 Query: 121 --TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------RMPVDVDFGIFELG 168 + + + I + H + + I + Sbjct: 125 TYLLEHLASACGYPAALFGTLINRWPGHSITAQHTTAFADELQAQLALAAESGARIAAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 +S + R A+ T + HL +E A AK L +N Sbjct: 185 VSSHALDQQRISGCRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARAVVN 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + L + S +AD ++ + S+ + Sbjct: 245 VDDPWGKQLAERLGDR--CWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGAFSSP 302 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L +G++ + ++AL F GR +R + A Sbjct: 303 LLGKFNLMNLLEAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAVL 362 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + S L P EG+ I V G G ++ V + Sbjct: 363 VDYAHTPDGLESALKACRPFVEGQLICVFG----CGGDRDRTKRPQMAAIAARLADQVLV 418 Query: 407 SGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +P V + D+V++ K Sbjct: 419 TSDNPRTEDPEQILKDVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKG 474 >gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli ED1a] gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli ED1a] Length = 495 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNEPLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|317129523|ref|YP_004095805.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474471|gb|ADU31074.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] Length = 368 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 15/365 (4%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGI 164 + + +TGS GK++T + ++ K G+ N +++ + + Sbjct: 6 PRVPAVGVTGSAGKSSTTSFINAIFNTRWKNVLTTKGNMNLPKHTKQAVSQFNRNHKAIV 65 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223 E+ LG + ++P+I VIT + AH I+E A AK+ + + G + Sbjct: 66 LEM---GLGRASNHFNYIQPNIGVITNVGTAHYGKLGNSIKETAKAKSAMIRNIHPRGIL 122 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LN DD+ +LL K+ + G + +++Q K S V L+GK + Sbjct: 123 LLNNDDTNSKLLDYKNFKGDLIR---VGITSKSEYQATNIKYTSYGMIFGVTLRGKKVYF 179 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G H N L + I L ++ L R + LID Sbjct: 180 FIPAFGMHNVINALFAIAIADRLNFSINEMKLGLRSCKSPSRRVNVIK-LSKPKGALLID 238 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +++NANP S+KAA+ VL+++ + IAVLG M E+G+ S+ H ++ L+ I H Sbjct: 239 DTFNANPQSVKAAVDVLAELGNKKKK--IAVLGSMLELGDYSKKGHQEVGAYLAKKGIKH 296 Query: 404 VWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 V+L G + +K A + ++ ++ D L I L +G VV++K S+ R Sbjct: 297 VFLYGKNASYVKTAAIENGIPEKNILHTTNRDKLHYGILRVLNEGCVVLIKGSHKMKMSR 356 Query: 460 LINLL 464 + Sbjct: 357 TAEYI 361 >gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] Length = 501 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 143/430 (33%), Gaps = 38/430 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + ++ G + DSR + +AF A G DG ++ A+++ Sbjct: 8 LNNAAEAVAWLRSRVQGD--------LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQ 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA ++V D + + + + + A +A ++A+TG+ GKTT Sbjct: 60 GAAALLVEADGLQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163 T L ALS + + +GV R D Sbjct: 120 TAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLA 179 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + S +G + + +A+ T HL ++ AKA++F+ + Sbjct: 180 ACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAAV 239 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D L ++S A Q + E V G S+ + Sbjct: 240 VNIDDAHGARLWAR--LQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRM 297 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G + N+L L + L ++ A++A + P GR ++ Sbjct: 298 NTRLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIVKPGQPLVAVD-- 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P +++ A+ L + +G+ V G G + L + + Sbjct: 356 --YAHTPDALEKALRALQPAARQRQGKLWCVFG----CGGDRDNSKRPLMGQAAQAHADG 409 Query: 404 VWLSGFHVLA 413 V+++ + + Sbjct: 410 VFVTSDNPRS 419 >gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 495 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 150/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV ++ + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVVYLNQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTNLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKG 467 >gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9215] gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9215] Length = 514 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 148/480 (30%), Gaps = 40/480 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + + +N IS +S+ + F + G + DG F + A++ GA Sbjct: 6 LHKLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + IGS+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGSAAKERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 +L L + K G ++ ++ + L Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225 +S + A+ T + HL S +E K EK G L Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGISVL 245 Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N+DD + L K +L I + F + K S + ++ Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQ 305 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + I+ L + K + F GR ++ + + +L Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSRSLP 365 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + VL I EG+ I V G G L ++ Sbjct: 366 TVIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEELSD 420 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++++ + + + + + D++++ K Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIAGKG 480 >gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 734 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 73/461 (15%), Positives = 158/461 (34%), Gaps = 32/461 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60 T L + + + + + I P A+FA A Sbjct: 295 TVGKLCEILNAEL-RNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVAA 342 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA +++ + IP V ++ AL++ AV + +A+ S K Sbjct: 343 FEKGASVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKI 396 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 M+ LS+ +T I NN+ + + + + + + G + ++ Sbjct: 397 NPLSMIEQMLSNKMETVHSISVTNNYNSMLHAMFASTPKTEAAVINVSCVNGGNVERVSQ 456 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +A++T+ + E+ K ++ G+ ++G + +N DD + Sbjct: 457 TANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQ 516 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + ++ AD+ + + ++ + + + H L T Sbjct: 517 DIITIGV----DNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATF 572 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + I+ I A+ + P G N+ +I + N S+ A+ L Sbjct: 573 ALGEIMGIPPKQIIPAIEKYRPSTGLTT----VRNERGIYVISDFENEAVESVGTALKEL 628 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 + + RRIAVL ++ + E + + +++ ++ G L Sbjct: 629 CTMPLSPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADL 688 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 +S V T L F++ +L + D V+ K S + Sbjct: 689 KSKFVIKLNTRQALTEFLKLNLRNNDAVLFKGSTVTELDEI 729 >gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MW2] gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus MW2] gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 494 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] Length = 502 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 168/481 (34%), Gaps = 54/481 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ + + ++G+++DSR++ P F A++G + G +F A+ +GA Sbjct: 12 LRGLLEPLGIE----ADERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAA 67 Query: 67 LVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 ++ + + A ++P V + + +A T+I +TG+ Sbjct: 68 AILWQPTPGFDDQALSARCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVTGTD 127 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNN----------------HIGVPLTLARMPVDVD 161 GKT+ + + AL + +G+ I + L ++ Sbjct: 128 GKTSVSQFIAHALGRKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRARHA 187 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + SH + + L + +AV+T ++ HL A AKA +F+ + Sbjct: 188 QAVVIEVSSHALDQQRLAGVG-FDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQR-PELH 245 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 T+ +N DD F L+A + YS + A + + S+ + + G Sbjct: 246 TVVVNVDDDFGRSLRASVRHARV-IGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCRA 304 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G A N+L LG + L + A++ LS+ P GR +RY Sbjct: 305 AVRVGLLGRFNAANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGRPTVVID 364 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + L+ + H GR V G G L L+ + Sbjct: 365 YAHTPAG-------LQAALAAMREHFAGRIWCVFG----CGGDRDRGKRPLMGALARASA 413 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 + ++ + ++ V E + + D ++V K Sbjct: 414 DRIIITNDNPRTENPRRIIAEIQAGAGADSRVRVIEDRREAVIHSIRAAAPEDAILVAGK 473 Query: 451 S 451 Sbjct: 474 G 474 >gi|225629826|ref|ZP_03787749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591321|gb|EEH12438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 352 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 92/355 (25%), Positives = 156/355 (43%), Gaps = 51/355 (14%) Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + I E+GM+ GEI+ L+ + P+IAVIT I PAH NFS + ++A AK EI G++ G Sbjct: 1 YLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNG 60 Query: 222 TIFLNYDDSFFELLKAKSHAL--------------------------------------- 242 T+ L+ D+ +++ L + ++ Sbjct: 61 TLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYL 120 Query: 243 -------GIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + K + + + + S + + G H A Sbjct: 121 DPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFA 180 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 ++L +V L D+ AL F +GRG ++ N+ + LID+SYNA+PASM Sbjct: 181 YSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVKYNKKYIHLIDDSYNASPASM 240 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 K AI LS S + IA+LGDM E+G+ S FH DL ++++ NI V+ G +L Sbjct: 241 KTAIKTLSTYSNQRK---IALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLE 297 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 L + LP +I + + L + + + + D ++VK S ++ + ++ Sbjct: 298 LHELLPDNIRGTHFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 352 >gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] Length = 494 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 72/480 (15%), Positives = 147/480 (30%), Gaps = 43/480 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ T LL Q S V + +DSR + F A+KG DG FI A Sbjct: 1 MSKELTLAALLSPWQNISADKSANIAVQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 ++ GA V+ + G++ IPV + + L+ LA + II +TG+ Sbjct: 61 IELGANAVIAESCEQHLAGTIEYIDTIPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGT 120 Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 GKTT +++ L ++ T + T + + E Sbjct: 121 NGKTTITQLIAQWLELIGKKAAVMGTTGNGFLDDLQPAANTTGNAIEIQQTLHQLEQQSA 180 Query: 170 -------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 S G ++ + + V + ++ HL +EE A AK +F Sbjct: 181 QFTALEVSSHGLVQGRVKALDFAVGVFSNLSRDHLDYHGTMEEYAEAKFSLFSEHNCHNA 240 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D ++ +A+ + + + + + S + G + Sbjct: 241 VINIDDQVGSRWVERLDNAIAVSLKPTAIERAVWAKSVAYSESGISLSIDGMFGAGDCVV 300 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + + TL + I + +L + A + Sbjct: 301 PLIGEFNASNVLLAMTTLLALGIDKQLLLETASSLKPVLGRMELFTAENKAKVVVDYAHT 360 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 ++ L+ + H +G+ A+ G G + + + Sbjct: 361 PDAL----------EKALNALRVHCQGQLWAIFG----CGGDRDTGKRPMMAAIGERLAD 406 Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + + + + F ++ D++++ K Sbjct: 407 RVILTDDNPRSESPAEIVKDMLVGMNQPDTAVVEHSRFDALQFALANSHADDIILLAGKG 466 >gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia frederiksenii ATCC 33641] gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia frederiksenii ATCC 33641] Length = 471 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86 ++DSR A + F A+ G DG +I A+ +G VV D VA S +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + ++ L+KLA + ++ +TG+ GKTTT ++L ++ + + Sbjct: 62 YLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWGQALGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G I+ + AV T Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F + I D+ L A+ + + Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMENNV 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + +G N+L+ L + L Sbjct: 242 PAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLLSLGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + + A P GR + + + +A L+ H +G Sbjct: 302 LAQLLAAAPQLLPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H + DVVV+ K Sbjct: 411 AGHAQAIHGRAEAVTSAIMQAKEDDVVVIAGKG 443 >gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus geothermalis DSM 11300] gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis DSM 11300] Length = 488 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 78/480 (16%), Positives = 149/480 (31%), Gaps = 53/480 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL A+ +P V G++ + + P F AI+G +DGH F+ +G Sbjct: 1 MRLPDLAAALS-TPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V+ + + + +P V + AL A A ++ +TG+ GKTTT Sbjct: 60 AVAVLGE--GLPADVASPLPYLSVPNARAALADAAAALAGHPSRALKVVGVTGTDGKTTT 117 Query: 123 KEMLTIALSSIKKTY---------------ACIGSYNNHIGVPLTLARMP----VDVDFG 163 + L + ++ P + + Sbjct: 118 SWLTRHLLRAAGLRTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEAGGEAA 177 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E SH + + V +AV T ++ HL +E + K ++ E Sbjct: 178 VLEA-SSHALALDRV-RGVDWDVAVWTHLSSEHLDFHGTLENYFADKRKLIER------- 228 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + A+ + + ++++AD+Q R ++ + +V Sbjct: 229 APFAVLNVDDPWTAQLRGVAPQETTYSAENQHADWQARHIEERATGLHFQVASPLGEFAA 288 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG N L + + L A V ++ L+ F GR + + + Sbjct: 289 HLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPRVIVDF 348 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + L+ + GR +LG G L EV + Sbjct: 349 AHTPPS------LEKALTTLRATTGGRLWVLLGSAG--GPRDPGKRAPLGEVATRLADHA 400 Query: 404 VWL--------SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V+ + ++ + E F+ GD V++ K Sbjct: 401 VFTEEDCRDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKG 460 >gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 498 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 145/469 (30%), Gaps = 46/469 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T Sbjct: 13 WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72 Query: 78 IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 G ++ + + ++ LA II ITG+ GKTT +++ + Sbjct: 73 HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177 + A +G+ N L I + +S G I+ Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234 V +IA+ T + HL +E+ SAK +F + I Y + + Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMA 293 L K +Q + S + + IG Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGRFNV 312 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L++L + L + I P +GR + + F + +A Sbjct: 313 TNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA----- 367 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 L+ I H + + G G + ++ V ++ + Sbjct: 368 --LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRN 421 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++++ K Sbjct: 422 EKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 470 >gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Candidatus Regiella insecticola LSR1] gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Candidatus Regiella insecticola LSR1] Length = 514 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 135/476 (28%), Gaps = 55/476 (11%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP ++ + +DSR +A + F A+ G DG +I A+ +GA V+ ++ Sbjct: 21 DVPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQGQSAPSI 80 Query: 81 L-----------------SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 +P+ ++ + L+KLA + ++ +TG+ GKTT Sbjct: 81 PTQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQFYHQPGARLKLVGVTGTNGKTT 140 Query: 122 TKEMLTIALSSIKKTYACI---------------GSYNNHIGVPLTLARMPVDVDFGIFE 166 ++L ++ A + + V Sbjct: 141 LTQLLAQWSQALGNISAVMGTLGNGLLQQSLIATENTTGSAIDVQKTLNHFVMQGANFAA 200 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G ++ + AV T ++ HL + A +N Sbjct: 201 MEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDM-ARYEAAKWQLFSTHHAKEKIIN 259 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + ++ + L + ++ E Sbjct: 260 ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETKNINYHAQGVTLRFDSSWGEGRLV 319 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + + + ++L D ++ + R T+I + Sbjct: 320 SRLLGAFNVSNLLMALATLLALDYPLKKL-VATVSQLQAVCGRMEVFNALDRPTVIVDYA 378 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A L+ H +G+ V G G L ++ H+ + Sbjct: 379 HTPDA----LEKALAAARLHCKGQLWCVFG----CGGDRDKGKRALMGGIAEQWADHLVV 430 Query: 407 S---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + G V + L H + + DVVVV K Sbjct: 431 TDDNPRTEDPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAKEQDVVVVAGKG 486 >gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes 266] Length = 529 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 40 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 99 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A R T+ ITG+ GKTTT ++ L + Sbjct: 100 AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 159 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181 G L AR V + E + +S Sbjct: 160 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 219 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 220 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 278 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W+ + +V + G +N M L Sbjct: 279 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 337 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 338 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 397 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 398 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 447 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 448 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 492 >gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 498 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 145/469 (30%), Gaps = 46/469 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T Sbjct: 13 WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDK 72 Query: 78 IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 G ++ + + ++ LA II ITG+ GKTT +++ + Sbjct: 73 HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177 + A +G+ N L I + +S G I+ Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234 V +IA+ T + HL +E+ SAK +F + I Y + + Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMA 293 L K +Q + S + + IG Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGRFNV 312 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L++L + L + I P +GR + + F + +A Sbjct: 313 TNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA----- 367 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 L+ I H + + G G + ++ V ++ + Sbjct: 368 --LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRN 421 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++++ K Sbjct: 422 EKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 470 >gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA1] gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA2] gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA1] gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL086PA1] gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA1] gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA2] gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA1] gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL092PA1] Length = 499 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 10 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A R T+ ITG+ GKTTT ++ L + Sbjct: 70 AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181 G L AR V + E + +S Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRVDG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W+ + +V + G +N M L Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA2] Length = 499 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 10 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A R T+ ITG+ GKTTT ++ L + Sbjct: 70 AGVPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181 G L AR V + E + +S Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W+ + +V + G +N M L Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia billingiae Eb661] gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia billingiae Eb661] Length = 471 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 69/451 (15%), Positives = 130/451 (28%), Gaps = 43/451 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88 DSR A + F AIKG DG FI A+ +G V+ + + A G + +PV + Sbjct: 4 DSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIYL 63 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L+ LA + + I + T +A G Sbjct: 64 AQLSQRLSALAGRFYQQPGDKLRLIGVTGTNGKTTTTQLLAQWGQLLGETGAVMGTVGNG 123 Query: 149 VPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVITTI 192 + L + + +S G ++ + A T + Sbjct: 124 LYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAAAFTNL 183 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 + HL + +AK +F + I D+ L+ A+ + + Sbjct: 184 SRDHLDYHGDMARYEAAKWLLFSEHQVGQIIVNADDEVGRRWLQKLPDAVAVTMEDNIDP 243 Query: 253 SKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + Q + + + E+ +G N+L+ LG + L +D Sbjct: 244 GCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLLALGYPLD 303 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 + I + P GR + + + +A L H G+ Sbjct: 304 SLIATGNQLQPVTGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALEAARLHCTGKL 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI 422 V G G L ++ V ++ + + L + Sbjct: 357 WCVFG----CGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGLLDAG 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +GD+V+V K Sbjct: 413 RARVMPGRAQAVTNTVMQAQEGDIVLVAGKG 443 >gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL074PA1] gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA2] gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA1] gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA2] gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA1] gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA2] gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA1] gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA2] gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL007PA1] gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL056PA1] gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA3] gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA2] gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA1] gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA1] gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL045PA1] gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA2] gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA1] gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA2] gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA3] gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL078PA1] gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA2] gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA3] gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA1] gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL038PA1] gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA2] gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL097PA1] gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA3] gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA2] gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA2] gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA1] gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL020PA1] gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL099PA1] Length = 499 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 10 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A R T+ ITG+ GKTTT ++ L + Sbjct: 70 AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181 G L AR V + E + +S Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W+ + +V + G +N M L Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli ABU 83972] Length = 490 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 68/468 (14%), Positives = 143/468 (30%), Gaps = 43/468 (9%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 + P + +++DSR A + F A+ G DG +I A+ +G ++ Sbjct: 6 APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE 65 Query: 76 ASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129 A+ G + +PV + + L+ LA ++ +TG+ GKTTT ++L Sbjct: 66 ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 125 Query: 130 LSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEI 175 + + + N +G + E + +S G + Sbjct: 126 SQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLV 185 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + ++ +V T ++ HL +E +AK ++ I D+ L Sbjct: 186 QHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWL 245 Query: 236 KAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A+ + + + + + + + E+ +G Sbjct: 246 AKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVS 305 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L+ L + L + +K + P GR + + + +A Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA------ 359 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 L H G+ V G G L ++ ++ + Sbjct: 360 -LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 414 Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + E + DVV+V K Sbjct: 415 EPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462 >gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] Length = 530 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 56/499 (11%), Positives = 133/499 (26%), Gaps = 88/499 (17%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ + FFAIKG + DG+DFI + + LV+ + + V Sbjct: 14 VKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVALVITDNK---KNTIIDDKVI 70 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL---------------- 130 V+DV AL + + +IA+TG+ GK++ + Sbjct: 71 YVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 130 Query: 131 ---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + +++ + + + S G + ++ + A Sbjct: 131 IFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAF-EASSHGLNQARLGEIKVNTA 189 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------------- 234 T+ + HL E AK ++F + Sbjct: 190 CFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHSTTAYILVREDAST 249 Query: 235 -------------------------------LKAKSHALGIKTIYSFGKSKNADFQLRKW 263 + ++ + Sbjct: 250 GSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNIKFITVGKKGDVQI 309 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + + + L + K + + Sbjct: 310 TKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIGFDFNKIIEILTQV 369 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + R N F + +A ++ +V + R V G G Sbjct: 370 KPVKGRMERIGNTNIFVDYSHTPDALEKALTELKNV-----KLRDSRLNVVFG----CGG 420 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLF 434 L ++ +V ++ + + + ++ + + + Sbjct: 421 NRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEIA-NREEAI 479 Query: 435 LFIQSSLVDGDVVVV--KS 451 + ++L D++++ K Sbjct: 480 KYGINNLKQDDILLIAGKG 498 >gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 2457T] Length = 490 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 70/468 (14%), Positives = 145/468 (30%), Gaps = 43/468 (9%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 + P + +++DSR A + F A+ G DG +I A+ +G ++ Sbjct: 6 APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE 65 Query: 76 ASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129 A+ G + +PV + + L+ LA ++ +TG+ GKTTT ++L Sbjct: 66 ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 125 Query: 130 LSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEI 175 + + + N +G + E + +S G + Sbjct: 126 SQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLV 185 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + ++ +V T ++ HL +E +AK ++ I D+ L Sbjct: 186 QHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWL 245 Query: 236 KAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A+ + + + + + + + + E+ H +G Sbjct: 246 AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 305 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L+ L + L + +K + P GR + + + +A Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA------ 359 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 L H G+ V G G L ++ ++ + Sbjct: 360 -LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 414 Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + H E + DVV+V K Sbjct: 415 EPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462 >gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus aureus subsp. aureus ST398] Length = 494 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKEQP---LPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] Length = 505 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 65/469 (13%), Positives = 145/469 (30%), Gaps = 47/469 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + + ++ I++DSR + F A+ G DG FI A++ GA ++ D +A Sbjct: 22 KLPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIA 81 Query: 77 SIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIAL 130 + G +++ + + D+ L+ +A + A+TG+ GKTT ++L Sbjct: 82 NEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQW- 140 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGE 174 + Y G+ + L I + +S G Sbjct: 141 -ANLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGL 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 ++ + ++ T ++ HL ++ A AK +F + I D Sbjct: 200 VQGRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEHQSGIAIINADDAVGASW 259 Query: 235 LKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L +A+ + + + ++ +E + +G A Sbjct: 260 LIDIPNAVAVAIDPQAVVNHTGLKLWATDVQFSTQGVTIEFDSSWGQGKFTAPLVGSFNA 319 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L+ L + + ++ GR + ++ + +A Sbjct: 320 TNLLLALATLLATNHPMADLLEKAPKLQAVIGRMEVFQDTDKAMMVVDYAHTPDA----- 374 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 L + H +G+ + G G S + ++ + L+ + Sbjct: 375 --LEKALQALRVHCDGKLWCIFG----CGGDRDSGKRPMMAEVAERLADQIILTDDNPRS 428 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + D+++V K Sbjct: 429 EDPKDIVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKG 477 >gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. ATCC 51142] gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. ATCC 51142] Length = 511 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 151/481 (31%), Gaps = 46/481 (9%) Query: 4 LWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + HDLL + S + V GIS +S S P + F + G DG +F A Sbjct: 15 MMKLHDLLNNVPSISSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFWQSA 74 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVF-GVDD--VLGALNKLAVAARLRSKATIIAITGSV 117 ++ GA +++ VDD + A A + +I +TG+ Sbjct: 75 MEVGATAAMISPQAAEKFPPTDDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMIGVTGTN 134 Query: 118 GKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPV--------DVD 161 GKTTT ++ LS +K G + + + + Sbjct: 135 GKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEAVSANNE 194 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + E+ SH + ++V T + HL +E+ +AK +F Sbjct: 195 YCVMEV-SSHALAQGRVKQCP-FKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPDYLQE 252 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + + L + ADF R + ++ Sbjct: 253 KAIINLDDPYGKRLIE--SLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTPLGTV 310 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +G N+L + V L D+ T I+ L F GR +R + Q + Sbjct: 311 NFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDITVI 370 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + + L P +G+ I V G G L S Sbjct: 371 VDYAHTPDSLE-----NSLKAARPFIQGQLICVFG----CGGDRDRTKRPLMGQASAELA 421 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + + +P ++ GD V++ K Sbjct: 422 DVSVVTSDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGK 481 Query: 451 S 451 Sbjct: 482 G 482 >gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] Length = 495 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 152/481 (31%), Gaps = 45/481 (9%) Query: 1 MNPLW--TFHDL---LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M P+ T +L L +P + G+ +DSR++ P E F A++G +DG Sbjct: 1 MTPVTVNTCRELPALLMGTGADLAAGLPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRA 60 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 ++ A GA +V ++ +P + + L ++A + A+ Sbjct: 61 YLSQAAAAGAVAALVEDELPGEEPP--LPCVVIPGLRHKLCEIAGRYYRDPSRQMHVAAV 118 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173 TG+ GKTT ++ L S IG+ + + + + E+ S G Sbjct: 119 TGTNGKTTVSQLFAQLLRSAGYDCGVIGTLGASLTAGVQDSVHTTPDSIAMQEILASWAG 178 Query: 174 EIRFLTHLV--------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + + A+ T + HL +E +AKA +F Sbjct: 179 QAVPFVSMEVSSHALDQGRVNGLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLFAFESL 238 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 I D F + A +LG+ + +AD +L + S M ++ Sbjct: 239 RTAILN--SDDPFSDVLAGRMSLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLESPWG 296 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + + +G A N+L L D + A P GR + A Sbjct: 297 NGTLNCPLLGKFNAVNLLAALTAALQAGVPFDAVMTAAESLQPVPGRMEPIHSAAGPLVV 356 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + +A VL + +GR IAV G G L Sbjct: 357 VDYAHTPDA-------LRHVLIALREQCKGRLIAVFG----CGGDRDKGKRPLMAEAVAA 405 Query: 400 NISHVWLSGFHVLA------LKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + + + D + H S D V++ K Sbjct: 406 IADRAVITSDNPRSEDPLAIIADIEAAMAGEYHVCADRGDAIAMAIESAAPEDCVLIAGK 465 Query: 451 S 451 Sbjct: 466 G 466 >gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes LO28] Length = 178 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 7/146 (4%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L+QAI + + ++ I+ DSR + P F I G DGH F AV+ G Sbjct: 1 MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + +SIPV V D A+ LA ++ ITG+ GKTT Sbjct: 61 AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG 148 ++ + + IG+ IG Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIG 141 >gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA2] gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL044PA1] gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA3] Length = 499 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 84/459 (18%), Positives = 143/459 (31%), Gaps = 46/459 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + GI++DSR + P + + ++G H G F A + GA V+ + +PV Sbjct: 16 ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDEHGAKLAVEAGVPVV 75 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 VDD A+ A T+ ITG+ GKTTT ++ L + Sbjct: 76 IVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFLVEAGLRTAGHHVGTIGTIG 135 Query: 144 NNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHLVRPHIA 187 G L AR V + E + +S + Sbjct: 136 FRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALALQRVDGTCFDVV 195 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + HL +++ AKA +F + +N DD L + A G+ Sbjct: 196 AFTNLGRDHLDFHKTLDDYFEAKARLFT-PDLARVGVINVDDPRGRQLIERMQANGV-RA 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + +D+Q+ W + + +V + G +N M L ++ Sbjct: 254 VTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLPGEFNVRNAAMALAMLETAG 313 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D L R L T + + + P ++ +A+ ++ Sbjct: 314 LAFDDVADGLCSAQVPGR---MERVDLGADAPTALVD-FAHTPQAIASALDAARSLADS- 368 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------------L 414 GR IAVLG G + ++ V ++ + Sbjct: 369 -GRLIAVLGA----GGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPAVIRAAVLEGA 423 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 DA I V GDV+ V K Sbjct: 424 HDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter koseri ATCC BAA-895] gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895] Length = 495 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEHMRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + +T N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVEQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYSTHHYGEAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + K + + E+ Sbjct: 241 ADDEVGRRWLVRLPDAVAVSMEDHINPNCHGRWLKAVEVKYHDSGATIRFDSSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVFSAPGKTTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCTGQLWCVFG----CGGDRDKGKRPLMGAIAEEFADVV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKG 467 >gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 272 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 32/225 (14%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I + F + G DG H F+ AV Sbjct: 17 LKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVEDAV 74 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 75 KNGAVALIVERDI-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 129 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT ++ LS +G+ +G + D+ Sbjct: 130 TTTSYLIEKILSDYGYHMGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYC 189 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + E+ L R + IAV T + HL +E Sbjct: 190 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKH 232 >gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 494 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 66/474 (13%), Positives = 142/474 (29%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L + I+ + + I+ DSR+ F A KG D H F V +G Sbjct: 1 MKANELFEKIKSKQVLGSLDREITDITTDSRTAEEGSVFVATKGYTVDSHKFCQDVVNQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 L+VV ++ + V + + + T +TG+ GKT+ Sbjct: 61 CKLIVVESEQEVE---GDVTQVIVPKTRRVASLIVHKLYNYPSEQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---- 169 M+ + P T+ + Sbjct: 118 ATMIHQIHRKLGKGSAYLGTNGFQINETVTKGENTTPETVTLTKKIHEAVEAGAESMTLE 177 Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G V +A+ + + HL +E AK+ +F L + Sbjct: 178 VSSHGLALGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLRKEKFAV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ ++++G + A F+ + ++ + + + V + Sbjct: 238 VNADDDFSEYLTSVTPYEVFTYGIHRPAQFKAERIQESLTGASFDFVTPDGTFHVDSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V + + +S P L +L + Sbjct: 298 GKFNISNIMAAMTAVWGTGTPMQEIVDVVSQLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ + S +V + Sbjct: 351 YAHTTDGIEKLIDAVKPFVKQKLIFLIG-MA--GERDLTKTPEMGKQASRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y E GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVL-ASKG 458 >gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] Length = 493 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 140/445 (31%), Gaps = 35/445 (7%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDV 91 DSR + P + F A +G + DG ++I A+ GA +V ++ D A I GV + Sbjct: 30 DSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSGDGFAWRPEWQIANLGVPHL 89 Query: 92 LGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY---------ACI 140 LA + +TG+ GKT+ + L A + Sbjct: 90 KQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGNGFWG 149 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGM-----SHLGEIRFLTHLVRPHIAVITTIAPA 195 P + + F S G + A+ T + Sbjct: 150 RLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTNLTRD 209 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL + ++KA++F I D+ EL +Y +G ++ Sbjct: 210 HLDYHGSMAAYGASKAKLFYWQSLQHAIINTDDEFGRELAAGLRADRPNLNVYGYGFNEQ 269 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 AD ++ ++ + + S E+ +G AQN+ +G++ + ++ Sbjct: 270 ADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYSLPDVLR 329 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 L+ P GR A Y P +++ A++ L +I P G V Sbjct: 330 VLAQIRPATGRMDCISRAGRPLVVVD----YAHTPDALEKALATLREIKPQGASLWC-VF 384 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPR-SIHVHYSE 428 G G L ++ V ++ + + D LP Sbjct: 385 G----CGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEA 440 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 D+V++ K Sbjct: 441 DRRVAIQTAIRRAAPQDIVLIAGKG 465 >gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] Length = 494 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 72/475 (15%), Positives = 146/475 (30%), Gaps = 42/475 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ + V I+ DSR+ F A KG D H F + +G Sbjct: 1 MNASTLFEKIRVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 ++VV + V + L + LA + T +TG+ GKT+ Sbjct: 61 CQIIVV---KSKQEVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + Sbjct: 118 ATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ I+++G +A F+ + + E+ + V + Sbjct: 238 LNNDDAFSEYLASVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V +T ++A+ P EGR + L + + Sbjct: 298 GKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLIIDYAHTADG 357 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ + P + + I ++G M GE + ++ V +V + Sbjct: 358 -------MNKLIDAVKPFVKRKLIFLVG-MA--GERDLTKTPEMGTVACRA--DYVIFTP 405 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + L +V E GD VV+ +S Sbjct: 406 DNPANDDPKMLTSELAKGATHDNYVE-FEDRAEGIRHAIEVAEPGDTVVL-ASKG 458 >gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] Length = 512 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI +A+ +GA +V+ D G Sbjct: 42 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 101 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA I +TG+ GKTT +++ L ++ Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484 >gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 498 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 72/497 (14%), Positives = 160/497 (32%), Gaps = 60/497 (12%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I +P+ +N + +DSR + P++ F A+KG DGH+FI A+ K V+ Sbjct: 13 WIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAVLSEVSERKQ 72 Query: 78 IGSLSIPVFGVDDVL----GALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 G ++ L++L+ + +I ITG+ GKTT +++ Sbjct: 73 HGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTVTQLINQWSE 132 Query: 132 ---------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 K + + I + L + V E+ S G ++ Sbjct: 133 LLGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSVTIEV--SSHGLVQ 190 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFE 233 + + A+ T + HL +++ AK +F I Y ++ + Sbjct: 191 NRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTDHTVNKIILNANDKYAQNWLK 250 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 K + K K E++ ++ + + + IG Sbjct: 251 KFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSWGHGILSTYLIGTFNI 310 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 +N+L+ L + + + +K P GR + + + + Y P ++ Sbjct: 311 KNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPICIID---YAHTPDAL 367 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 + +++ + + + + + G G L ++ + V ++ + Sbjct: 368 EKSLNAIKI--QYCKKKIWCIFG----CGGERDKKKRPLMGEIAEKIANKVVITNDNPRH 421 Query: 414 ---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS----------- 451 + + ++ D++ + K Sbjct: 422 EDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKGHENYQIIGDQY 481 Query: 452 -SNSCGFYRLINLLLEE 467 S+S ++ LLE+ Sbjct: 482 TSHSDQ--EIVLNLLEK 496 >gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 498 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 146/469 (31%), Gaps = 46/469 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I +P+ +++ + +DSR++ P + F A+ G DG FI+ A+ K A ++ T Sbjct: 13 WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72 Query: 78 IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 G ++ + + ++ LA II ITG+ GKTT +++ + Sbjct: 73 HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177 + A +G+ N L I + +S G I+ Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234 V +IA+ T + HL +E+ SAK +F + I Y + + Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMA 293 L K +Q + S + + IG+ Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGHFNV 312 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L++L + L + I P +GR + + F + +A Sbjct: 313 TNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA----- 367 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 L+ I H + + G G + ++ V ++ + Sbjct: 368 --LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRN 421 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++++ K Sbjct: 422 EKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 470 >gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] Length = 476 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 76/470 (16%), Positives = 158/470 (33%), Gaps = 44/470 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + L + + + +V + +S +S+ I + F A+ G DGH++I A++ G Sbjct: 1 MSIQKLFKNVDYRVLTLVEEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 A +++ D I V V ++ L ++ ++K IIA+TG+ GKTTT Sbjct: 61 AKMIIAERDDYPY--PKDITVVLVKNLRDNLGYISSNFYNFPQNKLKIIAVTGTNGKTTT 118 Query: 123 KEMLTIALSSIKKTYACIGS-----YNNHIGVPL--TLARMPVDVDFGIFE---LGMSHL 172 +L + + Y P L ++ + E + +S Sbjct: 119 TYILESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEVSSH 178 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 + ++ A+ T + HL +E+ AKA I L+ + +N DD + Sbjct: 179 ALCQGRVKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPNARLIINKDDKYC 238 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L SF + A + + + + K +G + Sbjct: 239 NRLLN--------VSDSFSLKEVATINGEVLEYTLKGMKVRISKDDKKYIFTTKLMGEYN 290 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 QN+L + L D+D I ++ + GR ++ ++ Y Sbjct: 291 LQNLLGAILSAYNLGIDLDEIINSIQNINSIAGRF----EIIDNDKDVMVVVDYAHTADG 346 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 ++ + LS + + L + G + ++L+ + Sbjct: 347 LENILKTLSIMKKNR-------LVTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNPR 399 Query: 413 ---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + SI + +L D++++ K Sbjct: 400 TEDPEMILNDVEKGMNSSIPYFKICDREMAIKNSIQTLQKNDILLIAGKG 449 >gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho melanesiensis BI429] gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho melanesiensis BI429] Length = 491 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 75/477 (15%), Positives = 153/477 (32%), Gaps = 50/477 (10%) Query: 5 WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 ++L+A+ + + IS +S+ I F KG ++D H + + Sbjct: 1 MKIKEILKALNSVILKVNCDENMEFDYISSNSKDIKENTLFICRKGFNFDSHKIVDDVAR 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120 GA + P V D A + +A + +I +TG+ GKT Sbjct: 61 NGAE------IFIVEEEIEDYPYILVVDSRIAESIIADVFFQKPYEKLITFGVTGTNGKT 114 Query: 121 TTKEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166 T+ + + +G H + + ++ + E Sbjct: 115 TSVHLFHHIMHQFGIKGSISGTVLNDIMGDKFYHHNTTPSAIEITKNMFKTVIEDGKYYA 174 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S ++ +R I IT I HL E AK I L+ G +N Sbjct: 175 MEVSSHALSQYRVESIRYDIVGITNITRDHLDFHQTFENYKRAKLHILNLLKPNGIAIVN 234 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 ++ + +FG N+D+ + + + +++ +VV Sbjct: 235 HELIH-------DIPKKNIRVVTFGTDNNSDYVIHEIISNWSGIFFKLKTPFGEKKVVSQ 287 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G A N+ + + + + D+D I A+S F +GR + A G +ID ++ Sbjct: 288 LLGDFNAFNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGIEIVIDFAH 347 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + + I +GR I V G G S + ++ + Sbjct: 348 TPDALE-----KAILSIRKLTKGRIITVFGA----GGQSDVGKRPMMGEIASKYSDICII 398 Query: 407 S-----GFHVLALKDALPRSIHVHYSE----TMDGLFLFIQSSLVDGDVVVVKSSNS 454 + G + + + + + GD++++ Sbjct: 399 TTDDPRGEDPVKIIKDIEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAG-RG 454 >gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] Length = 505 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 65/469 (13%), Positives = 149/469 (31%), Gaps = 47/469 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + + ++ I++DSR + F A+ G DG +I A++ GA ++ D +A Sbjct: 22 KLPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIA 81 Query: 77 SIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIAL 130 + G +++ + + D+ L+ +A + A+TG+ GKTT ++L Sbjct: 82 NEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQWA 141 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGE 174 + +G+ N G+ L I + +S G Sbjct: 142 NLAGYKAGVMGTTGN--GLLTDLKPAANTTGSAIEIQQTLSQLVEQGADFTAMEVSSHGL 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 ++ + ++ T ++ HL ++ A+AK +F + I D Sbjct: 200 VQGRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTEHQSRMAIINADDAVGASW 259 Query: 235 LKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 LK +A+ + + + ++ +E + +G A Sbjct: 260 LKDIPNAVAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEFDSSWGLGKFTAPLVGSFNA 319 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L+ L + + ++ GR + ++ + +A Sbjct: 320 TNLLLALATLLATNHSMADLLEKAPQLQAVIGRMEVFQDTDKAMMVVDYAHTPDA----- 374 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 L + H +G+ + G G + + ++ + L+ + Sbjct: 375 --LEKALQALRVHCDGKLWCIFG----CGGDRDNGKRPMMAEIAERLSDCIILTDDNPRS 428 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + D+++V K Sbjct: 429 EDPNGIVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKG 477 >gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894] Length = 471 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G +V A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA +I +TG+ GKTTT +++ + + + Sbjct: 62 YLSQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + + +S G ++ ++ V T Sbjct: 122 NGLLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK +F + D+ L A+ + + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLFSAHHYGQAVINADDEVGRRWLAKLPDAVAVSMENNI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ LG + L Sbjct: 242 NPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +++ P GR + + + +A L H G Sbjct: 302 LAALLESAPRLQPVNGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADILTGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E + DVV++ K Sbjct: 411 AGRARVVEGRAEAVTNAIMQAAENDVVLLAGKG 443 >gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium 2_1_46FAA] Length = 494 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 76/477 (15%), Positives = 163/477 (34%), Gaps = 49/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ I+ + + + ++ DSR + F IKG DG ++ AV+KG Sbjct: 1 MKLTNLLRPIKYSILQGESEPDIEKVTHDSREVERDTLFVCIKGSATDGALYVGEAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A ++ + + + V++V L K+A T+I ITG+ GKTTT Sbjct: 61 AVAILADRRIEV---PREVTFILVENVRETLAKIASVFYGEPSKEMTVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L IG+ IG + D + E Sbjct: 118 AYMIYHILEQSGYKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEMVLQKCDIAVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G T ++ I V T + H+ F + + + I Sbjct: 178 V--SSQGLKLHRTDEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLFSQSDFGIANM 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + E+ + + + G SK AD+ + + ++ + + Sbjct: 236 DSPYWREMFLRANCDV-----ETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKDRGDI 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + N+ +L +++ + + +G+ + + N+G LID ++ Sbjct: 291 VLSMAGRFNIYNSLCAIAVCRRLGVSFENIRQSLCKTQVKGRVEQISTNKGTIILIDYAH 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA S+++ + ++ PH ++ G ++ ++ +V + Sbjct: 351 NA--MSLQSILEMVHSYRPHR------IICIFGCGGNRAKERRYEMGKVSGALADFTIIT 402 Query: 407 SG--------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 S + +++ + + +Y E + + D++V+ K Sbjct: 403 SDNPRYENPLQIMSEIREGVEDG-NGNYLEICNREEAIRYGIKYAGAADIIVIAGKG 458 >gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens harbinense YUAN-3] gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens harbinense YUAN-3] Length = 484 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 145/476 (30%), Gaps = 54/476 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ + G +P+ + GI+ DSR P F I G DGHDF A G Sbjct: 1 MKLQNLLRDVSYTG-GALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFAASAAAAG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 + V+ D A +P V D A R + ++ +TG+ GKTTT Sbjct: 60 SPAVLALRDTGAP-----VPHILVKDTRLAYALCCANFFGRPAERLRMVGVTGTNGKTTT 114 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFGIFE 166 +L L IG+ N G P ++ +F + E Sbjct: 115 TTLLKEILEYNGHKSGLIGTIVNMAGGKTLPSHLTTPEPYEFQQLLKTIADEGCEFAVME 174 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + SH + AV T + HL +E AK ++F + + Sbjct: 175 V-SSHALAQERVAGCH-FEAAVFTNLTQDHLDFHKTMENYLEAKEKLFSMCDLGIVNVDD 232 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 KT+ + NAD+ R K ++ E+ V Sbjct: 233 DYAP------EIIRTAKCKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNALIGRVSVP 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L L ++AL +GR FT+I + Sbjct: 287 IPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGR---IEVVPTGRNFTVIIDYA 343 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + A +L I +GR +A+ G G + +++ + Sbjct: 344 HTPDA----LEKILKSIRGFAKGRVVALFG----CGGDRDKTKRPIMGMVAGRGADFCIV 395 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + D+V++ K Sbjct: 396 TSDNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIVLLAGKG 451 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 80/438 (18%), Positives = 145/438 (33%), Gaps = 36/438 (8%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 V+GI+ DSR + F A G H DG D+I A+ KGA V+ ++ + Sbjct: 384 APVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDSQGFDWKPEWQVH 443 Query: 85 VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-- 140 + D+ + +A + + +TG+ GKTT L A +++ A I Sbjct: 444 NIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAVIGT 503 Query: 141 ---------GSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + N P+ L +M D + + +S G + + V +AV Sbjct: 504 LGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVAFDVAV 563 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T I HL +E A + +N DD F L G + Sbjct: 564 LTNITRDHLDYHLTMEAY-QAAKRKLFDWQTLSAAVVNADDPFGLALIEDLRKQGK-KVL 621 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 S+G AD + ++V+ + ++ H +G N L L + + Sbjct: 622 SYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCLLVNEV 681 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + A++A+S P GR + ++D ++ + L + Sbjct: 682 ALPAALQAVSGLVPVAGRMQM--FGGGDLPLVVVDYAHTPDALE-----KALHTLRSQAR 734 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI- 422 G+ V G G S ++ V ++ + A+ A+ + Sbjct: 735 GKLACVFG----CGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGMA 790 Query: 423 -HVHYSETMDGLFLFIQS 439 S Sbjct: 791 REATVETDRAKAIALAVS 808 >gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 132] gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 493 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F + +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus N315] gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH9] gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH1] gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus N315] gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JH9] gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus 04-02981] gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 494 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F + +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] Length = 499 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 73/456 (16%), Positives = 145/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI +A+ +GA +V+ D G Sbjct: 29 LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 88 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 89 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 208 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 269 VAKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 326 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 327 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 379 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 436 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471 >gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa] gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa] Length = 777 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 88/499 (17%), Positives = 170/499 (34%), Gaps = 65/499 (13%) Query: 5 WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + +LL + + +G + + + GI DSR ++ + F G DGH ++ A Sbjct: 244 MSLAELLDESKVVPVSVLGDL-EVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEAD 302 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGK 119 ++GA VV + ++ + V+D L LA A +I ITG+ GK Sbjct: 303 KRGAVAVVASKEVDIEETLGCKALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGK 362 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163 TTT ++ ++ + + +I V +A+M + Sbjct: 363 TTTANLVKGMYEAMGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEA 422 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + + + G V IAV T + HL EE +AKA++F + Sbjct: 423 VV-MEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERH 481 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + + +F ++KNAD K++ ++ + V +E Sbjct: 482 RKVVNVDDPNAPFFIAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILE 541 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G H N+L + + + A ++ ++ + GR + Q F ++ Sbjct: 542 ISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELID--EEQAFGVIV 599 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + S +L + R I V+G G + ++ Sbjct: 600 DYAHTPDALS-----RLLDSVRELRPKRIITVIG----CGGERDRGKRPIMTKIATDKSD 650 Query: 403 HVWLS-----GFHVLALKDA-----------------------LPRSIHVHYSETMDGLF 434 L+ G L + D LP + + Sbjct: 651 MTILTSDNPRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAV 710 Query: 435 LFIQSSLVDGDVVVV--KS 451 + +GD+VVV K Sbjct: 711 RCAVAMGEEGDMVVVAGKG 729 >gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA1] Length = 499 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 84/465 (18%), Positives = 140/465 (30%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 10 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A R T+ ITG+ GKTTT ++ L + Sbjct: 70 AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFELGM-------SHLGEIRFLTHL 181 G L AR V + E G S Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W+ + +V + G +N M L Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus COL] Length = 492 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 74/468 (15%), Positives = 150/468 (32%), Gaps = 40/468 (8%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+ ++ + + ++ I+ DSR+ F A G D H F + +G LVVV Sbjct: 6 LKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVV 65 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTI 128 N + ++ V D L + LA ++ +TG+ GKT+ M+ + Sbjct: 66 NKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHL 122 Query: 129 ALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGE 174 ++K + + + + + L +S G Sbjct: 123 IQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGL 182 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + V +A+ + + HL +E AK+ +F L + + + + Sbjct: 183 VLGRLRSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDS 242 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + ++S+G + A F + ++ + + + V +G Sbjct: 243 FSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNIS 302 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N++ + V ++T IKA+ P EGR L+ + Y M Sbjct: 303 NIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAHTADGMN 358 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413 I + + L M GE + ++ V +V + + Sbjct: 359 KLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTPDNPAND 410 Query: 414 -----LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + H +Y + GD VV+ +S Sbjct: 411 DPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 457 >gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA1] gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA1] gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA4] gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA1] gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA3] gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL067PA1] gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA1] gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA2] gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA1] gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA3] gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA2] gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA1] gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA2] Length = 499 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 84/465 (18%), Positives = 140/465 (30%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 10 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A R T+ ITG+ GKTTT ++ L + Sbjct: 70 AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFELGM-------SHLGEIRFLTHL 181 G L AR V + E G S Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W+ + +V + G +N M L Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Nitrospira defluvii] gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Nitrospira defluvii] Length = 502 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 148/486 (30%), Gaps = 54/486 (11%) Query: 5 WTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T +L+ + G + + ++ DSR + P F A++G DGH F Sbjct: 1 MTLDELIGPLHGRLGVLERNGDQRVTIADLTDDSRKVGPGSLFVAVQGERVDGHQF---- 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118 + + + S +IP V D AL L S ++ +TG+ G Sbjct: 57 LDRVVAAGAAAVVVQRSGDVGAIPCVRVQDSRAALGILGSRFYGDPSSSLRMVGVTGTNG 116 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGI 164 KTTT ++ L + ++ IG+ +G L + Sbjct: 117 KTTTTYVVKTMLEAARRQVGLIGTVAYLVGKESIPASHTTPGALELQKLFARMREARLDT 176 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222 + +S T +AV T + HL +E A K G Sbjct: 177 VVMEVSSHALALDRTAGSEFDVAVFTNLTQDHLDFHLDMERYFQAKLKLFAELGRAGAVK 236 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + A+ + ++++G + AD + + ++ + Sbjct: 237 PRKRAIINADDPWGARIRSACTVPVWTYGLHQQADIYADGVRLSPAGTSFTLRSPAGTCP 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G H N+L +G+V +D A+ GR + + Sbjct: 297 IKSRLVGEHNVSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELVEAGQDFSVVVDY 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A + +L+ GR I V G G ++ Sbjct: 357 AHTEDA-------LVRLLTAAQALRTGRIITVFG----CGGDRDRTKRPKMGRAAVKYSD 405 Query: 403 HVWLSGFHVLA-------------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVV 447 V L+ + +K+AL HV Y GD+V Sbjct: 406 VVILTSDNPRTEDPAAILREVEVGVKEALAERGHVRYRMVADRREAIEAAIREAKPGDMV 465 Query: 448 VV--KS 451 ++ K Sbjct: 466 LIAGKG 471 >gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] Length = 494 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 72/474 (15%), Positives = 153/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + S ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F ++ + + + +V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P L +L + Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPV-------EGRLEVLDPSLPIDLIID 350 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++ + P + + I ++G M GE + ++ V +V + Sbjct: 351 YAHTADGMNELIDAVQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella halifaxensis HAW-EB4] gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis HAW-EB4] Length = 488 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 150/473 (31%), Gaps = 45/473 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L++ + + +++DSR++ F AI G DG FI A ++GA V+ Sbjct: 2 LIRDLLAPWFHYSGAEEFSELTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVL 61 Query: 70 VNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 V+TD G L I F ++ + AL A + + II +TG+ GKT+ Sbjct: 62 VHTDSPEEHGKLVHEAGLQILFFQLNRQISALAAQAYP-LSQVRPQIIGVTGTNGKTSVT 120 Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGM 169 +++ K+T N G + D I + + Sbjct: 121 QLIAQLQLLQGKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEV 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G ++ V +AV T ++ HL ++ +AK +F+ + D Sbjct: 181 SSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMDAYGAAKKRLFQFATLRAGLINCDDA 240 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 E L A +S A + + ++ +G Sbjct: 241 LGREWLTD--LASDKVIGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWPTGEAKLNSPLLG 298 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L LG + +L D+ + P GR +R+ + +A Sbjct: 299 DFNLSNLLAALGALYLLGEDMHALVALAEKLEPVAGRMERFTTKDEVTLVVDYAHTPDA- 357 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 L + H +G+ V G G + + V ++ Sbjct: 358 ------IEQALKALRVHCKGKLWCVFG----CGGDRDRGKRPMMAASAEQFADRVMVTSD 407 Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + + + V GD+V++ K Sbjct: 408 NSRSEDPNAIIADILAGLQHPKNALTQVDRQTAIKDVVAQAVAGDMVLLAGKG 460 >gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 494 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F + +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED133] gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 494 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 495 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 70/475 (14%), Positives = 150/475 (31%), Gaps = 40/475 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + L + I+ + + + I+ DSR+ F A KG D H F V + Sbjct: 1 MLDANVLFEKIRVKQVIGTLEKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQ 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTT 121 G +++V+ + + V D L + LA +I +TG+ GKT+ Sbjct: 61 GCQVIIVSHQ---QEITGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTS 117 Query: 122 TKEMLTIALSSI--------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------L 167 M+ + + + + ++ + + L Sbjct: 118 IATMIHHIYRKLGKGSAYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTL 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 EVSSHGLSLGRLRGVDFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFV 237 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + ++ ++++G + +A F + + + +V Sbjct: 238 VLNKDDAFSEYLASVTPFEVFTYGVTNDAQFTAHHINESLQGVQFTFKTPEGEFQVKSPY 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G N++ + V ++ + A+ P EGR L+ + Y Sbjct: 298 VGLFNVSNIMAAMIAVWSKGIALNDIVDAVENLEPVEGRL----EVLDPSLPIDLIIDYA 353 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 M I + + + L M GE + ++ V +V + Sbjct: 354 HTADGMDKLIDAVKPFAKQK----LIFLCGMA--GERDLTKTPEMGRVACRA--DYVIFT 405 Query: 408 GFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + ++ + H +Y E + GD VV+ +S Sbjct: 406 PDNPANDAPKTLTQELAKGATHDNYIEFEDRAEGIRHAINIAEPGDTVVL-ASKG 459 >gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15] Length = 485 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 76/458 (16%), Positives = 148/458 (32%), Gaps = 45/458 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++G+ DSR +A +AF A+ G ++ A+ GA ++++ Sbjct: 12 DVTIHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQQAGECTEHHG 71 Query: 84 PVFG-VDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + V + + ++A +I +TG+ GKT+ + + L C Sbjct: 72 ALIVPVAGLRSLVGRIADRFFEHPSQRLRLIGVTGTNGKTSVCQYVAQLLKE--TGTPCG 129 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRP 184 G+P L + + +S + + Sbjct: 130 ILGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLSM 189 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 AV T + HL +E +AKA++F+ E ++ DD F L + Sbjct: 190 TGAVFTNLTRDHLDYHGSMEAYGAAKAQLFQREELHFSVINF-DDPFGRQLFEQLDGKCD 248 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + YS + + LR+++ E EV + V +G A N+L + V Sbjct: 249 RVRYSLHE-AQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATVL 307 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L ++ +A+ P GR R G ++D ++ + + + L+ + Sbjct: 308 TLGVPIERVQQAVGRLTPPPGR--LERFVGANGVRVVVDYAHTPDALA-----NALTALR 360 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415 PH G + V G G + + V ++ + + Sbjct: 361 PHVTGELVCVFG----CGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETIAEHIL 416 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V S DVV++ K Sbjct: 417 AGFTDAARVSVIHDRAEAIRSTIRSATPNDVVLIAGKG 454 >gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus RF122] gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus RF122] Length = 494 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 148/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O11] gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O46] Length = 494 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLTTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 479 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 79/469 (16%), Positives = 147/469 (31%), Gaps = 47/469 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 LL+ +Q + G+ DSR I F A++G DGH FI A++KGA L Sbjct: 2 EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 61 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125 ++V+ ++ I + ++ L LA + I+ +TG+ GKTTT + Sbjct: 62 IIVSKEVP---CQKGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYL 118 Query: 126 LTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLG 173 L L K Y + + E + +S Sbjct: 119 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHA 178 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 +++ A+ T + HL +E+ AK ++F L LN DD + + Sbjct: 179 LELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGK 238 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L+ + H + T ++ E V+L + Sbjct: 239 RLQEEFHGISYGTKQ---------AGVQGKILGFEGGKERVELSLFGKKKECKIQILGGF 289 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + I + + V + G+ Q + +ID ++ + Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDALE- 348 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 ++L I + I + G G + ++ V L+ + Sbjct: 349 ----NILQAIQEIKTKKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRT 400 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + H+ E GD+V++ K Sbjct: 401 ENPESILEEVKGGFTKENHICVLE-RAEAIAEGIRRAEKGDIVLIAGKG 448 >gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] Length = 495 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 78/471 (16%), Positives = 150/471 (31%), Gaps = 42/471 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ I+ + + G+ +DSR + P + + + G + DGHDF A+ +GA Sbjct: 10 LSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAA 69 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 ++V I L IP V V + LA A ++ +TG+ GKTT Sbjct: 70 ALLVER-----ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEVVGVTGTNGKTTITY 124 Query: 125 MLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV-------DFGIFE------LGMS 170 ++ + K IG+ I G L R + + E + +S Sbjct: 125 LVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVS 184 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + + HL +EE AKA++F GL + + Sbjct: 185 SHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNG 244 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + D++ ++ V+ +G++ +V + G Sbjct: 245 DDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGM 304 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L +AL+ GR + R + + Sbjct: 305 FSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDG-- 362 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +V +GR I V G G ++ HV ++ + Sbjct: 363 -----LENVCRTAQEFTQGRLITVFG----CGGDRDKGKRPQMGAIAEELSDHVIVTSDN 413 Query: 411 VL------ALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451 ++D L + Y+ ++ +GD V++ K Sbjct: 414 PRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKG 464 >gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii 5216-82] Length = 495 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEID 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFS----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] Length = 501 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 94/484 (19%), Positives = 157/484 (32%), Gaps = 55/484 (11%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +L + + V ++ ++ DSR+ P AF AI G DG F+ A+ GA L Sbjct: 6 AELEKILGASVPESVDG--IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASL 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 VV D+ P V D A A A T+ ITG+ GKTT+ + Sbjct: 64 VVAERDVE------GAPTVVVPDARVALAALATATAGHPSHDVTVYGITGTNGKTTSSYV 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGV--------------PLTLARMPVDVDFGIFE--LGM 169 L LS+ I V P + D G+ L Sbjct: 118 LHGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARMRDAGVEHVVLET 177 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G R A+ T + HL +E+ K +FE + D Sbjct: 178 SSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFE-WTDGPKLTNVDDA 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--------- 280 ++ LG FG S+NAD+++ K + + + Sbjct: 237 YGARIVAEVPGTLG------FGVSENADYRITKVHPSDGGTAFTLTTPERFLDGRDAPGV 290 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 +E+ +G + N+ I + +DT + A++ GR +R A +GF Sbjct: 291 IELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPAATAKGFEV 350 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIA----VLGDMCEMGELSQSFHIDLAEVL 396 ++D ++ + ++ H +G + V+ G + + E Sbjct: 351 VVDYAHTEVGLELVLDVARAVVGRDHADGGVRSEGGRVICVYGAAGRRDPAKRPKMGEAA 410 Query: 397 SLYNISHVW----LSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 S ++ A+ D A + + GD+VVV Sbjct: 411 SRLADVNIITNDDTYDEDPQAIADEVMAGADPSNTTIVLDRRDAIRQALTQARPGDIVVV 470 Query: 450 --KS 451 K Sbjct: 471 AGKG 474 >gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL001PA1] gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA2] gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA3] gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA4] gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL060PA1] gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA2] gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL103PA1] Length = 499 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 82/465 (17%), Positives = 139/465 (29%), Gaps = 46/465 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + GI++DSR + P + + + G H G F AV+ GA V+ + D Sbjct: 10 NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAE 69 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137 +P+ VDD A+ A T+ ITG+ GKTTT ++ L + Sbjct: 70 AGVPIIVVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVG 129 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181 G L AR V + E + +S Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 189 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T + HL + ++ +AKA +F + +N DD L + A Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + +D+Q+ W + +V + G +N M L Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWHAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++ D L + + A +++ AA S + Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 GR IAVLG G ++ V ++ + Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +A + V GDV+ V K Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462 >gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] Length = 509 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 87/492 (17%), Positives = 162/492 (32%), Gaps = 59/492 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL + + ++ +NG+ DSR + FFA+KG DGHDFI A ++G Sbjct: 1 MRLEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ + A G V D A++++A + ++ ITG+ GKTTT Sbjct: 61 AVAVVLEDETRAPCGME---WIRVGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ +S A +G+ + G + + + E + Sbjct: 118 TYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIFLN 226 +S + R +AV T + HL +E A+ Sbjct: 178 VSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRA 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + A+ + + S+G + +A + + + + H Sbjct: 238 AAINRDDSYGARLVETAVAPVISYGLAADAAVRAENVVFSVDGIAGTLVTPFGTAPFHSH 297 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + L +D + + GR N+ T++ + Sbjct: 298 LLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGR---LERVHNERGVTVLVDYA 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--------- 397 + A +VL +S GR I V G G + +S Sbjct: 355 HTGDA----LENVLKTVSELATGRIITVFG----CGGDRDRGKRPVMAEISGRYSHLTIV 406 Query: 398 ---------LYNISHVWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSL 441 I L+G + L++ R ++ + E + + Sbjct: 407 TSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVA 466 Query: 442 VDGDVVVV--KS 451 V GD+V++ K Sbjct: 467 VAGDIVLLAGKG 478 >gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 494 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + S ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F ++ + + + +V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51] gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 496 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 78/471 (16%), Positives = 148/471 (31%), Gaps = 42/471 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ I+ + + G+ +DSR + P + + + G + DGHDF A+ +GA Sbjct: 11 LSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAA 70 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124 ++V I L IP V V + LA A ++ +TG+ GKTT Sbjct: 71 ALLVER-----ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEVVGVTGTNGKTTITY 125 Query: 125 MLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV-------DFGIFE------LGMS 170 ++ + K IG+ I G L R + + E + +S Sbjct: 126 LVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVS 185 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + + + HL +EE AKA++F GL + + Sbjct: 186 SHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNG 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + D++ ++ V+ +G +V + G Sbjct: 246 DDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGGESQVEYSTPGM 305 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L +AL+ GR + R + + Sbjct: 306 FSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDG-- 363 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 +V +GR I V G G ++ HV ++ + Sbjct: 364 -----LENVCRTAQEFTQGRLITVFG----CGGDRDKGKRPQMGAIAEELSDHVIVTSDN 414 Query: 411 VL------ALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451 ++D L + Y+ ++ +GD V++ K Sbjct: 415 PRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKG 465 >gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 495 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEARDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + A Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFSAAGKATVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + V E D DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467 >gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 489 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 79/469 (16%), Positives = 147/469 (31%), Gaps = 47/469 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 LL+ +Q + G+ DSR I F A++G DGH FI A++KGA L Sbjct: 12 EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 71 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125 ++V+ ++ I + ++ L LA + I+ +TG+ GKTTT + Sbjct: 72 IIVSKEVP---CQKGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYL 128 Query: 126 LTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLG 173 L L K Y + + E + +S Sbjct: 129 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHA 188 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 +++ A+ T + HL +E+ AK ++F L LN DD + + Sbjct: 189 LELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGK 248 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L+ + H + T ++ E V+L + Sbjct: 249 RLQEEFHGISYGTKQ---------AGVQGKILGFEGGKERVELSLFGKKKECKIQILGGF 299 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + I + + V + G+ Q + +ID ++ + Sbjct: 300 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDALE- 358 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 ++L I + I + G G + ++ V L+ + Sbjct: 359 ----NILQAIQEIKTKKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRT 410 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + H+ E GD+V++ K Sbjct: 411 ENPESILEEVKGGFTKENHICVLE-RAEAIAEGIRRAEKGDIVLIAGKG 458 >gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9515] gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9515] Length = 511 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 79/480 (16%), Positives = 147/480 (30%), Gaps = 40/480 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL + + +N IS +S+ + F + G + DG + + A++ GA Sbjct: 6 LHKLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65 Query: 67 LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + IGS+ V D++ ++ R K +I +TG+ GKTT Sbjct: 66 AAIIGSAAKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 +L L + K G ++ ++ + L Sbjct: 126 TFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225 +S + A+ T + HL S +E K EK G L Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGISVL 245 Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N DD + L K +L I K+ F + K S + ++ Sbjct: 246 NIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPREKIK 305 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + +G N + + I+ L + K + F GR ++ + L Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNDDVSSLLP 365 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + VL I EG+ I V G G L ++ Sbjct: 366 TLIVDYAHTP-DGLKKVLKSIKKLCEGKLITVFG----CGGDRDCSKRPLMGSIAAEFSD 420 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 H++++ + + + + + D+V++ K Sbjct: 421 HLFITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIAGKG 480 >gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulolyticum H10] gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulolyticum H10] Length = 486 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 145/479 (30%), Gaps = 55/479 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +L+ + +I V+ I+ DSR F I+G DGH +I A++ G Sbjct: 1 MKLRELVMNLNIKAINGNLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIENG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--------------- 109 +V +V I +DD L ++ A + Sbjct: 61 TKAFLVQKHVVV---PEGITTIEIDDTRFGLAAVSDAFFGHPSSKFNLIGITGTKGKTTT 117 Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + AI + G+ L + Y + ++ L + VD + E Sbjct: 118 TYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDMVEKKVDSTVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S G I V T + H+ + +EE +AKA++F+ K Sbjct: 178 V--SSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMCRKAVINI 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + L ++++G S AD + + ++ + S+++ Sbjct: 236 DSEHGRKMAELAK-------CKVFTYGLSDKADIWASDIVKKTGHTYFTLNSPWGSIDIE 288 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N L +G ++ ++ GR + + N Sbjct: 289 TDLQGEFNIYNALAAIGSCCLIPGITLEHVRLGLTKVTVPGRMESVKTGGNYSVLIDYAH 348 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + ++ VL + GR +++ G G +S Sbjct: 349 TPDS-------LEQVLKTVKEFAHGRVVSLFG----CGGDRDKGKRPAMGEISGNIADFT 397 Query: 405 WLSGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + ++ + + F + VDGD++++ K Sbjct: 398 IITSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKG 456 >gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus DSM 44985] gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus DSM 44985] Length = 506 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 76/502 (15%), Positives = 152/502 (30%), Gaps = 52/502 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + +G V G++ ++S+ P + F A+ G G +FI A ++GA Sbjct: 15 ISELADVAGAVVLAGDERGRVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAA 74 Query: 67 LVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123 V+ + A +G V +L L T++ +TG+ GKTTT Sbjct: 75 AVLTDEAGAACLGGTDAMAVLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKTTTT 134 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF--ELGM 169 +L + + IG+ IG P T + + V + G+ + + Sbjct: 135 YLLESLFRAAGRATGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVLMEV 194 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S R T ++ HL + +E AKA++F+ Sbjct: 195 SSHALDFGRVDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAVICV 254 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + ++ + AD+ + + ++ + + + + Sbjct: 255 D--DSWGQRMSRVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLGL 312 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 L + V + + + G+ R Q F ++D ++ Sbjct: 313 LGRHNAANAVLAVGLAEATGVRVTEELVRGWADIAVPGRLERVQAGQDFLAVVDYAHKPE 372 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + VL + H GR V+G G + +S V ++ Sbjct: 373 SLA-----KVLQALREHTAGRIAVVVGA----GGDRDQGKRPMMGEVSASGAELVVVTDD 423 Query: 410 HVLA---------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS----- 451 + + + S + GD V+V K Sbjct: 424 NPRSEDPAAIRAQVLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQ 483 Query: 452 ------SNSCGFYRLINLLLEE 467 S+ L + E Sbjct: 484 EVNGVKSHFDDREILARAIRER 505 >gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] Length = 498 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 158/461 (34%), Gaps = 45/461 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79 + G++ +S + P + F + G DG DF A+ GA +V+ + Sbjct: 21 DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80 Query: 80 SLSIP-VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK- 135 S +IP V D+ A ++A A ++ +TG+ GKTTT ++ LS++ + Sbjct: 81 SDTIPCVIPAADMTTACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLSNLDQP 140 Query: 136 -------TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTH 180 G + + FG+ E+ L + R L Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGC 200 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 R +AV T + HL +++ AKA +F G +N DD + + L A+ Sbjct: 201 PFR--VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMARLG 258 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + +AD + S +G + N+L L Sbjct: 259 SDRFWSYSVS--DPSADIWADSLVYQPTGIKGVLHTPMGSASFSLPLVGQYNLSNLLAAL 316 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G L D+ + +L F GR +R + + Q ++D ++ + ++L Sbjct: 317 GAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQDITVIVDYAHTPDSLE-----NLL 371 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVL 412 P GR I V G G+ ++ + ++ + + V S + Sbjct: 372 KASRPFIPGRMICVFG---CGGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRILQ 428 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +P + GD V++ K Sbjct: 429 DILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKG 469 >gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] Length = 810 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 155/479 (32%), Gaps = 49/479 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + ++G + DSR I P + F A +G + DG +I A++ G Sbjct: 3 SQIAAPKNAQL--PELKCHISGSQTLHADSRKIQPNDIFIACQGEYADGRLYIQSAIENG 60 Query: 65 AGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 A V D + P+ D+ LA A S I +TG+ G Sbjct: 61 ASFVFWEDDGTFQWQPEWAVSNQPI---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------- 164 KT+ + + A+ ++ +C G L + Sbjct: 118 KTSITQWIAQAIDILENKKSCAIIGTVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGA 177 Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ + V A+ T + HL + + E + KA +F Sbjct: 178 NHIAMEVSSHGLHQYRVNGVPFKTAIFTNLTRDHLDYHNSMAEYGATKARLFHWQGLENA 237 Query: 223 IFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 I + D+ +L+ K IYS+G ++NAD ++ ++ ++ + +Q + Sbjct: 238 IINSDDEFGSKLILQLKQQYADNLNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNG 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +G AQN +G + + A+ ALS P GR Sbjct: 298 TTQTRLLGRFNAQNFAAAIGALCASGFEFQAALNALSQIRPATGRMDCIINENKPLVVVD 357 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A ++ E + V G G S L ++ + Sbjct: 358 YAHTPDALEKALTTLRE-----IQSPESKLWCVFG----CGGNRDSGKRPLMGAVAAQHS 408 Query: 402 SHVWLSGFHVL------ALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + D LP + + + D+V++ K Sbjct: 409 DRPIVTSDNPRMEDPQAIIADILPAVPNAALVQVDRQTAIEQTIAQAAPQDIVLIAGKG 467 >gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 506 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 63/461 (13%), Positives = 135/461 (29%), Gaps = 44/461 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 + V ++IDSR I + F A+ G DG FI A+ GA V+ D +A+ G + Sbjct: 29 EHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSIANHGDIVE 88 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 I + + L+ +A + ++A+TG+ GKTT ++L + Y Sbjct: 89 QDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW--ANLIGY 146 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHL 181 G+ +L I + +S G ++ Sbjct: 147 NAGVMGTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLVQGRVKA 206 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 ++ ++ T ++ HL + A AK +F + + DD L +A Sbjct: 207 LQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVINADDDIGLSWLADLPNA 266 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + T + L + + + L Sbjct: 267 VAVVTDKARLGEGYQGQALWLTDVAYSTQGVNISFDSSWGAGQFTAPLVGSFNVSNLLLA 326 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++L + G+ + ++D ++ + L Sbjct: 327 LATLLALGHSIDKLIAAAPRLTAVIGRMEVFQRSDKPMVVVDYAHTPDALE-----KALQ 381 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + H +G+ + G G + +S + ++ + Sbjct: 382 ALRVHCQGKLWCIFG----CGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAPAGIVS 437 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + D++++ K Sbjct: 438 DMLQGLTLPQQAQVIHDRKLACTYAIEHARANDIILLAGKG 478 >gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] Length = 506 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + Q V GI+ DSR++ P + + A+ G G DF+ AV GA Sbjct: 17 LAELADQLGAEPPQKAAQ--VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +PV V+D + +LA I ITG+ GKTTT Sbjct: 75 AVLTDPTGAERAAATGLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 ++ L ++ T + R + + +S Sbjct: 135 LVEGGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSS 194 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + I V T ++P H+ SG+E+ AKA++F + D+ Sbjct: 195 HALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGVVNLDDEYG 254 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L+K + +F + D R + G E + Sbjct: 255 RRLVKEA-----TVPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERISARSPLP 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ TL + L A A G R + + + + Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH---- 365 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 A SVL + EG+ VLG G+ + + + + V S Sbjct: 366 KTDAVESVLKALRKVTEGKVHIVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSDNPR 422 Query: 409 -FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 LA+ + + V E + GD V+V K Sbjct: 423 SEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKG 477 >gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium 6_1_63FAA] Length = 497 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 43/475 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL+ ++ + + I+ DSR FF IKG DGH + +K Sbjct: 8 MKKLVDLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEVAEK 67 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +++V + + V V++ A+ ++ A K I ITG+ GKTT Sbjct: 68 GAAVLIVQDKVEVPEE---VTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKGKTT 124 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167 T ++ L + IG+ IG + V+ + Sbjct: 125 TTYLVKSILENAGYKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDSVVM 184 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + T + I + T I P H+ + ++ A ++ N Sbjct: 185 EVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP-NEHKDFADYLRCKALLFKQCKVGIFNA 243 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + +FG S+ AD + K + + + + K + Sbjct: 244 DAEHLDEILE----GHTCEVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNFPVE 299 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 I A ++ +L +++ T + +G+ ++ F +ID ++N Sbjct: 300 IDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKVKGRIEMVKVSDEFTLMIDYAHN 359 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A + S+L+ + + R + + G G S+ ++ EV + S Sbjct: 360 A-----MSLESLLTTLKEYKPNRLVCLFG---CGGNRSKLRRYEMGEVSGKLADLTIITS 411 Query: 408 G-------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ Y E + GD+VV+ K Sbjct: 412 DNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKG 466 >gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 501 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 83/477 (17%), Positives = 156/477 (32%), Gaps = 51/477 (10%) Query: 7 FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 D+L+ + +G + IS+ S+ I F A KG DGH+FI +A+Q GA Sbjct: 5 LKDILKKVDVLKIVGKNTSKLIERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGA 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 +V + S I V D + AL ++ K +I ITG+ GKT+ Sbjct: 65 HTIVCEK--IPSSIHKKITYVLVPDSMNALGIISSNFYDHPTKKIKLIGITGTNGKTSVA 122 Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVP-----LTLARMPVDVDFGIFELGM 169 +L S + + I + P + + + + Sbjct: 123 TILHQLFSKMGEKNILISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEV 182 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + + V T I HL + S K FE L K +N DD Sbjct: 183 SSHGIHQKRIAGLLFQGGVFTNITHDHLDYHESFDHYLSTKKFFFENLSKKAFALINSDD 242 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + Y +G KNA+F+++ K+ S + + +++ Sbjct: 243 ENSYKIIKDI----LSKTYFYGLKKNANFKIQILKESIHGSQLLIDGHKIFTKLIGTFNV 298 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 Y++ + + + K RG+ + N G ++D ++N + Sbjct: 299 YNLLAGYATAILLGKKKDNILKKIKN------IKPIRGRFEQFISNSGIRVIVDYAHNPD 352 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +K ++ L +I + +G+ I V+G G L + + Sbjct: 353 --GLKTVLNTLKKIK-NDDGKLICVIG----CGGNRDIKKRSLMGKIVYETCDVSIFTSD 405 Query: 410 ------------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + K ++ + D++++ K Sbjct: 406 NPREEDREKILVDMKNFKSSIYKDKESILTFVNRKKAIETAIQIAKKKDIILIAGKG 462 >gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens KN400] Length = 509 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 87/492 (17%), Positives = 162/492 (32%), Gaps = 59/492 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL + + ++ +NG+ DSR + FFA+KG DGHDFI A ++G Sbjct: 1 MRLEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ + A G V D A++++A + ++ ITG+ GKTTT Sbjct: 61 AVAVVLEDETRAPCGME---WIRVGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168 ++ +S A +G+ + G + + + E + Sbjct: 118 TYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIFLN 226 +S + R +AV T + HL +E A+ Sbjct: 178 VSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRA 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + A+ + + S+G + +A + + + + H Sbjct: 238 AAINRDDSYGARLVETAVAPVISYGLAADAAVRAENVVFSVDGIAGTLVTPFGTALFHSH 297 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + L +D + + GR N+ T++ + Sbjct: 298 LLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGR---LERVHNERGVTVLVDYA 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--------- 397 + A +VL +S GR I V G G + +S Sbjct: 355 HTGDA----LENVLKTVSELATGRIITVFG----CGGDRDRGKRPVMAEISGRYSHLTIV 406 Query: 398 ---------LYNISHVWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSL 441 I L+G + L++ R ++ + E + + Sbjct: 407 TSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVA 466 Query: 442 VDGDVVVV--KS 451 V GD+V++ K Sbjct: 467 VAGDIVLLAGKG 478 >gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] Length = 501 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 134/452 (29%), Gaps = 34/452 (7%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GI+ DSR + P F A G DG +I A+++GA V+ G L +P F V Sbjct: 21 GITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELPVPGFAV 80 Query: 89 DDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYA-------- 138 + LA R A + +TG+ GKTT + L AL + Sbjct: 81 PRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTVTQWLARALGELGSRCGIVGTLGSG 140 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITTI 192 + + + + + E + +S +G + + V +AV T + Sbjct: 141 FPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFDVAVFTNL 200 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL----NYDDSFFELLKAKSHALGIKTIY 248 HL ++ A AKA +F + + L+ A + T Sbjct: 201 TRDHLDYHRTMDAYAEAKARLFALPGISRAVINLDDAFGLTQARRLVAAGQVDVIGYTCV 260 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + ++ + + + N+ L ++ L Sbjct: 261 ASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNLLAVIGALVM 320 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 +AL+V R + G ++ + Y P ++ + + Sbjct: 321 RGVAVEEALAVVGRLNPPEGRMQLVGGIGEPLIVID-YAHTPDALAKVLEAVRGTVRSRG 379 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------LKDALPRS 421 GR + V G G L ++ V ++ + + A Sbjct: 380 GRLVCVFG----CGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAIAAGAG 435 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 DVVV+ K Sbjct: 436 ASADCIVDRAEAIRIAVGEAGPDDVVVLAGKG 467 >gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis YPIII] gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia pseudotuberculosis YPIII] Length = 495 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP+ + +++DSR A + F A+ G DG +I A+ +G +V D VA S Sbjct: 16 DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75 Query: 81 L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV + ++ L+ LA + ++ +TG+ GKTTT ++L ++ Sbjct: 76 VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180 + + N +G + + +S G I+ Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAMEVSSHGLIQDRVA 195 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + V T ++ HL + +AK +F + I DD L Sbjct: 196 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 255 Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A+ + + K N + K + + E+ +G N+L+ Sbjct: 256 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 315 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + + + A P GR + + + +A Sbjct: 316 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 368 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L+ H G+ V G G L ++ V ++ + Sbjct: 369 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 424 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V + DVV++ K Sbjct: 425 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467 >gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a] Length = 734 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 76/461 (16%), Positives = 159/461 (34%), Gaps = 32/461 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60 T L + + + + + I P A+FA A Sbjct: 295 TVGKLCEILNAEL-RNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVAA 342 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA +++ + IP V ++ AL++ AV + +A+ S K Sbjct: 343 FEKGASVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKI 396 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 M+ LSS +T I NN+ + + + + + + G + ++ Sbjct: 397 NPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTEAAVINVSCVNGGNVERVSQ 456 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +A++T+ + E+ K ++ G+ ++G + +N DD + Sbjct: 457 TANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQ 516 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + ++ AD+ + + ++ + + + H L T Sbjct: 517 DIITIGV----DNRMADYYADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATF 572 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + I+ I A+ + P G N+ +I + N S+ AA+ L Sbjct: 573 ALGEIMGIPPKQIIPAIEKYRPSTGLTT----VRNERGIYVISDFENEAVESVGAALKEL 628 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 + + RRIAVL ++ + E + + +++ ++ G L Sbjct: 629 CTMQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADL 688 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 +S V T L F++ +L D D V+ K S + Sbjct: 689 KSKFVIKLNTRQALTEFLKLNLRDNDAVLFKGSTVTELDEI 729 >gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18] gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18] Length = 505 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 75/494 (15%), Positives = 148/494 (29%), Gaps = 64/494 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + + + + DSR + P FFA++G DG +F+ AV+ G Sbjct: 1 MKLRQLLACLTAPKVTGDDAAEITSLCYDSRQVRPGALFFALRGVKSDGTEFVESAVKGG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV + + + V D A++ +A ++ ITG+ GKTTT Sbjct: 61 AVAVVADRPCAVA----GVTCIEVPDPRRAMSLMAALFYGVPTAGIPLVGITGTNGKTTT 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLAR-----------MPVDVDFGIFE 166 ++ + A +G+ + G P T + + E Sbjct: 117 TYLMEGIMEQAGIPTAVLGTISYRFGATSIPAPNTTPESVDLQQILRDLVDQGAKGAVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224 + S + +A+ T + HL +E +K +F Sbjct: 177 V--SSHSLEQRRADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLAPTGEKPL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + A+ A + ++ + AD + + + + +++ Sbjct: 235 RRAVVNLDDPYGARIAAEAAAPVLTYAAAGPADLTVAEVEFSVHGIRCRLNSPVGEIDID 294 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L +G L D ++ GR N ++ + Sbjct: 295 SDLLGRFNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGR---LERVPNDQGIIVLVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A +VLS I+ R I + G G + ++ Sbjct: 352 YAHTGDA----LENVLSTIAELKTDRIITIFG----CGGDRDKGKRPVMGEIAARYSDLA 403 Query: 405 WLSG-----FHVLALKDALPRSIH--------------------VHYSETMDGLFLFIQS 439 ++ A+ D + I E+ Sbjct: 404 IVTSDNPRTEEPKAILDDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRAAIM 463 Query: 440 SLVDGDVVVV--KS 451 + GD+V++ K Sbjct: 464 AARPGDIVLLAGKG 477 >gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis SP1PR4] gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis SP1PR4] Length = 506 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 70/484 (14%), Positives = 150/484 (30%), Gaps = 50/484 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 F ++++ + ++ + P V G+ DSR F A++G DG+ ++ A++ G Sbjct: 1 MRFEEIVRGVTTLAVRLAP-VDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLG 59 Query: 65 AGLVVVNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120 A V+ ++ V I V V+ AL +++ + + A+TG+ GKT Sbjct: 60 AVAVLTDSPTVFEDLTSRSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKT 119 Query: 121 TTKEMLTIALSS----------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 TT ++ L S + + + + + + + Sbjct: 120 TTAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAV 179 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI--EEIASAKAEIFEGLEKTGT 222 E+ SH + + +AV T + HL + A A G Sbjct: 180 MEM-SSHALVQERV-WGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRI 237 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR---KWKQCSEQSWMEVQLQGK 279 +N DD ++ + + T + + + K + + + Sbjct: 238 AVINADDPSAGMMVEAASGCEVWTYRVGAREFDENAYEFVADDVKLGAGWTEFALVTPMG 297 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V G N++ + +D ++ + P GR + N Sbjct: 298 ERVVRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGR---FETVGNDLGI 354 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T++ + + + A+ L ++ G + M G + Sbjct: 355 TVVVDYAHTDD-----ALRNLIGLARELVGEGRVI--TMFGCGGDRDRTKRPKMGRAAGD 407 Query: 400 NISHVWLS-----GFHVLALKD----ALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449 V ++ A+ L + + E + GD+V++ Sbjct: 408 GSDLVIVTSDNPRSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLL 467 Query: 450 --KS 451 K Sbjct: 468 AGKG 471 >gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum DSM 15641] gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum DSM 15641] Length = 494 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 153/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L + I +G V+GI+ S ++ +AFF I G + DGH F A+ G Sbjct: 3 MTCRELFEGIDCTFLGNA-DEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHG 61 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V + + + + V D A+ A ++ ITG+ GKTTT Sbjct: 62 ARVIVAQRKVYLA-DATDVVEIIVSDTRRAMAAAAANFYGHPSTDFHLVGITGTNGKTTT 120 Query: 123 KEMLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELG 168 ++ + + P L D + Sbjct: 121 TYLVEHIAEVAGRTTGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVAME 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S T + + + HL E AKA +F + D Sbjct: 181 VSSHALDLERTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARRVICIDD 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 ELL + A I S G A K + + + + ++G+ + + + Sbjct: 241 KWGQELL--RRCAAAGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLV 298 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+++ LGI L ++ ++ALS GR +R + G +D ++ Sbjct: 299 GRFNVSNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAHTP 358 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + +S ++ +GR I V G G + L +L V S Sbjct: 359 DA-----LRKAISAVANLTDGRVIVVFG----CGGDRDATKRPLMGQAALSGDFAVVTSD 409 Query: 409 ----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + S + GD ++V K Sbjct: 410 NPRSEDPDAIISDILEGMESASERFEVHPDRREAIARAIALANTGDAILVAGKG 463 >gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 537 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 95/483 (19%), Positives = 157/483 (32%), Gaps = 53/483 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + V GI+ DSR++ P + + A+ G G DF A GA Sbjct: 17 LAELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAV 76 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 V+ + + +PV VD+ G + LA A + I ITG+ GKTTT Sbjct: 77 AVLTDPAGAERAAATGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTTAY 136 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------------VDVDFGI 164 ++ L + K + + + R+ DV + Sbjct: 137 LIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHSVV 196 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E+ SH + + V +AV ++P H+ SG+E+ AKA++F ++ Sbjct: 197 MEV-SSHALVLGRVDGCV-FDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFT-KARSRAGV 253 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +NYDD + L + + +F + D R G + E V Sbjct: 254 INYDDEYGRRLIEQ----SEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESV 309 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N+ L V L A G R + + + Sbjct: 310 RAAAPLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDVGQPYLAVVD 369 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISH 403 + A SVL + +G+ AVLG G + ++ Y+ + Sbjct: 370 YAH----KTDAVESVLRALRKVTDGKLHAVLG----CGGDRDRLKRGPMGAAVARYSDTA 421 Query: 404 VWLSG----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V S LA+ A+ V E + GD V+V Sbjct: 422 VLTSDNPRSEDPLAILAAMLAGAAEVPAHERGDVLVEEDRANAIAAAVARAEPGDTVIVA 481 Query: 450 -KS 451 K Sbjct: 482 GKG 484 >gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter sp. 638] gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638] Length = 495 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 142/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + VP + + +DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVQNVPARALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDDATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT +++ + + N +G Sbjct: 121 TTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLAGQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVSALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYSTHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALDYPLSELVNTGARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADIP 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKG 467 >gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 494 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F + +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMVHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++T IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|23011653|ref|ZP_00051948.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 194 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/127 (37%), Positives = 75/127 (59%) Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 IDESYNANPAS++AA + L+ + +GRRIAVLGDM E+G ++ H +LAE ++ I Sbjct: 53 IDESYNANPASIRAAFATLAGVETGPKGRRIAVLGDMKELGAAGEAHHRELAEAVAANGI 112 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 V+ +G + L +ALP ++ + L + ++L GD V+VK SNS +++ Sbjct: 113 DLVFTAGPLMAHLFEALPVAVRGTAAPKAAELTDAVLATLRPGDAVMVKGSNSMRMGQIV 172 Query: 462 NLLLEEF 468 + + Sbjct: 173 EAVKARY 179 >gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] Length = 494 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 73/474 (15%), Positives = 148/474 (31%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F + ++ + + + V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V ++ IKA+ P EGR L+ + Y Sbjct: 298 GKFNISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 M I + + L M GE + ++ V +V + Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405 Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + + H +Y + GD VV+ +S Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458 >gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D/UW-3/CX] gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276] gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276s] gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia trachomatis D/UW-3/CX] gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9768] gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11222] gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11074] gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9301] gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-EC] gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-LC] Length = 483 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 149/477 (31%), Gaps = 56/477 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LLQ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 3 LDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + LS+ +D + LA +I ITG+ GKTT Sbjct: 63 AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 ++ + + IG+ + +G + + + + +S Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +G V+T I HL +EE +AK + F L + G +N D Sbjct: 179 SIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + S+ + AD++ + K S S ++ QG+ IG Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGE 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N+L +L +V + F + Y P Sbjct: 295 HNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399 ++ +L Q+ P +GR I V G G L +S + Sbjct: 351 DALDNVCRILLQLLPK-DGRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405 Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + H S D D+V+V K Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455 >gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] Length = 497 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 83/484 (17%), Positives = 158/484 (32%), Gaps = 49/484 (10%) Query: 1 MNPLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M L+ +LL+ + V GIS +S S +E F + G DG +F Sbjct: 1 MVKLY---ELLKKVPSIIEIPTHKALNEEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFW 57 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAI--- 113 A++ GA VV++ + V V+DV+ +++A A I I Sbjct: 58 QSAIKAGAVAVVISPQAAIKFPINDLHCVIIVEDVILTASEIATAFYSYPSEDIKMIGVT 117 Query: 114 --------TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-------LARMPV 158 T + T+ AL + + P + + Sbjct: 118 GTNGKTTTTHLIEYFLTECKKNTALIGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAVID 177 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 ++ + E+ SH + ++++ T + HL +E AK +F Sbjct: 178 KNEYCVIEV-SSHALVQGRVKGCG-FNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPEY 235 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G +N DDS+ E L + K ++ ADF ++ ++ G Sbjct: 236 LQGKAVVNIDDSYGERLIQ--YLGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPG 293 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + E +G N+L + + L D++T I L F GR ++ + Q Sbjct: 294 GNFEFQSPLVGKFNLSNLLAAIATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDI 353 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 ++D ++ + ++L P G+ I V G G + + Sbjct: 354 SVIVDYAHTPDSLE-----NLLKATRPFISGKVICVFG----CGGDRDRSKRSIMGKICA 404 Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L+ + + + +P++ + GD V++ Sbjct: 405 KLADISVLTSDNPRTEEPEQILSDILEGVPKNANFWVISNRTEAIKTAILKADPGDGVLI 464 Query: 450 --KS 451 K Sbjct: 465 VGKG 468 >gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] Length = 494 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 150/472 (31%), Gaps = 43/472 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T + I G + Q + G +DSR + P + + I G H DGHDF AV+ GA Sbjct: 9 TLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKAGA 68 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123 + V L +P V ++ K+A A K +I +TG+ GKTT Sbjct: 69 AALAVER-----YLPLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLELIGVTGTNGKTTVT 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LGM 169 ++ K IG+ + IG A + ++ + E + + Sbjct: 124 HLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVMEV 183 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S R A+ T + HL +EE +AK +F + + Sbjct: 184 SSHALDLGRIVGCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQMSGEKPGQKAILN 243 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + ++G K AD+Q K + + ++ + +V G Sbjct: 244 ADDQA-SEYLMTKTSCRVVTYGIEKKADYQAEKIVLSDKGIYFDLVYKKIREKVFFATPG 302 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L + + KAL GR + R + + Sbjct: 303 KFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKGQPFLVIIDYAHTPDG- 361 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +VLS R I V G G L + +V ++ Sbjct: 362 ------LENVLSTAREITGRRLITVFG----CGGDRDRGKRPLMAEAASGWSDYVIVTSD 411 Query: 410 HV------LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D LP V + +GD V++ K Sbjct: 412 NPRTEDPEKIIGDILPGMGKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKG 463 >gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 31758] gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis PB1/+] gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 31758] gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia pseudotuberculosis PB1/+] Length = 495 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP+ + +++DSR A + F A+ G DG +I A+ +G +V D VA S Sbjct: 16 DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75 Query: 81 L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV + ++ L+ LA + ++ +TG+ GKTTT ++L ++ Sbjct: 76 VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180 + + N +G + + +S G I+ Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 195 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + V T ++ HL + +AK +F + I DD L Sbjct: 196 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 255 Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A+ + + K N + K + + E+ +G N+L+ Sbjct: 256 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 315 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + + + A P GR + + + +A Sbjct: 316 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 368 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L+ H G+ V G G L ++ V ++ + Sbjct: 369 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 424 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V + DVV++ K Sbjct: 425 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467 >gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 32953] gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 32953] Length = 490 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP+ + +++DSR A + F A+ G DG +I A+ +G +V D VA S Sbjct: 11 DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 70 Query: 81 L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV + ++ L+ LA + ++ +TG+ GKTTT ++L ++ Sbjct: 71 VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 130 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180 + + N +G + + +S G I+ Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + V T ++ HL + +AK +F + I DD L Sbjct: 191 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 250 Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A+ + + K N + K + + E+ +G N+L+ Sbjct: 251 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 310 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + + + A P GR + + + +A Sbjct: 311 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 363 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L+ H G+ V G G L ++ V ++ + Sbjct: 364 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V + DVV++ K Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 462 >gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b] gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b] Length = 495 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 129/477 (27%), Gaps = 45/477 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSRS A + F A+ G H DG FI A+ +G Sbjct: 5 NLRDLL----APWVPGAPARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A G + +PV + + L+ LA + + I + Sbjct: 61 AAVIAEAEGEAIDGDIREIHGVPVIYLAQLPQRLSALAGRFYQQPAEKLKLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T IA + G+ L + Sbjct: 121 TTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVATENTTGSAVDVQHVLHDLVGQGATLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + + A + + G + Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDM-QSYEAAKWLLFSEHQVGAAII 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD AK T+ + L+ + + Sbjct: 240 NADDEVGRRWLAKLPDAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFSSSWGDGEF 299 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + L + ++L+ D S G+ + ++D + Sbjct: 300 DSRLMGAFNVSNLLLALATLLSLDYPLDALVSSATQLLPVTGRMEVFSAPDKPTVVVDYA 359 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + L H +G+ + G G L ++ V Sbjct: 360 HTPDALE-----KALEAARLHCKGQLWCLFG----CGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L D+V+V K Sbjct: 411 ITDDNPRSEDPQAIVNDILTGLLDPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKG 467 >gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae] Length = 495 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80 + + +DSR I + F AI+G DG FI A+ +GA LV+ D G Sbjct: 25 LVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 84 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134 +PV + ++ L++LA +I +TG+ GKTT +++ L ++ Sbjct: 85 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144 Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186 T T + + L S G ++ + Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 V + ++ HL +E A+AK +F I D + +K A+G+ Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + ++ + + + + E+ IG A N+L+ L + L Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P GR + ++ + +A L + H Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 G+ A++G G + ++ V L+ + + Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L H + D++++ K Sbjct: 432 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467 >gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] Length = 490 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 98/483 (20%), Positives = 169/483 (34%), Gaps = 53/483 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DL+ ++ + G+S S + + F +G +D H+ I ++KGA Sbjct: 9 NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTK 123 VVV ++ L P V D K+A ++ TG+ GKTTT Sbjct: 64 VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118 Query: 124 EMLTIALSSIKKT---------YACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGM 169 M+ L+S+ + SY + I P + + + F L + Sbjct: 119 MMIYHMLTSLGERGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S ++ VR + + T I+ HL E AK +F+ L+ G LN Sbjct: 179 SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--- 235 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 E L + +FG SKNAD++L + E + ++ ++V IG Sbjct: 236 ---ESLADAFNRKS--RKITFGTSKNADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIG 290 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A N + + L D +L F EGR + R A G ++D +++ + Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPD 350 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407 +L + +GR I V G G S + ++ + V L+ Sbjct: 351 ALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLANVVILTTD 401 Query: 408 ---GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 G + L + + + GD VV+ Y++ Sbjct: 402 DPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERYQI 460 Query: 461 INL 463 I+ Sbjct: 461 IDE 463 >gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC3088] gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC3088] Length = 487 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 157/470 (33%), Gaps = 45/470 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + GI DSR+ + F A+ G + G DF+ AV +GA Sbjct: 8 LSELCADLGYCVR----DAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGAS 63 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + +M I + V DV +A+ + + +A+TG+ GKT+T + Sbjct: 64 GIIADEEM---NLPDHIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTSTVQ 120 Query: 125 MLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMS 170 +L L + + S N V + + L S Sbjct: 121 LLAQLLGELDQAAATVGTLGFQLPTGFSPSSNTTPDVVEIHRFLASAAAQNVRWAALEAS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ + A IT I HL + E +AKA+I L + L+ D+ Sbjct: 181 SHGLVQHRLTGLNITTAAITNITQDHLDYHGTMTEYIAAKAQIL-ALSGLRAVVLDLDNP 239 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L+ + A ++ G+ +A + + ++ + V+L G + +G Sbjct: 240 EVRALRPQVPANVQVLGFTLGEVADA-DAVVVAQYDADGTTATVRLDGFEYRLRLPLVGE 298 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 +N L L ++ + + A GR R L+ +D ++ + Sbjct: 299 FYLRNTLTALFMLRAEGLRFEDLVAAAGRLRGVPGR--LERVGLDSDVAVYVDYAHTPDA 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + VL + P + V G G L + V L+ + Sbjct: 357 IA-----RVLQVLRPTVKNDLWVVFG----CGGDRDKSKRPLMGRAAAEGADWVVLTSDN 407 Query: 411 VLA-----LKDALPRSI-HVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451 A + D + H E + GD +V+ K Sbjct: 408 PRAEDPSKILDDIQVGCAHARLVIEDRAVAIESAIMAASPGDTLVIAGKG 457 >gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus stomatis DSM 17678] gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus stomatis DSM 17678] Length = 495 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 71/480 (14%), Positives = 143/480 (29%), Gaps = 51/480 (10%) Query: 5 WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +LL + I + + + ++ I DSR F AIKG DGH ++ A Sbjct: 1 MKLSELLTGLEYISNRDMDQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYVDSAY 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG---- 115 QKG VVN +M + + VDD L+ ++ +I +TG Sbjct: 61 QKGCRAFVVNDNMD---LAEDAIMIIVDDSRNCLSHISANFFGNPSKELKVIGVTGTKGK 117 Query: 116 -----------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + T + T + I + + R VD Sbjct: 118 TTITNYLKSVLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYEL-HKTIREMVDAGVKC 176 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222 + +S G + + V I + T ++P H+ E+ K+ + + Sbjct: 177 VAMEVSSGGLMMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRL-------FS 229 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + + + + I +F K +D++ ++ + V + Sbjct: 230 LCRHGIINIDDDHASYMIDKATCDIETFSIKKPSDYRAEDISLTRTKTSLGVDFKYIRDG 289 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + + V + + R + T++ Sbjct: 290 QASQTHIASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQVDGRVEVIPSIPDITVV 349 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + + +VL + + R I V G + G S +L +V + Sbjct: 350 LDYAHNGVS----LENVLETLLKYKPRRLICVFGSI---GGRSVLRRKELGDVAAKLCDI 402 Query: 403 HVWLS----GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + S V L GD+V+V K Sbjct: 403 SILTTDNPDDEDPMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAGKG 462 >gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 491 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 78/462 (16%), Positives = 148/462 (32%), Gaps = 52/462 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81 + I DS+ + F A+ G DGH +I +A GA + V++ + Sbjct: 20 DLEIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVE 79 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + V+D AL ++ TI+ ITG+ GKTT + L + + Sbjct: 80 IIQNSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDIS 139 Query: 137 YACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 IG+ + + VD + + +S G + H + Sbjct: 140 CGVIGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGI 199 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 A+ T ++ H+ E E + + Y + +K Sbjct: 200 EFDYAIFTNLSHDHIG------EKEHPTFEHYRECKSMLFAMSKYSIINIDDENSKVMIE 253 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 K ++ ++DFQ + S S M + + V + G N L T+ + Sbjct: 254 KSKDYKTYSIDSSSDFQAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTIML 313 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + L R + +I + Y N S++ + + + Sbjct: 314 CEQLGLSYQSIYTGLEK----AHVKGRLQVIDGFTDIKVIID-YAHNEVSLENVLQTVKE 368 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417 + P + VL +G SQ+ +LA V S Y + ++ + + D Sbjct: 369 LKPKR----LIVL--FGSVGTRSQNRREELATVASKY-CDVIIVTSDNPDTENPQKIIDE 421 Query: 418 L------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + GDV+V+ K Sbjct: 422 IVSHISQDKKKYTYCYADRAVAIQKAIEMSQKGDVIVLAGKG 463 >gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plautia stali symbiont] Length = 495 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 45/477 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + + +++DSR+ A + F A+ G H DG FI A+ +G Sbjct: 5 NLRDLL----APWVPGALARPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 V+ + AS G + +PV + + L+ LA + K +I +TG+ GK Sbjct: 61 AAVIAEAEGEASDGDIREMHGVPVIYLAQLPQRLSALAGRFYQQPADKLKLIGVTGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165 TTT +++ + + +T N G + + Sbjct: 121 TTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLVGQGATVA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL ++ SAK +F + I Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSEHQVGEAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D+ L+ A+ + + + + Sbjct: 241 ADDEVGRRWLEKLPDAVAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFSSSWGNGEFD 300 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + L+ + + A + R T++ + Sbjct: 301 SRLMGAFNVSNLLLALATLLTLDYPLDTLVASASQLQP--VCGRMEVFTAVHKPTVVVDY 358 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + A L H +G+ V G G L ++ V Sbjct: 359 AHTPDA----LEKALEAARLHCKGQLWCVFG----CGGDRDKGKRPLMGAIAEQFADIVV 410 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L D+V+V K Sbjct: 411 ITDDNPRSEEPTAIINDILTGLLDPGRACVIAGRAQAVTHAVMQASADDIVLVAGKG 467 >gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella pealeana ATCC 700345] gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC 700345] Length = 488 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 82/452 (18%), Positives = 145/452 (32%), Gaps = 43/452 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVF 86 I++DSR++ F AI G DG FI A ++GA +V+TD G + Sbjct: 22 ITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQI 81 Query: 87 GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT-TTKEMLTIALSSIKKTYACIGSY 143 + ++ LA A +S+ I+ +TG+ GKT T+ + + L K+T Sbjct: 82 LFFQLNRQISALAAQAYPLSQSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGTLG 141 Query: 144 NNHIGVPLTLARMPVDVDFGI-------------FELGMSHLGEIRFLTHLVRPHIAVIT 190 N G + D I + +S G ++ V +AV T Sbjct: 142 NGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGRVEAVPFDVAVFT 201 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +EE AK +F+ G + D E L A +S Sbjct: 202 NLSRDHLDFHHTMEEYGIAKKRLFQFANLRGGLINIDDVVGREWLAD--LASDKLLGFSV 259 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 AD + + ++ +G N++ LG + +L D+ Sbjct: 260 KGDSTADIYTKDNHFHDGGVSCTLVWPTGEAQLNSPLLGDFNLSNLVAALGALYLLGEDM 319 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 T + P GR +R+ + +A L + H +G+ Sbjct: 320 HTLVALAPKLEPVAGRMERFTSKDGVTLVVDYAHTPDA-------IEQALKALRVHCKGQ 372 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421 + G G + + V ++ + + L Sbjct: 373 LWCLFG----CGGDRDKGKRPMMAASAEQFADRVMVTSDNCRSEDPNAIISDILAGLQHP 428 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 I + GD+V++ K Sbjct: 429 QQALSQVERQVAIKEIVAQAASGDMVLLAGKG 460 >gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 143/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + ++DSR A + F A+ G DG +I A+ +G Sbjct: 4 NLRDLL----APWVPDAPSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 60 AAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------- 167 TTT ++L + + + N +G + EL Sbjct: 120 TTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179 Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 +S G ++ ++ +V T ++ HL E +A ++ I Sbjct: 180 AXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSEHHCGQAIIN 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 240 ADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H G N+L+ L + L + +K + P GR + + Sbjct: 300 SHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVFTAPGKPTVVVDYAH 359 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 360 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLXGAIAEEFADVA 408 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + H E + DVV+V K Sbjct: 409 VVTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKG 466 >gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bryantella formatexigens DSM 14469] gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bryantella formatexigens DSM 14469] Length = 524 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 86/478 (17%), Positives = 154/478 (32%), Gaps = 51/478 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + V I DSR + FF IKG DGH + QKG Sbjct: 38 MKLTKLLERVEYECVQGNTDIEVTDIVNDSRKVREGCLFFCIKGAVADGHKYAAEVAQKG 97 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 AG+ + V V D A+ +A A K +I ITG+ GKTTT Sbjct: 98 AGV---LVVQDDVQVPGDVTVIKVADSRYAMALIAAAWYGHPAEKLKVIGITGTKGKTTT 154 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L + IG+ IG D + E Sbjct: 155 TYMIKSILEAAGHKVGLIGTIEAIIGDKVIPASNTTPESTTIQKYFAEMAEAGCDCVVME 214 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S G + T I + T + P H+ E+ K Sbjct: 215 V--SSQGLMLHRTVGFTFEIGIFTNLEPDHIGPAEHENFEDYLRCK-------AMLFKQC 265 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + ++G + ADF+ + + S+ ++ + Sbjct: 266 RHGIFNADDAHLEAILEGHTCDVETYGFGEKADFRASEAQLVSKPGYLGIAYHVTGKRNF 325 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 I ++ +L +++ K ++ + +G+ ++ F +ID Sbjct: 326 FVEIDIPGKFSIYNSLAAIAVCDYFGVEEEKMIAALKKAKVKGRIEMIKVSDEFTLMIDY 385 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++NA + S+L+ + + GR + V G G S++ ++ EV Y + Sbjct: 386 AHNA-----MSLESLLTTLKEYNPGRLVCVFG---CGGNRSRARRFEMGEVSGKYADFTI 437 Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S A+ + I + GDV+V+ K Sbjct: 438 ITSDNPRYEEPEAIIADIETGIAKTDGKYIKITDRKEAIAYAIHHGQPGDVIVLAGKG 495 >gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidothermus cellulolyticus 11B] gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidothermus cellulolyticus 11B] Length = 522 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 73/476 (15%), Positives = 139/476 (29%), Gaps = 52/476 (10%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + G + G++ DSR + P + F A+ G H G ++ AV GA V+ + Sbjct: 28 GPAAGSTAGILICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTD-PAG 86 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSI 133 AS+ + +P+ D L +A A ++ +TG+ GKTTT L L + Sbjct: 87 ASLINREVPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRAA 146 Query: 134 KKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFELGMSHLGEIRFLT 179 +G+ +G VP D + +S Sbjct: 147 GHRTGLLGTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRV 206 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 T ++ HL +E A A+ + K + + Sbjct: 207 DGTGFACVGFTNLSHDHLDFHGDMENYFAAKARLFRPDFAPKAVIVVDDEYGRRLADTAP 266 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQ-------CSEQSWMEVQLQGKSMEVVHHGIGY 290 + + D+++ + V +E+ G Sbjct: 267 IAVRTVSGRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLPGR 326 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N L+ L I+ + V+ A + GR + Sbjct: 327 FNLTNALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDAGQPFAVLVDYA------- 379 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 A++ +++ GR I V+G G+ S + + ++ S Sbjct: 380 -HTPEAVATVAREVRPDRGRLIIVIG---CGGDRDPSKRPAMGAAAAELADLAIFTSDNP 435 Query: 409 --FHVLALKDALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ + ++ + GDVV++ K Sbjct: 436 RSEDPEEIVAAMLTGVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKG 491 >gi|65317674|ref|ZP_00390633.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 247 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 9/220 (4%) Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 +FG ++ D+ + + + +++ +G H N L ++ I Sbjct: 34 TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAKYFGV 92 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 + + L + G R T+I+++YNA+P +M+AA +++ + + Sbjct: 93 TWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDGFSK 149 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVH 425 I VLGDM E+G+ FH ++ +++ IS+V+ G + + + V Sbjct: 150 K--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPNERVK 207 Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 + + L +Q+ + DVV+VK+S +I +L Sbjct: 208 AYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 247 >gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 145-7] gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 145-7] Length = 471 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae 342] gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae 342] Length = 495 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 65/478 (13%), Positives = 140/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F A++G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPNAPERILREMTLDSRVAASCDLFIAVQGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 ++ A G + +PV + + L+ LA + + + + Sbjct: 61 AAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ + + Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + ++ + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGNGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467 >gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CB0101] Length = 506 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 73/479 (15%), Positives = 137/479 (28%), Gaps = 40/479 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+ + + V +S DSR + P F + G DG F A++ GA Sbjct: 5 LHPLLRQVGLAVPPGLANADVTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAV 64 Query: 67 LVVVNTDMVASIGSLSI-PVFGVDDVL-GALNKLAVAARLRSKATIIAI------TGSVG 118 L V+ + PV V D + LA + + I + Sbjct: 65 LAVIGRAAAEACPPADQDPVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTT 124 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------DVDFGIFELG 168 + + + + + H + + + Sbjct: 125 THLIEHLAASCGTPSALFGTLVNRWPGHSVTAQHTTAFADVLQGQLAQAAEAGAQVGAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS-----AKAEIFEGLEKTGTI 223 +S + R AV T + HL ++ A E E T Sbjct: 185 VSSHALDQQRVSGCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATA 244 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 +N DD + + L + G S +S A+ ++ + + SE + S Sbjct: 245 VVNVDDPWGQQLAERL--GGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSGPF 302 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N L +G + + ++ L+ F GR +R + + Sbjct: 303 QSPLLGRFNLMNQLQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGVGRAECCEGSLP 362 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + S L P +G+ I V G G L ++ Sbjct: 363 AVLVDYAHTPDGLESALKACRPFAQGQLICVFG----CGGDRDRTKRPLMGSIAARLADQ 418 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + +P V + ++ D+V++ K Sbjct: 419 VVVTSDNPRTEDPQQILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKG 477 >gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Rhodococcus opacus B4] gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Rhodococcus opacus B4] Length = 496 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 142/475 (29%), Gaps = 48/475 (10%) Query: 7 FHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 ++L+ + ++ V GI+ DSR + + + A+ G H G +F A +GA Sbjct: 14 LPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGA 73 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123 ++ + S +P V D L LA + +TG+ GKT+T Sbjct: 74 VAMLSDR------TSDVLPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTNGKTSTV 127 Query: 124 EMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIF-------------ELGM 169 +L L + + G + R + + + Sbjct: 128 YLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIGAVAMEV 187 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + V T +A HL ++ +AKA +F+ + DD Sbjct: 188 SSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFD-PRHCAAAAIGIDD 246 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 F L A + + + ++ AD + + G + V +G Sbjct: 247 EFGRRLAA---TVTVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGDRISVRLRLLG 303 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 H N L + + + D AI + GR + F + Sbjct: 304 VHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDAGQPFFAFVDYMHNTAG- 362 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406 + + GR IAV+G GE L + + + V Sbjct: 363 ------QRRLFPYLRSLTAGRVIAVVGA---TGERDPGKRAPLGATAARFADAVVVTDES 413 Query: 407 -SGFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L++ + R V + GDVVVV Sbjct: 414 PYSEDAQRLREDVARGARSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAG-RG 467 >gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rustigianii DSM 4541] gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rustigianii DSM 4541] Length = 495 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 73/453 (16%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+KG DG +I A+ +G ++ A G + +PV Sbjct: 26 TLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAIIAEAQGEAEEGEIRVVHGVPVI 85 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + D+ L+ LA + K ++ +TG+ GKTTT +++ + + + Sbjct: 86 YLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTVG 145 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G E + +S G I+ + AV T Sbjct: 146 NGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLIQGRVAALNFDAAVFT 205 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK +F + I DD + L A + Sbjct: 206 NLSRDHLDYHGDMENYEAAKWLLFSTHQTKTQIINADDDVGLKWLHRLPQACAVTMENRI 265 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 K+ + + + + + +G N+L+ + + ++ Sbjct: 266 PKNWQGSWLKATNVDYHDKGATIHFASSWGEGSFESPLMGAFNVSNLLLAMATLLMMDYP 325 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D + A P GR + + + +A L H +G Sbjct: 326 LDKLLAATDFLMPVCGRMEVFSTEGKPTVVVDYAHTPDA-------LEKALLAARLHCKG 378 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L + V ++ + + + Sbjct: 379 KLWCVFG----CGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEEPLDIINDIMAGILD 434 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S V DV++V K Sbjct: 435 SSRVLAIPGRPEAVTSTILQAQPDDVILVAGKG 467 >gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] Length = 511 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 72/456 (15%), Positives = 139/456 (30%), Gaps = 34/456 (7%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + V G++ DSR++ E FFA+ G + DG +I A+ GA VV Sbjct: 39 IAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQAIANGAVAVVGEQ---FP 95 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + + V + AL A R ATI A+TG+ GKT+ + Sbjct: 96 DSDHRVALVRVANPRRALALAAARMFPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGFAA 155 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVR 183 A IG+ + + L S G +F VR Sbjct: 156 ASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAGEGVTHLALEASSHGLDQFRLDGVR 215 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A T ++ H+ + +AK +F L G + D + Sbjct: 216 VSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGAAVISADHEHSEAVIAAARAR 275 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G++ N +R + + ++ + E Q + Sbjct: 276 GLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRERGLRLPLVGEFQIENALVAAG 335 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + D ++ H + +G+ G +D ++ + + L + Sbjct: 336 LAIGTGGDAEQVFAALQHLEGAKGRLELVGDRNGAPIFVDYAHKPDALA-----KALQAL 390 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417 P+ + + I V G G + L ++ V ++ + + Sbjct: 391 RPYAKRKLIVVFGA----GGDRDAGKRPLMGAIATGLADSVIVTDDNPRSEDPAAIRAAI 446 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +L GD +++ K Sbjct: 447 MAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKG 482 >gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 507 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 164/476 (34%), Gaps = 50/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 D+L+ GH P V GI+ +S + P F AIKG DG+ + A+ Sbjct: 1 MKITDILKM--GHLNYSEPLNQSRNVKGITDNSNEVRPGYIFIAIKGHKEDGNIYTQQAI 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGK 119 GA L++ D +L++P V + L ++A +I ITG+ GK Sbjct: 59 LNGAILIIGEDDFT----NLTVPYLKVKNARKTLGQVAKKFYKDPSKNKIMIGITGTNGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFELG 168 TT + L + + IG+ N I T+ ++ + + Sbjct: 115 TTIGFFIKQLLEKQGYSVSSIGTIYNEINGKRIQSVNTTPNAKTINQLLTASTDQVVVME 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + ++ A+ + HL +EE KA +FE L+ GT +NY+ Sbjct: 175 VSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLFEKLKLDGTAIINYN 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + L + A G + + G+ Q+ + + + V+ + K + Sbjct: 235 DRWGKKLTERLTAQGK-KVITVGEEPTNQVQILAKELNN----VSVRYKNKEYNLRTPLP 289 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H +N+ M+ + L + +S F GR + + A + +A Sbjct: 290 GVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLANKVTVVVDYAHTPDA 349 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 S+ AIS ++ G G +S + E + + + Sbjct: 350 LATSINTAISNGAKRIITVFGFA----------GNRDESKRKAMLENVCRLSTYAILTVT 399 Query: 409 FHVLALKDAL-------PRSIHVH----YSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L + V GD V++ K Sbjct: 400 ELFGSTIDNLYSDYISIQKECQVEEKTSIIMDRTLAIQKAIWEAQSGDWVLLLGKG 455 >gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827] gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827] Length = 471 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 76/453 (16%), Positives = 147/453 (32%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F AIKG DG +I A+ +G VV A+ G + +PV Sbjct: 2 TLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPVV 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 ++D+ L+ LA A K ++ +TG+ GKTTT +++ + + + Sbjct: 62 YLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G E + +S G ++ + AV T Sbjct: 122 NGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK +F + I DD + L+ A + Sbjct: 182 NLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQIINADDDVGLKWLQRLPQACAVSMEQRI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + Q + + ++ + + +G N+L+ + + + Sbjct: 242 PEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATLLTMDYS 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ ++A S P GR + + + +A L+ H +G Sbjct: 302 LEQLLEASSSLSPVCGRMEVFSAPNKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L + V ++ + + + Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S V DV+V+ K Sbjct: 411 SSRVLAIPGRAEAVTSSIMQANADDVIVIAGKG 443 >gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM 10] gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Antiqua] gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Nepal516] gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Pestoides F] gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Angola] gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Pestoides A] gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Nepal516] gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM D27] gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis Z176003] gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10] gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Nepal516] gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Antiqua] gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Pestoides F] gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Angola] gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Nepal516] gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Pestoides A] gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis D106004] gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM D27] gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis Z176003] gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP+ + +++DSR A + F A+ G DG +I A+ +G +V D VA S Sbjct: 16 DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75 Query: 81 L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV + ++ L+ LA + ++ +TG+ GKTTT ++L ++ Sbjct: 76 VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180 + + N +G + + +S G I+ Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 195 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + V T ++ HL + +AK +F + I DD L Sbjct: 196 ALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 255 Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A+ + + K N + K + + E+ +G N+L+ Sbjct: 256 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 315 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + + + A P GR + + + +A Sbjct: 316 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 368 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L+ H G+ V G G L ++ V ++ + Sbjct: 369 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 424 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V + DVV++ K Sbjct: 425 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467 >gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis FV-1] Length = 478 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 75/461 (16%), Positives = 145/461 (31%), Gaps = 43/461 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 P+ + +++DSR A + F A+ G DG +I A+ +G +V D VA S+ Sbjct: 1 PERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVA 60 Query: 82 ---SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KK 135 +PV + ++ L+ LA + ++ +TG+ GKTTT ++L ++ + Sbjct: 61 EIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGET 120 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLV 182 + N +G + + +S G I+ + Sbjct: 121 SAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAAL 180 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 V T ++ HL + +AK +F + I DD L A+ Sbjct: 181 SFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQAV 240 Query: 243 GIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + K N + K + + E+ +G N+L+ L Sbjct: 241 AVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVALA 300 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + + A P GR + + + +A L+ Sbjct: 301 TLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALA 353 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 H G+ V G G L ++ V ++ + Sbjct: 354 AARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVA 409 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V + DVV++ K Sbjct: 410 DILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 450 >gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] Length = 539 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 83/468 (17%), Positives = 148/468 (31%), Gaps = 36/468 (7%) Query: 4 LWTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 + +LL S+ + ++GI+ DSR + P F A+ G DG FI A Sbjct: 49 MMMLSNLLADTSAAPVTSLTGMAGVHISGITADSRQVMPGWVFAALPGQKTDGRRFIADA 108 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ G P+ + L +A TI AITG+ GKT Sbjct: 109 VERGAAAILAPAGTAWPPGVPPRPMIQDAEPRRLLALMAARLAGAQPHTIAAITGTNGKT 168 Query: 121 TTKEMLTIALS------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-- 166 +T + L + + + + GI Sbjct: 169 STADFLRQIWTLLGRSAASLGTLGLIAEGFHPQDSLTTPDPVTLAQTLAMLARAGIQHTA 228 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L S G +F VR A T + HL +AK +F L G + Sbjct: 229 LEASSHGLDQFRLDGVRLSAAAFTNLTRDHLDYHGTEAAYRTAKLRLFADLLPAGAPAIA 288 Query: 227 YDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 L+A + A S ++ L + + ++ ++ +G + + Sbjct: 289 SPTLDQITLEALRGIARRRGLRLIIAGSPDSPLPLLAIEPHAGGQYLTIREEGTTHRINV 348 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G A N++ I + L + LS GR ++ N +D + Sbjct: 349 PLPGRFQADNIITAATIAASLGKRGIVPL--LSRLTGVRGRMEQAATLPNGA-AIYVDYA 405 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + +L + PH G+ V G G L + + + Sbjct: 406 HTPDALE-----RLLDALRPHTSGKLHVVFGA----GGDRDPGKRPLMGEAARTHADRLI 456 Query: 406 LSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVV 447 ++ + ++ A+ + SL GDV+ Sbjct: 457 VTDDNPRSENPAKIRAAILAACPDAEEIGDRAEAIAHAIRSLQPGDVL 504 >gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 115-1] gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 187-1] gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 115-1] gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 187-1] Length = 471 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] Length = 479 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 81/471 (17%), Positives = 154/471 (32%), Gaps = 51/471 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 LL+ +Q + G+ DSR I F A++G DGH FI A++KGA L Sbjct: 2 EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 61 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125 ++V+ ++ I + ++ L LA + I+ +TG+ GKTTT + Sbjct: 62 IIVSKEVP---CQKGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYL 118 Query: 126 LTIALSSI-------KKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSH 171 L L + P + +++ I E+ SH Sbjct: 119 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEV-SSH 177 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 E+ + +++ A+ T + HL +E+ AK ++F L LN DD + Sbjct: 178 ALELGRV-NMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVLNVDDEY 236 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L+ + H + T +++ E +V+L + Sbjct: 237 GRRLQEEFHGISYGTKQ---------AEVQGKILGFEGGKEKVELSLFGKKKECKIQILG 287 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 + I + + V + G+ Q + +ID ++ + Sbjct: 288 GFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDAL 347 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 ++L I + I + G G + ++ V L+ + Sbjct: 348 E-----NILQAIQEIKTKKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNP 398 Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + H+ E GD+V++ K Sbjct: 399 RTENPESILEEVKGGFTKENHICVLE-RAEAIAEGIRRAEKGDIVLIAGKG 448 >gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis CA88-4125] gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis CO92] gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate ligase [Yersinia pestis CO92] gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis CA88-4125] Length = 490 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 VP+ + +++DSR A + F A+ G DG +I A+ +G +V D VA S Sbjct: 11 DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 70 Query: 81 L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133 + +PV + ++ L+ LA + ++ +TG+ GKTTT ++L ++ Sbjct: 71 VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 130 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180 + + N +G + + +S G I+ Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 190 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + V T ++ HL + +AK +F + I DD L Sbjct: 191 ALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 250 Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A+ + + K N + K + + E+ +G N+L+ Sbjct: 251 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 310 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + + + + A P GR + + + +A Sbjct: 311 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 363 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L+ H G+ V G G L ++ V ++ + Sbjct: 364 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419 Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V + DVV++ K Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 462 >gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252] Length = 538 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 154/364 (42%), Gaps = 21/364 (5%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 A KLA TII ITGS GKT+TK ++ LS + A GSYN +G+ Sbjct: 177 RKARRKLAAH----PNLTIIGITGSYGKTSTKFIIAEILSLRYQVLATPGSYNTPMGICK 232 Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + + + + E+G+ H G+IR L + RP I V+T + P HL IE IA K Sbjct: 233 VINEQLRPEHQVLVLEMGIRHPGDIRELCAIARPDIGVVTAVGPMHLETMGSIEAIAREK 292 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 +E+ G + LN DD + + A G S + AD R E + Sbjct: 293 SELVACTRPGGPVVLNADDPRVAAMAER--ARGPVWRVSVEGNPEADLVARDITYGPEGT 350 Query: 271 WMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V+ + + + +G H N+L+ L + I + A++ P E R + Sbjct: 351 RFVVRDETGTEQVFQTRLLGRHNVLNILLALAVGRIFGLRLRQMAHAVARLRPVEHRLQL 410 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R G T+ID+++N+NP + L + GRRI V M E+G + Sbjct: 411 RRE----GPITVIDDAFNSNPVGA---RNALEILGQFRTGRRIVVTPGMVELGAREAEEN 463 Query: 390 IDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 L ++ ++ L G L++A +H ++ F+++ L G Sbjct: 464 RALGRFMAQ-HVDLAVLIGPRRTLPIQEGLREAGFPEDRIHVFRSLFEAQDFLKTYLQPG 522 Query: 445 DVVV 448 DVV+ Sbjct: 523 DVVL 526 >gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae PB189-T1-4] gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae PB189-T1-4] Length = 545 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 14/215 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQ------GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 T D+ A I + V+ + IDSR + F A G H +G+D+ L Sbjct: 5 TVQDICSATSAQVIAPLAAGASCTLRSVD-VVIDSRRVQKGSMFVAFIGEHTNGNDYALR 63 Query: 60 AVQKGAGLVV----VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLR-SKATIIA 112 A++ GA + + D++ + + DD L +LA R + ++ Sbjct: 64 AIEAGAACICLTQDASQDLICAAEQNGCVLLRAQNDDAETFLLRLASWWRTQNMHWIVVG 123 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 ITGS GKTTTK++ AL++ + +A G++NN IGVPLT+ + + E+GM+H Sbjct: 124 ITGSCGKTTTKDLCAQALATRYRVHATQGNFNNLIGVPLTILSASAQDEVIVCEMGMNHP 183 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 GE+ L+ + P + VIT I +H+ E IA Sbjct: 184 GELATLSRVALPCLCVITNIGTSHIGILGSREAIA 218 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 10/191 (5%) Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + + L L I L D AI+A+ R Sbjct: 360 HALSMSQPSKAACIDALFALAIADELACDRSAAIRAIEACSCVH---MRLEEISRPHKPF 416 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 +ID+SYNA+PAS+ A++VL + + R IA+LG++ E+G S H + + Sbjct: 417 IIDDSYNASPASIAQALAVLHHCTGYT--RHIAILGEVGELGNQSARLHDYIGAYAAASG 474 Query: 401 ISHVWLS-GFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + + G + +A + +HY + L I L + D V+VK+S +C Sbjct: 475 VDMLVFVGGEDAKRMVEAARTMGYPAEQLHYVRDVHEAQLRIAPLLRETDAVLVKASRAC 534 Query: 456 GFYRLINLLLE 466 + +++ Sbjct: 535 MLDVFVKGVIQ 545 >gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 519 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 78/432 (18%), Positives = 147/432 (34%), Gaps = 40/432 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + L+ ++ H+ + DSR + P + F A G DG + A+ + Sbjct: 16 LGSVPEALEWLRAHAPHGA-------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V + V + + V + D+ A LA + ++A+TG+ GKT+ Sbjct: 69 GAAACLVEREGVEAFRFGAEGVAALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTS 128 Query: 122 TKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------------ 164 T L AL+ + C +GVP L + + Sbjct: 129 TTWWLADALNQLAGSGLAAHGGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAGFVAN 188 Query: 165 ----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + S +G +R +AV T HL +G+ AK+ +F+ Sbjct: 189 GLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDWPGLQ 248 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + D E A + A +++ + A Q R V ++ Sbjct: 249 AAVVNIDDPRGGE--LADTLAQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAEGVQA 306 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + IG++ N+L + + L ++ A+ A + P GR Sbjct: 307 HVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGR---MELIHEPDQPL 363 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + + Y P +++ A+ L ++ GR V G G L ++ Sbjct: 364 VAVD-YAHTPDALEQALQALRPVAEQRGGRLWCVFG----CGGNRDRAKRPLMGRIAQQR 418 Query: 401 ISHVWLSGFHVL 412 V ++ + Sbjct: 419 ADAVIVTSDNPR 430 >gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 119-7] gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 119-7] gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 117-3] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] Length = 491 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 71/451 (15%), Positives = 128/451 (28%), Gaps = 41/451 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87 I DSR + + F A+ G + DG FI AV+ GA +V + + V Sbjct: 26 IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVCLPGGAEAEAARAAGCTVVH 85 Query: 88 VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 DD AL +L A ++ +TG+ GKTT+ +L ++ +G+ + Sbjct: 86 HDDPREALWRLAEARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTVSY 145 Query: 146 HIGVPLTLARMPVDVDFGIFELGM--------------SHLGEIRFLTHLVRPHIAVITT 191 A + + + S + V A + Sbjct: 146 RWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQRVCGVPFAGASFSN 205 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL +E AK+ +F L + + D + + + Sbjct: 206 LTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELCPRALSFGLQKA 265 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + ++ + + L G+ E+ +G A N+L + L D Sbjct: 266 LPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQALALELGLMPD 325 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 L G R N + + + A ++VL + G R Sbjct: 326 D----LRHLEGFHGVCGRLERVPNARKLHVFVDYAHTPDA----LVNVLKALRGAGFKRI 377 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD----ALPRSI 422 + V G G + L+ A+ L Sbjct: 378 VTVFG----CGGNRDRTKRPIMGEAVARYSDVAVLTSDNPRFEDPEAILKDVLPGLREDR 433 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L D +++ K Sbjct: 434 EVVVEVDRRKATAKAVEMLGPDDALLIAGKG 464 >gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 198-1] gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 198-1] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 70/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L S A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLSDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LSDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 107-1] gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 107-1] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTALGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum PSI07] gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum PSI07] Length = 514 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 84/480 (17%), Positives = 147/480 (30%), Gaps = 53/480 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65 +L ++ H ++ D+R + + F A G H DG I A++ GA Sbjct: 19 VLDWLRAHVPAGAD------LTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQAIEAGA 72 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122 V+ + + VDD+ LA +I +TG+ GKT+ Sbjct: 73 SAVLAEAHGYVVPADAPLRILPVDDLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167 + + ALS + A +G+ + +LA + + + Sbjct: 133 SQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLAELHRAGARAVA-M 191 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + R IA+ T + HL + E AKA +F + Sbjct: 192 EVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRD 251 Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D + LL + G+ + + + ++ Sbjct: 252 DAAGVRLLTGLRAGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGTTFDIDGSFGRAT 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V +G N L LG++ + AI L P GR +R+ Sbjct: 312 VHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD- 370 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 Y P +++ + L+ I+ GR AV G G ++ Sbjct: 371 ---YAHTPDALEQTLRALAPITEARAGRLWAVFG----CGGDRDPGKRPQMGAIAERLAQ 423 Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 HV L+ + + + D + E L DV+VV K Sbjct: 424 HVVLTSDNPRSEDPQQILDMIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483 >gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH 8501] gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH 8501] Length = 501 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 79/458 (17%), Positives = 150/458 (32%), Gaps = 43/458 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-S 82 + V GIS +S S + F + G DG +F A++ GA +++ Sbjct: 27 EREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQSAMEVGAVAAIISPQAAQKFPPKDD 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK----- 135 V V+D++ ++A A + ++ ITG+ GKTTT ++ L+ +K Sbjct: 87 DCVIIVEDIITVAAQIAAAFYDYPAQQLKMVGITGTNGKTTTTHLVEYFLNQCQKPTALI 146 Query: 136 ---TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTHLVRP 184 G + + + ++ + E+ SH + Sbjct: 147 GTLYTRWPGFERTAVHTTPFAPELQEQLAEAVAANNEYCVMEV-SSHALVQGRVKQCP-F 204 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 ++V T + HL +E+ +AK +F +N DD + + L + Sbjct: 205 QVSVFTNLTQDHLDFHKDMEDYFAAKRLLFTPDYLQEKAIVNLDDPYGKRLIDSFQTEQV 264 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 T + ADF + + ++E +G N+L + V Sbjct: 265 WTY--SVEDTKADFYTSNLTYQANGVTGTLTTPFGNIEFTSPLVGQFNLSNVLAAVATVL 322 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L DV ++ L F GR +R + Q ++D ++ + ++L Sbjct: 323 YLGLDVREVVEKLPHFLGVPGRMERVQINDKQDISVIVDYAHTPDSLE-----NLLKAAR 377 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 P +G+ I V G G L S ++ + + Sbjct: 378 PFIKGKMICVFG----CGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDVL 433 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P +I GD V++ K Sbjct: 434 TGIPETIEPLVISDRAKAINTAILQANPGDGVLIAGKG 471 >gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E128010] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter tundripaludum SV96] gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter tundripaludum SV96] Length = 538 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 81/504 (16%), Positives = 160/504 (31%), Gaps = 68/504 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DLL + V G+ +DSR + + F A+ G G + AV GA Sbjct: 15 LKDLL--TGLATFLDQDDIPVAGLVLDSRELVCGDVFVALAGAKQHGLAHVEQAVNNGAC 72 Query: 67 LVVVN--------TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116 V+ + + S +P+ V+++ L +LA T+I ITG+ Sbjct: 73 AVIFDPAGNGRQLAEAFRCDSSTPVPMIAVENLGLKLGELAARFYCDPSQFMTVIGITGT 132 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------- 166 GKT+ + L+ L + + L + + + E Sbjct: 133 NGKTSCSQFLSQMLDDCGIIGTLGWGEWDKLNKTLNTTPDALAIQKILAELLKDKKRTVA 192 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G + + V AV T I+ HL ++ AK + + Sbjct: 193 MEVSSHGLEQGRVNGVTFKGAVFTNISRDHLDYHGTMDAYVQAKLALLKQPGLAFAAVNL 252 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVV 284 D ++ A ++ + GK+ ++ + + +V+ + + V Sbjct: 253 DDGYSERVIAAVPESVQLWQFSVKGKTADSGECVSAENILHKTDGIEFDVRFRDELQRVQ 312 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G +N+L L ++ + + A+K L+ P GR +R+ + F Sbjct: 313 VPLFGDFNVENVLAVLTVMLAMEVSLQEAVKKLAGIKPVNGRMERFGAETDPMIFVDYAH 372 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A VLS + H + V G G + ++ HV Sbjct: 373 TPDALD-------KVLSSLRKHCKQALWVVFG----CGGNRDTGKRPQMGKIAEQWADHV 421 Query: 405 WLSGFHVL-----ALKDALPRSI--------------------HVHYSETMDGLFLFIQS 439 ++ + + + + V + + + + Sbjct: 422 VITDDNPRYENGLDIVNDILAGCSSTAKDGGSVATDMEPVRPAKVEVIQNREQAIQKVVA 481 Query: 440 SLVDGDVVVV--KS------SNSC 455 S D +V+ K SN Sbjct: 482 SAAKNDCIVIAGKGHEQYQESNGV 505 >gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] Length = 508 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 84/486 (17%), Positives = 154/486 (31%), Gaps = 56/486 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 HD+ P + DSR +AP + FFA G DG +I AV++G Sbjct: 6 LNLHDIQAW----LRQAAPSAQLTS---DSRRVAPGDVFFAYVGD-ADGRSYIADAVERG 57 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A VV + +P V D+ ++A + + +A+TG+ GKT+ Sbjct: 58 AAAVVYEAAGFTWPAQIDVPHLAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSC 117 Query: 123 KEMLTIALSSIKKTYACIGSYNN-----HIGVPLTLARMPVDVDFGI------------- 164 L IALS + G P + Sbjct: 118 AYWLGIALSRLAGASTAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGR 177 Query: 165 ---FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + S +G + + + +A++T HL ++ AK ++F+ Sbjct: 178 VGALAIEASSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKH 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------QLRKWKQCSEQSWMEVQ 275 + DD LL + Y+ + D + + + + V Sbjct: 238 AVVNLDDDMGQRLLPLLAERKVPVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVD 297 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 S +V +G N+L +G++ D + A + P GR + Sbjct: 298 SPFGSGQVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALSPAPGR---MQQFGG 354 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 ++ + Y P ++ +S L Q++ G+ V G G+ + ++ Sbjct: 355 PDVPLIVID-YAHTPDALDKTLSTLRQLATQRGGQLWCVFG---CGGDRDPGKRPQMGQI 410 Query: 396 LSLYNISHVWLS-----GFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447 V L+ A+ D + + G L+ DVV Sbjct: 411 AEQA--DQVVLTSDNPRSEDPQAIIDQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVV 468 Query: 448 VV--KS 451 ++ K Sbjct: 469 LLAGKG 474 >gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella sp. MS 92-3] gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella sp. MS 92-3] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 60/453 (13%), Positives = 130/453 (28%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A++G DG +I A+ +G ++ A G + +PV Sbjct: 2 TLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L+ LA + + + + T +A + Sbjct: 62 YLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTVG 121 Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ + + + +S G ++ ++ +V T Sbjct: 122 NGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + ++ E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAHTPDA-------LEKALQAARLHCSG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E + DVV+V K Sbjct: 411 AGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 443 >gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Delftia acidovorans SPH-1] gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans SPH-1] Length = 509 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 150/481 (31%), Gaps = 47/481 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L T + +Q + G + DSR + P +AF A G DG + A+++ Sbjct: 10 LSTATEAVQWLAARLQGSGT------LQTDSRKVRPGDAFIAWPGGATDGRAHVASALER 63 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA +V V + G + + + A +A ++A+TG+ GKTT Sbjct: 64 GAMACLVEAQGVEAFGFSGEHIAALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTT 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163 T L AL+ +K + +GV R D Sbjct: 124 TAWWLAHALAQVKLQERSGCALVGTLGVGIPPAMESTGMTTPDPVRLQRAFREYADAGLA 183 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221 + S +G + R +A+ T HL ++ A A + GL+ Sbjct: 184 ACAIEASSIGIVEHRLDGTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFDWPGLQAAV 243 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + ++S A Q + +E V G S+ Sbjct: 244 VNVDDAHGARLWATLQSRKQPAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSL 303 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + +G + N+L L + L +D A+ A P GR ++ Sbjct: 304 RMHTRMVGQYNVSNLLGVLAALRCLGLTLDQAVAACVHLEPVPGRMQQIVQPGQPLVAVD 363 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P ++ A+ L + GR V G G + L + N Sbjct: 364 ----YAHTPDALDKALRALRPAAEQRRGRLWCVFG----CGGDRDATKRPLMGQAAQKNA 415 Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V ++ + + + + ++ + + DVV++ K Sbjct: 416 DCVLVTSDNPRSEVPDRIIDQILAGMQPGENLQSQADRAAAIAQAIAHASERDVVLIAGK 475 Query: 451 S 451 Sbjct: 476 G 476 >gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] Length = 497 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 82/476 (17%), Positives = 155/476 (32%), Gaps = 52/476 (10%) Query: 7 FHDLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL +A G +G + + DSR + P + F + G H+DGH FI+ ++ Sbjct: 9 LDDLKRA--GFLLGWGGDWNDLKETSRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLR 66 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 G ++ V DV A+ LA + ++A+TG+ GK+ Sbjct: 67 LGVAGFMIERPTDGLDN-----WIQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKS 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFE 166 T+ M+ LS+ IG+ H G L + G Sbjct: 122 TSSYMIRSVLSACGIKTGLIGTVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACV 181 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFL 225 + S G ++ A+ T ++P HL +EE A+ E L+ I + Sbjct: 182 MECSSHGLVQGRISGSTYDGALFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISV 241 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N D + + L A+ + ++G AD +++ + + + LQ + Sbjct: 242 NGCDPWGQKLAARFPSS-----LTWGLGDGADVRVKADRLTMKAGGSDFDLQVDGQFLGR 296 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + N+ LG S+ + + R T+I + Sbjct: 297 VALPMTGRFNVENALGAASLCIGLGCSPEAVVKGLETMPQVPGRMERINLSNGVTVIVD- 355 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + ++ ++ L ++ I+V G E ++ +L ++ V Sbjct: 356 FAHTEIALTNLLATLRPLAKR----LISVFGHGGERFAGARP---ELGKIAGQT-ADRVI 407 Query: 406 LS---------GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ A+ L + GDVVV+ Sbjct: 408 VTMDNPRNEDPAEIARAIVAGLEGGKASFSTVLSRRDAVFAALDEAERGDVVVISG 463 >gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] Length = 506 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 147/475 (30%), Gaps = 44/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + V GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 17 LAELAGQMGAAT--PERDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +PV VDD G + +LA I ITG+ GKTTT Sbjct: 75 AVLTDPTGADRAAATGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 ++ L +++ T + R + + +S Sbjct: 135 LIEGGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 194 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + IAV ++P H+ S +E+ AKA++ T +F Sbjct: 195 HALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQL-----FTPQRSKLGVVNF 249 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + + I +F + D R + G E + Sbjct: 250 DDEYGRRLVEEAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERITARSPLA 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ TL + L A A G R + + + + Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDVGQPYLAVVDYAH---- 365 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 A SVL + EG+ VLG G+ ++ + + + + V S Sbjct: 366 KTDAVESVLRALRKVTEGKLHIVLG---CGGDRDRTKRMPMGAAAARLADTAVLTSDNPR 422 Query: 409 -FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 LA+ +P V E + + GD V+V K Sbjct: 423 SEDPLAILATMLAGAAEVPSHERGEVQVFENRAAAIAAVVARARPGDTVLVAGKG 477 >gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii 3594-74] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 70/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + ++ + E+ H IG N+L+ L + L Sbjct: 242 NPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTVPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] Length = 512 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 90/489 (18%), Positives = 161/489 (32%), Gaps = 62/489 (12%) Query: 4 LWTFHDLLQ-----------AIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKG 48 + T ++ I G VP+ V +S DSR ++ FF KG Sbjct: 1 MLTLKEITDLLKENGLYKEIIIDGDWYYTVPEKAARAEVTDLSYDSRKVSDGTLFFC-KG 59 Query: 49 PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS 106 ++ +++ A+++GA + + S P V DV A+ +A Sbjct: 60 LKFNP-EYLASAIKEGATAAISELVYTDKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCP 118 Query: 107 KAT--IIAITGSVGKTTTKEMLTIALSSIK-----------KTYACIGSYNNHIGVP--- 150 +I TG+ GKTT+ L+ + H+ P Sbjct: 119 DEKLELIGFTGTKGKTTSVYFTRHILAHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESL 178 Query: 151 --LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEI 206 + + VD + +S + + + +I V I+P H+S ++ Sbjct: 179 DLFRMMKEAVDNGMKYLAMEVSSQAYKKSRVYGLHFNIGVFLNISPDHISLVEHPTFDDY 238 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQ 265 K++I + T+ LN ++ELL K+H LG K I +AD++ K Sbjct: 239 LWCKSQIIVNSD---TVILNRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGKDHG 295 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + S L + E G+ N L + + + L D + L Sbjct: 296 YFDVSTHNDNLPEVTGEFRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETKVPGR 355 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 N + Y N S+ + + P +GR I V+G G + Sbjct: 356 ----MEFLKNNAGMVACVD-YAHNYLSLSESFKFMKHEYP--DGRLIVVIGAA---GGKA 405 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV--------LALKDAL-PRSIHVHYSETMDGLFLF 436 +S D+ LS Y + S + +K+ + ++ V + Sbjct: 406 ESRRKDVGRALSEYADVAILTSEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQ 465 Query: 437 IQSSLVDGD 445 GD Sbjct: 466 AFEMAKPGD 474 >gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 21-1] gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 21-1] Length = 471 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L L Sbjct: 242 NPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus proteolyticus MRP] gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus proteolyticus MRP] Length = 491 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 74/462 (16%), Positives = 137/462 (29%), Gaps = 51/462 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P+ V G++ ++ P F A++G DGH FI A ++GA V+ + + + Sbjct: 19 PEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLGE--GLPTGVQTT 76 Query: 83 IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--- 137 +P V D AL LA ++ +TG+ GKTTT + L + Sbjct: 77 LPYLQVPDARAALADLAAELHGHPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAGLPTGLL 136 Query: 138 ------------ACIGSYNNHIGVPLTLARMPV----DVDFGIFELGMSHLGEIRFLTHL 181 ++ P + + + E S Sbjct: 137 STAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLE--ASSHALALHRVRG 194 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V A+ T + HL +E + K + + + + Sbjct: 195 VAWDAAIWTHLTREHLDFHGSVEGYFADKRRL-------IEAAPFAVLNADDPWTEQLRG 247 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + + + AD+Q K +Q V IG N L + Sbjct: 248 VAPQEVTYSAEGGAADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVANALAAMA 307 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + L A + L+ F GR + R ++D ++ + L Sbjct: 308 AAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTP-----PSLEKALQ 362 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------VLA 413 + G+ V+G G L EV ++ H + A Sbjct: 363 TLRSTTGGQLWVVIGSAG--GNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAA 420 Query: 414 LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ H ++ + + GD V++ K Sbjct: 421 MERGAREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKG 462 >gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter youngae ATCC 29220] gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter youngae ATCC 29220] Length = 471 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSY 143 + + L+ LA K ++ +TG+ GKTTT ++L + +T Sbjct: 62 YLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKTTVVVDYAHTPDA-------LEKALQAARLHCTG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E + DVV+V K Sbjct: 411 AGRAKVMEGRAEAVTNAIMQAQENDVVLVAGKG 443 >gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 69/481 (14%), Positives = 145/481 (30%), Gaps = 48/481 (9%) Query: 5 WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T +LL I +P + + GIS++S + + F AI+G DG D+I A+ K Sbjct: 1 MTLRELL----APWIKQIPFECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAK 56 Query: 64 GAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 G ++ G + +P+ + + L+ +A + +I ITG+ Sbjct: 57 GVAAILAEAKGQTKHGEIHKLHDVPIIYFNQLNKMLSAIAGHFYQQPSRFLRLIGITGTN 116 Query: 118 GKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--------- 167 GKTT +L LS + + + N G L Sbjct: 117 GKTTISYLLANWLSLLGETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVK 176 Query: 168 ----GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 +S G ++ + AV + ++ HL + + AK ++F L + I Sbjct: 177 FSIIEVSSHGLVQDRVSNLNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSELNVSKRI 236 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D L A+ + S N ++ + Sbjct: 237 INVDDTVGKNWLVHLPQAVAVTANNSI--PHNWPGYWLCARKIIHHTSGVNINFNSYWGS 294 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 N+ L ++ L + + + R G+ +I Sbjct: 295 GEIYSNLIGEFNVSNILLSLATLLVLGYSLKNLVKTSRKLQAICGRMEVFSAHGWPVVIV 354 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + A L + +G+ + G G + ++ + Sbjct: 355 DYAHTPDA----LAKALLAVKMRCQGKIWCIFG----CGGNRDKSKRPIMGAIAEEYADY 406 Query: 404 VWLSGFHVLA------LKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--K 450 + ++ + ++D I+ +++ D++++ K Sbjct: 407 IIITNDNPRWEEPQDIIEDIKCGFINGNHTNKTVILCRSLAIQHAIIHASPQDIILIAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] Length = 519 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + L+ ++ H+ + DSR + P + F A G DG + A+ + Sbjct: 16 LGSVPEALEWLRAHAPQGA-------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA +V + V + + V + D+ A LA + ++A+TG+ GKT+ Sbjct: 69 GAAACLVEREGVEAFRFGAEGVAALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTS 128 Query: 122 TKEMLTIALS-----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------------ 164 T + AL+ + C +GVP +L + + Sbjct: 129 TTWWIADALNLLAGSGLATHGGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAGFVAN 188 Query: 165 ----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + S +G +R +AV T HL +G+ AK+ +F+ Sbjct: 189 GLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDWPGLQ 248 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + D E + + A +++ + A Q R V ++ Sbjct: 249 AAVVNIDDPRGGE--LSDTLAQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAEGVQA 306 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + IG++ N+L + + L ++ A+ A + P GR + Sbjct: 307 HVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQPLVAV 366 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 Y P +++ A+ L ++ GR V G G L ++ Sbjct: 367 D----YAHTPDALEQALQALRPVAEQRGGRLWCVFG----CGGNRDRAKRPLMGRIAQQR 418 Query: 401 ISHVWLSGFHVL 412 V ++ + Sbjct: 419 ADAVIVTSDNPR 430 >gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] Length = 563 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 80/466 (17%), Positives = 151/466 (32%), Gaps = 70/466 (15%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L + G VP V G S+DSR++ P + + A+ G + G F AV+ GA Sbjct: 14 SLRALAELSGA--AGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGA 71 Query: 66 GLVVVNTDMVA---------------------------SIGSLSIPVFGVDDVLGALNKL 98 V+ + A + +P+ VDD L +L Sbjct: 72 VAVLTDAAGAAVIRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQL 131 Query: 99 AVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 A A T++ ITG+ GKTTT +L AL ++ + IG+ +G + Sbjct: 132 AAAIYGDPGADLTMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSH 191 Query: 157 P----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 D + E+ SH + + +V +A+ T ++ HL Sbjct: 192 TTPEATDVHALLAVMRERGADTCVMEV-SSHALDQHRVDGVV-YDVALFTNLSQDHLDYH 249 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 +E+ +AKA +F E++ + + DD + L ++ + Sbjct: 250 GSMEDYFAAKARLFT-PERSLSGVVCVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTS 308 Query: 261 RKWKQCS-------------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + + + + V++L+ Sbjct: 309 TGAEVDWSVVPRRGAAVDGASGQPFHLVHRSGDRSLSLASHLPGDFNVANTAIAAVALLS 368 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A ++ P G+ A + P ++ L+ + P Sbjct: 369 LGHEPARVEAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDV---ALAALRPST 425 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 GR IAVLG G + + + V ++ + + Sbjct: 426 RGRLIAVLGA----GGDRDRGKREAMGRAAARHADIVVVTDDNPRS 467 >gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 464 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 159/388 (40%), Gaps = 11/388 (2%) Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V + + I + V +V A K R + I+AITG+ GKTTTKEM+ Sbjct: 62 VIVTDRAYRPTEIPTKIIIIQVANVDEAYWKFVHFYRNQFHIPIVAITGTSGKTTTKEMI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ ++ A S N+ L + D + +FE + G++ +P I Sbjct: 122 KHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAVGSPGDVTNAGKYFKPTI 181 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT I HL+ +E AK E+ + ++ GT+ +N +D + L + Sbjct: 182 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAEDMNTKKL---DISKFNGR 238 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + F+ + + ++ K+ ++ G G H N L + + Sbjct: 239 LVKVGIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGFGQHQVYNALAAIAAAYEI 298 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A + K+ + L+D++++ S++AA+ VL+++ Sbjct: 299 GVPIPV---AANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSLEAALKVLNELGDG 355 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPRSIH 423 + IAV+G + ++G H E++ + + G H + D L + Sbjct: 356 KKK--IAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLITIGEHARIMADHAVKLGFNAP 413 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V+ + ++ +Q + + +V++K Sbjct: 414 VYTYKNSTLVYPLLQKIIDENTIVLIKG 441 >gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 497 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 74/468 (15%), Positives = 148/468 (31%), Gaps = 47/468 (10%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I PQ + +S+DSR + ++ F AIKG DG+DFI AV+K ++ T Sbjct: 13 WIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKK 72 Query: 78 IGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL- 130 G + +IP+ + ++ LA II +TG+ GKTT +++ Sbjct: 73 HGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSE 132 Query: 131 -----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRF 177 + T T + + + I + +S G ++ Sbjct: 133 LLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSHGLVQN 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234 + +I + T + HL +++ SAK F + I Y + Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQHKIKKIILNANDKYAKKWLRK 252 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L K K K + +E + + IGY Q Sbjct: 253 LSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTDVEFESSWGQGILSTCLIGYFNIQ 312 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L++ + + + I P GR +++ + +A Sbjct: 313 NLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKFDVFGKPKVIIDYAHTPDA------ 366 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410 L+ I + + + + G G L +S V ++ + Sbjct: 367 -LKKALNAIKSYYKKKIWCIFG----CGGERDQTKRPLMGSISEKIADRVIITNDNPRNE 421 Query: 411 -----VLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKS 451 + + + + + F ++++ D++ + Sbjct: 422 NQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANI--DDIIFISG 467 >gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 8802] gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802] Length = 501 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 150/474 (31%), Gaps = 46/474 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ Q V GI +S + + F + G DG F A++ GA Sbjct: 13 TIQEI-------PPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQFWTSALEAGA 65 Query: 66 GLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + A + V +D++ +LA A + +I +TG+ GKTTT Sbjct: 66 VAAIITPEAAAHFPPTPDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIGVTGTNGKTTT 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 ++ L+ + G ++ + + + Sbjct: 126 THLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAVDAGNHYCVME 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + +AV + + HL +E+ SAK+ +F +N D Sbjct: 186 VSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDYLAKRAIINLD 245 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D++ + L + +ADF + + ++ + Sbjct: 246 DAYGQRLIQ--GLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQGTIPFTSPLV 303 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L + V L D++ I L F GR +R + + Q ++D ++ Sbjct: 304 GQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQEISVIVDYAHTP 363 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L P G+ I V G G L +S ++ Sbjct: 364 DSLE-----NLLKAARPFIPGQMICVFG----CGGDRDRTKRPLMGQISAKLADVSVVTS 414 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +P ++ GD V++ K Sbjct: 415 DNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKG 468 >gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 69-1] gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 69-1] Length = 471 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 84-1] gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 182-1] gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 124-1] gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 78-1] gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 84-1] gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 182-1] gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 124-1] gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 78-1] gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 85-1] Length = 471 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 573 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 146/476 (30%), Gaps = 46/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + G V GI+ DSR++ P + + A+ G G DF A GA Sbjct: 66 LGELAARLGA---APQESGDVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAV 122 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 V+ + + +PV +D G + +LA R A + I ITG+ GKTTT Sbjct: 123 AVLTDPAGAERAAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAY 182 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++ L ++ IG+ IG + P D M G + Sbjct: 183 LVEGGLRGAGRSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242 Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +AV ++P H+ SG+E+ AKA++ T + Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQL-----FTPRRSRLGVVN 297 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F + + + +F + D R + G E + Sbjct: 298 FDDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARAPL 357 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+ TL + L A G R + + + + Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH--- 414 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 A SVL + EGR VLG G+ + + + + V S Sbjct: 415 -KTDAVESVLRSLRKVTEGRVHIVLG---CGGDRDVTKRGPMGAAAARLADTAVLTSDNP 470 Query: 409 --FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451 LA+ A+ + + GD V+V K Sbjct: 471 RSEDPLAILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKG 526 >gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] Length = 479 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 155/455 (34%), Gaps = 33/455 (7%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + V G++ DSR + P F A+ G DG +I A+ +GA V+ D A I Sbjct: 5 VIGGADPDVAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTPDSEARI 64 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---- 134 G +P+ D L ++A T++A+TG+ GKT+ E + Sbjct: 65 GGR-VPLVMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSA 123 Query: 135 -------KTYACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRP 184 + P+ L + D + G+ + S G + VR Sbjct: 124 SLGTLGLMVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDGVRI 183 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + HL ++ AK +FE + +T + DS A + Sbjct: 184 KAAAFTNLTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRRG 243 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I S+G+ A+ +L + +++ + G++ V +G A N L LG+ Sbjct: 244 HRILSYGRRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGLAI 303 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D A ALS GR +R N +D ++ + VL+ I Sbjct: 304 ATGTPDDQATAALSRLAGVRGRMERVAVLANGA-AIYVDYAHTPDALET-----VLNAIR 357 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419 PH G+ V G G + + ++ ++ A Sbjct: 358 PHTTGKLWCVFG----CGGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAAL 413 Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + S L GDV+++ K Sbjct: 414 AACPGGEEIGDRAEAIRSAVSRLGPGDVLMIAGKG 448 >gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 116-1] gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 175-1] gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 146-1] gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1827-70] gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 175-1] gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 116-1] gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 146-1] gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1827-70] gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 3431] gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli LT-68] gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia fergusonii ECD227] Length = 471 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] Length = 607 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 63/465 (13%), Positives = 131/465 (28%), Gaps = 57/465 (12%) Query: 7 FHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 + LQ + V GIS+DSR + PQ+ + A+ G G F Sbjct: 59 LREYLQGLGAQVSAQPASGVQGSESGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQF 118 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI---IAI 113 A++ GA ++ + +G +PV +++ + LA + A+ Sbjct: 119 AEAALKLGASAILTDAAGAQLLGEAPVPVLVTENLREYVGPLAALIYGSASFPATHRYAV 178 Query: 114 TGSVGKTTTKEMLTIALSS---------------IKKTYACIGSYNNHIGVPLTLARMPV 158 TG+ GKTT+ ML + I +L + Sbjct: 179 TGTNGKTTSTYMLESVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMG 238 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---- 214 + +S V+ +A T + HL +E +KA++F Sbjct: 239 QHQVRCAAMEVSSHAIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLFTPER 298 Query: 215 -----------EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 G + L A + FG A ++++ Sbjct: 299 AELAVITADDEWGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQRE 358 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 + + + + +A+ + + L+ Sbjct: 359 GLGHRFHVDNGAGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSAL 418 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 ++ ++D ++N + L + G+G+ + V G E Sbjct: 419 TPVVPGRMQLISLAPHAIVDFAHNPDG-----LTRALEAMDRPGDGKVMIVFGATGE--- 470 Query: 384 LSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIH 423 + ++ V ++ G ++ A+ Sbjct: 471 -RDQLKRPIMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQ 514 >gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2tet1] gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 483 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 147/477 (30%), Gaps = 56/477 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 3 LDQLLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + LS+ +D + LA +I ITG+ GKTT Sbjct: 63 AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTTVSC 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 ++ + IG+ + +G + + + + +S Sbjct: 119 LVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +G V+T I HL +EE +AK + F L + G +N D Sbjct: 179 SIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + S+ + AD++ + K S S ++ QGK IG Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFPCETSLIGE 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N+L +L +V + F + Y P Sbjct: 295 HNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399 ++ +L Q+ P GR I V G G L +S + Sbjct: 351 DALDNVCRILLQLLPKY-GRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405 Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + H S D D+V+V K Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455 >gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 155-74] Length = 471 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 501 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 51/470 (10%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 + G++ DSR + F AI G DG++FI AVQKGA ++ D+ Sbjct: 6 IEIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIK----DCI 61 Query: 85 VFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V D L L K +I +TG+ GKTTT ++ L K IG+ Sbjct: 62 VKKVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAGLIGT 121 Query: 143 YNNHIGVPLTLARMPVDVD--------FGIFE------LGMSHLGEIRFLTHLVRPHIAV 188 IG +++ + E L +S G H + IA+ Sbjct: 122 LFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDFDIAI 181 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLE-------KTGTIFLNYDDSFFELLKAKSHA 241 T I HL+ I + ++K ++F+ L + + + A ++ Sbjct: 182 HTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILAITYG 241 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 L K+ + + + V+++ V + IG H N L+ + Sbjct: 242 LSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYNALLAI 301 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 +L +D ++++ + + R + + + Y NP+S +A + + Sbjct: 302 STCLLLNIPIDKIVQSIKNYPAVQRRMQII-----YRDKFTVIDDYCHNPSSYEAVFNAI 356 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSG--FHVLALKDA 417 + + V G G + ++ + + NI + ++ + + A Sbjct: 357 QNLQYNN---LHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDFIDPMNSA 413 Query: 418 LPRSIHV------------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 L ++ Y + L GD++++ + S Sbjct: 414 LEEEKNICFEVFNSSAIPFQYERNLRDAIEEGIRDLRQGDILLLLGAQSM 463 >gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 495 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 142/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + + +DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPNAPERALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYNEPSDQLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT +++ + +T N +G Sbjct: 121 TTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLAGQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK +F I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHHYGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPMAELLNTAERLQPVCGRMEVFSAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALEAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADIP 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + E + DVV++ K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKG 467 >gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] Length = 515 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 152/484 (31%), Gaps = 53/484 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + V GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 17 LAELADQLG--LPAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + + +P VDD + +LAV I ITG+ GKTTT Sbjct: 75 AVLTDPSGAERVAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTTTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNN--HIGVPLTLARMPVDVDFGIFELG--------MSHLGE 174 ++ L + + T G V + + + + E M G Sbjct: 135 LVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRERGT 194 Query: 175 IRFLTHLVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + IAV T ++P H+ S +E+ AKA++F E++ Sbjct: 195 DAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFT-PERSRL 253 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD + L + + ++ + D R + G + Sbjct: 254 GVVNVDDEYGRRLAKE----AGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVIGPEDQ 309 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V N+ TL + L A A G R + + Sbjct: 310 RVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDAGQPYLAV 369 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + A SVL + EGR VLG G+ + + + + Sbjct: 370 VDYAH----KTDAVESVLRTLRRVTEGRVHVVLG---CGGDRDITKRAPMGAAAARLADT 422 Query: 403 HVWLSG----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V S LA+ + + V E + GD V+V Sbjct: 423 AVLTSDNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLV 482 Query: 450 --KS 451 K Sbjct: 483 AGKG 486 >gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 122 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 W ++++ A G + + IS D+RSI + F A+KG ++DGH+F+ A KG Sbjct: 4 WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122 A +V+ S P+ V D L AL+ +A A +IA+TGSVGK Sbjct: 64 AVAAIVSEGKYK-----SFPLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKPLQ 118 Query: 123 KEML 126 + Sbjct: 119 RICC 122 >gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 8801] gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801] Length = 501 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 46/474 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T ++ Q V G+ +S + + F + G DG F A++ GA Sbjct: 13 TIQEI-------PPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQFWTSALEAGA 65 Query: 66 GLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + A + V +D++ +LA A + +I +TG+ GKTTT Sbjct: 66 VAAIITPEAAAHFPPTPDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIGVTGTNGKTTT 125 Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 ++ L+ + G ++ + + + Sbjct: 126 THLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAVDAGNHYCVME 185 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + +AV + + HL +E+ SAK+ +F +N D Sbjct: 186 VSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDYLAKRAIINLD 245 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D++ + L + +ADF + + ++ + Sbjct: 246 DAYGQRLIQ--GLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQGTIPFTSPLV 303 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L + V L D++ I L F GR +R + + Q ++D ++ Sbjct: 304 GQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQEISVIVDYAHTP 363 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + ++L P G+ I V G G L +S ++ Sbjct: 364 DSLE-----NLLKAARPFIPGQMICVFG----CGGDRDRTKRPLMGQISAKLADVSVVTS 414 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +P ++ GD V++ K Sbjct: 415 DNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKG 468 >gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli STEC_7v] Length = 471 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 68/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV++ K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 443 >gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/Jali20/OT] gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/Jali20/OT] Length = 483 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 149/477 (31%), Gaps = 56/477 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LLQ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 3 LDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + LS+ +D + LA +I ITG+ GKTT Sbjct: 63 AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 ++ + + IG+ + +G + + + + +S Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +G V+T I HL +EE +AK + F L + G +N D Sbjct: 179 SIGMALGRVRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + S+ + AD++ + K S S ++ QG+ IG Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGE 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N+L +L +V + F + Y P Sbjct: 295 HNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399 ++ +L Q+ P +GR I V G G L +S + Sbjct: 351 DALDNVCRILLQLLPK-DGRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405 Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + H S D D+V+V K Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455 >gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 491 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 84/483 (17%), Positives = 146/483 (30%), Gaps = 52/483 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL+ H++ P V G++ID+ + P F A+ G G + AV Sbjct: 1 MKLSDLIAGQDHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60 Query: 63 KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +GA V+V+ ++ + V V DV A +A +IAITG+ GK Sbjct: 61 RGAVAVLVDEQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKK----------------TYACIGSYNNHIGVPLTLARMPVDVDFG 163 T+ M L ++ S + P + D Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 L + +G + + V T + HL + +E AK +F+G Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD ++ ++ +AD++ + S + G+ Sbjct: 239 RAVVNADDPVGAGIRKLMPGAVT----TYALDGDADYRASDLAVDASGSRFTLHHDGRKY 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G N L T+ +L + + AL GR +R + Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQIPGGTSVIVD 354 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 S + VL+ I GR I V G G + ++ + Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRADMGAIAGTHS 403 Query: 402 SHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 L+ + + D + + I DVV++ Sbjct: 404 DLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIAG 463 Query: 450 KSS 452 K S Sbjct: 464 KGS 466 >gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM 30120] gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM 30120] Length = 495 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 68/453 (15%), Positives = 142/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+KG DG +I A+ +G V+ A G + +PV Sbjct: 26 TLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAVIAEAHGEAEEGEIRFVHGVPVI 85 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 ++D+ L+ LA + ++ +TG+ GKTTT +++ + + + Sbjct: 86 YLNDLNNRLSALAGEFYHQPSSQMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTVG 145 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G E + +S G ++ ++ AV T Sbjct: 146 NGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLVQGRVAALQFDAAVFT 205 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F I D+ + L+ A + S Sbjct: 206 NLSRDHLDYHGDMANYEAAKWLLFSTHHTKTQIINADDEVGLKWLQRLPQACAVTMEDSI 265 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + +G N+L+ + + ++ Sbjct: 266 PANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFESPLMGAFNVSNLLLAMATLLMMDYP 325 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ + + P GR + + + +A L+ H +G Sbjct: 326 LEKLLATTNALMPVCGRMEVFSVTGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 378 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L + V ++ + + + Sbjct: 379 KLWCVFG----CGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEDPLDIINDIMAGILD 434 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S V DV++V K Sbjct: 435 SSRVLAIPGRPEAVTNTILQAHPDDVILVAGKG 467 >gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 487 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 83/457 (18%), Positives = 153/457 (33%), Gaps = 41/457 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 Q + I+S + P + F +G +D H ++ A++ GA V+ N L Sbjct: 14 EQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIANR-----TLHLD 68 Query: 83 IPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 IPV + +L + AV K I +TG+ GKTT L L+ + Sbjct: 69 IPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQMLNQSSTSAYIGT 128 Query: 142 SYNNHIGVPLTLARMPVD-----------VDFGIFE--LGMSHLGEIRFLTHLVRPHIAV 188 + V + L+ D V+ G+ + +S + + + + Sbjct: 129 LGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHALAQDRAGFLDLEVGI 188 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 IT I HL + AK +I + ++ G +N DD + A+ H + Sbjct: 189 ITNIGRDHLDYHRTKDAYVQAKLQIIDRIKPGGYAVINMDDPHAPAMFARCHGRVKTVSF 248 Query: 249 S--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S + + N D + S Q L + + + + M ++ Sbjct: 249 SIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMPFLFNVENMLAMACALH 308 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A + G+ LN G L+D ++N + + + S I Sbjct: 309 AQGWTLDQIASGLTTIIPPDGRAQFQTLNNGATGLVDYAHNLDGLA-----RLFSDIPNQ 363 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSI 422 + V+G + + + + + E+ + Y+ V+ G + AL I Sbjct: 364 TFRHTLTVVGVTGDRIQDAAA----IGELCARYSDLVVFTMDNPLGIDQADIFRALTSRI 419 Query: 423 H-----VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 V + GD++VV K S Sbjct: 420 ESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGS 456 >gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli EPECa14] Length = 471 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] Length = 483 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 156/469 (33%), Gaps = 44/469 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q + + + + G++ DSR + AFFA+ G DG + A +GA +VV Sbjct: 3 LSQLLGEAATAGLGDLDIAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVV 62 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 +S+P+ V DV +L A R + A+TG+ GK++ + L Sbjct: 63 APRA-----AEVSLPLVVVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQI 117 Query: 130 LSS------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEI 175 + + G + G+ + S LG Sbjct: 118 WIALGREAASLGTIGLIDKSGAHYGALTTPGPVALHQTLDELCAGGVTHLAMEASSLGID 177 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + VR + T + HL + +EE +AK +F+ L +TG + DS Sbjct: 178 QRRLDGVRLCVGAFTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAER 237 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 A A ++ G A +L + + + ++ G++ +V G N Sbjct: 238 VAAVCAARGLALFDVGAKGRA-IELLSVAPSALATRLTLRHAGETYDVDLPLAGGFQISN 296 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L++ G+ AL+ GR + F Y P ++ Sbjct: 297 ALVSAGMAIASGEAPGRVFAALASLRGAPGRLELIGQRDGAPVFVD----YAHKPDALDK 352 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413 ++ +++ +GR + V G G L ++ V ++ + + Sbjct: 353 VLATARELA---KGRLVVVFGA----GGDRDKGKRPLMGEIAARAADIVVVTDDNPRSEE 405 Query: 414 ---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S +H S L DGD ++V K Sbjct: 406 PAMIRAAIVAAARAAGSAQIHEIGDRRAAIETAISWLRDGDALIVAGKG 454 >gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Acidovorax ebreus TPSY] gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY] Length = 501 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 87/486 (17%), Positives = 153/486 (31%), Gaps = 51/486 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN L T L +A+ + V G + DSR I P + F A G DG + Sbjct: 1 MNALHTLTTLQEAV------DWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGD 54 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 AV +GA +V + V + + + A +A + ++A+TG+ Sbjct: 55 AVARGAAACLVECEGVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTN 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI-------- 164 GKT+T L AL+ + K + +GVP L + + Sbjct: 115 GKTSTAWWLADALNQLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQ 174 Query: 165 --------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + S +G R H+A+ T HL G+ AK +F+ Sbjct: 175 FAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDW 234 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 ++ D L ++S A Q + V Sbjct: 235 PGLRASVVNVDDPQGAALHAE--LQGSDLDLWSVSLQGPARLQAKHIVHTGAGLAFTVAE 292 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + + IG + N+L + + L + A++A + P GR ++ A Sbjct: 293 GAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQP 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 Y P ++ A++ L ++ GR V G G + L + Sbjct: 353 LVAVD----YAHTPDALHQALAALKPVAAQRGGRLWCVFG----CGGNRDAGKRPLMGAV 404 Query: 397 SLYNISHVWLS-----GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + V ++ G ++ + V + DVV Sbjct: 405 AQREADEVIVTSDNPRGEEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVV 464 Query: 448 VV--KS 451 ++ K Sbjct: 465 LIAGKG 470 >gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia odorifera 4Rx13] gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia odorifera 4Rx13] Length = 471 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 71/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G V+ + A G++ +PV Sbjct: 2 TLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA + + ++ +TG+ GKTTT ++L + + Sbjct: 62 YLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETGAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + +S G ++ + AV T Sbjct: 122 NGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F G E I D+ L A+ + + Sbjct: 182 NLSRDHLDYHGDMANYEAAKWSLFAGHEVGQAIINADDEVGQRWLSKLPDAVAVTMQDNL 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + E+ +G N+L+ L + L Sbjct: 242 QLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSLGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 +D ++ + P GR + + + +A L H +G Sbjct: 302 LDKLVETGNQLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALEAARLHCQG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + DVV+V K Sbjct: 411 AGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKG 443 >gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70] gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70s] gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D(s)2923] gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis Sweden2] gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/150] gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/11023] Length = 483 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 149/477 (31%), Gaps = 56/477 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ I G V V ++ DSR + + F A +G +G+D+ AV GA Sbjct: 3 LDQLLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + LS+ +D + LA +I ITG+ GKTT Sbjct: 63 AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 ++ + + IG+ + +G + + + + +S Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +G V+T I HL +EE +AK + F L + G +N D Sbjct: 179 SIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + S+ + AD++ + K S S ++ QGK IG Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFLCETSLIGE 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N+L +L +V + F + Y P Sbjct: 295 HNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399 ++ +L Q+ P +GR I V G G L +S + Sbjct: 351 DALDNVCRILLQLLPK-DGRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405 Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + H S D D+V+V K Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455 >gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 391 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 127/381 (33%), Gaps = 41/381 (10%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAVQKGAGLVVVNTDMV 75 + G+ +DSR I F + G DG H F+ AV+ GA ++V D+ Sbjct: 7 GDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDV- 63 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 ++ IP V D A+ +A +K +I ITG+ GKTTT +L LS Sbjct: 64 ----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDY 119 Query: 134 KKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELGMSHLGEIRF 177 +G+ +G + D+ + E+ L R Sbjct: 120 GYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERV 179 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYDDSFFELL 235 + IAV T + HL +E K+ G + + + Sbjct: 180 KGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPS 237 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + ++G AD Q + + V +EV + +G N Sbjct: 238 VEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYN 297 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 L + + + + +LS EGR + + + +A Sbjct: 298 ALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDA------- 350 Query: 356 AISVLSQISPHGEGRRIAVLG 376 +VLS I +G+ I V G Sbjct: 351 LENVLSTIREFAKGKIITVFG 371 >gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] Length = 494 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 145/475 (30%), Gaps = 42/475 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + I+ + V I+ DSR+ F A KG D H F + +G Sbjct: 1 MNASTLFEKIRVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122 ++VV + V + L + LA + T +TG+ GKT+ Sbjct: 61 CQIIVV---KSKQEVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + + K + + + + + Sbjct: 118 ATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + ++ I+++G +A F+ + + E+ + V + Sbjct: 238 LNNDDAFSEYLASVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYV 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N++ + V +T ++A+ P EGR + L + + Sbjct: 298 GKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLIIDYAHTADG 357 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 ++ + P + + I ++G M GE + ++ V +V + Sbjct: 358 -------MNKLIDAVKPFVKRKLIFLVG-MA--GERDLTKTPEMGTVACRA--DYVIFTP 405 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + L +V E D VV+ +S Sbjct: 406 DNPANDDPKMLTSELAKGATHDNYVE-FEDRAEGIRHAIEVAEPEDTVVL-ASKG 458 >gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 200-1] gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 200-1] Length = 471 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSSVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E + DVV+V K Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda ATCC 23685] gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda ATCC 23685] Length = 495 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 72/474 (15%), Positives = 149/474 (31%), Gaps = 45/474 (9%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+A+ + P+ + +++DSR A + F A+ G DG FI A+ +G ++ Sbjct: 6 LRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAIIA 65 Query: 71 NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 D VA G +PV + + L+ LA + +I +TG+ GKTTT + Sbjct: 66 EADGVAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTTTQ 125 Query: 125 MLTIALS---------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 +L + + Y + + + V L + + + + + Sbjct: 126 LLAQWAQLLGERGAVMGTVGNGLLGQVYPSENTTGSAVDVQHMLRNLADEGATLVA-MEV 184 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G ++ + +V T ++ HL + + AK +F I D+ Sbjct: 185 SSHGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFSTHHSGEKIINADDE 244 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 L A+ + + ++ + + + +H + Sbjct: 245 VGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHSRLM 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNA 348 + L+ + A+ A+S P GR + ++ A + +A Sbjct: 305 GEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGKPTVVVDYAHTPDA 364 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L H +G+ + G G + L ++ V ++ Sbjct: 365 -------LEKALLAARLHCQGQLWCLFG----CGGDRDTGKRPLMGAIAEQYADRVVVTD 413 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + V DV++V K Sbjct: 414 DNPRSEEPRTIINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKG 467 >gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] Length = 498 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 74/451 (16%), Positives = 138/451 (30%), Gaps = 35/451 (7%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 I+ DSR P F A G DG F+ AV GA ++ +L++P FGV Sbjct: 20 ITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDGDGFCAPALAVPGFGVR 79 Query: 90 DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 + LA R + +TG+ GKTT +ML AL + + +G+ Sbjct: 80 GLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVGTLGCGF 139 Query: 148 G-------------VPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + L + + +S +G + + + +A+ T ++ Sbjct: 140 PDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVAIFTNLS 199 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E A+AKA +FE + +N DD + L + G I + Sbjct: 200 RDHLDYHGTMEAYAAAKARLFER-PELSACVINIDDPWGLALARRLVVEGRAVIACTLYA 258 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 NAD +++ ++ + + + + + Sbjct: 259 ANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAVAGALLAR 318 Query: 314 IKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 A P R + ++ + Y +P ++ + L G Sbjct: 319 GIAFDELPPVLGRLAPPQGRMQLVGGVCEPLVVID-YAHSPDALAKVLEALRGTVHSRRG 377 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD--ALPRSI 422 R + V G G + ++ V ++ + + A Sbjct: 378 RLVCVFG----CGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAGAGA 433 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 DVV++ K Sbjct: 434 AAECVVDRAQAITRAVGEARADDVVLIAGKG 464 >gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 506 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 89/458 (19%), Positives = 150/458 (32%), Gaps = 48/458 (10%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGSLSIPVF 86 + DSR I P E F A+ G H G D+I A+ KGA VV D+VA Sbjct: 33 VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAPASARDLVAPAVEKRALAV 92 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 D+ AL LA A + ++ ITG+ GKTTT ++ L++ +G+ N Sbjct: 93 YHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVLGTVN 152 Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190 + A + + I E + +S ++ + AV+T Sbjct: 153 YRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVLT 212 Query: 191 TIAPAHLSNFSGIEEIASAKAE-IFEGLEKTGTIFLNYDDSFFELLKA-----KSHALGI 244 + HL +E AK L +N++D + L + +G Sbjct: 213 NVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIGYGIGD 272 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ + Q R + +E +GKS V IG A N+L + Sbjct: 273 SSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLLAAQAVGL 332 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + G+ R +QG +D ++ + +V + Sbjct: 333 QLGLNCKDMCV---LKDFPGVPGRLERVINDQGLDIFVDYAHTPDALE-----NVQHTLK 384 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415 R I V G G L L+ + + + Sbjct: 385 SLDFKRLITVFG----CGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMDDAR 440 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L R+ V + + GDV+++ K Sbjct: 441 PGLARAAVVLEHPDRQTAITMAVAGMQPGDVLLIAGKG 478 >gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 11379] gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] Length = 522 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 144/476 (30%), Gaps = 46/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + G V GI+ DSR++ P + + A+ G G DF A GA Sbjct: 17 LGELADRLGVETAGSGD---VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAV 73 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 V+ + + +PV ++ + +LA R + I ITG+ GKTTT Sbjct: 74 AVLTDPTGAERAAATGLPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAY 133 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++ L + + IG+ IG + P D M G + Sbjct: 134 LVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 193 Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +AV ++P H+ SG+E+ AKA++F + D+ Sbjct: 194 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNFDDEY 253 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L+ + +F + D G E + Sbjct: 254 GRRLITE-----SGVPVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 308 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+ TL + L A G R + + + + Sbjct: 309 PGPFNVANTLAAIVTLAVAGVAPQIAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH--- 365 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 A SVL + EG+ VLG G+ + + + + V S Sbjct: 366 -KTDAVESVLRSLRKVTEGKVHIVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSDNP 421 Query: 409 --FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451 LA+ A+ + + GD V+V K Sbjct: 422 RSEDPLAILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKG 477 >gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] Length = 483 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 82/478 (17%), Positives = 156/478 (32%), Gaps = 56/478 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++LL + + G++ DSR + P F I+G DGHD+ + A + G Sbjct: 1 MRLYELLDGLDA--ARPDRDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ + D A + + ++ +TG+ GKTT Sbjct: 59 AAAILCERAIGLENE------IVCHDTHYAYGIVCGNWYGNPARRLRLVGVTGTNGKTTV 112 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L S IG+ +N IG + ++ + E Sbjct: 113 SYMVKHILESAGHQTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVME 172 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH + + L +R T + HL +E AK ++F +N Sbjct: 173 -CSSHALDQQRL-AGLRFASVGFTNLTQDHLDYHGDMESYYHAKKKLF---SMCDAAAVN 227 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD++ E L A+ + T +S S ADF + + + S + +G V Sbjct: 228 MDDAYGERLAAEVRHICPVTTFST-VSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLP 286 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N + + L ++ A + L+ GR + + Sbjct: 287 IPGDFSVANAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIEVLPTGTDYVVIRDYA--- 343 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 S +++ + GR + + G G ++ +AE+++ + V L Sbjct: 344 ----HSPDGLEKIITTMKKFARGRVVTLFG---CAGNRDRTKRKKMAEIVARLS-DFVIL 395 Query: 407 S------GFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++DA P + DV+++ K Sbjct: 396 TSDNPRDEDEMQIIEDAKPGLLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKG 453 >gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM 506] gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM 506] Length = 495 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 90/472 (19%), Positives = 150/472 (31%), Gaps = 42/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T +L+ P V ++DSR + FFA+ G DG F AV +G Sbjct: 15 LTLRELVGE-DADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARG 73 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 VV + S+ V + A+ A A + TI A+TG+ GKT+ Sbjct: 74 VLAVVAEAERPPWFDP-SVSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVAA 132 Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVPLT---LARMPVDVDFGIFELG--MS 170 + + G+ + P + + G+ L S Sbjct: 133 FARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLEAS 192 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ VR T ++ HL +E AK +F L G + DS Sbjct: 193 SHGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVDS 252 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 A+ A + G A L +EV+ G+ + +G Sbjct: 253 TEGSHVAQVAADHELNVLGIG-VAGAGISLLARHDEGLGQLLEVEADGRRFTLRLPLVGA 311 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N L+ G+V + A A+ AL GR + G F ++ + Sbjct: 312 FQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKDGAGVFVDY--AHKPDA 369 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + + L + P+ GR I V G G + ++ V ++ + Sbjct: 370 LA-----NALDALRPYATGRLIVVFG----CGGDRDRGKRPIMGAIAAEKADVVIVTDDN 420 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ +A P + + GDVV++ K Sbjct: 421 PRSEDPAFIRAAILEAAPEAQEI---GDRAEAIAAAIGMAKSGDVVLIAGKG 469 >gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri 2930-71] Length = 471 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 45-1] gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 185-1] gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 185-1] gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 45-1] gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 153-1] Length = 471 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEPSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E + DVV+V K Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] Length = 486 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 95/474 (20%), Positives = 172/474 (36%), Gaps = 44/474 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + +L++A Q + V+ ++ DSR IAP + FFA+ G DGH +I AV Sbjct: 1 MKQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA VV + + S+ V D A+ +A A + ++ ITG+ GKTT Sbjct: 61 GAAAVVCQR--LPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNGKTT 118 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167 T +L + I + I + V+ + Sbjct: 119 TVTLLYDLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEYCFM 178 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ + + + I HL E AK F+ L K +N Sbjct: 179 EVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAKKLFFDNLPKEAFALINI 238 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD ++ + A T+ + ADF+ + + + ++L+ EV H Sbjct: 239 DDRNGRVMVQNTRA----TVKTLSLQSMADFRCKILETHPDG----MELRIDGREVWVHF 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G A N+L +L AD + ++ +S HP GR + R A T Y Sbjct: 291 LGRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAADG----TTAIVDYA 346 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + + +I G+++ VL G+ ++ ++A++ Y + + S Sbjct: 347 HTPDALEKVLQTVEEIR--RPGQQLFVLCGCG--GDRDKTKRPEMAQIAVKYATTAILTS 402 Query: 408 G----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D L GD++++ K Sbjct: 403 DNPRHEDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKG 456 >gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 512 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 62/490 (12%), Positives = 159/490 (32%), Gaps = 49/490 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + +S+DSR + AF A+KG DG+ +I + K Sbjct: 1 MKRINQILKFLDIQTLSQN-NFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAK 59 Query: 64 GAGLVVVNT-DMVASIGSLSIP------VFGVDDVLGALNKLAVAARL-RSKATIIAITG 115 G L++ + +SI + S+ +F V+++ L+ LA + II ITG Sbjct: 60 GTKLILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITG 119 Query: 116 SVGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVD 161 + GKT+ + + ++ + + Sbjct: 120 TNGKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYYKNYQ 179 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+ S + T + IAV + ++ HL ++ AKA++F+ Sbjct: 180 NLVMEV--SSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQFRSLKK 237 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + D+ +L + + + + + + + + + ++ ++ KS+ Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSI 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E + +++Q + T + ++ +L+ R + Sbjct: 298 ENMQTSFDLYISQKYMGTYQTSLVGEFNLMNLGLSLAALDDSSTREQLLENISKLKPVKG 357 Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 E + L + + + G G + + Sbjct: 358 RMEVIALVNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFG----CGGNRDTTKRPI 413 Query: 393 AEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 ++ S + ++ + +K + ++ + + + Sbjct: 414 MAQIAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFIDSREEAIKYTIENSKA 473 Query: 444 GDVVVV--KS 451 DV+++ K Sbjct: 474 NDVILLAGKG 483 >gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] Length = 476 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 75/466 (16%), Positives = 147/466 (31%), Gaps = 58/466 (12%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G + + G+ ++++ P + F KG G F+ A+ +GA +V + I Sbjct: 3 GGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPII 62 Query: 80 SLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135 IP V + L KLA ++IAITG+ GKTT ++ L+++ K Sbjct: 63 DKEIPFVWVPNTALFLSYASAKLAA--FPAEALSVIAITGTNGKTTVSHFVSQLLNALHK 120 Query: 136 TYACIGSYNNHIG-------------------VPLTLARMPVDVDFGIFELGMSHLGEIR 176 A IG+ ++ P+ + V + E S +G + Sbjct: 121 KAAVIGTIGFYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLE--ASSMGLQQ 178 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 V ++ HL + G+E AK + + +K + + Sbjct: 179 HRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKKLVLNGDDNFCRSVGIYD 238 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K SFG + D ++ + ++ + +Q V +G + QN Sbjct: 239 KK-------KSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNT 291 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + L V L +D I+ + EGR ++ + + Y +++A Sbjct: 292 VAALMAVWRLGIPIDDIIEHMWSLKLPEGRLEKIDNPVGIDVYVD----YAHTAEALQAV 347 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413 + V G ++ ++L+ + Sbjct: 348 LQTFD-----RSKTIYLVFS----CGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDP 398 Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + GD+V+V K Sbjct: 399 IIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKG 444 >gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Heliobacterium modesticaldum Ice1] gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Heliobacterium modesticaldum Ice1] Length = 544 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 88/489 (17%), Positives = 151/489 (30%), Gaps = 67/489 (13%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L A + ++G++ DSR + P FF + G DGH F AV +GA +V Sbjct: 44 LAVAAGEKLLFG---QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALV 100 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLT 127 V + V ++ + A + ++ + TG+ GKTTT ++ Sbjct: 101 VER-----YVDVDALQIRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVE 155 Query: 128 IALSSIKKTYACIGSYNNHIG---VPLTLA-------------RMPVDVDFGIFELGMSH 171 L + + IG+ N +G P D + E+ Sbjct: 156 AILVAQGRRVGLIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHA 215 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 L ++R L V +A+ T + HL +E AK +F L Sbjct: 216 LDQLRVL--GVDFDLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPG 273 Query: 232 FELLKAK-------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 A + ++G +A + R W Sbjct: 274 SAPEATTLQGVPKRAIINADDPNAGFFIAASAAPVITYGIEADAMIKGRDWAVTPHGLTC 333 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 +V G + + G N L + D + AL GR R Sbjct: 334 DVLYPGGEVRLNLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGR--FERI 391 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 L Q F ++D ++ + +VL GR I V G G+ ++ + Sbjct: 392 DLGQPFSVIVDYAHTPDGLE-----NVLVTARALARGRVITVFG---CGGDRDRTKRPKM 443 Query: 393 AEVLSLYNISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDG 444 V++ + + S + + L + VH S G Sbjct: 444 GAVVARLSDVAIVTSDNPRTEDPRRIIEDILPGLADAGDVHVEPDRSSAIALALSLAQPG 503 Query: 445 DVVVV--KS 451 D+V++ K Sbjct: 504 DLVMIAGKG 512 >gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 16-3] gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli RN587/1] gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 60-1] Length = 471 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E + DVV+V K Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum WAL-14163] gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum WAL-14163] Length = 487 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 72/469 (15%), Positives = 146/469 (31%), Gaps = 43/469 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + L+ ++ + V+ + DSR A F ++G + D H FI +QKG Sbjct: 1 MKLREWLKEMEYELLQGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122 A ++V + I V V + AL+ L A K T I +TG+ GKTTT Sbjct: 61 AKVLVTEEAV---TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTIGVTGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L + + IG+ IG + + + E Sbjct: 118 TYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKMVEQGCRYMVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S + + ++ I+ H+ + EE K + + Sbjct: 178 V--SSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLLLQNSRVCLVNR 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + I +F +ADF+ K E ++ + + + Sbjct: 236 DDGHY-------REIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEGDYES 288 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + N+ + + + + + ++ R T+I + Sbjct: 289 RLRVNVPGLFNVYNAMAAAGVCSCLGLS-KERVAHALEHMQVDGRMEIVYKSAKCTVIVD 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401 + + S+L + + R + V G + ++ L+ +I Sbjct: 348 YAHNAVS----MESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITA 403 Query: 402 --SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 S + + +K L R + S +GD++ Sbjct: 404 DNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQEGDII 452 >gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia proteamaculans 568] gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans 568] Length = 495 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 144/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG FI A+ +G Sbjct: 5 NLRDLL----APWVPTAPGRALREMTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 V+ + A G++ +PV + + L+ LA + ++ +TG+ GK Sbjct: 61 AAVIAEAEGQAEDGAITEMHGVPVIYLSQLNQRLSALAGRFYHEPAERLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G Sbjct: 121 TTTTQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELVDQGATLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + AV T ++ HL + +AK +F G E I Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAGHEVGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + E+ Sbjct: 241 ADDEVGQRWLSQLPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + + + P GR + + Sbjct: 301 SRLMGAFNVSNLLLALATLLSLGYPLAKLVATGNQLQPVCGRMEVFNAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALEAARLHCLGQLWCVFG----CGGDRDKGKRPLMGGIAEQFADRV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + L + + DVV+V K Sbjct: 410 VVTDDNPRTEEPQAIIADILTGLLDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKG 467 >gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UM146] gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 110-3] Length = 471 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E + DVV+V K Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia pyrifoliae DSM 12163] Length = 495 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 135/479 (28%), Gaps = 49/479 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F AIKG DG FI A+ +G Sbjct: 5 NLRDLL----APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A G + +PV + + L+ LA + + I + Sbjct: 61 AAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ L+ + Sbjct: 121 TTTTQLLAQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + A T ++ HL + A + + G + Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAII 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEV 283 N DD K T+ + + L+ K + + + Sbjct: 240 NADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNI 299 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N+L+ L + L +D S P GR + + Sbjct: 300 DSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKPTVVVDYA 359 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A L+ H +GR + G G L ++ Sbjct: 360 HTPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADV 408 Query: 404 VWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + L + GD+V+V K Sbjct: 409 VVITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467 >gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-671] Length = 472 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ H +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + H E + DVV+V K Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443 >gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] Length = 581 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 64/451 (14%), Positives = 131/451 (29%), Gaps = 49/451 (10%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 +QG G V GIS+DSR + PQ+ + A+ G G F A++ GA ++ Sbjct: 49 ASGVQGSESG--ESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILT 106 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI---IAITGSVGKTTTKEMLT 127 + +G +PV +++ + LA + A+TG+ GKTT+ ML Sbjct: 107 DAAGAQLLGEAPVPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLE 166 Query: 128 IALSS---------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172 + I +L + + +S Sbjct: 167 SVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSH 226 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---------------EGL 217 V+ +A T + HL +E +KA++F G Sbjct: 227 AIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLFTPERAELAVITADDEWGE 286 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + L A + FG A ++++ + Sbjct: 287 KMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGVGE 346 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + + + +A+ + + L+ ++ Sbjct: 347 SVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLA 406 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++D ++N + L + G+G+ + V G E + ++ Sbjct: 407 PHAIVDFAHNPDG-----LTRALEAMDRPGDGKVMIVFGATGE----RDQLKRPIMGAIA 457 Query: 398 LYNISHVWLS-----GFHVLALKDALPRSIH 423 V ++ G ++ A+ Sbjct: 458 AQYADIVVVTDDDPHGEAPEPIRAAVEEGAQ 488 >gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 503 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 79/481 (16%), Positives = 146/481 (30%), Gaps = 48/481 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H+L +A+ H + ++ IS DSR I+ FF + G DG F A+ GA Sbjct: 5 LHELFKAVGIHRQIVGKDLIIDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAV 64 Query: 67 LVVV-NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATI-------------- 110 V+ S VF V D + + ++A R + I Sbjct: 65 AAVIGEEAAQKDPPSNEDMVFVVSDPVAHWMGEMASVFWKRPSSQIDLIGVTGTNGKTTT 124 Query: 111 -IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFE 166 I ++ L L + ++ + + G + G+ E Sbjct: 125 TYLIEHLCKQSGITSALFGTLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGVME 184 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223 +S + AV T + HL +E +KA +F+ +K Sbjct: 185 --ISSHALDQRRVAGCSFSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCS 242 Query: 224 FLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD + L + + + S + L ++ + Sbjct: 243 VVNIDDPWGLRLSKQLNKSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQG 302 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V IG NML +GI+ + + ++ F GR ++ + L Sbjct: 303 PFVSSLIGRFNLMNMLEAVGILIQHGVSLQELLPSIKSFSGVPGRMEQIK-VEGDLPVVL 361 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + + L + G GR V G G L ++ Sbjct: 362 VDYAHTPDG-----LKNALIALRSFGSGRLFCVFG----CGGDRDRSKRPLMGAIASKFA 412 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 HV L+ + + + + + GD+V++ K Sbjct: 413 DHVTLTSDNPRTEDPQQILNDVLPGIATETELIIEIDRANAIQMAIMKALPGDIVLIAGK 472 Query: 451 S 451 Sbjct: 473 G 473 >gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia sp. Ejp617] Length = 495 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 73/479 (15%), Positives = 136/479 (28%), Gaps = 49/479 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P+ + +++DSR A + F AIKG DG FI A+ +G Sbjct: 5 NLRDLL----APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A G + +PV + + L+ LA + + I + Sbjct: 61 AAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGK 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165 T +A + G+ LA + Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ + A T ++ HL + A + + G + Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAII 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEV 283 N DD K T+ + + L+ K + + ++ Sbjct: 240 NADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDI 299 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N+L+ L + L +D S P GR + + Sbjct: 300 DSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKPTVVVDYA 359 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A L+ H +GR + G G L ++ Sbjct: 360 HTPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADV 408 Query: 404 VWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + L + GD+V+V K Sbjct: 409 VVITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467 >gi|213419637|ref|ZP_03352703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 303 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 14/315 (4%) Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204 N IGVP+TL R+ D D+ + ELG +H GEI + L RP A++ +A AHL F + Sbjct: 1 NDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLA 60 Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 +A AK EI+ GL + G +N D++ + ++ + + N+DF Sbjct: 61 GVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIGDRQVWR--FSPNAANSDFTAANIH 118 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 S + +Q S++V+ G H N L + + A + L+ Sbjct: 119 VTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVP 178 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + + NQ ++D++YNAN SM AA+ VLS++ G R+ V+GDM E+G Sbjct: 179 GRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAE 231 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 S++ H+ + E I V +G + A S + L + + L + Sbjct: 232 SEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVGEHFADKAALIARLHALLQEQ 288 Query: 445 --DVVVVKSSNSCGF 457 ++VK S S Sbjct: 289 PMMTILVKGSRSAAM 303 >gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 471 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ AS G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++A+TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK ++ I D+ L + A+ + Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E D DVV++ K Sbjct: 411 AGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 443 >gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardioides sp. JS614] gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardioides sp. JS614] Length = 504 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 80/476 (16%), Positives = 149/476 (31%), Gaps = 40/476 (8%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL T + G V+GIS+ S+ I P + + A+ G G +F A+ Sbjct: 14 TPLAT---VAAWAGAELRGNPAGLEVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDAL 70 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 GA V + A G P VD L +L+ ++ +TG+ GK Sbjct: 71 AAGAVAVFTDEAG-ADRGPAGAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGK 129 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIF 165 TTT +L L A +G+ I + + + D Sbjct: 130 TTTTRLLEAGLQQAGVPAAVVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRAC 189 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + V +AV + HL +E+ +AKA +F + Sbjct: 190 AMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHRDLEDYYAAKASLFTPERARFALVN 249 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D L + + + ++ ++ AD++ + + S V Sbjct: 250 VDDAHGRRLAEEATVPVRTFSMGRGDDAQRADWRAVDVRLRATGSEFVVVAPDGRRIPA- 308 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + A +D A+ A + G+ R Q F ++D + Sbjct: 309 GCALPGDFNVANTLAAVAAAAEAGLDPAVVAAGIAAAGGVPGRLERVDAGQDFLVVVDYA 368 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + + + P EGR I VLG G + ++ + Sbjct: 369 HKPDAVEA-----AIRTLRPLTEGRVIVVLGA----GGDRDPGKRPIMAGIAARLADLLV 419 Query: 406 LSG-----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ A++ A+ + GD+V++ K Sbjct: 420 VTDDNPRTEDPAAIRAAMLAGVVTGQAIEVGGRRAAIREALRRAGPGDIVLIAGKG 475 >gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leptospirillum ferrodiazotrophum] Length = 512 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 153/474 (32%), Gaps = 56/474 (11%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQKGAGLVVVNTDM 74 G +P+ +GIS DSR ++P + F DG F+ A+ KGA L+V + Sbjct: 24 LEGDLPERL-SGISDDSRKVSPGDLFL----LRMDGPLQEKFLDEAIAKGAALLVASRRH 78 Query: 75 VASIGS------LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126 + S+ +PV V+++ A +A A ++ +TG+ GKTT+ ++ Sbjct: 79 LPSVLERRQVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNGKTTSSFLV 138 Query: 127 TIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHL 172 L IG+ +G R ++ + +S Sbjct: 139 RSMLDRSGLRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSH 198 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDD 229 + T + HL E+ +AKA + + +N DD Sbjct: 199 ALSQDRVAGTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSLPPAVINADD 258 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + +L + G + + ++G S+ + + + ++G+ + V G Sbjct: 259 PYGRILAEQIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPG 318 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 QN++ +G L + + GR +R + +A Sbjct: 319 DFNLQNIMGAVGCALALGISPEAVEAGIQSLPGVPGRFERANPGGKFAVIVDYAHTDDA- 377 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 ++LS + P GR I V G G ++ V ++ Sbjct: 378 ------LKNILSALRPLTPGRVITVFG----CGGDRDRGKRPRMGKVAGELSDIVVVTSD 427 Query: 409 ----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + +++ S GD V++ K Sbjct: 428 NPRTEDPEFIIDEIEPGLNMTGRSYLREVDRRTAIARALSLAQPGDAVLIAGKG 481 >gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 513 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 66/498 (13%), Positives = 156/498 (31%), Gaps = 65/498 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + +S+DSR + AF A+KG DG+ +I + + K Sbjct: 1 MKRINQILKFLDIQTLSQN-NFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAK 59 Query: 64 GAGLVVVNT-DMVASIGSLSIP------VFGVDDVLGALNKLAVAARL-RSKATIIAITG 115 G L++ + +SI + S+ +F V+++ L+ LA + II ITG Sbjct: 60 GTKLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITG 119 Query: 116 SVGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVD 161 + GKT+ + + ++ + + Sbjct: 120 TNGKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQ 179 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--- 218 + E+ S + T + IAV + ++ HL ++ AKA++F+ Sbjct: 180 NLVMEV--SSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQFKNLKK 237 Query: 219 --------------KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 + E + S K + K Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSI 297 Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 + + S+ Q +G N+ ++L ++ D ++ +S P + Sbjct: 298 ENMQTSFDLYISQKHIGTYQTSLVGEFNLMNLGLSL-AALDDSSTRDQLLENISKLKPVK 356 Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384 GR + + +A L + + + G G Sbjct: 357 GRMEVIALVNGAKIIIDYAHTPDA-------LEKALQTLVNYHPNNLWCIFG----CGGN 405 Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFL 435 + + ++ + + ++ + +K ++ ++ + Sbjct: 406 RDTTKRPIMAQIAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFIDSREKAIK 465 Query: 436 FIQSSLVDGDVVVV--KS 451 + + DV+++ K Sbjct: 466 YTIENSKANDVILLAGKG 483 >gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-134-V-Col7a] Length = 494 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 76/483 (15%), Positives = 141/483 (29%), Gaps = 51/483 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T D++ + + + I+ DSR++ P F A+ G DGH++I AV Sbjct: 1 MKTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYIDKAVAA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 GA V+V+ + + V V D A+ + ++ +TG+ GKTT Sbjct: 61 GAVAVIVSKPV---TVPNDVCVITVSDTRQAMMACVPYFFDYPANRMRMVGVTGTNGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 T M+ L + IG+ + IG T + + + H + + Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIG--DTSYPIHNTTPDVVDLQHILHQMVQENVEYC 175 Query: 182 ----------------VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223 V AV T + HL E A K Sbjct: 176 VMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEKD 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + + ++ ++ S V +G+S V Sbjct: 236 NKGAVINIDDSYGHRVMEKTTAPTITYSTLGKGTLNASDVHMSTKNSQYTVNYKGESYPV 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + G N L +G ++ AL F GR + + Sbjct: 296 SMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELIEEGQDFAVVVDYA 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + ++L E R I V G G + + ++ Sbjct: 356 HTPDG-------LQNILETAKAIKENRIIIVFG----CGGDRDATKRPIMGRIAAEYGDK 404 Query: 404 VWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 ++++ + +K+AL GD+V++ Sbjct: 405 IYVTSDNPRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIA 464 Query: 450 -KS 451 K Sbjct: 465 GKG 467 >gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702] gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702] Length = 734 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 76/461 (16%), Positives = 160/461 (34%), Gaps = 32/461 (6%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60 T L + + + + + I P A+FA A Sbjct: 295 TVGKLCEILNAEL-RNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVTA 342 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 +KGA +++ + IP V ++ AL++ AV + +A+ S K Sbjct: 343 FEKGAAVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKI 396 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 M+ LSS +T I NN+ + + + + + + G + ++ Sbjct: 397 NPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTETAVINVSCVNGGNVERVSQ 456 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +A++T+ + E+ K ++ G+ ++G + +N DD + Sbjct: 457 TANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQ 516 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + ++ AD+ + + ++ + + + H L T Sbjct: 517 DIITIGV----DNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATF 572 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + I+ I A+ + P G N+ +I + N S+ AA+ L Sbjct: 573 ALGEIMGIPPKQIIPAIEKYRPSTGLTT----VRNERGIYVISDFENEAVESVGAALKEL 628 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419 + + RRIAVL ++ + E + + +++ +++ G L Sbjct: 629 CTMQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVNITVCYGETAAELMKTADL 688 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 +S V T L F++ +L D D V+ K S + Sbjct: 689 KSKFVIKLNTRQALTEFLKLNLRDNDAVLFKGSTVTELDEI 729 >gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 515 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 82/488 (16%), Positives = 155/488 (31%), Gaps = 59/488 (12%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 +A+ P + G+++DSR + + AF AIKG DG DFI A+ GA +++ Sbjct: 11 KALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQ 70 Query: 72 TDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125 TD + G + + + + ++ L+ LA A K T +A+TG+ GKT+T ++ Sbjct: 71 TDDSEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQL 130 Query: 126 LTIALSSIKKTY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167 LT ++ + P + + DF E+ Sbjct: 131 LTQLKDALGTRSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHA 190 Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE---------- 215 S ++ V+ IAV T + HL +EE AK + Sbjct: 191 AFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQPGLKAVVLN 250 Query: 216 -GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 +++ D++ + + + ++ S E+ Sbjct: 251 ANDDESNKWDNVADNAITRIWTGIDESADGALFRAHNNPQSRHCFATNASYHSGGCSFEL 310 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 S + G N+L +G + D +KA++ P GR + + Sbjct: 311 VSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFPVPG 370 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + +A VL H G+ V G G + L Sbjct: 371 AANLVVDYAHTPDA-------LEKVLLSAKFHTAGKVWCVFG----CGGDRDTGKRPLMG 419 Query: 395 VLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + + ++ + + L S + + D Sbjct: 420 QAAEAGADAIVITTDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSD 479 Query: 446 VVVV--KS 451 +++V K Sbjct: 480 IIIVAGKG 487 >gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema succinifaciens DSM 2489] gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema succinifaciens DSM 2489] Length = 568 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 65/514 (12%), Positives = 134/514 (26%), Gaps = 80/514 (15%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G S V G++ DSR + FFA+ G H G+ FI AV GAG VV ++ Sbjct: 25 DGISSPKNTDACVEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVVFQDEI 84 Query: 75 VASI----------GSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 S + V A++ ++ + ++ +TG+ GK++T Sbjct: 85 TQEEHSQIKEALASSSKKVVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYGVTGTEGKSST 144 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARM----PVDVDFGI 164 + L I + +G P+ + + Sbjct: 145 VSFIWQLLRLNGIKAGFISTVQYSLGGDAIDNPQHQTTPEAPVVQRELYEMVCNGCTHAV 204 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E L + V AV + HL E+ S KA +F L+ Sbjct: 205 VESSSHGLSKKLNRLGNVLFDCAVFMNVTLEHLEFHGTYEQYKSDKANLFRALDLHNH-- 262 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + ++ + + + + + Sbjct: 263 -EKTIAGVATKIPAFGVVNLEDPAASYFASCTKHKTIGFTTEGKAGKQAALGLSSPPLPE 321 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + + + + +L+ + A N T Sbjct: 322 IPKDMPYFSCRNIASARFGLAFSIHRFETHDSLNNENSVVHVKASVPGAFNAYNITAAIL 381 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAV------------------------------ 374 + + +++ +Q +GR + Sbjct: 382 AVHGTTGISIEKLALCAQKLTSVKGRMTVIDEGQPFEVIVDYAHTPSSFETIFPPLKNRA 441 Query: 375 LGDMCEM---GELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------------ALKDA 417 +G M + G + L ++ V L+ A K+ Sbjct: 442 MGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPRKEDRMTIIEQIALGARKEG 501 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + S + D+V++ Sbjct: 502 KKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLG 535 >gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 513 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 83/466 (17%), Positives = 154/466 (33%), Gaps = 63/466 (13%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 V G++ DSR + F AIKG DG+++I A+Q+GA ++ + A L + Sbjct: 25 VEVQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGAVIIYTEHRITA----LGVM 80 Query: 85 VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + + L L A K +I ITG+ GKTTT ++ AL + IG+ Sbjct: 81 IKICSNARKTLADLCNAFYDHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVGLIGT 140 Query: 143 YNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAV 188 + I + I+ + +S G H ++ IA+ Sbjct: 141 LDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSERVHGIKFDIAI 200 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T I HL+ + + +K ++F+ L LN DD+ L + Sbjct: 201 HTNIERDHLNYHKNMGDYIRSKKKLFDCLSPGKVALLNLDDNHSLELL---TGNNGLIVV 257 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----------MEVVHHGIGYHMAQNML 297 ++G + A ++ +G + + +G H N L Sbjct: 258 TYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSINLLGKHNIYNSL 317 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + +L + K + F R + + + ++ NPAS A Sbjct: 318 AAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVIYKKGY-----TVIDDFSHNPASYGAVF 372 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------------NI 401 + + A+ G G + D+ ++ + Sbjct: 373 ESMQNLEYKNLHVINAIRGS---RGADINQENADVLKIWYELLGMKTLMITSSKDKTGKL 429 Query: 402 SHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 V + G L + S++ Y + + I + +GD Sbjct: 430 DEVQVEEIGAFFKVLSEG---SVNFEYVDHLSDAIETIIPRIEEGD 472 >gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 471 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 60/453 (13%), Positives = 130/453 (28%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A++G DG +I A+ +G ++ A G + +PV Sbjct: 2 TLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 + + L+ LA + + + + T +A + Sbjct: 62 YLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTVG 121 Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 G+ + + + +S G ++ ++ +V T Sbjct: 122 NGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + ++ E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAHTPDA-------LEKALQAARLHCSG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E + DVV+V K Sbjct: 411 AGQAKVMEGRAKAVTNAVMQAKENDVVLVAGKG 443 >gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] Length = 501 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 87/486 (17%), Positives = 153/486 (31%), Gaps = 51/486 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 MN L T L +A+ + V G + DSR I P + F A G DG + Sbjct: 1 MNALHTLTTLQEAV------DWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGD 54 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 AV +GA +V + V + + + A +A + ++A+TG+ Sbjct: 55 AVARGAAACLVECEGVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTN 114 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI-------- 164 GKT+T L AL+ + K + +GVP L + + Sbjct: 115 GKTSTAWWLADALNQLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQ 174 Query: 165 --------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + S +G R H+A+ T HL G+ AK +F+ Sbjct: 175 FAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDW 234 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D L ++S A Q + + V Sbjct: 235 PGLRAAVVNVDDPQGAALHAE--LQGSDLDLWSISLQGPARLQAKHIVHTGAGLALTVAE 292 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + + IG + N+L + + L + A++A + P GR ++ A Sbjct: 293 GAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQP 352 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 Y P ++ A++ L ++ GR V G G + L + Sbjct: 353 LVAVD----YAHTPDALHQALAALKPVAAQRGGRLWCVFG----CGGNRDAGKRPLMGAV 404 Query: 397 SLYNISHVWLS-----GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + V ++ G ++ + V + DVV Sbjct: 405 AQREADEVIVTSDNPRGEEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVV 464 Query: 448 VV--KS 451 ++ K Sbjct: 465 LIAGKG 470 >gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum WAL-14673] gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum WAL-14673] Length = 487 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 146/469 (31%), Gaps = 43/469 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + L+ ++ + V+ + DSR A F ++G + D H FI +QKG Sbjct: 1 MKLREWLKEMEYELLQGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122 A ++V + I V V + AL+ L A K T I +TG+ GKTTT Sbjct: 61 AKVLVTEEAV---TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTIGVTGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L + + IG+ IG + + + E Sbjct: 118 TYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKMVEQGCRYMVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S + + ++ I+ H+ + EE K + + Sbjct: 178 V--SSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLLLQNSRVCLVNR 235 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + I +F +ADF+ K E ++ + + + Sbjct: 236 DDGHF-------REIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEGDYES 288 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + N+ + + + + + ++ R T+I + Sbjct: 289 RLRVNVPGLFNVYNAMAAAGVCSCLGLS-KERVAHALEHMQVDGRMEIVYKSAKCTVIVD 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401 + + S+L + + R + V G + ++ L+ +I Sbjct: 348 YAHNAVS----MESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITA 403 Query: 402 --SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 S + + +K L R + S DGD++ Sbjct: 404 DNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQDGDII 452 >gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella cf. novicida 3523] Length = 475 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 137/474 (28%), Gaps = 49/474 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + +L+ + ++ + +S+DSR + AF A+KG DG+ +I + K Sbjct: 1 MKNINQILKFLDIQTLSQN-NFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAK 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122 LV+ ++ +F + ++ L+ LA + II ITG+ GKT+ Sbjct: 60 DISLVLTDSHEFEDQK----RIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKTSI 115 Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 + L + ++ + + + E+ Sbjct: 116 SSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYHKNYQNLVMEV- 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S + T + +AV + ++ HL ++ AKA++ Sbjct: 175 -SSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKL-----FQFKSLKKAI 228 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + I + K K + Sbjct: 229 INIDDEYGQRLCNITKVPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + L S+ I L +GR + + + +A Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKSVKGRMEVIELDNDIKIVIDYAHTPDA 348 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 L ++ + + G G + + ++ S + ++ Sbjct: 349 -------LEKALQTLANYNPNNLWCIFG----CGGNRDTTKRPIMAQIAEEYASKIVVTE 397 Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +K + + + F + GD++++ K Sbjct: 398 DNNRFENIENIFSDIKKGFKYPQKHTFITSREQAIRFSIENANQGDIILLAGKG 451 >gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] Length = 237 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 32/227 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I F + G DG H F+ Sbjct: 1 MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161 GKTTT +L LS +G+ +G + D Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + + E+ L R + IAV T + HL +E Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHETFDEYKH 218 >gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 471 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 142/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ AS G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++A+TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK ++ I D+ L + A+ + Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E + D DVV++ K Sbjct: 411 AGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKG 443 >gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces bingchenggensis BCW-1] Length = 544 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 87/489 (17%), Positives = 142/489 (29%), Gaps = 58/489 (11%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +L + + + V GI+ DSR++ P + + A+ G G DF A Sbjct: 35 LRELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQA 94 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 GA V+ + + +PV V++ G + LA I ITG+ G Sbjct: 95 ADLGAVAVLTDPGGADRAAATGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGITGTSG 154 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 KTTT ++ V + + + E Sbjct: 155 KTTTAYLV-EGGLKAAAAKGDGSLTGLIGTVESRIGDERIKSERTTPEATDLQALFAVMR 213 Query: 167 --------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + +S + +AV T ++P H+ S +E+ AKA++ Sbjct: 214 ERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQL----- 268 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 T + + + L + +F + D R E + G Sbjct: 269 FTKARSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILG 328 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + E V A N+ TL V L A G R Sbjct: 329 PNGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQP 388 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + + + + A SVL + EGR AVLG G Sbjct: 389 YLAVVDYAH----KTDAVESVLRALRKVTEGRLHAVLG----CGGDRDQQKRGPMGAAVA 440 Query: 399 YNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL--------VDG 444 L+ + + L L + V E D L ++ G Sbjct: 441 RYADTAVLTSDNPRSEDPLAILATMLAGAAEVPAHERGDVLVDADRAQAIAAAVARAEPG 500 Query: 445 DVVVV--KS 451 D V+V K Sbjct: 501 DTVLVAGKG 509 >gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 244 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 79/225 (35%), Gaps = 32/225 (14%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61 +L + + G+ +DSR I F + G DG H F+ AV Sbjct: 10 LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVEDAV 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119 + GA ++V D+ ++ IP V D A+ +A +K +I ITG+ GK Sbjct: 68 KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163 TTT +L LS +G+ +G + D+ Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + E+ L R + IAV T + HL +E Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHETFDEYKH 225 >gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia vafer str. BVAF] Length = 515 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 66/466 (14%), Positives = 156/466 (33%), Gaps = 45/466 (9%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + + +DSR++ F AIKG DG +I HA++ GA V++ + + + Sbjct: 30 SSALVITALQLDSRNVTVGNLFIAIKGHKTDGRLYIKHAIKNGAVAVLLESTNNDNFLAQ 89 Query: 82 SI--------PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 +I P+ + A++ +A +I +TG+ GKTT +L + Sbjct: 90 NIVNNVSSCVPIINFYKLNQAVSSIAGRFYGHPSRNLNLIGVTGTNGKTTISHLLANWVE 149 Query: 132 SIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRF 177 + + A +G+ + + ++ + + +S G ++ Sbjct: 150 LLGEKSAVMGTIGYGMIGSMCVSNCTTFSAIDTQRILNQFIQSGIKFVAMEVSSHGLDQY 209 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + +A+ + + HL I + AK +F L T + D +E L Sbjct: 210 RVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKWRLFSELCVTNYVINVDDYIGYEWLSY 269 Query: 238 KSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 +++ + + K ++ +L K + + + + +G N+ Sbjct: 270 LPNSVAVTIQDNLPKFWKGEWIKLVKANYFVYGTDVFFHSSWGNGIIRSQLLGECNVSNL 329 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ LG + +L + + P GR ++++ + +A ++ Sbjct: 330 LLALGALLVLGYPLMVLLSIADQLKPICGRLEKFKSFNKPTIIVDYAHTPDALEKILRFL 389 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412 + L +G+ V G G +++ +V ++ + Sbjct: 390 GAQLC-----KKGKLWCVFG----CGGNRDKLKRSRMGIVAERYSDYVVITDDNPRTENS 440 Query: 413 -----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + S + + D +++ K Sbjct: 441 QSIIDDIILKIKHSEKITIIKNRVQAIETAICQADSNDFILIAGKG 486 >gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] Length = 482 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 93/475 (19%), Positives = 165/475 (34%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169 +L I + N+I + L RM + + + + Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV-FMEV 179 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + ++ + T + HL +E AK + F+ L K N DD Sbjct: 180 SSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDD 239 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ + + +Y++ +DF+ R + E + L + E+ IG Sbjct: 240 KNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A N+L G +L + + ALS HP GR R Y Sbjct: 292 KFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHT 347 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 348 PDALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSD 402 Query: 410 HVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GDV++V K Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas gingivalis W83] gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas gingivalis W83] Length = 487 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 140/476 (29%), Gaps = 49/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L ++ ++ + V+ I+ DSR F A++G DGH +I A +G Sbjct: 1 MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 VV + V D AL LA A T++ +TG+ GKTT Sbjct: 61 CRAFVVED--LPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTV 118 Query: 123 KEMLT-------------IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 +L + + + ++ + L R D + Sbjct: 119 ATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + + T + HL + E AK F+GL +N D Sbjct: 179 VSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A + ++ A+++ + ++ + M + + + Sbjct: 239 DKNGLVMVQNTRA----RVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR------ 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L + + L + R++ ++ + I + Y Sbjct: 289 -LVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVD-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ + + ++ + I V+G G + + + L+ Sbjct: 347 TPDALINVLDTIRPLAKSHK--VITVVGA----GGNRDKGKRPIMAKEAARRSERLILTS 400 Query: 408 ----GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GD V++ K Sbjct: 401 DNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKG 456 >gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] Length = 490 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 158/473 (33%), Gaps = 38/473 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++ + G + + GI+ DSR++ F A+KG DG F A Sbjct: 1 MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFAADA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V++GA ++ DM +I +PV VDD L A + ++A+TG+ GKT Sbjct: 58 VKRGAVAIIAGKDM--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR T + H+ + I+E AK +F L G + Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D F ++ L + + G+ N L++ + + +EV++ + E+ Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ + A++AL++ GR + +D ++ Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL+ + P GR I V G G + ++ V + Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + S + GD +VV K Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457 >gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 490 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 150/479 (31%), Gaps = 53/479 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ +Q + + + ++ DSR + F I G DGH +I +KG Sbjct: 1 MKLTALLERLQYEVVQGTKEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYIEEVGKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122 A V+V D+ A + V V+D AL A + +I ITG+ GKTTT Sbjct: 61 AAAVIVEKDVEA---PKHMTVIRVEDTRYALALASAAYFGYPAEQLKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L + IG+ IG R VD + Sbjct: 118 TYMVKSILEEVGHKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKMVDAGCDAVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226 +S G + T + I + T + H+ E+ K + Sbjct: 178 VSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLL-------FRQCKI 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283 + + I +FG S+ AD + + + + +V Sbjct: 231 GIANVDDPYFKDVFREATCEIETFGFSEKADLRAEHAELVTRPGYLGVAYHVAGLMDFDV 290 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N L + + + KAL R FTL+ Sbjct: 291 EIDIPGTFSVYNSLTAIAVCRHFNVPSEKIQKALK----VAKVKGRIEMVKVSDEFTLMI 346 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + Y N S+++ ++ L + P ++ G S++ ++ EV Sbjct: 347 D-YAHNAMSLESLLTTLKEYHPKR------LVCLFGCGGNRSKTRRYEMGEVSGRLADLT 399 Query: 404 VWLSG----FHVLALKDALP---RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + S + D + + Y E + + GDV+V+ K Sbjct: 400 IITSDNPRFEEPQEIIDDIKIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKG 458 >gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens] Length = 539 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 76/438 (17%), Positives = 145/438 (33%), Gaps = 41/438 (9%) Query: 1 MNPL--WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 M P T +LL + + + GI DSR + P + F +KG DG++F Sbjct: 2 MEPTYRMTLAELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEF 61 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAIT 114 A++KGA +V +++++ + G + V+D L+ LA A ++ IT Sbjct: 62 AHQAIEKGAVAIVSSSEVLPAEGLEAS--VVVEDTNILLSGLAGAFYGHPSKNLAVVGIT 119 Query: 115 GSVGKTTTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-------LTLARMP 157 G+ GK TT ++ ++ P + + Sbjct: 120 GTNGKATTSYLIRSIYEAMGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVH 179 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFE 215 D I E+ S V +AV T + +E AS K Sbjct: 180 HGTDACIMEV--SSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKM 237 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + +N DD + + + Y+ G +KNAD + + +S + V+ Sbjct: 238 VNPEKHRKIVNIDDPQSDYFVTQGNQDVPVVTYAMG-NKNADVYPLEVQLSLFESELLVR 296 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 ++E+ +G H N+L + + + A ++ ++ + GR + Sbjct: 297 TPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELIDEEQA 356 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 + + +L + G R I VLG L Sbjct: 357 FAVIVDHANTPDG-------LSRLLDTVRECGPRRIITVLGSQG----DRDKAKRPLMAK 405 Query: 396 LSLYNISHVWLSGFHVLA 413 ++ + + + Sbjct: 406 IATDKSDVCIFTSDNPRS 423 >gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas gingivalis ATCC 33277] gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Porphyromonas gingivalis ATCC 33277] Length = 487 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 140/476 (29%), Gaps = 49/476 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L ++ ++ + V+ I+ DSR F A++G DGH +I A +G Sbjct: 1 MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 VV + V D AL LA A T++ +TG+ GKTT Sbjct: 61 CRAFVVED--LPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTV 118 Query: 123 KEMLT-------------IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168 +L + + + ++ + L R D + Sbjct: 119 ATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFME 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + + + T + HL + E AK F+GL +N D Sbjct: 179 VSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNAD 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D ++ + A + ++ A+++ + ++ + M + + + Sbjct: 239 DKNGLVMVQNTRA----RVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR------ 288 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L + + L + R++ ++ + I + Y Sbjct: 289 -LVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVD-YAH 346 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 P ++ + + ++ + I V+G G + + + L+ Sbjct: 347 TPDALVNVLDTIRPLAKSHK--VITVVGA----GGNRDKGKRPIMAKEAARRSERLILTS 400 Query: 408 ----GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + GD V++ K Sbjct: 401 DNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKG 456 >gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 57-2] Length = 471 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + E + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + E + DVV+V K Sbjct: 411 AGYAKVMEGRAEAVTCAVIQAKENDVVLVAGKG 443 >gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] Length = 518 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 83/510 (16%), Positives = 167/510 (32%), Gaps = 66/510 (12%) Query: 10 LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + Q +QG + P V+G+S+D+R+++ F A+ G DG FI Sbjct: 8 IAQLLQGVWLAEAPLDASVANIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEKCDSA 67 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 A ++ D + ++PV + + ++++A TII ITG+ GKTT Sbjct: 68 TA-AILAEADTFGVDLTGAVPVVHIPQLKQKISRVAANFYGHPSRSLTIIGITGTNGKTT 126 Query: 122 TKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIF------------ 165 +L LS ++ + + + + G P+ L + + Sbjct: 127 CAYLLAQLLSKLQFSCGMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQV 186 Query: 166 ---ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G + V + A+ T ++ HL + +EE A+ KA +F E + Sbjct: 187 GAVAMEVSSHGLAQGRVADVDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAREELSFV 246 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGK 279 + D +L I YS G + Q S V Sbjct: 247 VINADDAVGVNILTNGVAPQAITYSYSLGGEQALVAQSENTIVAHSIEWGSSQTVAQLHT 306 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 G N+ L +++ A + ++ + R + + Sbjct: 307 PWGAAELATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSSEQP 366 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + Y P ++ VLS+++ + +G+ V+G G L ++ Sbjct: 367 LAVFVDYAHTPDAL---EKVLSEVAAYTQGKLWVVIG----CGGNRDVGKRPLMAEVAER 419 Query: 400 NISHVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV--- 447 + V L+ + + L + ++ + D + Sbjct: 420 LANCVVLTSDNPRDENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDAIVIA 479 Query: 448 --------VVKSSNSCGFYRLI--NLLLEE 467 +VK +L + L+ + Sbjct: 480 GKGHENYQLVKG------EKLPFDDALIAK 503 >gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] Length = 499 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 91/465 (19%), Positives = 154/465 (33%), Gaps = 42/465 (9%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 Q G P + G++ DSR++ P F A+ G DG FI A+ KGA V+ Sbjct: 20 QARPAGADPD--IAGLTADSRAVRPGFVFAALPGVKADGRAFIADALAKGAVAVLAPEGT 77 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIAL--- 130 GS ++ + A ++A A R T++A+TG+ GKT+T + Sbjct: 78 ELPAGSTAL-LLTDPQPRLAFARMAAAFHGGRQPETVVAVTGTNGKTSTVQFAAQIWARM 136 Query: 131 --------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLT 179 + G P++L R + + S G +F Sbjct: 137 GLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHLAMEASSHGLEQFRL 196 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V A T + HL +E AKA +F+ + G I + DS A Sbjct: 197 DGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAVLNADSDDFHFFATI 256 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + S+G A+ ++ + + + + + G+ + V G A N+L Sbjct: 257 CDERGQRVLSYGL-AGAELRVTGVEPLAHGQRLSLTVLGRDVTVDLPLAGRFQAWNVLCA 315 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 LG+V D A+ L GR + N T+ + + A +V Sbjct: 316 LGLVIGSGGDATRALATLPALEGVPGRLQHVATHPNGA--TVYVDFAHTPDA----LETV 369 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410 L + H + V G G + L+ ++ + Sbjct: 370 LLALRSHAARDLVTVFG----CGGDRDRTKRPVMGALAARLADRAIVTDDNPRTEDPAFV 425 Query: 411 -VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L A + + L GDV+V+ K Sbjct: 426 RSEVLAGATGELAGRLEEIGDRAEAIRTAVRRLQPGDVLVIAGKG 470 >gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] Length = 464 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 73/471 (15%), Positives = 147/471 (31%), Gaps = 60/471 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + I + G+ ++++S P + F A++G +G D+I A+ KG Sbjct: 1 MNISQLL----INIIQTEVDIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKG 56 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 ++V++ + +IP V+++ L LA +K +I +TG+ GKT+ Sbjct: 57 CVAILVDSKEIE----CAIPSIRVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVT 112 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGM 169 +++ L + IG+ L D+ + + E + Sbjct: 113 YLISQLLEKLGVKNGLIGTLGITHNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIE--I 170 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + AV T + HL ++E + K +F I D Sbjct: 171 SSHALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFTLNCVKSVILNQDDH 230 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + LK K K + +Q +G Sbjct: 231 HYKHFLK-------------VSKGKKQTSYSLNDFNSIKIIQQGFLVQLDHYVFEIPFLG 277 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L TL V L + I + GR ++ Y Sbjct: 278 EFNLLNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQINHYHAWID-------YAHT 330 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P +++ AI+ L + P+ + V G G ++ + L+ Sbjct: 331 PNALENAITTLQKHYPNFK--IRIVFG----CGGNRDRNKRSKMGRIASKLADSIILTND 384 Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + S + + +L + +++ Sbjct: 385 NPRSENPQTIINDILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITG 435 >gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-3-3Ab] gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-3-3Ab] Length = 529 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 86/485 (17%), Positives = 149/485 (30%), Gaps = 52/485 (10%) Query: 6 TFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + LL G + V G+ DSR + + F + G DG +F+ A+ Sbjct: 15 SLGQLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALT 74 Query: 63 KGAGLVVVNTDMVASI----GSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAIT 114 +GA ++ + + G S P+ + + AL ++A A + T++ +T Sbjct: 75 RGAVAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVT 134 Query: 115 GSVGKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPV-------- 158 G+ GKTTT ++ L + + G L + Sbjct: 135 GTNGKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEA 194 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + + E+ SH AV T + HL +E AKA +F+ Sbjct: 195 GAEVAVMEV-SSHALAQDRAWGCS-FAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPEY 252 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQ 277 G +N DD L A YS + + + Sbjct: 253 LQGRAVVNADDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHPNGLQATLHTP 312 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 ++ V +G N+L +G+ L ++ AL F GR R L Sbjct: 313 LGTLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGR--MERVTLPGQ 370 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+I + + ++L + P +GR I V G G ++ Sbjct: 371 DITVIVDYAHTPDG----LENLLKALRPQVQGRLICVFG----CGGDRDRGKRPQMGRIA 422 Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V ++ + + +P S GD VV Sbjct: 423 ATWADRVVVTSDNPRTEDPQQILQDILAGIPGSPWAVEV-DRRQAIRLAILEAQPGDTVV 481 Query: 449 V--KS 451 + K Sbjct: 482 IAGKG 486 >gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 498 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 87/481 (18%), Positives = 162/481 (33%), Gaps = 48/481 (9%) Query: 5 WTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +++ + + + I DSR + + F IKG ++D H Sbjct: 1 MRLSQVIELLGNSVLQVVNPGNVDPEFDHIESDSRGLKERNLFICIKGTNFDSHLIAREL 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVG 118 +KGA +V M + +P+ V AL + K T I +TG+ G Sbjct: 61 QRKGAVALVAE--MPIEDEEVVVPIVYVKSSRLVEALLTMEEYCHPYRKLTTIGVTGTNG 118 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFE 166 KTT ++ LSS ++ + IG+ N +G P+ LA++ E Sbjct: 119 KTTITTLIYHVLSSFERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKLLQLSTKLKSE 178 Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S +R + +I+ + HL ++ +K ++F L+ G Sbjct: 179 YFIMEVSSHSLSMNRVEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKLFSLLKTNGIA 238 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSME 282 +N D + + I ++G +D+++ +Q S Sbjct: 239 VVNGDKINIADI-----HISRNRITTYGFGDESDYRIENLDISRTGMDFTIQTPYGSSHR 293 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG H A N+ + ++ L D+D KA+S F GR + A GF ++ Sbjct: 294 IYSRLIGEHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDVVV 353 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + +L GR I V G G + L +S Sbjct: 354 DFAHTPDALE-----KLLKTARRLTPGRLILVFGA----GGSADKGKRPLMSEVSSKYSD 404 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453 V L+ L+ + + + D+V++ Sbjct: 405 VVILTSDDPKLDDPAEILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAG-R 463 Query: 454 S 454 Sbjct: 464 G 464 >gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1] gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1] Length = 488 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++ + G + + GI+ DSR++ F A+KG DG F AV++G Sbjct: 1 MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A ++ D +I +PV VDD L A + ++A+TG+ GKT+ Sbjct: 60 AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + + S Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T + H+ + I+E AK +F L G + + D Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F ++ L + + G+ + + E+ V+++ Sbjct: 238 QFSAQAVEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + + V A ++ K G+ + + + Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A +VL+ + P GR I V G G + ++ V ++ + Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + GD +VV K Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455 >gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] Length = 488 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 135/447 (30%), Gaps = 40/447 (8%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 IDSR + P + F A+ G G DF A+++GA V V DD Sbjct: 26 IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAV-VAAPGTLPATLSQQNCVVHDDP 84 Query: 92 LGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-- 147 AL LA A R +I +TG+ GKTT +L AL + + IG+ N Sbjct: 85 REALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIANRWPG 144 Query: 148 -------GVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 P + +S + T +R AV+T ++ Sbjct: 145 HEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVLTNVSQD 204 Query: 196 HLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E A + L + G +N DD + L+ +++S Sbjct: 205 HLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSLHSEKAQ 264 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + + QG+ + +G H N+ M + Sbjct: 265 DPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANL-MAAQATLLALGFGPAD 323 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 LS P GR +R A F + +A +VL ++ R + Sbjct: 324 AAVLSDAPPVPGRLERVENAAGLDIFVDYAHTPDA-------LENVLQAMTALDGNRLLV 376 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRSIHV 424 V G G L+ + + D L V Sbjct: 377 VFG----CGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRV 432 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451 +V GD++VV Sbjct: 433 VEESDRKAAIALALQEMVPGDILVVTG 459 >gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 4343-70] gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-218] Length = 495 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DS A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSCVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 TTT ++L + + + N +G + E Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467 >gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia pyrifoliae Ep1/96] gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia pyrifoliae Ep1/96] Length = 490 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 69/469 (14%), Positives = 132/469 (28%), Gaps = 45/469 (9%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 + P+ + +++DSR A + F AIKG DG FI A+ +G V+ + Sbjct: 6 APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGE 65 Query: 76 ASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131 A G + +PV + + L+ LA + + I + T +A Sbjct: 66 AEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLLAQW 125 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEI 175 + G+ L+ + + +S G + Sbjct: 126 AQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLV 185 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + + A T ++ HL + A + + G +N DD Sbjct: 186 QHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAIINADDEVGRRW 244 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 K T+ + + L+ K + + + +G Sbjct: 245 LEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNV 304 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L+ L + L +D S P GR + + + +A Sbjct: 305 SNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKPTVVVDYAHTPDA----- 359 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-- 411 L+ H +GR + G G L ++ V ++ + Sbjct: 360 --LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADVVVITDDNPRS 413 Query: 412 -------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + GD+V+V K Sbjct: 414 EDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 462 >gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] Length = 506 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 82/478 (17%), Positives = 152/478 (31%), Gaps = 39/478 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + I+ + V I DSR IA + F + G DGH +I AV+KG Sbjct: 1 MKLSKICEKIKYECLQGSMDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++VV D A+ +I V V+ AL ++ A K I +TG+ GKTTT Sbjct: 61 ASVIVVERDEEAAQIPGTITVLKVESARYALALMSAALFDYPAEKLITIGLTGTKGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFE---LG 168 M+ L + K IG+ IG L RM + E + Sbjct: 121 TYMIKNVLEAAGKKVGLIGTIGAMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVME 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226 +S G T + V T ++P H+ + EE K+ +F + + Sbjct: 181 VSSQGLKMDRTAGIMFDYGVFTNLSPDHIGPNEHASFEEYLECKSMLFRQCKIGILNADD 240 Query: 227 YDDSFF--ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 K D E + + K Sbjct: 241 EHSEAVAANHTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENGKLGMYFHVKGCMDC 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + ++ +L + + + L + + +G+ +++ ++ +ID Sbjct: 301 EARVHIPGRFSVYNSLVTMLVCHLAGISDQAILDGLNKVQVKGRVEMLPVSKDYYLIIDY 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + + + + H + G G S+ D+ EV V Sbjct: 361 AHN----EVSTRSVLTTLMEYHPKRLICVYGGG----GNRSKLRRYDMGEVTGEMADLCV 412 Query: 405 WLS----GFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451 + + + + + + + GD +V++ K Sbjct: 413 LTCDNPRDEEIRDINNDIKVGLAKSNGKYIEIDDRKEAIAYCMVNAQPGDMIVLLGKG 470 >gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brachyspira hyodysenteriae WA1] gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brachyspira hyodysenteriae WA1] Length = 508 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 75/473 (15%), Positives = 161/473 (34%), Gaps = 51/473 (10%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNT 72 + G + DSR I F AIKG DGH +I A+ A +++ + Sbjct: 18 QLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESAINNKASIIIYDNTADK 77 Query: 73 DMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128 + + + + V + L ++ I I ITG+ GKTTT +L Sbjct: 78 EFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKINTIGITGTNGKTTTTYLLKS 137 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHL 172 L + K IG+ N IG + + + E S Sbjct: 138 VLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKSLKKGISHIVME--SSSQ 195 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 + A+ T I HL ++ AK ++F L+++ + Sbjct: 196 ALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLLKESSKKKKLAIVNID 255 Query: 233 E---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + ++G ++ AD+ + S+ + E +GK + V + Sbjct: 256 TDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTEYEFYAKGKLISKVKLSM- 314 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+L +L I++ + + K++ + G+ + F + + Y+ Sbjct: 315 -LGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQVEGRFEIVTKEKHPFIVAVD-YSHT 372 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P S++ + +++P+ IAV G G + ++ L+ Sbjct: 373 PDSLENILVEAKKLNPNR---VIAVFG----CGGDRDRKKRPIMAEIAEKYADIAILTTD 425 Query: 410 H---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + + + + +F ++ + D++++ K Sbjct: 426 NQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKE-AKENDIIIIAGKG 477 >gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 471 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 68/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVV 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++A+TG+ GKTTT ++L + + + Sbjct: 62 YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + + +S G ++ ++ +V T Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK ++ I D+ L + A+ + Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K + P GR + + + +A L H G Sbjct: 302 LTNLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V E D DVV++ K Sbjct: 411 AGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 443 >gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC 49176] gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC 49176] Length = 276 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 14/282 (4%) Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +IT I HL + I AK EIF+ L+ TG I LN DD L + GI+ + Sbjct: 1 MITNIGLCHLEFLKSRDGILKAKTEIFDFLKPTGHIILNVDDD---KLVTVENVKGIQPM 57 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + ++KN + + + + + + V+ G+HM N L + + Sbjct: 58 FFGIENKNGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGTAVGLTYS 117 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ + P GR ++ G +T++D+ YNANP SMKA++ VL+ Sbjct: 118 LSLEEIKAGIESLQPVSGRFH----IIDTGKYTVVDDCYNANPVSMKASLDVLTD----A 169 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424 GR++A+LGDM E+G+ H ++ N+ + G + +A + + Sbjct: 170 LGRKVAILGDMGELGKEEVEMHREVGVYAVSKNLDLLICMGELSQYMAEAAKHAAPTKPI 229 Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 + +T + L + L GD +VK+S+ GF ++ L + Sbjct: 230 FHFKTKEELLQELPQILQKGDTALVKASHFMGFEDVVKELEK 271 >gi|270055566|gb|ACZ59059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus] Length = 680 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 87/485 (17%), Positives = 180/485 (37%), Gaps = 38/485 (7%) Query: 4 LWTFHDLLQAIQGHS--IGIVPQGFVNGISI---------------D----SRSI--APQ 40 + T + I G +N + SR + Sbjct: 1 MLTIEKIYHIIGGELKDAHNRESNEINDFETTYKFVKSKKTAYFSPNKETWSRELGRNKN 60 Query: 41 EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 DG+D + K GL++ + S ++P V D + A KLA+ Sbjct: 61 AL---------DGNDLVDR-QNKEIGLIITES--YISNLKFTVPQIIVKDSVQAFKKLAI 108 Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 R + K ++AITGS+GK++T+ ++T LS + N + + ++ + Sbjct: 109 YIRNQYKNPVVAITGSMGKSSTRMLITSLLSDFDVLENRGNN-NVRAAIYNNMLKLIKNP 167 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 DF + E ++ + + ++P IA+IT I AH S F +++IA K +FEGL Sbjct: 168 DFAVIETSLNAINYLENTAVYLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRVFEGLADN 227 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 G +N D + + L K+ + K + + ++ + + Sbjct: 228 GVAIVNNDTLYADYLVDKARENTNNVLTYSIKKDSNADLTVDNIKYNKGNIGLLINDQNK 287 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 ++ ++++ + + L F P T Sbjct: 288 ETDIYQLNTISEGMVSNTLASMLTLKSLKLPIKKDLLKNFKPFSKILALKEIQTKSHKLT 347 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 L+D+++NA+ +M AI + + G +I +G + ++G S H+ L + L N Sbjct: 348 LLDDTHNASLPAMINAIRAFNSQTRFYTGNKIIAIGKISDLGHKSSETHLQLVDELESCN 407 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGFYR 459 ++ + + + + R+ ++ + + L ++ + + ++KSS F Sbjct: 408 ADYILCKDIELRQVVNKV-RNKNIIWYPNKELLINDLKYLCNENSLTLLKSSVTGTDFPE 466 Query: 460 LINLL 464 + L Sbjct: 467 IAKSL 471 >gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 492 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 71/473 (15%), Positives = 148/473 (31%), Gaps = 46/473 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L+ + + G + D+R + P + FFAI G G + AV GA Sbjct: 12 LGELIASCPAEY----ADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAV 67 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 V+ +TD A + +PV + DV + +A A K T A+TG+ GKTTT Sbjct: 68 AVITDTDG-ADFVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAF 126 Query: 125 MLTIALSSIKKTYACIGSYNNH---IGVPLTLARMPVDVDFGIFE-----------LGMS 170 M+ L+++ +T IG+ +P L + + +S Sbjct: 127 MIDHILNTLGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVS 186 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + +A T + HL + + E AKA +F + + D Sbjct: 187 SHAIAQGRIESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFT-EKFSRVGVAITDTP 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + E L + + S+ ++ ++ + ++ + G Sbjct: 246 WGEELVKRGNERVAALA-----SQPDQPAGWRFTGQADGTLTLRGENWGTITTSTNLPGD 300 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N + + +V+ + AL + + + + ++D ++N + Sbjct: 301 FNIANAALAIAMVAKAGYSAEAISAALLASNGVNPQVPGRMEVVAEAPRIVVDFAHNEDA 360 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + + P +G I + G L + ++ Sbjct: 361 -----LTKAIEALRPSTQGNLIVITGSAG----DRDVTKRPLMAKTVAERADVLVITDDD 411 Query: 411 V---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 L +P + + + D +++ Sbjct: 412 PHSEDPAHIRADLIAGIPTDTNWIEIADRREAITAMVTDACAEDTILIAG-RG 463 >gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-44] gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-44] Length = 491 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + I E + Sbjct: 116 SHIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRMIEENVNSAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G ++D + S + + +S+ + Sbjct: 236 AVLNNDDPVAEEYMRSTAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPNESINITMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + + + T + + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGR---FEVVDGGQDYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H L Sbjct: 352 AHTPDSLENVLITAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAAVATKYATHAIL 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + E S D++++ K Sbjct: 405 TSDNPRSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKG 459 >gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] Length = 501 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 82/486 (16%), Positives = 152/486 (31%), Gaps = 53/486 (10%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L + HD +Q ++ G + DSR +AP + F A G DG + Sbjct: 1 MIRQLTSSHDAVQWLRERVTGT--------LQTDSRLVAPGDGFIAWPGAATDGRAHVAD 52 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 A+ +GA +V V + G + + + A +A ++A+TG+ Sbjct: 53 AMVRGATACLVEQTGVEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTN 112 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI-------- 164 GKT+T L AL+S+ K + +GVP L + + Sbjct: 113 GKTSTAWWLAGALNSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQ 172 Query: 165 --------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + S +G +A+ T HL + + AK +F+ Sbjct: 173 YADQGLGACAIEASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFDW 232 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D + +L G ++S A + + V Sbjct: 233 PGLQAAVINVDDPAGAQLHAE--LTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVE 290 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + + + IG++ N+L L + + A++A S P GR +R Sbjct: 291 GAQRVPLQTRVIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRLVAPGQP 350 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 Y P ++ A+ L ++ G+ V G G + L + Sbjct: 351 LVAVD----YAHTPDALDKALQALRPLAVERGGQLWCVFG----CGGDRDAGKRPLMGAV 402 Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + V ++ + + + V DVV Sbjct: 403 AQQHADWVVVTSDNPRSEEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVV 462 Query: 448 VV--KS 451 ++ K Sbjct: 463 LIAGKG 468 >gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 171 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + I G ++G+ IDS+++ F I DGH+++ A+ Sbjct: 10 MNLKKLEEVINGEGLHESFHHLEIHGVRIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + +P+ VD+ L AL +LA R +I ITGS GKTT K Sbjct: 69 GAVASLWKKSYG--TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 +++ L S + + G++N+ IG+PLT+ M + +F Sbjct: 127 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLY 167 >gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Oribacterium sinus F0268] gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Oribacterium sinus F0268] Length = 495 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 64/462 (13%), Positives = 131/462 (28%), Gaps = 47/462 (10%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 G + + +S DSR + F +KG D HD I ++KG + VV ++ Sbjct: 14 LRGDGEREEFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVEKNLPDL 73 Query: 78 IGS----LSIPVFGVDDVLGALNKLAVAARLRSK-----------------ATIIAITGS 116 + + V++ AL +L+ A+++ + Sbjct: 74 PKEMQDREDLCIVQVENGRKALAELSAFYFSYPSKEMLMIGITGTKGKTTTASMVRAILT 133 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 + T + + + T +M + + S G Sbjct: 134 EAGYNCGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVV-MEASSQGFKM 192 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 T + + T I H+ E AE + T + Sbjct: 193 HRTDGILFDYGIFTNIEEDHIG-----ENEHKDFAEYKYYKSRIFTQSKTGLVNLDADFS 247 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQN 295 + +SF K ADF + + ++ + + E N Sbjct: 248 EEFMENAECPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGEEDWEIWNHLPGRYN 307 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + L +S+ + S + G+ G+ L+D ++NA Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQVNGRMEVVLQRGGYTVLVDYAHNA-----MG 362 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412 ++L + + R I V G G ++ + EV L+ + Sbjct: 363 MKNLLETLKAYKPKRLIVVFG---CGGNRAKERRYGMGEVAGEMA-DFTILTADNSRYEK 418 Query: 413 ------ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVV 447 ++ L + + E + +GD++ Sbjct: 419 TMDIISDIESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLI 460 >gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 535 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 84/507 (16%), Positives = 163/507 (32%), Gaps = 48/507 (9%) Query: 5 WTFHDLLQAIQG------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 DLL++++ + + + I+ S+ + F IKG DGH++ Sbjct: 1 MKLTDLLKSVKIDSSCHNQLKIELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHNYAK 60 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 HA +GA +++V I + + V D AL L+ I +T + Sbjct: 61 HAASQGATVIIVE----DFIEDIHVIQLKVSDSREALAILSSNFFDHPSKSMNIFGVTAT 116 Query: 117 VGKTTTKEMLTIALSSIKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFE- 166 GKTT M+ + + + + P + E Sbjct: 117 NGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHFARMRDREI 176 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S + + I+P H+ + AKA + K T Sbjct: 177 THVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLIRNASKAST 236 Query: 223 IFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE-------QSWME 273 LN D+ L+ ++ A I G +D + + Sbjct: 237 AILNLDEPLLIPLEKETEAQVITFGIENKSGTITVSDIRFSSGIPSFTVNIRKPFNTLSG 296 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK--RYR 331 ++ S ++ +GYH N L L + ++ + + F E R + + Sbjct: 297 KTIEITSFDLEMSVLGYHSIYNALTALVTGLVNDLPIEDIQRGIKNFQGVERRFQVLYDK 356 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHI 390 L + ++ ++ + G E+ E ++ FH Sbjct: 357 EFKVIDDLLLNQNNIDSCMETISHLDYNELHLVHAIRGSNGP--AHSTEIAESLTKWFHK 414 Query: 391 -DLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDG 444 +A+++ SHV DA I V + + +D LF L Sbjct: 415 MKIAKIILTTAPSHVNKIDEVTEEELDAFLKVMHQNKIEVTFFKELDDTLLFGVEQLNVA 474 Query: 445 DVVVVKSSNSC--GFYRLINLLLEEFP 469 D++++ ++S G + + LL E +P Sbjct: 475 DILLISGAHSMDQGARKTLELLKEIYP 501 >gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 478 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 150/452 (33%), Gaps = 40/452 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 VN +S I + F +G +DGH + AV +GA V+ N + + I Sbjct: 15 SLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPL-----DIDI 69 Query: 84 PVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 PV D +L + A K I +TG+ GKTT L L+ + Sbjct: 70 PVIMTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQTTTSAYIGTL 129 Query: 143 YNNHIGVPLTLARMPVD--------VDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVI 189 G L D E + +S + V I +I Sbjct: 130 GAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDRAGFVSLQIGII 189 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T I HL + AK ++ + + GT +N DD A A G + + Sbjct: 190 TNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDPHAA--AAIERASGRVNVVT 247 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG + + V+ + + + + + Sbjct: 248 FGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLLSLGW 307 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + I A ++ G+ +LN G L+D ++NA+ S +L + P+ +G Sbjct: 308 QSSRI-AAALQTIVAPDGRAQFLSLNNGATGLVDYAHNADGLS-----KLLEDVRPYTKG 361 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSI-HV 424 R I V G + + + + + S + V+ G + AL + V Sbjct: 362 RLIVVTGVTGDRIQDAS----GIGVLCSQLADTAVFTSDNPMGVDQEDIFRALTSQVSKV 417 Query: 425 HYSE--TMDGLFLFIQSSLVDGDVVVV--KSS 452 + E F + V GD++VV K S Sbjct: 418 PHFEISDRAEAIEFAKQLSVAGDLIVVCGKGS 449 >gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis XB6B4] Length = 516 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 134/499 (26%), Gaps = 64/499 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ S+ + I S + F IKG + DGHD+I+ AV+ G Sbjct: 1 MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60 Query: 65 AGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 A VVV+ + + + + V GV D AL +++ A Sbjct: 61 AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120 Query: 106 S--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------- 156 K II ITG+ GKTTT + L +G+ + G + A Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180 Query: 157 -------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 V + +S G + I V I P H+ A Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP-GEHASFAEY 239 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----- 264 L + +N DD E + +A Q Sbjct: 240 LYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQKADIVAERIT 299 Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E E + G N L + + D AL Sbjct: 300 FSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQRQTVP 359 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 F + + + + ++L + GR + + G G Sbjct: 360 GR----CENVRISDKFVFLVDYAHNE----MSLRNLLGTLRGFDPGRLVVIFG---CGGN 408 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLF 434 S+ + E + S + D + I Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468 Query: 435 LFIQSSLVDGDVVVV--KS 451 + +GD++V+ K Sbjct: 469 AYAFDHAREGDIIVLAGKG 487 >gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Spirochaeta coccoides DSM 17374] gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Spirochaeta coccoides DSM 17374] Length = 535 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 82/508 (16%), Positives = 153/508 (30%), Gaps = 67/508 (13%) Query: 1 MNPLWTFHDLLQAI----------QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH 50 MN +LL+ G +P + I DSR + A +G H Sbjct: 1 MNAPVRLSELLEFSSLAHTLVFLKDGRPF-PLPDIEITSIRHDSRVCDQGSIYCAFRGLH 59 Query: 51 YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KA 108 DG DF+ +A++KGA VV + + S +P V+ A L + Sbjct: 60 EDGIDFMDNALEKGAAAVVTDR--LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASAL 117 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----------------VPL 151 +I +TG+ GK+TT E L L + + + G + Sbjct: 118 KVIGVTGTDGKSTTIEYLWQLLRGQGVRAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHS 177 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L+ + SH + + + A+ TT+ HL +E AK Sbjct: 178 FLSSCRDHGLSIVILETTSHALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAK 237 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKA-----KSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + L + + +D++ + + K + S G S+ D L Sbjct: 238 LNLARRLLPGSPLVIPHDNARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTCI 297 Query: 266 ------CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LS 318 + + L ++ + +D ++A ++ Sbjct: 298 SATVLGMEPEQLAFTFAINDKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAIIA 357 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F R N T++ + + A A + H + V G Sbjct: 358 QFEKLSPVRGRAIPVPNSLGVTVLIDFAHTADA---FAHVMEEISRVHPKADITVVFGAA 414 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------------LKDALPRSIHVH 425 GE + + + + S + ++ + DAL R + Sbjct: 415 ---GERDTTKRAPMGAQAARW-CSRIIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTIL 470 Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++L GDV+++ K Sbjct: 471 RIADRKRAIREAVANLNRGDVLLLLGKG 498 >gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] Length = 522 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 95/488 (19%), Positives = 158/488 (32%), Gaps = 63/488 (12%) Query: 8 HDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + I + V G ++ ++ + P + F A+ G G DF A+ Sbjct: 4 EQLAELIGARILRAPGQGPSGRPVTGATLRAQHVRPGDLFAALPGTRVHGADFAATALDA 63 Query: 64 GAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 GA V+ + V L P + DD AL A I+ + Sbjct: 64 GAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQLRILGV 123 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVD 161 TG+ GKTTT +L AL++ T +G+ P A + V V+ Sbjct: 124 TGTSGKTTTTYLLESALAAAGFTTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVE 183 Query: 162 FGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 G+ + M S R + T ++ HL +++ AKA +F+G + Sbjct: 184 HGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLFDGRSE 243 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + + D + S + + EQ + G Sbjct: 244 HEVVCTDTDW-------GRKLVKPGTITVSTTGDASWTATDVEAFPTGEQEFTAHGPGGL 296 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S+ + G N L+ +GI+ + L+ + G+ R AL Q F Sbjct: 297 SLRMRLRLPGPFNIANALLAIGILHAAEVPTWAIERGLAE---VDVPGRMERVALGQDFT 353 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D S+ S VL EGR I VLG G L + Sbjct: 354 AVVDYSHKPGAVSA-----VLDAARAQAEGRVIVVLG----CGGDRDVAKRPLMGEAAAR 404 Query: 400 NISHVWLSGFH------------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGD 445 + ++ + +LA +A+P + E + GD Sbjct: 405 RSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDRREAIAEAVARASSGD 464 Query: 446 VVVV--KS 451 +VVV K Sbjct: 465 IVVVAGKG 472 >gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium phytofermentans ISDg] gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium phytofermentans ISDg] Length = 493 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 82/478 (17%), Positives = 161/478 (33%), Gaps = 51/478 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + ++ + DSR + F I G DGH F+ + KG Sbjct: 1 MKLTKLLERLTYQCKEGTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSFVNEVIAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 + ++V ++ + + V + AL L+ A K I ITG+ GKTTT Sbjct: 61 STVIVAEKEVSV---PDGVTLLLVSNTREALAYLSAAYFDYPAEKLKTIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167 M+ LS IG+ IG V A+M D + + Sbjct: 118 TYMVHSILSEAGIKTGLIGTIETMIGDTVIPANNTTPESYLVQQYFAKMVEDGCTCVV-M 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225 +S G + I V T + P H+ EE + K + Sbjct: 177 EVSSQGLMLHRVSGFTFDIGVFTNMEPDHIGPGEHGSFEEYMACKGLL-------FKQCK 229 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + + + T+ ++G S+ AD + S+ + V + K + Sbjct: 230 VGIANVDDKHMEQVLSGHTCTLETYGLSEKADLRAVDIDLHSKLGNLMVLYKVKGLCDFP 289 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + +L ++I + + V + +G+ +++ F +ID + Sbjct: 290 VQVNIPGKFTVYNSLTAIAICRHFNISTERIKEVLTKVKVKGRVEPVEVSKKFTMMIDYA 349 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +NA + SVLS + + R + + G G S+ ++ E +S + Sbjct: 350 HNA-----MSLQSVLSTLREYEPKRLVCLFG---CGGNRSKDRRFEMGE-ISSNLADYTI 400 Query: 406 LSGFHVL---------ALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + R + +GD++++ K Sbjct: 401 VTSDNPRFEEPQDILNDIVVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKG 458 >gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas sp. SN2] Length = 530 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 73/502 (14%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 +A+ P + G+++DSR + + AF A+KG DG DFI A+ GA +++ Sbjct: 11 RALLAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQ 70 Query: 72 TDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEM 125 TD + G + + + + + L+ LA A + +A+TG+ GKT+T ++ Sbjct: 71 TDDSQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQL 130 Query: 126 LTIALSSIKKT---------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167 LT ++ + P + V +F E+ Sbjct: 131 LTQLKDALGTRSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHT 190 Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI------------ 213 S ++ V+ IAV T + HL +EE A AK + Sbjct: 191 AFEASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLN 250 Query: 214 -----FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY--------SFGKSKNADFQL 260 + D S E+ +K + T + + + ++ Sbjct: 251 VNDSESQNWADYLDANAAKDGSSEEIAISKPRVTRVWTGFEPTDDVLATHKQPQDRHCFA 310 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 S ++ + + G N L + + + ++ ++ Sbjct: 311 TNVSYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVVRVVNGL 370 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P GR + + + + +A VL H G+ V G Sbjct: 371 QPVPGRMEVFPVGGSASVIVDYAHTPDA-------LEQVLKSAKTHTAGKVWCVFG---- 419 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMD 431 G L + + + ++ + +K L R + Sbjct: 420 CGGDRDKGKRPLMGAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRE 479 Query: 432 GLFLFIQSSLVDGDVVVV--KS 451 + S + D+++V K Sbjct: 480 SAIRYCLDSADENDIIIVAGKG 501 >gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Serratia odorifera DSM 4582] gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Serratia odorifera DSM 4582] Length = 471 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 72/453 (15%), Positives = 139/453 (30%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 ++DSR A + F A+ G DG +I A+ +G V+ + A+ G + +PV Sbjct: 2 TLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK--------- 135 + + L+ LA L+ + ++ +TG+ GKTTT ++L + + Sbjct: 62 YLSQLNQRLSALAGRFYLQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETAAVMGTVG 121 Query: 136 -----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + + + + +S G ++ + AV T Sbjct: 122 NGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAAVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL + +AK +F G E I DD L A+ + + Sbjct: 182 NLSRDHLDYHGDMASYEAAKWSLFAGHEVGQAIINADDDVGQRWLAQLPDAVAVTMQGNL 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + E+ +G N+L+ L + L Sbjct: 242 QPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSLGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K+ S P GR + + + +A L+ H +G Sbjct: 302 LAALLKSGSQLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALAAARLHCQG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ V ++ + + L Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 DVV+V K Sbjct: 411 PGRALVIHGRAEAVTSAVMQAKQQDVVLVAGKG 443 >gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 518 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 139/475 (29%), Gaps = 44/475 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + F + L + + P+ V + DSR F ++G D H F+ + Sbjct: 22 MAKFSEWLDGLDYELLHGDPEKVEVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVIA 81 Query: 63 KGAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115 +G +VV + L I V V AL KL A + +IA+TG Sbjct: 82 EGTEAIVVEEESSMLPVDLREIYEGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVTG 141 Query: 116 SVGKTTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTL-----ARMPVDVD 161 + GKTTT M+ L S ++ P + R D Sbjct: 142 TKGKTTTAHMIRSILESAGESCGLIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADRG 201 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 G + S G + T + + T I P H+ E + Sbjct: 202 CGYVVMEASSQGFKLYRTDAIDFDYGIFTNIEPDHIGP-----NEHKDFEEYKYYKSRIF 256 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + A +Y FG K+ADF + + ++ + Q M Sbjct: 257 RQSRVGLINRDSPYAEELIAGAKCRMYCFGIDKSADFMAEGIQAVNSPDFVGSEFQVIGM 316 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + N+ + +S+ + L G+ N + Sbjct: 317 AKLDVRLNLPGKYNVYNAMAAISVCSLIGIRNSAILKALRLIRVNGRMELAFKNDTMSVI 376 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++NA ++L + + R + V G G S+ + E + Sbjct: 377 VDYAHNA-----MGMENLLETLREYHPKRLVVVFG---CGGNRSKERRYGMGETAARLAD 428 Query: 402 SHVWLSG----FHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447 V + + + + + GD++ Sbjct: 429 FSVLTADNSRFERTEDIISDIKSRLVPLGGRYAEIPDRREAIEYAMKNAEKGDII 483 >gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787] gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787] Length = 493 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 80/478 (16%), Positives = 156/478 (32%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + LL+ ++ + + ++ DSR + F I G DGH+F+ ++K Sbjct: 1 MMKLTKLLERLEYKVVQGNDDIEITELTNDSRRVCAGSVFVCISGAVVDGHEFVKEVLEK 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTT 121 GA V+V ++ A + V V+D AL A + +I ITG+ GKTT Sbjct: 61 GAKAVIVEKEVKAPEH---VTVIKVEDTRYALALASAAYFGYPAEQLKVIGITGTKGKTT 117 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167 T M+ L + IG+ IG R VD + Sbjct: 118 TTYMVKSILEGVGHKVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKMVDAGCDAVVM 177 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225 +S G + T + I + T + H+ E+ K + Sbjct: 178 EVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLL-------FKQCR 230 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + I +FG ++ AD + K S ++ V + Sbjct: 231 IGIANVDDPYFEDVFRGATCQIETFGFAQKADLRAADTKLVSRPGYLGVSYHVSGLMDFD 290 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 I ++ +L +++ + +G+ +++ F +ID + Sbjct: 291 VEIDIPGTFSVYNSLTAIAVCRHFDVPVEMIKKALKVAKVKGRIEMVKVSEDFTLMIDYA 350 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +NA + S+L+ + + R + + G G +++ ++ EV + Sbjct: 351 HNA-----MSLESLLTTLKEYHPKRLVCLFG---CGGNRAKARRYEMGEVSGKLADLTII 402 Query: 406 LSGF----------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + + +V + GDV+V+ K Sbjct: 403 TSDNPRFEEPQDIIDDIKIGIGKTDGKYVEIC-DRKEAIRYAVDHAEVGDVIVLAGKG 459 >gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 547 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 154/500 (30%), Gaps = 62/500 (12%) Query: 2 NPLWT-FHDLLQAIQGH--SIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 NP +T DL I IG G V G+ + ++++ + F A+ G H G +F Sbjct: 22 NPPFTALTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEF 81 Query: 57 ILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KA 108 + A+ GA V+ + VA + S+PV D L + + Sbjct: 82 VSVAIAAGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHM 141 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLT 152 II ITG+ GKTTT ++ L++ T +G+ + L Sbjct: 142 QIIGITGTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALF 201 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 A +D + E+ SH + + VR I T ++ HL ++ +AK+ Sbjct: 202 AAMRERGIDTVVMEV-SSHALALGRV-DGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSR 259 Query: 213 IFEGLEKTGTIFLNYDDS-----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 +F + +H + + AD+ Sbjct: 260 LFAADSAVCAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSD 319 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + N+ +I + AL+ + G Sbjct: 320 TGNQVFTLTG-PDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDVPG 378 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + R Q F ++D ++ V++ + +GR V+G G Sbjct: 379 RVERVERGQDFLAVVDYAHKPAALEA-----VIATLRGQTKGRIAVVVGA----GGDRDR 429 Query: 388 FHIDLAEVLSLYNISHVWLSG-----FHVLALKD-------ALPRSIHVHYSE--TMDGL 433 L + ++ A++ A+P + E Sbjct: 430 GKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGEVREIGDRADA 489 Query: 434 FLFIQSSLVDGDVVVV--KS 451 GDVV+V K Sbjct: 490 IAAAVRWARTGDVVLVAGKG 509 >gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] Length = 482 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 161/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL + D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + +Y++ +DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] Length = 516 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 77/479 (16%), Positives = 137/479 (28%), Gaps = 43/479 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL QA+ G G G V G ID+R++ E F A+ G H G F A +GAG Sbjct: 22 VTDLAQAVGGTVHGDG--GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAG 79 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + +A + L IP V DV + A A + + + +TG+ GKTTT Sbjct: 80 AVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTY 139 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFEL--GMS 170 +L L + + +G+ +G P A V + + +S Sbjct: 140 LLRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVS 199 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + T ++ HL +E+ KA +F + + Sbjct: 200 SHALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGV- 258 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + L + G + + K + E Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGYTELRLRAFDGKEASVQVRMP 318 Query: 291 HMAQNMLMTLGI-----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + L I + + R L +I + Sbjct: 319 GTFNAINAALAIVMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD- 377 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + NP S K + + +GR + V+G + S + ++ + Sbjct: 378 FAHNPDSTKVLLDT---MRISTKGRLLLVMGADGQ----RDSGKRPILGQIAAELADFTY 430 Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 ++ G + + D VV+ Sbjct: 431 VTDGDIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITG-RG 488 >gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D12] gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] Length = 483 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 92/469 (19%), Positives = 159/469 (33%), Gaps = 47/469 (10%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +L+ ++ + G+ DSR IA F A++G DGH FI A+QKGA L Sbjct: 6 DKILEGLEYKVLQEPETNIFTGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARL 65 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM 125 V V+ ++ G I + ++ L LA + K I+ +TG+ GKTTT + Sbjct: 66 VFVSKEVSCQQG---IGYILIKNLRKHLGVLASNFYDWPQKKMKILGVTGTNGKTTTTYL 122 Query: 126 LTIALSSI-------KKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFE---LGMSHLG 173 L L + P L +M E + +S Sbjct: 123 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLIKMIKKAHDQGLEYIVMEVSSHA 182 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 +++ A+ T + HL +E+ AK ++F L G N DDS+ + Sbjct: 183 LELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKGIKIFNIDDSYGK 242 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 L + H + AD Q + + +E+ L G E +G Sbjct: 243 RLWEEFHGVSYG-------MNKADVQGKILAFEGGREEIELSLFGNKKECKIQILGGFNL 295 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L +L +V L + L GR + C + Y ++ Sbjct: 296 YNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDCGQDYMVIID----YAHTGDAL 351 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 + + + +I G+ I + G G + ++ V L+ + Sbjct: 352 ENILQAVQEIKS---GKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRT 404 Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + H+ E GD+V++ K Sbjct: 405 ENPESILEEVKSGFTKENHICILE-RAEAIAEGIRRANKGDMVLIAGKG 452 >gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum subsp. pallidum str. Chicago] Length = 540 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 68/487 (13%), Positives = 131/487 (26%), Gaps = 69/487 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I+ DSR++ FFA++G H G +I A+ GA +V D + + Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIV--HDCPLDTYVVGVYYA 83 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL+ A A T+I +TG+ GK++T + L K I + Sbjct: 84 RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143 Query: 145 NHIG---VPLTLARMP---------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 +G +P + +F + E L V + Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV + HL E+ KA +F L+ I F +L A+ + Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDASAVYFR 263 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME------------------------ 282 + ++ + Sbjct: 264 EATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQEPAQPA 323 Query: 283 ----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + + + + R + Sbjct: 324 QDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRVDMGQD 383 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 F ++ + Y P+S + + L+ + R + + G E + + ++ Sbjct: 384 FEVLID-YAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGE----RDTQKRAMQGAIAS 438 Query: 399 YNISHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + L+ A + + I S D+ Sbjct: 439 RYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQDL 498 Query: 447 VVV--KS 451 V++ K Sbjct: 499 VLLLGKG 505 >gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis M50/1] Length = 516 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 134/499 (26%), Gaps = 64/499 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ S+ + I S + F IKG + DGHD+I+ AV+ G Sbjct: 1 MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60 Query: 65 AGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 A VVV+ + + + + V GV D AL +++ A Sbjct: 61 AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120 Query: 106 S--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------- 156 K II ITG+ GKTTT + L +G+ + G + A Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180 Query: 157 -------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 V + +S G + I V I P H+ A Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP-GEHASFAEY 239 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----- 264 L + +N DD E + +A Q Sbjct: 240 LYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQKADIVAERIT 299 Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 E E + G N L + + D AL Sbjct: 300 FSMKEGRLYSHFFTDGKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVKDALQRQTVP 359 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 F + + + + ++L + GR + + G G Sbjct: 360 GR----CENVRISDKFVFLVDYAHNE----MSLRNLLGTLRGFDPGRLVVIFG---CGGN 408 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLF 434 S+ + E + S + D + I Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468 Query: 435 LFIQSSLVDGDVVVV--KS 451 + +GD++V+ K Sbjct: 469 AYAFDHAREGDIIVLAGKG 487 >gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] Length = 482 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 160/474 (33%), Gaps = 48/474 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170 +L + P+TL + D + +S Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVS 180 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + T + HL +E AK + F+ L K N DD Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDDK 240 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + +Y++ +DF+ R + E + L + E+ IG Sbjct: 241 NGLVMTQNIRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 A N+L G +L + + ALS HP GR R Y P Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHTP 348 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++ ++ + + G+G+ I V+G G + + V ++ + Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403 Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D L GDV++V K Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Corynebacterium jeikeium ATCC 43734] gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Corynebacterium jeikeium ATCC 43734] Length = 536 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 78/531 (14%), Positives = 139/531 (26%), Gaps = 75/531 (14%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + L + G G V +I S+ + F A+ G G F A Sbjct: 1 MTSLKQLAEICGGTLTGPWEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF---AADS 57 Query: 64 GAGLVVVNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 A V+ + + +P VD+V + +A + I ITG+ GK Sbjct: 58 KAAAVLTDAAGQRIIDDAPTPLPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFG-------IFE----- 166 TTT ++ AL IG+ G P+ + + + E Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S H V + T ++ HL +E+ AKA +FE E G Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVP-G 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + A+ K + + + Sbjct: 237 TAVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRL 296 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--------------SVFHPKEGRGKRYR 331 G + + ++G+ A +V + + Sbjct: 297 SIAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRM 356 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + +G L Y P +++A + L P R VLG G Sbjct: 357 QLVEEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGA----GGNRDHDKRA 412 Query: 392 LAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-------------VHYSET 429 + ++ V+++ + A+ + Sbjct: 413 IMGRIAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPD 472 Query: 430 MDGLFLFIQSSLVDGDVVVV------KSSNSCG-------FYRLINLLLEE 467 + GD VVV K G L L Sbjct: 473 RAEAIAAAVTWARPGDAVVVAGKGHEKGQLVAGKMHPFDDVEELATALKNR 523 >gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 464 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 88/470 (18%), Positives = 172/470 (36%), Gaps = 48/470 (10%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFF-------------- 44 M PL + +L G+ + + + + + F Sbjct: 1 MKPL-SVKNLAMITAGYLVHGSEDTLIQHGAYRLKQVKKSNTALFTSKRIVNWKSLEPLS 59 Query: 45 AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104 + ++V + S + + V + A K R Sbjct: 60 PL--------------------VLVTDRVYRPSDIPDHVMLIQVANAEEAYWKFVHFYRS 99 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + I+AITG+ GKTTTKEM+ LS+ +K A S N+ L + D + + Sbjct: 100 QFHIPIVAITGTSGKTTTKEMIKHILSADRKVTATTLSSNSRTASLQYLLGIEDDTEAAV 159 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 FE + G++ +P I +IT I HL+ +E AK E+ + + GT+ Sbjct: 160 FETAVGSPGDVTNAGRYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGTLI 219 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N +D K + + GK + DF+ + + KS +++ Sbjct: 220 INAEDMNT---KKIDVSRFRGRLIKVGKHDSCDFRASHIHYYQKGMKFILHHDRKSYDIL 276 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G G H N L + V + + A K+ + L+D+ Sbjct: 277 VPGFGEHQVYNALAAIAAVHDMGMPIPV---AAKQLQSFRLLKKQLQLFEGINHSMLLDD 333 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +++ S++AA+ VL+++ + IAV+G + ++G H E++ + + Sbjct: 334 TWSITTTSLEAALKVLNELGDGKKK--IAVIGTITDLGSWGYIIHEQAGELIQRIGVDVL 391 Query: 405 WLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 G H + D L S V+ + ++ +Q + + ++++K Sbjct: 392 ITIGEHARIMADHAVKLGFSAPVYTFKNSTLVYPLLQKIVDENTIILIKG 441 >gi|314934152|ref|ZP_07841513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] gi|313653057|gb|EFS16818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] Length = 210 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +G H +N + + I L +T ++ + G R T+ Sbjct: 33 SFTLPILGTHNMKNATIAIAIGHELGLSYETIKDNINH---VKLTGMRMERHQTTNNVTV 89 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 I+++YNA+P SMKAAI LS + EGR+I +L D+ E+GE SQS H ++ L+ I Sbjct: 90 INDAYNASPTSMKAAIDTLSSM----EGRKILILADVLELGENSQSMHEEVGAYLNNKTI 145 Query: 402 SHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460 ++ G + + + + L +++ + + D ++VK S + Sbjct: 146 EVLYTYGDEARFIFNTGQNEVTTAQHFDDKSELIKELKTIVKENDKILVKGSRGMKLEEV 205 Query: 461 INLLL 465 + L+ Sbjct: 206 VEALI 210 >gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 528 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 76/504 (15%), Positives = 153/504 (30%), Gaps = 99/504 (19%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+SI+S+++ ++ FFAIKG + DG+DFI A+ + A LV+ + I V Sbjct: 14 VKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKKNIVID----KVI 69 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V+DV AL + + + A+TG+ GK++ + S + K A IG+ Sbjct: 70 YVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTYSLLGKKTASIGTIG-- 127 Query: 147 IGVPLTLARMPVDVDFG---------------------IFELGMSHLGEIRFLTHLVRPH 185 G + DV S G + ++ + Sbjct: 128 -GEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSHGLDQARLGEIKVN 186 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--------------- 230 IA T+ + HL E AK ++F + Sbjct: 187 IACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTERRTAAYTSDRADS 246 Query: 231 --------------------------------FFELLKAKSHALGIKTIYSFGKSKNADF 258 E ++ L I K D Sbjct: 247 STGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNHNIKFITVGKKGDL 306 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ + + + + IG A N+L+ V D + I+ L+ Sbjct: 307 EITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVHYTGFDFNKIIEILT 366 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 P +GR +R ++ ++ +K + + V G Sbjct: 367 QVKPVKGRMERIDNTNIFVDYSHTPDALEKALTELKNI--------KLRDSKLSVVFG-- 416 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSET 429 G + ++ + ++ + + + ++ + + Sbjct: 417 --CGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADYTEIA-N 473 Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451 + + ++L D++++ K Sbjct: 474 REEAIKYGINNLKQDDILLIAGKG 497 >gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium cellulovorans 743B] gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium cellulovorans 743B] gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B] Length = 471 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 90/471 (19%), Positives = 174/471 (36%), Gaps = 44/471 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63 +T ++ + G + + S P F ++ FI + + Sbjct: 4 YTCDEISNLVDGIVLYWDNNKSIERFSS-----YPNCPLFRSL--------HFIKNHINN 50 Query: 64 G-----------AGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 ++++ + ++ S I V V ++ A + R + Sbjct: 51 KDNLISRLETYKVSGIIIDNCDLIDLKNLSSKGIGVILVKNLNKAYEDIVQLYRKQFDIP 110 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 + + GS GKTTTKEML L + T + N+ GV L ++ + E GM Sbjct: 111 FVQVIGSSGKTTTKEMLGSILRTKLNTLVSFENLNSPSGVAYNLLKLTAKHQAAVLETGM 170 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 G I T +++P ++T I AHL +E I AK+E L + +N DD Sbjct: 171 RSKGVISRSTSIIQPDYVIVTCIHRAHLVTVGSLENIIKAKSEFIGFLSPESLVIINGDD 230 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L + + +FG SK+ D ++ + + + + ++ + IG Sbjct: 231 ENCKKLPLDQYQGKV---LTFGMSKSCDIWAKEIQYDDFKMHFKACTRNLEIDCTINTIG 287 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + N L + + L + L F P R + F +I++++NAN Sbjct: 288 IYNVLNALAAIILSLNLGFSKQEIQEGLLQFKP---MYNRLQVVKRNKNFCIINDTFNAN 344 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDM----CEMGELSQSFHIDLAEVLSLYNISHVW 405 P S A + + + I VLGD + E +S H ++ + + + + Sbjct: 345 PDSTIALVEEIQNFAQ--GKPIILVLGDFENPNYQDTEYPESVHYEVGKKAASAMLYRLI 402 Query: 406 LSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 G +L + + + F++ S+V ++++ KSS Sbjct: 403 AIGKWADSLIKGAVDNGYPIKNTGCFTKPEYAIDFLKQSIVKNNIIIFKSS 453 >gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 503 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 69/467 (14%), Positives = 143/467 (30%), Gaps = 43/467 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + G+ +DSR+I F A+KG DG +I +A++KGA V++ + + Sbjct: 15 VFNNPTSPALTGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDIT 74 Query: 78 IGSL------SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIA 129 I IPV V+ + L+ +A + +I +TG+ GKTT +L Sbjct: 75 ISKKYSYHLNKIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARW 134 Query: 130 LS--------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175 + + + + V + +S G Sbjct: 135 VQLLGKKSAVMGTLGNGMLNNMCLSNNTTCSSIDAQKILSQFVKDKITFVAMEVSSHGLN 194 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 ++ + A+ T ++ HL + + + +K +F+ L I D L Sbjct: 195 QYRVDALYFKAAIFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVEKYIINADDPVGCRWL 254 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 A+ + + + K + + + +G Sbjct: 255 YYLPQAIAVTITRNLPFFWKGKWICALKVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVS 314 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L+ LG + IL + + S P GR + +R + +A + Sbjct: 315 NLLLALGTLLILGYPLSLLVHTSSQLQPVAGRMEVFRSHGYPTVIVDYAHTPDALEKVLI 374 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409 + G+ V G G L + ++ ++ Sbjct: 375 SIRQFYYW------GQLWCVFG----CGGDRDPSKRALMGCIVSRYADYIIITNDNPRTE 424 Query: 410 HVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + + R I + + DV+++ Sbjct: 425 EPQSIINDITRGITHRKKIIKIIQNRCCAIQTAILKASLEDVILISG 471 >gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium HF0010_08B07] Length = 385 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L Q + + + I DSR + F +KG +YD ++ ++KGA Sbjct: 9 SLRELSQILG--FENVQTDANIERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGA 66 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 V+ + S VDDV +L + +++K +I ITGS GKTT K+M Sbjct: 67 S-VITKQKIFGSS-------IVVDDVYSSLLDICANKLIKNKGKVIFITGSYGKTTIKDM 118 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L L +A + NN G+P T+ MP + ++ + E G ++G+ ++ + Sbjct: 119 LKSLLGDK--CHASKDNENNEFGIPFTILSMPKNTEYLVVECGARNIGDFDLISEKLYCD 176 Query: 186 IAVITTIAPAHLSNFSGIEEIASAK 210 + ++T IA HLS F IE I+ K Sbjct: 177 VFILTAIASNHLSTFKNIENISKTK 201 Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428 I VLGDM E+GE H ++ L+ + I +L+G + + + ++++ E Sbjct: 290 NNTILVLGDMAELGEDENKKHENVLNHLADFQI---FLTGKIFKEVSKKIF-NKNLNFFE 345 Query: 429 TMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++ L G V K S S + LL+ + Sbjct: 346 NKQDFPKNYLIKQLKAGKKVYFKGSRSSKMETYLELLIND 385 >gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 502 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 66/460 (14%), Positives = 151/460 (32%), Gaps = 44/460 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--- 81 + GI++ S + + F AI G DG +I A+ +GAG ++ + V + Sbjct: 28 ITIKGITLKSDEVTTGDLFVAIVGHETDGRHYIPQALSQGAGAILAEAEGVVNDDVSVDQ 87 Query: 82 --SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK--- 134 +P+ + ++ L++LA + ++ ITG+ GKTT ++L ++ Sbjct: 88 IQGVPIVYLFNLNQYLSQLAGEFYHHPASQLNLVGITGTNGKTTNTQLLAQWTMALGEVS 147 Query: 135 -----------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + + + + + + +S ++ + Sbjct: 148 AVLGTLGNGLLRQLSSNQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALP 207 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +V + ++ HL + AK +F E I D+ L +A+ Sbjct: 208 FAASVFSNLSRDHLDYHGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVA 267 Query: 244 IKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + T + + +K + + + E+ +G N+L+TL Sbjct: 268 VSTSHQIPSGLQGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLAT 327 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + L +D +KA S P GR + ++ + +A L+ Sbjct: 328 LLALKYPLDALLKAASKLQPIPGRMEVFKKVGRPTVIVDYAHTPDA-------LKQALAA 380 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413 H +G+ + G G L ++ + ++ + Sbjct: 381 SRMHCQGKLWCLFG----CGGDRDKGKRPLMGKIAETLADQMVITDDNPRTESPKMITAD 436 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + I + + DV+++ K Sbjct: 437 ILKGVLKTDRASVIQDRTEAITHILNQAMPEDVILIAGKG 476 >gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] Length = 486 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 77/470 (16%), Positives = 137/470 (29%), Gaps = 57/470 (12%) Query: 15 QGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 +G ++GIS D+R+I P E F A+ G DGH F+ AV+KGA V+ + Sbjct: 9 GVALLGGFADEDVEISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICHK 68 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA- 129 P D AL ++ R + T+I +TG+ GKTTT +L Sbjct: 69 APEEPG-----PWLIAADTRAALAAVSANWFGRPADELTVIGVTGTNGKTTTTYLLKAML 123 Query: 130 ---------LSSIKKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLG 173 L + H P + + E+ SH Sbjct: 124 EGVLGAKVGLMGTNQNMIGEKVIPAHRTTPESWEVQKLLRDMADSGCTHVVMEV-SSHAL 182 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + + + + + T + HL +EE K +F + ++ Sbjct: 183 ALHRVDGIA-FQVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQTGTAVLNLDDEAGRYYA 241 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + + AD + + ++ E G V G Sbjct: 242 SIV------TCPALTYSENKDQADVTAKNIRLFPDRVEFEALTTGAIARVRLPIPGGFTI 295 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L + L + +L+ +GR + + + +A Sbjct: 296 YNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVPTPTDYAVIIDYAHTPDA----- 350 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408 ++L+ + GR I + G G + ++ V L+ Sbjct: 351 --LENILTTVRDFTPGRVICLFG----CGGDRDRSKRPVMGAIAAELADLVVLTSDNPRT 404 Query: 409 FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + GD VV+ K Sbjct: 405 EDPEAILADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKG 454 >gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] Length = 508 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 70/457 (15%), Positives = 154/457 (33%), Gaps = 41/457 (8%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLS 82 ++GI DSR IA F A+ G DG D+I AV GA V+V + + Sbjct: 27 IELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYIAQAVANGAAAVLVERAGHSADKLNYPN 86 Query: 83 IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P+ V+++ L+++A +I+ +TG+ GKT+ ++ + + ++ I Sbjct: 87 VPIIAVENLNLKLSEIAGRFYNNPSHELSIVGVTGTNGKTSCTQLYMQIANLLGRSCGVI 146 Query: 141 ------GSYNNHIGVP--------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + G+ + D + + + +S G + V+ + Sbjct: 147 GTLGAGIDGQLNEGLNTTPDAISIQKILAEWRDHELAVAAMEVSSHGLEQGRVADVQFEL 206 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFELLKAKSHALG 243 A+ T ++ HL + KA +F + ++ + + + A + + Sbjct: 207 ALFTNLSRDHLDYHGSMLAYGETKARLFRQPGLKCAVINIDDHFGCALVDEMPATTDVIR 266 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + +AD + + + S+E+ +G N++ + Sbjct: 267 YGVEPDARTNHSADVWVDNVRFHPSGVNARLHSDWGSVEINSPLLGEFNLSNLVAVICCF 326 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + + + GR +R + + + + L + Sbjct: 327 GLQGFALSSIANVIPKLMTVPGRMERIVSSADITVVVDYAHTPDG-------LEKALLAM 379 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDAL 418 H +G+ V G G L L + HV ++ + + D + Sbjct: 380 RQHTDGKLWCVFG----CGGNRDHGKRPLMGALVQRHADHVVVTSDNPRNESAAEIIDEI 435 Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E F ++ + GD V++ K Sbjct: 436 LGGVDRPSMVEEDRGLAIQFAIANALPGDCVLIAGKG 472 >gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] Length = 482 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 93/475 (19%), Positives = 165/475 (34%), Gaps = 50/475 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++LL+AIQ + + G++IDSR + + F A++G DGH +I A+ KGA Sbjct: 3 LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 ++ + I V D A+ K+A SK ++ +TG+ GKTT Sbjct: 63 AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169 +L I + N+I + L RM + + + + Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV-FMEV 179 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + ++ + T + HL +E AK + F+ L K N DD Sbjct: 180 SSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDD 239 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ++ + + +Y++ +DF+ R + E + L + E+ IG Sbjct: 240 KNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIG 291 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 A N+L G +L + + ALS HP GR R Y Sbjct: 292 KFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHT 347 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 P ++ ++ + + G+G+ I V+G G + + V ++ Sbjct: 348 PDALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSD 402 Query: 410 HVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L GDV++V K Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457 >gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] Length = 476 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 80/452 (17%), Positives = 146/452 (32%), Gaps = 45/452 (9%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 G+ S ++ P + F A+ G DG FI AV +GA VVV+ + VA + + Sbjct: 17 TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGAR-VVVHKEGVAVAPAAGVSTLA 75 Query: 88 VDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI--------KKTY 137 V + L LA AA I+ +TG+ GKTTT ++ LS+ Sbjct: 76 VPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIGTVHC 135 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITT 191 + G+ + + + + + +S + T + + V + Sbjct: 136 SWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQERTAGLPMAVGVFSN 195 Query: 192 IAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +E AK+ +F +G + +N DD + LK L + S Sbjct: 196 LTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRLKMMRPDLLGFGLDS- 254 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 ++A+ + R +E + + G + E+ +G H A N+L +G +L Sbjct: 255 ---EDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVGAGLLLGLTA 311 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + F S+ + G R Sbjct: 312 AQCACLSQALGAPGRLERVPNTRELNIFIDYAHTPDALEKVSV--------ALKSMGFKR 363 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421 I V G G + L + ++ + ++ L + Sbjct: 364 LITVFG----CGGDRDASKRPLMGAAVARHADVAVVTSDNPRTEDPESILDQIEPGLAGA 419 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V S+ GD +++ K Sbjct: 420 RLVLREVDRRKAIALAVQSMQPGDALLIAGKG 451 >gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. B14905] Length = 497 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 156/388 (40%), Gaps = 11/388 (2%) Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 ++V + + I + V +V A + R + I+AITG+ GKTTTKEM+ Sbjct: 95 VIVTDRAYRPNDIPTQIIIIQVANVDEAYWRFVHFYRNQFHIPIVAITGTSGKTTTKEMI 154 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 LS+ ++ A S N+ L + D + +FE + G++ +P I Sbjct: 155 KHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAVGSPGDVTNAGKYFKPTI 214 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT I HL+ +E AK E+ + ++ GT+ +N +D + L + Sbjct: 215 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAEDMNTKKL---DISKFNGR 271 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + G + F+ + + ++ K ++ G G H N L + + Sbjct: 272 VLKVGIHDSCHFRASHIQYYQKGMNFKLHHIRKIYDIFVPGFGQHQVYNALAAIAAAYEI 331 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A + K+ + L+D++++ S++A + VL+ + Sbjct: 332 GVPIPV---AANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSLEAGLKVLNDLGEG 388 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSIH 423 + IAV+G + ++G H E++ + + G H + D L + Sbjct: 389 KKK--IAVIGTITDLGSWGYIIHEQAGELIHRIGVDVLITIGEHARIMADHAVNLGFNAP 446 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 V+ + ++ +Q + + +V++K Sbjct: 447 VYTYKNSTLVYPLLQKIVDENTIVLIKG 474 >gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate ligase mure [Rhodococcus equi 103S] gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 547 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 154/500 (30%), Gaps = 62/500 (12%) Query: 2 NPLWT-FHDLLQAIQGH--SIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 NP +T DL I IG G V G+ + ++++ + F A+ G H G +F Sbjct: 22 NPPFTALTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEF 81 Query: 57 ILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KA 108 + A+ GA V+ + VA + S+PV D L + + Sbjct: 82 VGVAIAAGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHM 141 Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLT 152 II ITG+ GKTTT ++ L++ T +G+ + L Sbjct: 142 QIIGITGTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALF 201 Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 A +D + E+ SH + + VR I T ++ HL ++ +AK+ Sbjct: 202 AAMRERGIDTVVMEV-SSHALALGRV-DGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSR 259 Query: 213 IFEGLEKTGTIFLNYDDS-----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 +F + +H + + AD+ Sbjct: 260 LFAADSAVCAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSD 319 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + + N+ +I + AL+ + G Sbjct: 320 TGNQVFTLTG-PDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDVPG 378 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 + R Q F ++D ++ V++ + +GR V+G G Sbjct: 379 RVERVERGQDFLAVVDYAHKPAALEA-----VIATLRGQTKGRIAVVVGA----GGDRDR 429 Query: 388 FHIDLAEVLSLYNISHVWLSG-----FHVLALKD-------ALPRSIHVHYSE--TMDGL 433 L + ++ A++ A+P + E Sbjct: 430 GKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGAVREIGDRAEA 489 Query: 434 FLFIQSSLVDGDVVVV--KS 451 GDVV+V K Sbjct: 490 IAAAVRWARTGDVVLVAGKG 509 >gi|99036017|ref|ZP_01315056.1| hypothetical protein Wendoof_01000094 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 163 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%) Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 AL F +GRG ++ N+ + LID+SYNA+PASMK AI LS S + +A+L Sbjct: 14 ALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRK---VALL 70 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435 GDM E+G+ S FH DL ++++ NI V+ G +L L + LP +I + + L Sbjct: 71 GDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLKS 130 Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 + + + + D ++VK S ++ + ++ Sbjct: 131 DLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 163 >gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nostoc punctiforme PCC 73102] gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC 73102] Length = 500 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 72/481 (14%), Positives = 148/481 (30%), Gaps = 47/481 (9%) Query: 5 WTFHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +LL A+ S + V G+ +S + + F + G DG +F A Sbjct: 1 MKLRELLTAVDSVEQLASHPTLEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFWQSA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 + GA +V+ + + V ++ A ++A A + + + Sbjct: 61 IASGAVAAIVSPEAAQKNPPTNEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTN 120 Query: 120 T-----------TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-------ARMPVDVD 161 K L AL T P + + + Sbjct: 121 GKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEAVNAGSE 180 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 FG+ E+ SH + + +AV + + HL +E+ +AKA +F G Sbjct: 181 FGVMEV-SSHALAQGRVLGC-QFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPDYLKG 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DDS+ + L A + + + +AD + + + Sbjct: 239 RAIINADDSYGKRLIASLDSERVWSY--SVNDNSADLWMSDLSYEPNGVSGILHTPKGDV 296 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +G + +N+L +G L D+ + F GR +R + +Q + Sbjct: 297 AFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDISVI 356 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + ++L P G+ I V G G + ++ Sbjct: 357 VDYAHTPDSLE-----NLLKAARPFIPGKVICVFG----CGGDRDRTKRPIMGRIAAELA 407 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ + + + +++ GD V++ K Sbjct: 408 DVAVVTSDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGK 467 Query: 451 S 451 Sbjct: 468 G 468 >gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium striatum ATCC 6940] gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium striatum ATCC 6940] Length = 521 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 73/477 (15%), Positives = 145/477 (30%), Gaps = 40/477 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L G IG V+ S+DS++IA F A+ G G F A Sbjct: 5 LQTLATIGGGRVIGDD-SVTVSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTE---AA 60 Query: 67 LVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 ++ + + + P+ V+D+ L +A T++ +TG+ GKTTT Sbjct: 61 AILTDEAGLQHLQEAGERRPIIVVEDIRAVLGLIAAEIYEHPTEHLTVLGVTGTSGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLT- 179 +L L IG+ I ++ + EL M H G + Sbjct: 121 SYLLEAGLLHAGHKVGLIGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVVME 180 Query: 180 -----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + T ++ HL +E+ +AKA +F+G + + D Sbjct: 181 VSSHALELGRVRGTQFDVGGFTNLSQDHLDFHPTMEDYFAAKAALFDGAQAASAAVICVD 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + + + + + + + + + Q S + Sbjct: 241 DDWGKRMAQQVAGKPLTLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGETYSF 300 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 M + ++ A + + ++++G + Y Sbjct: 301 ELPMPGKFNIANAALAAGMAAAVGVDTETFLNGVERVAVPGRMESISRGQDFVAVVDYAH 360 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 PA++ A + L GR V+G G S L + V ++ Sbjct: 361 KPAAIAAVLDTLRGQLSETGGRLGVVVGA----GGDRDSSKRPLMGAAAAERADLVVVTD 416 Query: 409 -----FHVLAL-------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ ++ + + + GD ++V K Sbjct: 417 DNPRSEDPAAIRAAVMAGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKG 473 >gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya sp. PCC 8106] gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya sp. PCC 8106] Length = 508 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 82/486 (16%), Positives = 148/486 (30%), Gaps = 53/486 (10%) Query: 5 WTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +LL + P + V G++ +S + + F + G DG DF A Sbjct: 1 MKLKELLAKV-ADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDFWPSA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLS-----IPVFG--VDDVLGALNKLAVAA-RLRSKATIIA 112 + GA +V+ S +P V+ A + ++ Sbjct: 60 IANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQLKLVG 119 Query: 113 ITGSVGKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTL-------ARM 156 +TG+ GKTTT ++ L T P + + Sbjct: 120 VTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKLAEAV 179 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 +G+ E+ L + R L +AV T + HL +E+ AKA +F Sbjct: 180 KAGCQYGVMEVSSHALHQGRVLECP--FDVAVFTNLTQDHLDYHQTMEDYFEAKALLFSP 237 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 G +N DDS+ + L + A + + AD + + Sbjct: 238 QYLQGRAIINADDSYGKRLIERLEADRVWSY--SINDSTADLWAAQLSYEPNGVKGVLHT 295 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 +G + N+L +G L D+ T + L F GR +R + + Q Sbjct: 296 PQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQ 355 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++D ++ + ++L P GR I V G G + Sbjct: 356 DVSVIVDYAHTPDSLE-----NLLKASRPFIPGRMICVFG----CGGDRDRTKRPKMGKI 406 Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + V ++ + + + I + GD V Sbjct: 407 AADLADVVVVTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGV 466 Query: 448 VV--KS 451 ++ K Sbjct: 467 LIAGKG 472 >gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus G9842] gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus G9842] Length = 491 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 79/477 (16%), Positives = 151/477 (31%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H LL + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E +++ D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 459 >gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 464 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 145/472 (30%), Gaps = 60/472 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + + + G+ ++++S P + F A++G G D+I A+ KG Sbjct: 1 MNISQLL----ANIVQTKIDIEIKGLCLNAQSTQPGDLFIALQGKLTHGADYINQAIDKG 56 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123 ++V++ + + IP +D++ L LA K II+ITG+ GKT+ Sbjct: 57 CVAILVDSKEIECV----IPSIRIDNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVA 112 Query: 124 EMLTIALSSIKKTYACIGSYNNHI-------------GVPLTLARMPVDVDFGIFELGMS 170 ++ L+ + IG+ + L + S Sbjct: 113 YFISQLLTKLGIKNGLIGTLGITHSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSS 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 H + A+ T + HL +++ + K ++F I D Sbjct: 173 HALTQDR-IAGLNIKQAIFTNLTQDHLDYHHTLDKYQATKEKLFVLDTVESVILNQDDSH 231 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + L + YS G + + + + +G Sbjct: 232 YKHFL--NITKDKKRISYSLGDFDSIKTIEQGFLVQLD-----------HYVFEIPFLGE 278 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L L V L D I P GR +R L + ++ Sbjct: 279 FNLLNILAALNSVEALGFKRDDIIPLFYQLLPPPGRMQRIEPHLAWIDYAHTPDAIGNAI 338 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 ++K G G G + ++ ++ S + L+ + Sbjct: 339 TTLKKHYPNFKIRIVFGCG------------GNRDKDKRAEMGKIASNL-ADTIILTNDN 385 Query: 411 VLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S + E ++L + + +++ K Sbjct: 386 PRSENPKTIIENILSGIDDSYKLDIIENRQLAIETAITTLKENECLLIAGKG 437 >gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] Length = 503 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 96/485 (19%), Positives = 162/485 (33%), Gaps = 53/485 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DL+ + ++ + GI+ DSR + P F AI+G YDGH FI AV + Sbjct: 1 MVNLKDLIAVLPEKTVTGPVDRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQEAVAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTT 121 GA VV +P V AL LA A A ++ + TG+ GKTT Sbjct: 61 GAAAVVGERAPAVE----GVPYVQVPSSRTALGLLASAFYGHPSARLVLVGVTGTNGKTT 116 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDV-------------DFGIF 165 T ++ L + IG+ +N IG +P+ + Sbjct: 117 TTHLVRWVLEAAGHPTGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHVVM 176 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH ++ + + V T + HL + +E+ A+AKA +F L + Sbjct: 177 EV-SSHALTLQRVAGCA-FDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGT 234 Query: 226 NYDDSFFELLKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 ++ A + ++G + AD R + + Sbjct: 235 VKPGPKAAVINADDPWGTFMADRSSAPVITYGIRQAADVTARDVVVEPGGVRFVLGTRDG 294 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + V G N L G L D T + L GR F Sbjct: 295 EVPVRLRLTGRFNVYNALAAAGAGLALGIDPATVARGLESLPAVPGR---LERIDRGQPF 351 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T++ + Y P ++ +S + +++ G+GR + V G G ++ Sbjct: 352 TVLVD-YAHTPDGLENVLSTVREMA--GQGRVLCVFG----CGGDRDRGKRPQMGAIAAR 404 Query: 400 NISHVWLS-----GFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVV 448 + L+ A+ D + + + GDVVV Sbjct: 405 LADYTVLTSDNPRSEDPEAIIDDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVV 464 Query: 449 V--KS 451 + K Sbjct: 465 IAGKG 469 >gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ACICU] gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6014059] gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ACICU] gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase [Acinetobacter baumannii ATCC 17978] gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2] gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii TCDC-AB0715] gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6014059] Length = 499 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 81/465 (17%), Positives = 151/465 (32%), Gaps = 57/465 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 PQ +G S+DSR + + F A+ + F A+ GA V+ T++ + Sbjct: 18 PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134 + DV + + ++ IIA+TG+ GKTT ++ L S + Sbjct: 76 E------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179 + + + +P D+ L S G + Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV + ++ HL +E A AKA +F+ + D ++K+ Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248 Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++ ++N D+ + + + Q S V +G+ +N++ Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++AL F PK + + + + A I Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 VL + H + AV G G L +L + V L+ + Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461 >gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi] Length = 523 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 68/487 (13%), Positives = 132/487 (27%), Gaps = 69/487 (14%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V+ I+ DSR++ FFA++G H G +I A+ GA +V D + + Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIV--HDCPLDTYVVGVYYA 83 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D AL+ A A T+I +TG+ GK++T + L K I + Sbjct: 84 RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143 Query: 145 NHIG---VPLTLARMP---------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 +G +P + +F + E L V + Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV + HL E+ KA +F L+ I F +L A+ + Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDASAVYFR 263 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQ----------------------------LQG 278 + ++ + Sbjct: 264 EATHKPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTVQEPAQPA 323 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + + + + + R + Sbjct: 324 QDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRVDMGQD 383 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 F ++ + Y P+S + + L+ + R + + G E + + ++ Sbjct: 384 FEVLID-YAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGE----RDTQKRAMQGAIAS 438 Query: 399 YNISHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 + L+ A + + I S D+ Sbjct: 439 RYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQDL 498 Query: 447 VVV--KS 451 V++ K Sbjct: 499 VLLLGKG 505 >gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 506 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 85/484 (17%), Positives = 166/484 (34%), Gaps = 55/484 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN +T + + + + ++ ++ DSR + AF I G +DGH F+ A Sbjct: 1 MNIDFTQQE---QLGIKRLWGQTKRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLR--SKATIIAITG 115 ++ GA ++ + V P V+D L +L++ R T I +TG Sbjct: 58 IRNGAAVLAGESAEVLEKAGRKYPDRTFILVEDARAFLAQLSILFYKRAHENLTTIGVTG 117 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARM 156 + GKTT + L+ + IG+ + Sbjct: 118 TNGKTTVTAYVKSLLTLLGTPTGSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFK 177 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 + + E+ S + ++ + IA+ T ++P HL E AK ++F+ Sbjct: 178 ERGDEAAVMEV--SSVSTVQKRVEGIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFK- 234 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + + D + + G YS K +AD + + +++ E++ Sbjct: 235 -QAKKAVVNIDDSGMAKDILKIH--SGDVLTYSLDKRSDADVKASNLRTIGHETFFELKF 291 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 Q +S V IG + N+L + + + AL+ EGR + N+ Sbjct: 292 QKESYIVRAPVIGDYNVANILAAVCTALHSGYSIHQILLALTSIEGPEGRFELLTEYGNR 351 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 AA+ L + E R+ VL + + S+ L Sbjct: 352 KIMLDYA--------HTPAALDNLLREVKKLEYNRLIVLITGIGLRDKSKM---PLMAET 400 Query: 397 SLYNISHVWLSGFHV------LALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGD 445 + +S H + + L P + +++ T L + + D Sbjct: 401 VEGRADEIVVSVDHPDFNDPDEIISNVLAGFSNPSADNIYTERTRAEAVLSALALSNEND 460 Query: 446 VVVV 449 +V++ Sbjct: 461 LVLL 464 >gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] Length = 508 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 74/464 (15%), Positives = 151/464 (32%), Gaps = 50/464 (10%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I + + G++ DSR ++ FFA+ G H++G FI A+Q+G+ ++V D+ Sbjct: 23 IIGSCEVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDI--DF 80 Query: 79 GSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 ++ VD ++ ++ A K II +TG+ GK++ + L S+ Sbjct: 81 YDSNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMG 140 Query: 135 KTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGIFELGMSHLGEI 175 I + G + +V++ I E L + Sbjct: 141 AKVGFISTVFLEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHGLDDR 200 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + +AV+T I+ HL ++ AK +F G + + Sbjct: 201 TSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHG---GFGIINMDDNH 257 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + +T K++ ADF + K + + E + G +N Sbjct: 258 FSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFEFYHNKIKYAARVNLTGSFNVEN 317 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ++ L +VS + + + + E R + F+LI + + A Sbjct: 318 VMAALIVVSQIMNVDISKLICKLIN--IESLYGRMQDINFGQDFSLIVDYAHTPGA---- 371 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----- 410 + + + R I+V G E L ++ + L Sbjct: 372 FLKMFPIFKRLAKKRLISVFGSAGE----RDILKRRLQGEIADEYSDVIILCDEDPRGED 427 Query: 411 -VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++D + + + + D+V Sbjct: 428 SMQIIRDIAEGIVTKTLNKDLFFIPDRKCAIEKAINIACSDDLV 471 >gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium jeikeium K411] gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium jeikeium K411] Length = 536 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 79/531 (14%), Positives = 139/531 (26%), Gaps = 75/531 (14%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + L + G G V +I S+ + F A+ G G F A Sbjct: 1 MTSLKQLAEICGGTLTGPWEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF---AADS 57 Query: 64 GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 A V+ + I +P VD+V + +A + I ITG+ GK Sbjct: 58 KAAAVLTDAAGQRIIDDATTPLPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFG-------IFE----- 166 TTT ++ AL IG+ G P+ + + + E Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S H V + T ++ HL +E+ AKA +FE E G Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVP-G 236 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + + A+ K + + + Sbjct: 237 TAVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRL 296 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--------------SVFHPKEGRGKRYR 331 G + + ++G+ A +V + + Sbjct: 297 SIAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRM 356 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + +G L Y P +++A + L P R VLG G Sbjct: 357 QLVEEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGA----GGNRDHDKRA 412 Query: 392 LAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-------------VHYSET 429 + ++ V+++ + A+ + Sbjct: 413 IMGRIAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPD 472 Query: 430 MDGLFLFIQSSLVDGDVVVV------KSSNSCG-------FYRLINLLLEE 467 + GD VVV K G L L Sbjct: 473 RAEAIAAAVTWARPGDAVVVAGKGHEKGQLVAGKMHPFDDVEELATALKNR 523 >gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia floridanus] gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia floridanus] Length = 499 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 84/489 (17%), Positives = 170/489 (34%), Gaps = 53/489 (10%) Query: 1 MNPLWTFHD-LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M L H+ ++ I G ++ I ++ G+ +DSR+I F AI+G + DG I Sbjct: 1 MFKLKQLHELIVPWISGINVKIP---YLTGLELDSRNINFGNLFIAIQGYNTDGRLHIDD 57 Query: 60 AVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATI 110 A+ GA ++ + IP+ + + ++ +A + Sbjct: 58 AINNGAVAILSESYNKSTFFIKKIVNNVEVIPIIYFNQLNKCISNIAGRFYDHPSLCLKL 117 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----- 165 I +TG+ GKTT +LT S + + A +G+ N GV + I Sbjct: 118 IGVTGTNGKTTITHLLTNWTSLLGERSAVMGTLGN--GVLSDINPSCCTTCSAIETQKIL 175 Query: 166 -----------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + +S G ++ + +A+ + I+ HL + I + AK +F Sbjct: 176 KQFVQSGVTFVAMEISSHGLDQYRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLF 235 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWME 273 L + D + L + S+A+ + + +S + + K + + Sbjct: 236 NELRVKNYVINVDDCVGYRWLLSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIV 295 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + + + +G N+L+ LG + I+ + + + S +P GR + C Sbjct: 296 FKSSWGNGFIHSQLLGEVNVSNILLALGALLIMGYSLKSLLYTGSKLYPVCGRLEVLSCL 355 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + + +A + A + +GR + G G L Sbjct: 356 NHPTVIVDYAHTPDALKKILIFAKHLC------NKGRLWCIFG----CGGNRDRSKRSLM 405 Query: 394 EVLSLYNISHVWLSG-----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDG 444 V++ +V ++ + D + S + E + S Sbjct: 406 GVIANRYSDYVIITNDNPRVEDPKLIIDDIICKIRNSEKLKIIEDRVYAINMVVSKACSD 465 Query: 445 DVVVV--KS 451 D V++ K Sbjct: 466 DFVLILGKG 474 >gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] Length = 497 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 152/450 (33%), Gaps = 38/450 (8%) Query: 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPVF 86 + DSR + P + F A +G + DG FI A+ GA V+ + D + ++P Sbjct: 24 KRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPADGFNWNPAWNVPNL 83 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK--------- 135 V + +A A T+I ITG+ GKT+ L A S + Sbjct: 84 AVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIGTVG 143 Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPHIAVIT 190 P + ++ + + +S G +F + V AV T Sbjct: 144 NGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATAVFT 203 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +EE ++KA + E +N DD+F L A +T+ Sbjct: 204 NLTRDHLDYHGSMEEYGASKARL-FHWEGLRHAIINADDAFGRELAAGIDRQRTQTVTYG 262 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + D + + + M V +E+ +G A N+L L + + Sbjct: 263 LE--QGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATL---CVNG 317 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A +V + R + ++ + Y P +++ A++ L++I P G Sbjct: 318 VALKDAAAVLSRIQPARGRMQRLGGGHEPLVVID-YAHTPDALEKALATLAEIRPAGNRL 376 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA-LPRSIH 423 V G G + ++ ++ + + + D Sbjct: 377 YC-VFG----CGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMGET 431 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 H + ++ GD+V+V K Sbjct: 432 GHVEADRAAAIRWAIAAARAGDIVLVAGKG 461 >gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 516 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 83/511 (16%), Positives = 149/511 (29%), Gaps = 63/511 (12%) Query: 10 LLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + VP V G+++ ++ + P + F A+ G G + A+++GA Sbjct: 18 LAAQVGAVLADRAAAVPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAV 77 Query: 67 LVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 V+ + VA +G + ++P G L LA T+I ITG+ GKTTT Sbjct: 78 AVLTDAAGVAEMGASASAVPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTSGKTTT 137 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ L + +T IG+ I L A VD + E Sbjct: 138 TYLVEAGLRAAGRTAGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVME 197 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIF 224 + SH + + + T ++ HL + + A AK + + Sbjct: 198 V-SSHALALGRVDGTG-FAVGAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVV 255 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + DD + ++ G I + A ++ + + Sbjct: 256 VCVDDEAGRAMAMRAMQGGAAAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHR 315 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 L ++IL A + +A G+ Q F L+D Sbjct: 316 VGIRLPGHYNVA-NCLVALAILDAVGVSPEQAAPGLLDTRVPGRMEEIDCGQDFLALVDY 374 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ R V G GE + + V Sbjct: 375 AHKPGALRAVLTSLAR------PGRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLV 424 Query: 405 WLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449 ++ G A++ + + V + GDVV+V Sbjct: 425 VVTDDNPRGEDPAAIRREILAGAAAGGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGK 484 Query: 450 ---KSSNSCG----FY---RLINLLLEEFPA 470 + G F L + L Sbjct: 485 GHETGQRAAGEVRPFDDRLELADALKARRGP 515 >gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 484 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 80/453 (17%), Positives = 135/453 (29%), Gaps = 45/453 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87 + DSR + P + F A+ G DG FI A + GAG++V +++ A+ + V Sbjct: 19 VRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVCRADSEEAAAAATAGCRVVH 78 Query: 88 VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 D AL +L A I+ +TG+ GKTT +L + +G+ + Sbjct: 79 HADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKLGVMGTVSY 138 Query: 146 HIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + A VD + E+ S + V A Sbjct: 139 RWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEV--SSHAIDQQRVCGVPFSGAAF 196 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL +E AKA +F L + D + + + Sbjct: 197 TNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTALSFGLQ 256 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G + + + L+ E+ +G A N+L + + D Sbjct: 257 KGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVALEMGID 316 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + AL F GR +R F + +A +VL + G Sbjct: 317 PEAFK-ALESFTGVSGRLERVENPQGLNVFVDYAHTPDA-------LENVLKALRDAGFE 368 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD----ALPR 420 R I V G G + L+ A+ L Sbjct: 369 RVITVFG----CGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLAD 424 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V L D +++ K Sbjct: 425 AKEVVVEVDRREATTRALGMLGKKDALLIAGKG 457 >gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa] Length = 487 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 74/455 (16%), Positives = 144/455 (31%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DS + P + F + G H DG I A+ KGA V + + Sbjct: 15 DLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDA 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R + + +S G + + IA Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AKA++ +N DD F L + + T Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPDLRCRVINLDDDFGRRLAGEEQDSELITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S + + + + G N+L +G + L Sbjct: 254 SLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLL--GRFNLSNLLAAVGALLGLG 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L GR +R + +A VL + PH Sbjct: 312 YPLGDILRTLPQLQGPVGRMQRLGGGGKPLVVVDYAHTPDA-------LEKVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R + + G G + L ++ V ++ + ++ Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + + +S DVV++ K Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455 >gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] Length = 508 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 162/471 (34%), Gaps = 47/471 (9%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNT 72 + GI+ +S+ I + F AIKG DGH +I A+ A +++ + Sbjct: 18 QLTKECLNIEIRGIAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKAAIIIYDNSADK 77 Query: 73 DMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128 + + + + V + L ++ I IAITG+ GKTTT +L Sbjct: 78 NFIKELEDKHTYVYFIAVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKS 137 Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARM---------PVDVDFGIFE-----LGMSHLGE 174 L + K A IG+ N IG + + E + S Sbjct: 138 VLEANKNKTALIGTIKNMIGKTEIKTNLTTPESIDLENIFDKALKKEVSHIVMEASSQAL 197 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSF 231 + A+ T I HL ++ AK ++F + K + + D+ Sbjct: 198 AMDRCDYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKNKKLAIVNIDTD 257 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + + ++G ++ AD+ + S+ + E +GK + V + Sbjct: 258 NFKQISNYIKKLGIKMVTYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSM--L 315 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+L +L +++ ++ K++ + G+ + F + Y+ P Sbjct: 316 GRFNILNSLSVLAYVSEYKLDIEKSIKAMRKVQVAGRFEIVTKEKHPFIAAVD-YSHTPD 374 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410 S++ + +++P I V G G + ++ L+ + Sbjct: 375 SLENILKEARKLNPKR---VIVVFG----CGGDRDRKKRPIMASIAEKYSDISILTADNQ 427 Query: 411 --------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++ + + + +F I+ + D+V++ K Sbjct: 428 RTEDINQIMNDIEKGFKNKDYKKIIDRKEAIFEAIKE-AKENDIVIIAGKG 477 >gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Herminiimonas arsenicoxydans] gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Herminiimonas arsenicoxydans] Length = 508 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 73/454 (16%), Positives = 137/454 (30%), Gaps = 41/454 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSRSI + F A G DG +I A+++GA ++ + ++P +D++ Sbjct: 28 DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEWNVPHLAIDNLR 87 Query: 93 GALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACI------GSYN 144 +A A T+ +A+TG+ GKT+ + L ALS + + A I + Sbjct: 88 ACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVGIFKH 147 Query: 145 NHIGVPLTLARMPVDVDFGIFEL-------------GMSHLGEIRFLTHLVRPHIAVITT 191 G D EL S +G + + V +A+ T Sbjct: 148 GEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMALFTN 207 Query: 192 IAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 HL + A + GL + + + T Y+ Sbjct: 208 FTRDHLDYHGDMAAYEAAKTMLFDWPGLRHAVVNLDDALGVRLVERLKRRQSGIGITGYT 267 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 AD L V N+ LGI+ IL A Sbjct: 268 LTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGIIGILLAK 327 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 ++ R + ++ + Y P +++ ++ L +++ G Sbjct: 328 GIALSNVVAAIEALTSVPGRMQQLGGAEAPLVVID-YAHTPDALEKTLATLREVANERGG 386 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420 V G G + + H+ ++ + + + Sbjct: 387 ALWCVFG----CGGDRDAGKRPQMGKAA-MAADHIIVTSDNPRHEEPASIIAQIVAGMDV 441 Query: 421 SIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + H E L+ DV+++ K Sbjct: 442 AKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKG 475 >gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 516 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 77/479 (16%), Positives = 136/479 (28%), Gaps = 43/479 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL QA+ G G G V G ID+R++ E F A+ G H G F A +GAG Sbjct: 22 VTDLAQAVGGTVHGDG--GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAG 79 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + +A + L IP V DV + A A R + + +TG+ GKTTT Sbjct: 80 AVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTY 139 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFEL--GMS 170 +L L + + +G+ +G P A V + + +S Sbjct: 140 LLRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVS 199 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + T ++ HL +E+ KA +F + + Sbjct: 200 SHALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGV- 258 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + L + G + + K + E Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318 Query: 291 HMAQNMLMTLGI-----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + L I + + R L +I + Sbjct: 319 GTFNAINAALAIVMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD- 377 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + NP S K + + +GR + V+G + + ++ + Sbjct: 378 FAHNPDSTKVLLDT---MRISTKGRLLLVMGADGQ----RDPGKRPILGQIAAELADFTY 430 Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 ++ G + + D VV+ Sbjct: 431 VTDGDIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITG-RG 488 >gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus chthonoplastes PCC 7420] gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus chthonoplastes PCC 7420] Length = 501 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 158/482 (32%), Gaps = 45/482 (9%) Query: 5 WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 HDLL+AI + GI +S + P F + G DG DF A+ Sbjct: 1 MKLHDLLRAIPNVVEMPNHPALDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFWQSAI 60 Query: 62 QKGAGLVVVN-----TDMVASIGSLSIPVFGV--DDVLGALNKLAVAA-RLRSKATIIAI 113 GA +++ P D + A + ++ + Sbjct: 61 ASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQLVGV 120 Query: 114 TGSVGKTTTKEMLTIALSSIK-----------KTYACIGSYNNHIGVPLTLARMPVDVDF 162 TG+ GKTTT ++ L+ + + + + P+ L + Sbjct: 121 TGTNGKTTTTHLIEFILTQAQRPTALFGTLYARWQGFSQTAVHTTPFPVELQQQLHSAVA 180 Query: 163 GIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 E + +S + +AV T + HL +E+ +AKA +F Sbjct: 181 AGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFNSDYL 240 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 G +N DD + + L K +T ++ +AD + Sbjct: 241 HGKAIINADDPYGKRLIEKV--GRDRTWSYSVQNPSADLYTSNLTYTLIGVKGTLHTPVG 298 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + +G + N+L +G V L D+ T + L+ F GR +R + +Q Sbjct: 299 DVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQLKPDQDIS 358 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D ++ + ++L P +GR I V G G+ ++ + ++ + Sbjct: 359 VIVDYAHTPDSLE-----NLLKAARPFIQGRMICVFG---CGGDRDRTKRPKMGKIGAEL 410 Query: 400 NISHVWLSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 V S + + + +P ++ GD V++ Sbjct: 411 ADVAVVTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGVLIAG 470 Query: 450 KS 451 K Sbjct: 471 KG 472 >gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii SDF] gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii] Length = 499 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 81/465 (17%), Positives = 151/465 (32%), Gaps = 57/465 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 PQ +G S+DSR + + F A+ + F A+ GA V+ T++ + Sbjct: 18 PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134 + DV + + ++ IIA+TG+ GKTT ++ L S + Sbjct: 76 E------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179 + + + +P D+ L S G + Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV + ++ HL +E A AKA +F+ + D ++K+ Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248 Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++ ++N D+ + + + Q S V +G+ +N++ Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++AL F PK + + + + A I Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 VL + H + AV G G L +L + V L+ + Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461 >gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum reducens MI-1] gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfotomaculum reducens MI-1] Length = 486 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 100/476 (21%), Positives = 163/476 (34%), Gaps = 52/476 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LLQAI +I P+ + GI DSR A F A+KG DGH +I +AV G Sbjct: 3 LKELLQAIPVITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAGVT 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 VV T++V + V D AL +A + + +TG+ GKTTT Sbjct: 63 AVVYETEIV---LPTGVTGVQVSDSRKALALMADQFYGHPSKKLSMVGVTGTNGKTTTTH 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169 ++ + IG+ +N IG + LA+M + G+ + + Sbjct: 120 LIAAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQMLDEGVKGVA-MEV 178 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S V +AV T I HL + +EE +AKA++F +N DD Sbjct: 179 SSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFT--TDIQYAIINADD 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 E LK +Y++G + AD + + + + + ++ G Sbjct: 237 PAAEELKKI----SRGKVYTYGIDQAADIRAKDIQVTARGVSFMASGPWGNHQLNLKLTG 292 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L L DT + AL GR + N + + Sbjct: 293 RFNVYNALAAYTTGMALGFGSDTVVSALEDVPGVAGRFELLDKGQNFAVVVDYAHTPDG- 351 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 ++L+ +GR I V G G + ++ ++ Sbjct: 352 ------LENILTTARQITKGRLITVFG----CGGDRDRTKRPIMGEIAARYSDVPVVTSD 401 Query: 410 HV------LALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451 + ++D + V E +GDVVV+ K Sbjct: 402 NPRTEEPQKIIQDVVEGVNRVIAPEDYLVLVDRREAINKAIELAQEGDVVVIAGKG 457 >gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 471 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 64/453 (14%), Positives = 134/453 (29%), Gaps = 43/453 (9%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86 +DSR A + F A+ G DG +I A+ +G ++ A+ G + +PV Sbjct: 2 VLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61 Query: 87 GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143 + + L+ LA ++ +TG+ GKTTT +++ + + Sbjct: 62 YLSQLNERLSALAGRFYNEPSDQLKLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVG 121 Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190 N +G + +S G ++ ++ +V T Sbjct: 122 NGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAASVFT 181 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 ++ HL +E +AK ++ I D+ L+ A+ + Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHHGQAIINADDEVGRRWLEKLPDAVAVSMEDRI 241 Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + + + + E+ +G N+L+ L + L Sbjct: 242 NPNCRGRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + +K P GR + + + +A L H G Sbjct: 302 MADLLKTSERLQPVCGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALEAARLHCAG 354 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420 + V G G L ++ ++ + + + Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDILAGMLD 410 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + E + DVV++ K Sbjct: 411 AGRARVVEGRAEAVTNAIMQAQENDVVLLAGKG 443 >gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] Length = 472 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 84/478 (17%), Positives = 170/478 (35%), Gaps = 63/478 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M F ++L+ + G++P+ + G S DSR I AF +KG DG +I A Sbjct: 1 MKSSNDFLEMLEELNPRLSGVLPEL-IYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVG 118 + KGA L++ ++IP +DD+ A LA IIA+TG+ G Sbjct: 60 LAKGARLLLCEE-----FLDVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDF 162 K++T ++ L+ + K+ A IG+ +G + + + ++ Sbjct: 115 KSSTAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEY 174 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E S G + + + + T ++ HL +E SAK +F+ + Sbjct: 175 VVLE--ASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDYDSKIK 232 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 I N DD++ + L+ + F + ++D Q+ + E + + Sbjct: 233 IV-NSDDAYGKRLRDSQTKV-------FSQDPDSDCQVLQNSVKLEGTECLLP------- 277 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 +G + N + +V + L++ G+ N G ++ Sbjct: 278 ---QLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKNNGAQVIV 334 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ V+ ++ + + V G G+ + + E + Sbjct: 335 DFAHAQEALE-----KVICELRKNCREKLSIVFG---CGGDRDPARRYGMGE--ASDLAD 384 Query: 403 HVWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L+ + + + D L + + L D +++ K Sbjct: 385 EVILTNDNPRSEDPQQIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKG 442 >gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH 391-98] Length = 491 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAEQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V D +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + E + Sbjct: 116 SHIIDEIMRAHGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRMVEENVNSAVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S R H +AV T + HL +EE A G Sbjct: 176 VSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + T+ ++G ++D + S + + +S ++ Sbjct: 236 AVLNNDDAATEAYIRSTAATVVTYGIDTHSDVMAKDIVMTSGGTTFTLVTPHESKKITMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N L + + T I L GR + +T+I + Y Sbjct: 296 LIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGR---FEVVDGGQDYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ ++ Q + +G ++G G + ++ +H L Sbjct: 352 AHTPDSLENVLTTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAGVATEYATHAIL 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E S DV+++ K Sbjct: 405 TSDNPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKG 459 >gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock3-17] gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock3-17] Length = 491 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 156/477 (32%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166 ++ + + IG+ N IG + T RM +V+ + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH + + +AV T + HL +EE A G Sbjct: 176 V-SSHALSLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G ++D + S + + +S+ + Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + + T I ++ GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGR---FEVVDGGQDYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ ++ Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLTTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAGVATEYATHA 402 Query: 405 WLS-----GFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ A+ D A + + + S D++++ K Sbjct: 403 ILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKG 459 >gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium cellulosolvens 6] gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium cellulosolvens 6] Length = 496 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 79/473 (16%), Positives = 148/473 (31%), Gaps = 42/473 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 LLQ ++ + + + DSR A F I G DGH F KGA Sbjct: 4 NLKTLLQGLEYEILQGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAPEVASKGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 ++V T + + V V++ AL ++ K I ITG+ GKTTT Sbjct: 64 AALIVETAVDV---PAGVTVVKVENSRRALALISAEWFDHPAKKLKTIGITGTKGKTTTS 120 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGM 169 M+ L++ IG+ G + + + + + E + + Sbjct: 121 YMVQSILNAAGHKCGLIGTIETITGKRVIPSPNTTPISYLVNEYFAEMVEAGLDSVVMEV 180 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + T + H+ + E+ A + ++ +N DD Sbjct: 181 SSQALKYDRVTGIHFDFGIFTNLGQDHIGP-NEHEDFEDYLASKKKLFDQCTIGIVNRDD 239 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 F+ + + ++T ++ + ++ V G Sbjct: 240 KLFDRIVEGAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQTEGLVNIPVEVDIPG 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L + + + +KA P+ R FTL+ + + Sbjct: 300 KFTVYNSLAAIAVCHHFGVTEEEIMKA----LPQARVKGRVEMVKVSDKFTLMIDYAHNA 355 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 A S+LS + + R + + G G + + EV + S Sbjct: 356 ----MALESLLSTLREYHPARLVCLFG---CGGNRDRERRFSMGEVSGKMADFTIITSDN 408 Query: 409 ---FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + I HY+ + + GD++V+ K Sbjct: 409 PRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIVLAGKG 461 >gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] Length = 499 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 69/457 (15%), Positives = 138/457 (30%), Gaps = 35/457 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 V + DSRS+ + F A G DG FI A+++GA V+ + S+P Sbjct: 14 VNVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWEEHGFKWNPTWSVP 73 Query: 85 VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V D+ +A + + + ITG+ GKT+ L + ++ + A IG+ Sbjct: 74 NLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSALIGT 133 Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--------------RPHIAV 188 N L + L + + + +A+ Sbjct: 134 LGNGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRVNGVHFDVAL 193 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 +T + HL ++ A+AK +F+ + D EL + A Y Sbjct: 194 LTNLTRDHLDFHGDMQSYAAAKKRLFDWASLKYAVLNLDDMFGAELAEQLQDASVEVIGY 253 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-----GIGYHMAQNMLMTLGIV 303 + + + N LG + Sbjct: 254 GLNDDSLKMAERLGIRMVYGSLTQMDAQGLTLQLHTSWGAAALCSRLIGSFNASNLLGAL 313 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++L A A ++ R + +G T++ + Y P ++ ++ + ++ Sbjct: 314 AVLLASEVRIDDAARELGLQKAVAGRMQTLGGKGLPTVVVD-YAHTPDALDKVLTTVREV 372 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSG----FHVLALKDAL 418 + G+ I V G G + ++ + S + + Sbjct: 373 TESAGGKVICVFG----CGGDRDRGKRPMMGTVASKLADVRIITSDNPRSEEAAEIVSEI 428 Query: 419 PRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 + Y E ++ D V++ K Sbjct: 429 AAGMQGEYQVIEDRAKAITLAIANARHIDTVLLAGKG 465 >gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] Length = 548 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 90/480 (18%), Positives = 150/480 (31%), Gaps = 53/480 (11%) Query: 7 FHDLLQAIQ-----GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +L + G + V G+++DSR + P + + A+ G + G F A Sbjct: 34 LSELRGVLGLPPGAGPADPSGADPAVRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQAR 93 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 GA + + + +P V D L LA + +TG+ GK Sbjct: 94 ASGAAAALSDRPLP------GLPTLVVPDPRAVLGPLAAHLHDHPSHHLEVYGVTGTNGK 147 Query: 120 TTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDVDFGIFELGM--- 169 T+T +L L S I ++ A + + E G Sbjct: 148 TSTTHLLDAGLRSAGHRTGMISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSA 207 Query: 170 ----SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 S G R AV T + HL E +AKA + + + Sbjct: 208 AVEVSSHGLALHRVDGTRFRAAVFTNLGRDHLDLHGDQESYFAAKASL-FAPHRCALAVV 266 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD+ L A+ T +S + AD++ + + ++++ + G V Sbjct: 267 NVDDAHGRRLAAQVRVP--VTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRL 324 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 H +G H N L + + +V+ ++ + GR +R + Sbjct: 325 HLLGTHQVDNALGAVAALHAGGLNVEDVLRGMEDLTAVSGRLQRIDEGQPFLALVDYAHN 384 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 A +L + GR + VLG GE L + V Sbjct: 385 VAA-------QRRLLPFLRTLTGGRLVVVLGA---TGERDPGKRGPLGRTAAQLG-DVVI 433 Query: 406 LSGF-----HVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 ++ AL++ S VH D S GDVVVV Sbjct: 434 VTDESPHDDDPAALREAVAGGARGAASAQVHVEADRDRAIRLAVSLADPGDVVVVSG-RG 492 >gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium saccharolyticum WM1] gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium saccharolyticum WM1] Length = 491 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 71/470 (15%), Positives = 143/470 (30%), Gaps = 44/470 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 F + L+ + + V + DSR F +KG D H+FI V G Sbjct: 1 MKFKEWLKDLTYEVLQGSLDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122 ++VV + V + AL L A K I +TG+ GKTTT Sbjct: 61 VQILVVERKTE---LPDGVTAILVHNAREALALLSAARFGYPAEKMVTIGVTGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L + K IG+ IG ++ + E Sbjct: 118 THMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHMAEAGCEYMVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S + + T I+P H+ +E A + ++ + Sbjct: 178 V--SSQAFKMHRVDGISFDYGLFTNISPDHIGP----DEHADFEEYLYYKSRIFSCCKVG 231 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + E + + K+ DF+ + ++ ++ ++ K + + Sbjct: 232 IMNGDDEHWAEVVKDATCRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDIKGISQLSV 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + N+ L VS+L+ G+ ++ ++D ++ Sbjct: 292 RVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNVNGRMEIVYSSETCTVIVDYAH 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA +LS + + R + V G G S+ I + + + Sbjct: 352 NAVSMES-----LLSTLRDYRPKRLVCVFG---CGGNRSKDRRITMGDSAGRLADFTIIT 403 Query: 407 SG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + ++ +L + + + GD++ Sbjct: 404 ADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMI 453 >gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-29] gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-3] gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-3] gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-29] Length = 491 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 82/477 (17%), Positives = 153/477 (32%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G ++D + S + + +S++V Sbjct: 234 KYAVLNSDDPVAEEYMRSTAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISH 403 Y P S++ + Q + G ++G G + A V Y Sbjct: 351 -YAHTPDSLENVLKTAKQFA---NGDVYCIVG----CGGDRDRTKRPVMASVAVEYATQA 402 Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ S +A+ D + + + E + S D++++ K Sbjct: 403 IYTSDNPRSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKG 459 >gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC 43243] gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC 43243] Length = 502 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 80/493 (16%), Positives = 155/493 (31%), Gaps = 58/493 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M ++++ I I V G++ DSR + AF I G +GH +I Sbjct: 1 MGEAMKISNIIEKINASVISGSCDADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYIQDV 60 Query: 61 VQKGAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA-- 112 + +GAGL+VV++ + ++ V DD A ++ A + Sbjct: 61 IGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLFTIG 120 Query: 113 ----------------ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156 + S G T + + A + ++ + Sbjct: 121 ITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFAKMV 180 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214 + + E+ S G + T ++ +I V T I P H+ S E+ S KA++F Sbjct: 181 EAGCEAVVMEV--SSQGLMLNRTAGIQFNIGVFTNIEPDHIGPNEHSSFEDYLSCKAKLF 238 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--- 271 + + + + A + +G S+ AD + + E Sbjct: 239 RQCD-------IGIVNADDEHVDRILANATCRVEKYGFSETADIRAADKELLYEHGKLGT 291 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS--VFHPKEGRGKR 329 ++++ G N L + + D KAL + Sbjct: 292 KYHVSGLVNLDIELCMPGNFSIYNSLCAIAVTRHFNVDEQRLKKALYDVRVRGRIDIVDL 351 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 ++ FT++ + + A S+L + + R + V G G + Sbjct: 352 AEVNASRRDFTIMVDYAHNA----MALESLLKTLKEYNPKRIVTVFG---CGGNRDRDRR 404 Query: 390 IDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSS 440 ++ EV + + S A+ + I + E + + Sbjct: 405 FEMGEVSGRLSDFTIITSDNPRNEEPEAIIADIVTGISRTSGRHVEIADRREAIKYAVDN 464 Query: 441 LVDGDVVVV--KS 451 GDV+VV K Sbjct: 465 AQPGDVIVVAGKG 477 >gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] Length = 537 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 76/495 (15%), Positives = 138/495 (27%), Gaps = 67/495 (13%) Query: 6 TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHA 60 T L G V G+ D R+ I + F A+ G G +F A Sbjct: 29 TVSALAALAGARVEAPTGTAEHVIVTGV--DLRAQGIVEGDLFAALPGARAHGAEFAADA 86 Query: 61 VQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 + +GA ++ + A + +L +PV DD G L +L+ R K +I ITG+ Sbjct: 87 LARGATAILTDEAGFALVSALGSDMPVLVHDDPRGVLGELSATIYGRPSEKMQVIGITGT 146 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI-G---------------VPLTLARMPVDV 160 GKTTT ++ AL++ +T +G+ + G L + + Sbjct: 147 SGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGRRVPSALTTPEAPQLHALFAVMLEQGI 206 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--------ASAKAE 212 D + E+ SH + + VR + T ++ HL E+ A+ + Sbjct: 207 DTVVMEV-SSHALSLGRV-DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAADSSV 264 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + + T S G A + Sbjct: 265 HAQHAVICIDDVWGQRMADVARGAHSIVTTVATTPDSEGAVWTAGPATVSPSGSQTFALT 324 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + +E+ G ++ + L A+ + G+ R Sbjct: 325 TAEGTTLDVELRLPGQYNVANASLAVALCAAL-----GVDPRDAVEGIAGVDVPGRVQRI 379 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 Q F ++D ++ A + L Sbjct: 380 DRGQDFLAVVDYAHKPAAVEAVIATLREQVRGRVAVVVGAG---------GDRDAGKRPL 430 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQ 438 + + ++ ++ A+ V Sbjct: 431 MGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVPESERGQVWEVADRAKAIADAV 490 Query: 439 SSLVDGDVVVV--KS 451 GDVV+V K Sbjct: 491 GWAQAGDVVLVAGKG 505 >gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD] Length = 741 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 144/384 (37%), Gaps = 19/384 (4%) Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 + + VDD + L KLA I ITGS GKT KE L LS + Sbjct: 2 DNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVK 61 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 S+N+ IG+PL+L + + GIFE+G+S E+ L + P I V+T I AH+S Sbjct: 62 SPKSFNSQIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHIS 121 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 NF + + K + + + +L + + N D Sbjct: 122 NFKSEKHLVDEKISL-------FKDSESIIFNGDNILVSNKINTLYSSKNLISYGFNKDN 174 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + ++ + + L I++++ + K + Sbjct: 175 NIHISSNWKDRQQPITV--QCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIE 232 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 + + R +I++S+N + S+K I + + ++ ++ D Sbjct: 233 KINNLKAVEMRLESVNGIKNNLIINDSFNLDLDSLKI---AFEFIKSYQKPKKSLIITDF 289 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LF 436 E + + + ++A +++ N + V+L G + + L + T + LF Sbjct: 290 TEK-SDADNLYQEVASLINEQNFNKVFLIGEEISQYQHLL--NTESFSFNTTNDLFSNQE 346 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRL 460 + + +++++K + ++ Sbjct: 347 FKDL--ENELILLKGARKFEIEQV 368 >gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] Length = 480 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 81/424 (19%), Positives = 143/424 (33%), Gaps = 30/424 (7%) Query: 5 WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L++ + G V+G +ID+R +AP F A +G +G DFI AVQ Sbjct: 1 MRLGSLIEGLDAKPDAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARVNGEDFIPAAVQA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA VV D+ +LA +A+TG+ GKT+T Sbjct: 61 GATAVVA----RPEARVEGAIHIASDNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTV 116 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFEL--GM 169 E+ + A IG+ V + GI Sbjct: 117 ELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEA 176 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G ++ T + A T ++ HL ++ AK +F+ + + + D Sbjct: 177 SSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWAD 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + + + S G A +L ++++++GK+ +V IG Sbjct: 237 DEWSDKVIQRATKRGLRVLSVGVQGQA-LRLANRTPTQLGQTLDIEVEGKNYKVNLPLIG 295 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 + A N L G+ D ++ L P GR G +D ++ + Sbjct: 296 AYQAANALTAAGLAIAGGEDAGKVLELLGRVQPVRGR-LERAVITKAGAPVYVDYAHTPD 354 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 + + + PH GR IA+ G G + ++ HV ++ Sbjct: 355 G-----LRAAIEALRPHTRGRLIALFGA----GGDRDAGKRPQMGKVAADLADHVIVTDD 405 Query: 410 HVLA 413 + + Sbjct: 406 NPRS 409 >gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum MolK2] gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum MolK2] Length = 514 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 143/481 (29%), Gaps = 55/481 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65 +L ++ H ++ D+R + + F A G DG I A++ GA Sbjct: 19 VLDWLRAHVPAGAD------LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGA 72 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122 V+ + + VD + LA +I +TG+ GKT+ Sbjct: 73 SAVLAEAHGYVVPADAPVRILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 + + ALS + A +G+ G TL I Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVA 190 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G + R IA+ T + HL + E AKA +F + Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 D + LL + G+ + + + +V Sbjct: 251 DDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRA 310 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G N L LG++ + AI L P GR +R+ Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD 370 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P +++ + L+ I+ G+ AV G G ++ Sbjct: 371 ----YAHTPDALEQTLRALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422 Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 HV L+ + + + D + E L DVVVV K Sbjct: 423 QHVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGK 482 Query: 451 S 451 Sbjct: 483 G 483 >gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 516 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 76/479 (15%), Positives = 136/479 (28%), Gaps = 43/479 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL QA+ G G V G ID+R++ E F A+ G H G F A +GAG Sbjct: 22 VTDLAQAVGGTVHGDGGS--VRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADAASRGAG 79 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +A + L IP V DV + A A R + + +TG+ GKTTT Sbjct: 80 AVLSDPEGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTY 139 Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFEL--GMS 170 +L L + + +G+ +G P A V + + +S Sbjct: 140 LLRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVS 199 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + T ++ HL +E+ KA +F + + Sbjct: 200 SHALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGV- 258 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + L + G + + K + E Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318 Query: 291 HMAQNMLMTLGI-----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + L I + + R L +I + Sbjct: 319 GTFNAINAALAIVMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD- 377 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + NP S K + + +GR + V+G + + ++ + Sbjct: 378 FAHNPDSTKVLLDT---MRISTKGRLLLVMGADGQ----RDPGKRPILGQIAAELADFTY 430 Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 ++ G + + D VV+ Sbjct: 431 VTDGDIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITG-RG 488 >gi|218659512|ref|ZP_03515442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli IE4771] Length = 156 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 70/139 (50%), Positives = 92/139 (66%) Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 Q IDESYNANPASM+AAI++L+ P G GRRIAVLGDM EMGE ++ H DL Sbjct: 8 WRRQRQLHAIDESYNANPASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDL 67 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 A L I HVWL+G + ALK++LP S+HV Y E L ++ +S+ GDV++VKSS Sbjct: 68 AGPLLAAGIEHVWLAGADMAALKESLPESVHVEYREKTSELTDYVLNSVAPGDVLMVKSS 127 Query: 453 NSCGFYRLINLLLEEFPAI 471 GF +++ LL++FP I Sbjct: 128 LGIGFGKIVAALLDKFPGI 146 >gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 491 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 148/475 (31%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H LL + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTPEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + + + E ++ D++++ K Sbjct: 405 TSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459 >gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter lovleyi SZ] gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ] Length = 506 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 73/490 (14%), Positives = 136/490 (27%), Gaps = 59/490 (12%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL + + V+ ++ DSR + FFA+ G DGH FI AV Sbjct: 3 LEQLLHEVPLQATHGNLDVTVSALTCDSREVTAGTLFFALHGSKVDGHRFISQAVT---A 59 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 AS +P V + A+ +A +I ITG+ GKTTT Sbjct: 60 GAAAVVLEDASYAPEQVPWLQVTNGRQAMALMAARFFGNPTRDLPLIGITGTNGKTTTSY 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELGMS 170 +L L++ A +G+ + G R D F + +S Sbjct: 120 LLEGILTAAGLPPAVLGTISYRFGTTCIEASHTTPESTELQGIFRQLADAGAQAFVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228 + I V T + HL ++ A + T + Sbjct: 180 SHSLEQRRVDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPLRHAV 239 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + + +G + ++ +R+ + + Sbjct: 240 INADDPAAEEFIRAAACPVIRYGLAPGSEVTVRETTSSVNGISAILVTPQGEQPFHSRLL 299 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N+L L + I+ + GR N+ T + + + Sbjct: 300 GGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGR---LERVENRAGVTCLVDYAHT 356 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A +VLS + R I V G G + + ++ ++ Sbjct: 357 GDA----LENVLSTLKDLAGARIITVFG----CGGDRDNGKRPIMGRIAAGYSDLAVVTS 408 Query: 409 FHV---------LALKDAL----------------PRSIHVHYSETMDGLFLFIQSSLVD 443 + ++ + P E Sbjct: 409 DNPRTEDPHEILRQIRAGILPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAVRLARP 468 Query: 444 GDVVVV--KS 451 GD++++ K Sbjct: 469 GDILLLAGKG 478 >gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CFBP2957] gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CFBP2957] Length = 514 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 143/481 (29%), Gaps = 55/481 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65 +L ++ H ++ D+R + + F A G DG I A++ GA Sbjct: 19 VLDWLRAHVPAGAD------LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGA 72 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122 V+ + V VD + LA +I +TG+ GKT+ Sbjct: 73 SAVLAEAHGYVVPADAPVRVLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 + + ALS + A +G+ G TL I Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDTLVATGFTTPDAIQLQRSLVDLHRAGARAVA 190 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G + R IA+ T + HL + E AKA +F + Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 D + LL + G+ + + + ++ Sbjct: 251 DDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRA 310 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G N L LG++ + AI L P GR +R+ Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVSWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD 370 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P +++ + L+ I+ G+ AV G G ++ Sbjct: 371 ----YAHTPDALEQTLCALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422 Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 HV L+ + + + D + E L DVVVV K Sbjct: 423 QHVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGK 482 Query: 451 S 451 Sbjct: 483 G 483 >gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] Length = 486 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 55/475 (11%), Positives = 116/475 (24%), Gaps = 46/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++L++ I + I+ DSR P F + G DGH F A +G Sbjct: 1 MKLNELVRHID---HTGASDAEITAITYDSRKAGPGALFVCLVGAWMDGHTFARSAYDQG 57 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-----------------K 107 +V + D AL + Sbjct: 58 CRAFLVEH---TLDLPADVAQIVTQDTRAALAVIGADFYGNPAEQLHIIGITGTKGKTTT 114 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 A + + + + + + ++ A + + + +M + L Sbjct: 115 ALLTSAILTEAGLSCAYIGSNGVNIAGTHEATANTTPESLELHRLFRKMLDANVHHVV-L 173 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + + T ++ H+ E + + Sbjct: 174 EVSSQALRHHRVDGIPFEVVAFTNLSEDHI---GPGEHPDFEDYKAAKRRLFAEYNARVM 230 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + + + A SFG +AD++ Q ++ + + + Sbjct: 231 VYNADDAVSDYMRAGFAGQQVSFGIGHDADYRAVDLAQYRSETALGIDFTCEHGGEATPV 290 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 L + R+ T I + + Sbjct: 291 RVMSPGAFSASDALCAIALCGAFGVTPDQAAKTLAHTPVEGRFEVVEGLPGRTFIVDYSH 350 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A S L + + R I V G +G +Q +LAE + + L+ Sbjct: 351 NGLA----LTSALKTLRAYQPRRLICVFGS---VGGRTQVRRRELAE-AASAWADYSILT 402 Query: 408 GFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + GD+V+ K Sbjct: 403 SDNPDFEDPMNILRDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKG 457 >gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] Length = 483 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 155/471 (32%), Gaps = 45/471 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 L Q ++ V + G+ DSR I P + F A G DG FI AV GA VV Sbjct: 3 LTQLLKSWLNQEVVDCTITGMQNDSRLIQPGDLFVAYPGSAADGRLFIAKAVSAGAVAVV 62 Query: 70 VNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM 125 G SIP V D+ L +A A + TI ITG+ GKTT Sbjct: 63 YEPANFPIDGVLPTSIPCIAVPDLATKLAYIAKAFYDDPENSLTITGITGTNGKTTIAYQ 122 Query: 126 LTIALSSIKKTYACIGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSH 171 L A + + A IG+ P +L + + + +S Sbjct: 123 LAQAHHLLGQGAAYIGTIGQGNVNELQPLDNTTPDSLRLQKLLHQYKEQGLKQVCMEVSS 182 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + + A+ T + HL +E A+AKA +F G I DD + Sbjct: 183 HALAQHRVDALTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSGESLQWAIINQ-DDEY 241 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 +++ A ++G ++ D + W+ + ++V + +G Sbjct: 242 QQVMAAAL--KPHVKKLTYGLREDCDVKAVNWRMDINGTEIDVHSPWGQHHLRIKALGAF 299 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N L + + + +S GR + + L+D ++ + Sbjct: 300 NIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRL----EIVASAPYVLVDYAHTPDAL 355 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 + L + +GR V G G + ++ N + ++ + Sbjct: 356 E-----NALVTLGQIKKGRLWVVFG----CGGDRDKSKRPMMGKIASLNADKIIITSDNP 406 Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + HV + + + D++++ K Sbjct: 407 RTEDPQTIIEEIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKG 457 >gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AYE] gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii AB0057] gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB056] gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB058] gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB059] gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AYE] gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii AB0057] Length = 499 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 81/465 (17%), Positives = 150/465 (32%), Gaps = 57/465 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 PQ +G S+DSR + + F A+ + F A+ GA V+ T++ + Sbjct: 18 PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134 + DV + ++ IIA+TG+ GKTT ++ L S + Sbjct: 76 E------WVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179 + + + +P D+ L S G + Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV + ++ HL +E A AKA +F+ + D ++K+ Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248 Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++ ++N D+ + + + Q S V +G+ +N++ Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++AL F PK + + + + A I Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 VL + H + AV G G L +L + V L+ + Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 417 IFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461 >gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 4222] gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 4222] Length = 482 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 48/459 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I DSR + F +KG D HDF A + + Sbjct: 10 ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ-----AAAQGAAAIVAERPIDVD 64 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V + +L LA + K +I ITG+ GKTTT ++ + + I Sbjct: 65 VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124 Query: 141 GSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N IG + + VD + E+ L R Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGCDYD- 183 Query: 185 HIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV T + HL +EE A G + + + + Sbjct: 184 -VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T+ ++G +D + S + + +S+ V IG N+L Sbjct: 243 TAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + T I + GR + +T+I + Y P S++ + Q Sbjct: 303 GLVSGVKLQTIIAVIKELAGVPGR---FEVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQ 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417 + +G ++G G + ++ +H + A+ D Sbjct: 359 FA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 411 Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + E +++ D++++ K Sbjct: 412 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450 >gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 482 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 48/459 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I DSR + F +KG D HDF A + + Sbjct: 10 ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ-----AAAQGAAAIVAERPIDVD 64 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V + +L LA + K +I ITG+ GKTTT ++ + + I Sbjct: 65 VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124 Query: 141 GSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N IG + + VD + E+ L R Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGCDYD- 183 Query: 185 HIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV T + HL +EE A G + + + + Sbjct: 184 -VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T+ ++G +D + S + + +S+ V IG N+L Sbjct: 243 TAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + T I + GR + +T+I + Y P S++ + Q Sbjct: 303 GLVSGVKLQTIIAVIKELAGVPGR---FEVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQ 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417 + +G ++G G + ++ +H + A+ D Sbjct: 359 FA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 411 Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + E +++ D++++ K Sbjct: 412 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450 >gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii AB900] Length = 499 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 79/465 (16%), Positives = 150/465 (32%), Gaps = 57/465 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 P+ +G S+DSR + + F A+ + F A+ GA V+ T++ + Sbjct: 18 PRQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134 + DV + + ++ IIA+TG+ GKTT ++ L S + Sbjct: 76 E------WVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179 + + + +P D+ L S G + Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV + ++ HL +E A AKA +F+ + D ++ + Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAQADLMINSAQ 248 Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++ ++N D+ + + + Q S V +G+ +N++ Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++AL F PK + + + + A I Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 VL + H + AV G G L +L + V L+ + Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461 >gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] Length = 458 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 151/448 (33%), Gaps = 54/448 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 DSR++ P + F AI DGHD+I A+ GA ++ GS + V+ Sbjct: 7 TDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEH------GSYKVETIIVEST 60 Query: 92 LGAL-NKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148 L L K +I +TG+ GKTTT M L +KK A +G+ + G Sbjct: 61 REYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFYYGD 120 Query: 149 ---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + L V++ + E+ SH + H + T + Sbjct: 121 VKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEV-SSHALDKDR-IHGLEFDEVAFTNLT 178 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E A+AK +F +N DD ++ + Sbjct: 179 QDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQHFVLE------SNNNIIIGQ 232 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 ++D ++ + + + + + + +G + N L+ L +V+ L ++ Sbjct: 233 HDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIEDI 292 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + GR + + N F Y P ++ + + GR I Sbjct: 293 LALNDKLKAPAGRMELLKYGTNSIFV-----DYAHTPDAVINVLKSAEEFK---NGRIIT 344 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSE 428 ++G G + + +L + +V + + + + D + + E Sbjct: 345 IIG----CGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFE 400 Query: 429 ---TMDGLFLFIQSSLVDGDVVVV--KS 451 + L D++++ K Sbjct: 401 IEVDRQKAIIKGMQQLKHNDILMILGKG 428 >gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] Length = 495 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 24/256 (9%) Query: 9 DLLQAIQGH----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ V Q + GIS S + F AI G DG +I +A+++G Sbjct: 7 ELLEQSGVTARNPLPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERG 66 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122 A L+V +D+ A ++P VD+ L+ L A +I ITG+ GKTTT Sbjct: 67 ASLIVTESDLTARE---NVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTT 123 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-------------PVDVDFGIFELGM 169 L L A G+ N I +++ + D + E Sbjct: 124 ALFLQHLLKKAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQASLAWSNDDVVVIE--T 181 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G ++ ++ A+ T + HL + +E AK +F ++ G +N Sbjct: 182 SSQGLHQYRMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLFSLMKADGKAVINSYT 241 Query: 230 SFFELLKAKSHALGIK 245 + L + A G + Sbjct: 242 MWGNRLAKELAANGKQ 257 >gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM 16841] gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM 16841] Length = 337 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 112/338 (33%), Gaps = 36/338 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + LL+ I S+ + I S + F I G +GH+++ AV+ Sbjct: 1 MQLLRSLLKQILYESVRGDDDRKITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQAVEH 60 Query: 64 GAGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104 GA ++VV+ ++ I +I V V D AL+ L+ A Sbjct: 61 GAAVLVVDDRYVIESRSGPVILTEHMKVNVYELIRDRNICVVAVRDTRKALSALSAAFFD 120 Query: 105 RS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PL 151 + +I ITG+ GKTTT + L IG+ ++ G Sbjct: 121 HPAERMKMIGITGTNGKTTTAFLTAGILQEAGYRVGMIGTIESYDGRRRETVKNTTPESC 180 Query: 152 TLARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + R+ V+ + + +S G T + I V I P H+ + Sbjct: 181 EIHRLLSRMVENECDCCVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIGK-GEHATFSE 239 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 + + G +N DD + + A A+ + + S Sbjct: 240 YLYCKSRLMRQCGIGIVNQDDPNVDKILAGHTCEVENFSIRHPSDVMAEDEWYGMESGSL 299 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 QS V+ + + ++V G N L + + Sbjct: 300 QSHFTVKREWRREDIVMQLPGQFNIYNALAAISVAGHF 337 >gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus pseudomycoides DSM 12442] gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock1-4] gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock1-4] gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus pseudomycoides DSM 12442] Length = 491 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 155/477 (32%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166 ++ + + IG+ N IG + T RM +V+ + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH + + +AV T + HL +EE A G Sbjct: 176 V-SSHALSLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G ++D + S + + +S+ + Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + + T I ++ GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGR---FEVVDGGQDYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ ++ Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLTTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAGVATEYATHA 402 Query: 405 WLS-----GFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ A+ D A + + S D++++ K Sbjct: 403 ILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKG 459 >gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] Length = 505 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 147/461 (31%), Gaps = 50/461 (10%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 FV I DSR P + F + G ++ A+QKGA ++ + Sbjct: 28 DCADVFVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTG---- 83 Query: 81 LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 L +P V DV L R +TG+ GKTT ++ + S + Sbjct: 84 LQVPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTG 143 Query: 139 CIGSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLV 182 G+ H + A + + E+ SH + L + Sbjct: 144 LSGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEV-SSHALDQNRLAGI- 201 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + VIT + H A+ KA + + ++ GT+ LN+DD A+ Sbjct: 202 DLSVGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNWDDPTCRSFAAEV--K 259 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +T+ ++ AD + ++ + + E+ G S+ V IG H N L Sbjct: 260 SSQTLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAA 319 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + + GR FT++ + + + A V+ Sbjct: 320 CLSLGVSLSEIALGIERLVTVPGR---MERVTCGQSFTVLIDYAHTDDA----LSHVIRS 372 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413 R V G G + L + + V ++ + + A Sbjct: 373 AKRLCSQRVFCVFGA----GGDRDTGKRSLLGMAA-SEADRVIITSDNPRSEDPAQIIRA 427 Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + + + S GD+V++ K Sbjct: 428 VAEGCLNKGVSPEQIIDRREAIHYALSEARRGDLVLIAGKG 468 >gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium gilvum PYR-GCK] gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. Spyr1] gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium gilvum PYR-GCK] gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. Spyr1] Length = 512 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 156/482 (32%), Gaps = 51/482 (10%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PL DL+ A + G VP V G+++ + + F A+ G G + AV+ Sbjct: 12 PLGALADLVCAEPADA-GPVPDLQVTGVTLRGQHAQAGDLFAALPGSKAHGARYAADAVE 70 Query: 63 KGAGLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 +GA V+ + D V A+ G ++P+ L ++A A R +I +TG+ Sbjct: 71 RGAVAVLTDADGVSEIAAHGGPAVPILVHPAPRSVLGEVAAAVFGRPSEHLRVIGVTGTS 130 Query: 118 GKTTTKEMLTIALSSIKK-------TYACIGSYNNHIGVPLTL---------ARMPVDVD 161 GKTTT ++ L S + I G+ A + VD Sbjct: 131 GKTTTTYLVEAGLRSAGRVAGLIGTVGVRIDGRAQPGGLTTPEAPDLQALLAAMLEQGVD 190 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEK 219 + E+ SH + + + + T ++ HL +++ A A+ Sbjct: 191 TVVMEV-SSHALTLGRVDGVS-FAVGGFTNLSRDHLDFHPTMQDYFEAKARLVDPTSPTH 248 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + DD + + A++ A + + +AD+ +++ + + + Sbjct: 249 AARSVICVDDEWGRAMAARADAP-----VTVSVTGDADWWVQEVRALDGGVQDFLAVDPA 303 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + L + + + +A G+ Q F Sbjct: 304 GVHHALEIGLPGGYNVANCLLAVALLDA-VDVSPEQAAPGLRDATVPGRLEAVDRGQPFL 362 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 L+D ++ + VL + GR V G G + ++ Sbjct: 363 ALVDYAHKPGALAA-----VLQTLREQCAGRLAVVFGA----GGDRDQGKREPMGRVAAE 413 Query: 400 NISHVWLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 V ++ G ++ A+ + +GD+V++ Sbjct: 414 LADLVVVTDDNPRGEDPAVIRAAILRGASGAQTVEIGDRRAAIVHAVQWAREGDIVLIAG 473 Query: 450 KS 451 K Sbjct: 474 KG 475 >gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 491 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 151/477 (31%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H LL + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLSGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + + + E ++ D++++ K Sbjct: 403 IYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459 >gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] Length = 501 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 82/464 (17%), Positives = 147/464 (31%), Gaps = 50/464 (10%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L + + ++ G + DSR +AP +AF A G DG + A+ Sbjct: 6 ALASVDAAVAWLRARVTGT--------LQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMA 57 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120 +GA +V + V G + + + A +A R + ++A+TG+ GKT Sbjct: 58 RGAVACLVEQEDVEPFGLAGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKT 117 Query: 121 TTKEMLTIALS-----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164 +T L AL+ + C IGVP L+ + + Sbjct: 118 STAWWLADALNGLSKKELPALAGCALVGTLGIGVPPGLSSTGMTTPDPVRLQRAFAQFAQ 177 Query: 165 -----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + S +G + +A+ T + HL S + AK +F+ Sbjct: 178 EGLGACAIEASSIGLAEQRLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFDWPGL 237 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D L G ++S A Q R V + Sbjct: 238 RAAVVNIDDAHGARLHAE--LQGGGLDLWSVSIQGPARLQARDIVHRGAGLAFTVAESAQ 295 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 ++ + IG + N+L + + L + A+ A + P GR ++ A Sbjct: 296 ALPLQTRLIGLYNVSNLLGVIAGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQPLVA 355 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 Y P ++ A++ L ++ GR V G G + L ++ Sbjct: 356 VD----YAHTPDALHQALAALRPMAAQRGGRLWCVFG----CGGNRDAGKRPLMGAVAQR 407 Query: 400 NISHVWLS-----GFHVLALKDAL----PRSIHVHYSETMDGLF 434 V ++ G A+ + V E Sbjct: 408 EADRVIVTSDNPRGEDPRAIIHQILLGTIAGTSVRAEEDRAAAI 451 >gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 200] gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 200] Length = 482 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 144/459 (31%), Gaps = 48/459 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I DSR + F +KG D HDF A + + Sbjct: 10 ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ-----AAAQGAAAIVAERPIDVD 64 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V + +L LA + K +I ITG+ GKTTT ++ + + I Sbjct: 65 VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124 Query: 141 GSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ N IG + + VD + E+ L R Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGCDYD- 183 Query: 185 HIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +AV T + HL +EE A G + + + + Sbjct: 184 -VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 T+ ++G +D + S + + +S+ V IG N+L Sbjct: 243 TAATVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + ++T I + GR + +T+I + Y P S++ + Q Sbjct: 303 GLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQ 358 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417 + +G ++G G + ++ +H + A+ D Sbjct: 359 FA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 411 Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + E +++ D++++ K Sbjct: 412 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450 >gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus weihenstephanensis KBAB4] gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus weihenstephanensis KBAB4] Length = 491 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 80/477 (16%), Positives = 152/477 (31%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D R S + + +++ V Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISH 403 Y P S++ + Q + +G ++G G + ++ Y Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATEYATHA 402 Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ S A+ D + ++ + E S + D++++ K Sbjct: 403 IYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459 >gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] Length = 530 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 53/459 (11%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR+I + F AI G DG +I A+++GA LVV + + G + D+ + Sbjct: 36 DSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHG--DVTFASSDNTV 93 Query: 93 GA---------LNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 L L + T++ ITG+ GKTTT ++L LS+ +KT A IG Sbjct: 94 AIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQMLSAYQKTCAVIG 153 Query: 142 SYN---------NHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + P L + D F + +S + IA Sbjct: 154 TNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQADLFDIA 213 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIK 245 + T ++ HL + +K +IF + D + L+ K L + Sbjct: 214 IFTNLSRDHLDYHGSMASYGESKKQIFSADSNQVAVVNFDDQQAKKWLENWPKQQTLWLY 273 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + + + + +++ +G N+L + ++ I Sbjct: 274 SRETDNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNLLAAISVLLI 333 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + R + T + + + A L Sbjct: 334 QGIPLSEIPH---LVTQVSAIAGRMEATSAKNLATAVVDYAHTPDA----LEKALQACRQ 386 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-- 418 H G V G G L + H+ ++ + + + Sbjct: 387 HCAGELYVVFG----CGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDIVA 442 Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 P + + + L + GD+V++ K Sbjct: 443 GFTCPDAEQISIILEREQAVLKTLNKAKPGDIVLLAGKG 481 >gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides DSM 2048] gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST196] gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH621] gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH621] gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST196] gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides DSM 2048] Length = 491 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 79/477 (16%), Positives = 151/477 (31%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D R S + + +++ V Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATEYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + ++ + E S + D++++ K Sbjct: 403 IYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459 >gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 515 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 78/490 (15%), Positives = 138/490 (28%), Gaps = 50/490 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L T + Q + V + +DSR +A AF A+KG DG DFI AV Sbjct: 7 IQLNTTQSI-QPLLAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAV 65 Query: 62 QKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAAR--LRSKATIIAITG 115 GA +++ D G S+ + D+ L+ LA S+ II +TG Sbjct: 66 SLGAKVIIAECDTQQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTG 125 Query: 116 SVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------ 165 + GKT+T ++ + + G + I Sbjct: 126 TNGKTSTVQLTSQLAALLNKRAASIGTLGSGVISCTGECASFGETINTTPDAITMHKLMA 185 Query: 166 ----------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 L +S ++ ++ +AV+T + HL ++ A AK EI Sbjct: 186 QFAQDNVKQVALEVSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQAKREILT 245 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWM 272 E + + + L + + +S NA + Sbjct: 246 QPELKFAVLNGNEIESKQWLAQLPNTVTPVVYGIDDESLLLGNAQKVCLAKEVEYSSQGC 305 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 L E I S L A G+ R Sbjct: 306 RFTLVSSWGECEIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRMERF 365 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + + ++D ++ + L + H EGR + G G L Sbjct: 366 SDEKSPTVVVDYAHTPDA-----LKQALLALRQHSEGRLFVIFG----CGGDRDKGKRSL 416 Query: 393 AEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + V ++ + + + + + Sbjct: 417 MGEAAETCADVVMITNDNSRSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATP 476 Query: 444 GDVVVV--KS 451 D+++V K Sbjct: 477 KDIILVAGKG 486 >gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] Length = 454 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 77/450 (17%), Positives = 156/450 (34%), Gaps = 61/450 (13%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 DSR + P + F AI DGHD+I A+ GA ++ G+ S+ V++ Sbjct: 7 TDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEH------GNYSVETVIVENT 60 Query: 92 LGALNK-LAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148 LN+ L K +I +TG+ GKTTT M+ LS +K+ A +G+ + G Sbjct: 61 RKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGFYYGN 120 Query: 149 ---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + L V++ + E+ S + + + T + Sbjct: 121 IKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEV--SSHALAKQRIYGLEFDEVAFTNLT 178 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E A+AK ++FE +N DD + + + Sbjct: 179 QDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDDIHHQHFMLEGNNN---------IV 229 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + D ++ + + + S V + +G + N L L +V+ L ++ Sbjct: 230 IDRDVKIENVDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTALLLVNKLGFKIEDI 289 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + GR + + N F Y P +++ + + +G+ I Sbjct: 290 LLLNEKLKAPAGRMELIKYNTNSIFV-----DYAHTPDAVENVLKSAQEFK---KGKIIT 341 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIH 423 ++G G + + +++ N +V + + + + + Sbjct: 342 IIG----CGGNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISDNFE 397 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + D++++ K Sbjct: 398 IIV--ERQDAIYKGVKMLDENDILMILGKG 425 >gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-15] gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1550] gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1550] gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-15] Length = 491 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALNLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + E + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459 >gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855] gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter ruber DSM 13855] Length = 543 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 16/351 (4%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163 RS +++ ITGS GKT+TK ++ L YA SYN +G+ L + + + Sbjct: 191 RSDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVL 250 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E G+ + G++ L + P +V+TTI AHL + IA+ K + E G Sbjct: 251 VLEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDRIAAEKGVLVERTAPDGPA 310 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSME 282 LN DD + + A G S +AD + + + + G ++ Sbjct: 311 VLNADDERVAAMAER--AAGPVWRISTEGHPDADITADDIRYDTGGTAFDVTDDTGTTVT 368 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 +G H N+L+ + + + + A+ P E R + ++G T+I Sbjct: 369 FETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQ----LRSRGDVTII 424 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+++N+NP + + +S G+R+ V M E+G+ + + D VL+ +++ Sbjct: 425 DDAFNSNPVGA---RNAVEILSEMDGGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLD 481 Query: 403 HVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V L G A L + + + +++ ++ L GDVV+ Sbjct: 482 LVVLVGEEQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532 >gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] Length = 452 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 76/215 (35%), Gaps = 17/215 (7%) Query: 11 LQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 L + G P+ V GI+ DSR++ P + + A+ G G DF+ A GA V Sbjct: 17 LAELSGQLGVAAPEQTAEVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAV 76 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126 + + + + +P VDD + +LA I ITG+ GKTTT ++ Sbjct: 77 LTDPAGAERVAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLV 136 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR-- 183 L ++ T + R + D M G + Sbjct: 137 EGGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSHA 196 Query: 184 ----------PHIAVITTIAPAHLSNFSGIEEIAS 208 I V T ++P H+ S +E+ Sbjct: 197 LVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFR 231 >gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium hathewayi DSM 13479] gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium hathewayi DSM 13479] Length = 493 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 142/472 (30%), Gaps = 41/472 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M F + L+ ++ I V + DSR F KG D H+FI Sbjct: 1 MEVFMKFREWLEELEYDVISGNLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDV 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVG 118 V+ G +VV + + V AL L A R + K I +TG+ G Sbjct: 61 VKAGVKALVVERQ---AEIPDGVTAIRVHSSREALALLSAARFGRPQEKMITIGVTGTKG 117 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE---- 166 KTTT M+ L S K IG+ IG ++ + + Sbjct: 118 KTTTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEY 177 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S +R + T I+P H+ + A + L + Sbjct: 178 MVMEVSSQAFKMHRVDGIRFDYGLFTNISPDHIGP-DEHADFAEYLYYKSQLLSRCRIGI 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 +N DD + + K A + + ++ Q+ + +E Sbjct: 237 VNRDDEHYREII-KDTACELASYSLEQEADFMAGQIHYVSEPEFVGLEFDVTGRYKLEAR 295 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + G N L + + S L + AL R + T+I + Sbjct: 296 VNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLS----VNGRMEIVYSSKKCTVIVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + + S+L + + R + V G G S+ + + + Sbjct: 352 YAHNAVS----MESLLKTLREYHPKRLVCVFG---CGGNRSKDRRYSMGDSAGRLADFTI 404 Query: 405 WL--------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 +G + ++ ++ + + GD++ Sbjct: 405 LTADNSRFEKTGDIIADIRSSIEKTGGEFIEIPDRREAIAYSMIHARPGDMI 456 >gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ATCC 19606] gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ATCC 19606] Length = 499 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 150/465 (32%), Gaps = 57/465 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 P+ G S+DSR + + F A+ + F A+ GA V+ T++ + Sbjct: 18 PRQPFYGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134 + DV + + ++ IIA+TG+ GKTT ++ L S + Sbjct: 76 E------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128 Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179 + + + +P D+ L S G + Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV + ++ HL +E A AKA +F+ + D ++K+ Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248 Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++ ++N D+ + + + Q S V +G+ +N++ Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLLGHFNVENLIA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++AL F PK + + + + A I Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 VL + H + AV G G L +L + V L+ + Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461 >gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 486 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 75/463 (16%), Positives = 143/463 (30%), Gaps = 41/463 (8%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A V G ++DSR + F A G +G DFI +K V Sbjct: 12 ASGYGLSPKEKDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 67 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + ++ A ++A + A+TG+ GKT+ E+ Sbjct: 68 VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMI 127 Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------------GMSHLGEIR 176 A IG+ + + + L S G + Sbjct: 128 AGHKAASIGTLGV--ITAENSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQ 185 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + + T+ + HL +E +AK +F+ + + D Sbjct: 186 YRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTV 245 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + G+ A +L + S+ + + +QG+S ++ IG + N Sbjct: 246 IAHVQKRGLKLIDIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNA 304 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L+ G+V D+ + AL++ P GR +R + N +D ++ + Sbjct: 305 LVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----L 358 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHV 411 + + + PH EGR V G G ++ HV ++ G Sbjct: 359 RAAIEALRPHTEGRLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414 Query: 412 LALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + GD+V++ K Sbjct: 415 ATIRKEILVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 457 >gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 491 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + D + + E + D++++ K Sbjct: 403 IYTSDNPRSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKG 459 >gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus maricopensis DSM 21211] gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus maricopensis DSM 21211] Length = 486 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 152/479 (31%), Gaps = 53/479 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 HDL + P V G++ + + P AF A++G DGH F+ A G Sbjct: 1 MKLHDLAAELNLTPPAENPD--VTGVTHHAGWVRPGFAFVAVRGARVDGHAFMAEAAANG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V + +P V AL A A ++ ITG+ GKTTT Sbjct: 59 AVCVFGE--GLPDGVPSPLPYVRVPGARAALADAAAALAGHPSRALRVVGITGTDGKTTT 116 Query: 123 KEMLTIALSSIK------------------KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + L + + + + V TL+ + + Sbjct: 117 SWITRHLLRAAGVRTGLLSTVGYELPDGALRHFPAHFTTPEAPEVQSTLSEIGASGGEAV 176 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 SH + + V +AV T + HL +E+ + KA + E+ Sbjct: 177 VLEASSHALALDRV-RAVDWDVAVWTHLTSEHLDFHGTVEQYFADKARLV---ERARFSV 232 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 LN DD + L+ ++ A ++G AD++ ++ S V + Sbjct: 233 LNADDPWTAQLRPRAAA-----YVTYGVEDVADWRAGDIEERSTGLHFHVLSPLGEFDAH 287 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N L + + L + VD + L+ F GR + Sbjct: 288 LPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRGVPGR---MELVPGGDAGVRVVV 344 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + P S++ A+ + GR I +LG G L EV + + + Sbjct: 345 DFAHTPPSLEKALEA---LRSTTRGRLIVLLGSAG--GPRDPGKRAPLGEVATRLADTAI 399 Query: 405 WL--------SGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++ + GD V++ K Sbjct: 400 FTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVALARPGDTVLLAGKG 458 >gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter baumannii AB307-0294] gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013150] gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013113] gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter baumannii AB307-0294] gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013150] gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013113] Length = 500 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 81/468 (17%), Positives = 152/468 (32%), Gaps = 62/468 (13%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI-------KGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 PQ +G S+DSR + + F A+ K + F A+ GA V+ T++ Sbjct: 18 PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTF----FAEAALANGALAVISETELG 73 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALS 131 + + DV + + ++ IIA+TG+ GKTT ++ L Sbjct: 74 VANE------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELI 126 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIR 176 S ++ + + +P D+ L S G + Sbjct: 127 SSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQ 186 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + IAV + ++ HL +E A AKA +F+ + D +++ Sbjct: 187 GRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIE 246 Query: 237 AKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + + I ++ ++N D+ + + + Q S V +G+ +N Sbjct: 247 SAQNNPAQPKILTYSLTQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPLLGHFNVEN 306 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ++ L ++AL F PK + + + + A Sbjct: 307 LIAALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA---- 358 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412 I VL + H + AV G G L +L + V L+ + Sbjct: 359 LIQVLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTED 414 Query: 413 ------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 415 PEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 462 >gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912] gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912] Length = 529 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 145/364 (39%), Gaps = 19/364 (5%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 A KLA R I+ ITGS GKT+TK +L L+ SYN +GV Sbjct: 169 RAAREKLA----QRPDLIIVGITGSYGKTSTKFILGTLLTQKFNVLVTPDSYNTPMGVCR 224 Query: 152 T-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 R+ + + + E+G G+IR L LV P I V+T + P HL F +E +A K Sbjct: 225 VVNERLKPEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAVGPVHLETFGSVEAVARTK 284 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E+ + L G +NYD+ + L ++ + ++ + Sbjct: 285 YELIKSLPPDGLAVMNYDNPYCRELAKETRHVQVEGYGLESPGARLVVSDVHVSEKGTTF 344 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 + + G+S +G H N+L + + L + + P R + Sbjct: 345 VLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLSLRQIAAGIGQLQPVPHRLQLI 404 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 R +ID+++N+NP + A+ VLS S GR++ V M E+G + ++ Sbjct: 405 RSGGVY----VIDDAFNSNPTGTEVALEVLSGFS----GRKVVVTPGMVELGGEEERYNR 456 Query: 391 DLAEVLSLYNISHVWLSGFH-VLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGD 445 + + ++ HV L G + L V +++ +Q L GD Sbjct: 457 EFGQRMAQV-CDHVILVGPERTKPIAAGLLDGGLPRDRVSVVTSLEEATAVLQQLLRPGD 515 Query: 446 VVVV 449 V+ Sbjct: 516 AVLF 519 >gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii ATCC 27126] Length = 521 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 82/494 (16%), Positives = 154/494 (31%), Gaps = 64/494 (12%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 ++A+ P + G+++DSR + + AF AIKG DG DFI A+ GA +++ Sbjct: 10 IKALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILA 69 Query: 71 NTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 T+ ++ G + + + + ++ L+ LA A K T +A+TG+ GKT+T + Sbjct: 70 QTEDSSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQ 129 Query: 125 MLTIALSSIKKT---------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-- 167 +LT ++ + P + + DF E+ Sbjct: 130 LLTQLKDALGTRSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRH 189 Query: 168 ---GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222 S ++ V+ IAV T + HL +EE A GL+ Sbjct: 190 TAFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQPGLKAVVL 249 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG--------------KSKNADFQLRKWKQCSE 268 + + ++ KS I G ++ + Sbjct: 250 NVNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLREHNNPQSRHCFATNASYHAG 309 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 E+ S + G N+L +G + D + A++ P GR + Sbjct: 310 GCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPGRME 369 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + + +A VL H G+ V G G Sbjct: 370 VFPVTGAANLVVDYAHTPDA-------LEKVLLSAKFHTTGKVWCVFG----CGGDRDKG 418 Query: 389 HIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQS 439 L + + ++ + + L + Sbjct: 419 KRPLMGQAAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLE 478 Query: 440 SLVDGDVVVV--KS 451 + D+++V K Sbjct: 479 HAHESDIIIVAGKG 492 >gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 491 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKG 459 >gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sodalis glossinidius str. 'morsitans'] gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sodalis glossinidius str. 'morsitans'] Length = 495 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 74/477 (15%), Positives = 152/477 (31%), Gaps = 45/477 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +LL + P + +++DSR+ A + F A+ G DG +I A+ +G Sbjct: 5 NLRELL----APWVPNAPGRVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 VV + A G + +PV + + L+ LA + + +TG+ GK Sbjct: 61 AAVVAQAEGEAEEGEIRELHGVPVIYLHRLQERLSALAGRFYQQPLHALRLTGVTGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY-----------ACIGSYNNHIGVPLTLARMPVDVDFG---IF 165 TTT +L + +T I +N G P+ + ++ + + Sbjct: 121 TTTTHLLAQWAQLLGETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQRQGATFA 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ AV T ++ HL + + +AK +F L+ I Sbjct: 181 AMEVSSHGLVQHRVSILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELDVGQRIIN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D + L+ A+ + + + D+ + + +VH Sbjct: 241 ADDATGRRWLQKLPQAIAVAVSGTLPPERQGDWLCAGEVRYHARGADIPFRSSWGEGIVH 300 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + L+ + A+ + + R + T++ + Sbjct: 301 CQLIGEFNVSNLLLALTTLLALGYPLPALLDSASR--LQSICGRMEVFHAEDRPTVLVDY 358 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + A L+ H G+ V G G L ++ V Sbjct: 359 AHTPDA----LEKALTAARLHCHGKLWCVFG----CGGDRDKGKRPLMGAIAEQYADRVI 410 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + +K L + D+V+V K Sbjct: 411 ITDDNPRGEAAQDIINDIKSGLLDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKG 467 >gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis C] gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase murF [Mycobacterium tuberculosis C] Length = 514 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 25/349 (7%) Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 GS+NN +G P T+ R D+ I E+ H G I L + P I V+ + AHL Sbjct: 163 PPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLG 222 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E IA KAE+ + + +G + LN DD + + A ++ S + + Sbjct: 223 EFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV--SRDNTGDVWA 280 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 ++ + + + S H N L + A V+ AL+ Sbjct: 281 GPVSLERIGQAALYAACPRCPSRGPDSGSAATHQVTNALCAAAVALECGASVEQVAAALT 340 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLG 376 P R + T+ID++YNANP SM+A + L+ I+ P R AVLG Sbjct: 341 AAPPV--SRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLG 398 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------------HVLALKDAL 418 +M E+GE + + H + + ++S + + G A D Sbjct: 399 EMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHG 458 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ D +++ L GDVV+VK+SN+ G + + L+ + Sbjct: 459 ADRTAVN-VADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 506 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVP----QGFVNG-ISIDSRSIAPQEAFFAIKG 48 M L T + + + G I P V G + DSR+I P F A+ G Sbjct: 1 MIEL-TVAQIAEIVGGAVADISPLDAAHRRVTGTVEFDSRAIGPGGLFLALPG 52 >gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH1134] gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus F65185] gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH1134] gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus F65185] gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 491 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] Length = 517 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 75/484 (15%), Positives = 139/484 (28%), Gaps = 42/484 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T L + G IG V+ ++S ++ P F A+ G G F Sbjct: 1 MTTSTTLKRLAEISGGTVIG-DASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADT 59 Query: 61 VQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 A ++ + + + P+ V+D+ L ++ K TI+ +TG+ Sbjct: 60 E---AAAILTDAEGKRILNDAGEKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGT 116 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------- 166 GKTTT +L L + IG+ I + + E Sbjct: 117 SGKTTTSYLLEAGLLHAGYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGV 176 Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S R + T ++ HL +E+ AKA +F+G + Sbjct: 177 THVVMEVSSHALSLGRVQGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADR 236 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + DD + + ++ A + + + + +AD R+ + Sbjct: 237 SVICVDDEWGRRMAQRAAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEH 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 M + I+ E R + Sbjct: 297 AGTFEFRLPMPGTFNIA-NAALATGMAASIGIEPQVFLEGVEKVAVPGRMERVDRGQDFV 355 Query: 343 DES-YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y PA++ A + L GR V+G G S L + Sbjct: 356 AVVDYAHKPAAIAAVLETLRTQLEGSAGRIGIVVGA----GGDRDSSKRPLMGAAAAKGA 411 Query: 402 SHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 V ++ + A + + + + + GD V+V Sbjct: 412 DLVVVTDDNPRTEDPASIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIV 471 Query: 450 --KS 451 K Sbjct: 472 VGKG 475 >gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC 35243] gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris 28-1] gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mobiluncus mulieris ATCC 35239] gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC 35243] gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris 28-1] gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mobiluncus mulieris ATCC 35239] Length = 516 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 79/475 (16%), Positives = 140/475 (29%), Gaps = 41/475 (8%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + A+ G G P G V G ID+R + E F A+ G H G F A+ +GA V+ Sbjct: 25 IADAVGGTRHG--PAGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVL 82 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 + + + + +PV V DV A + A A + +TG+ GKTTT +L Sbjct: 83 TDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTTTTYLLR 142 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSH 171 L + K A +G+ IG + + ++ + E+ Sbjct: 143 HLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHA 202 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 LG R +R +A + HL +E+ KA +F ++ + DD + Sbjct: 203 LGLGRVD--PLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFT-ERRSDRQVIIVDDDW 259 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L + +G + + + + Sbjct: 260 GRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPG 319 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + L IV ++T + R Sbjct: 320 RFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPRVIVDFA 379 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407 + A S+L + P GR V G + + ++ +L+ Sbjct: 380 HNPGALKSLLETLRPSTAGRLRLVFGGTGQ----RDLEKRPILGRIAGELADFTYLTDDD 435 Query: 408 ------GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 G ++ L +V + D VV+ Sbjct: 436 PHEEDPGKIRAEVRAGLEDFPGKYVEIAG-RSAAIKQAIQDAKPQDTVVIAG-RG 488 >gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus B4264] gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus B4264] Length = 491 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + E + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459 >gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 780 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%) Query: 5 WTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + +LL + S+ + + GI DSR + + F G DGH ++ A + Sbjct: 243 MSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADK 302 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 +GA VV + ++ + V+D L L+ A +I I+G+ GKT Sbjct: 303 RGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPALSAAFYKYPSKNMAVIGISGTNGKT 362 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGI 164 TT ++ ++ + ++ V +A+M + + Sbjct: 363 TTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAV 422 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 + S G V IAV T + HL +F G EE Sbjct: 423 V-MEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYR 465 >gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC 35316] gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cancerogenus ATCC 35316] Length = 471 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 61/451 (13%), Positives = 128/451 (28%), Gaps = 43/451 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88 DSR A + F A+ G DG +I A+ +G V+ A+ G + +PV + Sbjct: 4 DSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIYL 63 Query: 89 DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 + L+ LA + + + T +A + G Sbjct: 64 SQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGNG 123 Query: 149 VPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVITTI 192 + ++ + + +S G ++ ++ +V T + Sbjct: 124 LLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAASVFTNL 183 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 + HL +E +AK ++ I D+ L A+ + Sbjct: 184 SRDHLDYHGDMEHYEAAKWLLYSTHHHGEAIVNADDEVGRRWLAKLPDAVAVSMEDHINP 243 Query: 253 SKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + + + + K + + V E+ +G N+L+ L + L + Sbjct: 244 NCHGRWLKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALATLLALGYPMA 303 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 +K P GR + + + +A L H G+ Sbjct: 304 ELLKTAERLQPVCGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALEAARLHCAGKL 356 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI 422 V G G L ++ ++ + + + + Sbjct: 357 WCVFG----CGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDILAGMLDAG 412 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 E + DVV++ K Sbjct: 413 RARVVEGRAEAVTNAIMQAQENDVVLLAGKG 443 >gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 14579] gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH676] gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-Cer4] gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST24] gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis BMB171] gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 14579] gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST24] gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-Cer4] gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH676] gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis BMB171] Length = 491 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + E + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459 >gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 496 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 70/462 (15%), Positives = 157/462 (33%), Gaps = 41/462 (8%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79 + + +N I ++S+ I + F A+ G G +FI A++ G+ ++++ T + G Sbjct: 18 DISKIKLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILKHGI 77 Query: 80 ---SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL---- 130 +IP+ ++ +L++L+ L +I ITG+ GKTT + L Sbjct: 78 IYFIKNIPIIYFYNLNYSLSELSGKFYLHPSRYMNVIGITGTNGKTTISHFIAKWLFLLG 137 Query: 131 ----------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + N L + + + +S G + + Sbjct: 138 EKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQNRVN 197 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + A+ + ++ H+ + + +K ++F L I D +K + Sbjct: 198 NINFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKLNVYKYIINYDDVIGKNWIKKIPN 257 Query: 241 A-LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + S K KN ++ + + + S + G N+L++ Sbjct: 258 SIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNLLLS 317 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + L + + GR K + + +A V Sbjct: 318 FVALLTLGYNFKSLANVAENLTMPNGRMKIFYVKKIPRVIVDYAHTPDA-------LEKV 370 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHV 411 LS I H + ++ G G+ +S + ++ LY+I+ + + Sbjct: 371 LSAIKLHFKKNIWSIFG---CGGDRDKSKRRVMGKICDLYSINIILTNDNPRSESETKIF 427 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + V+ + + F + + D+V++ K Sbjct: 428 NDIKIGIKNLNKVNIIPSREHAIKFAIDNSNEKDIVLILGKG 469 >gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella ictaluri 93-146] gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella ictaluri 93-146] Length = 469 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 69/452 (15%), Positives = 135/452 (29%), Gaps = 45/452 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88 DSR A + F A+ G DG FI A+ +G V+ + A GS+ +PV + Sbjct: 2 DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61 Query: 89 DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS--------------- 131 + + L+ LA + ++ +TG+ GKTTT ++L Sbjct: 62 NRLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNG 121 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + Y + + + V L + D + + +S G ++ + + T Sbjct: 122 LLGHVYPSENTTGSAVDVQHMLRTLADDGATLVA-MEVSSHGLVQNRVLALPFAASAFTN 180 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 ++ HL +E A AK +F I D+ L A+ + Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIVNADDEMGLLWLDKLPDAVAVTVTGVLP 240 Query: 252 KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + + + + + +G N+L+ L + L + Sbjct: 241 EGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLLALGYPL 300 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A P GR + ++ + +A L H +G+ Sbjct: 301 AALCAASVQLQPVCGRMEVFQAPAKPTVVVDYAHTPDA-------LEKALLAARLHCQGQ 353 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421 + G G + L ++ V ++ + + + Sbjct: 354 LWCLFG----CGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDP 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 DV++V K Sbjct: 410 GLAMAIPGRAEAVTAAVMQAAPQDVILVAGKG 441 >gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1273] gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1272] gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1272] gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1273] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 83/477 (17%), Positives = 149/477 (31%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H LL + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D R S + + +++ V Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISH 403 Y P S++ + Q + +G ++G G + A V + Y Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMASVAAEYATHA 402 Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ S A+ D + + + E + D D++++ K Sbjct: 403 IYTSDNPRSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKG 459 >gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174] gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 51/478 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + V+ + DSR + F I+G DGH F+ ++KG Sbjct: 1 MKVSTLLEGLKYICCQGSTEQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFVPDVIRKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + V V D A+ ++ A K I ITG+ GKTTT Sbjct: 61 AK---TLVVEEEVEAPEDVTVIKVADTRYAMAFISAAYFGHPAEKLKTIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L + IG+ IG + R VD + Sbjct: 118 TYMVKSILENAGYKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKMVDAGCDCVVME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + T + T I P H+ + Sbjct: 178 VSSQGLMLHRTQGFVFDYGIFTNIEPDHIGP-----NEHKDFDDYLRCKSMLLQQCRVGI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVH 285 + + + + ++G S AD + + ++ + Q V Sbjct: 233 VNRDDEHFERIIEGHTCQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKGLMEFPVEI 292 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N L + I + IKAL R FTL+ + Sbjct: 293 DIPGKFSIYNSLTAIAICRHFNVSQENIIKALK----VARVKGRIEVIKVSDEFTLMID- 347 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y N ++++ ++ L + PH ++ G ++S ++ E +S Sbjct: 348 YAHNAMALESLLTTLREYHPHR------LVCLFGCGGNRAKSRRYEMGE-VSGRLADLTI 400 Query: 406 LSGFHVL--------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + Y E + GD++V+ K Sbjct: 401 ITSDNPRFEEPQDIIDDIKIGISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKG 458 >gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 172560W] gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10876] gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10876] gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 172560W] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] Length = 507 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 141/457 (30%), Gaps = 43/457 (9%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 +++ + S ++AP F + G DGH F A+ +GA + V + + + Sbjct: 25 DNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFAASALDRGAVALCVERALDLPVPQVV 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +P V + +LA + T + ITG+ GK+TT ML L S + Sbjct: 85 VPD-----VRRFMGRLAAVLYGEPAQRLTHVGITGTNGKSTTTYMLRSVLQSAGVKTGLL 139 Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 G+ H G + V G + S G + R Sbjct: 140 GTIVYHDGDKELEADRTTPENTDIQSFLARMVSNGCGACVMETSSHGLEQGRIEGCRFDR 199 Query: 187 AVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 T ++P HL E AK E ++ + N DD++ L + Sbjct: 200 GGFTNLSPEHLDYHGTEEAYFQAKKLLFEEYMKPSWKGASNRDDAYGRRLLEAYPENLVG 259 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + + L+ + + + EV IG + +N L + Sbjct: 260 YTREEPRPGDLGATLKSFDLTGMCLDLTLPDGRVLPEVHLPLIGTYNVENALACAALART 319 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 L D +T + L+ GR +RY + + VLS + Sbjct: 320 LDIDGETIRRGLASMPQVPGRLERYSLPGGVTCVIDYAHTPDG-------LEKVLSTLRH 372 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS 421 G+ +V G GE + S L E V A+ + + Sbjct: 373 VCRGQLWSVFGH---GGERTTSHRKALGEHAGRLADRVVVTMDNPRSEDPGAIAEQIVGG 429 Query: 422 IHVHYSE-------TMDGLFLFIQSSLVDGDVVVVKS 451 I + F GDVV+V Sbjct: 430 IQGSGAATPWEVRLDRGEAIRFALDGAQPGDVVLVSG 466 >gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BGSC 6E1] gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BGSC 6E1] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium intracellulare ATCC 13950] Length = 514 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 83/478 (17%), Positives = 155/478 (32%), Gaps = 51/478 (10%) Query: 10 LLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 L I G VP V G+++ ++ + P + F A+ G G + A+++GA Sbjct: 20 LAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERGAVA 79 Query: 68 VVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123 V+ + VA +G+L +PV D G L LA T++ +TG+ GKTTT Sbjct: 80 VLTDAGGVAEMGALGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSGKTTTT 139 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167 ++ AL + T IG+ I + A VD + E+ Sbjct: 140 YLIESALRAAGHTAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVDTVVMEV 199 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 SH + + R + T ++ HL + + AKA +F+ + Sbjct: 200 -SSHALTLGRV-DGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRARRVVV 257 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 + A T+ + G+ + + + G Sbjct: 258 CVDDDAGRAMAARAGDAITVSAEGRPAHW---RATDVAPMGAAGQRFTAIDPAGARHQLG 314 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + N+ L ++IL A + +A + G+ Q F L+D ++ Sbjct: 315 VRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQARVPGRMEEIDAGQDFLALVDYAHK 374 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A+ + + R V G GE + + V ++ Sbjct: 375 PG------ALRAVLTTLARPDRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLVVVT 424 Query: 408 -----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G +++ + + + + GDVV++ K Sbjct: 425 DDNPRGEDPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKG 482 >gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB108] gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB108] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPNESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + E + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459 >gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. TJI49] Length = 131 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + + + I G ++ +S DSR++ P + F A+KG +D HDF+ Sbjct: 1 MT-MLSLDQAARLIPGATVHGDAGVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + + L++P+ + AL LA R R ++A+TGS GKT Sbjct: 60 A----ARGAAAALVAHAPAGLAMPLIVGGETRAALGALAHGWRKRFALPLVAVTGSNGKT 115 Query: 121 TTKEMLTIALSSI 133 T KEM+ ++ Sbjct: 116 TVKEMIASIFAAA 128 >gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus R309803] gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus R309803] Length = 491 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404 Query: 407 SGFHVLA-----LKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + D + + + + E S+ D++++ K Sbjct: 405 TSDNPRSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKG 459 >gi|309806975|ref|ZP_07700957.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 03V1-b] gi|308166595|gb|EFO68792.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 03V1-b] Length = 270 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 10/238 (4%) Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 E L + +FG + + + + ++ IG H Sbjct: 38 EPLLQARAQTLNQLQATFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHN 95 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N L + + +AL+ F P R + + L + ++ + YN+NP + Sbjct: 96 VSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTA 152 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 KA ++ SQ+ GRRIAVLGDM E+G S H LAEVL+ I ++L G + Sbjct: 153 AKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMK 212 Query: 413 ALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 L +AL ++H + + MD + ++ + D+V++K S+ +++ LL Sbjct: 213 YLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 270 >gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-28] gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-28] Length = 491 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 152/479 (31%), Gaps = 52/479 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D H+F Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G ++D + S + + +S++V Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + G ++G G + +++ + Sbjct: 351 -YAHTPDSLENVLKTAKQFA---NGDVYCIVG----CGGDRDRTKRPVMASVAVEYATQA 402 Query: 405 WLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +KDA + V + S D++++ K Sbjct: 403 IYTSDNPRSEDPVAILDDMIKDAKGNNYEVIV--DRKEAIRYAISKAKAEDIIIIAGKG 459 >gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Bacillus cereus Q1] gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus Q1] gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 491 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 146/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATRYATHAIY 404 Query: 407 SGFHVL-----ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + ++ D++++ K Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459 >gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis Bt407] gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis Bt407] gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 491 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 79/477 (16%), Positives = 147/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H LL + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + E + + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKG 459 >gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 101 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 TF +L+ + + +G+S DSR I P + F A+ GP +DGH+++ KG Sbjct: 1 MTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 A +V ++ + S+P V D AL +L R Sbjct: 59 AVGALVEREVQGA----SLPQLVVIDTRKALAQLGAMNRNAF 96 >gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-2] gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-2] Length = 491 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 146/477 (30%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + L R +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D + S + + +S+ V+ Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVM 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + ++T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402 Query: 405 WLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + D++++ K Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-18] gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-18] Length = 491 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 152/479 (31%), Gaps = 52/479 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D H+F Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G ++D + S + + +S++V Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + G ++G G + +++ + Sbjct: 351 -YAHTPDSLENVLKTAKQFA---NGDVYCIVG----CGGDRDRTKRPVMASVAVEYATQA 402 Query: 405 WLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + +KDA + V + S D++++ K Sbjct: 403 IYTSDNPRSEDPVAILDDMIKDAKGNNYEVIV--DRKEAIRYAISKAKAEDIIIIAGKG 459 >gi|289758277|ref|ZP_06517655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis T85] gi|289713841|gb|EFD77853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis T85] Length = 364 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 139/349 (39%), Gaps = 26/349 (7%) Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 GS+NN +G P T+ R D+ I E+ H G I L + P I V+ + AHL Sbjct: 14 PPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLG 73 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 F E IA KAE+ + + +G + LN DD + + A ++ A Sbjct: 74 EFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGP 133 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + Q EV G H N L + A V+ AL+ Sbjct: 134 VSLDELARPRFTLHAHDAQA---EVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALT 190 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLG 376 P R + T+ID++YNANP SM+A + L+ I+ P R AVLG Sbjct: 191 AAPPV--SRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLG 248 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------------HVLALKDAL 418 +M E+GE + + H + + ++S + + G A D Sbjct: 249 EMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHG 308 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 V+ D +++ L GDVV+VK+SN+ G + + L+ + Sbjct: 309 ADRTAVN-VADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 356 >gi|164688449|ref|ZP_02212477.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM 16795] gi|164602862|gb|EDQ96327.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM 16795] Length = 248 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 13/236 (5%) Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 ++L + +FG K+ ++ + V + K + +G H Sbjct: 20 DMLATLKGKDLKYNLKTFGFEKDNTIYCVDFEMNDNDTIFNVMIDNKIEKFYIPTVGEHN 79 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N + + + L +D L + R + +T+ID YNA+ S Sbjct: 80 IYNAMAAILVGKTLNLTLDEIRNGLETLEITKSRMD----VIKNDNYTVIDSVYNASVDS 135 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 M+AA+ VL++ +A+LGD+ EMG ++ H + + S N + G Sbjct: 136 MRAALKVLNRYKTRR----VAILGDIFEMGSFAEEGHKQVGKDASE-NADVIIAIGKDAE 190 Query: 413 ALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + +VH+ T + ++ L GD ++VK+S ++ L Sbjct: 191 FISKEALENNMNKDNVHHFATKEEAMENFKNILQKGDTILVKASRGMHLEEVVEFL 246 >gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 491 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 148/475 (31%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATRYATHAIY 404 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + + E ++ D++++ K Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459 >gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] Length = 496 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 143/472 (30%), Gaps = 49/472 (10%) Query: 10 LLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L++ G I + + +++++ F IKG ++D HD I V+ GA Sbjct: 3 LIENTDGLDIDIISGKFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 VVV +I I V VD AL +L+ A K II ITG+ GKTT+ Sbjct: 63 AVVVER----NIKRDDICVIKVDSTRAALARLSAAYFGHPAKKMKIIGITGTKGKTTSSY 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR---------------MPVDVDFGIFELGM 169 ML L K + + + + ++ + E+ Sbjct: 119 MLKKLLEQNAKVGLIGTNGITVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEV-- 176 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + ++ +I + T I+P H+ ++ ++ +N DD Sbjct: 177 SSQAVMLKRIEGIKFYIGIFTNISPDHIGP-DEHKDFTEYLMYKSLFFKQCEKTVVNADD 235 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + +S + G + K S+ + + +G Sbjct: 236 EHSAYILEQSTSDEKYEFGKCGDFVINNINYISKKDFLGTSFCISCSKNVKDKYRVSEVG 295 Query: 290 Y-----HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N+ L +S + + G+ + +ID Sbjct: 296 DILVGIPGEFNVYNALSALSAAIICRVKPAVLQTALKDIKVNGRMEVAYSSHDIKIIIDY 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++NA ++ + + R + V G G S+ + E+ V Sbjct: 356 AHNAISTES-----LIKTLRRYEPKRLVVVFGS---GGNRSKDRRYSMGEICGKMADFSV 407 Query: 405 WLSG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + + L + + GD++ Sbjct: 408 VTADNSRYEKTEDIIADIVEKLSETGGKYITVPDRKEAIFYAMENSKPGDII 459 >gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 491 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + +++ A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + + E ++ D+V++ K Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKG 459 >gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis str. Al Hakam] gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis str. Al Hakam] Length = 491 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum UW551] gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum IPO1609] gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum UW551] gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum IPO1609] Length = 514 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 142/481 (29%), Gaps = 55/481 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65 +L ++ H ++ D+R + + F A G DG I A++ GA Sbjct: 19 VLDWLRAHVPAGAD------LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGA 72 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122 V+ + + VD + LA I +TG+ GKT+ Sbjct: 73 SAVLAEAHGYVVPADAPVRILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSC 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 + + ALS + A +G+ G TL I Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVA 190 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G + R IA+ T + HL + E AKA +F + Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 D + LL + G+ + + + +V Sbjct: 251 DDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRA 310 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G N L LG++ + AI L P GR +R+ Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD 370 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P +++ + L+ I+ G+ AV G G ++ Sbjct: 371 ----YAHTPDALEQTLRALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422 Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 HV L+ + + + D + E L DVVVV K Sbjct: 423 QHVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGK 482 Query: 451 S 451 Sbjct: 483 G 483 >gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena DSM 20109] gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena DSM 20109] Length = 520 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 85/482 (17%), Positives = 148/482 (30%), Gaps = 42/482 (8%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 P+ DL + ++G G+++ S + P + F A+ G G F AV Sbjct: 14 PVRRVEDLAADLDLVTVGAPAAGLTFTGVTMSSTDVEPGDLFVAVPGLKVHGARFAADAV 73 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGK 119 +GA V+ + D VA++ +PV D +A A + ++ + TG+ GK Sbjct: 74 ARGAVAVLTDDDGVAAVPP-DVPVLVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGK 132 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFEL 167 TTT + AL + A +G+ IG P+ A + V + G L Sbjct: 133 TTTTYFVDAALRAHHARTAVLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGAL 192 Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 S R + T + HL +E KA + E+ + Sbjct: 193 TTEVSSHALALGRVLGTRFDVVGFTNLQRDHLDFHGDMEGYFRDKARL-FAPEQARRGVV 251 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC---SEQSWMEVQLQGKSME 282 DD++ L ++ G + A + V Sbjct: 252 VVDDAWGRRLAEEAAIPVETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGAR 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V H + L IV A V A +V G+ R + L Sbjct: 312 HVAHSPLPGLVNVSNAALAIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLC 371 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 Y P ++ A+ + P GR + V G + ++ Sbjct: 372 LVDYAHTPDALVLALEA---VRPITPGRLVIVFGSDG----DRDRGKRPIMGEIAARLAD 424 Query: 403 HVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + ++ + + ++D P VH + + D V+V Sbjct: 425 VLVVTDENPRSEDPASVRAAILAGVRDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIV 484 Query: 450 KS 451 Sbjct: 485 TG 486 >gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202] gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202] gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda FL6-60] Length = 469 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 70/452 (15%), Positives = 136/452 (30%), Gaps = 45/452 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88 DSR A + F A+ G DG FI A+ +G V+ + A GS+ +PV + Sbjct: 2 DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61 Query: 89 DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS--------------- 131 + L+ LA + ++ +TG+ GKTTT ++L Sbjct: 62 SHLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNG 121 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + Y + + + V L + D + + +S G ++ + + T Sbjct: 122 LLGHVYPSENTTGSAVDVQHMLRTLADDGATLVA-MEVSSHGLVQNRVLALPFAASAFTN 180 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 ++ HL +E A AK +F I D++ L A+ + + Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIINADDETGRRWLDKLPDAVAVTVSGALP 240 Query: 252 KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + R + + + + +G N+L+ L + L + Sbjct: 241 AGWAGRWLAARSVAYHDGGATIAFDSCWGAGTLNSRLMGEFNVSNLLVALATLLALGYPL 300 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A P GR + ++ + +A L H +G Sbjct: 301 AALCAASGQLQPVCGRMEVFQAPGKPTVVVDYAHTPDA-------LEKALLAARLHCQGL 353 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421 + G G + L ++ V ++ + + + Sbjct: 354 LWCLFG----CGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDP 409 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 DV++V K Sbjct: 410 GLAMAIPGRAEAVTAAVMQAAPQDVILVAGKG 441 >gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] Length = 526 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 147/475 (30%), Gaps = 48/475 (10%) Query: 13 AIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 A G I + GI++ S F AI G G F A++ GA +V+ + Sbjct: 30 AADGQLAQIAESPLSLRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTD 89 Query: 72 TDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 D A L +PV V D + +L + T +A+TG+ GKTTT ++ Sbjct: 90 EDGRAQAFERGLGVPVIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMR 149 Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171 A++S + G+ H+G A + G+ EL Sbjct: 150 AAIASRFPNASLCGTVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHA 209 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 L R + +A T + HL + +E AKA +F E + + DD + Sbjct: 210 LSLHRVDGIV--FDVAAFTNLQHDHLDYYGDMENYFQAKALLFT-PEHSRHGVVCVDDEW 266 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGY 290 L ++ ++ + + Q ++ + V +G Sbjct: 267 GRRLAQQATVPVTTVSALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGE 326 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 QN + + L D+ I A+ GR ++ ++D ++ Sbjct: 327 VNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEA 386 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L GR + V G + + ++ +W++ + Sbjct: 387 LEW-----TLRSTRELTSGRVVIVFGTDG----DRDATKREHLAQIAAREADVLWVTDEN 437 Query: 411 VLA-------------LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKS 451 + P V T + GD V++ Sbjct: 438 PRTEVPQEIRNYLLRGIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITG 492 >gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus G9241] gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus G9241] Length = 491 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + +++ A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + + E ++ D+V++ K Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKG 459 >gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1] gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1] gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing bacterium SSC/2] gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 485 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 79/472 (16%), Positives = 151/472 (31%), Gaps = 43/472 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ + + ++ + DSR I F I G +DGH F+ A + GA Sbjct: 3 LKELLERSEYTLVQGSEDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAELGAA 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 VVV D+ ++ V D+ AL +++ A + T I ITG+ GKTTT Sbjct: 63 AVVVEKDVEV---PENLTVIKFDNTRLALAEMSAAYFGYPAEELTTIGITGTKGKTTTTY 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 M+ L + IG+ IG + + + E + +S Sbjct: 120 MIRAVLEHAGQKTGLIGTIETIIGDERIPSVNTTPESYIVQESFRKMADAGLKNVVMEVS 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + T + T +A H+ E + + Sbjct: 180 SQALMLHRTSGFEFDYGIFTNLAEDHIG-----ENEHKDMDDYIHCKSLLFKQCKQGIVN 234 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + I ++G D + E ++ V K + + + Sbjct: 235 GDDDYVERIIKDHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGKQEYNVHVDI 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + +L +S+ LS + + +G+ + +ID ++NA Sbjct: 295 PGDFTVYNSLAAISLCRHMGIVKEDVLSALNTIQVKGRLEIIKTPGDYTLMIDYAHNA-- 352 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 + S+L+ I + + + G G +++ ++ EV S V S Sbjct: 353 ---MSLESLLTTIRKYNPKKIYCLFG---CGGNRAKARRYEMGEVSSKLADLTVVTSDNP 406 Query: 409 ---FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + D L + GD+V++ K Sbjct: 407 RNEEPMDIINDILIGVHKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKG 458 >gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia pickettii 12J] gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J] Length = 514 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 83/461 (18%), Positives = 137/461 (29%), Gaps = 49/461 (10%) Query: 30 ISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ D+R + + F A G DG I A++ GA V+ A + + Sbjct: 33 LTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAEAHGYAMPADAPVRI 92 Query: 86 FGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VD + LA +I +TG+ GKT+ + + AL+ + A +G+ Sbjct: 93 LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152 Query: 143 YNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHI 186 G LA I + +S G + R I Sbjct: 153 LGT--GFVDALATTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTRFDI 210 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL + E AKA +F + D + LL+ + Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLFGWQGLRAAVINRDDAAGVRLLQNARADVETIE 270 Query: 247 IYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G + + + +V V +G N+L LG Sbjct: 271 YGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSNLLAVLG 330 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + AI L P GR +R+ Y P +++ + L+ Sbjct: 331 ALLAAGVSWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD----YAHTPDALEQTLRALA 386 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 I+ G+ AV G G ++ HV L+ + Sbjct: 387 PITEARGGKLWAVFG----CGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHILD 442 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + E L DV+VV K Sbjct: 443 EIADGMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483 >gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 458 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 77/448 (17%), Positives = 151/448 (33%), Gaps = 54/448 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 +SR++ P + F AI DGHD+I A+ GA ++ GS + V+ Sbjct: 7 TNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEH------GSYKVETIIVEST 60 Query: 92 LGAL-NKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148 L L K +I +TG+ GKTTT M L +KK A +G+ + G Sbjct: 61 REYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFYYGD 120 Query: 149 ---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + L V++ + E+ SH + H + T + Sbjct: 121 AKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEV-SSHALDKDR-IHGLEFDEVAFTNLT 178 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +E A+AK +F +N DD ++ + Sbjct: 179 QDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQHFVLE------SNNNIIIGQ 232 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 ++D ++ + + + + + + +G + N L+ L +V+ L ++ Sbjct: 233 HDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIEDI 292 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + GR + + N F Y P ++ + + GR I Sbjct: 293 LALNDKLKAPAGRMELLKYGTNSIFV-----DYAHTPDAVINVLKSAEEFK---NGRIIT 344 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSE 428 ++G G + + +L + +V + + + + D + + E Sbjct: 345 IIG----CGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFE 400 Query: 429 ---TMDGLFLFIQSSLVDGDVVVV--KS 451 + L D++++ K Sbjct: 401 IEVDRQKAIIKGMQQLKHNDILMILGKG 428 >gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinibacter ruber M8] gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinibacter ruber M8] Length = 543 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 16/350 (4%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164 S +++ ITGS GKT+TK ++ L YA SYN +G+ L + + + + Sbjct: 192 SDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVLV 251 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 E G+ + G++ L + P +V+TTI AHL + IA+ K + E G Sbjct: 252 LEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLVERTAPDGPAV 311 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEV 283 LN DD + + A G S +AD + + + + G ++ Sbjct: 312 LNVDDERVAAMAER--AAGPVWRISTEGHPDADITASDIRYDTGGTAFNVTDDTGTTVTF 369 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G H N+L+ + + + + A+ P E R + ++G T+ID Sbjct: 370 ETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQ----LRSRGDVTIID 425 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 +++N+NP + + +S G+R+ V M E+G+ + + D VL+ +++ Sbjct: 426 DAFNSNPVGA---RNAVEILSEMDGGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLDL 482 Query: 404 VWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V L G A L + + + +++ ++ L GDVV+ Sbjct: 483 VVLVGEEQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532 >gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] Length = 526 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 82/475 (17%), Positives = 151/475 (31%), Gaps = 48/475 (10%) Query: 13 AIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 A G I + GI++ S F AI G G F A++ GA +V+ + Sbjct: 30 AADGQLAQIAESPLSLRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTD 89 Query: 72 TDMVAS--IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT 127 D A L +PV V D + +L ++ T +A+TG+ GKTTT ++ Sbjct: 90 EDGRAQAFERGLGVPVIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMR 149 Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171 A++S + G+ H+G A + G+ EL Sbjct: 150 AAIASRFPNASLCGTVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHA 209 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 L R + +A T + HL + +E AKA +F E + + DD + Sbjct: 210 LSLHRVDGIV--FDVAAFTNLQHDHLDYYGDMENYFQAKALLFT-PEHSRHGVVCVDDEW 266 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGY 290 L ++ ++ + + Q ++ + V +G Sbjct: 267 GRRLAQQATVPVTTVSALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGE 326 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 QN + + L D+ I A+ GR ++ ++D ++ Sbjct: 327 VNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEA 386 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L GR + V G + + ++ +W++ + Sbjct: 387 LEW-----TLRSTRELTSGRVVVVFGTDG----DRDATKREHLAQIAAREADVLWVTDEN 437 Query: 411 VL-----ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++D L R I + + GD V++ Sbjct: 438 PRTEVPQEIRDYLLRGIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITG 492 >gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB102] gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB102] Length = 491 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIGTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] Length = 514 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 74/477 (15%), Positives = 161/477 (33%), Gaps = 49/477 (10%) Query: 7 FHDLLQAIQ---GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 +++L + + + + G++ DSR + + FFA+ G H+DG FI A+Q+ Sbjct: 14 LNNILSKLDKNMIKEVRGSCEVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQ 73 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 G+ ++V D+ + +++ ++ ++ + K II +TG+ GK++ Sbjct: 74 GSNVIVHTNDIDSYDPNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLKIIGVTGTDGKSS 133 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------------VDVDF 162 + L S+ I + G + +V++ Sbjct: 134 VCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEY 193 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I E L + +AV+T I+ HL ++ +AK +F + G Sbjct: 194 AIVESTSHGLDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANG- 252 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + + + ++KNADF + K + E + + Sbjct: 253 --GFGIVNMDDNNFSVFLNAINRVYTYSLENKNADFFVSKINEQMGFIEFEFYHKDVKYD 310 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + G +N++ L +VS + + + + EG R + F+LI Sbjct: 311 ARVNLTGSFNVENVMAALIVVSQVMNIHISEL--IEKLVNVEGLCGRMQGVDFGQDFSLI 368 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + A + + + R I+V G E +F L ++ Sbjct: 369 IDYAHTPGA----FLKIFPMFKRLAKNRLISVFGSAGE----RDTFKRKLQGEIADRYSD 420 Query: 403 HVWLSGFH---------VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + L + + + + + + + GD+V Sbjct: 421 IIILCDEDPRSEDSMQIIRDIAEGISGKTLNKDLFFIPDRRSAIEKAVDIAYAGDLV 477 >gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 491 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] Length = 497 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 75/456 (16%), Positives = 152/456 (33%), Gaps = 45/456 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + IS +S ++ F KG +D H +G + +V + + + + Sbjct: 25 DKDIEHISNNSNNLKENTLFICRKGSKFDSHTIAERLYNEGMVIALVTEEEI----NTKL 80 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACI 140 P V D A LA +TG+ GKTT + + Sbjct: 81 PHVQVYDSRLAEAYLAAEFYSHPYQHLITFGVTGTNGKTTCAHLFHHIMQQFGLNGSLSG 140 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-------------LVRPHIA 187 N+ +G + D + + +H + + +R IA Sbjct: 141 TVLNDILGDKFYVHNTTPDAITIMDNMSKTHKNGGSYYSMEVSSHSLDQGRVETIRFDIA 200 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 +T I HL E ++K +F+ L+K G +N E + + + Sbjct: 201 GLTNITRDHLDYHPTFEHYVNSKLHLFDLLKKDGIAVIN------EEYVQLLNGKKVPNL 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +FG ++NA +++ + ++ + +V IG + A N+ + L + + Sbjct: 255 VTFGVNENAQYKISDITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLAGLVEIG 314 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++D I +S F +GR + A G +ID +++ + V+S Sbjct: 315 YEIDEVISYISSFRGVDGRFEPIPEARRLGIEVVIDFAHSPDALE-----KVISSARKLA 369 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI 422 +GR I V G G + + + L+ G + + + + + + Sbjct: 370 KGRVIVVYGA----GGQADKGKRPMMAEVVTRLADIAILTTDDPRGENPEEIINEVEKGV 425 Query: 423 HVHYSE----TMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + GDVV++ Sbjct: 426 RPNSLSLTVLDRKEAIDTAITLANRGDVVLITG-RG 460 >gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter litoralis HTCC2594] gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis HTCC2594] Length = 495 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 147/470 (31%), Gaps = 38/470 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L +A G V+G +ID R +AP F A +G +G D+I AV Sbjct: 1 MKLARLAEAAGIAIEGG-EDIAVSGFAIDHRKVAPGTVFGAFQGSAVNGEDYISQAV--- 56 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V D A LA TI+A+TG+ GKT+T E Sbjct: 57 -AAGAVAVVAQPEATVEGAVHIAEDTPRRAFALLAAQYFTPVPKTIVAVTGTNGKTSTVE 115 Query: 125 MLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMS 170 M + + + L+ M G+ + S Sbjct: 116 MTRQLWRMAGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEAS 175 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ + A T + HL ++E AK +F+ + G + + + Sbjct: 176 SHGLSQYRNEGLPVAAAAFTNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVWTGN 235 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 +A A + + D +LR +E++ G++ ++ IG Sbjct: 236 SEWTAQAIERARQRELRLFTVGEQGEDIRLRARTPTQLGQELEIEHAGETRKLRLPLIGE 295 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + N L G+ D +S P GR G +D ++ + Sbjct: 296 YQVANALTAAGLAIATGTDPAAVWDGVSRLQPVRGR-LERAVITATGAPVYVDYAHTPDA 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407 + L+ + PH EGR + + G G + ++ V ++ Sbjct: 355 -----LEAALAALRPHVEGRLLCIFGA----GGDRDTGKRAPMGEVASRMADAVIVTDDN 405 Query: 408 --GFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G A++ + + + S D+V++ K Sbjct: 406 PRGEDPAAIRGQVLEGAGDNAREMADRREAIREVIESAAAKDIVLIAGKG 455 >gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] Length = 480 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 74/455 (16%), Positives = 150/455 (32%), Gaps = 53/455 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIP 84 V IS D+R I F A KG YD H+ I + ++V + P Sbjct: 23 EVADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLVTEKEF-------DFP 75 Query: 85 VFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V + AL+ ++ + I +TG+ GKTTT ++ + A G+ Sbjct: 76 TIVVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTARFGTI 135 Query: 144 NNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 N I L + + +F + E+ SH + + + + A Sbjct: 136 NYKIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEV-SSHALDQDRVYGIN-FNYA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T ++ HL +++ ++K+++F I D+ +LL + + Sbjct: 194 IYTNLSGDHLDYHKDLDDYFNSKSKLFTEYLNGCGIVNIDDEYGKKLL---YLIKDNEIL 250 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + A+ + + +++ + + L G+ + +G H N++ + L Sbjct: 251 TYSFNNNKANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAHHLG 310 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D D +A+ F GR + + ID ++ + +VLS + P Sbjct: 311 IDHDRITRAIKTFSNVPGR---LEKLIYNNIYIFIDYAHTDDALE-----NVLSSLRPFR 362 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418 + R I + G G ++ V ++ + + Sbjct: 363 KRRIITLFG----CGGDRDKSKRPRMAKVAEKYSDLVMVTSDNPRNEDPEKIIDGILKGF 418 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V D+V++ K Sbjct: 419 GDKSKVVVEPDRREAIKLALKEAEPEDIVLIAGKG 453 >gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 491 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 491 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERSIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + +++ A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + + E ++ D+V++ K Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKG 459 >gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster bacterium] Length = 495 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 159/482 (32%), Gaps = 65/482 (13%) Query: 2 NPLWTFH------DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 PL+T + ++ Q + +NG+ +++ + + F A++G G + Sbjct: 22 KPLFTINLYNERMNITQLL-ADITPTKIDLEINGLCLNTHNAQTGDLFIALQGETTHGIN 80 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAIT 114 I A++KG V+V++ + +IPV ++++ L LA A + +K +I +T Sbjct: 81 HIERAIEKGCVAVLVDSHDLE----CAIPVIRIENLKQYLPALASAYYSQATKVEVIGVT 136 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLT-------LARMPVDV 160 G+ GKT+ ++ LS + I + P ++ Sbjct: 137 GTNGKTSVGYFISQMLSELGIKNGFIGTLGISNSDVASANTTPDIFTLYKALHQYHLDNI 196 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + E+ S G + + A+ T + HL ++E K ++F Sbjct: 197 NTAVLEV--SSHGLDQNRVAGLNFKQAIFTNLTQDHLDYHQTLDEYRQVKLKLFSFDSIQ 254 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 I D + L A S GK + K + QL Sbjct: 255 SVIINQDDAYHQDFLDA-----------SKGKKQTTYSIKDFEKITINEQGFLCQLDNFV 303 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 E+ G N+L V L + I LS P GR ++ + AL + Sbjct: 304 FEIPLL--GKFNLSNVLAAFNSVEQLGFSREGIIPLLSRLFPPLGRMQKIKKALAWVDYA 361 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ++ ++K H E + V G G ++ Sbjct: 362 HTPDALANAITTLKE---------HHPEHKIRIVFG----CGGNRDKSKRAKMGKIASKL 408 Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 + L+ + + + S + + ++L +G+ +++ Sbjct: 409 ADTIVLTNDNPRKEDPQAIINDILSGIDDSFELDITLDRQLAIETAITTLNEGECLLIAG 468 Query: 450 KS 451 K Sbjct: 469 KG 470 >gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii SH145] gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii SH145] Length = 498 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 78/483 (16%), Positives = 159/483 (32%), Gaps = 65/483 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILH 59 L+T HD+ ++ G +DSR + P + F A+ + F Sbjct: 8 LYTPHDVADWMK---------QSFQGFELDSRKVKPGQIFIALTSLSQPEKT--VQFAQK 56 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITG 115 A+++GA V+ T+ S P V DV + + ++ I+A+TG Sbjct: 57 ALEQGALAVISETEPDVS------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTG 110 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFG 163 + GKTT ++ + ++ + + +P L Sbjct: 111 TNGKTTISRLVAEFIM-LQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQA 169 Query: 164 IFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 E + S G + + IA + ++ HL ++ A AK+ +F Sbjct: 170 GAEFASIEASSHGLEQGRLNGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFRFESLK 229 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + D+ +L A + I ++ ++ AD+Q++ + + +++ Sbjct: 230 VAVINIDDEHAQIMLDAAKNNPAQPKILTYSTTQKADYQVQDIQYSISGATFKLKTASAE 289 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V +G+ +N++ +L + ++++ I + GR L G Sbjct: 290 YIVNSPLLGHFNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRM----QVLRDGERL 345 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 + + + A VL + H AV G G L +L Sbjct: 346 FVVDYAHTPDA----LTQVLVTLKRHVSQNLWAVFG----CGGDRDRGKRPLMTQAALDG 397 Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV- 449 L+ + +K+ + S ++ F GD+VV+ Sbjct: 398 SDIAVLTSDNPRTEDPAQIFADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIA 457 Query: 450 -KS 451 K Sbjct: 458 GKG 460 >gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] Length = 480 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 81/469 (17%), Positives = 152/469 (32%), Gaps = 40/469 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DLL+ + + V G+++DSR++ P + FFA+ G DG FI Sbjct: 1 MKLRDLLRG-EAAIDPQAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFIEA----- 54 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + S+PV DD AL A R TI A+TG+ GKT+ Sbjct: 55 AVKAGAVAVVTGHPHTASVPVVVADDPRRALALAAAVVYPRQPRTIAAVTGTSGKTSVAA 114 Query: 125 MLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------LGMS 170 + + PV + I E L S Sbjct: 115 FTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAGDGVTHLALEAS 174 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G + VR T ++ H+ +E + K +F L G + D Sbjct: 175 SHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAPEGAPAVIAADH 234 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + G+ + +L + M V+ +G++ + +G Sbjct: 235 EHSATVIAAARTHKLNVMTVGR-QGEGIRLVEAAIDGFGQRMTVEHRGQNWRLRLPLVGE 293 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + L ++ + A +A + EG R ++ + + + Sbjct: 294 F---QIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVGDRFGAPVFVDYAHKPD 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 A + L + P+ +GR + V G G + L ++ + V ++ Sbjct: 351 A----LVKALEALRPYAKGRLVVVFGA----GGDRDAGKRPLMGEIAARHADTVIVTDDN 402 Query: 409 ---FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A++ A+ + ++L GDV+++ K Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKG 451 >gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus W] gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 95/8201] gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus W] gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 95/8201] gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 491 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Ames] gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Sterne] gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0488] gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0442] gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0193] gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0465] gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0389] gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0174] gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis Tsiankovskii-I] gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0248] gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Ames] gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Sterne] gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0488] gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0193] gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0442] gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0389] gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0465] gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0174] gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis Tsiankovskii-I] gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0248] Length = 491 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 491 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + + T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404 Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + E + D++++ K Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459 >gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus deserti VCD115] gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Deinococcus deserti VCD115] Length = 493 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 88/479 (18%), Positives = 152/479 (31%), Gaps = 51/479 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 HDL A+ +P V G++ ++ + P AF AI+G +DGH F+ + G Sbjct: 1 MRLHDLAAALN-VPTTSLPDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSFLQQVREAG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 A V+ + + +P V AL A A ++ +TG+ GKTTT Sbjct: 60 AVAVLGE--GMPDGMNSPLPYLTVPSARAALADAAAALAGHPSRALKVVGVTGTDGKTTT 117 Query: 123 KEMLTIALSSIK------------------KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + L + + + V TL M + Sbjct: 118 SWLTRHLLREAGLQTGLLSTVGFELPDGELRHFPAHFTTPEAPQVQQTLQDMVAAGASAV 177 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 SH + + V +AV T + HL +E + K + E+ Sbjct: 178 VLEASSHALALDRV-RGVDWDVAVWTHLTSEHLDFHGTVENYFADKRRLV---ERAPFAV 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 LN DD + L+ + A ++ G AD+Q ++ +V + + Sbjct: 234 LNADDPWTGQLRGVAPAETTYSLDGAG----ADWQATDIQERLTGLHFQVNSPLGAFDAA 289 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N L + + L AD L+ F GR G + Sbjct: 290 LPMIGRFNVANALAAMAAAAHLGADAAQLAAGLASFRGVPGR---MELVPAGGQEVRVIV 346 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + P S+ LS + GR ++G G L EV + V Sbjct: 347 DFAHTPPSL---EKALSTLRATTTGRLWVLIGSAG--GPRDPGKRAPLGEVATRLADHAV 401 Query: 405 WL--------SGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ + ++ + + GD V++ K Sbjct: 402 FTEEDSRDTPLEDILREMERGARQGGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKG 460 >gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1058 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 75/461 (16%), Positives = 146/461 (31%), Gaps = 37/461 (8%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A V G ++DSR + F A G +G DFI +K V Sbjct: 584 ASGYGLSPKEKDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 639 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + ++ A ++A + A+TG+ GKT+ E+ + Sbjct: 640 VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTI 699 Query: 133 IKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFL 178 SY+ + P + + D ++ S G ++ Sbjct: 700 AGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR 759 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + T+ + HL +E +AK +F+ + + D Sbjct: 760 SDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIA 819 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G+ A +L + S+ + + +QG+S ++ IG + N L+ Sbjct: 820 HVQKRGLKLIDIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALV 878 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D+ + AL++ P GR +R + N +D ++ + + Sbjct: 879 AAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----LRA 932 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413 + + PH EGR V G G ++ HV ++ G Sbjct: 933 AIEALRPHTEGRLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAAT 988 Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + GD+V++ K Sbjct: 989 IRKEILVGSPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 1029 >gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Eggerthella sp. HGA1] gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Eggerthella sp. HGA1] Length = 500 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 153/473 (32%), Gaps = 40/473 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L I +G VNGI+ S + P +AFF + G DGH F A+ +GA Sbjct: 4 TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 ++VV + + + + V D A+ A ++ ITG+ GKTTT Sbjct: 63 KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGKTTTT 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169 ++ K IG+ IG L D + + + Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEV 181 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S T + + + HL E AKA +F + D Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVICIDDK 241 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ELL + ++ ++ + G +A + + + + ++G + +G Sbjct: 242 WGKELL--RRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +N++ GI L +T ++AL GR +R G +D ++ + Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPD 359 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 L+ I GR + V G G + + +L V S Sbjct: 360 ALE-----KALASIMALTPGRTVCVFG----CGGDRDASKRPIMGKAALAADHAVVTSDN 410 Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + GD +++ K Sbjct: 411 PRTEDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKG 463 >gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] Length = 500 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 88/485 (18%), Positives = 151/485 (31%), Gaps = 53/485 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DL+ + ++ + GI+ DSR + P F AI+G YDGH FI AV + Sbjct: 1 MVNLQDLIAVLPDKTVTGPAGRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAVAR 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV------ 117 GA VV + +P V AL LA A A+++ + + Sbjct: 61 GAAAVVGERPLALE----GVPYVQVPSSRLALGLLASAFYGHPSASLVMVGVTGTNGKTT 116 Query: 118 -----------GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIF 165 G T + T+ ++ + + LA M + + Sbjct: 117 TTHLIRWVLEAGGHPTGLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMRDEGMTHAVM 176 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH ++ + + V T + HL + +E+ A+AKA +F L + Sbjct: 177 EV-SSHALALQRVAGCA-FDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGT 234 Query: 226 NYDDSFFELLKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 ++ A + ++G ++ AD R+ + + Sbjct: 235 TKPGPKAAVINADDPWGEFMAARSNAPVVTYGLNRPADITARQVEVEPGGIRFILVSPKG 294 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V G N L G L D T + L GR +R Sbjct: 295 EAPVRLRLTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERIDRGQPFAVI 354 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 Y P + + + +++ G+GR I V G G +S Sbjct: 355 VD----YAHTPDGLDNVLRSVRELA--GQGRVICVFG----CGGDRDRGKRPQMGAISAR 404 Query: 400 NISHVWLS-----GFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVV 448 + L+ A+ D + + GDVVV Sbjct: 405 LADYTVLTSDNPRSEDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVV 464 Query: 449 V--KS 451 + K Sbjct: 465 IAGKG 469 >gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp. 1_3_56FAA] gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp. 1_3_56FAA] Length = 500 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 153/473 (32%), Gaps = 40/473 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L I +G VNGI+ S + P +AFF + G DGH F A+ +GA Sbjct: 4 TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 ++VV + + + + V D A+ A ++ ITG+ GKTTT Sbjct: 63 KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGKTTTT 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFELGM 169 ++ K IG+ IG + D + + + Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVVAMEV 181 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S T + + + HL E AKA +F + D Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVICIDDK 241 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ELL + ++ ++ + G +A + + + + ++G + +G Sbjct: 242 WGKELL--RRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +N++ GI L +T ++AL GR +R G +D ++ + Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPD 359 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 L+ I GR + V G G + + +L V S Sbjct: 360 ALE-----KALASIMALTPGRTVCVFG----CGGDRDASKRPIMGKAALAADHAVVTSDN 410 Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + GD +++ K Sbjct: 411 PRTEDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKG 463 >gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH603] gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH603] Length = 491 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 149/477 (31%), Gaps = 48/477 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166 ++ + + IG+ N IG + + VD + E Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224 + SH ++ + +AV T + HL +EE A G Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + T+ ++G +D R S + + +++ V Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG N+L + + T I + GR + +T+I + Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P S++ + Q + +G ++G G + ++ +H Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATEYATHA 402 Query: 405 WLS-----GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A+ D + + + S + D++++ K Sbjct: 403 IYTSDNPRSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459 >gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus Ellin428] gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus Ellin428] Length = 1084 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 74/490 (15%), Positives = 142/490 (28%), Gaps = 73/490 (14%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 + L + +++ + + ++ DSR + P FFA+KG DG Sbjct: 597 DALLSHSAIVKVVG------PTDRDITHLTYDSRRVKPGTLFFALKGEKVDG-------- 642 Query: 62 QKGAGLVVVNTDMVASIGSLSIPV------------FGVDDVLGALNKLAVAARLRS--K 107 A V V + + A A Sbjct: 643 --------TAFIDAAIAAGAEAIVTENATFRTRATNIVVANARNTMADFAAAFYQNPARA 694 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 I +TG+ GKTTT ++ + + +G+ IG + A + E+ Sbjct: 695 LKIAGVTGTNGKTTTAFLIKHICEAAQLRCGLLGTVRYEIGDRVLPASRTTPESLDVHEM 754 Query: 168 --GMSHLGEIRFLT------------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 M G V A+ T + HL +E AKA + Sbjct: 755 LWQMRSAGCKACAMEVSSHALVQARVRDVEFDAAIFTNLTQDHLDYHKTMEAYFEAKARM 814 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 F L + + A+ + I ++G +ADF+ + + Sbjct: 815 FSELAAQKKKQGKAIINLDDRYGAQLVTRFGKAIPITTYGLGVHADFRASNVRIDFHGTS 874 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 ++ G+S V IG N L + + + +V + AL+ GR Sbjct: 875 YQLDAGGRSYLVRLPLIGQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPGR---LE 931 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 Q F + + + + A ++V+ R I V G G Sbjct: 932 AVPAQRQFRVFVDYAHTDDA----LLNVIKTCRELNPARLIVVFG----CGGNRDKTKRP 983 Query: 392 LAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIH---VHYSETMDGLFLFIQSSLVD 443 + + H ++ + A+ + + + + Sbjct: 984 RMGAVVDQHADHAIVTSDNPRKEEPLAIIEDIKPGMRRGNYEVIVDRREAIFKAVAMAQP 1043 Query: 444 GDVVVV--KS 451 D++++ K Sbjct: 1044 RDIILIAGKG 1053 >gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] Length = 486 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 70/456 (15%), Positives = 136/456 (29%), Gaps = 38/456 (8%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + + + GI+ DSR AP F A+ G DG ++ A + Sbjct: 18 LLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKD-----AVAKGAVAVVSGH 72 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-- 135 +PV V D L+ A + T++A+TG+ GKT+ + + Sbjct: 73 AVDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAVTGTAGKTSVASFVRQIWAFAGHAA 132 Query: 136 -------TYACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVR 183 A + P + + + + S G + V+ Sbjct: 133 AQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAAEGVTHAAMEASSHGLDQRRLDGVK 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A T + H+ IE+ +AK +F+ L + G + + D + ++ A Sbjct: 193 LAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIRAAADA 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G+ + R +Q + + L Sbjct: 253 GLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVIHEVDI----PLAGDFQVANALVAA 308 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + +A A+ G R L Y P ++ +VL+ + Sbjct: 309 GLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAYVDYAHKPDAL---ENVLTSV 365 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK-DA 417 P GR I V G G + ++ V ++ ++ + Sbjct: 366 RPFTSGRIITVFG----CGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEV 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + S L +GD ++V K Sbjct: 422 MAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKG 457 >gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1] gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1] Length = 488 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 76/471 (16%), Positives = 138/471 (29%), Gaps = 41/471 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T LL N + DSR + + FFA+ G +G D++ ++ G Sbjct: 5 THAQLLNLAGYSLEDSSHSALYNCLETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGC 64 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 + VV + I + V D + L A + + ++A+TG+ GK++ Sbjct: 65 KVAVV--PAELKLQRDDIELVSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFY 122 Query: 126 LTIALSSIKKTYACIGSY------------NNHIGVPLTLARMPVDVDFGIFEL--GMSH 171 + I + +G++ + + + G+ + S Sbjct: 123 IAQLAKYIGFSSGLVGTFGVGPLDRLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASS 182 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + V AV + ++ HL + A E DD + Sbjct: 183 HALDQGRIEGVPFQTAVFSNLSRDHLDYHGDMNSYA-LAKRRLFSFECVSHSIFCLDDGY 241 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + A Y + ADF +++ + G V +G Sbjct: 242 AGFMAE--GAARSSCHYYSEQDSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCF 299 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 QN L + D T I+ LS GR + + + +A Sbjct: 300 NVQNALAAFASLWYGVDDKATLIRGLSTLTGAPGRMDKVQLPNAPLVVVDFAHTADA--- 356 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 L + H GR I V G G L ++ N +VWL+ + Sbjct: 357 ----LEVALQAVKEHTNGRLICVFG----CGGDRDRGKRPLMMAAAMKNADYVWLTSDNP 408 Query: 412 L--ALKDALPR------SIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 +++ E S DV+++ K Sbjct: 409 RTESIEQIFSDVLAQTNKDAAFSFELDRRMAIHQAILSAGPEDVILIAGKG 459 >gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM 2243] gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM 2243] Length = 500 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 86/473 (18%), Positives = 153/473 (32%), Gaps = 40/473 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L I +G VNGI+ S + P +AFF + G DGH F A+ +GA Sbjct: 4 TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123 ++VV + + + + V D A+ A I + ITG+ GKTTT Sbjct: 63 KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDIALVGITGTNGKTTTT 121 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169 ++ K IG+ IG L D + + + Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEV 181 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S T + + + HL E AKA +F + D Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVICIDDK 241 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 ELL + ++ ++ + G +A + + + + ++G + +G Sbjct: 242 WGKELL--RRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +N++ GI L +T ++AL GR +R G +D ++ + Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPD 359 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 L+ I GR + V G G + + +L V S Sbjct: 360 ALE-----KALASIMALTPGRTVCVFG----CGGDRDASKRPIMGKAALAADHAVVTSDN 410 Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + + + + GD +++ K Sbjct: 411 PRTEDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKG 463 >gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus erythropolis SK121] gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus erythropolis SK121] Length = 544 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 142/477 (29%), Gaps = 60/477 (12%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---- 72 + GI D + F A+ G G F + A+ +GA ++ + Sbjct: 49 EVVVKGVDLRAQGIVTD-------DLFAALPGARTHGAQFAVDALGRGATAILTDEAGLE 101 Query: 73 --DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128 + S+PV + L +++ R K ++ ITG+ GKTTT +L Sbjct: 102 LIEAADKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEA 161 Query: 129 ALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSHL 172 A++ + +G+ I L +D + E+ SH Sbjct: 162 AIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEV-SSHA 220 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDS 230 + + + R I T ++ HL EE A A+ E + + DD Sbjct: 221 LALGRVDGI-RFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDV 279 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + + + S + +E +L G + + Sbjct: 280 WGRRMAELAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWPVSLRL 339 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+ +++ A A+ + G+ R Q F ++D ++ Sbjct: 340 PGRYNVANAALALTVSFAAGLDPDAAVRALGTVDVPGRVQRIDRGQSFLAVVDYAHKPAA 399 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 V++ + GR V+G G + L + ++ Sbjct: 400 LEA-----VIATLRNQVPGRVAVVVGA----GGDRDAGKRALMGEAGARGADLLIVTDDN 450 Query: 409 ---FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ ++ + V GDVV+V K Sbjct: 451 PRTEDPAKIRASVMQGAMDVPESERGEVREVGDRAAAIEQAVRWAQPGDVVLVAGKG 507 >gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citromicrobium bathyomarinum JL354] Length = 495 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 143/479 (29%), Gaps = 56/479 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK- 63 + LL+ G V G +ID R +AP F A G +G DFI AV Sbjct: 1 MKLNRLLEQ-AGREDRGAEDAIVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFIDAAVAAG 59 Query: 64 --------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 GA + + A ++A + TI+A+TG Sbjct: 60 AIAVVVRPGAKV-------------EGALQIADEAPRKAFAEIAAQYFTPAPDTIVAVTG 106 Query: 116 SVGKTTTKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 + GKT+T EM + + + + A + G Sbjct: 107 TNGKTSTVEMTRQLWRMLGERAASIGTLGVTTPDESVSTGLTTPDIVTFHANLSGLAREG 166 Query: 164 IFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + S G ++ + R T + HL ++ AK +F+ + G Sbjct: 167 VTHIAYEASSHGLDQYRNYGARVVAGAFTNFSRDHLDYHESMQAYFEAKMRLFDEVIADG 226 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + D KA++ A + D L + +E+ G Sbjct: 227 GTAVIWADGGEWADKARTRAEKRGLRIFTVGPQGDDICLIGQEPSQLGQSVEIARNGDRR 286 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + IG + A N L + AD A+ P GR G Sbjct: 287 TIRLPLIGQYQAANALTAAALALASGADEARLWDAVGRLQPVRGR-LERAVITQSGAPVY 345 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + ++ + PH GR I V G G + ++ Sbjct: 346 VDYAHTPDALEA-----AIAALRPHVNGRLIVVFGA----GGDRDTGKRGPMGEVASRLA 396 Query: 402 SHVWLS-----GFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ G ++ A+ + + D+V++ K Sbjct: 397 DVVIVTDDNPRGEDPADIRRAVMQGAGENTREVAGRREAIAQAIEIIGRDDIVLIAGKG 455 >gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] Length = 514 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 82/460 (17%), Positives = 137/460 (29%), Gaps = 47/460 (10%) Query: 30 ISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ D+R + + F A G H DG I A++ GA V+ + + Sbjct: 33 LTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRI 92 Query: 86 FGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VD + LA +I +TG+ GKT+ + + AL+ + A +G+ Sbjct: 93 LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152 Query: 143 YNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHI 186 G LA I + +S G + I Sbjct: 153 LGT--GFVDALAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTCFDI 210 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL + E AKA +F + D + LL+ + Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIETIE 270 Query: 247 IYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + + +V V +G N+L LG Sbjct: 271 YGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLG 330 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + AI L P GR +R+ Y P +++ + L+ Sbjct: 331 ALLTAGVPWPDAIAHLEKLQPVSGRMERFGGEDGPLVVVD----YAHTPDALEQTLRALA 386 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417 I+ G+ AV G G+ + + V S + D Sbjct: 387 PITEARGGKLWAVFG---CGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILDE 443 Query: 418 LPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + +H E L DV+VV K Sbjct: 444 IADGMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483 >gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] Length = 508 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 74/464 (15%), Positives = 151/464 (32%), Gaps = 50/464 (10%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I + + G++ DSR ++ FFA+ G +++G FI A+Q+G+ ++V D+ Sbjct: 23 IIGSCEVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDI--DF 80 Query: 79 GSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134 ++ VD ++ ++ A K II +TG+ GK++ + L S+ Sbjct: 81 YDSNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMG 140 Query: 135 KTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGIFELGMSHLGEI 175 I + G + +V++ I E L + Sbjct: 141 AKVGFISTVFLEDGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHGLDDR 200 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + +AV+T I+ HL ++ AK +F G + + Sbjct: 201 TSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHG---GFGIINMDDNH 257 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + +T K++ ADF + K + + E + G +N Sbjct: 258 FSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFEFYHNKTKYAARVNLTGSFNVEN 317 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 ++ L +VS + + + + E R + F+LI + + A Sbjct: 318 VMAALIVVSQIMNVDISKLICKLIN--IESLYGRMQDINFGQDFSLIVDYAHTPGA---- 371 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFH 410 + + + R I+V G E L ++ + L G Sbjct: 372 FLKMFPIFKRLAKKRLISVFGSAGE----RDILKRRLQGEIADEYSDVIILCDEDPRGED 427 Query: 411 VLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVV 447 + + + I + + + D+V Sbjct: 428 SMQIIRDIAEGIVTKTLNRDLFFIPDRKCAIEKAINIACSDDLV 471 >gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] Length = 506 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 71/462 (15%), Positives = 153/462 (33%), Gaps = 46/462 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 I + + G++ DSR + FFA+ G H+DG +FI A+++G+ ++V D+ Sbjct: 23 IKGSCEVEILGLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINFYD 82 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 +++ ++ ++ A II +TG+ GK++ + L S+ Sbjct: 83 PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNLKIIGVTGTDGKSSVCFYIYTLLKSMGVK 142 Query: 137 YACIGSYNNHIGVPLTLARMP-------------------VDVDFGIFELGMSHLGEIRF 177 I + G + +V++ I E L Sbjct: 143 VGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHGLDIRTS 202 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + +AV+T ++ HL ++ +AK +F + G + + + Sbjct: 203 RLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANG---GFGIINMDDKNFS 259 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + ++KNADF + K + + E + + + G +N++ Sbjct: 260 TFLNTINRAYTYSLENKNADFFVSKINEQMGFTEFEFYHKNVKYDARVNLTGSFNVENVM 319 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 L +VS + + + V EG R + F+LI + + A + Sbjct: 320 AALIVVSQVMNVDVSELIDKLVN--IEGLFGRMQGVDFGQDFSLIIDYAHTPGA----FL 373 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410 + + R I+V G E L ++ + L Sbjct: 374 KIFPIFKRLSKNRLISVFGSAGE----RDVLKRKLQGEIADRYSDIIILCDEDPRGEDSM 429 Query: 411 --VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + + + + + + D+V Sbjct: 430 QIIRDIAEGISGKTLNRDLFFIPDRKSAIEKAINIAHTDDLV 471 >gi|121535922|ref|ZP_01667718.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus carboxydivorans Nor1] gi|121305493|gb|EAX46439.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus carboxydivorans Nor1] Length = 183 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + + +T+I+++YNA+P SM++AI L++I+ GR+IAVLGDM E+G +++ Sbjct: 46 MRQHIEKKAGYTIINDAYNASPLSMQSAIETLAEIA---GGRKIAVLGDMLELGHVAKEA 102 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 H + + L+ + V G + +T + ++ + GD Sbjct: 103 HRRVGKQLAEIGVDTVITVGTLARDIAVTAKACGVACAIACDTHEEAKDVLRQVMQAGDT 162 Query: 447 VVVKSSNSCGFYRLIN 462 ++VK S ++++ Sbjct: 163 ILVKGSRGMKMEKVLD 178 >gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9211] gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9211] Length = 505 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 67/480 (13%), Positives = 136/480 (28%), Gaps = 39/480 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + H LL+AI + + IS DSR + + FF + G +G F A GA Sbjct: 4 SLHSLLKAIGLDVPIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGA 63 Query: 66 GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITG-------- 115 VV ++ V V D + + ++A + + I Sbjct: 64 VAAVVGDSARDCIPHDKKNLVVVVPDPVSQWMGEIASVFWGKPSLEMALIGVTGTNGKTT 123 Query: 116 --------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 S +L ++ K + V + + Sbjct: 124 TTHLIEHLSKSSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLCAM 183 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-- 225 +S + + A+ T + HL +E AKA +F+ Sbjct: 184 EVSSHALSQRRVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQARAV 243 Query: 226 -NYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 N DD + L + + +S + + K + + + Sbjct: 244 VNIDDQWGFRLAKRLGRNCWKSSLDLKNIQSVRPELFITGIKMTAAGAEGFIHTPFGEGP 303 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + IG N+L ++G++ +DT + A + F GR ++ + + + Sbjct: 304 FMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVKSDSLPMP 363 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + L + P G+ I V G G ++ Sbjct: 364 IVLVDYAHTP-DGLKNALKAVRPFVSGKLICVFG----CGGDRDKSKRSYMGEIAAEISD 418 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + +P + D++++ K Sbjct: 419 IVIVTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAGKG 478 >gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus H3081.97] gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus H3081.97] gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 491 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 147/475 (30%), Gaps = 44/475 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 H L+ + + + I DSR + F +KG D HDF Sbjct: 1 MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A + + +PV V + +L LA + K +I ITG+ GKTTT Sbjct: 56 AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168 ++ + + IG+ N IG + + + + Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226 +S H +AV T + HL +EE A G Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + A+ T+ ++G +D + S + + +S+ V Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG N+L + ++T I + GR + +T+I + Y Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P S++ + Q + +G ++G G + ++ +H Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATRYATHAIY 404 Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + + A+ D + + E ++ D++++ K Sbjct: 405 TSDNPRSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459 >gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Weiss] gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum MopnTet14] gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 483 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 153/470 (32%), Gaps = 42/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ I G V V ++ DSR + F A +G +G+D+ AV+ GA Sbjct: 3 LDQLLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAI 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++ + LS+ +D+ LA +I +TG+ GKTT Sbjct: 63 AILSS----LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSA 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + + + +G+ + +G + + + + +S Sbjct: 119 LARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +G V+T ++ HL EE AK ++F L + G +N D Sbjct: 179 SIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVAVVNSDCE 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + S A G+ S+ + AD++ K S S ++ QG +G Sbjct: 239 YAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGE 294 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N+L L +V + + + + + Y P Sbjct: 295 HNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCPIYID----YAHTP 350 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++ +LSQ+ P +GR I V G G + ++ V S Sbjct: 351 DALDNVCKILSQLLP-ADGRLIIVFG----CGGDRDHSKRPIMAKVAETYGFSVVTSDNP 405 Query: 409 --FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S +D D+V+V K Sbjct: 406 RTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKG 455 >gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] Length = 486 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 153/470 (32%), Gaps = 42/470 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ I G V V ++ DSR + F A +G +G+D+ AV+ GA Sbjct: 6 LDQLLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAI 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++ + LS+ +D+ LA +I +TG+ GKTT Sbjct: 66 AILSS----LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSA 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + + + +G+ + +G + + + + +S Sbjct: 122 LARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVS 181 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +G V+T ++ HL EE AK ++F L + G +N D Sbjct: 182 SIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVAVVNSDCE 241 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + S A G+ S+ + AD++ K S S ++ QG +G Sbjct: 242 YAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGE 297 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N+L L +V + + + + + Y P Sbjct: 298 HNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCPIYID----YAHTP 353 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++ +LSQ+ P +GR I V G G + ++ V S Sbjct: 354 DALDNVCKILSQLLP-ADGRLIIVFG----CGGDRDHSKRPIMAKVAETYGFSVVTSDNP 408 Query: 409 --FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S +D D+V+V K Sbjct: 409 RTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKG 458 >gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 90 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T + + G ++ + D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98 GAG ++V+ + + +P V D A +L Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQL 90 >gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces viscosus C505] gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces viscosus C505] Length = 528 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 76/461 (16%), Positives = 142/461 (30%), Gaps = 40/461 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81 + G+S+DS P E F + G G F AV GA V+ + D + Sbjct: 43 NDLSILGVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLTDADGAQIVHQTA 102 Query: 82 -SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 PV D + L+ A+TG+ GKTTT L LS+ Sbjct: 103 PGTPVLVHSDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCM 162 Query: 139 CIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ +G V + + V+ G L S + + Sbjct: 163 VAGTVELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGIVV 222 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A T + HL +E AKA++F E + DD + L A++ Sbjct: 223 DVAGFTNLQRDHLDFHKTMEGYLEAKAQLFT-PEHARRGVVCVDDQWGAALAAEAPIEID 281 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G++ + ++ + ++ + L +V Sbjct: 282 RVRAYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQNAALALVM 341 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A V A A+++ G+ R + G L + P +M+ A+ + Sbjct: 342 AIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPDAMELALKA---VR 398 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALP 419 P GR I V G + + + ++ + + +++A+ Sbjct: 399 PITPGRLIVVFGSDG----DRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAIL 454 Query: 420 RSIHVHYSE--TMDG-------LFLFIQSSLVDGDVVVVKS 451 + + ++ D V+V Sbjct: 455 EGVRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTG 495 >gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 511 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 83/502 (16%), Positives = 154/502 (30%), Gaps = 66/502 (13%) Query: 1 MNPLWTFHDLLQ-----------AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFA 45 M T +++ + G P+ N +S DSR++ FF Sbjct: 1 MT--MTLSEIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC 58 Query: 46 IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAA 102 KG +D ++ A +GA + + D A + +P V D+ A+ ++ A Sbjct: 59 -KGLKFDP-KYLTMAANQGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAF 116 Query: 103 RLRS--KATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYACIGSYNNHIGV 149 T+I TG+ GKTT+ ++ + H+ Sbjct: 117 FGFPDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTT 176 Query: 150 P-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSG 202 P + + VD + +S + + I V I+P H+S Sbjct: 177 PESLDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPS 236 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261 E+ + K+EI + + L K+H LG + I AD+Q R Sbjct: 237 FEDYLACKSEIIDNCRILVVNRECSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRL 293 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + L + G N L L + + + + L+ Sbjct: 294 GEHGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETT 353 Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381 ++ + Y N S+ A+ + + +GR I V+G Sbjct: 354 VPGR----MEFIKDKQGVVACVD-YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA--- 403 Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDG 432 G ++S D+ LS Y + S + + +I V + Sbjct: 404 GGKAESRRKDIGRALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKA 463 Query: 433 LFLFIQSSLVDGDVVVVKSSNS 454 + GD + ++ Sbjct: 464 AIEQAYAMAKPGDA-LFMAAKG 484 >gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 463 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 97/402 (24%), Positives = 152/402 (37%), Gaps = 53/402 (13%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 ++A+TGS GKT+ K +L L YA G+ NN IG+PL + P D D Sbjct: 62 RVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVA 121 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 I+E+G G+I +LT + +PH+A++ IAPAHL + +A K I+ L G Sbjct: 122 IYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVA 181 Query: 224 FLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD+F + + + ++ + +G +A+ R+ + + + Sbjct: 182 VINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEA 241 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 ++ G H N L G+ + L+ P GR L Sbjct: 242 QIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAGRQIAQTLPNGA---VL 298 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ID+SYNANP S+ AAI L+ G VLGDM E+G + H + Sbjct: 299 IDDSYNANPGSLDAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKL 354 Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL------------------VD 443 ++ G A A V T L +Q+ L + Sbjct: 355 QRLYALGELSAAAAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQE 412 Query: 444 GDV-------------------VVVKSSNSCGFYRLINLLLE 466 V ++VK S R++ LL Sbjct: 413 HAVNQEQQSPSVAALSGAAPITILVKGSRGSAMDRVVTALLA 454 >gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 541 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 85/511 (16%), Positives = 150/511 (29%), Gaps = 81/511 (15%) Query: 11 LQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 A+ + G + V ++ DSR P F A+ G DGHDF+ AV++G +V Sbjct: 9 AAAVDYTVLAEGASAELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVV 68 Query: 69 VVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125 + + + + + D A +L A R + +I ITG+ GKTT + Sbjct: 69 LCQPGCRLPTEKAPEVLHLATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYL 128 Query: 126 LTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFL 178 L + + + +P T + + E G+SH+ Sbjct: 129 LEDLIRRAGGEPGVIGTVNYRYRNRVLPATHTTPDPESLQPLLREMAEAGVSHVIMEVSS 188 Query: 179 THLVR-------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------------- 217 L + A+ T ++ HL +E + K +F Sbjct: 189 HALEQQRVAGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRYLKPGAAAVVLSGRA 248 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-------QS 270 E+ ++ + L + G + G+ + + Sbjct: 249 EQDDASLDCWNQRLIDELSPRVLPPGCRRRPKAGEVRLWRCGAAGNELRLLRRRLSLAGI 308 Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330 E+Q + + +G N+L G+ L T AL+ P GR +R+ Sbjct: 309 EAELQSSEGAWRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAALADAAPPPGRLERF 368 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390 R + +A VL + GR + V G G Sbjct: 369 RSRRGVEVLVDYAHTPDA-------LGHVLKALRRLATGRLVVVFG----CGGDRDRAKR 417 Query: 391 DLAEVLSLYNISHVWLSGFH------VLALKD-------------------ALPRSIHVH 425 L ++ V L+ + + D A P + Sbjct: 418 PLMGEVAAALADIVVLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLNRRTT 477 Query: 426 Y-----SETMDGLFLFIQSSLVDGDVVVVKS 451 + GDVV+V Sbjct: 478 CQGYDLVVSRRQAIRDTIYHARSGDVVLVCG 508 >gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral taxon 171 str. F0337] Length = 528 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 80/461 (17%), Positives = 142/461 (30%), Gaps = 40/461 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-- 80 + G+S+DS AP E F + G G F AV GA V+ ++D + Sbjct: 43 NDLSILGVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDSDGAQIVHESA 102 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYA 138 PV D + L+ A +I A+TG+ GKTTT L LS+ Sbjct: 103 PGTPVLVHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGGCM 162 Query: 139 CIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G+ +G V + + V+ G L S + + Sbjct: 163 VAGTVELRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGIVV 222 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 +A T + HL +E AKA +F E + DD + L A + Sbjct: 223 DVAGFTNLQRDHLDFHKTMEGYLEAKARLFT-PEHARRGVVCVDDQWGAALAADAPIEID 281 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + G + + ++ + ++ + L +V Sbjct: 282 RVRAYPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVM 341 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A V A A ++ G+ R + G L + P +M+ L + Sbjct: 342 AIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMEL---ALKAVR 398 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALP 419 P GR I V G + + + ++ + + ++DA+ Sbjct: 399 PITPGRLIVVFGSDG----DRDQGKRPMLGQVCARLADVLVITDENPRSEDPQLIRDAIL 454 Query: 420 RSIHVHY--SETMDG-------LFLFIQSSLVDGDVVVVKS 451 + + ++ D V+V Sbjct: 455 DGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTG 495 >gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 7425] gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425] Length = 501 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 84/483 (17%), Positives = 157/483 (32%), Gaps = 50/483 (10%) Query: 5 WTFHDLLQAIQ--GHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 +LL A+Q IG +P + +S +S + P F + G DG +F Sbjct: 1 MKLRELLTAVQSEITLIGDLPCHPALDREITSLSTNSWACQPGSLFIGMPGTRVDGGNFW 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 A+ + + + V V V DV A +A A + ++ +TG Sbjct: 61 ASAISA-GAVAALVSAAVPLPDPAEACVIPVQDVSRACGAIAAALYNYPTQRLKLVGVTG 119 Query: 116 SVGKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPV--------D 159 + GKTTT ++ L+ + G + + Sbjct: 120 TNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQLASAVKAG 179 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 F + E+ SH + + V T + HL +E+ SAKA +F Sbjct: 180 CPFAVMEV-SSHALAQGRVQGCT-FQVGVFTNLTQDHLDFHKDLEDYFSAKALLFSPGYL 237 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +G +N DD + + L + + T + ADF R + + Sbjct: 238 SGKAIINQDDPYGQRLIQQLEPAQVWTYSTS--DSTADFYTRDLNYLANGVEGILHTPEG 295 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 + +G N+L +G L ++ T AL F GR ++ + A +Q Sbjct: 296 EIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDIS 355 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D ++ + ++L P + R I V G G ++ Sbjct: 356 VIVDYAHTPDSLE-----NMLRAARPFVKHRMICVFG----CGGDRDRTKRPKMGGIAAQ 406 Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V ++ + + +P +++ + GD V++ Sbjct: 407 LADQVVVTSDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIA 466 Query: 450 -KS 451 K Sbjct: 467 GKG 469 >gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Ikeda] gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Orientia tsutsugamushi str. Ikeda] Length = 489 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 71/458 (15%), Positives = 150/458 (32%), Gaps = 49/458 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+I ++S P + FFA+ G G+DFI A+ GA L++ + + S + V Sbjct: 15 IRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQAPITSYSN----VI 70 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI------------- 133 V ++ + + + ++A+TG+ GKT+ Sbjct: 71 VVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAASIGTLGVI 130 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-----------LGMSHLGEIRFLTHLV 182 N + P M + L S G + + Sbjct: 131 TTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFVALEASSHGLDQNRLMDI 190 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + A T+ + HL + + AK E + G +N + + ++++K Sbjct: 191 KFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELSIIQSKITD 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + S + D Q+ + + + + + IG N+L+ L Sbjct: 251 EFGLKLLSV--EQQGDIQIIDVQSSLNGQKVHFRYKNSDYKFEVPVIGRVHITNILIALL 308 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + D I LS P +GR + +D + N + + Sbjct: 309 LAINIGLDSAKLIPLLSNLKPIKGR---MEKIQFGNCYAFVDYALTPNALATM----LTE 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416 + + +GR I + G + + + + V S + V ++ A++ Sbjct: 362 LRALNNKGRLITIFGGSEN--RDAIARRVQMGIVASKLS-DLVIVTDQDSGNEDPAAIRK 418 Query: 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + S +VD D++++ K Sbjct: 419 EILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKG 456 >gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991] gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991] Length = 525 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 144/352 (40%), Gaps = 19/352 (5%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDF 162 II ITGS GKT+ K +L ++ T SYNN +G+ ++ + Sbjct: 177 QHQNLHIIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMGITLTIRKQLQSLHEV 236 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+G H+ EI L V+P +++T I P HLS F +E I K + E L K Sbjct: 237 FLCEMGADHVHEISALMAFVKPSWSIVTAIGPQHLSTFQTMEHIVHEKMQAIECLPKD-- 294 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + I ++G AD++++ + + ++ ++G Sbjct: 295 --GIGFLNIDNAWIREYPIQNTCRIVTYGTHAAADYRIKDIVYSKQGASFKIHVKGVDYA 352 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 +G H N+ + + L ++ + E R + +T++ Sbjct: 353 FHTKLLGKHNVVNIAAGIAVAHCLGIELSVLQELTKHLPYVEHRLQ----LRPTSSYTML 408 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D++YN+N A+ VL+++ EG+ I V ++G++ ++ H+ L + L+ Sbjct: 409 DDAYNSNVEGATYALEVLAKM----EGKHIVVTPGFLDLGDMEENAHVRLGKQLTQVA-D 463 Query: 403 HVWLSGFH-VLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449 V L G H + L ++ HV+ E + F ++ VV+ Sbjct: 464 EVILVGQHQSKHIVKGLQQAQYDSRHVYVCENIQEAFELLKQLATKDSVVLF 515 >gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] Length = 552 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 75/479 (15%), Positives = 156/479 (32%), Gaps = 41/479 (8%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P +L + S+G V + GI++ + + EAF AI+G + G +F A + Sbjct: 19 PQRDLAELARRFGVRSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAE 78 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVG 118 +GA V+ + + S +P+ V+D L L+ ++A TG+ G Sbjct: 79 RGAVAVITDAEGAEIAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTGTNG 138 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLGEIR 176 KT+ +L L + + HI + ++R+ P +F M G Sbjct: 139 KTSVSHLLEGILGQLGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEA 198 Query: 177 ------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +A T + HL +++ + E AK +F + Sbjct: 199 VAVEVSAQALTRHRVDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRGVV 258 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL---RKWKQCSEQSWMEVQLQGKSM 281 S E++ + + + +AD ++ + G+++ Sbjct: 259 CLDSASGAEIVARAEIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRAL 318 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V IG HMA N + + ++ + + AL R + + Sbjct: 319 TTVVPVIGRHMAANAGLAIVMLLETGYAWERLVDALDGGRIDASLPGRTQLVSGPEGPAV 378 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + S A L+ + G+ + + G G+ + D+ Sbjct: 379 YVDF----GHSPDAFEKTLAAVRRVTPGKVVMLFGA---DGDRDATKRHDMGRTAV-LGS 430 Query: 402 SHVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVV 448 + ++ A++ L + + L + +GD ++ Sbjct: 431 DILVVTDHHPRHEDPDAIRAVLVEGARRARPDAEILEFTPPERAILEAVKLVGEGDAIL 489 >gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida W619] gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619] Length = 496 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 69/458 (15%), Positives = 146/458 (31%), Gaps = 39/458 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ + F A+ G DG D I A+ +GA V + + Sbjct: 16 DPLIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDALARGAAAVAYEQQGTHVLPITDV 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V ++ L+ +A ++ +TG+ GKT+ +++ AL ++ + IG Sbjct: 76 PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDALGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R+ + + +S + + IA Sbjct: 136 TLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHALEQGRVAALEFDIA 195 Query: 188 VITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGI 244 V+T ++ HL +E A AK + GL + + I Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLFAWPGLRCQVVNLDDGFGRRLAADFARRPSVDHI 255 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 +T +N+D L + + + + E M + + Sbjct: 256 ETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQGERTLRSQLLGRFNLSNMLAAVAT 315 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 ++ D + G+ R + ++D ++ + VL + Sbjct: 316 LMALDYSLDEILKVTPQLQGPVGRMQRLGGGEKPLVVVDYAHTPDALE-----KVLQALR 370 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 PH G+ + + G G L ++ V ++ + ++ Sbjct: 371 PHAHGQLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQAIFNDIR 426 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V + + +S DV+V+ K Sbjct: 427 PGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKG 464 >gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 486 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 76/461 (16%), Positives = 148/461 (32%), Gaps = 37/461 (8%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A V G ++DSR +A F A G +G DFI +K V Sbjct: 12 ASGYGLSPKEKDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 67 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + ++ A ++A + A+TG+ GKT+ E+ + Sbjct: 68 VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTI 127 Query: 133 IKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFL 178 SY+ + P + + D ++ S G ++ Sbjct: 128 TGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR 187 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + T+ + HL +E +AK +F+ + + D Sbjct: 188 SDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIA 247 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + G+ A +L + S+ + + ++G+S ++ IG + N L+ Sbjct: 248 HVQKRGLKLIDIGEKAEA-IRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALV 306 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 G+V D+ + AL++ P GR +R + N +D ++ + + Sbjct: 307 AAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----LRA 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413 + + PH EG V G G ++ HV ++ G Sbjct: 361 AIEALRPHTEGLLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAAT 416 Query: 414 L-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + K+ L + GD+V++ K Sbjct: 417 IRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 457 >gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 146 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I + F + G DG H F+ Sbjct: 1 MKLKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKT 136 GKTTT +L LS Sbjct: 114 GKTTTSYLLEKILSDYGYH 132 >gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] Length = 487 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 154/473 (32%), Gaps = 39/473 (8%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + + DLL + + + +DSR + P + F A+ G DG DFI A+ Sbjct: 1 MSSLDDLL----APWMALDTGVEFQQLVLDSRRVRPGDCFVAVAGHQVDGRDFIDSAIAL 56 Query: 64 GAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTT 121 GA V+ + D + + V GV ++ L+ LA A ++ T+I +TG+ GKTT Sbjct: 57 GAVAVLADADADGRQADRNGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTT 116 Query: 122 TKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELG------------ 168 ++ L+++ N G + D EL Sbjct: 117 VTQLCAQLLTALGHQAGVMGTVGNGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVAL 176 Query: 169 -MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + + + V T ++ HL + A AK ++F +F Sbjct: 177 EISSHGLSQSRVAALPVQVGVYTNLSRDHLDYHGDMAAYADAKRQLFALPGLRHGVFNLD 236 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D++ + S +L G + + + + +Q + ++ Sbjct: 237 DETGSRWHRELSGSLLALGYSIQGARCDGAYLTVEGVEYHDQGVRARVVSSFGQGTLNSP 296 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + L+ + + + LSV R C TL+ + + Sbjct: 297 LLGAFNLANLLAALGALLSLGYSLSDL--LSVVPQLHSAAGRMECFGTDSTPTLVVDYAH 354 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A L+ + PH G V G G S L + H+ ++ Sbjct: 355 TPDA----LSQALAALRPHCRGALWCVFG----CGGERDSGKRPLMAQAAEQGADHLIIT 406 Query: 408 GFH--VLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + A D + + E + GD+V++ K Sbjct: 407 ADNPRSEAFADIAAQMEAGLTGQAEVIEDRAAAVRRAFAQAQPGDMVLLAGKG 459 >gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiobacillus denitrificans ATCC 25259] gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus denitrificans ATCC 25259] Length = 506 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 162/471 (34%), Gaps = 55/471 (11%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 +G+ P VN DSR AP + F A G DG DFI AV +GA V+ D Sbjct: 27 ERLGLAPGELVN----DSRRAAPGKVFVAYPGDARDGRDFIPQAVAQGADGVLWEADHYQ 82 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134 +L+IP GV + + ++A +I +TG+ GKT+ + ALS++ Sbjct: 83 WDPALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTNGKTSVAHWIAQALSALG 142 Query: 135 KTYACIGSYNNHI----GVPLTLARMPVDVDFGI----------------FELGMSHLGE 174 + A IG+ N P L I + +S G Sbjct: 143 RKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARYRGEGAVACAMEVSSHGL 202 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 + + R +AV+T ++ HL ++ A+AKA + + Sbjct: 203 AQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKAR-----LFNWPDLEWAVLNVDDA 257 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + + + R + + +Q E+ +G A Sbjct: 258 FGQRLEGETRPARVAGYGFQRGAVVARGLQLSQAGMHLALQTDWGDAEIDAPLLGRFNAA 317 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+L L + + +D A +AL+ P GR + + ++ + Y+ P +++ Sbjct: 318 NLLAALTALLVSDVKLDDACRALAQVTPPAGR---MQTLGGEAHPLVVVD-YSHTPDALE 373 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413 ++ L +I+ G GR I V G G L + +W++ + Sbjct: 374 KVLATLREIA--GGGRLICVFG----CGGNRDKGKRPLMGAAAGRGADEIWVTSDNPRHE 427 Query: 414 --------LKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ L + V GDVV++ K Sbjct: 428 DPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKG 478 >gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] Length = 494 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 150/476 (31%), Gaps = 47/476 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + + LLQ + V ++G+ DSR + +AF A+ G H +I A++ GA Sbjct: 5 SLNTLLQ--GVVVVPSVFDVTIHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 ++++ ++ S + V ++ L KLA + ++ +TG+ GKT+ Sbjct: 63 SVILLESEQAGECSERSGALIVPVPELKVRLGKLADRFFEYPSQRLQLVGVTGTNGKTSV 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 + + L + C G+P TL + Sbjct: 123 TQYIAQLLQAA--GTPCGVLGTLGYGMPETLQPATHTTPDVVQANRVLAGILASGGRAAA 180 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + + AV T + HL + AKA++ E+ + +N Sbjct: 181 MEVSSHALDQGRIDRLTLTAAVFTNLTRDHLDYHGSMAAYGEAKAKL-FSREELRFVVIN 239 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD F L + + +S + + + + + + Sbjct: 240 VDDPFGRKLYHQLEGKCDRLRFSLHEPQAELWLKEFCAL-DNGFRAVLDGRWGEFTIEAP 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G A N+L + V L DV + P GR + + + Sbjct: 299 LMGRFNASNVLAAVATVMALGVDVTQVQHGVRRLVPPAGRLQVFTAGDGARAVVDYAHTP 358 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A + L+ + PH GR I V G G S + V + Sbjct: 359 DA-------LNNALAALRPHVSGRLICVFG----CGGDRDSGKRPEMAQQAENGADLVIV 407 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + + + D+V+V K Sbjct: 408 TDDNPRTETPSAITADIMAGFIAPEKIQLIHSRAQAIAAALALAGPDDLVLVAGKG 463 >gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum GMI1000] gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum GMI1000] Length = 514 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 80/480 (16%), Positives = 143/480 (29%), Gaps = 53/480 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65 +L ++ H ++ D+R + + F A G DG I A++ G Sbjct: 19 VLDWLRAHVPAGAD------LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGV 72 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122 V+ + VD + LA +I +TG+ GKT+ Sbjct: 73 SAVLAEAHGYVVPADAPARILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167 + + ALS + A +G+ + +LA + + + Sbjct: 133 SQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLHRAGARAVA-M 191 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S G + R IA+ T + HL + E AKA +F + Sbjct: 192 EVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRD 251 Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 D + LL + G+ + + + +V Sbjct: 252 DAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRAT 311 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V +G N L LG++ + A+ L P GR +R+ Sbjct: 312 VHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGEDGPLVVVD- 370 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 Y P +++ + L+ I+ G+ AV G G ++ Sbjct: 371 ---YAHTPDALEQTLRALAPITGARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLAQ 423 Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 HV L+ + + + D + E L DV+VV K Sbjct: 424 HVVLTSDNPRSEDPQLILDMIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAGKG 483 >gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] Length = 516 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 138/459 (30%), Gaps = 51/459 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLS 82 V I+ DSR + F AI G DG F+ A+ GA +V + A + Sbjct: 43 VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102 Query: 83 IPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V A A+ ++ +TG+ GKT+T ML + I Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKHLRLVGVTGTNGKTSTATMLHRLFERLGYKSGLI 162 Query: 141 GSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 G+ N IG + L RM + + +S + + Sbjct: 163 GTVENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHV-FMEVSSHAAHQRRIGSLEFV 221 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 + T + HL ++E AK F+ L +N DD ++ + A Sbjct: 222 GGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPNAFALVNADDRNGSVMLQNTSAKK-- 279 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 Y++G ADF+ + + + + + + + G ++ + + Sbjct: 280 --YTYGLKSFADFKAKVVEGDFRGTELLLNDRSVW--IPLVGAFNAYNITLVYAAARLLL 335 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + D ++ALS EGR + G Y P ++ + + + P Sbjct: 336 PDLEQDVLLQALSTIETAEGRFEVISEGGRIGIV-----DYAHTPDALIKVLETIRPLVP 390 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 G V G + + + L+ + + Sbjct: 391 QGGRVITVVGA-----GGNRDRGKRPIMAQEAFRRSDLLILTSDNPRDEDPQAIINEMMA 445 Query: 417 ALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451 L +D DV++V K Sbjct: 446 GLTPEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKG 484 >gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC1989] gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC1989] Length = 556 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 84/524 (16%), Positives = 154/524 (29%), Gaps = 93/524 (17%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L T L QA+ + G + VN +SIDSR+I+ + F A++G G FI A++K Sbjct: 14 LGTL--LPQALSIYLDGAISAIPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKK 71 Query: 64 GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATI----------- 110 GA ++ T IPV + + L+++A + Sbjct: 72 GAVAILSATTASDVFVEYRDEIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGK 131 Query: 111 -----------------IAITGSVGKTTTKEMLTI------------ALSSIKKTYACIG 141 + + G++G + ++ + Sbjct: 132 TSCAQIYAQLSAFNGSAVGVIGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQ 191 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE-----------------------LGMSHLGEIRFL 178 S G L+L + I + +S G + Sbjct: 192 SRAGQPGYSLSLVSTGMTTPDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGR 251 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 + + A+ T + HL + +A A+ T + + D F Sbjct: 252 VSALDINSAIFTNLTHDHLDYHGDM--VAYGNAKAKLFEMPTINLAIVNLDDEFSHELTT 309 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 A ++ I + NAD L + Q ++ + + IG N+L Sbjct: 310 KIASTVRVISYSIDNANADLYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSNLLA 369 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L + S A + R NQ ++ + + A + Sbjct: 370 VLSVFSQQQNFSQVVASAQY----LQPISGRMESVENQEGIQVVVDFAHTPDA----LDN 421 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410 VL +S + +G V G G L ++ HV ++ + Sbjct: 422 VLQAVSEYVDGEVYCVFG----CGGDRDQSKRPLMAAVAERYADHVVVTNDNPRSENPTD 477 Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + H E + F GD+VV+ K Sbjct: 478 IAQQVVQGFSSNNHC-VIEEREEAIRFAIHHAKIGDMVVIAGKG 520 >gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] Length = 489 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 86/472 (18%), Positives = 155/472 (32%), Gaps = 43/472 (9%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 +LL I+ + +N + +DSR+ + F A G D H FI + V++G + Sbjct: 4 SELLSKIKAKKLYGTFPEHINKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRM 63 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKE 124 +VV+ I L I V D L A ++ K T +TG+ GKT+ Sbjct: 64 IVVDH----YIEGLDIGQVVVRDTLQA-ARIFTQHVMDFPSHKLTTYGVTGTNGKTSVAT 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP--------LTLARMPVDVDFGI------FELGMS 170 M+ ++ A +G+ + + + + MS Sbjct: 119 MIHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMS 178 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G T V +A+ T + HL +E KA +F L + Sbjct: 179 SHGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVN 238 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + + + + ++G +N D + K+ ++ ++E+ IG Sbjct: 239 GDDDYSKELIIASPREVITYGIEQNTDIKATNIKESIHGIAFTLETPDGNVEITCPYIGR 298 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 NML L + + +A P EGR + L + + Sbjct: 299 FNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLEVLDRNLPIDLVIDYAHTPDG-- 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 ++ + P G+ I ++G M GE S ++ +V + Sbjct: 357 -----MNKLIDALEPFKRGKMIFLIG-MA--GERDLSKTPEMG--AVACRADYVIFTPDN 406 Query: 409 ---FHVLALKDALPRS-IHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454 L DAL H +Y + GD+VV+ +S Sbjct: 407 PANDDPRKLTDALESGATHTNYVSFLDRAEGIRHAIAMSEPGDMVVL-ASKG 457 >gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium vanbaalenii PYR-1] gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium vanbaalenii PYR-1] Length = 497 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 78/462 (16%), Positives = 140/462 (30%), Gaps = 48/462 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---G 79 P V G+++ + P + F A+ G G + AV +GA V+ + A I G Sbjct: 17 PDVQVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAEIASRG 76 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK-- 135 + +PV D L +LA A R +I +TG+ GKTTT ++ L + + Sbjct: 77 APDVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRVA 136 Query: 136 -----TYACIGSYNNHIGVPLTL---------ARMPVDVDFGIFELGMSHLGEIRFLTHL 181 I G+ + VD + E+ SH + + + Sbjct: 137 GLIGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEV-SSHALTLGRVDGV 195 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + T ++ HL +E+ AKA +F+ T + A Sbjct: 196 S-FAVGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARA 254 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 T+ + G AD++ + + + V + + L Sbjct: 255 RRPVTVSTTG---PADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLA 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 I + + +A G+ Q F L+D ++ +VL Sbjct: 312 IALLDA-VGVSPEQAAPGVRDATVPGRLESVDRGQPFLALVDYAHKPGA-----LRAVLQ 365 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 + GR V G G + ++ V ++ + Sbjct: 366 TLREQCTGRLAVVFGA----GGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRA 421 Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L A V GD+V++ K Sbjct: 422 AILAGAAGARAEVVEIGDRRAAIGHAAGWARAGDIVLIAGKG 463 >gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624] gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624] Length = 499 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 79/465 (16%), Positives = 149/465 (32%), Gaps = 57/465 (12%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 PQ +G ++DSR + + F A+ + F A+ GA V+ T++ + Sbjct: 18 PQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKT--RTFAEAALTNGALAVISETELGVAN 75 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134 + DV + + ++ IIA+TG+ GKTT ++ L S + Sbjct: 76 E------WVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128 Query: 135 KTYACIGSYNNHIGVP---------------LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 + + + +P L S G + Sbjct: 129 QQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRL 188 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + IAV + ++ HL +E A AKA +F+ + D ++K+ Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFNSLKVAVINLDDAHADLMIKSAK 248 Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + I ++ ++N D+ + + + Q S V +G+ +N++ Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENLIA 308 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 L ++AL F PK + + + + A I Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412 VL + H + AV G G L +L + V L+ + Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKG 461 >gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 491 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 157/457 (34%), Gaps = 41/457 (8%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G + + + +S DSR I FF + G +DGH F A +KGA +V + + Sbjct: 19 GTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQFAKMAEEKGAVCLVASKHV----- 73 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS-----------------VGKTTT 122 + IPV V+DV+ + LA+ ++ I + K + Sbjct: 74 DVKIPVVYVEDVIKTMAFLAMRFYHDPSGSMSLIGVTGTNGKTTTTHIIRHLFEKNKKSC 133 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 + T + ++ + + + + +LA+M + F SH + + V Sbjct: 134 GMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLAKMKEEGVFICTSEVSSHALVMGRV-QNV 192 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 ++AV T + HL + E AK+ +F L + + K + Sbjct: 193 DFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFAQLGSGNNGKIAILNKDDTYAKVIASRC 252 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 Y K +A+F + + ++ + QG V+ IG QN L L Sbjct: 253 NATIWYYSTKDPSAEFYAKDMVYLASKTEFTLVFQGLEYPVISPLIGEFNVQNALAALAA 312 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L ++ I+ALS F EGR + L + + ++ Sbjct: 313 YYALERHLEKGIEALSSFSGVEGRMQTIENDLGIHAIVDFAHTPDG-------LEKAMAA 365 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDA 417 + R I ++G G S DL + Y+ +V + + + Sbjct: 366 LKKLNHKRIITMIGHDG--GNRDNSIRQDLGRIALEYS-DYVVFTSENPREEDPMKIMKE 422 Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKS 451 + + VH+ E + + GD++ Sbjct: 423 MVNGLEVHHYEFVKDRHKAIDRVVALGQKGDILFFTG 459 >gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 255 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 32/212 (15%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83 ++DSR + + F A+KG DG FI A+++GA LV+ D L Sbjct: 25 TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84 Query: 84 -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 V V ++ L+++A A K T++ +TG+ GKTT+ ++L Sbjct: 85 DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180 G+ + I + +S G ++ Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + +AV T ++ HL +EE A AK Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFR 234 >gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 29805] gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Borrelia burgdorferi 29805] Length = 339 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 31 SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81 S+DSR I +FA KG DG F+ + + G + + + + Sbjct: 32 SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + +V+ L LA ++ IAITGS GKTTTKEML LS KTY G Sbjct: 92 GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151 Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 + N+ IG+PL++ R+ + ++ +FE+G+S++GE+ L+ +++P I +IT I+ AH+ F Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 ++ IA K++I + + D + +AK +K +Y Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYF 259 >gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Paulinella chromatophora] gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Paulinella chromatophora] Length = 508 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 71/484 (14%), Positives = 142/484 (29%), Gaps = 52/484 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + LL+A + + I +S+ I P F + G + G F A+ GA Sbjct: 4 SLSSLLKATNLKFGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYSALDSGA 63 Query: 66 -------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGS 116 V+ + +VA+ + + + LA + +I +TG+ Sbjct: 64 ITALGRKIAVISDLPLVANTLTNADKQIA-----HWTSLLATNFWQQPSRWMILLGVTGT 118 Query: 117 VGKTTTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTLA-----RMPVDVDF 162 GKTT ++ ++ + S P + V+ Sbjct: 119 NGKTTVTHLIEHLSTASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVEAGS 178 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I + +S ++ + AV T ++ HL +E +KA +FE Sbjct: 179 QIGAMEVSSHALNQYRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLLANH 238 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 L +S + LG S + +A+ +R + Sbjct: 239 GPLAVINSDDLWGARLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLGEGY 298 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGF 338 +GY N+L +G++ A+K + R Y L+ Sbjct: 299 FSSPMVGYFNLMNLLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLDLSP 358 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +ID ++ + L +G I V G G + + Sbjct: 359 SVIIDYAHTPDGLE-----KALIAARSFVKGSLICVFG----CGGNRDKRKRPIMGETAA 409 Query: 399 YNISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + ++ + + +P V + S+ D++++ Sbjct: 410 RLADEIIVTSDNPRTENPEEIIKDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILI 469 Query: 450 --KS 451 K Sbjct: 470 VGKG 473 >gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] Length = 535 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 36 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 96 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + AKA +F+ Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502 Query: 450 KS 451 K Sbjct: 503 KG 504 >gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis H37Rv] gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium bovis AF2122/97] gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis H37Ra] gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis F11] gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis CDC1551] gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 1435] gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 605] gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu009] gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu007] gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu008] gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu010] gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat e ligase MurE [Mycobacterium tuberculosis H37Rv] gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium bovis AF2122/97] gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE [Mycobacterium tuberculosis H37Ra] gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis F11] gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 1435] gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 605] gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu007] gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu008] gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu009] gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu010] gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis W-148] gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 4207] Length = 535 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 36 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 96 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + AKA +F+ Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502 Query: 450 KS 451 K Sbjct: 503 KG 504 >gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] Length = 517 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 18 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 77 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 78 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + AKA +F+ Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 372 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 373 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 424 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 425 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 484 Query: 450 KS 451 K Sbjct: 485 KG 486 >gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis CDC1551] Length = 581 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 82 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 141 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 142 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 201 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 202 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 261 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + AKA +F+ Sbjct: 262 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 321 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 322 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 381 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 382 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 436 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 437 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 488 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 489 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 548 Query: 450 KS 451 K Sbjct: 549 KG 550 >gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis C] gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis 210] gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN R506] gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN V2475] gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis C] gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis CDC1551A] Length = 521 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 22 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 81 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 82 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + AKA +F+ Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 261 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 262 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 321 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 322 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 376 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 377 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 428 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 429 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 488 Query: 450 KS 451 K Sbjct: 489 KG 490 >gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN 4207] gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu001] gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu004] gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu011] gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu003] gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu006] gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu001] gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu003] gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu004] gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu006] gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu011] Length = 517 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 18 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 77 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 78 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + AKA +F+ Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 372 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 373 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 424 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 425 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 484 Query: 450 KS 451 K Sbjct: 485 KG 486 >gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct] Length = 477 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 54/438 (12%), Positives = 123/438 (28%), Gaps = 47/438 (10%) Query: 41 EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100 E F A+KG DG+ +I + KG LV+ ++ VF + ++ L+ LA Sbjct: 26 EVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAK 81 Query: 101 AARLRSKA-TIIAITGSVGKTTTKEMLTIALS-------------SIKKTYACIGSYNNH 146 K II ITG+ GKT+ + L + ++ Sbjct: 82 WFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTL 141 Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 + + + E+ S + + +A+ + ++ HL ++ Sbjct: 142 DILSLYKTISYYKNYQNLVMEV--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDN 199 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 AKA++ + + + + + + K K Sbjct: 200 YFEAKAKL-----FQFKRLKKAIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKS 254 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 + M + L S+ I L P +G Sbjct: 255 IEGIKTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKG 314 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R + + + +A L ++ + + G G Sbjct: 315 RMEVIELDNDIKIVIDYAHTPDA-------LEKALQTLNSYNPNNLWCIFG----CGGNR 363 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLF 436 + + ++ S + ++ + ++ + + + F Sbjct: 364 DTSKRPIMAQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRF 423 Query: 437 IQSSLVDGDVVVVKSSNS 454 + GD++++ +S Sbjct: 424 SIENANQGDIILL-ASKG 440 >gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli GR56] Length = 256 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 19/213 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ G ++G+S DSR +AP AF A+ G DG FI+ A +GA + + + Sbjct: 34 LEAQLEGPAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIVDAAGRGAAVAIASQP 93 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133 + A SIPV V + L+ A R T++A+TG+ GKT+ + Sbjct: 94 VDA-----SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148 Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179 A IG+ + + + + S G + Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 V+ A T + H+ +E +AK Sbjct: 209 DGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMR 241 >gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 461 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 69/464 (14%), Positives = 142/464 (30%), Gaps = 45/464 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + +P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ AS G + +PV + + L+ LA ++A+TG+ GK Sbjct: 61 AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165 TTT ++L + + + N +G + Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL + +AK ++ I Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L + A+ + + + + + + + E+ Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIE 300 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L+ L + L + +K + P GR + + Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ V Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQS 439 ++ + + + + V E S Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIS 453 >gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcaceae bacterium D16] gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcaceae bacterium D16] Length = 665 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 80/490 (16%), Positives = 141/490 (28%), Gaps = 59/490 (12%) Query: 2 NPLWTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54 P+ T D L + ++ G+ V G++ DSR +AP F KG H+ Sbjct: 3 IPVHTLGDYLDLLSEQNLLAAPIPDGLDRNQRVTGLTCDSRQVAPGTLFI-RKGAHFQ-T 60 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112 F+ A +GA V + +P + D AL LA K +I Sbjct: 61 KFLEMARDQGAMACVSQEEDTVP----GLPRIAITDTRKALAPLADRFYDHPSGKLKVIG 116 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACI----------------GSYNNHIGVPLTLARM 156 ITG+ GK++T + L +++ + PL L R Sbjct: 117 ITGTKGKSSTAYYMKSILDRYQESQGRGETGVVSSIDTYDGVERFESHLTTPEPLDLQRH 176 Query: 157 PVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKA 211 + E + +S + A I H+S E+ ++K Sbjct: 177 FANAAQTGLEYVTMEVSSQALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKL 236 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 +IF + +N D + + + A G I K A + Q Sbjct: 237 KIF---AQAHISCVNLDCDHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQIL 293 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 ++ + ++ G +N L + L L Sbjct: 294 FTLRTPRYTRQMRLTMPGLFNVENALGAAALCEALDIPEWAVYDGLVRARVPGR----ME 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 N L Y N S + S + + + E V G G+ + D Sbjct: 350 VYANADGRVLSIVDYAHNRLSFETLFSSVR--AEYPERELAIVFGCP---GKKAYDRRHD 404 Query: 392 LAEVLSLYNISHVWLSGFHV-----LALKDALPRSI-----HVHYSETMDGLFLFIQSSL 441 L E + V+L+ L + + ++ Sbjct: 405 LGE-AAGAWCDRVYLTEEDSGEEDTLDICQEIRPNVEKGKARCRIIPNRGEAIRQAVLES 463 Query: 442 VDGDVVVVKS 451 V+++ Sbjct: 464 EKPTVLLLTG 473 >gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis F0405] gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis F0405] Length = 481 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 74/486 (15%), Positives = 150/486 (30%), Gaps = 66/486 (13%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G + + IS DSR I+ FF +KG ++ +++ A+ G G V D Sbjct: 22 VNGEYYYHLEGTSFDAISYDSRKISASTLFF-VKGANFK-KEYLEQAISNGLGFYVSEKD 79 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 + IP V+D+ A++ +A+ + ++A TG+ GKTT L Sbjct: 80 Y-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAAYFAYHILK 134 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEI 175 + G + + D I E+ S + Sbjct: 135 QSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAEAVANDRTHLIMEV--SSQAYL 192 Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + + + V I+P H+ E+ K + + + + +N D F Sbjct: 193 VKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMKN---SQAVVINSDMDHFS 249 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +LK + S +++ + + + + + Sbjct: 250 VLKEQVEDQEHDFYGSQSENQIENSKAFSFSATGKLAGDYDIQLIGHFNQE--------- 300 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + + G+ G ID ++N + Sbjct: 301 ----NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS--- 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWL 406 +LS + H G VLG GE + H ++ L+ + ++ Sbjct: 354 --LKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY--- 408 Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINL 463 LA+ + + I V + + + D V++ Y+++N Sbjct: 409 --EDPLAIAEEISSFITRPVEKIADREEAIQRAMATTSKPEDAVIIAG-KGADCYQIVNG 465 Query: 464 LLEEFP 469 + EE+P Sbjct: 466 IKEEYP 471 >gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas naphthalenivorans CJ2] gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas naphthalenivorans CJ2] Length = 496 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 85/475 (17%), Positives = 149/475 (31%), Gaps = 45/475 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L T + IG +S DSR + F A G DG +++ A+ Sbjct: 3 LHTPEQAACWLHERVIGT--------LSADSRKAGQGDGFIAWPGAATDGRNYVNAALAA 54 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121 GA +V + G V + A +A A + + AITG+ GKT+ Sbjct: 55 GASACLVEHAGAQAYGFNDDRVATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTS 114 Query: 122 TKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIFEL 167 T L AL + + +G+ + R D F L Sbjct: 115 TAWWLAQALGRLGRKCGIVGTLGIGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACAL 174 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S +G R IAV T HL + + + AK +F I Sbjct: 175 EASSIGLEEGRLDGTRIQIAVFTNFTQDHLDYHASMPDYWRAKQMLFNWPGLRAAIINVD 234 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D E + + A +++ + A Q + Q + +V G+ + Sbjct: 235 DSRGLE--LSAALAGTSLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPM 292 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G + N+L + + + + A+ A + P GR + Y Sbjct: 293 VGLYNVSNLLGVMASLRAMDVPLADAVAACADLLPVPGRTETLAVPGLPLVVID----YA 348 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ ++ L+ ++ GR V G G + L + N + ++ Sbjct: 349 HTPDALEKVLTALNPVAQGRGGRLWCVFG----CGGDRDAGKRPLMAAAAEKNADQLVIT 404 Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L R H E DVV++ K Sbjct: 405 SDNPRSEDPVTIIGQMLKGLSRPQVAHVQEDRRAAIAHALQLAQPQDVVLLAGKG 459 >gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp Length = 535 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 148/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 36 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 96 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + A A +F+ Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRAR 275 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502 Query: 450 KS 451 K Sbjct: 503 KG 504 >gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter bemidjiensis Bem] gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter bemidjiensis Bem] Length = 505 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 67/428 (15%), Positives = 137/428 (32%), Gaps = 37/428 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL + + + + DSR +AP FFA++G DG +F+ AV+ G Sbjct: 1 MKLAQLLNCLASPELSGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + + V V D A++ +A A ++ ITG+ GKTTT Sbjct: 61 AVAIVADRPCACP----GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTT 116 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLAR-----------MPVDVDFGIFE 166 ++ + A +G+ + G P T + + E Sbjct: 117 TYLVEGIMEQAGVPAAVLGTISYRFGETNIPAPNTTPESVDLQAILRELVDHGARGAVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224 + SH E + + +A+ + + HL +E +K +F Sbjct: 177 V-SSHALEQHRVDGCL-FDVALFSNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + ++ + AD + + + + + + + Sbjct: 235 RRAVVNLDDPFGPRIAEKAAAPVLTYSMTGKADISVAEAEFSVDGIRCRLNTPVGEISLA 294 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L +G L + + GR + T++ + Sbjct: 295 SELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGR---LERVETEEGITVLVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A +VLS +S R I + G G + ++ Sbjct: 352 YAHTGDA----LENVLSTVSELKTDRIITIFG----CGGDRDKGKRPVMGEIAARYSDLA 403 Query: 405 WLSGFHVL 412 ++ + Sbjct: 404 VITSDNPR 411 >gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CMR15] Length = 514 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 141/481 (29%), Gaps = 55/481 (11%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65 +L ++ H ++ D+R + + F A G DG I A++ G Sbjct: 19 VLDWLRAHVPAGAD------LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGV 72 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122 V+ + + VD + LA +I +TG+ GKT+ Sbjct: 73 SAVLAEAHGYVVPANAPARILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 + + ALS + A +G+ G L I Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDALVATGFTTPDAIQLQHSLADLHRAGARAIA 190 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S G + R IA+ T + HL + E AKA +F + Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 D + LL + G+ + + + +V Sbjct: 251 DDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRA 310 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G N L LG++ + A+ L P GR +R+ Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGEDGPLVVVD 370 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y P +++ + L+ I+ G+ AV G G ++ Sbjct: 371 ----YAHTPDALEQTLRALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422 Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 HV L+ + + + D + E L DV+VV K Sbjct: 423 QHVVLTSDNPRSEDPQLILDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAGK 482 Query: 451 S 451 Sbjct: 483 G 483 >gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Thermotoga neapolitana DSM 4359] gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Thermotoga neapolitana DSM 4359] Length = 490 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 86/487 (17%), Positives = 156/487 (32%), Gaps = 54/487 (11%) Query: 5 WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T + ++ + ++GIS + + + F KG +D H+ I ++ Sbjct: 1 MTISTIASILKDQILKVNAPMDLEISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIE 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL------------------ 104 KG +V + P V D KLA Sbjct: 61 KG-----AVAVVVEREVNFDAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGTNGKT 115 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 + I + S+G + LT L ++ L+ + D Sbjct: 116 TTTLMIYHMLTSMGVKGSA--LTTVLKNVLGKTYYEDITTPDAITVLSAMKENKDGGGRF 173 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 F L +S ++ VR + + T I+ HL E AK +F+ L+ G Sbjct: 174 FALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGFAV 233 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 LN S +FG S+NA+++L + E + ++ ++V Sbjct: 234 LNESLSDA--------LHRRVRKVTFGTSRNANYRLGNIEVSWEGTSFVLETPDGFLKVF 285 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG A N + + L D ++L F EGR + + A GF ++D Sbjct: 286 TRAIGDFNAYNAAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVDF 345 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +++ + +L + +GR I V G G S + + + Sbjct: 346 AHSPDALE-----KLLKNVRKISKGRVIVVFGA----GGNSDRGKRPMMSRVVSELADVM 396 Query: 405 WLS-----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 L+ G + L + ++ + GD VVV Sbjct: 397 ILTTDDPRGEDPEQIMEDLIKGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAG-RGH 455 Query: 456 GFYRLIN 462 Y++I+ Sbjct: 456 ERYQIID 462 >gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus TCF52B] gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus TCF52B] Length = 514 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 130/356 (36%), Gaps = 13/356 (3%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MP 157 A R +A+TGS GKT+TK L ++ K+ SYN +G+ T+ + Sbjct: 158 AKRKISRLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTIREKLD 217 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + I EL + L L++P I+++T+I H F ++ I Sbjct: 218 KSHEVFIVELAENDNYGYSKLLELIKPQISILTSIGIQHFEEFESLDNIIQNFKNFILDE 277 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 I N DD + + + + ++ + Sbjct: 278 RSGKKIIANIDDENIKNVLENIDTKKEIITCAINEKNAQYKVEELKISKDGANFAIITPN 337 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + + GY +N+L+ + L V+ I+ + R + + Sbjct: 338 NQKFYFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKPKHRLE----IVRND 393 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+ID+++N+NP K A+ L+ + I V E+GE H + + ++ Sbjct: 394 TITVIDDTFNSNPKGFKMALEYLALFENKRK---ILVTPGFVELGEKEDEEHYKIGKEIA 450 Query: 398 LYNISHVWLSGF-HVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 Y + V+L G + L S + E ++ + ++ L GDVV+ Sbjct: 451 KY-VDVVFLIGEKRTEKIYKGLIDSNFEGKIFIVEDLNEVIEKFKTFLQPGDVVLF 505 >gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. ORS278] gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Bradyrhizobium sp. ORS278] Length = 486 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 79/472 (16%), Positives = 138/472 (29%), Gaps = 40/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 HDLL G G+ P V+G++ DSR++ P + FFA+ G DG FI AV Sbjct: 1 MKLHDLL----GDQAGLDPRVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFIAAAV 56 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + A G L +P + + AL A R ATI A+TG+ GKT+ Sbjct: 57 A---AGAIAVAGHEAPAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAVTGTSGKTS 113 Query: 122 TKEMLTIALSSIKKT---------YACIGSYNNHIGVPLT---LARMPVDVDFGIFEL-- 167 S+ + + + P ++ G+ L Sbjct: 114 VAAFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAF 173 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G ++ VR T ++ H+ + +AK +F L G + Sbjct: 174 EASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVPPGGPAVIS 233 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + G N + + + + + Sbjct: 234 ADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQHCGRITFLR 293 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + A + L + EG R + + + Sbjct: 294 LPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVGEHNGAPIFIDYAH 353 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A L + P+ + + + V G G S L ++ V ++ Sbjct: 354 KPDA----LAKALHALRPYAQRKLVVVFGA----GGDRDSGKRPLMGEIAAAGADRVIVT 405 Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + S L GD +V+ K Sbjct: 406 DDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKG 457 >gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] Length = 534 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 77/469 (16%), Positives = 152/469 (32%), Gaps = 50/469 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85 V G+S +S++I P F + G DG +F A++KGA +V+ ++AS + V Sbjct: 41 VTGLSTNSQAIEPGMVFIGMPGTRVDGGEFWQSAIEKGAIAALVSPSVLASKPNTSDALV 100 Query: 86 FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK-------- 135 ++ +LA + + I+ +TG+ GKTTT ++ L+ ++ Sbjct: 101 LTTSNIAKVCAELAASFYAQPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTL 160 Query: 136 TYACIGSYNNHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 G + + + + +S + T + +AV Sbjct: 161 YTRWPGYEKIAVHTTPFSIDLQAELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVF 220 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL +++ AKA +F G +N D + + L + T Sbjct: 221 TNLTQDHLDYHKDLDDYFEAKALLFSPDYLKGHAIVNQKDPYGQKLIERIGKHKTLTYD- 279 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 ++AD + + + +G +N+L +G L Sbjct: 280 -ITDRSADLYTSDLRYSPIGVSGTIHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVS 338 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID-------ESYNANPASMKAAI----- 357 +D + AL F GR +R + + +++ ++ S+ Sbjct: 339 LDQIVVALPEFKGVPGRMERVQISTGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPD 398 Query: 358 ---SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 + L P EGR I V G G ++ V ++ + Sbjct: 399 SLENALKAARPFIEGRLICVFG----CGGDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTE 454 Query: 413 ---ALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + I + GD +V+ K Sbjct: 455 SPEQILEDVVAGIEGPLDEEQVIGDRAAAIRSAILNAQPGDGIVIAGKG 503 >gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] Length = 517 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 81/455 (17%), Positives = 149/455 (32%), Gaps = 42/455 (9%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---V 85 + DSR IAP + F A G DG + A+ +GA +V VA+ + P + Sbjct: 35 SLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAFAFPAAPGASL 94 Query: 86 FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 + + A +A + ++A+TG+ GKT+T L AL+ K+ C + Sbjct: 95 ASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNGRAKSPVCALAG 154 Query: 144 NNHIGVPLTLARMPVDVDF----------------GIFELGMSHLGEIRFLTHLVRPHIA 187 +GVP L + + S +G + + A Sbjct: 155 TLGLGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEASSIGLEQGRLAGTQIRAA 214 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + T HL + AK +F+ + D + +L A + + Sbjct: 215 IFTNCTQDHLDYHGSMAAYWRAKRALFDWPGLQAAVINIDDPAGAQLHAE--LAGRVPDL 272 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +S A R ++ V+ + IG++ QN+L L + L Sbjct: 273 WSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGHYNLQNLLAVLATLRSLG 332 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A++A + P GR ++ A Y P ++ A+ L ++ Sbjct: 333 WPLAEALQAGAGLQPVPGRMQQLALAGQPLVVVD----YAHTPDALAKALQALRPLAARR 388 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418 GR V G G + L + + L+ + + + + Sbjct: 389 AGRLWCVFG----CGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPDAILRQILQGI 444 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V + DV+++ K Sbjct: 445 SRRRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKG 479 >gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 508 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 77/486 (15%), Positives = 145/486 (29%), Gaps = 46/486 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ L T L + P+ ++ DSR IA + F A G DG +I +A Sbjct: 1 MSILTTTA-LASILD-WLAANAPKAE---LASDSRRIAQGDVFVAYPGDEADGRSYIANA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 +++GA V+ + +DD+ ++A A +AITG+ G Sbjct: 56 IERGAQAVIYEAAGCTWDAEWDVAHLAIDDLKEHAGEIAAAYYAHPDRSMFTVAITGTNG 115 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFGI----------- 164 KT+ + L ALS + + A IG+ G + + Sbjct: 116 KTSCAQWLGSALSRLGQPTAVIGTLGVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSN 175 Query: 165 -----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGL 217 + S +G + + +A+ T HL + A A + GL Sbjct: 176 LGATALAIEASSIGLHQGRLSGMHFDMALFTNFTRDHLDYHGDMAAYEEAKAMLFDWPGL 235 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + + A T Y+ K + + V Sbjct: 236 QHAVINLDDAMGVRLVQRLQSRQADVGITGYTLSDKKIDGIAVLRATDIRSNQSGTVFQL 295 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 S N+ LGI+ IL A A++ R + Sbjct: 296 ESSAGNTQVKTQLVGQFNVSNVLGIIGILLAKGIALQDAVNAVEALTAVPGRMQQLGGGE 355 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++ + Y P +++ ++ L ++ G V G G+ + + Sbjct: 356 APLVVID-YAHTPDALEKTLATLRSVANDRGGELWCVFG---CGGDRDPGKRPQMGK--V 409 Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVV 447 H+ ++ + + + + E L+ DV+ Sbjct: 410 SMAADHIVVTTDNPRNEEPANIIGDIVAGITAPKNAPQIIEDRASAILWAGRHAARQDVI 469 Query: 448 VV--KS 451 ++ K Sbjct: 470 LLAGKG 475 >gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 492 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 148/472 (31%), Gaps = 45/472 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + ++ I DSR AP F I G D H+F KG Sbjct: 1 MKLEQLLEGVPFTLAQGSLDTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFAADCAAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 +V+ D+ S + V V+ A+ ++ K T+I +TG+ GKTTT Sbjct: 61 VSALVIQHDIDLSALP-GVTVVKVESSRYAMALMSANLFGNPSRKMTMIGVTGTKGKTTT 119 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168 M+ L + Y P + R +D + Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKETANTTPESYELQKTFREFLDAGCDTALME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V ++ V T ++P H+ + ++ + ++ +N D Sbjct: 180 VSSQGLMMDRVAGVHYNVGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCDVGVVNID 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E L + ++G+++ AD++ ++ ++ V+ + + + Sbjct: 239 DENTEALLE----GHTCKLITYGRAEQADYRETGFELLRTHDFLGVKFHVTGKDEMDVKV 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ L + + +A+ K R FT++ + Y Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDQAIHDGLGKCVVKGRVELVPISKKFTILLD-YAH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 N S ++ ++ L PH + V G G + L+ Sbjct: 353 NEVSTESLLTTLRAYKPHR---LVVVFG----CGGNRSKLRRYGMGEICAKMADFSILTE 405 Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + P + V + +GD++ Sbjct: 406 DNNRFEKVEDILADIRVGMNKGNPDAKFVEI-PDRLDALHYAVDHAQEGDLI 456 >gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 529 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 84/487 (17%), Positives = 152/487 (31%), Gaps = 44/487 (9%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 + + G+++ S PQ F AI G G F A + GA V+ + Sbjct: 36 GAETAWADLGTRIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAAKEAGAVAVLTDAAG 95 Query: 75 V--ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL 130 A L +PV VDD + LA A +A+TG+ GKTTT ++ AL Sbjct: 96 ASRAVSEGLGLPVVVVDDPRSHVAALAAAVYGHPARDLVTLAVTGTNGKTTTSYLMRAAL 155 Query: 131 SSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIR 176 +++ A G+ +G V + + G + S Sbjct: 156 AAVHPRAALCGTVETRVGPVSFEAERTTAESPVVQRFLALARECGEGAAVIETSAHALSL 215 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 V +A T + HL + +E +AKA +F E + DD + L Sbjct: 216 HRVDGVVFDVAAFTNLQHDHLDYYGDMEGYFNAKALLFT-PEHAKRAVVCVDDEWGRRLA 274 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQN 295 A + + + ++ + EV +G QN Sbjct: 275 ASAPIPVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVDPDGTGHEVRMPILGEVNVQN 334 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + L +D A++AL GR ++ ++D ++ Sbjct: 335 TAVALVSAVAAGVPLDGALRALEAAPQIPGRMEKVNPVPGNQPLVVVDYAHTPEALEW-- 392 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412 L GR V G + + S+ H ++ +W++ + Sbjct: 393 ---TLRSTRELTAGRLHIVFGTDGDR-DASKREH---LAGIAAAGADVLWVTDENPRTED 445 Query: 413 --ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461 +++D L R I + GD V++ +Y+ + Sbjct: 446 PQSIRDYLLRGIASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIITG-KGAEWYQEV 504 Query: 462 NLLLEEF 468 + + Sbjct: 505 EGIKHRY 511 >gi|229196429|ref|ZP_04323176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228587066|gb|EEK45137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 147 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 R++ + FT+I++++NA+P+SMKAAI L +++ + + V+GDM Sbjct: 1 MQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYKKKM--IVIGDML 58 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLF 436 E+G+ +++H ++ ++L+ +I +V+ G + + ++ V + + Sbjct: 59 ELGKKGETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYHAGKVQSFDNKAEIAEE 118 Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINL 463 + + DVV++K S ++ Sbjct: 119 VLKVVTKKDVVLLKGSRGMALEEIVQK 145 >gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella amazonensis SB2B] gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella amazonensis SB2B] Length = 487 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 140/478 (29%), Gaps = 49/478 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DLL V+ IDSR + F A+ G DG ++ A K Sbjct: 1 MMLLKDLL----APWFHYAGTESVHAPVIDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAK 56 Query: 64 GAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVG 118 GA +V+TD G +S + ++ +A R K ++ +TG+ G Sbjct: 57 GAAAALVHTDDPDEHGKVSYEPGLCIAFFQLNRQVSAVARQYYALTRGKLRVVGVTGTNG 116 Query: 119 KTTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164 KT+ +++ + + +G+ + + Sbjct: 117 KTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKV 176 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S G ++ V +AV T ++ HL ++ A+AK +F + + Sbjct: 177 CAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFAFGSLSARVI 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D + A G +S AD++ + G + Sbjct: 237 NLDDKVGEQWFDGMGCATG----FSCLGHAKADWRFENAHFHHAGFSANLVWPGGQKPLE 292 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L L ++ L V + A + GR + + Sbjct: 293 CRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRMECFPRKDGVSLVVDYAH 352 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H EG V G G L + + Sbjct: 353 TPDA-------IEQALKAARHHCEGALWIVFG----CGGDRDKGKRPLMAEAAEAFADCL 401 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ + +K L S GD++++ K Sbjct: 402 VLTSDNARSEDPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKG 459 >gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] Length = 511 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 149/479 (31%), Gaps = 53/479 (11%) Query: 13 AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + G P+ N +S DSR++ FF KG +D ++ A +GA + Sbjct: 22 IVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAANQGASVA 79 Query: 69 VVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 + D A + +P V D+ A+ ++ A T+I TG+ GKTT+ Sbjct: 80 MAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSV 139 Query: 124 EMLTIALSSI-----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167 ++ + H+ P + + VD + Sbjct: 140 YFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQMKYLVM 199 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225 +S + + I V I+P H+S E+ + K+EI + Sbjct: 200 EVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCRILVVNRE 259 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVV 284 + L K+H LG + I AD+Q R + L + Sbjct: 260 CSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFR 316 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N L L + + + + L+ ++ + Sbjct: 317 VMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR----MEFIKDKQGVVACVD 372 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y N S+ A+ + + +GR I V+G G ++S D+ LS Y + Sbjct: 373 -YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA---GGKAESRRKDIGRALSQYADVAI 426 Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 S + + +I V + + GD + ++ Sbjct: 427 LTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDA-LFMAAKG 484 >gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxidans DMS010] gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxydans DMS010] Length = 513 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 82/484 (16%), Positives = 165/484 (34%), Gaps = 52/484 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK---GPHYDGHDFILHA 60 + + LLQ + + + + + IS+DSR + F A+ + A Sbjct: 8 MQSLTLLLQDVVAEGV-ELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQ---KHLHQA 63 Query: 61 VQKGAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112 + KGA V+++ D A + + + V ++ +A + T+IA Sbjct: 64 LDKGAFAVLIDADKPLTQTETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIA 123 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACI-----------GSYNNHIGVPLTLARMPVDVD 161 +TG+ GKT+ + + L + K I P+++ R+ + Sbjct: 124 VTGTNGKTSVSQFIAQVLEADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFE 183 Query: 162 FGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 E L S + + V ++AV+T ++ HL + + A AK +FE Sbjct: 184 LEGCEYVVLEASSHALEQGRLNSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFEMGS 243 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + + D L+ A + ++ S AD + + ++ + G Sbjct: 244 VSRAVINACDSFGRTLMNA---LRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHG 300 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + +G N L TLG++ + A +ALS GR + Y Sbjct: 301 QQQKTTLPVLGRFNVDNALATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQPML 360 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + +A +++ L+Q +G+ V G G L ++ Sbjct: 361 VIDYAHTPDALEQALRTLRGHLNQ-----QGKLWCVFG----CGGDRDKGKRPLMGKIAE 411 Query: 399 YNISHVWLSGFHVL-----ALKDALPRSI---HVHYSE-TMDGLFLFIQSSLVDGDVVVV 449 + ++ + A+ + + H E + S D+V+V Sbjct: 412 IEADEIIITDDNPRTEDHQAIAEDILAGCQQPHAIRVELDRKVAISYAISHAAPNDIVLV 471 Query: 450 --KS 451 K Sbjct: 472 AGKG 475 >gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 147 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 14/151 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59 +L + + G+ +DSR I F + G DG H F+ Sbjct: 1 MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117 AV+ GA ++V D+ ++ IP V D A+ +A +K +I ITG+ Sbjct: 59 AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 GKTTT +L LS + G Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMDITRGLWG 144 >gi|224477766|ref|YP_002635372.1| hypothetical protein Sca_2284 [Staphylococcus carnosus subsp. carnosus TM300] gi|222422373|emb|CAL29187.1| hypothetical protein SCA_2284 [Staphylococcus carnosus subsp. carnosus TM300] Length = 675 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 94/403 (23%), Positives = 169/403 (41%), Gaps = 10/403 (2%) Query: 51 YDGHDFIL-HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 DG+ I + G L++ + + IP V + + A+ LA+ R + Sbjct: 62 NDGNSQIPKDVKEIG--LIITES--YVEGLAKKIPQIVVKNSIKAMKILALYIRKNYRNP 117 Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169 I+ ITGS+GK++T+ MLT AL+ +K S N + L + ++ + D IFE + Sbjct: 118 IVCITGSMGKSSTRLMLTAALAPLKVQENRGNS-NTRSAIYLHMCKLAANPDIAIFETSL 176 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + L + +++P IA++T I AHLS EEIA K+ IF GL + G N D Sbjct: 177 NALNNRGNMASVLKPDIAIVTGIGSAHLSTIGSTEEIAEYKSRIFAGLNEKGIAIYNADT 236 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 LK + K ++ AD + + ++ + Sbjct: 237 LHNAFLKDVALKHTSKVYGYSTENSKADLYTEEITPIRKAVKVKTNDGTHF---TVPSVS 293 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 M +N L L + L +VD + LS + + TL+D+++NA+ Sbjct: 294 NGMVENALAVLLTLKHLDINVDEKLDNLSNTQLFKKVLEFKNIHSATENATLLDDTHNAS 353 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 +M AI S EG +I LG + ++GE + + H L +L ++ Sbjct: 354 LPAMINAIQAFDSQSKFFEGHKIIALGQISDLGEQTDNVHAKLVPILEQSKADYILCMDE 413 Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + + + + + H+ + L ++ + +V++KSS Sbjct: 414 PLRKVVNKV-KGKHITWYRNAQLLLQDLRLLINQDALVLMKSS 455 >gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein [Bacillus selenitireducens MLS10] gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus selenitireducens MLS10] Length = 451 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 74/444 (16%), Positives = 159/444 (35%), Gaps = 25/444 (5%) Query: 10 LLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 L+Q++ G +P FV +G+ + +I + F +KG +DGH I AV+ GA Sbjct: 9 LIQSVSKEMSGDIPLTFVAHGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAAVENGAAAS 68 Query: 69 VVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 + ++ V + P+F V+D A+ ++A T +A+TG + T+ +L Sbjct: 69 LWRISEPVPKTLDRTFPLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGDYTRHLTRTVLA 128 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 L + Y + + ++ MP D D +F++ +R + L+ P +A Sbjct: 129 GMLKKNYRVYLPEETLGEPLPFFSSVLSMPDDTDVILFDVPSRTDDIVRSASELIIPQLA 188 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+ H +IA I G++KTGT+F++ + + G + Sbjct: 189 VLC----CHRDQHEA--DIAGHAVHIEAGMKKTGTVFVDRNRWQDVDWQTDLVEYGEDSD 242 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 F + + + + ++ + ++L LG L Sbjct: 243 SLF---------YPEQVREEDGRVLFSIKGIMFLDFSLPWLMKDHIMSVLAALGPAIHLG 293 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ + +S ++ + + S+ H Sbjct: 294 MGAESVAQGVSELTMEDFDFETCHSKDGTVVLVDHGRGLKSGLK-----YSLGMLKHMHH 348 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HV 424 RR+ ++ + + L + ++ I+ + G ++ AL + + Sbjct: 349 FDRRVLIVDEGFQSNPLKEKIIHEVFADELRDPITDLITIGEKAFWIRSALNNAGITLNG 408 Query: 425 HYSETMDGLFLFIQSSLVDGDVVV 448 + +T + L D +V+ Sbjct: 409 GHYQTHHEAMPELTELLKDEALVL 432 >gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL S4-171] Length = 440 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 73/424 (17%), Positives = 138/424 (32%), Gaps = 43/424 (10%) Query: 56 FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 F A + GA VV + ++IPV V D A+ LA ++ I Sbjct: 1 FAKKAEELGAVAVVAEKPV-----DVTIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGI 55 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------- 166 TG+ GKTT ++ + + IG+ IG + + + E Sbjct: 56 TGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLL 115 Query: 167 -------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGL 217 + +S ++ + +AV ++ HL +EE A AK+ G Sbjct: 116 RGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGN 175 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + + + + + +FG +NADF+ + S S + Sbjct: 176 SYHASNPKIAVLNADDEESVRMQTATAAHVITFGIKENADFRATNIEITSHGSTFNLTTP 235 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 ++ IG N+L + L ++ AI + +GR + + Sbjct: 236 AGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFP 295 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + + ++VL I R V+G G+ + +A++ Sbjct: 296 VIVDYSHTPDG-------LLNVLQTIDEFANNRVFVVVG---CGGDRDKGKRPQMAKIAV 345 Query: 398 LYNISHVWLSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 Y + V+ S + + +P S E + S GDV+++ Sbjct: 346 QYATNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILI 405 Query: 450 --KS 451 K Sbjct: 406 AGKG 409 >gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 523 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 138/361 (38%), Gaps = 19/361 (5%) Query: 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154 + K A R II ITGS GKT+ K +L + A SYNN +G+ T+ Sbjct: 166 MQKAAKKLRDHENLCIIGITGSYGKTSVKNVLYQLMKEDWYALATPQSYNNRMGITKTIL 225 Query: 155 R-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 + + + E+G H+ EI L VRP ++T + HL+ F +E I K ++ Sbjct: 226 EYLQPLHELFLCEMGADHVHEIEELMKFVRPQYGIVTAVGQQHLATFHSMENILHEKMQM 285 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 E L + G FLN D+ + + FGK AD++ E S Sbjct: 286 IEQLGREGIGFLNADNEWIRS----YPLRVHCRVIWFGKDMLADYRYGNVSYDEEGSRFT 341 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + + + +G H N+ + + L D K R ++ + Sbjct: 342 ITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQLPYVTHRLEKKQ-- 399 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 +TL+D++YNANP + A+ VL ++ I + + ++G + L Sbjct: 400 --MADYTLLDDAYNANPKGARYALDVLREMPQQR----IIITPGLIDLGYAQDKENELLG 453 Query: 394 EVLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVV 448 ++ + V L G +K L +H + F +Q V+ Sbjct: 454 AYMAAC-VDDVILVGPTQTEKIKKGLIAKKFPIERLHVVTNIQEAFACLQQIKEKDAYVL 512 Query: 449 V 449 + Sbjct: 513 L 513 >gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium vitis S4] gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase [Agrobacterium vitis S4] Length = 486 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 78/473 (16%), Positives = 142/473 (30%), Gaps = 42/473 (8%) Query: 5 WTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 DL + G G V + GI+ DSR + P F A++G DG F+ A Sbjct: 1 MKLRDLASGDFGDLTGPLDGPVGDVEITGITADSRKVEPGMLFVALQGVKADGAGFVADA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V +GA V+ S +++P D AL LA T++A+TG+ GKT Sbjct: 61 VARGAAAVLS-----GSHLDIAVPALVTDQPRHALALLAARVYSGQPETMVAVTGTAGKT 115 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------E 166 + + A IG+ + + Sbjct: 116 SVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQEGVTHAA 175 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + VR A T + H+ + + +AK +F+ L G+ + Sbjct: 176 MEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLPKGSPAVI 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D + + + + G++ + R +Q Sbjct: 236 FADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAIFE----V 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + + L + + A AL +G R L Y Sbjct: 292 DLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAYVDY 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 P +++ ++ + P GR I V G G + ++ V + Sbjct: 352 AHKPDALEKVLTA---VRPFTSGRIIVVFG----CGGDRDKGKRPIMGEIADRLADIVIV 404 Query: 407 SGFHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + A + + + L GD ++V K Sbjct: 405 TDDNPRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKG 457 >gi|227514324|ref|ZP_03944373.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087296|gb|EEI22608.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] Length = 263 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 16/273 (5%) Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 F ++IA AK EI GL + GT + D+ L + A + +FG+ + D Sbjct: 1 FGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKLSQQTKTFGRQLDDDLY 56 Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 + V Q +G + N L + + ++ +AL Sbjct: 57 ATSVNPDVDHVSFTVN-QWPDEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQN 115 Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379 E R ++ + YN+NP ++K ++ L+ I G+R+AVLGDM Sbjct: 116 ---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATIPV--AGKRVAVLGDML 170 Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI------HVHYSETMDGL 433 E+GE S H L + + ++ V+L G + ALKDAL ++ H + + L Sbjct: 171 ELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRKAL 230 Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 +Q+SL GDVV++K+S+ +++ L + Sbjct: 231 TDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 263 >gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] Length = 428 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 77/436 (17%), Positives = 148/436 (33%), Gaps = 37/436 (8%) Query: 1 MNPLWTFHDLL-----QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55 M T LL + S + V+ + +DSR+I ++F AI G DG Sbjct: 1 MLTSLTLAKLLKPWISEMAGSVSYLSLDDIVVSNLELDSRAIQQGDSFVAIIGHTVDGRL 60 Query: 56 FILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATII 111 FI AVQ GA V+ D G + +P+ + + L+ +A + + +I Sbjct: 61 FIERAVQAGATSVLAQADSEHKHGEVTYIGEVPIIHLYQLDTLLSVIAARLY-QYQQQVI 119 Query: 112 AITGSVGKTTTKEMLTIAL-----------SSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 +TG+ GKTT +++ + ++ + N G + + R+ + Sbjct: 120 GVTGTNGKTTITQLIAQWIGLLGDKAAIMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKL 179 Query: 161 DFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D + +S G ++ V + + T ++ HL +E +AK +F G Sbjct: 180 DQQGAHYTAMEVSSHGLVQGRVAAVPFKLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGH 239 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + D L +S A+ + + K +E Sbjct: 240 HCEHAVLNIDDVVGRRWLSERSDAIAVSVEGR--QEGERGLWATTVKYSDSGISLEFDGY 297 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + IG A N+++ + L D++ + P GR + ++ Sbjct: 298 FGQGNLQAPLIGQFNASNLMLAFASLLALGFDIEHLQQTAPKLQPVLGRMELFQTTSKPK 357 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + +A L + H EG+ ++G G + ++ Sbjct: 358 IVVDYAHTPDA-------LEKALLALRVHCEGKLWVIVG----CGGDRDKGKRPMMAAIA 406 Query: 398 LYNISHVWLSGFHVLA 413 HV LS + + Sbjct: 407 ERLADHVILSDDNPRS 422 >gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas perforans 91-118] gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas perforans 91-118] Length = 491 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 70/455 (15%), Positives = 137/455 (30%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR++ P +AF AI G G F+ A GA V+ + Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPDGLPVPA 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139 V + L +A R ++ +TG+ GKT+T ++L AL+ + Sbjct: 74 DAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133 Query: 140 -----------IGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187 + + +P + + + +S + V +A Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + + +AKA++F + D L A AL + Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALRAIGV 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S +AD ++ + + + L + H + ++ Sbjct: 254 SS---RAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAVAGALWA 310 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A A + + G+ R G ++ + + A LS + H Sbjct: 311 MEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA----LEQALSSLRSHA 366 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 + R I V G G + ++ ++ + + Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGF 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R D+V++ K Sbjct: 423 ARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457 >gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] Length = 496 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 150/479 (31%), Gaps = 56/479 (11%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVF 86 + DSR ++ + F A+ G +G D++ +KG VV + + S + + Sbjct: 27 VKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVVPTYVAKGLIASNSTDLNII 86 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143 G DDV L+ + + +I +TG+ GK++ + ++ + A IG++ Sbjct: 87 GSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFGVG 146 Query: 144 ------NNHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 + P L + D + SH + + + AV T Sbjct: 147 KLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGI-EIDTAVFTN 205 Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 + HL +E A L+ + + S +G Sbjct: 206 LTQDHLDYHGTMESYA-TAKRKLFRLDTLKHAVFCSKSDYCNFMAEDSKGDKSY----YG 260 Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311 + + DF +R S + + V +G N + L + L D Sbjct: 261 ERPSDDFVIRDVTYHSLGCSFLLLTKSGHYSVELPLMGEFNVDNAVAALASLWPLFDDKV 320 Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371 I +L+ GR +R + ++ + + A L ++ H +G Sbjct: 321 ALISSLTSLKGAPGRMERVTLSEGANVPVVLVDYAHTPDA----LSVALKALAVHSKGPI 376 Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP-----R 420 V G G +L V L+ + + ++DAL Sbjct: 377 TCVFG----CGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSEIPSEIMQDALSGVAECE 432 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS-----------SNSCGFYRLINLLLE 466 V E F ++ ++V+V K S+ +N L + Sbjct: 433 RQRVILDEDRRSAIEFAIATASINEIVLVAGKGHETYQEIGGVKSHFDDREEALNALKK 491 >gi|289677696|ref|ZP_06498586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 302 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 131/302 (43%), Gaps = 11/302 (3%) Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + ELG S +GEI + L +PH+A+IT AH+ F G + I AK EI EGL+ GT Sbjct: 4 AVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGT 63 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 LN +D F + + ++ + T + + + + + Sbjct: 64 AVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELS-RDARGCPAFTLNSPLGTAR 122 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V + +G H N L + ++ + L+ P +GR + +I Sbjct: 123 VQLNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNSVQPVKGRAVAQIASNGT---RVI 179 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D++YNANPAS+ AA+ +L+ + GR + VLGD+ E+G+ ++ H ++ + +S Sbjct: 180 DDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVS 234 Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 ++ G + A H ++ + L + + +++K S S ++ Sbjct: 235 ALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVA 292 Query: 463 LL 464 L Sbjct: 293 AL 294 >gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] Length = 503 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 73/477 (15%), Positives = 140/477 (29%), Gaps = 40/477 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL ++ + + I+ DSR + P F + G DG F A+ GA Sbjct: 5 LHALLHSVGLPVPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGAS 64 Query: 67 LVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAI------TGSVG 118 V++ + S V V D + +LA A I I + Sbjct: 65 AVLIGSAAAATLPPEQSDAVLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNGKTTT 124 Query: 119 KTTTKEMLTIALSSIKKT----YACIGSYNNHIGVPLTLARMP------VDVDFGIFELG 168 + + + G R+ + + Sbjct: 125 THLIEHLSSACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQLTAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225 +S + R AV T + HL + AKA +F ++ + Sbjct: 185 VSSHALDQHRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVV 244 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + + L + ++ S G S +A+ + S + Sbjct: 245 NIDDPWGKHLAERLGDRCWRSSLSEG-SAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQS 303 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L +G++ ++ ++A+S F GR +R G + Sbjct: 304 PLLGRFNVMNLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVD 363 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y P + +A++ P +G+ I V G G ++ V Sbjct: 364 YAHTPDGLSSALNAC---RPFADGKLICVFG----CGGDRDRGKRSQMAAIAAELADAVV 416 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + +P + D+V++ K Sbjct: 417 VTSDNPRTEDPQQILNDVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKG 473 >gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] Length = 358 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 73/220 (33%), Gaps = 22/220 (10%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 V+ +S DSR + AFFA+ G H DG FI AV KGA V+ + A Sbjct: 37 ADVTVHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKGAVTVIHEKPLPAYQAH-- 94 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 I V DV A+ A A I +TG+ GKT+T + + L K Sbjct: 95 ICYVQVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEGKTSTVDFIWQLLRLAGKKAGFS 154 Query: 141 GSYNNHIGVPLTLARMPV------------------DVDFGIFELGMSHLGEIRFLTHLV 182 + + +G ++ + E L V Sbjct: 155 STVSFSLGDEPVANPAHQTTPESITVQERLARMRDNGCEYAVVEASSHGLSPRTARLLHV 214 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 R + + HL E+ KA +F L+ Sbjct: 215 RFDAGIFMNVTQEHLEFHGTFEQYRYDKANLFRALDTHAH 254 >gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris FB024-16] gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris FB024-16] Length = 516 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 138/474 (29%), Gaps = 39/474 (8%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 + A+ G G P G V G ID+R + E F A+ G H G F A+ +GA V+ Sbjct: 25 IADAVGGTRHG--PVGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVL 82 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 + + + + +PV V DV A + A A + +TG+ GKTTT +L Sbjct: 83 TDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTTTTYLLR 142 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSH 171 L + K A +G+ IG + + ++ + E+ Sbjct: 143 HLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHA 202 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 LG R +R +A + HL +E+ KA +F ++ + DD + Sbjct: 203 LGLGRVD--PLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFT-ERRSDRQVIIVDDDW 259 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L + +G + + + + Sbjct: 260 GRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPG 319 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + L IV ++T + R Sbjct: 320 RFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPRVIVDFA 379 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + A S+L + P GR V G + + ++ +L+ Sbjct: 380 HNPGALKSLLETLRPSTAGRLRLVFGGTGQ----RDLEKRPILGRIAGELADFTYLTDDD 435 Query: 411 --------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454 + A A Y E D VV+ Sbjct: 436 PHEEDPDKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTVVIAG-RG 488 >gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 83/483 (17%), Positives = 148/483 (30%), Gaps = 52/483 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL+ H++ P V G++ID+ + P F A+ G G + AV Sbjct: 1 MKLSDLIAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60 Query: 63 KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +GA V+V+ ++ + V V DV A +A +IAITG+ GK Sbjct: 61 RGAVAVLVDQQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKK----------------TYACIGSYNNHIGVPLTLARMPVDVDFG 163 T+ M L ++ S + P + D Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 L + +G + + V T + HL + +E AK +F+G Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD ++ ++ +AD++ + S + G+ Sbjct: 239 CAVVNADDPVGAGIRKLMPGAVT----TYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G N L T+ +L + + AL GR +R + + Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQISGGTSVIVD 354 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 S + VL+ I GR I V G G + ++ + Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRADMGAIAGTHS 403 Query: 402 SHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 L+ + + D + + I + D+V++ Sbjct: 404 DLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAG 463 Query: 450 KSS 452 K S Sbjct: 464 KGS 466 >gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 525 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 79/490 (16%), Positives = 145/490 (29%), Gaps = 50/490 (10%) Query: 4 LWT-FHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 L+T L A+ V ++ DSR P + F A G G F Sbjct: 10 LFTQLDALAAAVGATVDVGDGGPEARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFA 69 Query: 58 LHAVQKGAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATII 111 AV+ GA V+ + +G S+PV VDD A+ K A Sbjct: 70 ASAVEAGANAVLTDAQGRDILRRDLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDSY 129 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH---IGVPLTLARMPVDVDFGIFE-- 166 A+TG+ GKTTT M+ L ++ + IG+ + VP L D Sbjct: 130 AVTGTNGKTTTAYMVESILGALGRKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFH 189 Query: 167 ---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + S ++ + VR +A T + HL +E AKA +F Sbjct: 190 RRGGGTDVVMETSSHALVQGRSDPVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPE 249 Query: 218 EKTGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + LL + G D + E S + Sbjct: 250 RARNAVVSVDGEYGRRLLAECAPRLEGEVAALAVDSGLPDLPDGVVGWKALAMEGSSFVL 309 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + + ++ + + A ++ L Sbjct: 310 ESTDGRRLATSTSLPGDFNVANAALAAVMVMTAGYSPDEL-ARALPAGINPAVPGRMEVL 368 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 N ++D ++N ++ + + P EGR + + G G+ + + Sbjct: 369 NARPRVIVDFAHNTEA-----LVNAMKALRPSTEGRLVVLTGSA---GDRDKGKRPAMGA 420 Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDG 444 ++ Y V+++ ++ A+ V + + Sbjct: 421 AVARYG-DFVYITDDDPHNEDPAVIRAAVIEGTRGFDTPVVEIADRSQAIDAAIAEASER 479 Query: 445 DVVVVKSSNS 454 D +++ Sbjct: 480 DTILLAG-RG 488 >gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sonnei Ss046] gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046] Length = 497 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 71/480 (14%), Positives = 143/480 (29%), Gaps = 49/480 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 5 NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 66 GLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 ++ +PV + + L+ LA ++ +TG+ Sbjct: 61 AAIIAEAKAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTN 120 Query: 118 GKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------- 166 GKTTT ++L + + + N +G + E Sbjct: 121 GKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGAT 180 Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 181 FCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAI 240 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSME 282 D+ L A+ + + + + + + + E Sbjct: 241 INADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 300 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + H +G N+L+ L + L + +K + P GR + + Sbjct: 301 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDY 360 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + +A L H G+ V G G L ++ Sbjct: 361 AHTPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFAD 409 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + H E + DVV+V K Sbjct: 410 VAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 469 >gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] Length = 533 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 148/479 (30%), Gaps = 52/479 (10%) Query: 9 DLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ P G + GI++ ++ + P + F A+ G G + A+++GA Sbjct: 3 EVAALTGARLERPAPTGERLTGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAA 62 Query: 68 VVVNTDMVASIGSLS---IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 V+ + + + + V+ L +A ++ +TG+ GKTTT Sbjct: 63 VLTDRAGAELLAGTDLGSVALLVVERPREHLGAIARQLYGDPSRRLAVVGVTGTSGKTTT 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFELGM- 169 +L AL++ A IG+ I P A + V V+ G+ + M Sbjct: 123 CYLLEAALAADGSRSAVIGTVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAME 182 Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S R + T ++ HL +E+ AKA +F+G G ++ D Sbjct: 183 VSSHALSLGRVSGTRFAVGAFTNLSQDHLDFHHDMEDYFRAKAMLFDGRA--GAHVIDVD 240 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + L A+ + AD+ + + V +V Sbjct: 241 TEYGARLAAEHPEALTV----SDRPGAADWSVEMVTLAANGVQHVVLSGPGKRQVTLDLA 296 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + + + D A ++ G+ R Q F ++D ++ Sbjct: 297 IPGAFNVGNAAVALACVDALGRDVQQAADALAT-VVVPGRMERVDAGQDFLAVVDYAHKP 355 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + VL I G I VLG G + + S + ++ Sbjct: 356 GAVAA-----VLDAIGQGLAGPLIVVLGA----GGDRDTGKRPMMGAESAARADVLIVTD 406 Query: 409 FH----------VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L A P R V G VV+ K Sbjct: 407 DNPRSERPADIRAQVLAGAAPVADRRPCQVLEIGDRRAAIRRAVQLAGTGGAVVIAGKG 465 >gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Boryong] gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Boryong] Length = 489 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 74/458 (16%), Positives = 154/458 (33%), Gaps = 49/458 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + I+I ++S P + FFA+ G G+DFI A+ GA L++ + + S + V Sbjct: 15 IRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQAHITSYSN----VI 70 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 V ++ + + + ++A+TG+ GKT+ + A IG+ Sbjct: 71 VVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAASIGTLGVI 130 Query: 147 IGVPLTLARMPVDVDFGIFELGMSH------------------------LGEIRFLTHLV 182 R+ + MS+ G + + Sbjct: 131 TTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFVALEASSHGLDQNRLMDI 190 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + A T+ + HL + + AK E + G +N + + ++++K Sbjct: 191 KFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELSIIQSKITD 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + S + D Q+ + + + + + IG N+L+ L Sbjct: 251 EFGLKLLSV--EQQGDIQIINVQSSLNGQKVHFRYKNSDYKFEVLVIGRVHITNILIALL 308 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D I LS P +GR + +D + N + + Sbjct: 309 LAVNAGFDSAKLIPLLSNLKPIKGR---MEKIQFGNCYAFVDYALTPNALATM----LTE 361 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL-K 415 + + +GR I + G + + + + V S + V ++ A+ K Sbjct: 362 LRTLNSKGRLITIFGGSEN--RDAIARRMQMGIVASKLS-DLVIVTDQDSGNEDPAAIRK 418 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + S +VD D++++ K Sbjct: 419 EILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKG 456 >gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Butyrivibrio proteoclasticus B316] gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Butyrivibrio proteoclasticus B316] Length = 495 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 86/484 (17%), Positives = 147/484 (30%), Gaps = 50/484 (10%) Query: 1 MNPLWTFHDL-LQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 M +L G+S I + + + D+R I+ F IKG ++DGH Sbjct: 1 MILSKLLEELKCTVTAGNSAEILDADKVEIKDVVNDNRKISEGSLFICIKGANFDGHSCA 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 + A K A +VV D V G I V V++ A+ ++ A K I ITG Sbjct: 61 MEAANKKAAAIVVEHD-VELPGDCKIAVIRVENTRYAMAFISAAYFDHPARKLKTIGITG 119 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------- 166 + GKTTT ++ L + IG+ IG A F + E Sbjct: 120 TKGKTTTTYLIRNMLENAGHKVGLIGTIEVIIGEEHIHAENTTPESFALQEYMARMVEAG 179 Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + +S G + T I + T I P H+ + Sbjct: 180 CDSVVMEVSSQGLMLHRTQGFIFDIGIFTNIEPDHIGP-----NEHKDFEDYMHCKGLLF 234 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQG 278 + ++ Y++G + D + ++ E Sbjct: 235 KQCRIGICNGDDIHTDDILEGHTCKAYTYGFGEGLDLRAINLAYIRKPGELGVFFDTEGL 294 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 +M G N L + + L + AL R Sbjct: 295 INMHAEIRTPGKFSVYNALCAIAVAQELGCTPEEIAPALKDAK----VKGRIEMVKVSDE 350 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FTL+ + + A S+L+ + + R I+V G G S+ ++ EV Sbjct: 351 FTLMIDYAHNA----MALKSLLTTLRDYHPNRLISVFG---CGGNRSKLRRFEMGEVSGK 403 Query: 399 YNISHVWLSG----FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 Y+ + S + + + + GD++V+ Sbjct: 404 YSDFTIITSDNPRYEEPEDIMNDIETGMKKTDGKYIKITDRKEAIRYAIDHGEQGDIIVL 463 Query: 450 --KS 451 K Sbjct: 464 AGKG 467 >gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii SH046] gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii SH046] Length = 498 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 151/471 (32%), Gaps = 56/471 (11%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVN 71 + G +DSR + + F A+ + F A+ KGA VV Sbjct: 11 ANLSAEWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKT--EQFAQIALDKGALAVVSE 68 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLT 127 T++ + V +V + L A I+A+TG+ GKTT ++ Sbjct: 69 TELALANS------IVVPNVRHLMGGWQKQFLLATSQVQPARILAVTGTNGKTTISRLVA 122 Query: 128 IALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFGIFE---LGMSHL 172 L ++ + + +P L E + S Sbjct: 123 ELLM-LQGKSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEASSH 181 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + IA + ++ HL +E A AK+ +F+ + D+ Sbjct: 182 GLEQGRLAGSEIEIAAYSNLSRDHLDYHGTLEVYAEAKSRLFQFPSLKVAVINLDDEHAG 241 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 +++A + I ++ ++ AD+ ++ + + + +V + +G+ Sbjct: 242 VMIQAAQNNPAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQAEYQVQNPLLGHFN 301 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 +N++ +L +V D+ + + GR + + + + A Sbjct: 302 IENLVASLIMVEQAGFDLADVVATTAQLKGAPGRM----QVIRDDARLFVVDYAHTPDA- 356 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + VLS + H E + AV G G L +L V L+ + Sbjct: 357 ---LVQVLSTLKRHVEQQLWAVFG----CGGDRDRGKRPLMTQAALNGADVVLLTSDNPR 409 Query: 413 ---------ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + S V + F GD+VV+ K Sbjct: 410 TENPEQIFADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKG 460 >gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sp. M21] gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21] Length = 505 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 67/428 (15%), Positives = 129/428 (30%), Gaps = 37/428 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL ++ + + + DSR +AP FFA++G DG +F+ AV+ G Sbjct: 1 MKLAQLLNCLEAPEVAGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + + V V D A++ +A A ++ ITG+ GKTTT Sbjct: 61 AVAIVADRPCACP----GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTT 116 Query: 123 KE-----MLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----------MPVDVDFGIFE 166 M + S I P T + + + E Sbjct: 117 TYLVEGIMEQAGVPSAVLGTISYRFAATEIPAPNTTPESVDLQRILRELVDLGARGAVME 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224 + S + +A+ T + HL +E +K +F Sbjct: 177 V--SSHSLEQRRVDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPL 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + + ++ + AD + + + + + + +V Sbjct: 235 RRAVVNLDDPFGPRIAEKASAPVLTYSMTGKADISVAEAEFTVDGIRCRLDTPVGEISLV 294 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L +G L + + GR +R Sbjct: 295 SELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVESEEGITVLVDYAH 354 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A +VLS +S R I + G G + ++ Sbjct: 355 T-------GDALENVLSTVSELKTDRIITIFG----CGGDRDKGKRPVMGEIAARYSDLA 403 Query: 405 WLSGFHVL 412 ++ + Sbjct: 404 VITSDNPR 411 >gi|313895810|ref|ZP_07829364.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975235|gb|EFR40696.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 141 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + G +T I+++YNA+PASM+AA+ +++ P GRRIAVLGDM E+G S Sbjct: 1 MRYEVHHIGAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGAASAEG 57 Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 H + + + V G + +A ++ T + ++ L DGD V Sbjct: 58 HRSVGRTAAAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLADGDTV 117 Query: 448 VVKSSNSCGFYRLINL 463 + K S ++ L Sbjct: 118 LFKGSRGMRMEHIMEL 133 >gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia pickettii 12D] gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D] Length = 514 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 135/461 (29%), Gaps = 49/461 (10%) Query: 30 ISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 ++ D+R + + F A G DG I A++ GA V+ + + Sbjct: 33 LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRI 92 Query: 86 FGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 VD + LA +I +TG+ GKT+ + + AL+ + A +G+ Sbjct: 93 LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152 Query: 143 YNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHI 186 G LA I + +S G + I Sbjct: 153 LGT--GFVDGLAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTCFDI 210 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL + E AKA +F + D + LL+ + Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIETIE 270 Query: 247 IYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + + +V V +G N+L LG Sbjct: 271 YGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLG 330 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + AI L P GR +R+ Y P +++ + L+ Sbjct: 331 ALLAAGVPWPDAIAHLEKLQPVSGRMERFGGEDGPLVVVD----YAHTPDALEQTLRALA 386 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 I+ G AV G G ++ HV L+ + Sbjct: 387 PITEARGGNLWAVFG----CGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILD 442 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + D + E L DV+VV K Sbjct: 443 EIADGMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKG 483 >gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 481 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 81/505 (16%), Positives = 156/505 (30%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ QGH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDDLFREIIDQGHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAISQGLAWYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154 +A TG+ GKTT+ LS T G + Sbjct: 114 LAFTGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + + E+ S + + + + V I P H+ E+ K Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + + + +N D F +LK + S ++ + + + + + Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEHQEHDFYGSQSSNQIDNSKAFSFSATGKLAGD 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + G+ Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLENIKKGIAATRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G ID ++N + ++S + H G+ VLG GE + D Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ + + S V + + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y+++ E++P Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471 >gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 511 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 149/479 (31%), Gaps = 53/479 (11%) Query: 13 AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + G P+ N +S DSR++ FF KG +D ++ A +GA + Sbjct: 22 IVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAANQGASVA 79 Query: 69 VVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 + D A + +P V D+ A+ ++ A T+I TG+ GKTT+ Sbjct: 80 MAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTKGKTTSV 139 Query: 124 EMLTIALSSI-----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167 ++ + H+ P + + VD + Sbjct: 140 YFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQMKYLVM 199 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225 +S + + I V I+P H+S E+ + K+EI + Sbjct: 200 EVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCRILVVNRE 259 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVV 284 + L K+H LG + I AD+Q R + L + Sbjct: 260 CSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFR 316 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N L L + + + + L+ ++ + Sbjct: 317 VMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR----MEFIKDKQGVVACVD 372 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y N S+ A+ + + +GR I V+G G ++S D+ LS Y + Sbjct: 373 -YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA---GGKAESRRKDIGRALSQYADVAI 426 Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 S + + +I V + + GD + ++ Sbjct: 427 LTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDA-LFMAAKG 484 >gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 511 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 149/479 (31%), Gaps = 53/479 (11%) Query: 13 AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 + G P+ N +S DSR++ FF KG +D ++ A +GA + Sbjct: 22 IVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAANQGASVA 79 Query: 69 VVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 + D A + +P V D+ A+ ++ A T+I TG+ GKTT+ Sbjct: 80 MAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSV 139 Query: 124 EMLTIALSSI-----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167 ++ + H+ P + + VD + Sbjct: 140 YFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQMKYLVM 199 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225 +S + + I V I+P H+S E+ + K+EI + Sbjct: 200 EVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCRILVVNRE 259 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVV 284 + L K+H LG + I AD+Q R + L + Sbjct: 260 CSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFR 316 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N L L + + + + L+ ++ + Sbjct: 317 VMMPGDFNVANALAALTVTAQVAPVSEDFRAGLAETTVPGR----MEFIKDKQGVVACVD 372 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y N S+ A+ + + +GR I V+G G ++S D+ LS Y + Sbjct: 373 -YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA---GGKAESRRKDIGRALSQYADVAI 426 Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 S + + +I V + + GD + ++ Sbjct: 427 LTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDA-LFMAAKG 484 >gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] Length = 481 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 81/505 (16%), Positives = 154/505 (30%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH F + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAISQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154 +A TG+ GKTT LS T G + Sbjct: 114 LAFTGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + + E+ S + + + + V I P H+ E+ K Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + + + +N D F +LK + S ++ + + + + + Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + G+ Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G ID ++N + ++S + H G+ VLG GE + D Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ + + S V + + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y+++ E++P Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471 >gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 511 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 79/458 (17%), Positives = 144/458 (31%), Gaps = 58/458 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + + I+ + + F AIKG DGH FI A + GA + VV Sbjct: 20 DKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFIKKARELGAEIAVVE-----DYSEE 74 Query: 82 SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +I V++ AL +A +I IT + GKTTT M+ L K+ Sbjct: 75 NIKQIRVENSRIALADMARNFYEDPSKDMNVIGITATNGKTTTAFMVNSILEEDKRNTGI 134 Query: 140 IG---SYNNHIGVP-----------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 IG + + +P + R D + +S + + + Sbjct: 135 IGTVLTRYADVMIPSVLTTPESLTLQSYFRDMKDKGVTDVTMEVSSSAQELYRNKNIDFD 194 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL--- 242 I + H+ E K+ + ++ LN DD L+ K+ A Sbjct: 195 IVTFNNLGREHIDQHGSFENYFRFKSRLIRHAKEDALAILNADDEKIYSLRDKTKAQVLS 254 Query: 243 -----GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 ++ +K + + L+ + +GY N L Sbjct: 255 FSLESNDAEFGIQDLDLSSGKGKFTFKINRDIKIKDFILEKSEFNIELGSVGYSSVMNSL 314 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + I L D +T +AL F E R L I + + AN ++ A + Sbjct: 315 VAIIIGLCLKIDTETIKRALKNFKGVER-----RFELIFDEEFKILDDHFANEKNIDATM 369 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-------------YNISHV 404 L ++ A+ G+ + ++ E L + V Sbjct: 370 ETLKEMDYKNLNILYAI------RGKRGVEVNREITERLVKWIKVLNPKSLTATLSRDTV 423 Query: 405 ----WLSGFHVLALKDALPRSI-HVHYSETMDGLFLFI 437 ++ + KD L ++ +T++ Sbjct: 424 KEKDRVTDEELKVFKDILEKNKIDCKVYDTLEESINDA 461 >gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] Length = 544 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 76/493 (15%), Positives = 152/493 (30%), Gaps = 62/493 (12%) Query: 7 FHDL----LQAIQGHSIGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHA 60 +L L+ + G + V G+ D R+ I + F A+ G G F + A Sbjct: 29 LSELSGARLEWV-GQPGSQSSEVVVKGV--DLRAQGIVADDLFAALPGARTHGAQFAVDA 85 Query: 61 VQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112 + +GA ++ + + S+PV + L +++ R K ++ Sbjct: 86 LGRGATAILTDEAGLELIEAAGKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVG 145 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARM 156 ITG+ GKTTT +L A++ + +G+ I L Sbjct: 146 ITGTSGKTTTSYLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMA 205 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIF 214 +D + E+ SH + + + R I T ++ HL EE A A+ Sbjct: 206 EQGIDTVVMEV-SSHALALGRVDGI-RFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDP 263 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E + + DD + + + + + S + +E Sbjct: 264 ESTVRAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTF 323 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +L G + + N+ +++ A A+ + G+ R Sbjct: 324 ELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVDVPGRVQRIDR 383 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 Q F ++D ++ V++ + GR V+G G + L Sbjct: 384 GQSFLAVVDYAHKPAALEA-----VIATLRNQVPGRVAVVVGA----GGDRDAGKRTLMG 434 Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSS 440 + ++ ++ ++ + + Sbjct: 435 EAGARGADLLIVTDDNPRTEDPAKIRASVMQGAIDVPESERGEIREVGDRALAIEQAVRW 494 Query: 441 LVDGDVVVV--KS 451 GDVV+V K Sbjct: 495 AQPGDVVLVAGKG 507 >gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium tumefaciens str. C58] gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Agrobacterium tumefaciens str. C58] Length = 489 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 71/456 (15%), Positives = 131/456 (28%), Gaps = 38/456 (8%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + + + GI+ DSR AP F A+ G DG ++ A + Sbjct: 18 LLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKD-----AVAKGAVAVVSGH 72 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +PV V D L+ A + T++A+TG+ GKT+ + + Sbjct: 73 AVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVASFVRQIWAFAGHAA 132 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 A IG+ + + + S G + V Sbjct: 133 AQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVH 192 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A T + H+ IE+ +AK +F+ L + G + + D + + Sbjct: 193 LSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAAREA 252 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G++ R +Q + + L Sbjct: 253 GLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDI----PLAGDFQVANALVAA 308 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + + A AL G R L Y P ++ +VL+ + Sbjct: 309 GLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDAL---ENVLTSV 365 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK-DA 417 P GR I V G G + ++ V ++ ++ + Sbjct: 366 RPFTSGRIITVFG----CGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEV 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + S L GD ++V K Sbjct: 422 MAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKG 457 >gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] Length = 523 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 151/360 (41%), Gaps = 20/360 (5%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 A R + +I+ ITGS GKT+ K +L LS + T GSYNN +G+ LT+ Sbjct: 168 ADAAKLLRSNNALSIVGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMGITLTIRN 227 Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + + + E+G H+ EI L V+P V+T++ HL+ F +E I K ++ Sbjct: 228 KLERLHEVFLCEMGADHVKEIHDLMQFVKPQYGVVTSVGAQHLATFGSMENILHEKMQMI 287 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E L G F+N D+++ I FG S++AD++ + E + V Sbjct: 288 ECLPADGIGFVNRDNAYIRT----YSIQNTCRIVWFGMSEDADYRCCDIRYSEEGTSFTV 343 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 +G+S +G H N+ + + L + A+ E +R + Sbjct: 344 IQEGQSHRFHTKLLGKHNVVNITCAIAVAHTLGVSWEIMALAVEKLPYVE-----HRLQV 398 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + F TL+D++YN+NP + A+ VL Q+ + E+GE + L E Sbjct: 399 RKSFCTLLDDAYNSNPEGARCALEVLKQMKHQR----FIITPGFLELGEQQEEEQYKLGE 454 Query: 395 VLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ + L G ++ L S VH ++ +Q D V++ Sbjct: 455 EIADS-VDTAVLVGAVQTKSIAAGLTDSGFPKERVHVCDSFQEALAIVQKQAQLQDCVLL 513 >gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus coahuilensis m4-4] Length = 443 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 68/429 (15%), Positives = 144/429 (33%), Gaps = 35/429 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-PHY--DGHDFILHAV 61 LL+ + +++ P ++ I +DSR + Q + + G + D HD+I A+ Sbjct: 1 MKLSHLLKDLTQYTLTGNPTIEISQIEMDSRRVKNQCMYICVPGIEGFLADRHDYIDQAI 60 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG---- 115 + GA ++V ++ I V V+DV A +K+A + + II +TG Sbjct: 61 ENGAHAILVEKEVDV---PSHITVVRVEDVRLAFSKIATVFHNEAYKQLKIIGLTGTNGK 117 Query: 116 -----------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFG 163 + T M + Y + + A+M D+++ Sbjct: 118 TTTTFLVEKLLNDAGLKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNFAKMVEEDMEYC 177 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ S G V + ++T + HL ++ +K+++F LE+ Sbjct: 178 VMEV--SSQGIDMGRMKGVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLFTHLEEFEGE 235 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + + A S+G +++ Q + +V + E Sbjct: 236 KPLAILNKDDDSYAYFKNASRGETISYGIDQDSIVQASELHFNKNGIHFKVTNKRSLEEQ 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 H N+ L +++ T ++ R T+I Sbjct: 296 EIHL-PLVGKFNVYNALAAITVAYTVGVTLEESKRSLENLSQIPGRMESFTTANGVTVIV 354 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + A +VL + +G+ I V+G G + ++ + Sbjct: 355 DYAHTPDA----LENVLQSLKSSLDGKLITVVG----CGGNRDENKRPIMGKIAAECSDY 406 Query: 404 VWLSGFHVL 412 V+ + + Sbjct: 407 VYFTSDNPR 415 >gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 491 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 70/455 (15%), Positives = 136/455 (29%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR++ P +AF AI G G F+ A GA V+ + Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPDGLPVPA 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139 V + L +A R ++ +TG+ GKT+T ++L AL+ + Sbjct: 74 DAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133 Query: 140 -----------IGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187 + + +P + + + +S + V +A Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + + +AKA++F + D L A AL + Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALRAIGV 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S +AD + + + + L + H + ++ Sbjct: 254 SS---RAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAVAGALWA 310 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + A A + + G+ R G ++ + + A LS + H Sbjct: 311 MEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA----LEQALSSLRSHA 366 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 + R I V G G + ++ ++ + + Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGF 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R D+V++ K Sbjct: 423 ARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457 >gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas vesicatoria ATCC 35937] Length = 491 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 74/455 (16%), Positives = 141/455 (30%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR++ P +AF AI G G F+ A GA V+ A + + Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFEPPAPAEL-PVPA 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK------- 134 V + L +A ++ +TG+ GKT+T ++L AL+ + Sbjct: 74 DAIAVPGLRARLGSMADQFHGHPSRALRMVGVTGTNGKTSTVQLLAQALTLLGTSTGTLG 133 Query: 135 ------KTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187 A + + + + + + +S + V +A Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQGRVDAVHFDVA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + + +AKA++F + D L + AL + Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQAAVVNLDDAFGRTLFASLDPALRAIGV 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S G+ A + + +++ V +G N+L G + L Sbjct: 254 SSRGQ-GGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNLLAVAGALHALD 312 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P GR R G ++ + + A L+ + H Sbjct: 313 HAPAQIAQVLGQLQPIHGR--MNRLGGAHGAPLVVVDYAHTPDA----LEQALASLRSHA 366 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 + R I V G G + ++ N ++ + + Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRGF 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R + D+V++ K Sbjct: 423 ARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 457 >gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas atlantica T6c] gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas atlantica T6c] Length = 530 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 72/470 (15%), Positives = 136/470 (28%), Gaps = 49/470 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + + +DSR +A AF A+KG DG DFI A+ GA +++ + A G Sbjct: 41 AGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAEHGHT 100 Query: 82 SIP----VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL----S 131 S+ + D+ L+ LA A +I +TG+ GKT+T ++ + Sbjct: 101 SMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIGVTGTNGKTSTVQLTSQLAALLNK 160 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEI 175 + G + I L +S + Sbjct: 161 RAASIGTLGSGVIDQSGACASHNETANTTPDAISMHKLMAQFAQDQVKQVALEVSSHALV 220 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + ++ +AV+T + HL ++ A AK E+ + E + + L Sbjct: 221 QQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRELLKQPELRFAVLNGNEIESKHWL 280 Query: 236 KAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 A+ +S A+ Q +L E Sbjct: 281 AQLPSAVTPVIYGIADESLMLTDAEHQCLAKDVVYSNQGCRFKLVSSWGECDIQLSLLGR 340 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 I S L A G+ R + ++D ++ + Sbjct: 341 FNIFNALAAIASQLCLGESLNDIAKHAHLLVPVTGRMERFGGDNSPTVVVDYAHTPDA-- 398 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 L + H +GR + G G + L ++ + ++ + Sbjct: 399 ---LKQALVALRQHSQGRLSVIFG----CGGDRDTGKRSLMGEVAETYADDMTITNDNSR 451 Query: 413 -----ALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ + V + D+++V K Sbjct: 452 SEDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDIILVAGKG 501 >gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Eubacterium eligens ATCC 27750] gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Eubacterium eligens ATCC 27750] Length = 497 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 139/484 (28%), Gaps = 54/484 (11%) Query: 5 WTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56 ++L+ + V GI+ DSR + AF IKG DGH + Sbjct: 1 MKLSEILKICSENETADFRYSVVCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKY 60 Query: 57 ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA---- 112 I ++ A ++VV D V D+ AL ++ A + Sbjct: 61 IDQ-IKDKASVIVV-LDGEYEAKDCKAAVVSTDNTRLALALMSAAVYGNPDRKLFTIGIT 118 Query: 113 --------------ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158 + + G T + + A + + + Sbjct: 119 GTKGKTTTTYMVKNVLEACGIKTGLIGTIETIIGDEAIPAHNTTPESIEIHQSFAKMVDA 178 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 + E+ S G T + I V T + P H+ + + Sbjct: 179 GCKAVVMEV--SSQGLKLDRTAGIMFDIGVFTNLEPDHIGP-----NEHESFEDYLNCKA 231 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 K + + I + S+G NAD + + E + + Sbjct: 232 KLFKQCKVGIVNADDKHTQDILRGAICKVESYGIGDNADIKAENIELLHEPGKIGLTYDC 291 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + + ++ +L ++I + +G+ ++ F Sbjct: 292 TGLVNMKVELNLPGKFSVYNSLCAIAITRHFDVDEEALKETLKHVKVKGRIELVKVSDDF 351 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +ID ++NA +++ S ++ E ++ G S+ ++ EV Sbjct: 352 TLMIDYAHNA--------MALESILTTLKEYHPHRLVCLFGCGGNRSKERRYEMGEVSGK 403 Query: 399 YNISHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV 449 + S A+ + + I + + + GD++V+ Sbjct: 404 LADLTIITSDNPRFEEPEAIIEDIKTGIAKTTGKHVDITDRKEAIKYAIEHGEPGDIIVL 463 Query: 450 --KS 451 K Sbjct: 464 AGKG 467 >gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10 bacterium 'Dutch sediment'] Length = 504 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 140/480 (29%), Gaps = 48/480 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL+ + + V+ I DSR + P + F I G DGHDFI A GA Sbjct: 3 LFDLINGTEHQVLRGSVDLEVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFIQAAWAAGAV 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 +V + V V + +L +A +++ +TG+ GKTTT Sbjct: 63 AALVERTDLTEAALQGGTVVKVANTRQSLAAVACRFYGHPSRSLSMVGVTGTNGKTTTTY 122 Query: 125 MLTIALSSIKKTYACIGSYNNHI---------GVPLTL-------ARMPVDVDFGIFELG 168 ++ L IG+ P + + D + E+ Sbjct: 123 LVESVLRCAGHQVGLIGTIGYRCNELELEAARTTPESCDLQALLERMARLRADSVVMEV- 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226 SH + + +AV T + HL +E A G+ T T Sbjct: 182 SSHALALHRVDGC-EFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGLGVGSTKTTEKA 240 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + YS+ AD + K + +Q + + Sbjct: 241 AVVNLDDPAADLFLGATRVRRYSYSVEGPADLSVADVKMGPDGIRCRLQTPWGTTAIRSP 300 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G + N+L L AD+ ++ H GR +R + Sbjct: 301 LLGRYNLSNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVETGQAFSVMVDYAHTP 360 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A VL GR I + G G L +L + Sbjct: 361 DA-------LRRVLRMARQCCPGRLIVLFG----CGGERDRGKRPLMGEAALELADFTVI 409 Query: 407 S-----GFHVLALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451 + G + + + + + S GD+VV+ K Sbjct: 410 TSDNPRGEDPHQIIEEIETGAKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVIAGKG 469 >gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. DR1] gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. DR1] Length = 499 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 76/464 (16%), Positives = 144/464 (31%), Gaps = 57/464 (12%) Query: 24 QGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 Q +G S+DSR + + F A+ + F A+ GA ++ T++ + Sbjct: 19 QQPFHGFSLDSRKVQSGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGVANE 76 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135 + DV + + I+A+TG+ GKTT ++ L S ++ Sbjct: 77 ------WVCPDVRQRMGEWQERYLQHIDPVTPARIVAVTGTNGKTTISRLV-AELISSQQ 129 Query: 136 TYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTH 180 + + +P D+ L S G + + Sbjct: 130 QRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLN 189 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 IAV + ++ HL +E A AKA +F + D+ ++ A Sbjct: 190 GCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFNSLKVAVINLDDEHAALMINAAKQ 249 Query: 241 ALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 I ++ ++N D+ + + + S V +G+ +N++ Sbjct: 250 NPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGHFNVENLIAA 309 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 L + AL F PK + G + + + A I V Sbjct: 310 LIAAEQAGF----DLDALVAFVPKLIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQV 361 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412 L + H + AV G G L +L + + L+ + Sbjct: 362 LKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQI 417 Query: 413 --ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + + F+ GD+VV+ K Sbjct: 418 FADMKQGINFSGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKG 461 >gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax sp. DG881] gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax sp. DG881] Length = 490 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 155/476 (32%), Gaps = 45/476 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T LL + ++G+ +DSR++AP + F A+ G DG FI AV Sbjct: 1 MMTLQQLLPDV--TLPASAAGVVLSGLQLDSRNVAPGDLFLAVPGVASDGRQFISQAVAA 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA V+ + + ++P + ++ + LA ++ +TG+ GKT+ Sbjct: 59 GAVAVLADAETFEIQQDQAVPCVALPELGRRVGTLAARWYGEPGAAMNVVGVTGTNGKTS 118 Query: 122 TKEMLTIALSSIKKTY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 L AL+++ + + I + LAR+ + Sbjct: 119 ITWFLRDALNALGHRCALVGTLGLGLKGDEQTTGHTTPDPITLQAGLARVRDAGADCVAM 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 SH + L P +AV + ++ HL +E +AK+ +F + Sbjct: 179 EVSSHALDQHRLGSTPVP-VAVFSNLSRDHLDYHGDMEAYLAAKSVLFTRDGVKLAVINC 237 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + + L+ +FG A + ++ E+ + G + V Sbjct: 238 DDPAAYSLI---GCLADGVRCVTFGDQPGATVRCAAVTFTADGMRAELTVGGDPLTVTLP 294 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N++ GI+ + AL+ GR + + + Sbjct: 295 LFGRFNLSNVMAVAGILHGQGISTASLGGALAAVTAVPGRMEPVQQPGCPTVIVDYAHTP 354 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + L H GR ++G G + ++ V L Sbjct: 355 DG-------LEKALQACRAHFHGRLFCIVG----CGGDRDTGKRPQMAAVAERGADRVVL 403 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ L + V + + DGDV+++ K Sbjct: 404 TSDNPRSEDPQQIIDDMRAGLADAASVQAIVERAQAVMDTVQAASDGDVILLAGKG 459 >gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM 16795] gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM 16795] Length = 502 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 70/471 (14%), Positives = 147/471 (31%), Gaps = 63/471 (13%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + I+ S F A+KG DGH ++ A +GA + V+ D+ + ++ Sbjct: 23 DDIEIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSRGARVFVLQDDIEMADDAIK 82 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 V+D AL+K++ II +TG+ GKTT ++ L+ + Sbjct: 83 ---IIVEDSRIALSKISANYFGNPSKSLKIIGVTGTKGKTTITNYISEVLNRAGINTGVV 139 Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 G+ + R +D + +S G R V + Sbjct: 140 GTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVECVSMEVSSGGLQRHRVEHVDFDV 199 Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A+ T ++P H+ + KA++ T+ + + + + + Sbjct: 200 AIFTNLSPDHIGPKEHPTFQNYLECKAKL-------FTLAKHGIINIDDEHAQEIIDIAT 252 Query: 245 KTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 I +FG K AD + + + + + G N L + Sbjct: 253 CDIETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAGNYYICSPGMFSIYNALAVI 312 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L + +AL+ R + T+I + Y N S++ + L Sbjct: 313 AVCKYLGVKKEITREALTEAK----VCGRVEVLSVLPYATIIID-YAHNGVSLENILKTL 367 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVL 412 ++ +G ++ +L +V S + S + Sbjct: 368 EHYDHKR------LICLFGSVGGRTKIRRKELGDVASRECDLSILTSDNPDFEDPLEIID 421 Query: 413 ALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVV-----------VVKS 451 + + ++ + E +GD++ ++K Sbjct: 422 DIAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLIKG 472 >gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 499 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 75/462 (16%), Positives = 147/462 (31%), Gaps = 57/462 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 +G S+DSR + + F A+ + F A+ GA ++ T++ Sbjct: 21 PFHGFSLDSRKVESGQIFIALTSYSQPEKT--RIFAESALANGALAIISETELGLENE-- 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + +V + + + I+A+TG+ GKTT ++ L S ++ Sbjct: 77 ----WVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRLI-AELISSQQQQ 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLV 182 + + +P +D + L S G + + Sbjct: 132 CAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYTKQGATFASLEASSHGLEQGRLNGC 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IAV + ++ HL +E A AKA +F + D+ ++ A Sbjct: 192 AIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEYAALMINAAKQNP 251 Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++ ++N D+ + + + Q S V +G+ +N++ L Sbjct: 252 AQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGHFNVENLIAALI 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++AL F P+ + G + + + A I VL Sbjct: 312 AAEQAGF----DLEALVAFVPQLIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQVLK 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + H + AV G G L +L + + L+ + Sbjct: 364 TLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIFA 419 Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461 >gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20] Length = 528 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 139/455 (30%), Gaps = 40/455 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVF 86 G+S+DS A E F + G G F AV GA V+ + D + PV Sbjct: 49 GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHETAPGTPVL 108 Query: 87 GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 DD + L+ A+TG+ GKTTT L LS+ G+ Sbjct: 109 VHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGTVE 168 Query: 145 NHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 +G V + + V+ G L S + + +A T Sbjct: 169 LRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGLVVDVAGFT 228 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL +E AKA++F E + DD + L A++ + Sbjct: 229 NLQRDHLDFHKTMEGYLEAKAQLFT-PEHARRGVVCVDDQWGAALAAEAPIEIDRVRAYP 287 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G + + ++ + ++ + L +V + A V Sbjct: 288 GDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIRAGV 347 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 A ++ G+ R + G L + P +M+ A+ + P GR Sbjct: 348 PAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKA---VRPITPGR 404 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVH 425 I V G + + + ++ + + +++A+ + Sbjct: 405 LIVVFGSDG----DRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEGVRGV 460 Query: 426 YSE--TMDG-------LFLFIQSSLVDGDVVVVKS 451 + ++ D V+V Sbjct: 461 RPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTG 495 >gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter arilaitensis Re117] gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter arilaitensis Re117] Length = 530 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 82/472 (17%), Positives = 157/472 (33%), Gaps = 46/472 (9%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G + PQ G+S++ + + P + F I G G +F+ AV GA ++ +T + Sbjct: 39 GALLNAAPQIL--GVSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTAGL 96 Query: 76 ASIGS-LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSS 132 +G LSIPV V DV + +A + + +TG+ GKTTT M+ L + Sbjct: 97 EFLGDGLSIPVAVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDA 156 Query: 133 IKKTYACIGSYNNHI---------GVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFL 178 + + IG+ P + V + + +S Sbjct: 157 LGEETGLIGTIEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGR 216 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +R ++ T + HL ++E KA++F E++ + DD + + L + Sbjct: 217 VDSLRFAVSGYTNLTQDHLDLHGTMDEYFETKAQLFTA-ERSERAVVMVDDQYGQRLAER 275 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + S+ G+ + G N + Sbjct: 276 ALVPTETLSLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGAL 335 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 +V ++DT +AL+ P + + ++D ++N++ + Sbjct: 336 AAVMVLASGVELDTLQRALNAGDPLSVAVPGRMQVVGESPVAVVDFAHNSDALA-----K 390 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413 L I P +GRRI V G E ++ + V ++ G Sbjct: 391 ALDSIRPGEQGRRIVVFGATGE----RDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAP 446 Query: 414 LKDALP-----------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 +++ + + VH F S D ++V Sbjct: 447 IREQVASGAQQVLDTERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAG-RG 497 >gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sonnei 53G] Length = 492 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 68/470 (14%), Positives = 140/470 (29%), Gaps = 45/470 (9%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 + P + +++DSR A + F A+ G DG +I A+ +G ++ Sbjct: 6 APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAK 65 Query: 76 ASIGS------LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127 +PV + + L+ LA ++ +TG+ GKTTT ++L Sbjct: 66 DEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLA 125 Query: 128 IALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLG 173 + + + N +G + E + +S G Sbjct: 126 QWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHG 185 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 ++ ++ +V T ++ HL +E +AK ++ I D+ Sbjct: 186 LVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRR 245 Query: 234 LLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 L A+ + + + + + + + E+ H +G Sbjct: 246 WLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFN 305 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 N+L+ L + L + +K + P GR + + + +A Sbjct: 306 VSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA---- 361 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 L H G+ V G G L ++ ++ + Sbjct: 362 ---LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPR 414 Query: 413 ---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + H E + DVV+V K Sbjct: 415 TEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 464 >gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 495 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LL + + V+G+ +DSR++AP +AF AI G G F+ A Sbjct: 1 MSRSMALSQLLPDV-----ALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 GA V+ + + V + L +A R ++ +TG+ G Sbjct: 56 RANGATAVLFE-PPAPDGLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164 KT+T ++L AL+ + + + +P + + Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQA 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + V +AV T + HL + + +AKA++F + Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L ++ L + S +AD + + + + L + Sbjct: 235 NLDDGFGRTLFASRDPVLRAIGVSS---RAHADASVSAQALQLDHNGINFALNIQGEVHP 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H + ++ D+ A A + + G+ R G ++ + Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A LS + H + R I V G G + ++ N Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + R + D+V++ K Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461 >gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353] gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353] Length = 486 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 88/471 (18%), Positives = 149/471 (31%), Gaps = 43/471 (9%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 LL+ ++ + V + DSR I F IKG +DGH F A + Sbjct: 4 SQLLEHLEYTCLQGSTDVKVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFAAEAAE---KG 60 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125 V S+ V VD+ A+ ++ A + T IA+TG+ GKTTT M Sbjct: 61 AAVLVVEDEVEVPDSVTVIKVDNTRYAMALISAAWFGYPAEELTTIAVTGTKGKTTTTYM 120 Query: 126 LTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSH 171 + L IG+ IG + R + D + + S Sbjct: 121 VKSLLEEAGHKVGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKMAEEDCDVVVMEASS 180 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 G T + + T ++P H+ AE K + Sbjct: 181 QGFKLDRTAGIMFDYGLFTNLSPDHIGP-----NEHKDFAEYLSCKAKLFNQCRYGYANI 235 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 + A+ I +FG ++NAD + ++ ++ V K G Sbjct: 236 DDEHFAEITKNATCPIETFGLNENADLVAYDVELTRDRDFLGVDFGLKGTCEGKISCGVP 295 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ LG +SI T + +G+ + +ID ++NA Sbjct: 296 GTFNVHNALGAISIAGHMGVTVEQMNKALRHFSVKGRVQIVPTGYDYTLIIDYAHNAVAL 355 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 L+ + + R I++ G G S+ ++ EV + S Sbjct: 356 ESI-----LNTLRAYDPPRLISLFG---CGGNRSKLRRYEMGEVSGKLADFTIITSDNPR 407 Query: 409 -FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 A+ D + + Y + GD+VV+ K Sbjct: 408 FEEPQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKG 458 >gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C300] gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C300] Length = 481 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 82/505 (16%), Positives = 155/505 (30%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAISQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154 +A TG+ GKTT LS T G + Sbjct: 114 LAFTGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + + E+ S + + + + V I P H+ E+ K Sbjct: 174 AVQNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + +N D F +LK + S ++ + + + + + Sbjct: 232 LMENSR---AVVINSDMDHFSVLKEQVEHQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + G+ Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G ID ++N + ++S + H G+ VLG GE + D Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ + + S V + + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y+++N + E +P Sbjct: 448 DAVIIAG-KGADCYQIVNGVKESYP 471 >gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bulleidia extructa W1219] gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bulleidia extructa W1219] Length = 523 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 78/354 (22%), Positives = 150/354 (42%), Gaps = 20/354 (5%) Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVD 161 + I ITGS GKT+TK ++ + + SYN +G+ +T+ + Sbjct: 173 YAQRDLIKIGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTIRNYLKPIHQ 232 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + E+G H+GEI L V+P I V+T++ P HL F +E I K ++ E L K G Sbjct: 233 VFVCEMGADHVGEITRLMKYVQPQIGVVTSVGPQHLLTFGSLENIIHEKMQMIERLPKDG 292 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKS 280 +N D+ + + + SFG D++ K + S+ V + Sbjct: 293 LGVINLDNDYIR----QYRVKNSVPLISFGIQSEDVDYRAVKISYTTTGSYFTVVHAKEE 348 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 + +G N+L + + L + +A++ E R + + Sbjct: 349 VAFHTKLLGELNIMNILSGIVVARHLGISWKSLQRAVANMEQVEHRLELKKING----HR 404 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 ID+++NANP K A+ VLS + G+R + M ++G+ ++ + + + + Sbjct: 405 FIDDAFNANPIGAKMALEVLSMMP----GKRYIITPGMIDLGKKQDEYNREFGKRMKHF- 459 Query: 401 ISHVWLSGF-HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + V L G A+++ L + H+H +T+ ++ + D +++ Sbjct: 460 VDEVILVGPKQTKAIQEGLAEMNFDADHIHVYQTVQEALAYVYEHADEHDTILL 513 >gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas axonopodis pv. citri str. 306] gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 495 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 142/478 (29%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LL + + V+G+ +DSR++ P +AF AI G G F+ A Sbjct: 1 MSRSMALSQLLPDV-----ALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 GA V+ + V + L +A R ++ +TG+ G Sbjct: 56 RANGAAAVLFE-PPAPDGLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164 KT+T ++L AL+ + + + +P + D Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQA 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + V +AV T + HL + + +AKA++F + Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L A AL + S +AD + + + + L + Sbjct: 235 NLDDAFGHTLFAALDPALRAIGVSS---RAHADASVSAQALQLDHNGINFALNIRGQVHP 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H + ++ + A A + + G+ R G ++ + Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A LS + H + R I V G G + ++ Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELKADVA 403 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + R D+V++ K Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 461 >gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 484 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 89/481 (18%), Positives = 155/481 (32%), Gaps = 60/481 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-- 62 DL + I V V GIS DSR + FFA+ G DG + A Sbjct: 1 MKLRDLAGILPVEGIASV-DLEVTGISSDSRQVKAGVVFFALAGTKADGAVYAEDAAARG 59 Query: 63 -------KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 KG+ + L +PV VDD AL + A + ++A+TG Sbjct: 60 AAAIVAGKGSTIA-----------GLPVPVLAVDDPRLALAQSAARYFGKQPEIMVAVTG 108 Query: 116 SVGKTTTKEMLTIALSSIKKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFG 163 + GKT+ A I + P+ L ++ + D G Sbjct: 109 TSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQELADAG 168 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + S G + V+ T + H+ IE+ AK +F+ L G Sbjct: 169 VTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDTLLPKG 228 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + D + + + + G+ + +L++ + + EV+ G Sbjct: 229 APAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDF-LRLKRVEHERHRQRAEVEADGVLY 287 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E+ G N L++ G+ V A+ AL GR N Sbjct: 288 EIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGA-PVY 346 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + +VL+ + P GR I V G G + ++ Sbjct: 347 VDYAHKPDALE-----NVLASVRPFTTGRVIVVFG----CGGDRDRGKRPIMGEIATRLA 397 Query: 402 SHVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V ++ + + +P +I + L GD ++V K Sbjct: 398 DVVIVTDDNPRS---EVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGK 454 Query: 451 S 451 Sbjct: 455 G 455 >gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 485 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 40/462 (8%) Query: 13 AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72 A V G ++DSR +A F A G +G DFI +K V Sbjct: 12 ASGYGLSPKEKDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 67 Query: 73 DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132 + ++ A ++A + A+TG+ GKT+ E+ + Sbjct: 68 VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTI 127 Query: 133 IKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFL 178 SY+ + P + + D ++ S G ++ Sbjct: 128 TGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR 187 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + + T+ + HL +E A+ E + GT + DD + A Sbjct: 188 SDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIA 247 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 G+K I K +L + S+ + + ++G+S ++ IG + N L Sbjct: 248 HVQKRGLKLID---IWKAEAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGL 304 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + G+V D+ + AL++ P GR +R + N +D ++ + Sbjct: 305 VRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----LR 358 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412 + + + PH EG V G G ++ HV ++ G Sbjct: 359 AAIEALRPHTEGLLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAA 414 Query: 413 AL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + K+ L + GD+V++ K Sbjct: 415 TIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 456 >gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium kansasii ATCC 12478] Length = 528 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 80/483 (16%), Positives = 148/483 (30%), Gaps = 51/483 (10%) Query: 7 FHDLLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L G + G+++ ++ + P + F A+ G G A Sbjct: 19 LAVLAAQTGAVPDGAADYPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEA 78 Query: 61 VQKGAGLVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 +++GA V+ + D VA++G + S+PV L LA R T++ ITG+ Sbjct: 79 IERGAVAVLTDADGVAAMGAHAASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGT 138 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGE 174 GKTTT ++ L + + IG+ I + + + + MS G Sbjct: 139 SGKTTTTYLVEAGLRAGGRVAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAEMSERGV 198 Query: 175 IRFLT------------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + R + T ++ HL +E+ AKA +F+ Sbjct: 199 DTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRA 258 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + ++ A + A + E + Sbjct: 259 GTVVVCVDDD---AGRAMAERAGDAITVSARDRAAHWRAVDVVPMGAAGQEFTAIDPAGV 315 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG N+ L ++IL + + +A G+ + Q F L+ Sbjct: 316 QHRVRIGLPGGYNVANCLLALAILDSIGVSPEQAAPGLRQARVPGRLEQVDRGQDFLALV 375 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ A+ + + R V G GE + V + Sbjct: 376 DYAHKPG------ALRAVLTTLTSPDRRLAVVFGA---GGERDPGKRAPMGAVAAEL-AD 425 Query: 403 HVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V ++ G A++ + + V + GDVV+V Sbjct: 426 LVVVTDDNPRGEDPAAIRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVA 485 Query: 450 -KS 451 K Sbjct: 486 GKG 488 >gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] Length = 490 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 150/472 (31%), Gaps = 38/472 (8%) Query: 7 FHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL+ + ++GI+ DSR P F A++G H DG +I A +G Sbjct: 3 LPELLRRAGLDIALPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V++ D D AL ++A A R A I AITG+ GKT+T E Sbjct: 63 AAAVLLEAD-PGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAITGTNGKTSTAE 121 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------------G 168 L + IG+ PL + + + Sbjct: 122 FLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEHVAIE 181 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNY 227 S G + + P+ A + + HL E +AK +F+ + + G N Sbjct: 182 ASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIAAFNA 241 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D ++ A + + +L + + V + E+ Sbjct: 242 DMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREMEVPL 301 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G NML+ + D A+ L H GR L+ G +D ++ Sbjct: 302 VGRFQVDNMLLACAMAGRDEGAADHAVSLLPRLHGVRGR-MERAAVLDSGAAAYVDYAHT 360 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +L + PH GR + V+G G + ++ V ++ Sbjct: 361 PDAIE-----RLLCSLRPHTPGRLVIVMGA----GGDRDRGKRPVMGEIATRLADRVIVT 411 Query: 408 GFHVL------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L GDV+VV K Sbjct: 412 DDNPRTEQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKG 463 >gi|242315788|ref|ZP_04814804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106b] gi|242139027|gb|EES25429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106b] Length = 339 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 136/327 (41%), Gaps = 9/327 (2%) Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201 ++NN +G+PLTL R+ + ELGM+H GE L + P +A++ H + Sbjct: 11 NFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMA 70 Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261 +E +A A + L G DD++ + + A I F A Sbjct: 71 TVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR---VAATGNRIVDFALHGAAGGAPA 127 Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 + S + + G ++V + +G H A+N L + L F Sbjct: 128 AVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIKVGLEAFA 187 Query: 322 PKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380 P +GR + R A T+ID++YNANP SM+AAI VL+ S R+ V+G+M E Sbjct: 188 PVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGE 243 Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 +G+ +FH ++ I ++ G DA H+ + + + ++ Sbjct: 244 VGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAAN 302 Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467 ++VK S R+++ L E Sbjct: 303 FGAHATLLVKGSRFMKMERVVDALANE 329 >gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy] gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy] Length = 493 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 79/480 (16%), Positives = 146/480 (30%), Gaps = 51/480 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T LL+AI S + IS S+ FFA G DG +I A++ Sbjct: 1 MKTLRTLLEAIGIDSTPQNASILIETISQHSKQCTANSVFFAFHGLRTDGILYIQEAIEH 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121 GA ++ + ++ + V A + A + K II ++G+ GK+T Sbjct: 61 GAVCIISDQNLSNLNLPAKVQWHQVHKPHTAFALMCSALNDNSQDKLGIIGVSGTDGKST 120 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMPVDVDFG 163 T + L L + + + + G + V Sbjct: 121 TCDYLYQILEANGVKTGLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFLRRCVENKVQKV 180 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 I E L + + A++T + HL +EE AK + L+ G Sbjct: 181 ILECTSHALSDTFDRLAGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVNLVRSLKDGGLF 240 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + D++ E A+ + D LR + +++ Q + Sbjct: 241 VTSTDNAKLEAFTAE------LRSTTKALILGKDVMLRIEFMGYQGVVVDILDQRIQTSL 294 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + + + ++ I + IK+L + + + F Sbjct: 295 LLPSLATNALLATFCASHLLGIDVTALLVLIKSLKPVKGRMQQIENTLGVRTIIDFAHTA 354 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++Y+ K G IAV G GE S + ++ + Y S Sbjct: 355 DAYDGIFFFAKRTCE---------GGDIIAVFG---CAGERDTSKRSPMGKIANKY-CST 401 Query: 404 VWLSGFHVLA-----LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L+ + L + V E+ S GD ++ K Sbjct: 402 IILTEEDPRREGNQQIFSDLRFHMNNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGKG 461 >gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus NA1000] gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Caulobacter crescentus NA1000] Length = 486 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 90/461 (19%), Positives = 154/461 (33%), Gaps = 48/461 (10%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + G++ DSR + F A+ G DG DF AV KGA ++ + L Sbjct: 14 ATDPVIAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILA---PEGGLEGL 70 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YA 138 +PV +D A A A + A +A+TG+ GKT+ + + Sbjct: 71 GVPVVRSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMG 130 Query: 139 CIGSYNNHIGVPLTL---ARMPVDVDFGIFEL--------------GMSHLGEIRFLTHL 181 +G + G P + + E+ S G + Sbjct: 131 TLGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDG 190 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 V+ A T HL +E +AK +F+ L G + + DS A + Sbjct: 191 VKLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAV 250 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 ++++S G+ + +L + V+ +G + G A N+L+ G Sbjct: 251 TSGQSVFSVGE-EGQGLRLLSRTPTPAGQDLVVEAEGVVHHLKLPLAGAFQASNVLVAAG 309 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + D +KAL GR +R G E+Y + +VL Sbjct: 310 LCIAAGEDSAKVLKALETLEGAAGRLQRVGRGPKGG------EAYVDYAHTPDGLQTVLE 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + PH G+ IAV G G L + ++ + Sbjct: 364 ALRPHTAGKLIAVFGA----GGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRA 419 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A+ +A P + + + + +GDV+VV K Sbjct: 420 AILEAAPGAREI---GDRRAAIRAAVALMSEGDVLVVAGKG 457 >gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Acinetobacter calcoaceticus PHEA-2] Length = 499 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 82/462 (17%), Positives = 146/462 (31%), Gaps = 57/462 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 G S+DSR +A + F A+ + F A+ GA V+ T++ + Sbjct: 21 PFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAVISETELGVANE-- 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + DV + + R IIA+TG+ GKTT ++ L S ++ Sbjct: 77 ----WVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRLV-AELISFQQQR 131 Query: 138 ACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTHLV 182 + + +P D+ L S G + + Sbjct: 132 CAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGC 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IAV + ++ HL +E A AKA +F I D+ ++ A Sbjct: 192 AIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAIINLDDEHAALMINAAKQNP 251 Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++ ++N D+ + + + S V +G+ +N++ L Sbjct: 252 AQPKILTYSLTQNTADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGHFNVENLVAALI 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +KAL F P+ + G + + + A I VL Sbjct: 312 ATEQAGF----DLKALVAFVPELIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQVLK 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + H + AV G G L +L + V L+ + Sbjct: 364 TLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419 Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461 >gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] Length = 536 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 85/483 (17%), Positives = 144/483 (29%), Gaps = 43/483 (8%) Query: 2 NPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 PL T +L H+ VP V GI S ++ P + F A+ G H G F A Sbjct: 30 TPLTTVLEL---TGAHAAAPVPADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDA 86 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118 V +GA V + + + L++PV + L +L+ A + +I ITG+ G Sbjct: 87 VARGAVAVFTDAEGARVLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSG 146 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE 166 KTTT ++ L++ + A IG+ IG P A + V+ G+ Sbjct: 147 KTTTSYLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQA 206 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S VR + T ++ HL + E+ +AK +FE Sbjct: 207 VVMEVSSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAART 266 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + A G+ + + AD+++ V Sbjct: 267 AVVCVDDAW---GRRLAEGLAAPITVSTTGEADWRVAGGVATVGAEQEFTAAGPAGELGV 323 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + + V GR +R + Sbjct: 324 RLRLPGRYNVANALLAVAVCAAARADPAVAAPALATVDVPGRMQRVERGQDFLAVVDYAH 383 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 A + + L+ P GR V+G G + L + Sbjct: 384 KPAALESVIATLREHLAAADPEHPGRLAVVVGA----GGDRDAGKRALMGAAGARGADLL 439 Query: 405 WLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 ++ ++ AL V + GD V+V Sbjct: 440 VITDDNPRTEDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVA 499 Query: 450 -KS 451 K Sbjct: 500 GKG 502 >gi|302561121|ref|ZP_07313463.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces griseoflavus Tu4000] gi|302478739|gb|EFL41832.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces griseoflavus Tu4000] Length = 195 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 7/187 (3%) Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 Y + A ++ R T++++ Sbjct: 1 MTMRLYGEHHVSNALAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTVVND 60 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +YNANP SMKAA+ L + R AVLG M E+G+ + + H + + N+S + Sbjct: 61 AYNANPESMKAALRALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKL 118 Query: 405 WLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 G A + + ++S L GDVV+VK+S S G Sbjct: 119 VAVGGREAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLES 178 Query: 460 LINLLLE 466 + LLE Sbjct: 179 VAQALLE 185 >gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 317 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 86/218 (39%), Gaps = 16/218 (7%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 12 HTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 71 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + G L+ +A ++ +TG+ GKT+ +++ AL + + Sbjct: 72 ITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRC 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 132 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 191 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 +AV+T ++ HL +E A+AKA++F + Sbjct: 192 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKC 229 >gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium prausnitzii SL3/3] Length = 492 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 71/470 (15%), Positives = 148/470 (31%), Gaps = 41/470 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L++ + + + I DSR AP F I G D H F KG Sbjct: 1 MKLEQLMEGVPFTLVQGSLDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFAADCAAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 +V+ D+ S + V V+ A+ ++ + T+I +TG+ GKTTT Sbjct: 61 VSALVIQHDIDLSALP-GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTT 119 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168 M+ L + Y + P + R +D + Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V + V T ++P H+ + ++ + ++ +N D Sbjct: 180 VSSQGLMMDRVAGVHYDVGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCDVGVVNID 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D L + ++G+ + AD++ +K ++ V + + + Sbjct: 239 DENTAALLE----GHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDVKV 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ L + + A+ K R FT++ + Y Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDAAIHDGLGKCVVKGRVELVPISKKFTILLD-YAH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406 N S ++ ++ L PH + V G G S+ + E+ + + Sbjct: 353 NEVSTESLLTTLRAYKPHR---LVVVFG---CGGNRSKLRRYGMGEICAKMADFSILTED 406 Query: 407 ------SGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447 + +++ + + + +GD++ Sbjct: 407 NNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLI 456 >gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 491 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 72/456 (15%), Positives = 139/456 (30%), Gaps = 41/456 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR++ P +AF AI G G F+ A GA V+ + Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPDGLPVPA 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139 V + L +A R ++ +TG+ GKT+T ++L AL+ + Sbjct: 74 DAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133 Query: 140 -----------IGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + +P A++ D + + +S + V + Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVA-MEVSSHALDQGRVDAVHFDV 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL + + +AKA++F + D L A AL Sbjct: 193 AVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVVNLDDAFGHTLFAALDPALRAIG 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + S +AD + + + + L + H + ++ Sbjct: 253 VSS---RAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAVAGALW 309 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + A A + + G+ R G ++ + + A LS + H Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA----LEQALSSLRSH 365 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 + R I V G G + ++ ++ + + Sbjct: 366 AQDRLICVFG----CGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRG 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R D+V++ K Sbjct: 422 FARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457 >gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 525 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 78/464 (16%), Positives = 156/464 (33%), Gaps = 52/464 (11%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 P +N IS DSR+ PQ F + G ++DGH F+ A+ KGA ++ + S Sbjct: 37 GSPSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGAAVLAGENAAILEEFS 96 Query: 81 LSIP---VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKK 135 P +D L +L++ R I + ITG+ GKTT + ++++ Sbjct: 97 RKFPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALGI 156 Query: 136 T------------YACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFL 178 + + P + DF + +S + + Sbjct: 157 PSGSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQR 216 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 T + +A+ T ++P HL E AK ++F + + D+ + Sbjct: 217 TAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFR--QAKRAVVNLDDEGMGADIIKD 274 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 G YS K AD + + ++ + E++L S V G + N+L Sbjct: 275 FQ--GSLLTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLS 332 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + L + I+AL GR + + + + ++ Sbjct: 333 AICTAMHLGFTIGQIIEALPRVENPSGRFEVLKEFGRRKIIIDYAHT----------PVA 382 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW------------- 405 + S + + ++ + +G + +A+ V Sbjct: 383 LKSLLKEAKKLPHKRLIVMITGIGIRDKEKMPQMAQ-AVENQADQVIVSVDHPGFLDPWE 441 Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + G + + PR+ ++ T L S + D++++ Sbjct: 442 VVGHVMKGFSN--PRAGNILQEPTRRDGVLAALSVSDEDDLILL 483 >gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] Length = 484 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 76/420 (18%), Positives = 140/420 (33%), Gaps = 32/420 (7%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++ +A+ V G +ID+R +AP F A +G +G D+I AV+ GA Sbjct: 12 AEVAKAVSA---AGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGAIA 68 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 +V + +LA +A+TG+ GKT+T E+ Sbjct: 69 IVA----RPEAQVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELAR 124 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFEL--GMSHLG 173 + A IG+ V + G+ S G Sbjct: 125 QIWRMLGHNAASIGTLGVTTSVDQVSTGLTTPDIVTFLANMAGLRREGVTHAAFEASSHG 184 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 ++ T + T ++ HL ++ AK +F+ + + + D + Sbjct: 185 LDQYRTEGLPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDSWS 244 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + S G A QL +E++ +G +V IG + A Sbjct: 245 EKAIARATKRGLRVLSVGVQGRA-LQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGAYQA 303 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N L G+V D ++ L P GR G +D ++ + Sbjct: 304 ANALTAAGLVIATGGDAARVMELLGRVQPVRGR-LERAVISQTGAPVYVDYAHTPDG--- 359 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 + + + PH +GR I + G G+ + +V + + HV ++ + + Sbjct: 360 --LRAAIEALRPHTKGRLITLFGA---GGDRDAGKRPQMGKVAADLS-DHVIVTDDNPRS 413 >gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 3_1_53] gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae bacterium 3_1_53] Length = 523 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 79/366 (21%), Positives = 149/366 (40%), Gaps = 27/366 (7%) Query: 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149 D L + +II ITGS GKT+ K +L LS + T GSYNN +G+ Sbjct: 169 DAQRLLQEHG-------DLSIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMGI 221 Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 ++ + + E+G H+ EI L V+P V+T++ P HL+ F ++ I Sbjct: 222 TLTIRTKLQHLHEVFLCEMGADHVREIHDLMQFVKPRYGVVTSVGPQHLATFGSMDNILH 281 Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268 K ++ E L G F+N D+++ + I FG ++AD++ + E Sbjct: 282 EKMQMIECLPLDGIGFVNRDNAYIQS----YTIKNKCHIVWFGMHESADYRCSNIRYSEE 337 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 + V + + +G H N+ + + L + A+ E Sbjct: 338 GTSFTVTAENQEHSFHTRLLGKHNVVNITCAIAVAHTLGISWEIMALAVEKLPYVE---- 393 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 +R + + F TL+D++YN+NP + A+ V+ Q+ + E+GE + Sbjct: 394 -HRLQVRKSFCTLLDDAYNSNPEGARCALEVIKQMKHKR----FIITPGFLELGEKQEEE 448 Query: 389 HIDLAEVLSLYNISHVWLSGF-HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443 L + ++ + L G ++ L + +++ ++ +Q Sbjct: 449 QYTLGQEIADS-VDVALLVGRIQTKSIVKGLQARQFPAQNIYICDSFQEALSIVQKQADP 507 Query: 444 GDVVVV 449 D V++ Sbjct: 508 QDCVLL 513 >gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. Fw109-5] gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. Fw109-5] Length = 534 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 78/490 (15%), Positives = 139/490 (28%), Gaps = 63/490 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 ++Q + ++ DSR + P FFA+ G DGHDF A +G Sbjct: 38 MKLSAVIQGTGARGEAAD-DHEIVLVTGDSREVVPGALFFALPGAVRDGHDFAAQAAARG 96 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A +V + + +L V A+ A R + +TG+ GKTT Sbjct: 97 AVAIVAERPVACAPAAL----LLVPSSRRAMAVAAANFHGRPADALRVAGVTGTNGKTTV 152 Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167 ++ + +G+ + LA M + Sbjct: 153 TYLVEACARAADLPVGVLGTVTQRFPGVERPASHTTPESTTLHAVLAEMRAAGTRAVVLE 212 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLN 226 SH + + R A T + HL ++ A+ + E L G +N Sbjct: 213 VSSHALAQERVGGM-RFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPDGVAVVN 271 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + L A+ + ++ +G + + + + Sbjct: 272 ARDPYGARLAAQL--GPGRRVWRYGTRADDTLRAEAVSTGLAGIAATFATPAGPIAIRSP 329 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G H +N+L G+ L D + LS GR +G +D ++ Sbjct: 330 LVGAHNLENLLCAAGLALALGIAPDAVGRGLSASAGAPGR---LERIDGRGVSIFVDYAH 386 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + L + R + V G G L ++ V + Sbjct: 387 TDDALG-----RALEALRALAPRRLLCVFG----CGGDRDRGKRPLMGEVAARGADLVVV 437 Query: 407 SGFHVL------ALKDALPR-----------------SIHVHYSETMDGLFLFIQSSLVD 443 + + + D LP + S Sbjct: 438 TSDNPRTEAPEAIIADVLPGLERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHP 497 Query: 444 GDVVVV--KS 451 GD V+V K Sbjct: 498 GDAVLVAGKG 507 >gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM 14600] gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM 14600] Length = 511 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 69/469 (14%), Positives = 137/469 (29%), Gaps = 51/469 (10%) Query: 16 GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75 G +G Q + +S DSR + P F KG + DF+ A ++GA + Sbjct: 26 GERLGESLQREITLVSCDSRKVIPGTLFIC-KGAGF-REDFLRMAKERGAAFYLSEKPYE 83 Query: 76 ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI 133 + +P GV D+ A+ A R ++ ITG+ GK+TT L Sbjct: 84 G----VDLPWIGVSDIRAAMAHSASFCYDRPWEAFRLVGITGTKGKSTTAFFLKAIFDVY 139 Query: 134 KKTYACIGS----------------YNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGE 174 +K+ S P+ L + + + +S Sbjct: 140 EKSRGGRPSGLISTILTEDGKESRPSRMTTPEPIELEEHFANAREAGLDYVTMEVSSQAL 199 Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 V+ +A I H+S +++ + + D E+ Sbjct: 200 KYDRVLDVQFDVAAFLNIGYDHISPIEHPTWEDYFASKLRIFSQCRTAVVHLGVDHSEEM 259 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L A A + T + AD K+ ++ + ++ G+ E + G+ Sbjct: 260 LAAAQKARKVIT--FSETDERADVYGYGMKKQGRETHFKARVLGQEREYILGIPGFFNVS 317 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + D + L + Y N S + Sbjct: 318 NALAAIAVAEHYGIPYDCVKEGLKRARVPGRMEEYTSADGKIVTIID----YAHNRLSFE 373 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410 + + P ++ G + + DL EV + N +++L+ Sbjct: 374 KLFAAAKEEFPGRR-----IVALFGASGGKAINRRRDLGEVAA-ANADYIYLTEDDPGRE 427 Query: 411 -----VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + ++++ K Sbjct: 428 DPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPTLLLLAGKG 476 >gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Planococcus donghaensis MPA1U2] gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Planococcus donghaensis MPA1U2] Length = 499 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 65/494 (13%), Positives = 162/494 (32%), Gaps = 66/494 (13%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + I +S + AFF + G + DGH +I A+ GA ++ + ++ + + Sbjct: 18 GPEYSTFSSIEYNSTLVVQDCAFFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEYA 77 Query: 81 LSIP---VFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKK 135 P V +V AL L+ + +I +TG+ GKTTT + + + Sbjct: 78 KQHPDLSFAVVPNVREALAYLSDFFYRSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGI 137 Query: 136 TYACIGS-----------YNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFL 178 IG+ + + + + E + +S + + Sbjct: 138 GCGFIGTTGILRMDGKIPFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMR 197 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 +R +A+ T I+ HL E +K +F+ + + + + Sbjct: 198 VEGIRFDVAIHTNISEEHLEYHKIFEHYLQSKLMLFKQSKAAVVNV------DDKGMAKE 251 Query: 239 SHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + ++ ++ D + ++ +G+ + G + A N+ Sbjct: 252 ILEVISYPHLTYSNRVDSGADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANL 311 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 +G + +++ + L EGR + + N+ + Sbjct: 312 TAAIGSALLSGQNIEAIVTVLPKMSQVEGRFQVIQGPDNRKVILDYAHT----------P 361 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFH-- 410 +++ + ++ + ++ + +G S +A+ + + ++ G + Sbjct: 362 VALSAVLNEVKKLSHNRLIALIAGIGIRDFSKMPKMAK-AAEGKADVLVVTVDHPGDNEP 420 Query: 411 ---VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSS-NSCGFYRLI-- 461 + A+ P V + + L D++++ S N +++ Sbjct: 421 SVVIDAVLKGFTVPYKQQVITANSRREAVLAALKESGPEDIILLSSGSINGA---QIVKG 477 Query: 462 -------NLLLEEF 468 ++EEF Sbjct: 478 EYIPHSDEAIIEEF 491 >gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium 2_1_46FAA] Length = 508 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 70/462 (15%), Positives = 146/462 (31%), Gaps = 48/462 (10%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 Q + ++ DS+ + F KG + +++ AV+ GA + Sbjct: 29 GKEQTTIEQLTFDSKKVTENTLFIC-KGMAFK-EEYLKEAVKNGAVCYISEQKYE---LD 83 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI----- 133 +P V D+ A+ LA + + +I I G+ GK+T+ + L Sbjct: 84 EDVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKGKSTSVYYMKSILDDYLAANG 143 Query: 134 ---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLT 179 Y + +HI P R V+ E+ +S Sbjct: 144 KKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVNCGMEFVEMEVSSQALKYGRV 203 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 + + +AV I H+S + +++ + + D +L+A Sbjct: 204 NEMMFDVAVFLNICEDHISPIEHKDFEDYFSSKLLIFQKTKTAVVNLDADFSDRILEAAQ 263 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 A + TI + K++NADF + + + V+ E G+ +N L T Sbjct: 264 CAPKVVTIST--KNENADFYAYNIHKEGDGTIFNVRCAEFDKEFELTMPGFFNVENALAT 321 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 + + + V+ L R + + + Y N S + S Sbjct: 322 IAVANQFNIPVEFMYSGLKKAR----SSGRMELSTSDDNKIIAVVDYAHNKLSFEKLFSS 377 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410 + + P E ++ G+ + + DL + Y V+L+ Sbjct: 378 IKEEYPDRE-----IISIFGCPGKKAFTRRRDLGTIAGKY-AKKVYLAAEDPGYEPVEEI 431 Query: 411 VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + E S+ + ++++ Sbjct: 432 SRDIAEYVEAQGCPYEMIEDRGEAIKKAIESVENPSILLITG 473 >gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] Length = 488 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 81/453 (17%), Positives = 146/453 (32%), Gaps = 34/453 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 I+ DSR + F A G H DG +I AVQ GA VV + + Sbjct: 8 NKSFTSITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQV 67 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-I 140 V D+ + +A K T+I +TG+ GKT+ + + L+ + K A Sbjct: 68 SNLAVQDLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKTAVLG 127 Query: 141 GSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSHLGEIRFLTHLVRPHIA 187 N +G A D + +S G + + V +A Sbjct: 128 TIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVAFDVA 187 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A+AK ++F I D L+ A + Sbjct: 188 VLTNLSRDHLDYHETMEAYAAAKQKLFAWEGLITAIVNTDDAFGKSLVSALNAQDKPCLT 247 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 Y +AD Q K M++ + +G A N+L L + L Sbjct: 248 YGL---TSADVQGSDLKLHDTGLTMQINTPQGHALLSAPVLGRFNAYNVLAVLATLLALK 304 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + +++A++ P G+ + +ID ++ + + Sbjct: 305 VSLPDSLEAIAKIKPV--LGRMQQFGGGDLPLVVIDYAHTPDALEKVLSTLKEQIDLAAS 362 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRS 421 + I V G G + L ++ V+++ + + + Sbjct: 363 SVKLICVFG----CGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPAAIIAAVVSEM 418 Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451 + + GD+V+V K Sbjct: 419 KAGYVVDADRANAIRAAIQGANSGDIVLVAGKG 451 >gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. M62/1] gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. M62/1] Length = 487 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 141/469 (30%), Gaps = 50/469 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D L+ ++ + + DSR F +KG + D HDFI ++ G ++ Sbjct: 4 DWLKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKIL 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEML 126 VV ++ + V V++ AL L A K I +TG+ GKTTT M+ Sbjct: 64 VVEREVSE--IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKTTTTYMI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMS 170 L + K IG+ IG + + ++ + E+ S Sbjct: 122 KSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEV--S 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + I+ H+ + EE K ++ + Sbjct: 180 SQSYLMHRVDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYKKQLLKN-------CKTAI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + I++F + ADF+ + S ++ + Q + + Sbjct: 233 VNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKV 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L L + +D ++ R T+I + + Sbjct: 293 NVPGRFNAANAL-ASVALCSFLDLPKPKVAHGLEHLKIDGRMEIVYKSSKMTVIVDYAHN 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + S+L + + R + V G G + ++ Sbjct: 352 AVS----MESLLKTLRDYKPKRLVCVFG----CGGNRAKERRYSMGEIGGNLADFCIITE 403 Query: 409 FHVL---------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + +K L S F S DGD++ Sbjct: 404 DNSRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMI 452 >gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis ATCC 15912] Length = 481 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 72/486 (14%), Positives = 149/486 (30%), Gaps = 66/486 (13%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G + + IS DSR ++ FF +KG ++ +++ A+ G G V D Sbjct: 22 VNGEYYYHLEGTRFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGLGFYVSEKD 79 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 + IP V+D+ A++ +A+ + ++A TG+ GKTT L Sbjct: 80 Y-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAAYFAYHILE 134 Query: 132 SIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEI 175 + G + + D I E+ S + Sbjct: 135 QSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAQAVANDRTHLIMEV--SSQAYL 192 Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + + + V I+P H+ E+ K + + + + +N D F+ Sbjct: 193 VKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMKN---SQAVVINSDMDHFQ 249 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +L + S +++ + + + + Sbjct: 250 VLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGDYDIQLIGHFNQE--------- 300 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + + G+ G ID ++N + Sbjct: 301 ----NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS--- 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWL 406 +LS + H G VLG GE + H ++ L+ + ++ Sbjct: 354 --LKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY--- 408 Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINL 463 LA+ + + I V + + + D V++ Y+++N Sbjct: 409 --EDPLAIAEEISSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAG-KGADCYQIVNG 465 Query: 464 LLEEFP 469 + EE+P Sbjct: 466 VKEEYP 471 >gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] Length = 487 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 153/476 (32%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL + VP V+GI +DSR +A + F AI G DG +I A+ G Sbjct: 1 MKLAELLTMLPTSF--SVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYIDAAIDAG 58 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++ +A + V G V L+++A K ++ +TG+ GKT+ Sbjct: 59 AAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFGHPSEKMNLVGVTGTNGKTSV 118 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166 ++ ++ A IG+ + G+ L + Sbjct: 119 THIMAQLAKALGMEAAVIGTTGS--GLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVA 176 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S I+ + A IT I+ HL +E +AK +F + Sbjct: 177 MEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNRVVNA 236 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD+ + L + S + Q + + S + QG+S V Sbjct: 237 DDDTLSHWQQDDLADLWVSLNASPNEPC---LQATGVQFHEQGSVFSLNWQGESCVVETP 293 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L + ++ L + KA P GR + + + + Sbjct: 294 LLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAFHNNQSPLVVVDYAHTP 353 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +A VLS + H +GR V G G ++ V + Sbjct: 354 DA-------LHQVLSALRLHCKGRLWCVFG----CGGDRDRGKRPQMGKVAADYADVVVV 402 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + V + DVV++ K Sbjct: 403 TDDNPRTEPAEQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKG 458 >gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium abscessus ATCC 19977] gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium abscessus] Length = 515 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 79/481 (16%), Positives = 143/481 (29%), Gaps = 51/481 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISI---DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 DL + G V G+++ D+R+ + F A+ G G F AV Sbjct: 18 VSDLASLVSAELHG-PSATTVGGVTLRAQDART---GDLFAALPGTSTHGAQFASEAVSA 73 Query: 64 GAGLVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 GA V+ + + L I V L +LA ++ +TG+ GK Sbjct: 74 GAAAVLTDAAGAELVAGQGLDIAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGK 133 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166 TTT ++ L + K IG+ I + + + E Sbjct: 134 TTTTYLVEAGLRAAGKRVGLIGTVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTV 193 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTI 223 + +S R + T ++ HL +++ A+ + ++ Sbjct: 194 VMEVSSHALALNRVDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRS 253 Query: 224 FLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + DD + A T S AD++ + V Sbjct: 254 VVCIDDDAGRAMAELAREAGPDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDT 313 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + N+ L ++IL +A A G+ A Q F ++ Sbjct: 314 ELTI--ALPGHYNVANCLVAIAILDVLGVSAATAAPGIATAGVPGRMEAVAAGQPFLAVV 371 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ +VL + H +GR V G G + D+ +V + Sbjct: 372 DYAHKPGA-----LRAVLESLRSHRDGRLAVVFGA---GGNRDRGKRADMGKVAAEL-AD 422 Query: 403 HVWLSG-----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V ++ A++ + + F GD V+V K Sbjct: 423 LVVVTDDNPRNEEPAAIRTEIISGTTGSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGK 482 Query: 451 S 451 Sbjct: 483 G 483 >gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 83/483 (17%), Positives = 148/483 (30%), Gaps = 52/483 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL+ H++ P V G++ID+ + P F A+ G G + AV Sbjct: 1 MKLSDLMAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60 Query: 63 KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +GA V+V+ ++ + V V DV A +A +IAITG+ GK Sbjct: 61 RGAVAVLVDQQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKK----------------TYACIGSYNNHIGVPLTLARMPVDVDFG 163 T+ M L ++ S + P + D Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 L + +G + + V T + HL + +E AK +F+G Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD ++ ++ +AD++ + S + G+ Sbjct: 239 RAVVNADDPVGAGIRKLMPGAVT----TYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G N L T+ +L + + AL GR +R + + Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQISGGTSVIVD 354 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 S + VL+ I GR I V G G + ++ + Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRADMGAIAGTHS 403 Query: 402 SHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 L+ + + D + + I + D+V++ Sbjct: 404 DVCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAG 463 Query: 450 KSS 452 K S Sbjct: 464 KGS 466 >gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M143] gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M143] Length = 481 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 152/493 (30%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ QGH + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDSLFREIIDQGHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAITQGLGWYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT L+ + G + + +F++ Sbjct: 114 LAFTGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQ 173 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + R + A + + ++ + + Sbjct: 174 AVHNGRSHLIMEVSSQAYLVK------RVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----- 285 LL S A+ I + + ++ QS +++ Sbjct: 228 HKRLLMENSRAVVINSDMDHFSVLKEQVENQEHDFYGSQSSNQIENSKAFSFSATGKLAG 287 Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + I N + + G+ G ID Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + ++S + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + S V + + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y+++ E++P Sbjct: 459 CYQIVQGKKEDYP 471 >gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM 43827] gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM 43827] Length = 527 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 82/465 (17%), Positives = 151/465 (32%), Gaps = 47/465 (10%) Query: 7 FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 +L + V G+++ ++ + P + F A+ G G DF AV++GA Sbjct: 37 ASELAATVDARLTSPAGAPVLVTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGA 96 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123 V+ + D + +PV D AL L+ + +TG+ GKTTT Sbjct: 97 VAVLTDEDGASRPELRDVPVLVHRDPRAALGALSARVYGEPAQRVALWGVTGTSGKTTTS 156 Query: 124 EMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFGIFELGM-- 169 M+ L + + +G+ P A + V V+ G+ + M Sbjct: 157 YMIESCLRAEGRVTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEV 216 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + T ++ HL +E+ AKAE+F+G + + ++ Sbjct: 217 SSHALRLGRVGGAGFAVGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARREVVCVDG-- 274 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L T G + A EQ++ G + V G Sbjct: 275 EWGRRLVKPGTVTVSATAPVGGATWTASGVRVSAT--GEQTFTAHGPDGLELAVALRLPG 332 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N L+ +G + + ++ L+ + G+ R + Q F ++D S+ Sbjct: 333 DFNVANALLAIGCLHASGVGAEAIVRGLAE---VQVPGRMQRVDVGQDFTAVVDYSHKPA 389 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408 + L + GR I VLG G + L + + ++ Sbjct: 390 A-----VVLALDAVRARATGRVITVLG----CGGDRDTAKRPLMGAEAARRSEVLVVTDD 440 Query: 409 ----FHVLALKDA-------LPRSIHVHYSE--TMDGLFLFIQSS 440 A++ A +P + E S Sbjct: 441 NPRSEDPAAIRAAVLAGALEVPEAERGEVVEIGDRGAAIAHAVSL 485 >gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] Length = 495 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 81/455 (17%), Positives = 143/455 (31%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++G+ +DSR + P +AF A+ G G FI A +GA ++ + Sbjct: 19 DVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK------- 134 V + L +A T++ +TG+ GKT+T ++L A + Sbjct: 79 A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 137 Query: 135 ------KTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187 + + + L + + + +S + V + Sbjct: 138 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVV 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL +E +AKA +F + +N DD F L + Sbjct: 198 VFTNLTRDHLDYHGDMEHYGAAKARLFAHQD-VQAAVINVDDPFGLRLLHGLAKGMRRVG 256 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S +AD + + ++ + V +G N+L G++ L Sbjct: 257 VSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALN 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + LS P GR R G ++ + + A VLS +S H Sbjct: 317 YALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSHV 370 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 GR I V G G V++ N V+++ + + Sbjct: 371 CGRLICVFG----CGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGF 426 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V DVV++ K Sbjct: 427 ARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKG 461 >gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Deinococcus proteolyticus MRP] gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Deinococcus proteolyticus MRP] Length = 504 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 63/489 (12%), Positives = 134/489 (27%), Gaps = 60/489 (12%) Query: 1 MNPLWTFHDLLQAIQGH----SIGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGH 54 M P+ DL + V+ ++ R+ + P F AI+G +DGH Sbjct: 1 MMPVMLLSDLASHLSLRSGPSVETGWAAAEVSAVTH--RADWVTPGALFAAIRGERHDGH 58 Query: 55 DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIA 112 F+ A ++GA + + + +P V D AL A + ++ Sbjct: 59 AFLQEAAERGAVAALGE--GLPAGQHSPLPYLQVPDARAALADAAALLSGHPSRELKVVG 116 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---------DFG 163 +TG+ GKTTT + L + + + +P R Sbjct: 117 VTGTDGKTTTSWLTAALLRA--GGQSTGLLSSAGYQLPDGQLRAYPAHFTTPEAPQLQGL 174 Query: 164 IFEL-----------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 + E+ SH + + + A+ T ++ HL +E+ +AK Sbjct: 175 LREMVDARAQAAVIETSSHALTLERVRGVA-WDAAIWTHLSQEHLDFHGTLEDYFAAKRR 233 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + + + + AD++ + + Sbjct: 234 LIERAPLAVLNLDDPWTRHLRGVAPQE-------LTYSAAQAGADWRASDLRGEAGGRAS 286 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + + ++A Sbjct: 287 FAVDGPAGRFRATLPLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVP 346 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + + D ++ + + L + P G+ AV+G + S+ Sbjct: 347 SRPGQPRVVSDSAHTP-----LSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGP--- 398 Query: 393 AEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ V L+ +L A + + + Sbjct: 399 MAAVASAWADQVILTEADHRETPLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPD 458 Query: 445 DVVVV--KS 451 D V++ K Sbjct: 459 DTVLIANKG 467 >gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus parasanguinis ATCC 903] gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus parasanguinis ATCC 903] Length = 481 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 72/486 (14%), Positives = 148/486 (30%), Gaps = 66/486 (13%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + G + + IS DSR ++ FF +KG ++ +++ A+ G G V D Sbjct: 22 VNGEYYYHLEGTSFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGLGFYVSEKD 79 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 + IP V+D+ A++ +A+ + ++A TG+ GKTT L Sbjct: 80 Y-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAAYFAYHILE 134 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEI 175 + G + + D I E+ S + Sbjct: 135 QSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFSMMAEAVANDRTHLIMEV--SSQAYL 192 Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 + + + V I+P H+ E+ K + + + + +N D F+ Sbjct: 193 VKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMKN---SQAVVINSDMDHFQ 249 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 +L + S +++ + + + + Sbjct: 250 VLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGNYDIQLIGHFNQE--------- 300 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 + + G+ G ID ++N + Sbjct: 301 ----NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS--- 353 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWL 406 +LS + H G VLG GE + H ++ L+ + ++ Sbjct: 354 --LKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY--- 408 Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463 LA+ + + I V + + D V++ Y+++N Sbjct: 409 --EDPLAIAEEISSYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAG-KGADCYQIVNG 465 Query: 464 LLEEFP 469 + EE+P Sbjct: 466 VKEEYP 471 >gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf. saccharolyticum K10] Length = 487 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 143/469 (30%), Gaps = 50/469 (10%) Query: 9 DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68 D L+ ++ + + DSR F +KG + D HDFI ++ G ++ Sbjct: 4 DWLKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKIL 63 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEML 126 VV ++ + V V++ AL L A K I +TG+ GKTTT M+ Sbjct: 64 VVEREVSE--IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKTTTTYMI 121 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMS 170 L + K IG+ IG + + ++ + E+ S Sbjct: 122 KSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEV--S 179 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 + + + I+ H+ + EE K ++ + Sbjct: 180 SQSYLMHRVDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYKKQLLKN-------CKTAI 232 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + I++F + ADF+ + S ++ + Q + + Sbjct: 233 VNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKV 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L V++ + K + G+ + ++D ++NA Sbjct: 293 NVPGRFNAANALASVALCSFLDLPKAKVAHGLEHLKIDGRMEIVYKSSKMTVIVDYAHNA 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +L + + R + V G G + ++ Sbjct: 353 VSMES-----LLKTLRDYKPKRLVCVFG----CGGNRAKERRYSMGEIGGNLADFCIITE 403 Query: 409 FHVL---------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + +K L S F S DGD++ Sbjct: 404 DNSRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMI 452 >gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC 23134] gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC 23134] Length = 525 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 149/367 (40%), Gaps = 23/367 (6%) Query: 96 NKLAVAAR--------LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 ++A + +I ITGS GKT+ K LT LS GSYN + Sbjct: 157 QRIAQWYYADARRIIKSMPQLKVIGITGSYGKTSVKHFLTRILSEKYNVVMTPGSYNTPM 216 Query: 148 GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206 GV +T+ + + + E+G +G+I+ L +L P I ++T +A HL F IE I Sbjct: 217 GVTITIRNHIKPIHEIFVCEMGAKQIGDIKELCNLAHPQIGILTAVADQHLDTFGSIENI 276 Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266 K E+ + L K G +LN+D + + +H YS + Sbjct: 277 QKGKFELIDALPKDGVGYLNFDYEYVKNHSPIAHVEN--HAYSLHQPDADYQARDLQYTA 334 Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326 + K ME+ +G N+L+ + + A+ P + R Sbjct: 335 KGMQFSVYHKNEKVMELETKLMGEANMSNILVCCAVALRFDVPIKNIQFAVKNLQPVKHR 394 Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386 N G T++D+++N+NPA K A++VL QI G+++ + M E+ E Sbjct: 395 ---MELKRNPGGITILDDAFNSNPAGAKMALNVLKQI---EGGQKVIITPGMIELAEKEY 448 Query: 387 SFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSL 441 + L E ++ ++ + L G L +++ L ++ + + + Sbjct: 449 ELNKVLGEQIAE-HVDYAILVGPKQTLPIQEGLKNKNYPEDRLYIARNLTDANQHLMKIA 507 Query: 442 VDGDVVV 448 GDVV+ Sbjct: 508 KAGDVVL 514 >gi|218678972|ref|ZP_03526869.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium etli CIAT 894] Length = 117 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 53/108 (49%), Positives = 69/108 (63%) Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + G GRRIAVLGDM EMGE +Q H DLA L I HVWL+G + ALK++LP S+H Sbjct: 3 ARPGRGRRIAVLGDMLEMGEYAQKVHSDLAVPLLAAGIEHVWLAGAEMAALKESLPESVH 62 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471 V Y E L ++ S+V GDV +VKSS GF +++ LL++FP Sbjct: 63 VEYRENTSELTDYVLDSVVPGDVFMVKSSLGIGFGKIVAALLDKFPPF 110 >gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] Length = 506 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 68/485 (14%), Positives = 139/485 (28%), Gaps = 54/485 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISI---DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 T ++ ++ +S DSR + F+A KG DG DF+L A + Sbjct: 9 TLQEVAAFLE-----EDKNVGTCSLSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQE 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAAR--LRSKATIIAITGSVG 118 +GA ++ + D S L + + + + A SK +I ITG+ G Sbjct: 64 QGAAAIICDYDKDPSAEQLKDVTIPLLHLKKGMSVGEFASWFYFSPSSKLRLIGITGTNG 123 Query: 119 KTTTKEMLTIALSSIKKTYACI--------GSYNNHIGVPLTLARMPVDVDFGIFE---- 166 K+T +++ L+ + A + L+ + + + E Sbjct: 124 KSTVTQLIAQYLALFNRKCAVFGTLGYGFLPNLKQSSNTTLSAIALQKALAEAVKEGADY 183 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222 L +S +G T + HL +E A + + Sbjct: 184 AALEVSSIGVCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPDHLCL 243 Query: 223 IFLNYDDSFFELLKAK----SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + LK + S + K+A + + + + + Sbjct: 244 NVDDAMGKTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSF 303 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + +G A+N L L ++ + + S P GR + + Sbjct: 304 GKGDASLSLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRMECFYKEGKPRM 363 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 + + ++ + + S G+ VLG G + + + Sbjct: 364 IVDYAHTPDGVESA------LKAARSHTPGGKVWCVLG----CGGDRDKGKRPMMAIKAC 413 Query: 399 YNISHVWLSGFHVL-----ALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVV 448 V + + + + + + + D VV Sbjct: 414 VYADKVIFTSDNPRTEDPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVV 473 Query: 449 V--KS 451 V K Sbjct: 474 VAGKG 478 >gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia 3_1_6] gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia 3_1_6] Length = 482 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 85/452 (18%), Positives = 142/452 (31%), Gaps = 44/452 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 + IDSR P F A+ G DG FI AV +GAG VV + + G + Sbjct: 18 LCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPESAGNCGEAEV--VDCA 75 Query: 90 DVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKK---------TYA 138 D AL LA A ++ +TG+ GKTTT +L +S K Sbjct: 76 DPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLLDHLFASAGKKTGVLGTVSYRW 135 Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193 + + P L + D + + +S + V AV + + Sbjct: 136 PGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSHALDQNRVAGVGFGGAVFSNLT 195 Query: 194 PAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 HL +E AKA++F +G + D+ + A I + Sbjct: 196 QDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTDNPWGARLAGMAPEAIGFGLTA 255 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 + + + + + + +G+ E +G + A+N+L + D Sbjct: 256 SGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVGNYNAENLLAVQAVALGFGLDP 315 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + A F G R LN + + + A I+VL+ + G R Sbjct: 316 E----AFRCFETFCGVPGRLERILNPQNLDVFVDYAHTPDA----LINVLNALRGAGFKR 367 Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRS 421 + V G G L L+ + + D L + Sbjct: 368 IVTVFG----CGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAIMADVMPGLSGA 423 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V L GD +++ K Sbjct: 424 AEVFADPDRRRAIEKGLELLHPGDALLIAGKG 455 >gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale ART12/1] Length = 104 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 3/107 (2%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T L+ + + + I+ DSR + F I G DG+ FI A++ G Sbjct: 1 MTIEQLVSVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 A ++ D+ I V V ++ A+ + Sbjct: 61 ACAIMTEKDVEV---PADITVIKVPNMREAMELAVPYFYDYPGKKCV 104 >gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 540 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 83/479 (17%), Positives = 153/479 (31%), Gaps = 55/479 (11%) Query: 15 QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74 G+ + ++G++ S++++ E FF + G YDGH F A KGA ++V + Sbjct: 25 SGNIKQALDDIKISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVERE- 83 Query: 75 VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132 I + + V++ AL+ L+ +I IT + GKTTT M+ LSS Sbjct: 84 ---IPHIPLLQVVVENSRRALSHLSAKFYQHPSKSMNMIGITSTNGKTTTTYMIDQILSS 140 Query: 133 IKKTYACIGSYN--------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178 K T + + LA M + +S G Sbjct: 141 NKPTGLLGTVIVKLGEETKESDLTTPESLDLQRYLASMKRKNINYCT-MEVSSSGLELER 199 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 V IA+I I+ H+ E +AK + E +++ +N D + Sbjct: 200 VSAVDYDIAIINNISRDHIDQHGSFENYFAAKQRLVEEIQEDKRAVINVDCENACKMIN- 258 Query: 239 SHALGIKTIYSFGKSKNADFQLRK----------WKQCSEQSWMEVQLQGKSMEVVHHGI 288 + T G + ++ ++ + Sbjct: 259 YTKAKVITYSVKGIDATIGIDNLDLSSGSASFDLVINRGFSTLSGKWIKPGRFKIKLKVL 318 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N +L + L+ F E R + + I + + A Sbjct: 319 GLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQLIFDKKFK-----IIDDHFA 373 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406 NP +++ + L ++ + A+ G + + L + L N+ V++ Sbjct: 374 NPGNIEVTMETLGKMDFNNLKILYAIRGGRGKTVNEENT--KALIKWLKKLNLQEVYVTS 431 Query: 407 ----SGFHVLALKDA--------LPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKS 451 G I V Y + I+ L GDV+++ Sbjct: 432 SDEIVGIENKVTMTERDTTLSLLKSAGIRVRYFSQLRSAIKSVIIERHLQTGDVLLLAG 490 >gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 555 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 87/505 (17%), Positives = 146/505 (28%), Gaps = 60/505 (11%) Query: 2 NPLWTFHDLLQAIQ--GHSIGIV---------PQGFVN--GISIDSRSIAPQEAFFAIKG 48 PL L + + P V+ GI+ DSR + P + + A+ G Sbjct: 6 TPLRPLSALAALLGPDASLLRPDLGADRPPEVPDREVHVRGITHDSRQVGPGDLYAALPG 65 Query: 49 PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-- 106 G DF A + GA V+ + D + +PV V DV L A Sbjct: 66 TRAHGADFAGQAAEAGAAAVLTDGDGAERAAATGLPVIVVPDVRAVLGTAASWVFKDPAQ 125 Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGI 164 +I TG+ GKTT ++ L +G+ +G ++ + P D Sbjct: 126 DLLLIGTTGTSGKTTVTYLVESGLRHAGMRTGLVGTVEMRVGDERVVSSLTTPEATDLHG 185 Query: 165 FELGMSHLGEIRFLTHL------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212 M G + R +AV T ++ HL S + + AKA Sbjct: 186 LFALMRERGVSAAAMEVSSHALALSRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKAR 245 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF----------GKSKNADFQLRK 262 +F E +N DD F L A G + +F + AD++ Sbjct: 246 LFT-PEYCDIAVVNADDRFGRALVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVD 304 Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322 + + S + G + + M + + A P Sbjct: 305 VRLGAMGSAFRIVGPGGMEANASVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAP 364 Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 A + A +VL+ + EG V+G G Sbjct: 365 GVPGRMEPVVANAVPHAFQDFTALVDYSHKPGAIEAVLTALRATTEGGLTMVVG----CG 420 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSE----- 428 L + + ++ + ++ + + + H + Sbjct: 421 GDRDRAKRPLMGEAAARLSDQLVITNDNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEF 480 Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451 GDVVVV K Sbjct: 481 DRAEAIRLAVERARPGDVVVVAGKG 505 >gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] Length = 487 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR + P + F A+ G DG I A+ KGA V + + Sbjct: 15 DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCCIVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R + + +S G + + IA Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AKA++ +N DD F L + + T Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +A R+ + + + +G N+L +G + L Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L GR R ++D ++ + VL + PH Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R + + G G + L ++ V ++ + ++ Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + + +S DVV++ K Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455 >gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] Length = 486 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 147/454 (32%), Gaps = 59/454 (12%) Query: 38 APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--------VFGVD 89 P + F A+ G G DF A+ GA V+ + V L P + D Sbjct: 2 RPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHD 61 Query: 90 DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH- 146 D AL A I+ +TG+ GKTTT +L AL++ T +G+ Sbjct: 62 DPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRI 121 Query: 147 -----------IGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIA 193 P A + V V+ G+ + M S R + T ++ Sbjct: 122 AGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLS 181 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253 HL +++ AKA +F+G + + + D + S Sbjct: 182 QDHLDFHRDLDDYFQAKALLFDGRSEHEVVCTDTDW-------GRKLVKPGTITVSTTGD 234 Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313 + + EQ + G S+ + G N L+ +GI+ Sbjct: 235 ASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAI 294 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 + L+ + G+ R AL Q F ++D S+ S VL EGR I Sbjct: 295 ERGLAE---VDVPGRMERVALGQDFTAVVDYSHKPGAVSA-----VLDAARAQAEGRVIV 346 Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------------VLALKDALPRS 421 VLG G L + + ++ + +LA +A+P + Sbjct: 347 VLG----CGGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAA 402 Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 E + GD+VVV K Sbjct: 403 ERGEVIERGDRREAIAEAVARASSGDIVVVAGKG 436 >gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM 16841] gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM 16841] Length = 493 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 76/474 (16%), Positives = 152/474 (32%), Gaps = 40/474 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + + I+ + + V I DSR IAP+ F + G DGH +I AV+K Sbjct: 1 MKLSKICEEIEYTLLQGSLETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVEKE 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A ++V+ + A+ +I V V+ AL ++ A K I +TG+ GKTTT Sbjct: 61 ASVIVLEKEEEAAQIPENITVLKVESARLALALMSAALFDHPARKLVTIGLTGTKGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVDVDFGIFE---LG 168 M+ L K IG+ IG L RM + E + Sbjct: 121 TYMIKKVLEMAGKKVGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAMVEAGCEYVVME 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G T + + T ++P H+ ++ E E Sbjct: 181 VSSQGLKLDRTAGILFDYGIFTNLSPDHIGP-----AEHASFEEYMECKSLLFRQCRIGI 235 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + +F + AD +E + + + Sbjct: 236 VNADDEHVDGILKGHTCEVKTFSAEREADLMASDIGFINEDGKLGMHFNVTGCMDCQAKV 295 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ ++ + + + L + +G+ +++ + +ID ++N Sbjct: 296 HIPGRFSVYNSMVTMLVCHLAGISDEAILEGLSKVQVKGRVEMLPVSKDYTLIIDYAHN- 354 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 + + + + H + G G S+ D+ EV V Sbjct: 355 ---EVSTRSVLTTLMEYHPKRLICVYGGG----GNRSKLRRYDMGEVTGEMADLCVLTCD 407 Query: 408 ---GFHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451 + + + + + + + + GD +V++ K Sbjct: 408 NPRDEEIRDINNDIKVGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGKG 461 >gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Rhizobium leguminosarum bv. viciae 3841] Length = 489 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 75/467 (16%), Positives = 136/467 (29%), Gaps = 52/467 (11%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ G ++G+S DSR + P AF A+ G DG +V+ Sbjct: 17 LEAQLEGPAGLLDISGLSSDSRKVMPGNAFVAVAGTKADG------------AGFIVDAA 64 Query: 74 MVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126 + SIPVF V + L+ A R T++A+TG+ GKT+ Sbjct: 65 GRGAAIAIASQAVDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAVTGTAGKTSVASFT 124 Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHL 172 + A IG+ + + + S Sbjct: 125 RQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAGEGVTHAAMEASSH 184 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 G + VR A T + H+ +E +AK +F+ L G+ + + D + Sbjct: 185 GLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGSPAVIFADDPW 244 Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292 K+ I + G+ + R +Q + Sbjct: 245 SAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDI----PLAG 300 Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352 + L + + A A++ G R + L Y P + Sbjct: 301 DFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDA 360 Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 + +VL + P GR I V G G + ++ V ++ + Sbjct: 361 L---ENVLGSVRPFTTGRVIVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPR 413 Query: 413 A------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + L GD ++V K Sbjct: 414 SEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKG 460 >gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 487 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR + P + F A+ G DG I A+ KGA V + + Sbjct: 15 DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R + + +S G + + IA Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AKA++ +N DD F L + + T Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +A R+ + + + +G N+L +G + L Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L GR R ++D ++ + VL + PH Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R + + G G + L ++ V ++ + ++ Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + + +S DVV++ K Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455 >gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aeromicrobium marinum DSM 15272] gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aeromicrobium marinum DSM 15272] Length = 503 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 66/475 (13%), Positives = 137/475 (28%), Gaps = 46/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++ + + + P V G+++ + P + F A+ G G + A ++GA Sbjct: 17 LVEVARQLGVRPPPVDPS--VTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERGAV 74 Query: 67 LVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 V+ + A + + +P VDD L +L + + + + Sbjct: 75 AVLTDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLHDHPTSAFTTLGVTGTQGK 134 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELG 168 T + G P+ + + + + Sbjct: 135 TTTTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVCAME 194 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S ++ +AV + HL + + AKA +F + +N D Sbjct: 195 VSSHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFT-PDHARRAVVNVD 253 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D L ++ + + AD++ + + +EV + + Sbjct: 254 DDHGRRLLDRTD---LPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVPL 310 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 + + + + A P G R FT + + + Sbjct: 311 PGRFNVSNALAVVAALAPEGHDPADLAAGIAASP--GVPGRMERVDRGQPFTAVVDYAHK 368 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A +VL+ + P GR + V+G G L + + V ++ Sbjct: 369 PDA----VTAVLTALRPVTPGRLVMVIGA----GGDRDHGKRPLMGEAAARHADLVVVTD 420 Query: 409 FHVL-----ALKD---ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + A++ A R E + GD VVV K Sbjct: 421 DNPRSERPAAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKG 475 >gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 15998] gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 11379] gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] Length = 491 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 82/483 (16%), Positives = 145/483 (30%), Gaps = 52/483 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL+ H++ P + G++ D+ + P F A+ G G + AV Sbjct: 1 MKLSDLMAGQDHHALRGTPDRTDITAGVTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60 Query: 63 KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 +GA V+V+ +L + V DV A +A +IAITG+ GK Sbjct: 61 RGAVAVLVDEQAPPLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTY----------------ACIGSYNNHIGVPLTLARMPVDVDFG 163 T+ M L ++ S + P + D Sbjct: 121 TSVSYMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRA 180 Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 L + +G + + V T + HL + +E AK +F+G Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG----- 235 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + + + L A L + ++ +AD++ + S + G+ Sbjct: 236 -LCRRAVVNADDPLGAGIRKLMAGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G N L T+ +L + + AL GR +R + Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQIPGGTSVIVD 354 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 S + VL+ I GR I V G G + ++ + Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRAEMGAIAGTHS 403 Query: 402 SHVWLSG-----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 L+ A+ D + I + D+V++ Sbjct: 404 DLCVLTSDNPRYEDPEAILDQIAEGIASTGTPFERLTDRRPAIAAALAEAGPDDIVLIAG 463 Query: 450 KSS 452 K S Sbjct: 464 KGS 466 >gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149] gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149] Length = 491 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 146/479 (30%), Gaps = 57/479 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL+ ++ + + + + DSR + F I G DGH ++ +KGA Sbjct: 3 LKQLLERLEYEVVQGSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADVAKKGAK 62 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V+V D+ A + V V+D AL A K II ITG+ GKTTT Sbjct: 63 AVIVQQDVEA---PAGMTVIRVEDTRYALALASAAYFGYPAEKLHIIGITGTKGKTTTTY 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 M+ L + IG+ IG + D + E+ Sbjct: 120 MIKSILEGVGHKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKMVEAGCDSVVMEV- 178 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226 S G + T + I + T + H+ E+ K + Sbjct: 179 -SSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKGLL-------FQQCRV 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283 + + + +FG K AD + S + +V Sbjct: 231 GIANADDRYFKDVFKNATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVAGVMDFDV 290 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N L + + + AL R FTL+ Sbjct: 291 EIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAK----VKGRIEMVKVSDEFTLMI 346 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + Y N S+++ ++ L + P ++ G S+ ++ EV Sbjct: 347 D-YAHNAMSLESLLTTLKEYHPKR------LVCLFGCGGNRSRDRRFEMGEVSGRLADLT 399 Query: 404 VWLSG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + S A+ D + I Y E + + G+V+V+ K Sbjct: 400 IITSDNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKG 458 >gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806] Length = 496 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 147/457 (32%), Gaps = 43/457 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI 83 + GIS +S + P + F + G DG +F A++ G ++ Sbjct: 24 TEITGISTNSHACQPGDLFIGLPGTRVDGGEFWRSALETGALAALISPAAAAKFPPPEDA 83 Query: 84 PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------- 134 V V D++ A +A +I +TG+ GKTTT ++ LS Sbjct: 84 CVIVVADLVTATAAIAAKFYHYPALTLKLIGVTGTNGKTTTTHLIEYFLSQAGIPTALFG 143 Query: 135 --KTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 T + P + + + E+ SH + P Sbjct: 144 TLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEIAVMEV-SSHALAQGRVQGCTFPV 202 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 V T + HL +E+ +AKA++F G +N DD++ + L A + Sbjct: 203 T-VFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGKAIINLDDAYGQRLAASLSPQQVL 261 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 T ADF + S + + +G + N+L + V Sbjct: 262 TYSVC--DARADFYTKDLHYQSTGVEGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLE 319 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 D++T I + F GR +R A +Q ++D ++ + +VL P Sbjct: 320 CGVDLETVIGQIPQFSGVPGRMERVSIAPDQDISVIVDYAHTPDSLE-----NVLKATRP 374 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 GR I V G G L ++ ++ + + Sbjct: 375 FISGRMICVFG----CGGDRDRTKRPLMGKIAAELADLAIVTSDNPRTEAPERILEDIIA 430 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P I V + GD V++ K Sbjct: 431 GIPPEITVQVISDRALAIDTAIQTAQPGDGVIIAGKG 467 >gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus oralis ATCC 35037] gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis ATCC 35037] gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus oralis ATCC 35037] gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis ATCC 35037] Length = 481 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 81/505 (16%), Positives = 155/505 (30%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ QGH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDSLFREIIDQGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154 +A TG+ GKTT+ LS T G + Sbjct: 114 LAFTGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + + E+ S + + + + V I P H+ E+ K Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + + + +N D F +LK + S ++ + + + + + Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + G+ Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G ID ++N + ++S + H G+ VLG GE + D Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + HV+L+ + + + S V + + Sbjct: 388 GLLLNQHPEIHVFLTADDPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y+++ E++P Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471 >gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] Length = 485 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 34/453 (7%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 + G+++DSR++ P E FFA+ G DG FI A+ GA V + Sbjct: 16 EAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFIAQAIAAGAVAVAGDH---LPTDE 72 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 + + VD+ AL A R ATI A+TG+ GKT+ A I Sbjct: 73 QGVALVRVDNPRRALALAASKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRQGLASASI 132 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFEL--------------GMSHLGEIRFLTHLVRPHI 186 G+ + + + S G ++ VR Sbjct: 133 GTIGLIAPQRSVYGSLTTPDPIALHRMVDEIASEDVTHLALEASSHGLDQYRLDGVRIAA 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++ H+ + +AK +F L + D + Sbjct: 193 GGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVAPSGAAVISADHDCSAEVVAAARARKLR 252 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G++ + ++ + + L+ + Q + + Sbjct: 253 LITVGRNGDPGAGIKLRSASIDGFAQRLILEHQGRMQNLLLPLVGEFQIENALVAAGLAI 312 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D ++ + +G+ G +D ++ + + L + P+ Sbjct: 313 GTGSDADSVFEALTQLEGAKGRLELVGERNGAPIFVDYAHKPDALA-----KALQALRPY 367 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426 + + I V G G + L ++ V ++ + + A R+ + Sbjct: 368 AKRQLIVVFGA----GGDRDAGKRPLMGAIAAQQADRVIVTDDNPRSENAAAIRAAILAA 423 Query: 427 SETMDGL------FLFIQSSLVDGDVVVV--KS 451 + D + ++L GD +++ K Sbjct: 424 AMGADEIGDRAEAIRAAIAALQPGDALLIAGKG 456 >gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Grimontia hollisae CIP 101886] gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Grimontia hollisae CIP 101886] Length = 495 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 67/481 (13%), Positives = 148/481 (30%), Gaps = 47/481 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 P + DLL +P + G+++D+R I P + F A++G D FI A++ Sbjct: 2 PNTSLKDLL----APWYDAIPDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPAAIE 57 Query: 63 KGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 GA V+ + + + +PV + L+ +A T+I +TG+ Sbjct: 58 AGAAAVIADDGDIHGQFDVTMQGGVPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGVTGT 117 Query: 117 VGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 GKTT +++ + + + + + Sbjct: 118 NGKTTVSQLVAQWIDLLGGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQQGA 177 Query: 164 IF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G ++ V A+ T ++ HL +E A AK +F + Sbjct: 178 THVAMEVSSHGLVQDRVKAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLFTHYGSPVS 237 Query: 223 IFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + D L + A+ + + + + + L + + Sbjct: 238 VINADDPVGMRWLGSMPEAVAVSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDSSWGEG 297 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 E +G N+L++L + L + + + + GR + + Sbjct: 298 EFTTPLVGEFNVMNLLVSLATLLALGYEKAALLASATQLQAVVGRMEVFHRPDKPMCVVD 357 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + +A L + H +G+ + G G + ++ Sbjct: 358 YAHTPDA-------LEKALHALRRHCDGKLWCIFG----CGGDRDIGKRPMMADIAEKLA 406 Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V L+ + + + + + + DV+++ K Sbjct: 407 DIVILTDDNPRSESPQAIVADMLRGMTDPDKAIILHDRAQACSYALENASEQDVILIAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Roseibium sp. TrichSKD4] gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Roseibium sp. TrichSKD4] Length = 489 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 84/452 (18%), Positives = 149/452 (32%), Gaps = 36/452 (7%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIGSL 81 + G++ DSR+I P F A+KG H DG DF AV GA V+ D A S Sbjct: 19 VSITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERDAADRLAQELSK 78 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------ 135 + ++ D+ +A ++A+TG+ GKT+ + + Sbjct: 79 DVVLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQAAGHASASLG 138 Query: 136 -TYACIGSYNNHIGVPLTLA-RMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187 ++ G+ + ++ E L S G + VR A Sbjct: 139 TIGTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHRLDGVRLVAA 198 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 T + H+ +E+ AK +F L G + + + Sbjct: 199 GFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIAVAQERGLPV 258 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +S G+ + +L K + + V+ G++ V+ IG N L+ G+ Sbjct: 259 FSVGE-AGENIRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVAAGLCICAG 317 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D AI AL+ GR + G ID ++ + + L+ + P Sbjct: 318 VAPDEAIAALAELKGAPGR-LEFAGRSQTGGTVYIDYAHKPDALE-----NALAALRPFA 371 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA-LPRS 421 G+ V+G G ++ +S V ++ ++ A L + Sbjct: 372 SGQLSVVIGA----GGDRDPGKREIMGRVSQVGADLVIVTDDNPRTEDPATIRKAVLSGA 427 Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L GD++ V K Sbjct: 428 PGALEIGDRREAIREGVRRLKSGDILCVAGKG 459 >gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 552 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 26/237 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+ +L + V+ ++ DSR F A+ G DGHD+I AV + Sbjct: 6 LFRAAEL--PLPAKISRAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVAR 63 Query: 64 GAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115 G L++ V+ +A + ++ D AL L A+ +I ITG Sbjct: 64 GCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITG 123 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDV 160 + GKTT +L ++S IG+ N G+ LA M Sbjct: 124 TNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAG 183 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + +S ++ V +A+ T ++ HL +E +AK +FE Sbjct: 184 VTHVV-MEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQH 239 >gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 556 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 26/237 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L+ +L + V+ ++ DSR F A+ G DGHD+I AV + Sbjct: 6 LFRAAEL--PLPAKISRAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVAR 63 Query: 64 GAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115 G L++ V+ +A + ++ D AL L A+ +I ITG Sbjct: 64 GCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITG 123 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDV 160 + GKTT +L ++S IG+ N G+ LA M Sbjct: 124 TNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAG 183 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + + +S ++ V +A+ T ++ HL +E +AK +FE Sbjct: 184 VTHVV-MEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQH 239 >gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 528 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 81/457 (17%), Positives = 139/457 (30%), Gaps = 40/457 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSIP 84 + G+S+DS AP E F + G G F AV GA V+ + D A + P Sbjct: 47 ILGVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGALIAHEVAPGTP 106 Query: 85 VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V DD + L+ A+TG+ GKTTT L LS+ G+ Sbjct: 107 VLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVAGT 166 Query: 143 YNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 +G V + + V+ G L S + V +A Sbjct: 167 VELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDVAG 226 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T + HL +E AKA +F E + DD + L A++ + Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKARLFT-PEHARRGVICVDDQWGAALAAQAPIEVDRVRA 285 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 G + ++ + ++ + L +V + A Sbjct: 286 YPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIRA 345 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 V A ++ G+ R + G L + P +M A+ + P Sbjct: 346 GVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKA---VRPITP 402 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIH 423 GR I V G + + + ++ + + +++A+ I Sbjct: 403 GRLIVVFGSDG----DRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDGIR 458 Query: 424 VHY--SETMDG-------LFLFIQSSLVDGDVVVVKS 451 E ++ D V+V Sbjct: 459 TVRPGLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTG 495 >gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] Length = 491 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 86/462 (18%), Positives = 149/462 (32%), Gaps = 46/462 (9%) Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 + ++ D+R + P FF + G DGHDF AV +GA +VV + Sbjct: 15 TLATPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPL-- 72 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134 L +P V V A+ + A A + + +TG+ GKTTT ++ L + Sbjct: 73 ---GLGVPELRVASVRAAMARAAANFNGDPTARLQTVGVTGTNGKTTTAFLVRGLLEAAG 129 Query: 135 KTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + +G+ +G R +D + +S Sbjct: 130 RQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHRAD 189 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 VR A+ T + HL +E+ AK +FE G +N DD + L + Sbjct: 190 AVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFE--TGPGVAVVNVDDPYGRRLAEELR 247 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G + +AD++ + S Q + + G QN+L + Sbjct: 248 ADGAAL-VTIALDHDADYRATELTTGLTGSAFTAQTPQGPIALRTPLPGRFNVQNVLGAV 306 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 V L ++ AL GR + Y P S+ + Sbjct: 307 AAVRALGVPLEQIAAALPQAGRVPGRFEPVDEGQGFAVLVD----YAHTPDSLDNVLQAA 362 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--------- 411 + E + + V G G L ++ +++ + Sbjct: 363 RGL---TERQVLTVFG----CGGDRDRTKRPLMGGIAARLADEAYVTSDNPRSEDPEQIL 415 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + HVH ++ DGDV+V+ K Sbjct: 416 RDVVEGTGTGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKG 457 >gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus infantis ATCC 700779] gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus infantis ATCC 700779] Length = 481 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 80/493 (16%), Positives = 151/493 (30%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ QGH + I DSR FF +KG + Sbjct: 1 MIKIETVLDILKKDDLFREIIDQGHYHYNFNDVTFDSICYDSRKAKDNSLFF-VKGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +F+L A++ G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEFLLSAIEHGLSWYVAEQDY-----EVDIPVIVVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT L+ G + + +F++ Sbjct: 114 LAFTGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQ 173 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + R + A + + ++ + + Sbjct: 174 AVDNGRTHLIMEVSSQAYLVK------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFY 227 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----- 285 LL S A+ I + + + ++ QS +++ Sbjct: 228 HKRLLMKNSRAVVINSDMDYFSVLKEQVENQEHDFYGSQSDNQIENSKAFSFSATGKLVG 287 Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + I N + + G+ G ID Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIATTRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + ++S + H G+ VLG GE + D +L + V Sbjct: 348 AHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLDQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + IH V + S D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++IN + E++P Sbjct: 459 CYQIINGIKEDYP 471 >gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium diphtheriae NCTC 13129] gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium diphtheriae] Length = 513 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 78/484 (16%), Positives = 142/484 (29%), Gaps = 50/484 (10%) Query: 6 TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T L + G +G ++ I +DS + F A+ G G + Sbjct: 10 TLERLTELAGGRLVGETTAGATEISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKAA 69 Query: 64 GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 A V+ + + + P+ VDDV L L+ TII +TG+ GK Sbjct: 70 AALAVLSDHEGTQILVDSGEKRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGK 129 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE- 166 TTT +L L + IG+ I P G+ Sbjct: 130 TTTSYILERGLMAAGLHVGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHV 189 Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223 + +S R A T ++ HL ++E A A Sbjct: 190 VMEVSSHALALGRVTGTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAEKS 249 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSM 281 + +D + + + ++ A I + + V +S Sbjct: 250 VVCVNDLWGKNMAERAGADAITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGAQST 309 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 +V G N ++ L + + D D I+ ++ G+ R Q F + Sbjct: 310 DVHLPLPGGFNIANTVVALALAESVGVDTDAFIRGIAD---VAVPGRMERIDRGQEFLAV 366 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ ++ V+ + GR V+G G S + + Sbjct: 367 VDYAHKPAAVAV-----VIDTVRDQVPGRIAVVVGA----GGDRDSGKRPIMGAEAARRA 417 Query: 402 SHVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV 449 V ++ +++A+ H + GD V+V Sbjct: 418 DLVIVTDDNPRSEDPAKIREAVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIV 477 Query: 450 --KS 451 K Sbjct: 478 AGKG 481 >gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] Length = 532 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 147/460 (31%), Gaps = 39/460 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V G+S DS+ I P + + A G G +F AV GA VV + A + L++ Sbjct: 38 DTTVTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAV 97 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV +DV G +L+ + +TG+ GKTTT ++ L IG Sbjct: 98 PVLVAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTGVIG 157 Query: 142 SYNNHIG------------VPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187 + IG P A + V+ + + M S T +R A Sbjct: 158 TVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAGIRFKAA 217 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 + HL + E+ AKA++F T ++ DD + + A G++ Sbjct: 218 AFLNLTQDHLDFHADFEDYFEAKAKLFT-PGYTERAVVDVDDEHGRRVVERCRANGVQVH 276 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 K AD+ ++ S V G N+ L + +L Sbjct: 277 TFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASA--GLPGDFNVANALAAIVLLA 334 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 A++ G R G L Y P ++ A+S L ++ G Sbjct: 335 VTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRPVAERG 394 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------------A 413 GR V+G G L ++ + + A Sbjct: 395 RGRLRVVVG----CGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAGA 450 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + ++ GDV++V K Sbjct: 451 DAELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKG 490 >gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 539 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 78/459 (16%), Positives = 148/459 (32%), Gaps = 45/459 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84 V+G+++ S P F AI G G F A++ GA L++ + A L +P Sbjct: 58 VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFERRLGVP 117 Query: 85 VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 V V + + L + +A+TG+ GKTTT ++ AL+S + G+ Sbjct: 118 VVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLCGT 177 Query: 143 YNNHIGVPLTL----------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 +G A + EL L R + + Sbjct: 178 VETSVGPVSFEAVRTTAEAPVVARFLAATDQYHCGAAVIELSAHALSLNRVDGIV--FDV 235 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T + HL + +E +AKA +F E + + DD + L + Sbjct: 236 AAFTNLQHDHLDYYGDMETYFAAKALLFT-PEHSRRGVVCVDDEWGRRLADHATVPVTTV 294 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++ + + + ++ + + IVS + Sbjct: 295 SALTHEAADWQVRNVTPDKSIGRTVFTLVSP-DGSPHRVAMPILGDVNVQNTAVAIVSAV 353 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + V SV + + G+ + G L+ Y P +++ + +++ Sbjct: 354 SLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWTLRSTRELTA- 412 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------------- 413 GR + V G G+ S +LA + + +W++ + + Sbjct: 413 --GRVVIVFGT---DGDRDASKREELAAIAARE-ADVLWVTDENPRSEDPQSIRDYLLRG 466 Query: 414 LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKS 451 + A P VH T D V++ Sbjct: 467 IASARPDMHDVHEVTTCRRDAVRQAILDARAADTVIITG 505 >gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. B100] gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris] Length = 495 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 80/455 (17%), Positives = 140/455 (30%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR++ P +AF AI G G F A+ GA ++ A + + Sbjct: 19 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILFEPPAPADL-PVPA 77 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L LA +I +TG+ GKT+T ++L AL+ + IG Sbjct: 78 DAIAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQLLAQALTLLGTPTGTIG 137 Query: 142 SYN---------NHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + P D + +S + V+ +A Sbjct: 138 TLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGRVDAVQFDVA 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + + +AKA++F +N DD+F L A Sbjct: 198 VFTNLTRDHLDYHGDMAQYGAAKAKLFAR-AGLRAAVVNLDDAFGRTLFAALDPALHAIG 256 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S A Q + + + + + V +G N+L G + L Sbjct: 257 VSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLLAVAGALHALD 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P GR R G ++ + + A L+ + H Sbjct: 317 IAPAQIAEVLGRLQPIHGR--MNRLGGAHGAPLVVVDYAHTPDA----LEQALTSLRSHA 370 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 + R I V G G + ++ ++ + + Sbjct: 371 QDRLICVFG----CGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVADILRGF 426 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R S D+V++ K Sbjct: 427 ARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKG 461 >gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium prausnitzii L2-6] Length = 492 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 137/472 (29%), Gaps = 45/472 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + + + I DSR AP F I G D HD+ V G Sbjct: 1 MKLEQLLEGVSYTLVQGSLELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVADG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 +VV D+ S V V+ AL ++ T+I +TG+ GKTTT Sbjct: 61 VTALVVQHDIDLSTVP-GAAVLKVESSRYALALMSGNLFGNPSRRMTMIGVTGTKGKTTT 119 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168 M+ L + Y P + R +D + Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREFLDAGCDTALME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + + I V T ++P H+ + ++ + ++ T +N D Sbjct: 180 VSSQGLMMDRVAGIHYDIGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCTTGVVNID 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E L + S A V + M+V + Sbjct: 239 DENTEALLEGHTCKLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSGK-DDMDVKVNMP 297 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L L + +L + A+ + R FT++ + + Sbjct: 298 GEFSVYNALAALTVGKVLGLPDE----AIHEGLGRCVVKGRVELVPISRKFTILLDYAHN 353 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + S+L+ + + R + V G G + L+ Sbjct: 354 EVS----TESLLTTLRAYEPHRLVVVFG----CGGNRSKLRRYGMGEICARMADFSILTE 405 Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + P + V + +GD++ Sbjct: 406 DNNRFEKVEDILADIRVGMNKGNPDAKFVEI-PDRLDALHYAVDHAQEGDLI 456 >gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2] Length = 485 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR + P + F A+ G DG I A+ KGA V + + Sbjct: 13 DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 72 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + +G Sbjct: 73 PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 132 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R + + +S G + + IA Sbjct: 133 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 192 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AKA++ +N DD F L + + T Sbjct: 193 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 251 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +A R+ + + + +G N+L +G + L Sbjct: 252 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 309 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L GR R ++D ++ + VL + PH Sbjct: 310 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 362 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R + + G G + L ++ V ++ + ++ Sbjct: 363 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 418 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + + +S DVV++ K Sbjct: 419 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 453 >gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] Length = 487 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR + P + F A+ G DG I A+ KGA V + + Sbjct: 15 DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R + + +S G + + IA Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AKA++ +N DD F L + + T Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVVNLDDDFGRRLAGEEQYSELITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +A R+ + + + +G N+L +G + L Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L GR R ++D ++ + VL + PH Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R + + G G + L ++ V ++ + ++ Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + + +S DVV++ K Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455 >gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAb1] gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] Length = 487 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR + P + F A+ G DG I A+ KGA V + + Sbjct: 15 DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V + L+ +A +I +TG+ GKT+ +++ AL + + +G Sbjct: 75 PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R + + +S G + + IA Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E A+AKA++ +N DD F L + + T Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 253 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 +A R+ + + + +G N+L +G + L Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + ++ L GR R ++D ++ + VL + PH Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 R + + G G + L ++ V ++ + ++ Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + + + +S DVV++ K Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455 >gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas gardneri ATCC 19865] gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas gardneri ATCC 19865] Length = 491 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 139/455 (30%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR++ +AF AI G G F+ A GA V+ + Sbjct: 15 DVQVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPAELPAPA 73 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139 V + L +A + ++ +TG+ GKT+T ++L AL+ + Sbjct: 74 DAIAVPGLRARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQLLAQALTLLGMPTGTLG 133 Query: 140 -----------IGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187 + + +P + + + +S + V +A Sbjct: 134 TLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + + +AKA++F +N DD F L A Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTR-AGLKAAVVNLDDDFGRTLFAALDPALRAIG 252 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S A + + + + + G+ V +G N+L G + L Sbjct: 253 VSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFNVDNLLAVAGALYALD 312 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 + L P GR R G ++ + + A L+ + H Sbjct: 313 IAPAQIAEVLGQLQPIHGR--MNRLGGAHGAPLVVVDYAHTPDA----LEQALASLRSHA 366 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 + R I V G G + ++ N ++ + + Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVADILRGF 422 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R S D+V++ K Sbjct: 423 ARPDAAIVQRDRAAAIHQAISMASASDIVLIAGKG 457 >gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LL + + V+G+ +DSR++AP +AF AI G G F+ A Sbjct: 1 MSRSMALSQLLPDV-----ALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 GA V+ + + V + L +A R ++ +TG+ G Sbjct: 56 RANGATAVLFE-PPAPDGLPVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164 KT+T ++L AL+ + + + +P + + Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQA 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + V +AV T + HL + + +AKA++F + Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L ++ L + S +AD + + + + L + Sbjct: 235 NLDDGFGRTLFASRDPVLRAIGVSS---RAHADASVSAQALQLDHNGINFALNIQGEVHP 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H + ++ D+ A A + + G+ R G ++ + Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A LS + H + R I V G G + ++ N Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + R + D+V++ K Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461 >gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus australis ATCC 700641] gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus australis ATCC 700641] Length = 481 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 77/482 (15%), Positives = 148/482 (30%), Gaps = 44/482 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 F ++LQ G N IS DSR + + FF +KG ++ +F+ A+++G Sbjct: 16 NFREILQ--DGEYHYSASGVSFNQISYDSRKVNAETLFF-VKGANFK-KEFLEQAIEQGL 71 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 V D +SIP V D+ A++ +A+ + ++A TG+ GKTT+ Sbjct: 72 QWYVAEQDF-----EVSIPAIIVTDIKQAMSLIAMEFYGHPERQLKLLAFTGTKGKTTSA 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 L + G + + +FE+ + R + Sbjct: 127 YYAYKILEQGHRPAMLSTMNTTLDGKTFFKSTLTTPESIDLFEMMAQAVANDRTHLIMEV 186 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A + + I ++ + + LL S A+ Sbjct: 187 SSQAYLVK------RVYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVV 240 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH------HGIGYHMAQNML 297 + + + + QS +VQ V + N Sbjct: 241 VNSDMDHFDILAEEVAEQDHDFYGSQSGNQVQNSKAFSFSVTGKLAGDYQTQLIGRFNQE 300 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + G+ G ID ++N + Sbjct: 301 NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS-----LK 355 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWLSGFH 410 +LS + H G VLG GE + H ++ L+ + ++ Sbjct: 356 KLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY-----ED 410 Query: 411 VLALKDALPRSI--HVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLEE 467 LA+ + + I V + + + D V++ Y+++N + EE Sbjct: 411 PLAIAEEISSFITRPVEKIADREQAIQQAMATTSKPEDTVIIAG-KGADCYQIVNGVKEE 469 Query: 468 FP 469 +P Sbjct: 470 YP 471 >gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 504 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 71/471 (15%), Positives = 139/471 (29%), Gaps = 59/471 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + ++ DSR + P FFA+ G +DGH F A ++GA VV + Sbjct: 25 AGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPV--ECAPA 82 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-------- 133 + + AL + R + + A+TG+ GKTT ++ + Sbjct: 83 RLLLAPSARRAMALAAASFCGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPVGVLG 142 Query: 134 -KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 P + + + E+ SH + + R Sbjct: 143 TISFRFPGAERPASHTTPESTAIQAVLAEMVEAGARDAVMEV-SSHALAQERVAGI-RFQ 200 Query: 186 IAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + HL +E A+ + E L GT +N D + L + Sbjct: 201 AAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL--GPG 258 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ +G + + + + + ++ + +G H +N+L G+ Sbjct: 259 PRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 318 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + L+ H GR +G +D ++ + + +++ + Sbjct: 319 GLGLPPEAVARGLAASHGAPGR---LERIDGRGLSVFVDYAHTDDALA-----RMIAALR 370 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALP 419 R + V G G L + + + + + D LP Sbjct: 371 GLSPRRLVCVFG----CGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIADVLP 426 Query: 420 RSIHV-----------------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +GD V+V K Sbjct: 427 GLDRAGKPAIGAARARAGEDGYVVEPDRRAAIALAVECAREGDAVLVAGKG 477 >gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii M21/2] gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii M21/2] Length = 492 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 71/470 (15%), Positives = 148/470 (31%), Gaps = 41/470 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L++ + + + I DSR AP F I G D H F KG Sbjct: 1 MKLEQLMEGVPFTLVQGSLGTEIADIIYDSRKAAPGLLFVCIVGTQRDSHTFAADCAAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 +V+ D+ S + V V+ A+ ++ + T+I +TG+ GKTTT Sbjct: 61 VSALVIQHDIDLSTLP-GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTT 119 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168 M+ L + Y + P + R +D + Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V + V T ++P H+ + ++ + ++ +N D Sbjct: 180 VSSQGLMMDRVAGVHYDVGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCDVGVVNID 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D L + ++G+ + AD++ +K ++ V + + + Sbjct: 239 DENTAALLE----GHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDVKV 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ L + + A+ K R FT++ + Y Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDAAIHDGLGKCVVKGRVELVPISKKFTILLD-YAH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406 N S ++ ++ L PH + V G G S+ + E+ + + Sbjct: 353 NEVSTESLLTTLRAYKPHR---LVVVFG---CGGNRSKLRRYGMGEICAKMADFSILTED 406 Query: 407 ------SGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447 + +++ + + + +GD++ Sbjct: 407 NNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLI 456 >gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium etli Kim 5] Length = 81 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSI+P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIG 79 + GA L+VV+ + ++G Sbjct: 60 MANGASLLVVSEARLPAMG 78 >gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 481 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 83/503 (16%), Positives = 160/503 (31%), Gaps = 66/503 (13%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + IS DSR++ FF +KG ++ Sbjct: 1 MIKIETIIDILKKDHNFREIIKDGHYFFHDGGLTFDKISYDSRNVTNTTLFF-VKGENFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +F+ AV+ G + +D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEFLEGAVESGLKFYISESDF-----EVGIPVLVVNDIKQAMSLIAMEFYGNPQDKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 +A TG+ GKTT+ LS + G + + +FE+ Sbjct: 114 LAFTGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFEMMAQ 173 Query: 170 -------------SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214 S ++ + + +V I+P H+ E+ K + Sbjct: 174 AVANDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRLLM 233 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 E + +N F+++K + ++ + D Q ++ + + Sbjct: 234 ENSR---AVIVNSGMDHFQIVKEQVSSIEHDFYGENSSNTIIDSQAFSFEASGKLAGKYD 290 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 L + G+ Sbjct: 291 IQLIGRFNQE-------------NALAAGLACLRLGASLTDIQKGIALTRVPGRMEVLTQ 337 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 G +D ++N + +LS + H +G+ I VLG GE + D Sbjct: 338 KNGAKVFVDYAHNGDS-----LTKLLSVVQEHQKGQTILVLGATGNKGESRRK---DFGI 389 Query: 395 VLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDV 446 +L+ + V L+ + + S V S +GD Sbjct: 390 LLNKHPEIQVILTADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDA 449 Query: 447 VVVKSSNSCGFYRLINLLLEEFP 469 V++ Y+++N + E +P Sbjct: 450 VILAG-KGADAYQIVNGIKEAYP 471 >gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024] gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024] Length = 499 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 79/462 (17%), Positives = 145/462 (31%), Gaps = 57/462 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 G S+DSR +A + F A+ + F A+ GA ++ T++ + Sbjct: 21 PFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGVANE-- 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + DV + + IIA+TG+ GKTT ++ L S ++ Sbjct: 77 ----WVRSDVRQRMGEWQERYLQHIDPVVPVRIIAVTGTNGKTTISRLV-AELISSQQQR 131 Query: 138 ACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTHLV 182 + + +P D+ L S G + + Sbjct: 132 CAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGC 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IAV + ++ HL +E A AKA +F + D+ ++ A Sbjct: 192 AIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEHAALMINAAKQNP 251 Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++ ++N D+ + + + S V +G+ +N++ L Sbjct: 252 AQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGHFNVENLVAALI 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 +KAL F P+ + G + + + A I VL Sbjct: 312 ATEQAGF----NLKALVAFVPELIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQVLK 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 + H + AV G G L +L + V L+ + Sbjct: 364 TLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419 Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + +H F+ GD+VV+ K Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461 >gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phymatum STM815] gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum STM815] Length = 512 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 81/491 (16%), Positives = 160/491 (32%), Gaps = 55/491 (11%) Query: 1 MNPLWTFH----DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD- 55 M+ L + H + +A+ P + DSR IAP + F A DG D Sbjct: 1 MSALRSSHPAQQQIAEALAWLRAHAQPGA---HLHADSRKIAPGDVFLAYA---VDGADN 54 Query: 56 --FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATII 111 FI A+++GA V+V D A ++ + V + +A A +I Sbjct: 55 RPFIASAIERGAAAVLVQADGFAGDIDPAL-MVAVPRLNELTGTIASAWYGDPSDAMRVI 113 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------- 163 +TG+ GKT+ ++ AL+++ + A IG+ + G+P L Sbjct: 114 GVTGTNGKTSCTNWISAALTALGQPCAIIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLE 171 Query: 164 --------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + +S + + + V T + HL A Sbjct: 172 QLRAAGAKAVAMEVSSHALHQGRVNGTAFSVGVFTNLTQDHLDYHGTF-AAYEAAKARLF 230 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSW 271 + +N DD + A ++ YS + + + + Sbjct: 231 SWPELKAAVINADDEAGRRMIASTNGHAKTIAYSLQPRADVQADASIVASNVRATTTGTA 290 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + + ++ + +G N+L LG + D A+ ++ GR +R Sbjct: 291 FHIASDWGNSDIEVNTLGAFNVSNLLGVLGALLASDVPFDAAVAQIAKLESVNGRMERLG 350 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + ++ + Y P +++ ++ L I+ G+ I + G G + Sbjct: 351 GRVQNDEPLVVID-YAHTPDALEQTLTALRPIADARGGKLICMFG----CGGDRDATKRP 405 Query: 392 LAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLV 442 L ++ V ++ + + + + + E L Sbjct: 406 LMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAAGMKDASKARRIEDRASAILQAVRCAA 465 Query: 443 DGDVVVV--KS 451 DVVV+ K Sbjct: 466 REDVVVLAGKG 476 >gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] Length = 503 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 79/453 (17%), Positives = 147/453 (32%), Gaps = 38/453 (8%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 DSR + +AF A G DG F+ A+ GA +V + V + G + + + Sbjct: 25 TDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEAEGVDAHGFDDARIGALPGL 84 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--------- 140 A +A A + ++A TG+ GKT+T ALS + + + Sbjct: 85 KAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGVVGTLGIGEPP 144 Query: 141 ----GSYNNHIGVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 ++ + G+ R D F + S +G + +R +A+ Sbjct: 145 LPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRLAALRIEVALF 204 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T HL ++ +AK + G +N DD+ L + Sbjct: 205 TNFTRDHLDYHGSMDAYWAAK-RVLFGWPGLKAAAVNLDDAQGAELARSLAGHVPELWTY 263 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + + R + G ++ V IG + A N+L +G + L Sbjct: 264 SLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLLAVIGGLRALGVP 323 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A++ + P GR ++ + Y P +++ A+ L ++ G Sbjct: 324 LADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKALGALRPLAAARGG 383 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---------PR 420 R + V G G + L ++ V + + A Sbjct: 384 RLLCVFG----CGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAPAAILVDVAAGFAA 439 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V E S DV+++ K Sbjct: 440 PAAVEMIEDRRAAIARAIGSAEARDVLLIAGKG 472 >gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K] gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K] Length = 496 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 72/471 (15%), Positives = 138/471 (29%), Gaps = 59/471 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + ++ DSR + P FFA+ G +DGH F A ++GA VV + Sbjct: 17 AGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPV--ECAPA 74 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-------- 133 + + AL + R + + A+TG+ GKTT ++ + Sbjct: 75 RLLLAPSARRAMALAAASFHGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPVGVLG 134 Query: 134 -KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 P + + + E+ SH + + R Sbjct: 135 TISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEV-SSHALAQERVAGI-RFQ 192 Query: 186 IAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + HL ++ A+ + E L GT +N D + L + Sbjct: 193 AAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL--GPG 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ +G + + + + + ++ + +G H +N+L G+ Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLLCAAGLAL 310 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L D ++ L+ H GR +G +D ++ + + +++ + Sbjct: 311 GLGLPPDAVVRGLAASHGAPGR---LERIDGRGLSVFVDYAHTDDALA-----RMIAALR 362 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------------------ 406 R I V G G L + + Sbjct: 363 GLSPRRLICVFG----CGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIADVLP 418 Query: 407 ----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +G L A +GD V+V K Sbjct: 419 GLDRAGKPALGAARARTGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKG 469 >gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. ADP1] gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. ADP1] Length = 499 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 68/484 (14%), Positives = 155/484 (32%), Gaps = 59/484 (12%) Query: 4 LWTFH-DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFIL 58 + + +++ AI G +DSR I + F A+ + F Sbjct: 1 MMSVSFEMISAIDAAI--EWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKT--RIFAE 56 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAIT 114 A+ +GA ++ + + DV + + +++ IIA+T Sbjct: 57 TALAQGALGIISEQPLGLERE------WVCADVRHRMGQWQKNYLQKTEPVNAARIIAVT 110 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---------RMPVDVDFGIF 165 G+ GKTT ++ L ++++ + + +P ++ + + Sbjct: 111 GTNGKTTISRLVAELL-TLQQQRCAVMGTTGNGILPHLNPSTHTTLDALQLQSALHQYVK 169 Query: 166 E------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 E L S G + + IAV + ++ HL + A AK+ +F Sbjct: 170 EGARFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFAFKSL 229 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 + D + + I ++ +++AD+ +++ + + + Sbjct: 230 KVAVINQDDAYAELMKAVAAQNPAQPQILTYSLTQSADYSVKELQYSLSGARFILVGPKG 289 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 V +G+ +N++ L ++ + G R + +Q Sbjct: 290 EYLVESPLLGHFNVENLIAALIAAEQAGFALEELV---KTVPQLIGAPGRMQVIRDQDRL 346 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D ++ + VL + H + + AV G G L +L Sbjct: 347 FVVDYAHTPDA-----LNQVLKTLRRHVQQQLWAVFG----CGGDRDRGKRPLMTQAALN 397 Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV 449 + V L+ + + + I + ++ GD+VV+ Sbjct: 398 GANPVILTSDNPRTENPKQIFADMKTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVI 457 Query: 450 --KS 451 K Sbjct: 458 AGKG 461 >gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 315 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 91/261 (34%), Gaps = 18/261 (6%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++ SR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183 +G+ L R + + +S G + + Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190 Query: 184 PHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + V+T ++ HL +E A AK + L+ + +K +S Sbjct: 191 FDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINLDDAFGRELAGIKQESRL 250 Query: 242 LGIKTIYSFGKSKNADFQLRK 262 + + S D + Sbjct: 251 ITYSQLDSSAYLYCRDAKFDD 271 >gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 496 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 71/471 (15%), Positives = 137/471 (29%), Gaps = 59/471 (12%) Query: 22 VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 + ++ DSR + P FFA+ G +DGH F A ++GA VV + Sbjct: 17 AGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIAVVAERPV--ECAPA 74 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-------- 133 + + AL + R + + A+TG+ GKTT ++ + Sbjct: 75 RLLLAPSARRAMALAAASFHGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPVGVLG 134 Query: 134 -KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 P + + + E+ SH + + R Sbjct: 135 TISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEV-SSHALAQERVAGI-RFQ 192 Query: 186 IAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A T + HL ++ A+ + E L GT +N D + L + Sbjct: 193 AAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL--GPG 250 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 ++ +G + + + + + ++ + +G H +N+L G+ Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 310 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L + + L+ H GR +G +D ++ + + +++ + Sbjct: 311 GLGLPPEAVARGLAASHGAPGR---LERIDGRGLSVFVDYAHTDDALA-----RMIAALR 362 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------------------ 406 R I V G G L + + Sbjct: 363 GLSPRRLICVFG----CGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIADVLP 418 Query: 407 ----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +G L A +GD V+V K Sbjct: 419 GLDRAGKPSLGAARARAGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKG 469 >gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces himastatinicus ATCC 53653] Length = 538 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 152/484 (31%), Gaps = 54/484 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + G+ + V GI+ DSR++ P + + A+ G G DF A GA Sbjct: 17 LAELADQLGVDASGVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAA 76 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 V+ + D + +PV VD+ G + LA ++ I ITG+ GKTTT Sbjct: 77 AVLTDPDGAERAAATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKTTTAY 136 Query: 125 ML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163 ++ A + IG+ IG + DV Sbjct: 137 LVDGGLRAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERDVHSV 196 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ SH + + V +AV ++P H+ SG+E+ AKA++F + Sbjct: 197 VMEV-SSHALVLGRVDGCV-FDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAGV 254 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D+ L++ + +F + D R G + E Sbjct: 255 INYDDEYGRRLIEE-----SEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGET 309 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 V N+ L + L A G R + + Sbjct: 310 VRAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDVGQPYLAVV 369 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + A SVL + +G+ AVLG G Sbjct: 370 DYAH----KTDAVESVLRALRKVTDGKLHAVLG----CGGDRDRLKRGPMGSAVARYADT 421 Query: 404 VWLSGFHVL-----ALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L+ + A+ A+ V E + + GD V+V Sbjct: 422 AVLTSDNPRSEDPLAILAAMLAGAAEVPSHERGDVLVEEDRENAIAAAVARAEPGDTVIV 481 Query: 450 --KS 451 K Sbjct: 482 AGKG 485 >gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 520 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 143/480 (29%), Gaps = 53/480 (11%) Query: 10 LLQAIQGHSIGIV-----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + G P V G+++ ++ + P + F A+ G G A+++G Sbjct: 21 LADQVGAVMAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERG 80 Query: 65 AGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 A V+ + VA + G + P L +LA A T+I ITG+ GKTT Sbjct: 81 AVAVLTDAAGVAQLTGGRTTPTLLHPRPRSVLGQLAAAVYAHPSERLTVIGITGTSGKTT 140 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165 T ++ L + +T IG+ I L A VD + Sbjct: 141 TTYLVESGLRAAGRTAGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVM 200 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH + + R + T ++ HL + + AKA +F+ Sbjct: 201 EV-SSHALALGRV-DGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRA 258 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + A + + + + Sbjct: 259 VVCIDDE---AGREMAARAGDAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHR 315 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 GI N+ L +++L A + +A G+ Q F L+D + Sbjct: 316 AGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRVPGRMEEIDAGQDFLALVDYA 375 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + A+ + + R V G GE + + V Sbjct: 376 HKPG------ALRAVLSSLKRPDRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLVV 425 Query: 406 LS-----GFHVLALKDAL-----PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 ++ G A++ + E + GDVV+V K Sbjct: 426 VTDDNPRGEDPAAIRREILAGVTESGCAAEVVEIGDRRAAIRHAVAWAGPGDVVLVAGKG 485 >gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris] gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris] Length = 483 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 73/457 (15%), Positives = 145/457 (31%), Gaps = 45/457 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81 G V+ I DSR + + F A G DG +I AV GA VV + + Sbjct: 17 DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPT 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 IP + + L ++A + +TG+ GKTT L A + + A Sbjct: 77 GIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136 Query: 140 IGSYNN---------HIGVPL--TLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPH 185 IG+ P L R+ G + + +S + + Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEGGIKQVCMEVSSHALSQHRVDSLEFS 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL ++ A A+ + D F+ L + + Sbjct: 197 QAIFTNLTLDHLDYHQTMQ--AYGAAKSRLFERAELQWAIINQDDDFQDLMSNVLKTHV- 253 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G +N D + +W + +EV+ + +G N L + Sbjct: 254 KKVTYGMHQNCDVKALQWNMDITGTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSLLA 313 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ ++ GR + Q + L+D ++ + +VL + Sbjct: 314 SGYNPEKVVQVMAELKAAPGRM----EIVAQSPYVLVDYAHTPDALE-----NVLITLKQ 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 +GR V G G + + ++ ++ + + Sbjct: 365 IKKGRLWVVFG----CGGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIAC 420 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P S V + + D++++ K Sbjct: 421 GIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457 >gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] Length = 510 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 154/428 (35%), Gaps = 32/428 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T DLL + + + P ++ + DSR + P F AI+G H DGH+FI A+ GA Sbjct: 4 TLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGA 63 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123 VVV+ S +PV V D AL LA A + T I ITG+ GK+TT Sbjct: 64 AAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKGKSTTT 123 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPV---------------DVDFGIF 165 ++ L++ +T I + + IG P + D + Sbjct: 124 DLTAQLLAAAGRTVGMISTVDFQIGTRRWPNDTRQSTPEAPEVQALLREMVVAGCDTAVI 183 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E L +AV+ I HL E+ + KA++F L + Sbjct: 184 EATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERHGPTW 243 Query: 226 NYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 ++ A+ +T+ + AD Q + S M + +EV Sbjct: 244 AIVNADDPHHGTFLAAVPSQTMRLRYALHAPADVQGQIVHSGPASSHMRIHSPWGEIEVN 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G A N+L L + ++ A A++ GR + Q F ++D Sbjct: 304 VPLPGRFNASNVLAALTVALTQGVPLERAAAAVAHVRAPRGRMVS--INVGQPFTVIVDY 361 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + + + + P GR IAV G E + ++ + Sbjct: 362 AHNPDSFE-----QIFTMLRPQVTGRIIAVFGSAGE----RDVSKRAIQGEIAGRMCDLL 412 Query: 405 WLSGFHVL 412 L+ Sbjct: 413 VLTDEDPR 420 >gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] Length = 497 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 146/476 (30%), Gaps = 46/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 8 LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAA 65 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +P VDD + +LA I ITG+ GKTTT Sbjct: 66 AVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 125 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 ++ L + K T + R + + +S Sbjct: 126 LVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVSS 185 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + IAV T ++P H+ SG+E+ AKA++F +++ +N DD + Sbjct: 186 HALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEY 244 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L ++ + ++ + D R + + G E + Sbjct: 245 GRRLAKEATVPVV----TYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 300 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ TL + L A A G R F + + + Sbjct: 301 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERVDEGQPFFAVVDYAH---- 356 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 A SVL + EG+ AVLG G + + L+ + Sbjct: 357 KTDAVESVLRALRKVTEGKLHAVLG----CGGDRDTTKREPMGAAVARFADTAVLTSDNP 412 Query: 412 LA---------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V E + GD V+V K Sbjct: 413 RSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 468 >gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Burkholderia rhizoxinica HKI 454] gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454] Length = 510 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 154/475 (32%), Gaps = 47/475 (9%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 ++L ++ + +DSR++ +AF A D +I A+Q+GA Sbjct: 16 AEVLAWLRARLAPHAQ------LRVDSRAVCAGDAFVAYAVDSADSRAYIADALQRGAAA 69 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125 V+V G PV V ++ +A A ++ ITG+ GKTTT Sbjct: 70 VLVQAGGEFPGGG---PVLQVPELDQLAGHIASAWYGEPSRDMLMVGITGTNGKTTTSHW 126 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFE--------------LGM 169 + ALS A IG+ G+P L+ + + + Sbjct: 127 VAGALSGSGTRCAIIGTLGT--GLPGQLSPTGFTTPDAPQVHHSLAALRAHGASAVSMEV 184 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI--EEIASAKAEIFEGLEKTGTIFLNY 227 S + + V IAV T + HL + E A A+ + GL + Sbjct: 185 SSHALHQGRVNGVAFDIAVFTNLTQDHLDYHKDLASYEAAKARLFDWPGLRAAVINRDDE 244 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 A I S +A + + + V E+ Sbjct: 245 AGRRLIGHLATRVRTISYGIASTRPRGDASLHAMAIRATATGTAFTVVSDWGHAELEVGT 304 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G N+L LG++ D A+ ++ P GR ++ ++ + Y Sbjct: 305 LGLFNVANLLAVLGVLLAADVPFDAALSQITRLEPVNGRMQQLGGRPQVDEPLVVVD-YA 363 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 P +++ + L I+ G+ + V G G + L ++ V ++ Sbjct: 364 HTPDALEKTLDALRPIATQRGGKLVCVFG----CGGERDATKRPLMGAIAERLADSVIVT 419 Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + A+ V E G L DVV++ K Sbjct: 420 SDNPRSEPPLAIIGQIVSAMREPARVRTIEDRAGAILQAVRGASAADVVLIAGKG 474 >gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium DSM 4810] gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium DSM 4810] Length = 525 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 70/481 (14%), Positives = 140/481 (29%), Gaps = 52/481 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T +L +A+ + G+S+DSRS+ P + + A+ G G +F A +GA Sbjct: 21 TAAELARALGA--AAPEEDLALRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGA 78 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTK 123 + + + + +P VDD AL V R + I +TG+ GKT+ Sbjct: 79 AMALTDPAGRERCEAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSVT 138 Query: 124 EML-----------------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 + + + + I + P + + G+ Sbjct: 139 TAITRALLELGVPAGAIGTSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAEDGVEV 198 Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + M SH + +V + T + HL +E AK +F Sbjct: 199 VSMEVSSHALVLHRADEVV-YDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFT-PAHARRG 256 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + DD + L ++ G + + + ++ +++ Sbjct: 257 VVCVDDDWGRRLAREAQIPVTTYATRPGIDADHRAREHRADGYGSIVEVDGPDGTRTLHA 316 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G Y L T + + P + ++ Sbjct: 317 ALPGRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRMEPVAHTPIRGVVDYSHTP 376 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ +L+ + G GR + V+G G L ++ Sbjct: 377 DALEQA---------LLTLRAVPGTGRLLVVMGA----GGDRDRAKRPLMGEVAARYADV 423 Query: 404 VWLSG-----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V ++ A++ + I VH + D ++V K Sbjct: 424 VLVTDDNPRTEDPAAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGK 483 Query: 451 S 451 Sbjct: 484 G 484 >gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] Length = 504 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 80/451 (17%), Positives = 134/451 (29%), Gaps = 40/451 (8%) Query: 33 DSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR I FFA +G DG D+I A+ GA VV + ++P GV Sbjct: 27 DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEGFDWNPEWNVPHLGVMG 86 Query: 91 VLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------S 142 + +A A +IA+TG+ GKT+ + L +LS++ K A IG Sbjct: 87 LKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLGVTVF 146 Query: 143 YNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVI 189 N GVP D + S +G + + + + + Sbjct: 147 VNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPIDVGLF 206 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T HL + A LN DD L T Y+ Sbjct: 207 TNFTRDHLDYHHDM-ASYKAAKRKLFDWPGLKHAVLNLDDPMGRELATALKTRISLTGYT 265 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + A L+ S +E + S N LG++ +L A Sbjct: 266 LENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRT-RLIGRFNASNVLGVLGVLLAA 324 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 A+ R + + ++ + + P +M+ ++ L ++ G Sbjct: 325 GIHWDDAVRTLGDLLPPAGRMQQMGGKNAPLVVID-FAHTPDAMEKGLATLRHVANERNG 383 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIHV 424 + V G G +S V ++ + + + Sbjct: 384 KLWCVFG----CGGDRDQGKRPQMGSVSET-ADFVIVTSDNPRSEDPKEIMKQIISGMEK 438 Query: 425 H--YSETMDGLFLFIQSSLVDGDVVVV--KS 451 E L DV+ + K Sbjct: 439 EPQVYEDRAMAILQAVRQASQNDVIFLAGKG 469 >gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Faecalibacterium prausnitzii A2-165] gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Faecalibacterium prausnitzii A2-165] Length = 492 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 79/471 (16%), Positives = 149/471 (31%), Gaps = 43/471 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + V I DSR AP AF I G D H+F KG Sbjct: 1 MKLEQLLEGVPFTLVQGSLDTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFAADCAAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122 ++V+ D+ S + V V+ A+ ++ T+I +TG+ GKTTT Sbjct: 61 VSVLVIQHDIDLSAMP-GVTVVKVESSRYAMALMSGNLFGNPSRQMTMIGVTGTKGKTTT 119 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168 M+ L + Y P + R +D + + Sbjct: 120 THMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQFLDAGCDVALME 179 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V I V T ++P H+ + ++ + + +N D Sbjct: 180 VSSQGLMMDRVAGVHYDIGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFRRCDVGVVNID 238 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D E L + ++G+S+ AD++ + ++ V + + + Sbjct: 239 DENTEALLE----GHTCKLVTYGRSEKADYRAEGCELLRTHDFLGVAFHVSGRDNMDVRV 294 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ L + + A+ K R FT++ + Y Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDAAIHEGLGKCVVKGRVELVPISKKFTILLD-YAH 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 N S ++ ++ L PH + V G G S+ + E + L+ Sbjct: 353 NEVSTESLLTTLRAYHPHR---LVVVFG---CGGNRSKLRRYGMGETCAKMA-DFSILTE 405 Query: 409 FH--VLALKDALPR----------SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++D L + +GD++ Sbjct: 406 DNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLI 456 >gi|317489847|ref|ZP_07948342.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA] gi|316911052|gb|EFV32666.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA] Length = 173 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 6/132 (4%) Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 FT+++++YNANP SM+A+++ + G+ +AVLGDM E+G + + H + E + Sbjct: 44 FTVVNDAYNANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFAAT 101 Query: 399 YNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454 + + G L + DA R+ + + ++ +F + + + GD V+VK+S+ Sbjct: 102 LPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHF 161 Query: 455 CGFYRLINLLLE 466 G R++ L+ Sbjct: 162 MGLTRVVEGLVN 173 >gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M23] gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23] gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 491 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 82/456 (17%), Positives = 146/456 (32%), Gaps = 41/456 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++G+ +DSR + P +AF A+ G G FI A +GA ++ + Sbjct: 15 DVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS--------- 132 V + L +A T++ +TG+ GKT+T ++L A Sbjct: 75 A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 133 Query: 133 ------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + + + L ++ D + + +S + V + Sbjct: 134 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVHYDV 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL +E AKA +F + + D LL ++ + + Sbjct: 193 AVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFGLRLLHGLANGVR-RV 251 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S +AD + + ++ + V +G N+L G++ L Sbjct: 252 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLTVAGVLYAL 311 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + LS P GR R G ++ + + A VLS +S H Sbjct: 312 DYALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSH 365 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 GR I V G G V++ N V ++ + + Sbjct: 366 VCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADILAG 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V GDVV++ K Sbjct: 422 FVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKG 457 >gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia K279a] gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Stenotrophomonas maltophilia K279a] Length = 502 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 73/480 (15%), Positives = 140/480 (29%), Gaps = 47/480 (9%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+P LL A+ GH + G+ +DSR++ P AF AI G G F+ Sbjct: 1 MSPSMLLSQLLPDVALAGH------DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 A GA +++ A + + + V + + +A ++ +TG+ Sbjct: 55 QARAAGASVILFEPPAPAELPAPAD-AIAVPGLRARMGAMADQFHGAPSRSMAMVGVTGT 113 Query: 117 VGKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPV-------DVDF 162 GKT+T ++L A + I G L D Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S + V +AV T + HL + +AKA +F Sbjct: 174 RAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPGLKAA 233 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + D +L + + S G D +R + + +L Sbjct: 234 VINLDDAFGGQLFAGLPAGVQPIGLSSRG---ATDASVRAEALQLDGRGIAFELVIDGQR 290 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + ++ A + + RG+ R G T++ Sbjct: 291 AAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVV 350 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + A L + H +G V G G + ++ + Sbjct: 351 VDYAHTPDA----LEQALDSLHGHLQGTLFCVFG----CGGERDTGKRPQMATIAERLAN 402 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + + V + GD++++ K Sbjct: 403 KVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKG 462 >gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] Length = 495 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 82/456 (17%), Positives = 146/456 (32%), Gaps = 41/456 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++G+ +DSR + P +AF A+ G G FI A +GA ++ + Sbjct: 19 DVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS--------- 132 V + L +A T++ +TG+ GKT+T ++L A Sbjct: 79 A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 137 Query: 133 ------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + + + L ++ D + + +S + V + Sbjct: 138 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVHYDV 196 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL +E AKA +F + + D LL ++ + + Sbjct: 197 AVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFGLRLLHGLANGVR-RV 255 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S +AD + + ++ + V +G N+L G++ L Sbjct: 256 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLTVAGVLYAL 315 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + LS P GR R G ++ + + A VLS +S H Sbjct: 316 DYALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSH 369 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 GR I V G G V++ N V ++ + + Sbjct: 370 VCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADILAG 425 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V GDVV++ K Sbjct: 426 FVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKG 461 >gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] Length = 506 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 85/476 (17%), Positives = 146/476 (30%), Gaps = 46/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 17 LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAA 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +P VDD + +LA I ITG+ GKTTT Sbjct: 75 AVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 ++ L + K T + R + + +S Sbjct: 135 LVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVSS 194 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + IAV T ++P H+ SG+E+ AKA++F +++ +N DD + Sbjct: 195 HALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEY 253 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L ++ + ++ + D R + + G E + Sbjct: 254 GRRLAKEATVPVV----TYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ TL + L A A G R F + + + Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERVDEGQPFFAVVDYAH---- 365 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411 A SVL + EG+ AVLG G + + L+ + Sbjct: 366 KTDAVESVLRALRKVTEGKLHAVLG----CGGDRDTTKREPMGAAVARFADTAVLTSDNP 421 Query: 412 LA---------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V E + GD V+V K Sbjct: 422 RSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 477 >gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus ATCC BAA-974] gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus ATCC BAA-974] Length = 522 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 76/461 (16%), Positives = 142/461 (30%), Gaps = 45/461 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85 V+G++ +++ P + F A+ G G + A +GA V+ + A + + I V Sbjct: 37 VSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVGEIAV 96 Query: 86 FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 +L L+ T++ +TG+ GKTTT +L + + IG+ Sbjct: 97 LTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMTGVIGTV 156 Query: 144 NNHIG------------VPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVI 189 IG P T A + V + G+ + M S R A Sbjct: 157 ETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTRFAAAGF 216 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----GTIFLNYDDSFFELLKAKSHALGI 244 T ++ HL + +E AKA++FE + + + G Sbjct: 217 TNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVAREGAGRGA 276 Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + S AD+ + ++ + V + ++ L + Sbjct: 277 QAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAANALLALG 336 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 A ++ + L + G+ R Q F ++D ++ + VL + Sbjct: 337 LAEAAGLEVGPELLRGWASISVPGRLERVDAGQDFLAVVDYAHKPEA-----LVKVLHAL 391 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 H EGR V+G G + V ++ + + Sbjct: 392 REHTEGRIAVVVGA----GGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQV 447 Query: 415 KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 S GD V+V K Sbjct: 448 LAGAQESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKG 488 >gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium tuberculostearicum SK141] gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium tuberculostearicum SK141] Length = 511 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 152/482 (31%), Gaps = 52/482 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L Q G IG V+ +DS + F A+ G G F A A Sbjct: 4 SLDTLAQLSGGRVIG-DASVEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKA 59 Query: 66 GLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 G V+ + + + + P+ V+D+ L ++ T+I +TG+ GKTT Sbjct: 60 GAVLTDAAGLDLLTKDQETRPIVVVEDIRAVLGPISAEIYGHPTRDLTVIGVTGTSGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFE 166 T +L L + IG+ + ARM + + Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVV- 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S R + T ++ HL +E+ AKA++F G + L Sbjct: 179 MEVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAERAVLC 238 Query: 227 YDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD + E ++ AKS + T+ + G + + + + + + G Sbjct: 239 IDDEWGERMRGVAKSAGHPVTTVATQGAAATISARQTATEA-TGAQEVALNYDGADFTFR 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N + LG+ + + D + + F + + Sbjct: 298 LPLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAVPGR----MERIDRGQDFVAVVD 353 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y PA++ A + L GR V+G G S + + Sbjct: 354 -YAHKPAAIAAVLDTLRGQLEGTTGRVGIVVGA----GGDRDSSKRPIMGAAAASRADLT 408 Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 ++ + + +DA P + + + GD V+V Sbjct: 409 VVTDDNPRSEDPATIRAAVVEGARDAAPEG-DIREVGSRARAIDEVVDWAEPGDAVIVVG 467 Query: 450 KS 451 K Sbjct: 468 KG 469 >gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 144 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 >gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 + +++DSR++ P + F A+ G DG I A+++GA V + + Sbjct: 11 HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70 Query: 80 SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 +P+ V + L+ +A ++ +TG+ GKT+ +++ AL ++ + Sbjct: 71 ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130 >gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 572 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 94/476 (19%), Positives = 150/476 (31%), Gaps = 46/476 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + G G V GI+ DSR++ P + + A+ G + G DF A GA Sbjct: 66 LGELADRLGVEAAGT---GEVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAA 122 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 V+ + + +PV +D + +LA R + + ITG+ GKTTT Sbjct: 123 AVLTDPAGAERAAATGLPVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTAY 182 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++ L + + IG+ IG + P D M G + Sbjct: 183 LVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242 Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 +AV ++P H+ SG+E+ AKA++F + D+ Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNFDDEY 302 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 LL + SF + D G E + Sbjct: 303 GRRLLTE-----SGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 357 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+ TL + L A G R + + + + Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDAGQPYLAVVDYAH--- 414 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408 A SVL + EGR VLG G+ + + + + V S Sbjct: 415 -KTDAVESVLRSLRKVTEGRVHIVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSDNP 470 Query: 409 --FHVLALKDA-LPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVV--KS 451 LA+ A L + V E D L + GD V+V K Sbjct: 471 RSEDPLAILAAMLSGAAEVPVHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKG 526 >gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum DSM 43021] gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum DSM 43021] Length = 514 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 91/481 (18%), Positives = 157/481 (32%), Gaps = 47/481 (9%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PL LL A G P V+GI+IDSR + + + A+ G G F A+ Sbjct: 10 PLSGLASLLGAPSGT--SRAPLAAVSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALA 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 GA ++ + + A+ + +PV V D L +++ R +I +TG+ GK+ Sbjct: 68 AGASAILTDEEGRAAAVATGLPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKS 127 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------MPVDVDFGIFE 166 TT +L L + IG H G + + + Sbjct: 128 TTTFLLEAGLRAAGHKAGLIGGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAA 187 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S V +A+ T ++ HL +++ + KA +F + Sbjct: 188 MEVSSHALALGRVDAVFYDVALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAGVVNI 247 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D ELL + T +S + AD++ + ++ S V G E Sbjct: 248 DDAHGRELL---GLSKIPMTTFSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATV 304 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 N+ LG + L A++ G R F I + Y Sbjct: 305 --ALPGPFNVANALGAIVSLVEAGVPLRAAVAGVGTLAGVPGRMERVPGGEDFQAIVD-Y 361 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + P ++++ + + GR VLG G + + L Sbjct: 362 SHKPGAVESVLRS---LREVTTGRLTVVLG----CGGDRDRGKRPMMGEAAARLADVAIL 414 Query: 407 SGFHVLA------LKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 + + + L + + + HV S GDVVVV K Sbjct: 415 TSDNPRSEDPLRILAEMMNGALGVSHDERAHVIIEPDRAAAIDLAISRAGFGDVVVVAGK 474 Query: 451 S 451 Sbjct: 475 G 475 >gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402] Length = 303 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 80/241 (33%), Gaps = 32/241 (13%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-----------APQEAFFAIKGP 49 M + + ++AI+ + + +N + DSR + AFFA+ G Sbjct: 22 MEYTKSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGI 81 Query: 50 HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109 H DG FI A++ GA + D+ + I V+DV ++K++ T Sbjct: 82 HTDGKKFINSAIENGAVCIFYEGDL-NNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 140 Query: 110 --IIAITGSVGKTTTKEMLTI---ALSSIKKTYACIGSYNNHIGVPLTLARMPV------ 158 +I +TG+ GK++T + ++ + + +P + Sbjct: 141 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNIVQ 200 Query: 159 ---------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + + E L V V + HL IE+ Sbjct: 201 LRLAQMRDSGCGYAVVEASSHGLSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 260 Query: 210 K 210 K Sbjct: 261 K 261 >gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC BAA-613] gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC BAA-613] Length = 511 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 136/477 (28%), Gaps = 48/477 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + + V + DSR P F + G D H F+ ++ G Sbjct: 3 LRTWLNELDYELVRGSLDVEVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVR 62 Query: 67 LVVVNTDMVASIGSLS--------IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGS 116 ++V D+ + + + + + +L L A SK I +TG+ Sbjct: 63 VLVTERDIEEELAASGLAEHEMGRVTILKTAEARRSLALLSAARFGYPASKMITIGVTGT 122 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYN---------NHIGVP-----LTLARMPVDVDF 162 GKTTT M+ L + K IG+ P + Sbjct: 123 KGKTTTTHMIKAILEAAGKKVGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGC 182 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S G + + T I+P H+ + A L Sbjct: 183 QYMIMEVSSQGIKMHRVDGLAFDYGIFTNISPDHIGP-DEHADFAEYLCCKSRLLSMCRI 241 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--- 279 +N +D F+ + + ADF+ + S ++ + Sbjct: 242 GLVNLNDGHFKEIVKDASCRLYTYCVKEDGETKADFEASNVRYVSRPDFVGTEFDVTGNL 301 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 M+V G N L L + S L D + AL R Sbjct: 302 DMDVRLGIPGLFNVDNALAALCVCSFLGLPKDRIVHALEHIR----VNGRMEIVYTSSRC 357 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T++ + + + S+L+ + + R + V G + + ++ L+ Sbjct: 358 TVLVDYAHNAVS----MESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRLADL 413 Query: 400 NISHVWL--------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447 +I + ++ ++ + GD++ Sbjct: 414 SI---ITADNSRYEKVEDIMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMI 467 >gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium 104] gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium subsp. avium ATCC 25291] gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium 104] Length = 520 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 144/480 (30%), Gaps = 53/480 (11%) Query: 10 LLQAIQGHSIGIV-----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + G P V G+++ ++ + P + F A+ G G A+++G Sbjct: 21 LADQVGAVMAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERG 80 Query: 65 AGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 A V+ + VA + G + P L +LA A T+I ITG+ GKTT Sbjct: 81 AVAVLTDAAGVAQLTGGRTTPTLLHPRPRSVLGELAAAVYAHPSERLTVIGITGTSGKTT 140 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165 T ++ L + +T IG+ I L A VD + Sbjct: 141 TTYLVESGLRAAGRTAGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVM 200 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH + + R + T ++ HL + + AKA +F+ Sbjct: 201 EV-SSHALALGRV-DGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRA 258 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + A + + + + Sbjct: 259 VVCIDDE---AGREMAARAGDAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHR 315 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 GI N+ L +++L A + +A G+ Q F L+D + Sbjct: 316 AGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRVPGRMEEIDAGQDFLALVDYA 375 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + A+ + + R V G GE + + V Sbjct: 376 HKPG------ALRAVLSSLKRPDRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLVV 425 Query: 406 LS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ G A++ + + V + GDVV+V K Sbjct: 426 VTDDNPRGEDPAAIRREILAGATESGCAAEVIEIGDRRAAIRHAVAWAGPGDVVLVAGKG 485 >gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia R551-3] gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas maltophilia R551-3] Length = 502 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 144/480 (30%), Gaps = 47/480 (9%) Query: 1 MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 M+P LL A+ GH + G+ +DSR++ P AF AI G G F+ Sbjct: 1 MSPSMLLSQLLPDVALAGH------DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 A GAG ++ + + V + + +A ++ +TG+ Sbjct: 55 QARAAGAGAILF-EPPAPAELPAPVDAIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGT 113 Query: 117 VGKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPV-------DVDF 162 GKT+T ++L A + I G L D Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + +S + V +AV T + HL + A Sbjct: 174 RAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDM-ASYGAAKARLFHRPGLKA 232 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD+F L A A S + +A + + E+ + G+ Sbjct: 233 AVINLDDAFGRQLFAGLPAGVQPIGLSSRGATDAIVRAEALQLDGRGIAFELAIDGQRAA 292 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 V +G N+L G + + + LS P GR R G T++ Sbjct: 293 VQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPIRGRMN--RLGGEDGLPTVV 350 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + + A L + H +G V G G + ++ + Sbjct: 351 VDYAHTPDA----LEQALDSLHGHLQGTLFCVFG----CGGERDTGKRPQMAAIAERLAN 402 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + + V + GD++++ K Sbjct: 403 QVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRANAGDIILIAGKG 462 >gi|229184422|ref|ZP_04311629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|228599218|gb|EEK56831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] Length = 124 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 5 WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62 L + I G ++G+ IDS++I F I DGH+++ ++ Sbjct: 10 MNLKKLEEVINGGGLHESFHHLEIHGVRIDSKNIKEGNVFVPII--RVKDGHEYVKESMD 67 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119 GA + +P+ VDD L AL +LA R +I ITGS+ K Sbjct: 68 NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSMAK 122 >gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila str. Corby] gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila str. Corby] gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] Length = 483 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 144/457 (31%), Gaps = 45/457 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81 G V+ I DSR + + F A G DG +I AV GA VV + + Sbjct: 17 DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPT 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +IP + + L ++A + +TG+ GKTT L A + + A Sbjct: 77 AIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136 Query: 140 IGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185 IG+ P L + + + +S + + Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHRVDSLEFS 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL ++ A A+ + D F+ L + + Sbjct: 197 QAIFTNLTLDHLDYHQTMQ--AYGAAKSRLFERAELQWAIINQDDDFQDLMSNVLKTHV- 253 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G +N D + +W + +EV+ + +G N L + Sbjct: 254 KKVTYGMHQNCDVKALQWNMDITGTEIEVKSPWGHQLLKIKALGKFNIYNSLAVYSSLLA 313 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ ++ GR + Q + L+D ++ + +VL + Sbjct: 314 SGHNPEKVVQVMAELKAAPGRM----EIVAQSPYVLVDYAHTPDALE-----NVLITLKQ 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 +GR V G G + + ++ ++ + + Sbjct: 365 IKKGRLWVVFG----CGGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIAC 420 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P S V + + D++++ K Sbjct: 421 GIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457 >gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 7942] gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 7942] Length = 497 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 140/493 (28%), Gaps = 72/493 (14%) Query: 5 WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59 LL + + + G+ DSR P + F + G DG F Sbjct: 1 MNLRSLLASTPTQVLQPQHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAI 60 Query: 60 ------------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106 A+ + + + D + +A A + Sbjct: 61 AAGAVAVIVTPTALAQ-----------RPLSANPEACLILSDQMPVTAGAIAAAFYNQPA 109 Query: 107 -KATIIAITGSVGKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTLA-- 154 +I +TG+ GKTTT ++ L++ S P Sbjct: 110 QTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQ 169 Query: 155 -----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + + E+ SH + + +AV T + HL +E +A Sbjct: 170 AQLATAVDAGCQAAVMEV-SSHALDQGRVNGCG-FDVAVFTNLTQDHLDYHGTMEAYFAA 227 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KA +F G +N DD++ + L ++ ADF + Sbjct: 228 KARLFAPPYLRGKAVINADDAYGQRLI---TMTPPGQCLTYSVVGTADFCTTDLQYGPTG 284 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++ + +G N+L + L ++T + + F GR Sbjct: 285 VEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGR--M 342 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R T+I + Y P S++ + P +G I V G G Sbjct: 343 ERVVGQDSDPTVIVD-YAHTPDSLENLLKAA---RPFIQGELICVFG----CGGDRDRTK 394 Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440 L ++ V ++ + + +P + V S Sbjct: 395 RPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILS 454 Query: 441 LVDGDVVVV--KS 451 GD V++ K Sbjct: 455 AQPGDGVLLAGKG 467 >gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 6301] gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase [Synechococcus elongatus PCC 6301] Length = 502 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 140/493 (28%), Gaps = 72/493 (14%) Query: 5 WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59 LL + + + G+ DSR P + F + G DG F Sbjct: 6 MNLRSLLASTPTQVLQPQHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAI 65 Query: 60 ------------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106 A+ + + + D + +A A + Sbjct: 66 AAGAVAVIVTPTALAQ-----------RPLSANPEACLILSDQMPVTAGAIAAAFYNQPA 114 Query: 107 -KATIIAITGSVGKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTLA-- 154 +I +TG+ GKTTT ++ L++ S P Sbjct: 115 QTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQ 174 Query: 155 -----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 + + E+ SH + + +AV T + HL +E +A Sbjct: 175 AQLATAVDAGCQAAVMEV-SSHALDQGRVNGCG-FDVAVFTNLTQDHLDYHGTMEAYFAA 232 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 KA +F G +N DD++ + L ++ ADF + Sbjct: 233 KARLFAPPYLRGKAVINADDAYGQRLI---TMTPPGQCLTYSVVGTADFCTTDLQYGPTG 289 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 ++ + +G N+L + L ++T + + F GR Sbjct: 290 VEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGR--M 347 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R T+I + Y P S++ + P +G I V G G Sbjct: 348 ERVVGQDSDPTVIVD-YAHTPDSLENLLKAA---RPFIQGELICVFG----CGGDRDRTK 399 Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440 L ++ V ++ + + +P + V S Sbjct: 400 RPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILS 459 Query: 441 LVDGDVVVV--KS 451 GD V++ K Sbjct: 460 AQPGDGVLLAGKG 472 >gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Butyrivibrio crossotus DSM 2876] gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Butyrivibrio crossotus DSM 2876] Length = 490 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 155/472 (32%), Gaps = 36/472 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + + + DSR + F + G DGH +I KG Sbjct: 1 MKLSKLLEKLEYEVLNGNVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYISDVAGKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 +VV D+ + I + D AL ++ A K I ITG+ GKTTT Sbjct: 61 VLAIVVQKDIEVTEELKDITLIKTADTRYALALMSAAFFDYPAKKLKTIGITGTKGKTTT 120 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168 M+ L IG+ IG + V+ + Sbjct: 121 TFMIRDILEKCNIKAGLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQMVEAGCSCVVME 180 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S + T + I V T I P H+ ++ E E + ++ Sbjct: 181 VSSQALMLNRTAGILFDIGVFTNIEPDHIGP-----NEHASFEEYMECKSRLFKQCVHGI 235 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + K T+ ++G AD + + E + ++ + Sbjct: 236 GNADSEYFDKIMEGHTCTLETYGIKNKADLKAENIRYIHEGGNITTSYNTTGTRELNIKL 295 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 ++ +L +++ L + G+ ++ F +ID ++NA Sbjct: 296 TLPGEFSVYNSLCAIAVSEHFNVDDKLLLDALYNTRVAGRVEPVKVSDDFIVMIDYAHNA 355 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGD-----MCEMGELSQSFHI-DLAEVLSLYNIS 402 S+++ +S L + +P+ G+ EMGE+S + + + Sbjct: 356 --MSLESLLSTLREYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMADLTIITSDNPRDED 413 Query: 403 HVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451 V + + ++ + ++ + E + GD++V+ K Sbjct: 414 PVLI----MQDIETGIKKTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKG 461 >gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 492 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 82/483 (16%), Positives = 146/483 (30%), Gaps = 51/483 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF-VN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 +LL H + P+ + G + D + P F A+ G G + A+ Sbjct: 1 MKLSELLAGHDHHILQGDPETTWITAGTTFDVGRVTPGSLFIAVPGHGEGGPGSVGPALA 60 Query: 63 KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 +GA V+V+ + + + V D A +A + ++AITG+ GK Sbjct: 61 RGAAAVLVDGGAPDLPMSAAGVCAVSVPDTRTAAAVVASRYFGAPGRQMDMVAITGTNGK 120 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG------VPLTLARMPVDVDFGIFELGMSHLG 173 T+ M+ L + + +P ++ P D M G Sbjct: 121 TSVSYMVESVLRLSEGATVGVIGTAGSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRG 180 Query: 174 EIR------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + V T + HL + +E AK +F+G Sbjct: 181 AGSVVLEATSMALLTHRVDCAFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 +N DD ++A ++ AD++ + + + + G+ Sbjct: 239 RAVVNADDPVGAGIQAMMPGAVTTYGL---DTEAADYRATELTVDASGTRFVLHHDGRKY 295 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G + N L T+ L D+ + AL P GR +R+R Sbjct: 296 PAAIPVPGRYSVANALATVAACHALGHDLGGLVAALDRMPPVPGRFERFRTPRGTSVIVD 355 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 S + VL+ I GR I V G G + ++ + Sbjct: 356 YA-------HSPDSLDKVLTTIRGFAPGRVITVFG----CGGDRDTTKRAEMGEIAGTHS 404 Query: 402 SHVWLSG-----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 L+ A+ D + F S+ D+V++ Sbjct: 405 DLCILTSDNPRNEDPEAILDQITPGLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAG 464 Query: 450 KSS 452 K S Sbjct: 465 KGS 467 >gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] Length = 489 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 150/473 (31%), Gaps = 39/473 (8%) Query: 5 WTFHDLLQAIQ-GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L+ A+ G V G++ DSR + P FFA+ G DG F+ A Sbjct: 1 MNLSALISALPPGTLSAPSSANLDFSVTGLTADSRVVEPSNLFFALAGVKTDGARFVQEA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + K G + A I + + V DD AL ++A A + A+TG+ GKT Sbjct: 61 ISK--GAAAIVAASGAGISTDGVAVLRSDDPRLALARMAAAFFGPQPRVMAAVTGTAGKT 118 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166 + L + + A +G+ + + Sbjct: 119 SVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELASEGVTHAA 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + V +A T + H+ +E+ +AK +F+ L G + Sbjct: 179 MEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLLPKGAPAVI 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + D + + + + G+ L++ + + EV L G+ E+ Sbjct: 239 FADDPWSEQAVEVAERAGARVLTVGRKGGF-LSLKRVEHLRHKQIAEVHLDGRIFEIHVP 297 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 G N L+ G+ D A+ AL GR + + +D ++ Sbjct: 298 LAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPA-YVDYAH 356 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 +VL + P GR I V G G + ++ V + Sbjct: 357 KPEAME-----NVLDAVRPFTTGRIIMVFG----CGGDRDRGKRPIMGSIATKLADVVIV 407 Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + L + L GD ++V K Sbjct: 408 TDDNPRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKG 460 >gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] Length = 505 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 95/491 (19%), Positives = 164/491 (33%), Gaps = 63/491 (12%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDG 53 M T + + P V ++ DSR + P F A++G G Sbjct: 1 MMAANTVQTVAT-LGRLWPAGAPALPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHG 59 Query: 54 HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TII 111 A ++GA ++ + + +LSIPV + + AL + A A ++ Sbjct: 60 LAHARAAAEQGAVAILWDE--AEAAPALSIPVLHLPGLRVALPAICDALWGAWPADYPVV 117 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGS------------YNNHIGVPLTLARMPVD 159 A+TG+ GKT+ ++ AL + +G+ + GV + Sbjct: 118 AVTGTDGKTSVSQLFAGALEQLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHL 177 Query: 160 VDFGIFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 G L S G + + +AV+T + HL + A AKA + Sbjct: 178 TADGCRALSIEASSHGLEQGRMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARL-FAW 236 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 T LN DD+ + L ++ A I T + G +AD R+ + S+ +++ Sbjct: 237 PGLETAVLNADDALGQRLIRETTAEHILTYSAVG--ASADLVAREVEAGSDGIRFTLEVA 294 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G++ V G N+L TL + L A+ A+S GR +R+ Sbjct: 295 GEAWPVQAALFGLFQVGNLLATLAALRALGHSWPAAVDAVSRLRGVPGRMERFELPSGAL 354 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + A A L + PH GR IAV G G + Sbjct: 355 LVVDYAHTEQALAA-------ALDALRPHTAGRLIAVFG----CGGDRDVTKRPAMGRAA 403 Query: 398 LYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFI----------QSSLV 442 V ++ A++ A+ + + Sbjct: 404 SARADQVIVTDDNPRSEDPAAIRAAVLAGC------DRPEACRELGDREAAVRAAVAEAG 457 Query: 443 DGDVVVV--KS 451 GDV+++ K Sbjct: 458 PGDVILLAGKG 468 >gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 495 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 145/478 (30%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LL + + V G+ +DSR +AP +AF AI G G F+ A Sbjct: 1 MSRSMALSQLLPDV-----ALPHDVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 GAG V+ + + V + L +A R ++ +TG+ G Sbjct: 56 HANGAGAVLFE-PPAPNGMPVPADAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164 KT+T ++L A++ + + + +P + + Sbjct: 115 KTSTVQLLAQAMTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQA 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + V +AV T + HL + + +AKA++F + Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L + AL + S AD + + + + L + Sbjct: 235 NLDDAFGRTLFASLDPALRAIGVSS---RAQADASVSAQALQLDHNGINFALNIQGEVHP 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H + ++ ++ A A + + G+ R G ++ + Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A LS + H + R I V G G + V++ N Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAVIAELNADVA 403 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + R D+V++ K Sbjct: 404 IVTDDNPRSEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGMASASDIVLIAGKG 461 >gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis C231] gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis 1002] gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis I19] Length = 503 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 143/481 (29%), Gaps = 53/481 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L G G + IS+DS+ + F A+ G G + A Sbjct: 10 TLGFLAALTGGELHG-DKDIVIEEISLDSQELPQGGLFAALPGTRSHGAKYAQETQ---A 65 Query: 66 GLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 ++ + + P V++V G L ++ R II ITG+ GKTT Sbjct: 66 AAILTDAAGAEILRESGDTRPRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKTT 125 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIF 165 T ML L + K+ IG+ I + V + Sbjct: 126 TSYMLEAGLINAGKSVGLIGTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVVM 185 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+ SH + + A T ++ HL +EE AKA +F+ T Sbjct: 186 EV-SSHALSLGRV-SATHFAAAGFTNLSQDHLDFHPTMEEYFEAKALLFDPASSVHTKKT 243 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284 L+ + S ADF + + V + + V Sbjct: 244 VICIDEPWGLQMLERSGAEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVD 303 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N + +G+ S + D+D + L G+ R Q F ++D Sbjct: 304 LPIPGAFNVANAALAIGLASSVGIDLDRFVAGL---TAVSVPGRMERVNRGQDFLAIVDY 360 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++ +VL + GR V+G G + S V Sbjct: 361 AHKPAA-----VAAVLEAVRRQAAGRVAIVVGA----GGDRDRSKRAIMGKESALRADLV 411 Query: 405 WLSG-----FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 ++ +++A+ + + + D V++ K Sbjct: 412 IVTDDNPRSEDPALIREAILTGAQKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGK 471 Query: 451 S 451 Sbjct: 472 G 472 >gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium leprae TN] gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium leprae Br4923] gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase [Mycobacterium leprae] gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase (meso-diaminopimelate-adding enzyme) [Mycobacterium leprae] gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase (meso-diaminopimelate-adding enzyme) [Mycobacterium leprae Br4923] Length = 530 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 160/485 (32%), Gaps = 55/485 (11%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +L+ + P V G+++ ++ + + F A+ G G + A Sbjct: 21 LPELVAQVGAVLADGPGQAATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAGVA 80 Query: 61 VQKGAGLVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 +++GA V+ + VA + + S+P+ + L LA AA T++ ITG+ Sbjct: 81 LERGAVAVLTDVAGVAELTAQASSVPILIHPEPRSVLGGLAAAAYGHPSNRMTVVGITGT 140 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDV 160 GKTTT M+ L + + +G+ I + A + V Sbjct: 141 SGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVERGV 200 Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220 + + E+ SH + + + +A T ++ HL +EE AKA +F+ Sbjct: 201 ETVVMEV-SSHALSLGRV-EGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSLL 258 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + A T+ + G+ + + Q + V G Sbjct: 259 RARTVVVCIDDDAGRATAARAGDAITVSALGQPASWRATDIRSPGVGAQEFTAVDPAGVQ 318 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 V G + N L+ L I+ ++ + A ++ G Sbjct: 319 HRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIRIPGRL-----ERIDCGQDF 373 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 L Y P ++ + ++ L + R V G GE + E+ + Sbjct: 374 LALVDYAHKPGALHSVLTAL----LQPDHRLAVVFGA---GGERDPGKRAPMGEIAAEL- 425 Query: 401 ISHVWLS-----GFHVLALKD-------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V ++ G A++ A + V + + DVV+ Sbjct: 426 ADLVVVTDDNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVL 485 Query: 449 V--KS 451 V K Sbjct: 486 VAGKG 490 >gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M12] gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Xylella fastidiosa M12] Length = 491 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 81/456 (17%), Positives = 143/456 (31%), Gaps = 41/456 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++G+ +DSR + P +AF A+ G G FI A +GA ++ + Sbjct: 15 DVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS--------- 132 V + L +A T++ +TG+ GKT+T ++L A Sbjct: 75 A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 133 Query: 133 ------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 + + + + L ++ D + + +S + V + Sbjct: 134 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVHYDV 192 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 AV T + HL +E +AKA +F + + D LL + Sbjct: 193 AVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDLFGLRLLHG-LAKGVRRV 251 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 S +AD + + ++ + V +G N+L G++ L Sbjct: 252 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLAVAGVLYAL 311 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + LS P GR R G ++ + + A VLS +S H Sbjct: 312 DYALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSH 365 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417 GR I V G G V++ N V ++ + + Sbjct: 366 VCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADILAG 421 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V DVV++ K Sbjct: 422 FVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKG 457 >gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 489 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 20/201 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + GI+ DSR + + ++G DGH + AV GA ++ + + + Sbjct: 22 NPSITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAVANGAVAILAEEPIDG----VEV 77 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140 PV + D A K+A K + ITG+ GKTTT ++ + + I Sbjct: 78 PVVLLQDTKHAAGKVADLFYDHPSHKLKVYGITGTNGKTTTTKLTYDLFRAAGQKAGMIS 137 Query: 141 ----GSYNNHIGVPLTLAR-------MPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHIA 187 I P T + V+ G+ + L +S + V+ H A Sbjct: 138 TIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQGVTDCVLEVSSHALMEGRVEGVKFHAA 197 Query: 188 VITTIAPAHLSNFSGIEEIAS 208 T + HL + +EE A Sbjct: 198 AFTNLTHDHLDYHASMEEYAQ 218 >gi|297519212|ref|ZP_06937598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli OP50] Length = 218 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 L+D+SYNAN SM AA+ VL+++ G R+ V+GDM E+G S++ H+ + E Sbjct: 91 NQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHVQVGEAAK 146 Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSC 455 I V G A+ A S + L ++S + + V ++VK S S Sbjct: 147 AAGIDRVLSVGKQSHAISTA---SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSA 203 Query: 456 GFYRLINLLLE 466 ++ L E Sbjct: 204 AMEEVVRALQE 214 >gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 511 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 154/482 (31%), Gaps = 52/482 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + L Q G IG V+ +DS + F A+ G G F A A Sbjct: 4 SLDTLAQLSGGRVIGDAT-VEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKA 59 Query: 66 GLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 G V+ + + + P+ V+D+ L ++ + T+I +TG+ GKTT Sbjct: 60 GAVLTDAAGLDLLTEAQETRPILVVEDIRAVLGPISAEIYGHPTRELTVIGVTGTSGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFE 166 T +L L + IG+ + ARM + + Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVV- 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S R + T ++ HL +E+ AKA++F G + L Sbjct: 179 MEVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAERAVLC 238 Query: 227 YDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 DD + E ++ AKS + T+ + G + + + + + + G + Sbjct: 239 IDDEWGERMRGVAKSAGHEVTTVDTQGAAATISARQTATEA-TGAQEVALDYDGANFTFR 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N + LG+ + + D + + F + + Sbjct: 298 LPLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAVPGR----MERIDRGQDFVAVVD 353 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y PA++ A + L GR V+G G S + + Sbjct: 354 -YAHKPAAIAAVLDTLRGQLEGTTGRVGIVVGA----GGDRDSSKRPIMGAAAASRADLT 408 Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 ++ + + +DA P+ + + + GD V+V Sbjct: 409 VVTDDNPRSEDPATIRAAVVEGARDAAPQG-DIREVGSRARAIDEVVDWAEPGDAVIVVG 467 Query: 450 KS 451 K Sbjct: 468 KG 469 >gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] Length = 486 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 138/472 (29%), Gaps = 40/472 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 HDLL G + G P+ V+G+++DSR++ P + FFA+ G DG FI A+ Sbjct: 1 MKLHDLL----GDAAGRDPEIAAVDVSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAI 56 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121 + +LS+P + + AL A R ATI A+TG+ GKT+ Sbjct: 57 A---AGAIAVAGGSPPGTALSVPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTS 113 Query: 122 TKEMLTIALSSIKKT---------YACIGSYNNHIGVPLT---LARMPVDVDFGIFEL-- 167 + + + + + P ++ G+ L Sbjct: 114 VAAFTRQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAF 173 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S G ++ VR T ++ H+ + +AK +F L G + Sbjct: 174 EASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGAAVIS 233 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 D + + + G + + + + + + Sbjct: 234 ADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRMYTIR 293 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 + A + L + EG R + + + Sbjct: 294 LPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGRLELVGEHNGAPIFIDYAH 353 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 A L + P+ + + V G G + L ++ V ++ Sbjct: 354 KPDA----LAKALQALRPYAARQLVVVFGA----GGDRDTGKRPLMGAIAAAEADRVIVT 405 Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + L + L GD +V+ K Sbjct: 406 DDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIKVAIGELQPGDALVIAGKG 457 >gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 495 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 145/478 (30%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LL + + V+G+ +DSR++A +AF AI G G F+ A Sbjct: 1 MSRSMALSQLLPDV-----ALPHDVQVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 GA V+ + + V + L +A R ++ +TG+ G Sbjct: 56 RANGATAVLFE-PPAPDGLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164 KT+T ++L AL+ + + + +P + + Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQA 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + V +AV T + HL + + +AKA++F + Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L + L + S +AD + + + + L + Sbjct: 235 NLDDGFGRTLFASLDPVLRAIGVSS---RAHADASVSAQALQLDHNGINFALNIRGEVHP 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H + ++ D+ A A + + G+ R G ++ + Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A LS + H + R I V G G + ++ N Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + R + D+V++ K Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461 >gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] Length = 483 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 84/460 (18%), Positives = 141/460 (30%), Gaps = 44/460 (9%) Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 G+ + G++ DSR + F A+ G DG A + Sbjct: 11 GLPADPEITGVTADSRKVRAGTLFAALPGTKVDGAS-----FAAAAIQAGAAAVIADRDL 65 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 L +P D A A R +A+TG+ GKT+ + +T A Sbjct: 66 GLPVPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSAS 125 Query: 140 IGSYNNHIGVPLTLAR------------------MPVDVDFGIFE--LGMSHLGEIRFLT 179 +G+ + P + G+ + S G + Sbjct: 126 MGTLGVTVSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRL 185 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 V+ A + HL +E +AK +FE L G + DS A + Sbjct: 186 DGVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAAA 245 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299 + + + G+ A +L K + E W+ + +G+S +V G A N L+ Sbjct: 246 AVIAGQWVMPVGE-TGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVA 304 Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 G+ ++ L GR +R G E+Y + +V Sbjct: 305 AGLCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGG------EAYVDYAHTPDGLETV 358 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413 L + PH GR I V G G L ++ ++ + Sbjct: 359 LKALRPHVRGRLIVVFGA----GGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAI 414 Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + L DGD++VV K Sbjct: 415 RAEVLAGCPGAAEIGDRREAIREAVAMLRDGDILVVAGKG 454 >gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis Uo5] gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis Uo5] Length = 481 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 79/505 (15%), Positives = 155/505 (30%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154 +A TG+ GKTT LS T G + Sbjct: 114 LAFTGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + + E+ S + + + + V I P H+ E+ K Sbjct: 174 AVQNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + + + +N D F +LK + S ++ + + + + + Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + G+ Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G ID ++N + ++S + H G+ VLG GE + D Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ + + + V + + Sbjct: 388 GILLNQHPEIQVFLTADDPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y+++ E++P Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471 >gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 515 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 75/482 (15%), Positives = 138/482 (28%), Gaps = 47/482 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 D L+ ++ I V+ + DSR AP F + G D H F+ ++ G Sbjct: 3 LRDWLKGLEYECIRGSLDTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFVPDVLKAGVR 62 Query: 67 LVVVNTDMVA------------SIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIA 112 ++V + + V D AL L A +K I Sbjct: 63 VLVTERGIEEELKKAKEEGGLTEEDLSEVTVLQTGDGRHALALLSAARFGYPATKMVTIG 122 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTL-----ARMPV 158 +TG+ GKTTT M+ L + K IG+ IG P + Sbjct: 123 VTGTKGKTTTTHMIKTILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQLHQAFAQMA 182 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D + +S G + + T I+P H+ + A L Sbjct: 183 DSGCQYMIMEVSSQGIKMHRVDGITFDYGIFTNISPDHIGP-DEHADFAEYLYCKSRLLN 241 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 +N +DS FE + + + + + Q Sbjct: 242 MCRIGLVNRNDSHFEDIIKDADCELYTYSVTEERGGLHGSGESGADFTASDVRYVSQPDF 301 Query: 279 KSMEVVHHGIGYHMA-------QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 E G N+ L VS+ + G+ Sbjct: 302 VGTEFDVKGRYEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALEHIRVNGRMEI 361 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + L+D ++NA +L+ + + R + V G + + + Sbjct: 362 VHTSARCTVLVDYAHNAVSMES-----LLTTLRQYHPKRLVVVFGCGGNRSKDRRYTMGE 416 Query: 392 LAEVLSLYNI-----SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445 + L+ +I S + ++ ++ + + S + GD Sbjct: 417 IGGRLADLSIVTADNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIEYSISHAMPGD 476 Query: 446 VV 447 ++ Sbjct: 477 MI 478 >gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7803] gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. WH 7803] Length = 499 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 88/483 (18%), Positives = 145/483 (30%), Gaps = 44/483 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M T H LL+A+ V V ++ DSR + F + G DG F A Sbjct: 1 MTQ--TLHALLKAVGLPVPAGVANATVTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAA 58 Query: 61 VQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKAT--IIAITGS 116 + GA V++ A + V V D + +LA A R +I +TG+ Sbjct: 59 LASGAAAVLIGEQAAAAHPPAPGDSVLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGT 118 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFG------------ 163 GKTTT ++ + + A G+ N G LT D Sbjct: 119 NGKTTTTHLIEHLSQACGRPAALFGTLVNRWPGHSLTATHTTAAADRLQAQLAEALEGGT 178 Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---K 219 + + +S + R AV T + HL +E AKA +F + Sbjct: 179 QVAAMEVSSHALDQQRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGE 238 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 +N DD + L + + + + AD + + S ++ Sbjct: 239 GPRAVVNVDDPWGRQLADRL----GERAWRCSLAHEADLTMADLRMTSNGVDGALRTPLG 294 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +G N+L +G + + + AL F GR R L Sbjct: 295 EGRFHSPLVGRFNLMNVLQAVGALLQQGLPLPLLLNALPSFRGVPGR--MERIVLTGSAA 352 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 + + L P G+ I V G G ++ Sbjct: 353 EDHPAVLVDYAHTPDGLRNALEACRPFVRGQLICVFG----CGGDRDRGKRPQMAAIAAA 408 Query: 400 NISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449 V ++ G + + LP + GD+V++ Sbjct: 409 LADQVVVTSDNPRTEDPGQILDDVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIA 468 Query: 450 -KS 451 K Sbjct: 469 GKG 471 >gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 499 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 147/462 (31%), Gaps = 34/462 (7%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---V 70 + I +N ++ S+ + FF+IKG + DGH +I A+ +GA V + Sbjct: 11 LSIKHIFGPASQTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVAVFGTSI 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEM--- 125 + S VDDV + + + I I +TG+ GKTT Sbjct: 71 EELRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRS 130 Query: 126 --------LTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------VDVDFGIFELGM 169 ++ + Y + + + E+ Sbjct: 131 LLTLLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEV-- 188 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + + +A+ T ++ HL E K ++F+ + + D Sbjct: 189 SSIAIDQQRVEDIYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQ--QAKHAVINIDDQ 246 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L G K YS + A Q + S+ ++ +G+S +V G Sbjct: 247 DMGKDLSRLF--EGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYG 304 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-YNA 348 + N+L +G ++ I L EGR + NQ + Sbjct: 305 DYNIANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQKVILDYAHTPVAL 364 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISHVWLS 407 + +Q+ G I M +M + + ++ + + + Sbjct: 365 TRLVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHDPNVIV 424 Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + + P + ++H + T L S D++++ Sbjct: 425 DQVMTGFSN--PSASNIHRAPTRTEGVLKSLSLGKPNDIILL 464 >gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] Length = 505 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 74/447 (16%), Positives = 141/447 (31%), Gaps = 39/447 (8%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR + + F AI +I A+ +GA V+V+ + L VF + ++ Sbjct: 41 DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAAEGV-ELDKQVFAIANLH 99 Query: 93 GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------------Y 137 + ++A A + ++I ITG+ GKT+T +LT A + T Sbjct: 100 EVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTLGAGITGE 159 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 I V + G+ + +S + V +I T Sbjct: 160 RRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNIVAFTNFTRD 219 Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 HL +EE A+ KA+IF T + D + + Sbjct: 220 HLDYHGTMEEYAAQKAKIFTLPGVTTALLNLDDAAAENHFHNTLPEGMRGIGMTSRGHSE 279 Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 A + + +E ++ ++G+S VV IG N+L ++ + + Sbjct: 280 ASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQGIEPQAIAE 339 Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 AL+ P GR R R + + +V ++ E ++ Sbjct: 340 ALAPLEPVLGRMTRIRENDKLPLVVVD---------AGHTPDAVRQAVTALRESGHTRIV 390 Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPRSIHVHY 426 G+ ++A + + ++ V ++ V Sbjct: 391 TVFGATGDRDPGKRPEMAR-IVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEHPERVIE 449 Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451 + + DVV++ K Sbjct: 450 IRDRASAIAYAIDAANPDDVVLLQGKG 476 >gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7805] gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7805] Length = 499 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 63/479 (13%), Positives = 130/479 (27%), Gaps = 45/479 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H LL+A + V ++ DSR + F + G DG F A+ GA Sbjct: 2 LHALLKAAGLPVPSGLANATVTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAA 61 Query: 67 LVVV-NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 V++ + + V + D + +LA A + + I T K Sbjct: 62 AVLIGEQAAASHPPAFGDAVLVLPDPVSVWAGELASAFWQQPSTRLGLIGV--TGTNGKT 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------------ 166 T + + + + + + + + Sbjct: 120 TTTHLIEHLSQACGQPAALFGTLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAA 179 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTI 223 + +S + R AV T + HL +E AK+ +F + Sbjct: 180 MEVSSHALDQHRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRA 239 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 +N DD + L + + +S +AD + + S + Sbjct: 240 VVNTDDPWGRQLADRL----GERCWSSSLETHADLTMGDLRMTSAGVDGLLVTPLGEGRF 295 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G N++ +G + + + ++ F GR +R + Sbjct: 296 HSPLVGRFNLMNLMQAVGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPS 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + L P +GR + + G G ++ Sbjct: 356 VIVDYAHTP-DGLRNALLASRPFTKGRLVCLFG----CGGDRDRGKRPQMASIAASLADR 410 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + LP D++++ K Sbjct: 411 VVITSDNPRTENPNQILEDIVVGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKG 469 >gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] Length = 508 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 146/470 (31%), Gaps = 53/470 (11%) Query: 11 LQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 + + G + G V G+ DSR + P F ++G DGH + A GA Sbjct: 15 ARTVPGSPVTRAGGADDLTVRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMA 74 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125 ++V+ + S+P V V L L ++ +TGS GKTTT + Sbjct: 75 LLVDRPV-----ETSLPQLCVPSVRAQLGPLGALLAGDPARALGLVGVTGSNGKTTTSAL 129 Query: 126 LTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGM 169 + L + +G+ + L A + + E Sbjct: 130 VRGVLEAAGTCTGVVGTLGAQVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVE--A 187 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S + + +AV T HL + +E+ ++KA +FE +T + DD Sbjct: 188 SSIALDMGRMDGLAFEVAVFTGFEEDHLDHHGTVEQYWASKARLFE-PGRTAAGVVVTDD 246 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + L + + G +AD ++ W+ + + + + V +G Sbjct: 247 PWGRRLADQ----AAVRVTRVGSGADADVRVLGWRTGAAGTEVLLGDDAGGHRVRSPLVG 302 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+ +L D L+ P GR + + A Sbjct: 303 RVHVTNLAAAWATGRVLGVPPDRIAAGLAAVAPPRGRNTVLGGSGRPVVVVDYAHTPRAL 362 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407 A++ + GR V+G G + L E VWL+ Sbjct: 363 AAAVDTVRDLT-----GPGGRVHLVVGA---RGRRDRYKRQGLGESARAA--DCVWLTNE 412 Query: 408 ---GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 G A++ L V + DVV+V Sbjct: 413 GSHGEDPAAIRAELRLGLLGTPAAVRTVPDRREAITAAVRAAGPADVVLV 462 >gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium resistens DSM 45100] Length = 552 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 73/520 (14%), Positives = 140/520 (26%), Gaps = 83/520 (15%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T L + G V +I S + F A+ G G F Sbjct: 1 MTTLQALAELTGGRISSTDAHVEVTSAAIGSTDVRAGGLFCAVPGLKTHGAQFA------ 54 Query: 64 G---AGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116 G A V+ + + + + P VDDV + +A ++I ITG+ Sbjct: 55 GTSQATAVLTDPAGEDILEAQGVELPRLIVDDVREWMGPVAAEIYGHPSRRLSVIGITGT 114 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-------GIFE--- 166 GKTTT ++ AL + G P+ + + E Sbjct: 115 SGKTTTSYLVEKALLPNHSVGIIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVT 174 Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221 + +S H + +A T ++ HL +E+ A AK + EK Sbjct: 175 HVVMEVSSHALELGRVHGIDFDVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHD 234 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTI-------------YSFGKSKNAD-----FQLRKW 263 + + L + + G + D Sbjct: 235 VKLPAAVICVDDEWGQRMAQLASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIP 294 Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-----------GIVSILTADVDT 312 E + + + + + ++ + A + Sbjct: 295 TWVLESVQVTPSGRQEIRFHTGATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGE 354 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 ++A + R + F + + Y P ++ A + L+ P EGR Sbjct: 355 DVEAAAQHLRDVQVPGRMQAVDEGQDFLAMVD-YAHKPGAVAAVVRTLADYLPTKEGRIG 413 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYS 427 V+G G + V+++ + +++A+ ++ Sbjct: 414 IVIGA----GGNRDQDKRPKMGYEAALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFA 469 Query: 428 E--------------TMDGLFLFIQSSLVDGDVVVV--KS 451 E GD +VV K Sbjct: 470 ERGVEKKTVTLANIADRAEAITAAVQWAQPGDAIVVAGKG 509 >gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 516 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 71/434 (16%), Positives = 134/434 (30%), Gaps = 42/434 (9%) Query: 30 ISIDSRSIAPQEAFFAIK-GPHY---DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + DSR I + FFA G DG FI A++ GA VV + + S + Sbjct: 26 VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVVFDLKDMDSQLTDHPQC 85 Query: 86 FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---- 139 F V ++ +L II +TG+ GKT+ + L AL + A Sbjct: 86 FAVKNLAAQAGQLCSQWYGHPSKELNIIGVTGTNGKTSITQWLAQALDASNHRTAVLGTL 145 Query: 140 --------IGSYNNHIGVPLTLARMP--VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 + + P ++ + + +S + A Sbjct: 146 GTGFPGALVQTGYTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIAGTDIQCAAF 205 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD------------DSFFELLKA 237 T + HL + + A AKA++F+ + D ++ Sbjct: 206 TNLTQDHLDYHGSMGDYAEAKAKLFQQAGLKHAVINLDDAFGRELAMNLLAKDGMKVWAY 265 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + FG + + + V + S ++ +G N L Sbjct: 266 ALSPSAFEGFEKFGDRLQRIYAKETTLSGAGYDSIFVYGKVGSAQLHIPLLGEFNVSNAL 325 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-YNANPASMKAA 356 + + A + +S +P GR + R Q +L+ Y P +++ Sbjct: 326 AVWATLLSQGMRCEVAAQKVSQLNPVLGRMELIRFGKPQKAGSLLAVVDYAHTPDALEKT 385 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHV 411 + L ++ G+ V G G + L ++ N H+ ++ Sbjct: 386 LQALRPVADQRGGKIWCVFG----CGGDRDAGKRALMGAVAERNADHILITSDNPRSEDP 441 Query: 412 LALKDALPRSIHVH 425 A+ + I Sbjct: 442 QAIMQMIRGGIQAE 455 >gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas entomophila L48] gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas entomophila L48] Length = 487 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 70/465 (15%), Positives = 149/465 (32%), Gaps = 61/465 (13%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV----------QKGAGLVVVNTD 73 + +++DSR++ P + F A+ G DG I A+ ++GA + Sbjct: 15 DPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQGASV------ 68 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 + +P+ V ++G L+++A ++ +TG+ GKT+ ++L AL Sbjct: 69 ----LPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQALD 124 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRF 177 ++ + IG+ L R+ + + +S + Sbjct: 125 ALGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSHALEQG 184 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + IAV+T ++ HL + A +N DD F L Sbjct: 185 RVAALDFDIAVMTNLSRDHLDYHGSM-GAYEAAKAKLFAWSSLRARVVNLDDDFGRRLAE 243 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + + A ++ + + + +G NML Sbjct: 244 AHGQSRLISY--SLQDPAATLFCKQAAFNDDGVRAVIVTPQGEHALRSRLLGRFNLSNML 301 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + L +D +K H GR R ++D ++ + Sbjct: 302 AAVATLLALDYPLDEILKVTPQLHGPIGR--MQRLGGGDKPLVVVDYAHTPDALE----- 354 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412 VL + PH G+ + + G G S L ++ V ++ + Sbjct: 355 KVLEALRPHAHGKLLCLFG----CGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTEDPL 410 Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + ++ DV+V+ K Sbjct: 411 RIFDDIRPGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKG 455 >gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Desulfovibrio magneticus RS-1] gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Desulfovibrio magneticus RS-1] Length = 488 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 75/450 (16%), Positives = 122/450 (27%), Gaps = 41/450 (9%) Query: 30 ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89 ++ DSR F A+ G DG ++ A++KG VV + + VD Sbjct: 25 VAADSRRATSGGVFVAMAGSRDDGARYVADALEKG-VAFVVAAPGHDLPAGTTARLVAVD 83 Query: 90 DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147 D AL LA A ++A+TG+ GKTT ++ + T +G+ Sbjct: 84 DPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGTVAYRW 143 Query: 148 GVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTIA 193 + A + I E + S + + A T + Sbjct: 144 PGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAAFTNLT 203 Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGK 252 HL + AKA++F + D + L + + Sbjct: 204 QDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGLTVPPT 263 Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312 E + S V G H AQN+L G+ L +T Sbjct: 264 GFGRLLSGHVQHHGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGVALALGWPAET 323 Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372 N + + + A +VLS GR Sbjct: 324 FAALADCHGAPGRL----ERIPNPSGRAVFVDYAHTPDA----LENVLSAAREFTAGRLF 375 Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIH 423 V G G L L+ + +K L ++ Sbjct: 376 VVFG----CGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARR 431 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + DV+V+ K Sbjct: 432 AILEPDRRRAIELALSEMRPEDVLVIAGKG 461 >gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate ligase [Streptomyces venezuelae ATCC 10712] Length = 565 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 16/218 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL + ++GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 56 LGDLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAA 115 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124 ++ + + +PV V++ G + +LA R A + I ITG+ GKTTT Sbjct: 116 AILTDPTGAERAAATGLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAY 175 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++ L +G+ IG + P D M G + Sbjct: 176 LVEGGLRGTGHHTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVS 235 Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIAS 208 +AV ++P H+ S +E+ Sbjct: 236 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQ 273 >gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] Length = 487 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 80/457 (17%), Positives = 160/457 (35%), Gaps = 43/457 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 ++ DSR + P F A G H DG +I AV GA V+ ++ ++ + Sbjct: 8 NQTFTAVTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDSQDFVWNAAIKV 67 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 GV ++ + ++A K +I +TG+ GKT+ + + A+ ++ K A IG Sbjct: 68 SNLGVRELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIG 127 Query: 142 SY-------------NNHIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183 + P + + D+ + +S G + + + Sbjct: 128 TIGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRVNAIE 187 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 AV T + HL ++ ASAK ++F+ T +N DD F + + Sbjct: 188 FDFAVFTNLTRDHLDYHVTMDAYASAKQKLFD-WPSLRTAIVNADDDFGKKMAESLRVNN 246 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + D + + M+V + + +G A N+L L + Sbjct: 247 KSLLTY--GLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVLATL 304 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 ++ AI A++ P GR + N ++D ++ + +VL + Sbjct: 305 LARQVPLNEAIAAIAQIKPVAGR--MQQFGGNDKPLVVVDYAHTPDALE-----NVLVSL 357 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL 418 +G+ + V G G + L ++ HV ++ + + + + Sbjct: 358 REQTQGKLVCVFG----CGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHV 413 Query: 419 PRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + V + DVV++ K Sbjct: 414 VNGMTVLPSVAPDRAIAIQQAIKFANKDDVVLLAGKG 450 >gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Gallibacterium anatis UMN179] gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Gallibacterium anatis UMN179] Length = 488 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 73/459 (15%), Positives = 147/459 (32%), Gaps = 42/459 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IG 79 + +N + +DSR++ + F + G DG F AV GA +V++ ++ Sbjct: 14 EQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQDQARIEW 73 Query: 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSI---- 133 +IP V + L+ LA A + + +TG+ GKTT +LT + Sbjct: 74 HDNIPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWTHLLGKKS 133 Query: 134 -------KKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTHLVR 183 Y + + N G + + R V + +S G ++ ++ Sbjct: 134 AVMGTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQHRVDALQ 193 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 AV T ++ HL ++ A AK +F G I D+ + L+ A+ Sbjct: 194 FAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNRIINADDEVGKQWLQQMDDAIE 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + F + + + V IG N+L+ + Sbjct: 254 VSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEFNVCNLLLATATL 313 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + +++ GR + + + +A +++AA Sbjct: 314 LSLGYSLSCLSDSVNQLQGVCGRMECFTAEGRPTAIVDYAHTPDALDKALRAA------- 366 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 H +G+ V G G ++ H+ ++ + + Sbjct: 367 RLHCDGQLWCVFG----CGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIINDI 422 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L + ++ + DV++V K Sbjct: 423 VQGLDFPNNATIIHQRKQALVYAFACANANDVILVAGKG 461 >gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] Length = 498 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 141/472 (29%), Gaps = 43/472 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 LL + +G P + G+ +DSR++ P AF AI G G F+ A GA Sbjct: 3 LSQLLPDV--ALVGHDP--VLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGAS 58 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 ++ A + + + V + + +A ++ +TG+ GKT+T + Sbjct: 59 AILFEPPAPAELPAPAD-AIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGTNGKTSTVQ 117 Query: 125 MLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPV-------DVDFGIFELGMS 170 +L A + I G L D + +S Sbjct: 118 LLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVS 177 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + V +AV T + HL + A +N DD+ Sbjct: 178 SHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDM-ASYGAAKARLFHRPGLKAAVVNLDDA 236 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 F L A A S + +A + + E+ + G+ V +G Sbjct: 237 FGRQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLLGR 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L G + + + LS P GR R G T++ + + Sbjct: 297 FNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMN--RLGGEDGLPTVVVDYAHTPD 354 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 A L + H G V G G + ++ + V ++ + Sbjct: 355 A----LKQALDSLHGHLHGALFCVFG----CGGERDTGKRPQMAAIAERLANQVIVTDDN 406 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + V + GD++++ K Sbjct: 407 PRGEDGDVIVADILAGFQNADAVTVQRSRARAIGLAVKRAGAGDIILIAGKG 458 >gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neorickettsia risticii str. Illinois] gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neorickettsia risticii str. Illinois] Length = 326 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 9/259 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L T + ++ I + S+D + E F ++D H I A Sbjct: 2 LLTADLIRSILKAELICEYQAKIDISRSKFSMDYEKVGKGEIFVTADAKNHDTHHLIETA 61 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GA ++ D + + IP+ VDD L A+ KLA + +I ITGS GKT Sbjct: 62 YLNGALAIITKKDT--ACPKVPIPIIKVDDPLRAMEKLAAILIRNYQPIVIGITGSSGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TK ++ L + KT + G L + F + E+ +H G I Sbjct: 120 LTKNLIVTLLKNYGKTCYNEDGAGDFTGFTLGILNADFPCKFLVLEVDTTHSGNIDLFNQ 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + P + VIT I + E KA+IF+ G + + D+ + L + Sbjct: 180 ITLPKVGVITDIRFHPARSIDLRESTVREKAKIFQN----GCVAVLNFDTPYTELLLQEA 235 Query: 241 ALGIKTIYSFGKSKNADFQ 259 TI SFG ++N D + Sbjct: 236 RKNKATIISFGGNENCDVR 254 >gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia chondrophila WSU 86-1044] gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia chondrophila WSU 86-1044] Length = 532 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 134/366 (36%), Gaps = 17/366 (4%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--V 149 L K A + +I ITGS GKT+TK+ L L + N Sbjct: 162 QKILIKGAKQKLKKIDPYVIGITGSYGKTSTKDALGQLLQITLGSTFWPSKGINTDMGIT 221 Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209 R+ + + E+ G IR L L PH +IT I AHL F + I A Sbjct: 222 RSIRERLEPLTKYAVIEMAAYGTGSIRRLCGLTPPHAGIITGIGLAHLDRFGDQKTIYQA 281 Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269 K+E+ + + + G + N D+ + A+ ++ D + + E Sbjct: 282 KSELAQAIPEEGILICNGDNPGTRQISAEFKKQTTLLYGLDNSKRDLDCWITPLELTKEG 341 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + ++ +GKS E + G N + L A D A ALS P R + Sbjct: 342 TRFRIEWEGKSFEGITSLYGNTSLSNCAGAFAMACALGAQPDFAAAALSTLIPVNNRLQI 401 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R T I ++YN+NP +A+ VL Q+ RI + M E+ E + + H Sbjct: 402 SRDEER----TYIHDAYNSNPEGFLSALHVLHQMPARK---RILMTPGMIELAEQNLNMH 454 Query: 390 IDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + + L G + +S + +E F + + + Sbjct: 455 HKVGYQAAKV-CDLAILVGKTNRESLSLGLIAGGFTQS-QIITAEHRSEAFEKLAAVMEK 512 Query: 444 GDVVVV 449 GD V++ Sbjct: 513 GDAVLI 518 >gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida KT2440] gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas putida KT2440] Length = 496 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 143/458 (31%), Gaps = 39/458 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSRS+ P + F A+ G DG + I A+ +GA V + + Sbjct: 16 DPLIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDV 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V ++ L+ +A ++ +TG+ GKT+ +++ AL + + IG Sbjct: 76 PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R+ + + +S + + IA Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHALEQGRVAALEFDIA 195 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A +N DD F L A Sbjct: 196 VMTNLSRDHLDYHGSMEAY-EAAKAKLFAWPSLRCQVVNLDDDFGRRLAADFARRPSVDH 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQNMLMTLGIVS 304 + C E + + ++ + N+ L V+ Sbjct: 255 IETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRFNLSNMLAAVA 314 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L A + L V +G R + ++ + + A VL + Sbjct: 315 TLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDA----LEKVLEALR 370 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 PH G+ + + G G L ++ V ++ + ++ Sbjct: 371 PHAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPSRIFDDIR 426 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V + + ++ DV+V+ K Sbjct: 427 PGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKG 464 >gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] Length = 509 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 84/484 (17%), Positives = 141/484 (29%), Gaps = 50/484 (10%) Query: 6 TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63 T +L + I G ++ I +DS ++A + F A+ G G +F Sbjct: 4 TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 63 Query: 64 GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119 GA V+ + D + P VDDV L + + +I +TG+ GK Sbjct: 64 GALAVLTDRDGATILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGK 123 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRF 177 TTT +L L IG+ G P+ + M G Sbjct: 124 TTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHV 183 Query: 178 LTHL------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + + ++A T ++ HL +EE AKA F Sbjct: 184 VMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAADHQ 243 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + A +T+ + GK + L K+ EQS+ + V Sbjct: 244 VVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPVTL 303 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N + L D + ++ G+ R Q F ++D + Sbjct: 304 ALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ---VAVPGRMERIDEGQDFLAVVDYA 360 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + VL + +GR V+G G + LS V Sbjct: 361 HKPAAVAA-----VLDTLRTQIDGRLGVVIGA----GGDRDATKRAPMGELSARRADLVI 411 Query: 406 LSGFH----------------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ + + V + GD +VV Sbjct: 412 VTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVV 471 Query: 450 --KS 451 K Sbjct: 472 AGKG 475 >gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1] Length = 496 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 142/458 (31%), Gaps = 39/458 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + +++DSR++ P + F A+ G DG + I A+ +GA V + Sbjct: 16 DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDA 75 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P+ V ++ L+ +A ++ +TG+ GKT+ +++ AL + + IG Sbjct: 76 PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135 Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187 + L R+ + + +S + + IA Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGRVAALEFDIA 195 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V+T ++ HL +E A +N DD F L A Sbjct: 196 VMTNLSRDHLDYHGSMEAY-EAAKAKLFAWPSLRCQVVNLDDDFGRRLAADFARRPSVDH 254 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQNMLMTLGIVS 304 + C E + + ++ + N+ L V+ Sbjct: 255 IETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERILRSQLLGRFNLSNMLAAVA 314 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 L A + L V +G R + ++ + + A VL + Sbjct: 315 TLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDA----LEKVLEALR 370 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415 PH G+ + + G G L ++ V ++ + ++ Sbjct: 371 PHAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPLRIFDDIR 426 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V Y + ++ DV+V+ K Sbjct: 427 PGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKG 464 >gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium 8_1_57FAA] Length = 488 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + + V ++ DSR + F I G +DGH ++ +KG Sbjct: 1 MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A ++ D+ A + V ++ AL ++ A K +I ITG+ GKTTT Sbjct: 61 AAAIIAERDIEA---PKGVTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ L + IG+ IG + D + E Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + T + I + T + H+ + Sbjct: 178 V--SSQGLMLHRTAEIPFEIGIFTNLGKDHIGP-----NEHKDFEDYKRCKAMLFQQCKL 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + +FG S AD + S+ ++ V Sbjct: 231 GIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDV 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 I ++ +L +++ + K +G+ ++ F +ID ++ Sbjct: 291 EIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKGRIEMIKVSDDFTLMIDYAH 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA + S+L+ + + R + V G G S+ ++ EV + Sbjct: 351 NA-----MSLESLLTTLKEYEPKRLVCVFG---CGGNRSKDRRYEMGEVSGRLADLTIIT 402 Query: 407 SG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 S + + + I Y E + GDV+V+ K Sbjct: 403 SDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458 >gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium moorei F0204] gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium moorei F0204] Length = 523 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 20/350 (5%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIF 165 I ITGS GKT+TK ++ + T SYN +G+ +T+ + + Sbjct: 177 DLIKIGITGSYGKTSTKNVMQAMIGEQFNTLMTPASYNTPMGITITIRTLLKPIHKVFVC 236 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G H+GEI L V+P I V+T+I P HL+ F E I K ++ E L K G L Sbjct: 237 EMGADHVGEITNLMKFVQPSIGVVTSIGPQHLATFGSQENIIKEKMQMMELLPKDGLGVL 296 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 NYD+ F + K + S+G KS++ D+ S V + + + + Sbjct: 297 NYDNDFIRNYRLK----NLVKTVSYGVKSRDVDYYADDITYTRMGSSFTVVHRDEHVRIE 352 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L + + L T +A E R + + ID+ Sbjct: 353 TKLLGELNILNILSAICVARHLNVPWPTIQRAAKTMKQVEHRLE----LKTINGYRFIDD 408 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N+NP A+ VLS + R V M ++G + + + + V Sbjct: 409 AFNSNPVGSAMALEVLSMMP----NTRYVVTPGMIDLGAIQDDANKEFGRKM-KGKADEV 463 Query: 405 WLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449 L G ++ + L V +T+ F I ++ D +++ Sbjct: 464 ILVGEIQTKSIYEGLQEVGFDMNRVIVVKTVKEAFDHIYRHVLPSDTILL 513 >gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 495 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 148/455 (32%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 V+G+ +DSR + P +AF AI G G F A Q GA ++ A + + Sbjct: 19 DIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPAD 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 V + L +A T++ +TG+ GKT+T ++L A IG Sbjct: 79 -AIAVPGLRSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLRGGSIG 137 Query: 142 SYNNHIG-----------VPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187 + + + L++ + + E + +S + V +A Sbjct: 138 TLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGVHYDVA 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + AKA +F E + LN DD F +L + Sbjct: 198 VFTNLTRDHLDYHGDMASYGEAKARLFLR-EGLRSAVLNLDDEFGRVLAGRLAEGVRLVG 256 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S + A Q R + + E+ +S V +G N+L G++ L Sbjct: 257 VSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGGVLHALG 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V LS P GR R + ++ + + A L+ + H Sbjct: 317 DSVACVAAILSRLQPVAGRMN--RLGGDGERPLVVVDYAHTPDA----LEQALASLRAHA 370 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS- 421 R V G G + ++ + V ++ G A+ + Sbjct: 371 GARLTCVFG----CGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGF 426 Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + DVV+V K Sbjct: 427 AAPEAVQVERDRALAIARAIARSGAQDVVLVAGKG 461 >gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha H16] gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Ralstonia eutropha H16] Length = 520 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 94/493 (19%), Positives = 153/493 (31%), Gaps = 50/493 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GPH---YDGHDFI 57 PL QA + ++ D+R +A + FFA G DG +I Sbjct: 4 KPLLPLEVTAQASNALAWLRTNVAAAAQLTGDTRRLARGDVFFAYVLGNARLATDGRLYI 63 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 A+ GAG +V D S +P V + +A + ITG Sbjct: 64 AQAIAAGAGAIVYEADGFDWPFSDVVPHLAVSHLHQLAGPIAAGWHGNPVRGLAVTGITG 123 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165 + GKT+ + L L + A IG+ G P L + Sbjct: 124 TNGKTSCSQWLARVLQAAGTPCATIGTLGT--GFPGALQATGFTTPDAVQLQASLASLHD 181 Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +S G + +AV+T + HL + E +AK +F Sbjct: 182 AGARAVAMEVSSHGLEQERVAGTHFSVAVLTNLTQDHLDYHGSMAEYEAAKESLFRWDGL 241 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQ 269 + D LL A + A+G + +G + + + + Sbjct: 242 RTAVVNRDDAMGQRLLAADAAAIGAPHVIEYGIDGPGAATVRRPRGEWLRATNVRATPTG 301 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + S E+ IG N+L LG D AI AL P EGR + Sbjct: 302 TAFHIDGSFGSAEMATPMIGAFNVSNLLAVLGAALANGVAWDAAIAALRALTPVEGRMEL 361 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + A + + Y P ++ ++ L ++ GR V G G Sbjct: 362 FGAAGGPDAPLAVVD-YAHTPDALAQTLAALRPVAQARNGRLWCVFG----CGGDRDPIK 416 Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440 L ++ V L+ + A+ D + E L+ Sbjct: 417 RPLMGAVAEREADEVILTSDNPRSEDPQDILDAIADGMAVRARARQIEDRAAAILYAVRH 476 Query: 441 LVDGDVVVV--KS 451 DVV+V K Sbjct: 477 AAPADVVLVAGKG 489 >gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermobifida fusca YX] gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermobifida fusca YX] Length = 534 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 143/474 (30%), Gaps = 45/474 (9%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71 A V V G++ DSR++ P + + A++G G F A + GA V+ + Sbjct: 41 AATDLEQASSVDSVVVTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTD 100 Query: 72 TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129 + +PV V D L +A + +I TG+ GKTT ++ Sbjct: 101 PAGYDRAAATRLPVITVPDPRSRLGDVAAWIYGHPARELLLIGTTGTSGKTTVSYLVESG 160 Query: 130 LSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEI 175 L +G+ + L + + D + +S Sbjct: 161 LREAGMRTGLVGTVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALA 220 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 VR +AV T ++ HL + + + KA +F E +N DDSF L Sbjct: 221 LGRVAGVRYDVAVFTNLSQDHLDFHADLHDYFETKARLFT-PEFAKVAVVNRDDSFGRTL 279 Query: 236 KAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 + G + +F + + D+ + S V G + Sbjct: 280 IDRITEQGAIPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFN 339 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 M + I A G R FT I + Sbjct: 340 VANAMAAIVALIEAGVPLPTAVAGVAAA--RGVPGRMERVDEGQDFTAIVDY----SHKP 393 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412 A +VL+ + P EGR V+G G L + V L+ + Sbjct: 394 GAIEAVLTSLRPITEGRLTIVVG----CGGDRDRGKRPLMGEAAARLADAVILTDDNPRS 449 Query: 413 --------ALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + + + GDVVVV K Sbjct: 450 EDPVTIITSMLEGVAKVPVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKG 503 >gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium 3_1_46FAA] Length = 488 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + + V ++ DSR + F I G +DGH ++ +KG Sbjct: 1 MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A ++ D+ A + V ++ AL ++ A K +I ITG+ GKTTT Sbjct: 61 AAAIIAERDIEA---PKGVTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ L + IG+ IG + D + E Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + T + I + T + H+ + Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGKDHIGP-----NEHKDFEDYKRCKAMLFQQCKL 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + + +FG S AD + S+ ++ V Sbjct: 231 GIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDV 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 I ++ +L +++ + K +G+ ++ F +ID ++ Sbjct: 291 EIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKGRIEMIKVSDDFTLMIDYAH 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA + S+L+ + + R + V G G S+ ++ EV + Sbjct: 351 NA-----MSLESLLTTLKEYEPKRLVCVFG---CGGNRSKDRRYEMGEVSGRLADLTIIT 402 Query: 407 SG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 S + + + I Y E + GDV+V+ K Sbjct: 403 SDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458 >gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] Length = 496 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 70/468 (14%), Positives = 143/468 (30%), Gaps = 59/468 (12%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV----------QKGAGLVVVNTD 73 + +++DSR++ P + F A+ G DG + I A+ ++GA + Sbjct: 16 DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGASV------ 69 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131 + P+ V ++ L+ +A ++ +TG+ GKT+ +++ AL Sbjct: 70 ----LPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALD 125 Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRF 177 + + IG+ L R+ + + +S + Sbjct: 126 LLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQG 185 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + IAV+T ++ HL +E A +N DD F L A Sbjct: 186 RVAALEFDIAVMTNLSRDHLDYHGSMEAY-EAAKAKLFAWPSLRCQVVNLDDDFGRRLAA 244 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQ 294 + C E + + ++ + Sbjct: 245 DFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRF 304 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N+ L V+ L A + L V +G R + ++ + + A Sbjct: 305 NLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDA--- 361 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412 VL + PH G+ + + G G L ++ V ++ + Sbjct: 362 -LEKVLEALRPHAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTE 416 Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ R V + + ++ DV+V+ K Sbjct: 417 DPSRIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKG 464 >gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium efficiens YS-314] Length = 526 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 84/484 (17%), Positives = 141/484 (29%), Gaps = 50/484 (10%) Query: 6 TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63 T +L + I G ++ I +DS ++A + F A+ G G +F Sbjct: 21 TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 80 Query: 64 GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119 GA V+ + D + P VDDV L + + +I +TG+ GK Sbjct: 81 GALAVLTDRDGATILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGK 140 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRF 177 TTT +L L IG+ G P+ + M G Sbjct: 141 TTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHV 200 Query: 178 LTHL------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + + ++A T ++ HL +EE AKA F Sbjct: 201 VMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAADHQ 260 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 + A +T+ + GK + L K+ EQS+ + V Sbjct: 261 VVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPVTL 320 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G N + L D + ++ G+ R Q F ++D + Sbjct: 321 ALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ---VAVPGRMERIDEGQDFLAVVDYA 377 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + VL + +GR V+G G + LS V Sbjct: 378 HKPAAVAA-----VLDTLRTQIDGRLGVVIGA----GGDRDATKRAPMGELSARRADLVI 428 Query: 406 LSGFH----------------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ + + V + GD +VV Sbjct: 429 VTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVV 488 Query: 450 --KS 451 K Sbjct: 489 AGKG 492 >gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] Length = 514 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 88/484 (18%), Positives = 136/484 (28%), Gaps = 49/484 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L A Q ++ + + DSR + AF A+KG DGH ++ A GA Sbjct: 7 LDALRDAGQLRAVNGALPVSIVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGAT 66 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124 L +V + A + + +P V D + A A+TG+ GKTTT Sbjct: 67 LAIVEDEAAARV--IDMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVG 124 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELG 168 +L L + A IG+ IG D G+ + Sbjct: 125 LLRHLLDVAGQRAASIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVA 184 Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 M S + V AV T + HL +E AK E+ L G N Sbjct: 185 METSSHALHQHRVDGVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAPDGVACFN 244 Query: 227 YDDSFFELLKAKSHALGIK----TIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQG 278 DD ++ A+ G + +F ++AD + S Sbjct: 245 IDDVTWQHTVAEMDVSGSQASAPRRTTFSALQDADVTAHDVVYDATGSRFELRVRTAQGT 304 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 +V IG N L + LS GR +R R Sbjct: 305 TQHQVTLPLIGDFNVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEPTVLR 364 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 A+ + R I V G G + ++ Sbjct: 365 DYAH---TPDALERALLAVRPFTMRPDGAPSRLIVVFG----CGGDRDRGKRPVMGSIAE 417 Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ + ++ + R H DVVV+ Sbjct: 418 RLADVTIVTSDNPRTEDPERILDDIEAGMTRRDHQRIV-DRRDAIAAALRMASAHDVVVL 476 Query: 450 --KS 451 K Sbjct: 477 AGKG 480 >gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] Length = 487 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 127/446 (28%), Gaps = 41/446 (9%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 S + F A G DG FI A+ +GA V+V +A + VD+ Sbjct: 28 SAKVVSGGVFVAASGTAEDGARFIPDALARGAT-VIVAGPGIALPEGAKAALVTVDEPRK 86 Query: 94 ALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 AL L A R ++ +TG+ GKTT ++ ++ K +G+ Sbjct: 87 ALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRWPGVT 146 Query: 152 TLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 A + I E + S + + V T + HL Sbjct: 147 RDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAAGVFTNLTQDHL 206 Query: 198 SNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 +E A+ E L T LNYDD F L + A + Sbjct: 207 DYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGYGLTKAPAGFAR 266 Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316 + + ++ EV G H A N+L +G L +T Sbjct: 267 LLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYETFDAL 326 Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 N T+ + + A +VL GR AV G Sbjct: 327 ADCHGAPGRL----ERIPNASGLTVFVDYAHTPDA----LENVLGAAREFTAGRLFAVFG 378 Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA---LPRSIHVHYS 427 G L+ + ++DA L ++ V Sbjct: 379 ----CGGDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAIIEDAKPGLAKARKVIIE 434 Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ DV+V+ K Sbjct: 435 PDRRRAIALALDAMRPEDVLVIAGKG 460 >gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756] gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756] Length = 488 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 152/476 (31%), Gaps = 47/476 (9%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ ++ + + V ++ DSR + F I G +DGH ++ +KG Sbjct: 1 MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A ++ D+ A + V ++ AL ++ A K +I ITG+ GKTTT Sbjct: 61 AAAIIAERDIEA---PKGVTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 ++ L + IG+ IG + D + E Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + T + I + T + H+ + Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGKDHIGP-----NEHKDFEDYKRCKAMLFQQCKL 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 + + A + +FG S AD + S+ ++ V Sbjct: 231 GIANIDDPYYADIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDV 290 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 I ++ +L +++ + K +G+ ++ F +ID ++ Sbjct: 291 EIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKGRIEMIKVSDDFTLMIDYAH 350 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NA + S+L+ + + R + V G G S+ ++ EV + Sbjct: 351 NA-----MSLESLLTTLKEYEPKRLVCVFG---CGGNRSKDRRYEMGEVSGRLADLTIIT 402 Query: 407 SG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 S + + + I Y E + GDV+V+ K Sbjct: 403 SDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458 >gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] Length = 505 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 85/460 (18%), Positives = 141/460 (30%), Gaps = 59/460 (12%) Query: 24 QGFVNGISI---DSRSIAPQEAFFAIKGPHYDGHDFI----LHAVQKGAGLVVVNTDMVA 76 + IS D P + F D H + A+++GA ++ Sbjct: 30 DIVCSAISTTEVD---CEPGDLFIP---EAED-HTDLLSRCQAAIERGAAAILTEQ---- 78 Query: 77 SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134 + L+IP V D AL ++ A A + I ITGS GKT T ++ L + Sbjct: 79 -LLPLAIPQAIVPDAREALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAAS 137 Query: 135 KTY---------ACIGSYNNHIGVPLT-----LARMPVDVDFGIFELGMSHLGEIRFLTH 180 + I + P + V + MS G + T Sbjct: 138 QACGVISSLGYSDSIEQVSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTA 197 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 IAV+T + H S +AK IF L+ G +N DD L Sbjct: 198 GTSLDIAVLTNLRNVHTSEHGSAANYLAAKKRIFSHLKPGGLAIINADDHRSRQLLE--- 254 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + G AD R + + + ++++V IG N L + Sbjct: 255 -SLACPTLTVGLHAEADISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAV 313 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + L ++ T ++ + GR +R G + + ++K A V Sbjct: 314 AVGLSLGIELSTIVRGIENVTYLPGRMQRLEVGQEFGVIVDAASTPDTLAIALKTARRV- 372 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSG--------FHV 411 +GR + V E + + ++ V SG Sbjct: 373 ------TKGRVLLVFSASGEKNRDA----RPMLARVAEQGADLAVITSGNPRRESPREIT 422 Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 L D R H+ T + GD V++ Sbjct: 423 HQLLDGFHRPAKAHFIPTRAEAIRWALGHAQPGDCVLICG 462 >gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] Length = 520 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 88/489 (17%), Positives = 159/489 (32%), Gaps = 61/489 (12%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64 + A+ + P + D+RS+A +AFFA DG D FI A+++G Sbjct: 12 RQIADALSWLHAHVQPDA---HLHADTRSLAAGDAFFAYA---VDGADNRAFIDAAIERG 65 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATI-IAITGSVG 118 A V+V + S+ V ALN+LA R S A + + ITG+ G Sbjct: 66 AAAVLVQPEGFTGKLDASVTH-AVP----ALNELAGTIASAWYRDPSDAMLAVGITGTNG 120 Query: 119 KTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGI 164 KT+ + + ALS+ + + P + D Sbjct: 121 KTSCSQWVAAALSARGTRCAIVGTLGTGFVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQA 180 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + + IAV T + HL E +AKA +F E + Sbjct: 181 VAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFEAYETAKARLFAWPELRAAVI 240 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----------EQSWME 273 D + LL + G+ +AD + ++ Sbjct: 241 NRDDAAGRRLLASTRGHARTIAYGIEGEHGDADAKGAHQADAWLAASNVRATATGTAFHL 300 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + +V +G N+L LG++ A+ L+ P GR +R Sbjct: 301 STSDWGNADVEVQTLGLFNVSNLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGR 360 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 L ++ + Y P +++ + L I+ G + + G G + L Sbjct: 361 LQNDEPLVVID-YAHTPDALEKTLEALRPIATARGGELVCMFG----CGGDRDATKRPLM 415 Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444 ++ +V ++ + + + + + E L Sbjct: 416 GAIAERLADNVVVTSDNPRSEDPLSIIEQIAAGMQDASKARRVEDRASAILQAIRGAARE 475 Query: 445 DVVVV--KS 451 DV+V+ K Sbjct: 476 DVIVLAGKG 484 >gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus peroris ATCC 700780] gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus peroris ATCC 700780] Length = 481 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 146/474 (30%), Gaps = 62/474 (13%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + IS DSR FFA KG + ++++ A+ +G G V D + I Sbjct: 32 NVTFDSISYDSRKAKENCLFFA-KGAAFK-EEYLVSAISQGLGWYVAEKDY-----QVGI 84 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 PV V+++ A++ +A+ K I+A TG+ GKTT LS +T Sbjct: 85 PVIVVNNIKKAMSLIAMVFYGNPQKKLKILAFTGTKGKTTAAYFAYHILSQRYQTALLST 144 Query: 142 SYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 G + + + + E+ S + + + Sbjct: 145 MNTTLDGKTFFKSSFSTPENIDLFDMMAQAVKNNRTHLVMEV--SSQAYLVHRVYGLTFD 202 Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + V I P H+ E+ K + E + +N D F LLK + Sbjct: 203 VGVFLNITPDHIGPIEHPTFEDYFYHKRLLMENSR---AVVVNSDMDHFNLLKEEVEQKE 259 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 S ++ + + ++ + + + Sbjct: 260 HDFYGSQSDNQIKNSKAFRFSATGKLAGDYDIQLIGHFNQE-------------NAVAAG 306 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + G+ G +ID ++N + ++S + Sbjct: 307 LACLRLGASLEDIQKGIAETRVPGRMEVLTQKNGAKVIIDYAHNGDS-----LTKLISVV 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418 H G VLG GE + D +L+ + V+L+ A+ D + Sbjct: 362 EEHHTGNIALVLGSTGNKGESRRK---DFGLLLNKHPEIQVFLTTDDPNYEDPRAIADEI 418 Query: 419 PR--SIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 V + S D V++ Y++IN + EE+P Sbjct: 419 SSYIEHPVKTIIDREEAIKTAMSITSQPLDAVILAG-KGADCYQIINGVKEEYP 471 >gi|163784032|ref|ZP_02178990.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159880704|gb|EDP74250.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 167 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 + T+ID++YNANP S K AI LS + G++I VLGDM E+G+ S+ H ++ Sbjct: 40 IIKHKNLTIIDDTYNANPTSTKTAIETLSDLK----GKKILVLGDMKELGKFSKEKHEEI 95 Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 + NI V+L G V + + + + + + ++ V +K S Sbjct: 96 GRYILNSNIDKVYLYGEEVKHIYEIIKDKKESYLL-FKEKIAYHLKKEKEP-SFVWIKGS 153 Query: 453 NSCGFYRLINLLLE 466 S +I+LL + Sbjct: 154 RSMKMEDIIHLLRQ 167 >gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans DSM 20603] gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans DSM 20603] Length = 534 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 67/485 (13%), Positives = 138/485 (28%), Gaps = 53/485 (10%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + V+G++I + + P + F A+ G G +I A+ GA V+ + Sbjct: 22 VHAMADAQVSGLAIQTARVRPGDLFVAVAGQRSHGAQYIEQAIHAGARGVLTDEAGYRIA 81 Query: 79 GSLS------IPVFGVD---DVLGALNKLAVAARLRSKATII------------------ 111 L +PV VD DV ++A + A + Sbjct: 82 RELDASVGHELPVLVVDDGHDVREIAGQVAATIYGQPAARLTTAGITGTNGKTTTTFFLD 141 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171 AI + G T M T+ T + + + LAR + + + +S Sbjct: 142 AILRTAGHH-TGLMGTVETRLGDHTVSSTRTTVEAPELQGFLARCLEEEVTAVS-MEVSS 199 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGLEKTGTIFLNYDDS 230 + + T + HL + E A+ + G I ++ D Sbjct: 200 HALALHRITGTQFDVVGFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARAGVINVDDDWG 259 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 +A + T +AD+ + + + LQG + + Sbjct: 260 VQLHHQATIDTWSVATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHGQRLRCHSAL 319 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+ + + R I + + Sbjct: 320 PGTVNVANAALAALMARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQPLTIVDYAHTAE 379 Query: 351 ASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407 A A S+ + H G + G+ S ++ V + V+++ Sbjct: 380 ALDFALSSLRQDLAARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVAARLA-DVVYIAD 438 Query: 408 ----GFHVLALKDALPRS--------------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 G ++ L + I V + + + ++ DGD++++ Sbjct: 439 DDPHGEDRATIRQDLLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAAASDGDIILI 498 Query: 450 KSSNS 454 Sbjct: 499 AG-RG 502 >gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] Length = 468 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 66/460 (14%), Positives = 146/460 (31%), Gaps = 44/460 (9%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++G++ DSR + +AF AI+G DG+ +I AV++GA +V + I + V Sbjct: 7 ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTERE----IDHREVQVV 62 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITG----------------SVGKTTTKEMLTIAL 130 VD+ L +LA ++ + G T ++ Sbjct: 63 KVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLIGTVK 122 Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190 + VD + I + +S G + I V T Sbjct: 123 IKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDIVVYT 182 Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250 + HL E+ + K E+F+ + T +N DD + + + + ++ Sbjct: 183 NLTKDHLDLHEDFEDYLATKKELFKQAGEESTALINLDDEY----ADRIMSGLSAEVITY 238 Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310 G S AD Q+ + + S ++ S + + N+ L ++ Sbjct: 239 GFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLIYG 298 Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370 + + + +R + F + D ++N V I R Sbjct: 299 LSVEEIKAQLKEFNPFFRRLEVIYDDKFTIIDDCAHNPGNYRA-----VFETIKELDYDR 353 Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLS--------------GFHVLALK 415 + G + ++ + + N+S ++++ + L Sbjct: 354 LYIINAIRGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANKYDVVSDEEREVFLS 413 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + Y + + + D++++ +++ Sbjct: 414 TLCDSGLEFEYFDYLHPCLNQTLKQVKSNDLIILLGAHAM 453 >gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens] gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens] Length = 483 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 70/457 (15%), Positives = 143/457 (31%), Gaps = 45/457 (9%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81 G V+ I DSR + + F A G DG +I AV GA VV + + Sbjct: 17 DGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYIEKAVASGAAAVVYEPNNLPQGITLPT 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139 +IP + + L ++A + +TG+ GKTT L A + + A Sbjct: 77 AIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136 Query: 140 IGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185 IG+ P L + + + +S + + Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHRVDSLEFS 196 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A+ T + HL ++ A A+ + D + L + + Sbjct: 197 QAIFTNLTLDHLDYHQTMQ--AYGAAKSRLFERSELQWAIINQDDDCQDLMSNVLKTHV- 253 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G +N D + +W + +EV+ + +G N L + Sbjct: 254 KKVTYGMHQNCDVKAIQWNMDITGTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSLLA 313 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + + ++ ++ GR + Q + L+D ++ + +VL + Sbjct: 314 SGYNPEKVVQIMAELKAAPGRM----EIVAQSPYVLVDYAHTPDALE-----NVLITLKQ 364 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416 +GR V G G + + ++ ++ + + Sbjct: 365 IKKGRLWVVFG----CGGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIAC 420 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +P S V + + D++++ K Sbjct: 421 GMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457 >gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius DSM 20547] gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius DSM 20547] Length = 528 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 145/463 (31%), Gaps = 49/463 (10%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----------- 75 + ++ DSR++ P AF A+ G DG F A+ GA LVV + Sbjct: 48 IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107 Query: 76 -ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132 G+ +PV V + AL LA A + ITG+ GKTTT +L L+ Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTTSYVLYNLLAG 167 Query: 133 IKKTYACIGSYNNH---IGVPLTLARMPVDVDFGIFE--------------LGMSHLGEI 175 I S GV R + + E L S G Sbjct: 168 ILGKDKVGLSTTVEVIIDGVGRPAMRTTPEA-PLVQENLRRMVGAGASDAVLETSSHGLE 226 Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 V A+ T + HL +E K ++FE E G N DD + L Sbjct: 227 LHRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFERTE--GPRLANVDDDYGRRL 284 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + +FG S AD+Q+ + + E+ Sbjct: 285 AREFPGS-----LTFGYSPEADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPPLVGDYNA 339 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 + + + L + D +V + G+ R A + Y ++ Sbjct: 340 LNVAGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAHTEVGLEM 399 Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHV 411 ++V +I+ GR I V G E + ++ ++ I G Sbjct: 400 VLTVARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGI---ITTDDPYGEDP 456 Query: 412 LALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + D A H L + + D+++ Sbjct: 457 VTIADEVMAGADPADTHIVVDRREALLEAVAMARENDLLIACG 499 >gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758] gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758] Length = 505 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 70/484 (14%), Positives = 140/484 (28%), Gaps = 54/484 (11%) Query: 5 WTFHDLLQAIQGHS------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58 +T + +Q + V ++ DSR + F KG + +++ Sbjct: 4 YTLQEYANLLQNLRMMKEFYSNGEEEKNVGYLTYDSREVTEGTLFIC-KGAAFKA-EYLD 61 Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116 A++KGA V V +P F VDD+ A+ LA K TI I G+ Sbjct: 62 AAIEKGAIAYVSE---VKYETKEDVPYFLVDDIRKAMPPLAEKFNNAPWKKLTITGIGGT 118 Query: 117 VGKTTTKEMLTIALSSIK--------------KTYACIGSYNNHIGVP-----LTLARMP 157 GK+T+ + + Y + +HI P R Sbjct: 119 KGKSTSAYYMKAIVDDYMEATGGKESAVLSSIDIYDGVIKKESHITTPESVELQEHLRHA 178 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 V+ E+ +S ++ + + I+ H+S + +++ Sbjct: 179 VESGITFAEMEVSSQALKYNRVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIFG 238 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + + D +LK + T + K+ AD + ++ ++ V+ + Sbjct: 239 KSRYGVVNMDADFADRILKESKVCEKVLTFST--KNPEADVYGYEIQKDGHETVFMVKTE 296 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 E G +N L + +L + L R + Sbjct: 297 LFDEEFRLTMPGLFNVENALAVIAASILLEIPKEYMHSGLLRAR----SSGRMELYGSAD 352 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 + Y N S + S + P ++ G+ + DL V Sbjct: 353 KNLIAVVDYAHNKLSFEKLFSSIKDEYPDYN-----IVSIFGCPGKKAFIRRRDLGTVAG 407 Query: 398 LYNISHVWLSGFH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 Y V+L+ + + ++ E + Sbjct: 408 QY-AKKVYLTAEDPGYEPVEQISKEIAQYVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIF 466 Query: 448 VVKS 451 ++ Sbjct: 467 LITG 470 >gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] Length = 492 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 88/459 (19%), Positives = 144/459 (31%), Gaps = 40/459 (8%) Query: 29 GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88 GIS S I P F AI+G DG+ + AV+ GA VV + + L+IPV V Sbjct: 13 GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAP--DRLPPLAIPVAVV 70 Query: 89 DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 D AL LA ++ +TGS GKTT ML + IG+ + Sbjct: 71 PDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGTVRVN 130 Query: 147 IGVPLTLARMPVDV------------DFGIFELGM--SHLGEIRFLTHLVRPHIAVITTI 192 +G +R+ D G+ M S G V ++T I Sbjct: 131 VGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGILTNI 190 Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS--- 249 HL + +AK L + +N DD + A + I + Sbjct: 191 CADHLDFHHTFADYLAAKERFLT-LLGPSPLVVNRDDDHCRRMAALAGGPVIAVSLTGPA 249 Query: 250 --FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 + + K++ + + V G H +N L+ + Sbjct: 250 DVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAAAGLLHG 309 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 D A S F E R + YRC + + NP S+ A + ++ Sbjct: 310 ISPDEIAAAFSSFQGVERRLEIYRCGGF-----TVIDDTALNPGSIDAVFATITTFRYRR 364 Query: 368 EGRRIAVLGDMCEMGEL------SQSFHIDLAEVLSLYNISHV-----WLSGFHVLALKD 416 A+ G ++ E++ + V + L + Sbjct: 365 LVVVNAIRGGRGAAINALNAITMARWQAALPFELIVTASADQVGPADTVTAEERQAFLGE 424 Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 + + L DGD++V+ + Sbjct: 425 LSRTGAAFSFYLDLQTAIQSALQRLYDGDLLVLLGAQGM 463 >gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7] Length = 507 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 69/495 (13%), Positives = 137/495 (27%), Gaps = 68/495 (13%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + I + I++ S+ + F IKG DGH +I A ++GA Sbjct: 3 LKALFERIPAVLCQGSWDTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYIQEAAERGAA 62 Query: 67 LVVVNTDMVAS---------------------IGSLSIPVFGVDDVLGALNKLAVAARLR 105 +V + + V + A A A Sbjct: 63 ACLVEEAFWKKSASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAAWAAAAFYRY 122 Query: 106 SK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP------------- 150 +I ITG+ GKT+T M+ L + +G+ + IG Sbjct: 123 PSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRAERTTPEAID 182 Query: 151 ---LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207 F + E+ S G + + + V T + H+ +++A Sbjct: 183 IQRYLRKMADSGCRFAVMEV--SSQGLKLHRSDSILFDVGVFTNLGRDHIGP-KEHKDMA 239 Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267 +K N DD ++ + + ++ + AD Q + Sbjct: 240 EYAHYKSLLFQKCCFGIGNIDDPYYREI----FKDASCQVCTYSCRQKADVQASDIMLVN 295 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + + E G N + + + D + KAL Sbjct: 296 RNGQLGTFFKVNGEEYAVSAPGEFSVYNAVAAITVCRHYGIDQEIIRKALKTIRVPGRV- 354 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 N + L+ + + + ++L + + + + G G S + Sbjct: 355 ---EVIDNDRGYLLLIDYAHNA----MSLKNILETMRRYHPRQLWVLFG---CGGGRSAA 404 Query: 388 FHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS-----IHVHYSETMDGLFLFIQ 438 ++ V Y V S + + F+ Sbjct: 405 RRREMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKETKGQYQMMVDRKEAMRFML 464 Query: 439 SSLVDGDVVVV--KS 451 + GD++++ K Sbjct: 465 AQGRPGDILILAGKG 479 >gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium marinum M] gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium marinum M] Length = 521 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 78/488 (15%), Positives = 155/488 (31%), Gaps = 58/488 (11%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +L + P + G+++ ++++ P + F A+ G G A Sbjct: 18 LAELAVQVGAVLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHAADA 77 Query: 61 VQKGAGLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 +++GA V+ + V +I +L +PV G L + A T++ I Sbjct: 78 IERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGI 137 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMP 157 TG+ GKTTT ++ L + + IG+ I + A + Sbjct: 138 TGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMVE 197 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 VD + E+ SH + + + R + T ++ HL + + AKA +F+ Sbjct: 198 RGVDTVVMEV-SSHALTLGRVDGI-RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPA 255 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + A T+ + G+ + Q + + Sbjct: 256 SALRGHSVVVCIDDEAGRAMADRAGAAITVSATGQPAHWRATDVAPVGAGGQEFTALDPA 315 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G V G++ N L+ L I+ + + A L Sbjct: 316 GVGHRVRIGLPGHYNVANCLLALAILDAVGVSPEQAAPGLRETRVPGRL----EQVDRGQ 371 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F + + Y P +++ +S L + + R V G G+ + + + Sbjct: 372 DFLALVD-YAHKPGALREVLSTL----RNPQRRLAVVFGA---GGDRDPGKRGPMGRIAA 423 Query: 398 LYNISHVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGD 445 V ++ G A++ + + V + GD Sbjct: 424 EL-ADLVVVTDDNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGD 482 Query: 446 VVVV--KS 451 VV++ K Sbjct: 483 VVLIAGKG 490 >gi|150020386|ref|YP_001305740.1| Mur ligase middle domain-containing protein [Thermosipho melanesiensis BI429] gi|149792907|gb|ABR30355.1| Mur ligase, middle domain protein [Thermosipho melanesiensis BI429] Length = 511 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 17/356 (4%) Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MP 157 A R ++AITGS GKT+TK L +S KT GSYN +G+ + + Sbjct: 159 AKRKIKRLNPEVVAITGSYGKTSTKFYLYHLISEYYKTLMTPGSYNTTMGITKVIREKLD 218 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 D I EL + L LV P I+VIT+I H F I + + Sbjct: 219 KSHDVFIVELAENDNYGFEKLLDLVNPTISVITSIGIQHFEEFENESNILDNFKKYIKDS 278 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 +N+DD + + + + D +L K +++ Sbjct: 279 RSGKKFVVNFDDENIRKIIKNKDIISCGIENKEAQYRIVDLKLDK----DGSNFVLETPN 334 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 + E + G ++L+ + L V+ I+ + R + Sbjct: 335 NQKFEFTTNVYGKENVLDLLLAIVTAFELKVPVEEIIERAKNIVKPKHRL----EVIRDD 390 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 T+ID+++N+NP K L +S G+ R+I + E+GE H L +++S Sbjct: 391 TITVIDDTFNSNPKGFKM---ALEYLSLFGKRRKILITPGFVELGEKEDEEHYKLGKLIS 447 Query: 398 LYNISHVWLSG-FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 Y + V+L + + L S ++ ++D + +++ L GDVV+ Sbjct: 448 KY-VDVVFLVDKKRTKKILEGLEDSNFTGEIYTVNSLDEVTEMLKTFLKSGDVVLF 502 >gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aurantimonas manganoxydans SI85-9A1] Length = 482 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 76/471 (16%), Positives = 144/471 (30%), Gaps = 42/471 (8%) Query: 5 WTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 L + A + G+ +DSR F A+ G DG F+ A Sbjct: 1 MKLSKLAEDLATG----QTTSDPDIAGLCVDSRETGAGFLFAALAGSRADGAGFVADAEA 56 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA ++ + + ++PV D A+ +A ++AITG+ GKT+ Sbjct: 57 RGAAAILA---GEGAEIATTLPVLRAADPRRAIALMAARFHGAQPEHVVAITGTAGKTSI 113 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168 + A +G+ + + + Sbjct: 114 ATFTRQIWARCGLAAASVGTTGVVSPSRDEYGSLTTPDPIALMRLMAELAGEGVTHAAME 173 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + VR A + + HL IE +AK +F L G + + Sbjct: 174 ASSHGIDQRRLDGVRLAAAAFSNLGHDHLDYHPDIESYFAAKMRLFTTLLPKGAPAVIFA 233 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + + + G+ N L++ + ++ E++ +G+ VV Sbjct: 234 DDRWSGRAIDVATSVGAKVMTVGRGGNF-LTLKRLELERQRQIAEIEAEGRIHRVVLPLA 292 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L+ G+ A+ AL GR + +D ++ Sbjct: 293 GEFQMANALVAAGLAIATGVATADALAALEHLKGAAGRLDLAGTTADGA-PVFVDYAHKP 351 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL+ + P GR + V+G G + ++ V ++ Sbjct: 352 EALE-----NVLAAVRPFTTGRVVVVIG----CGGDRDRAKRPMMGEIAARLADIVIVTD 402 Query: 409 FH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + +S GD VV+ K Sbjct: 403 DNPRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVASARTGDTVVIAGKG 453 >gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] Length = 515 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 158/474 (33%), Gaps = 48/474 (10%) Query: 6 TFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + DL + I + V G+++DSR++ P + + A+ G G DF Sbjct: 13 SVRDLALLVSAPADVIDDLDDVAVTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADA 72 Query: 64 GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 GA V+ + D V + + + +PV V+ L +A + T++ ITG+ GK Sbjct: 73 GAAAVLTDADGVERLRAAGVDLPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGK 132 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163 TTT ++ AL ++ + IG+ IG + D D Sbjct: 133 TTTAYLVASALDALGQRTGLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTC 192 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ SH + ++ +++ T ++ HL + +E+ SAKA++F E++ Sbjct: 193 VMEV-SSHALSQHRVDGVL-YDLSLFTNLSQDHLDFHADMEDYFSAKAQLFT-PERSTRG 249 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + DD + L + G++ + + + L+G +E+ Sbjct: 250 LICVDDIWGRRLAEECGIPVTTLTTIEGQTADWVVTVDATEP------ARFALRGTGIEL 303 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + V++L DT ++ G+ + Q Sbjct: 304 DLRSALPGDFNVANTAMAAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSG 363 Query: 344 ESYNANPASMKAAIS-VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + A A+ L+ + P GR + VLG G + Sbjct: 364 LLAVVDYAHTPDAVEAALAALRPTTTGRLVVVLGA----GGDRDRGKRHGMGRAAAGLAD 419 Query: 403 HVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDG 444 V ++ ++ A+ + +G Sbjct: 420 VVVVTDDNPRSEDPAQIRTAVVEGARSIDTTALLVEVGDRRKAIREGVRLAREG 473 >gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris DX-1] gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris DX-1] Length = 485 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 71/469 (15%), Positives = 145/469 (30%), Gaps = 35/469 (7%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 DL A + + G+++DSR++ P + FFA+ G DG F+ A+ G Sbjct: 1 MKLRDLFSA-ETEIAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFVAAAIAAG 59 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A V G L++P + + AL + A R I A+TG+ GKT+ Sbjct: 60 AVAVAGEHP---PAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAVTGTSGKTSVAA 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170 + A IG+ + + L S Sbjct: 117 FTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAGEGITHLALEAS 176 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G +F VR T ++ H+ + +AK +F L + G + D Sbjct: 177 SHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRHLVQDGGAAVIAADH 236 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 ++ + + G++ + + + + + Sbjct: 237 DCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTVAHAGRRYSIKLPLV 296 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 Q + ++ D+A ++ H + G+ ++G +D ++ + Sbjct: 297 GEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVGAHRGAPVFVDYAHKPDA 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 + L + P+ + + + V G G + L ++ + V ++ + Sbjct: 357 LA-----KSLQALRPYAKRKLVVVFGA----GGDRDAGKRPLMGAIAAEHADTVIVTDDN 407 Query: 411 VLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + L GD +V+ K Sbjct: 408 PRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKG 456 >gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586] gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586] Length = 494 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 148/472 (31%), Gaps = 42/472 (8%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 L+ + + P+ + +++DSR A + F A+ G DG +I A+ +G VV Sbjct: 6 LRDVLAPWVNDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65 Query: 71 NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124 D G+L +PV + + L+ LA + +I +TG+ GKTTT + Sbjct: 66 QADDATPDGTLTEMHGVPVIYLAHLNQRLSALAGRFYRQPSTALQLIGVTGTNGKTTTTQ 125 Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170 +L ++ K + N +G + +S Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS 185 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 G ++ + AV T ++ HL + +AK +F + + D+ Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKVINADDEV 245 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 L A+ + S S+ + ++ + + +G Sbjct: 246 GRRWLSRLPDAVAVSVAGSVDSSRARWLKATHIDYHDSGFTVQFDSSWGAGAINSRLMGE 305 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 N+L+ L + L ++ ++A S P GR + + + + +A Sbjct: 306 FNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGRPTVVVDYAHTPDA-- 363 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410 L+ H G V G G L ++ V ++ + Sbjct: 364 -----LEKALAAARLHCRGTLWCVFG----CGGDRDRGKRPLMGAIAEQLADRVIVTDDN 414 Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + L + V DVV+V K Sbjct: 415 PRSEDPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKG 466 >gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 484 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 150/473 (31%), Gaps = 54/473 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L+ + + S +S + Q+ F +G +D H +I A+ GA Sbjct: 5 TLKSFLKQLGA--------LSIRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAITNGA 56 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKE 124 ++ + A S+PVF +L + A K I ITG+ GKTT Sbjct: 57 VAIIATKPISA-----SVPVFVTGSYYQSLLLIKAFYQYPHKKIRHIGITGTNGKTTVAH 111 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGM 169 L L + +++ + G L+ D + EL Sbjct: 112 GLNQVLKTKRQSAYIGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMEL-S 170 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 SH + + VIT I HL ++ AK +I + ++ GT +N DD Sbjct: 171 SHALVQDRAGFVP-LSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAVINLDD 229 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 + ++ + +S + AD + + + QG V Sbjct: 230 HHANVAIERACSRVNVLTFSM-NNSEADLYVEDLNVEPFGATFVLNNQGNKERVFSQLPF 288 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 +N L + L + AL+ +GR K +++ Sbjct: 289 LFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRSKYLSLDNGALALVDYAHNFDG- 347 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407 ++ I R I V+G + + D+ ++ + ++ V + Sbjct: 348 ------LTALYQGIQSQSAKRVITVVGVTGDRIRDA----ADIGKLCATHS-DVVIFTSD 396 Query: 408 ---GFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 G + AL + + + GD+++V K S Sbjct: 397 NPLGEMQEDIFRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGS 449 >gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] Length = 493 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 70/475 (14%), Positives = 138/475 (29%), Gaps = 49/475 (10%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LLQA G + + V + DSR++ P F + G H DGH + + A G Sbjct: 1 MNLCELLQATDGVLLQGDARADVQTLCYDSRAVTPGALFVCLPGLHTDGHAYAVRAAAAG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-----------------K 107 A +V + ++PV V AL +LA+ Sbjct: 61 AVGIVCERPIPG--LPEALPVIQVTHSRRALAQLAIRLYGEPARQLTMIGITGTKGKTTT 118 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFE 166 A ++A + + T + + + + L RM D + E Sbjct: 119 AHLVAAVLTAAGRKVGLIGTNGVRWPGYRHPLDHTTPESSDLQQLLRRMVDAGCDTCVME 178 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S LG + I + T ++P H+ A +A + +N Sbjct: 179 V--SSLGLKMDRVTGIEYDIGIFTNLSPDHIGP-GEHASFAEYRAWKSVLFRRCRVGIVN 235 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD E + + + ++G + AD++ + + + Sbjct: 236 ADDPQTEAILTQH----TCRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTAAGPEGGS 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG--RGKRYRCALNQGFFTLIDE 344 ++ + A + +V R FT++ + Sbjct: 292 REYQLAMPGRFSIYNALAAIAAAGILQLPDTAVQTGLRTAVVEGRVEPVPIHAPFTVVLD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A+ ++L+ + + R I V G G S+ + E + Sbjct: 352 YAHNEAAA----ENLLTTLRAYRPTRLIVVFG---CGGGRSRVRRFGMGEACARL-ADFC 403 Query: 405 WLSGFHVL---------ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447 ++ + ++ L R GD+V Sbjct: 404 IVTEDNSRGEPLADILADIRTGLRRGNPDTPFVEISDRRQALYDALDMARPGDIV 458 >gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus radiodurans R1] gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus radiodurans R1] Length = 490 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 79/482 (16%), Positives = 143/482 (29%), Gaps = 54/482 (11%) Query: 5 WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 DL A+Q + P V G++ ++ + P AF AI+G +DGH F+ A Sbjct: 1 MRLSDLAAALQLPAPETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQA 60 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120 GA V+ +A + +P V + AL A A ++ +TG+ GKT Sbjct: 61 AGAVAVLGE--GLADGQTSPLPYLTVPNARAALADAAAALAGHPSRELKVVGVTGTDGKT 118 Query: 121 TTKEMLTIALSSIK------------------KTYACIGSYNNHIGVPLTLARMPVDVDF 162 TT + L S + + + V TL M Sbjct: 119 TTSWLTRHLLRSAGLATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQ 178 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 SH + + V +AV T ++ HL ++ + K ++ E Sbjct: 179 ATVLEASSHALSLDRV-RGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLVER------ 231 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + A+ + ++++AD++ + ++ V + Sbjct: 232 -ARFAVLNVDDPWTAQLRGIAPGETTYSAENQHADWRAQDIEERHSGLHFRVVSPAGDFQ 290 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 IG N L + L A L+ F GR + + Sbjct: 291 AELPMIGRFNVANALAGMAAAHHLGATALQLQAGLASFRGVPGRMELVPGGATSPRVIVD 350 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 + L + G V+G G L EV + Sbjct: 351 FAHTPPS------LEKALGTLRATTAGHLWVVIGSAG--GPRDPYKRAPLGEVATRL-AD 401 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 H L+ ++ ++ + + GD V++ Sbjct: 402 HAILTEEDCRDTPLQDILNEMERGAREEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLAG 461 Query: 450 KS 451 K Sbjct: 462 KG 463 >gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9] gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9] Length = 495 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 72/475 (15%), Positives = 142/475 (29%), Gaps = 40/475 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63 +LL I G V GI +S + + F I G DG +F Sbjct: 1 MNLRELLAVIDGVEYQGK-DVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAG 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 ++ + + V ++ ++ A K I+ +TG+ GKTT Sbjct: 60 AVAAIISPQAASKTSPTSDALVITASNLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTT 119 Query: 122 TKEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------L 167 T ++ L+ G + ++ + + Sbjct: 120 TTHLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQAVDAGCQLGIM 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S + ++V T + HL +E+ AKA +F G +N Sbjct: 180 EVSSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQGRAVINI 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + L + + +ADF + + + Sbjct: 240 DDQYGQRL--TIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFSSPL 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G + +N+L + V L D++T + + F GR +R + +Q ++D ++ Sbjct: 298 VGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDISVIVDYAHT 357 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + ++L P GR I V G G ++ V ++ Sbjct: 358 PDSLE-----NLLKAARPFIPGRIICVFG----CGGDRDKTKRPKMGRIAADLADVVVVT 408 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +P + GD V++ K Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKG 463 >gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetospirillum magneticum AMB-1] gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magneticum AMB-1] Length = 478 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 88/450 (19%), Positives = 160/450 (35%), Gaps = 34/450 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + G++ DSR++ P F A+ G DG FI A+ + V+ + + Sbjct: 9 DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAA-GAVAVLAPEGSRPDLPPEV 67 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--- 140 + + +A A + A+TG+ GKT+T E ++ + A I Sbjct: 68 VLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAAAAIGTL 127 Query: 141 ----GSYNNHIGVPLT-----LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVI 189 ++N G+ A + + G+ M S G + VR A Sbjct: 128 GITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGVRLMAAAF 187 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T + HL + + A AK +F + G + DS + A T+ Sbjct: 188 TNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGITVLG 247 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ D +L + + + +++++ G+++ + G A N L LG+ AD Sbjct: 248 FGR-TARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACGAD 306 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 A++AL GR ++ N +D ++ + VL + PH Sbjct: 307 PVAALEALGHLDGVPGRLQQVASRANGA-PIYVDYAHTPDALET-----VLKALRPHAAR 360 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH- 423 R +AV G G + L + + ++ A++ A+ + Sbjct: 361 RLVAVFG----CGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPA 416 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 G S L GDV+V+ K Sbjct: 417 GIEIADRRGAIRAAVSGLQKGDVLVIAGKG 446 >gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] Length = 481 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 80/487 (16%), Positives = 153/487 (31%), Gaps = 67/487 (13%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ G + IS DSR + FF +KG H+ Sbjct: 1 MIKIETILDILKKDQNFREIIADGDYYFNYQDLTFDKISYDSRKADSRTLFF-VKGEHFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110 +F+ AV G G + TD+ + IPV V+D+ A++ +A+ K + Sbjct: 60 -REFLEKAVAAGLGFYLSETDL-----EVGIPVLLVNDIKQAMSLIAMEFYGHPEQKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169 +A TG+ GKTT L K G + + +FE+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFKSTLTTPESLDLFEMMAQ 173 Query: 170 -------------SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214 S ++ + + + V I+P H+ E+ K + Sbjct: 174 AVANARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + +N F++L + G + Q ++ + + Sbjct: 234 DNSR---AVVVNSGMDHFQVLAEQVANYGHDFYGPDSANSILQSQAFSFEAQGKLAG--- 287 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 + I N + + + G+ Sbjct: 288 ----------SYDIQLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQTRVPGRMEVLTQ 337 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + G +D ++N + + +LS + H +G+ + VLG GE + D Sbjct: 338 SNGAKVFVDYAHNGDSLA-----KLLSVVQEHQKGQTVLVLGATGNKGESRRK---DFGL 389 Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSS-LVDGDV 446 +L+ + V L+ +A+ + I + S +GD Sbjct: 390 LLNQHPEIKVILTADDPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDA 449 Query: 447 VVV--KS 451 V++ K Sbjct: 450 VILAGKG 456 >gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 484 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 79/479 (16%), Positives = 145/479 (30%), Gaps = 56/479 (11%) Query: 5 WTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 LL I+G + + + V I+IDSR+I + FFA +G D H F Sbjct: 1 MKVSQLLDGLSIKGFDLDVDFETDVKDINIDSRNIKRKAPFFAFQGAAVDSHKFAAEVYA 60 Query: 63 KG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 G VV + +P V+D AL + + IA+TG+ GK Sbjct: 61 SGKVPFVVAEHKIE------GVPTVVVEDGRKALARACRNFFGKPDEEMDSIAVTGTNGK 114 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFG 163 TTT ++ L + + +G+ D Sbjct: 115 TTTTYIINEILKTAGRKSVLVGTTGVKYDDKFIYMDSTTPPTYEFFKVLRDAKDAGCDTL 174 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + E+ SH + +V +A+ T ++ HL ++E AK +F + Sbjct: 175 VMEV-SSHALHQHRINGVV-FDVAIFTNLSGDHLDYHKTMDEYFEAKKILFTPEYSRVGV 232 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + LLK S+G + ++ + + S+E+ Sbjct: 233 IGKDSEFGERLLKEAEVDR-----VSYGITNKSEITAEEIWFGLSGLRAKFVYPAGSIEM 287 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G H +N++ +L D + GR +++ + F Sbjct: 288 ESSLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKFEKSNGAYIFVDFA 347 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + +A +VL + E R I V G G + + Sbjct: 348 HTDDA-------LKNVLEALGSFKENRVITVFG----CGGDRDRSKRPRMAKTAELDSDV 396 Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + + V D+V++ K Sbjct: 397 VIVTSDNPRTEDPQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKG 455 >gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema brennaborense DSM 12168] gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema brennaborense DSM 12168] Length = 557 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 61/524 (11%), Positives = 128/524 (24%), Gaps = 90/524 (17%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI--------- 57 LL Q + G + I DSR++ FFA+ G H G+ FI Sbjct: 5 LSQLLTGFQHETAGGSSDPIITDICFDSRAVRAGSLFFALPGTHVHGNAFIAKAIARGAA 64 Query: 58 ---------LHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSK 107 A+ PV V D A++ A A Sbjct: 65 AIVYQDDLPEDAL----------RAAEERNNEAEAPVLVRVRDARFAMSPAADAFYDSPS 114 Query: 108 AT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--------------VPL 151 +I +TG+ GK++T + L K I + +G P+ Sbjct: 115 EKLAVIGVTGTEGKSSTVSFIWQLLGLCGKKAGFISTVQYSLGDDAIANPEHQTTPEAPI 174 Query: 152 TLARMP----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI- 206 ++ ++ + E L VR V + HL E+ Sbjct: 175 VQRQLYEMVQNGCEYAVVESSSHGLSRKTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYK 234 Query: 207 -----------ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 A + G + F + ++ G + Sbjct: 235 SDKANLFRALDAHDHLKTIGGTRRRVPAFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAG 294 Query: 256 ADFQLRKWKQC--------------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + + + S+ + + + Sbjct: 295 KNADIPLPEIPAEIPRFSADRVAAKSDGIAFTANVPPSDTIRATAPDPVAVTAPLPGAFN 354 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + ++L + + + F + + + + + + S + Sbjct: 355 VYNVLASLITVSTITGIPFARVAEKCPQLQPVKGRMTVIDKGQPFEVIVDYAHTPSSFET 414 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413 P + R ++ GE + + + + V L+ A Sbjct: 415 IFPPLRKRARNRIIVLFGSGGERDTKKRPEQGRIAARW-CDVVILADEDPRAEDPAALLE 473 Query: 414 -LKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + + +GD+V++ Sbjct: 474 MIAAGCRSAGKTEGNGLYVVPPRPQAIRKAFALAAEGDIVLLLG 517 >gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 81/490 (16%), Positives = 139/490 (28%), Gaps = 64/490 (13%) Query: 4 LWTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF------ 56 + LLQ + + V G+++DSR I P F A++G + G + Sbjct: 1 MMRLRTLLQPWLD---LTDADDRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALA 57 Query: 57 -------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-- 107 A V D + +P+ V D+ L +A Sbjct: 58 AGAGAVLWEPAGD-----VAPEPDERTAAERAGVPLIAVPDLGRRLGPIAARLYGDPSAR 112 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF----- 162 ++ +TG+ GKT+ + L L +G+ + G P +L Sbjct: 113 MRVVGVTGTDGKTSVTQYLAQLLDREAHRCGLVGTLGS--GFPDSLQPGTHTTPDAASVQ 170 Query: 163 -----------GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 + +S + VR H AV+T + HL + A AK+ Sbjct: 171 RTLARLHRQGAAQVAMEVSSHALDQHRVAGVRFHTAVLTNLGRDHLDYHGDLAGYAEAKS 230 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 + G+ LN DD+F + YS A + + Sbjct: 231 RL-FGVPGLQWAVLNLDDAFGRQVHGALAGGTRALGYSLAGHPQAGVRGEGLVLEPQGLR 289 Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 + + + V +G A N+L L + ++ L+ P GR + + Sbjct: 290 LRLSTEWGEAPVQAPLLGAFNAANVLAVAAAALSLGVALPVIVERLAGLRPVPGRMEPFT 349 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391 + A L+ + H G V G G Sbjct: 350 RPGRPSVIVDYAHTPAA-------LRGALAAVRAHYRGAVWLVFG----CGGDRDRGKRP 398 Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVD 443 L + V L+ + D + + G Sbjct: 399 LMGEAAAELADRVVLTDDNPRREDPDRIIDDIRQGAPGRDWPVLRDRAGAIRHAVERAGP 458 Query: 444 GDVVVV--KS 451 DVV+V K Sbjct: 459 EDVVLVAGKG 468 >gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Hippea maritima DSM 10411] gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Hippea maritima DSM 10411] Length = 459 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 75/444 (16%), Positives = 145/444 (32%), Gaps = 50/444 (11%) Query: 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90 DSR ++ FFAIKG D + F+ + + K ++VV+ + VDD Sbjct: 16 VYDSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSENGFD-----DERCIKVDD 70 Query: 91 VLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK-----TYACIGSY 143 V + A K ++ ITG+ GKTTT +L + + + Sbjct: 71 VRKCMGLAADHFFNHPSKKLKVVGITGTNGKTTTTYLLRSIFDNSEIIGTTGWTLKDERF 130 Query: 144 NNHIGVPLTLARMPVDVDFGI-----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 + P +L + + +S V + V T I+ HL Sbjct: 131 KLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTNISQDHLD 190 Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258 + +E A K F E+ +N DDS+ +L + S+G S A Sbjct: 191 FYDNLENYAKTKLSFF---ERLKPKVVNADDSYGRMLIDAA-------TISYGFSDFAFI 240 Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + ++ + ++ + +++ + IG + N++ LG+ D + ++ Sbjct: 241 KPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDFARIEEGIA 300 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 GR + ++ Y +M+ + L++I +GR I V G Sbjct: 301 KSKGAPGRLEFFQKDGA-----YAVVDYAHTDDAMRNVLEALNKIK---KGRIITVFGA- 351 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSET 429 G ++ V ++ + + + + V Sbjct: 352 ---GGDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPD 408 Query: 430 MDGLFLFIQSSLVDGD--VVVVKS 451 GD ++ K Sbjct: 409 RFEAIKKALGMAEKGDLVTILGKG 432 >gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter propionicus DSM 2379] gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter propionicus DSM 2379] Length = 536 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 85/501 (16%), Positives = 149/501 (29%), Gaps = 71/501 (14%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL A+ H + + ++ DSR I P FFA++G DGHDFI AVQ G Sbjct: 24 MKLTQLLAALDSHDLHGDGAVEIKALTCDSRGIVPDSLFFALRGAAMDGHDFIPAAVQAG 83 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122 A VV+ + A +IP V D A+ +A + +I ITG+ GKTTT Sbjct: 84 AVAVVLEDESRA---PAAIPWVRVRDGRSAMAWMAAEFHGNPTSRLPLIGITGTNGKTTT 140 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166 ++ L + A +G+ + G + A + E Sbjct: 141 TYLIEAILRAAGIPAAVLGTISYRFGDTVITASHTTPESTELQAAFTQLAAAGAKAFVME 200 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIF 224 + SH E + + + + + + HL +E A + Sbjct: 201 V-SSHALEQKRVDGCH-FDVGIFSNLTRDHLDYHVTMESYREAKLRLFSELLKPTADKPL 258 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + A A + +G D + + + + S++V Sbjct: 259 RRAAINMDDEQGATVAARAACPVIGYGI-CRGDVRAEELSLSVDGIRARLVTPKGSIDVS 317 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G N+L + L ++ + GR N+ TL+ + Sbjct: 318 SRLLGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGR---MERVDNRCGITLLVD 374 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A +VL+ + +GR I V G G + ++ Sbjct: 375 YAHTGDA----LENVLTTLKELAQGRIITVFG----CGGDRDPGKRPIMGRIAASMSDLA 426 Query: 405 WL------------------------------SGFHVLALKDALPRSIHVHYS--ETMDG 432 + L + E Sbjct: 427 IVTSDNPRTEDPFSILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRRE 486 Query: 433 LFLFIQSSLVDGDVVVV--KS 451 GD+V++ K Sbjct: 487 AISLAVRLARPGDIVLLAGKG 507 >gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] Length = 481 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 80/505 (15%), Positives = 151/505 (29%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +F++ A+ +G G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEFLISAISQGLGWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154 +A TG+ GKTT LS T G + Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + + E+ S + + + + V I P H+ E+ K Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + +N D F +LK + S ++ + + + + + Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVENQDHDFYGSQSSNQIENSKAFSFSATGKLAGD 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + G+ Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G ID ++N + +++ + H G+ VLG GE + D Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ + D + + V + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y+++ E +P Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEAYP 471 >gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 350 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 17/252 (6%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 SR + P + + AI+G DGH FI AV +GA VV D +P V Sbjct: 6 SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDVPYVRVTSARR 65 Query: 94 ALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-- 149 A + L+ T++ +TG+ G TT+ LT L + S N G+ Sbjct: 66 AASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNETGLRT 125 Query: 150 ----------PLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHL 197 P + VD G + S G ++ T V +A+ T + HL Sbjct: 126 VPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLTREHL 185 Query: 198 SNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256 +E A+AKA +F G + LN DD + +++ A + G + Sbjct: 186 DFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENCVAPIVTYGVRSGDVRGR 245 Query: 257 DFQLRKWKQCSE 268 + R + Sbjct: 246 GERDRGKRPEMG 257 Score = 37.9 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 11/100 (11%) Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK-DALPRSIHVHYSE-- 428 GD+ GE + ++ + + + + + + L + VH + Sbjct: 240 GDVRGRGERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCD 299 Query: 429 ---TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 D DV+++ ++++ L Sbjct: 300 VVLDRAQAIERAVIEANDEDVILITG-RGHESFQVVGGLR 338 >gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] Length = 503 Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 143/463 (30%), Gaps = 46/463 (9%) Query: 27 VNGIS------IDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + GI DSR I FFA +G DG ++I A++ GA VV + Sbjct: 14 IKGICPNGQLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESSDFEWN 73 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + GV + +A A +IIA+TG+ GKT+T + + ALS + + Sbjct: 74 PDWKVDHLGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSRLGRK 133 Query: 137 YACIGSYNN---HIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRF 177 A IG+ G + + S +G + Sbjct: 134 TAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGIDQG 193 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + + IA+ T HL + A G + +N DD+ L + Sbjct: 194 RLNGLTIDIALFTNFTRDHLDYHHDM-ASYKAAKRRLFGWKGLKHAVVNLDDAMGIELAS 252 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + T YS AD + ++ + N+ Sbjct: 253 ELKSKMALTGYSI-NGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFNVS 311 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 LG++ +L A+ A+ R + + ++ + + P +++ + Sbjct: 312 NVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMGGKEAPLVVID-FAHTPDALEKGL 370 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412 S L ++ G+ + G G+ ++ E + ++ Sbjct: 371 STLRHVADDRNGKLWCIFG---CGGDRDHGKRPEMGEKAESA--DVIIVTSDNPRSEDPK 425 Query: 413 ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + E L DV+ V K Sbjct: 426 KIMEEIVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKG 468 >gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 495 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 75/478 (15%), Positives = 144/478 (30%), Gaps = 44/478 (9%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LL + + V G+ +DSR +AP +AF AI G G F+ A Sbjct: 1 MSRSMALSQLLPDV-----ALPHDVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQA 55 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118 GAG V+ + + V + L +A R ++ +TG+ G Sbjct: 56 HANGAGAVLFE-PPAPNGMPVPADAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114 Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164 KT+T ++L AL+ + + + +P + + Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQA 174 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + V +AV T + HL + + +AKA++F + Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVV 234 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D L + AL + S AD + + + + L + Sbjct: 235 NLDDAFGRTLFASLDPALRAIGVSS---RAQADASVSAQALQLDHNGINFALNIQGEVHP 291 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H + ++ ++ A A + + G+ R G ++ + Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A LS + H + R I V G G + ++ N Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + R D+V++ K Sbjct: 404 IVTDDNPRSEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGMASASDIVLIAGKG 461 >gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] Length = 476 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 85/409 (20%), Positives = 137/409 (33%), Gaps = 28/409 (6%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 G V G +ID R +AP F A +G +G DFI AV+ GA VV Sbjct: 10 ITGEGGDALVTGFAIDHRKVAPGTIFGAFQGARVNGEDFIADAVRSGAIAVVT----RPG 65 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + D+ A +LA A AT +A+TG+ GKT+T EM Sbjct: 66 VTVEGAVHIASDEPRAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMTRQLWRMAGHHA 125 Query: 138 ACIGSYN------------NHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVR 183 A IG+ V L+ + G+ L S G ++ T + Sbjct: 126 ASIGTLGVTTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSHGLTQYRTEGLE 185 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 A T ++ HL + +AK +F + + + D Sbjct: 186 VSAAAFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQSGRVIDLARAR 245 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + + G + + + Q + G +V IG + A N L++ G+V Sbjct: 246 GNRLMTVGTRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQAANALVSAGLV 305 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 DV T + LS P GR G +D ++ + ++ + Sbjct: 306 LATGGDVTTTLANLSRLQPVRGR-LERAAIARSGAPVYVDYAHTPDALEA-----AIAAL 359 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 PH GR I V G G + ++ V ++ + Sbjct: 360 KPHAGGRLIVVFGA----GGDRDPGKREAMGQVASMQADRVIVTDDNPR 404 >gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] Length = 500 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 69/464 (14%), Positives = 132/464 (28%), Gaps = 41/464 (8%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V+ ++S ++ P F A+ G G F A ++ + + + Sbjct: 3 GDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AAAILTDAEGKRILND 59 Query: 81 LS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136 P+ V+D+ L ++ K TI+ +TG+ GKTTT +L L + Sbjct: 60 AGEKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYS 119 Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLV 182 IG+ I + + E + +S Sbjct: 120 VGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGT 179 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 R + T ++ HL +E+ AKA +F+G + + DD + + ++ A Sbjct: 180 RFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVICVDDEWGRRMAQRAAAR 239 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + + +AD R+ + M + Sbjct: 240 PVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIA-NA 298 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-YNANPASMKAAISVLS 361 I+ E R + Y PA++ A + L Sbjct: 299 ALATGMAASIGIEPQVFLEGVEKVAVPGRMERVDRGQDFVAVVDYAHKPAAIAAVLETLR 358 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 GR V+G G S L + V ++ + Sbjct: 359 TQLEGSAGRIGIVVGA----GGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRA 414 Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 A + + + + + GD V+V K Sbjct: 415 AVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKG 458 >gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 517 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 139/356 (39%), Gaps = 14/356 (3%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPV 158 + ++ ITGS GKT+ K + LS + S+N +G+ + + Sbjct: 159 KKYKEEEGLKVLGITGSFGKTSVKFISDTILSEGLRVKNTPSSFNTPMGLSKIINNELER 218 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 D + I ELG GEI + LV+P I +IT I P H+ F IE I K E+ E L Sbjct: 219 DREVFIAELGAKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKTKYELIEDLP 278 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + G NYD+ + + L K+ Y +G + + ++ E L Sbjct: 279 EDGIAIFNYDNDYVKPLADKTKK----KTYRYGTKDFDKLDVYADEIKVNETGSEFVLHI 334 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 K + N+ L + + + E R + Sbjct: 335 KGGGEIKCSTRLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVEHRLSLIPSSNN 394 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 +ID+++N+NP +AA+ VL + H + I + M E+G++ + + + +V++ Sbjct: 395 TIVIDDAFNSNPVGFRAALDVLREFKDHRK---IIITPGMVELGDMEEEENRKIGQVMAD 451 Query: 399 YNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 + L G L + + L ++ ++D + + GDVV+ Sbjct: 452 V-LDFAILVGKKRTLPIYEGLKDKNFDEEKIYRVSSLDEATKVLAKISMAGDVVLF 506 >gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 511 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 77/361 (21%), Positives = 137/361 (37%), Gaps = 16/361 (4%) Query: 96 NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155 + + ++ ITGS GKT+ K + LS + S+N +G+ + Sbjct: 149 QEKIRNYKENYDLKVLGITGSFGKTSVKFISNTILSEGLRVKNTPSSFNTPMGLSKIINN 208 Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 + + I ELG GEI + LV+P+I +IT I P H+ F I+ I + K E+ Sbjct: 209 ELENTTEVFIAELGAKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNIQNTKYELI 268 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME- 273 E L + G NYD+ + + L K+ Y + D S Sbjct: 269 EMLPENGVAIFNYDNDYVKPLADKTEIK--TIRYGIKDVEKLDVYATDISVDEMGSKFIL 326 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 + +E +G H N+L IL ++ + P E R Sbjct: 327 HIRELGEIECESKLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVEHRLNI---V 383 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + +ID+++N+NP + L IS +GR+I + M E+G++ + + + Sbjct: 384 NSNSGVIVIDDAFNSNPIGF---RAALDVISEFKDGRKIIITPGMVELGDMEEEENYKIG 440 Query: 394 EVLSLYNISHVWLSG-FHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVV 448 ++ V L G + L + +V +++ + DVV+ Sbjct: 441 FEIAKT-CDFVILVGKKRTAPIYRGLEDAKYNLENVFRVNSLNEATQVLGHLSAPKDVVL 499 Query: 449 V 449 Sbjct: 500 F 500 >gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1087-00] gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1087-00] Length = 481 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLVWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154 +A TG+ GKTT LS + G + Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + D I E+ S + + + + V I+P H+ E+ K Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + +N D F +LK + S + + +++ Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + IG +N + L A ++ K ++ + Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 ID ++N + +++ + H G+ VLG GE + D Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ D + + V + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y++I E +P Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471 >gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP19-BS75] gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CGSP14] gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS455] gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP-BS293] gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS292] gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS397] gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS457] gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS458] gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP19-BS75] gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CGSP14] gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae INV200] gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS455] gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS292] gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP-BS293] gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS458] gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS457] gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS397] gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA41301] Length = 481 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154 +A TG+ GKTT LS + G + Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + D I E+ S + + + + V I+P H+ E+ K Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + +N D F +LK + S + + +++ Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + IG +N + L A ++ K ++ + Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 ID ++N + +++ + H G+ VLG GE + D Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ D + + V + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y++I E +P Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471 >gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae ATCC 700669] gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae JJA] gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae ATCC 700669] gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae JJA] Length = 481 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154 +A TG+ GKTT LS + G + Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173 Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 + D I E+ S + + + + V I+P H+ E+ K Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + +N D F +LK + S + + +++ Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVKDQDHDFYGS----------QFDNQIENSKAFS 278 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 + + IG +N + L A ++ K ++ + Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 ID ++N + +++ + H G+ VLG GE + D Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444 +L+ + V+L+ +A+ D + + V + Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447 Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469 D V++ Y++I E +P Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471 >gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP11-BS70] gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae MLV-016] gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae AP200] gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP11-BS70] gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae MLV-016] gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae AP200] Length = 481 Score = 97.2 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 147/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL KS A +S K + D + + + S G Sbjct: 228 HKRLLMEKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC 27244] gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC 27244] gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter haemolyticus ATCC 19194] Length = 499 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 75/461 (16%), Positives = 142/461 (30%), Gaps = 55/461 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 G S+DSR + + F A+ + F +A+ GA V+ + + Sbjct: 21 PFQGFSLDSRKVEKGQIFIALSSYSQPEKT--RQFAQNALDAGALAVISEATLGVTNE-- 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTY 137 + DV + + +A+TG+ GKTT ++ L S + Sbjct: 77 ----WVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLI-AELISSQGKG 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGMSHLGEIRFLTHLV 182 + + +P +D L S G + + Sbjct: 132 CAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQGRLNGC 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IAV + ++ HL +E A AKA +F+ + D +L A Sbjct: 192 DLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLKAVVINLDDAYAQLMLDAAKANP 251 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 I ++ ++ A + L VH + H L+ I Sbjct: 252 SQPKILTYSLTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFNVENLLASLI 311 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + + + +G R + + ++D ++ + I VL+ Sbjct: 312 AAECAGFDLADL--VEFVPQLQGAPGRMQVIQDANRLFVVDYAHTPDA-----LIQVLTT 364 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413 + H G+ AV G G L +L + + V L+ + Sbjct: 365 LKRHVTGQLWAVFG----CGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQAQIFAD 420 Query: 414 LKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451 +K + + H+ H F+ + GD+VV+ K Sbjct: 421 MKQGMNFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKG 461 >gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter radioresistens SH164] gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter radioresistens SH164] Length = 499 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 148/475 (31%), Gaps = 55/475 (11%) Query: 12 QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKGAGLV 68 + G++ +G +DSR + + F A+ + F +A+ +GA + Sbjct: 7 EIYPGNANVEWANQPFSGFCLDSRKVQAGQIFIALD-SLSHSNKTRIFAENALSQGALGI 65 Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKE 124 + +D+ + + V + ++ I+A+TG+ GKTT Sbjct: 66 ISESDLGVTTA------WVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTISR 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGM 169 ++ L S +K + + +P +A +D L Sbjct: 120 LI-AELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEA 178 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 S G + IA+ + ++ HL + A AKA +F+ + DD Sbjct: 179 SSHGLEQGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFKFATLRSAVINLDDD 238 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 +L+ I ++ D+++ E + ++ V + Sbjct: 239 YAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLL 298 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G +N++ +L V + + + GR + R + + + Sbjct: 299 GQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDVER----LFVVDYAHT 354 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 A VL + H + + A+ G G L +L + V L+ Sbjct: 355 PDA----LTQVLVTLKRHVQNQLWAIFG----CGGDRDRGKRPLMTQAALNDADPVILTS 406 Query: 409 FHVL-----ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + + + HV + GD+VV+ K Sbjct: 407 DNPRTESPEQIFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKG 461 >gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae TIGR4] gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae TIGR4] gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TIGR4] Length = 481 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 147/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL KS A +S K + D + + + S G Sbjct: 228 HKRLLMEKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 545 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 61/482 (12%), Positives = 137/482 (28%), Gaps = 53/482 (10%) Query: 7 FHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 H+L + ++ + +++R +AP F A+ G G F A + Sbjct: 19 LHELARIAGADVASSADNGWAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQF---AAE 75 Query: 63 KGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV--- 117 A ++ + + + + + PV VDDV L +++ + I + Sbjct: 76 SPARAILTDREGLDIVEAAGDRRPVLVVDDVRAVLGEVSAHVYGHPSRRMTLIGVTGTSG 135 Query: 118 --------------GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 + T + + + ARM + Sbjct: 136 KTTTTYLLERGLIAAGAQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAAEGVTH 195 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + + +S A T ++ HL +++ AKA F+ Sbjct: 196 VV-MEVSSHALSLGRVDGTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSPVAAS 254 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A + + G+ + + +E+++ G++ E Sbjct: 255 ASVVCVDDEWGERMAELASHPLRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQTHEF 314 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N + + ++ AD+ ++ L R Q F ++D Sbjct: 315 TLPLPGAFNVANAALATALARVVGADMPQFVRGLENAAVPGR---MERIDAGQDFVAVVD 371 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 ++ + VL + +GR +G G + + + Sbjct: 372 YAHKPAAIAA-----VLETLREQVDGRIGIAVGA----GGDRDTTKRAVMGQQAATRADL 422 Query: 404 VWLSG-----FHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 V ++ A++ A + + + + GD +VV Sbjct: 423 VIVTDDNPRTEDPAAIRAAVLRGAREAGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVG 482 Query: 450 KS 451 K Sbjct: 483 KG 484 >gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae Taiwan19F-14] gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TCH8431/19A] gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae Taiwan19F-14] gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TCH8431/19A] gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA04375] Length = 481 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 146/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS T G + + +F++ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQ 173 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + R + A + + ++ + + Sbjct: 174 AVKNGRSHLVMEVSSQAYLV------HRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri DSM 4166] Length = 487 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 74/466 (15%), Positives = 163/466 (34%), Gaps = 43/466 (9%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 + + +++DSR + + F A+ G +DG D + A+ +GA V ++ Sbjct: 5 LNYLLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESE 64 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 + + + + V + G L+ +A ++ +TG+ GKT+ +++ AL Sbjct: 65 GLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALD 124 Query: 132 SIKKTY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 + + + + IGV TLA++ + + + +S G + Sbjct: 125 RLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVA-MEVSSHGLDQ 183 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + +AV T ++ HL +E +AKA + G+ +N DD F L Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARL-FGVPGLSCRVINLDDGFGRALA 242 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 + + + + +A + + + + + +G N+ Sbjct: 243 GEERESRLISY--SLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNV 300 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L +G + + +D + L GR R ++D ++ + Sbjct: 301 LAAVGALLGMDYPLDEILAVLPELEGPAGR--MQRLGGGDRPLVVVDYAHTPDALE---- 354 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412 VL+ + PH GR + + G G + L ++ V ++ + Sbjct: 355 -KVLTALRPHARGRLLCLFG----CGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAP 409 Query: 413 -----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ V + + + ++ DVVV+ K Sbjct: 410 ERILDDVRSGFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKG 455 >gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] Length = 541 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 79/491 (16%), Positives = 160/491 (32%), Gaps = 56/491 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + V GIS+DSR+I P + + A+ G G F AV GA Sbjct: 25 LTELARFCGIEL---DSKLQVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAV 81 Query: 67 LVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 ++ + + ++ +PV GV + LA R + +TG+ GKTTT Sbjct: 82 AILTDRAGAQIASAEVPQHVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTS 141 Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167 ++ L++++++ IG+ G L ++ + E+ Sbjct: 142 YLIRSILAALERSSGLIGTIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEV 201 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 SH + LV +A T + HL + E A+ KAE+F + Sbjct: 202 -SSHALAYGRVDGLV-FDVAGFTNLTQDHLDLHGTMAEYAATKAELFSSRRSKRAVVTVD 259 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--------KQCSEQSWMEVQLQGK 279 D + + A++ ++ ++ D + E E + Sbjct: 260 DQ-WGRQIAARADVPVLRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAER 318 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 S + G N + + +V D +AL P ++Q Sbjct: 319 SFKFTTSLPGEFNIANSALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLISQEPV 378 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 ++D ++N + +++ A+ + + GR I V G + + L+ Sbjct: 379 AVVDFAHNPD--ALQRAMDAVRPNNNETRGRLITVFGATGQ----RDQTKRPIMGALAAR 432 Query: 400 NISHVWLSGFHV---------LALKDALPRSIHVHYSET-------MDGLFLFIQSSLVD 443 V ++ + D +++ +T + Sbjct: 433 GSDVVIITDDDPHDEDPEQIRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGK 492 Query: 444 GDVVVVKSSNS 454 D +++ Sbjct: 493 DDAILIAG-RG 502 >gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] Length = 498 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 152/481 (31%), Gaps = 52/481 (10%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFILHAV- 61 L + ++L +G+ D R + P++ F A+ G +D + + Sbjct: 6 LHSVSEVL----AELHERGFYADCSGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLT 61 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119 ++ GLV+V+ S V V + L LA TIIA+TG+ GK Sbjct: 62 EQRCGLVLVD--YDDQRAYQSASVLPVLHLKTMLADLAFGYYETPSDAMTIIAVTGTNGK 119 Query: 120 TTTKEMLTIALSSI----------------KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 TT L +L+ + + + + +GV L + Sbjct: 120 TTVTRWLAQSLNQLGKKAAVIGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDT 179 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + + S +G + V +A+ T ++ HL + +K + + Sbjct: 180 VC-IEASSIGLEQRRLACVSIDVALFTNLSQDHLDYHGDMAAYGRSKMILASWPTLRLAV 238 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D E L + G AD Q+ + +E+++ G ++ Sbjct: 239 VNADDSFGVEFLA--HVQHRNIDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQI 296 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 IG A NM + + L D +AL+ P GR + + Sbjct: 297 DTPIIGEFNADNMALVFATLVRLGYDASEVKRALAGVTPAPGRMQHIEGEP------AVV 350 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P +++ + L + G+ V G G L ++ Sbjct: 351 VDYAHTPDALEKTLLALRPFANKRMGKLWVVFG----CGGDRDRSKRPLMGAAAVAKADF 406 Query: 404 VWLSGFHVLA-----LKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450 V L+ + + + + I ++H F DVV++ K Sbjct: 407 VVLTSDNPRSEKPETILQEIIAGIDAPLQNNIHVEVDRPVAIEFAVRKANAQDVVLLAGK 466 Query: 451 S 451 Sbjct: 467 G 467 >gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP3-BS71] gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP3-BS71] gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae OXC141] Length = 481 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 76/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLCLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] Length = 505 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 150/485 (30%), Gaps = 54/485 (11%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 L + D + A + P V G+SIDSR++ P+ F A KG + ++ A+ Sbjct: 9 TTLSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGPEALF-ACKGAAFKP-AYLEDAL 66 Query: 62 QKGAGLVVVNT--DMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSV 117 GA + + + S + + DD+ A A R + I+ ITG+ Sbjct: 67 NAGAAAYLCDESSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTK 126 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVD 161 GK+TT +L ++ + IGS G Sbjct: 127 GKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFNTAESGRK 186 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEK 219 + E+ SH + L+ +A I H+S E+ ++K IF+ Sbjct: 187 HLVMEV-SSHALKYDRTLGLM-LDVACFLNIGRDHISPSEHPSFEDYFASKLRIFDQCRT 244 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG 278 + + + + +FG AD+ R + C + ++ +G Sbjct: 245 AVVNLDSDLVDEVLEHARR-----AERLLTFGVDRPEADYSARDVRPCRDGIAFDLACEG 299 Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 + + G A+N L + + I + L+ + Sbjct: 300 GARPMTLGMAGLFNAENALAAIAMARIAGIGFEDIASGLAHVRVPGR----MEVVRSAAG 355 Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398 T+ Y N S K + + H + +AV G ++ ++ Sbjct: 356 STIALVDYAHNELSYKTFFTSVR--KEHLAAKVVAVFGAPG----DKAFERREVLPRVAA 409 Query: 399 YNISHVWLSG-----FHVLALKDALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV-- 447 ++ + A+ + L + + + + D V Sbjct: 410 QFADYLIYTEEDPAHEDPRAIAEELAANTPADTPCEIIVDREQAIIRAFEVAGENDAVVC 469 Query: 448 -VVKS 451 + K Sbjct: 470 LLAKG 474 >gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 431 Score = 96.5 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 72/410 (17%), Positives = 135/410 (32%), Gaps = 31/410 (7%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + + + GI+ DSR++ P + + A+ G + G DF A GA Sbjct: 32 LGELAARLG---VQTPGAAEITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAA 88 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +PV ++ G + +LA I ITG+ GKTTT Sbjct: 89 AVLTDESGAERAAATGLPVLVTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTTTAY 148 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182 ++ L + ++ IG+ IG + P D M G + Sbjct: 149 LVEGGLKAAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAMEVS 208 Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 IAV ++P H+ S +E+ AKA++F ++ +N+DD Sbjct: 209 SHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFT-PRRSREAVVNFDDE 267 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290 + L + A T +S +AD++ + + S + Sbjct: 268 YGRRLVDE--ATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPLPG 325 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 + + + A G R + + + + Sbjct: 326 PFNVANTLAAVVTLAVA--GLDPQTAADGIAAVPGVPGRLERVDAGQPYLAVVDYAH--- 380 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 A SVL + +G+ VLG G+ ++ + + Sbjct: 381 -KTDAVESVLRSLRKVTKGKVHIVLG---CGGDRDRTKRGPMGAAAARNG 426 >gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Amycolatopsis mediterranei U32] gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Amycolatopsis mediterranei U32] Length = 514 Score = 96.5 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 84/486 (17%), Positives = 159/486 (32%), Gaps = 57/486 (11%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 PL T L +A I P V G ++ ++ + P + F A+ G G DF Sbjct: 17 PLATL--LARA-DARLIAGSPDAAELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQ 73 Query: 60 AVQKGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115 AV GA V+ + ++ +P+ D AL ++A +++ +TG Sbjct: 74 AVAAGAVAVLTDAAGAERPALRDAGVPILVHPDPRAALGEIAAWIYGEPSLELSVLGVTG 133 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFG 163 + GKTTT ++ L + T IG+ P A + V ++ G Sbjct: 134 TSGKTTTSYLVDAGLQAAGLTTGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVMLERG 193 Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + M S + R + T ++ HL ++E +AK+ +F+G Sbjct: 194 VTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDGRSTHE 253 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + ++ +A I G + EQ++ G Sbjct: 254 VVVVDSAWG-----QALLTPQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGARA 308 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G N ++ I+S ++ + L+ + G+ R + Q F + Sbjct: 309 AARIPLPGEFNVANAVLAAAILSTAGVSLEHIVAGLAQ---VQVPGRMERVHVGQEFTAV 365 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + L + EGR I VLG G + + + Sbjct: 366 VDYAHKPAAVA-----QGLDALRARTEGRIITVLG----CGGDRDTAKRPIMGEAAARRS 416 Query: 402 SHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++ A++ A+ + S GD+V Sbjct: 417 DVLIVTDDNPRSEDPAAIRAAMLAGARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIV 476 Query: 448 VV--KS 451 + K Sbjct: 477 FLAGKG 482 >gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter hamburgensis X14] gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter hamburgensis X14] Length = 485 Score = 96.5 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 65/450 (14%), Positives = 129/450 (28%), Gaps = 34/450 (7%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + V G+++DSR + P + FFA+ G DG FI A+ V + + Sbjct: 19 ELAVTGLAVDSREVKPGDLFFALAGTKTDGARFIDAAI----AAGAVAVVGDHAPAGACV 74 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------- 136 P + AL A R ATI A+TG+ GKT+ + Sbjct: 75 PSVATSNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGTI 134 Query: 137 -YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVI 189 + ++D + E L S G ++ VR A Sbjct: 135 GVVAPSRAVYGSVTTPDPISLHRELDQLVGEGVTHLALEASSHGLDQYRLDGVRVRAAGF 194 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ H+ + K +F L + + + D ++ + I Sbjct: 195 TNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGVAVISADHDCSGTVIEAASARNVRIMR 254 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 G+ + + + + + + + + L ++ Sbjct: 255 VGRRGDGTHSGIRLADAVIEGFAQRVTLEHAGRERIIRLPLVGEFQIENALVSAGLVIGT 314 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 A + + EG R + + + + A L + P+ Sbjct: 315 GGDADQVFAALEHLEGAKGRLELVGERNGAPVFVDYAHKPDA----LAKALQALRPYASR 370 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIH 423 + + V G G + L ++ N V ++ + + L + Sbjct: 371 KLVVVFGA----GGDRDAGKRPLMGEVAAANADVVIVTDDNPRSENPAAIRAAILAAATG 426 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L GD +++ K Sbjct: 427 AREIGDRAEAIRTAIVGLQPGDALLIAGKG 456 >gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis ATCC 6249] gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis ATCC 6249] Length = 481 Score = 96.5 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 72/496 (14%), Positives = 151/496 (30%), Gaps = 52/496 (10%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T ++L+ G + IS DSR + + FF +KG + Sbjct: 1 MIKIETVLNILKKNGLFREIINQGSYYYNYSDVDFDSISYDSRKVKERSLFF-VKGASFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +F+L A+ +G + D + IP V+D+ A++ +A+ + K I Sbjct: 60 -KEFLLSAISQGLDWYIAEQDY-----EVGIPAIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT L+ + G + + +F++ Sbjct: 114 LAFTGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQ 173 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + R + A + + ++ + + Sbjct: 174 AVHNGRTHLIMEVSSQAYLVK------RVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----- 285 LL S A+ I + + ++ QS +++ Sbjct: 228 HKRLLMENSRAVVINSDMDHFSVLKEQVEDQEHDFYGNQSSNQIENSKAFGFSATGKLAG 287 Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 + I N + + G+ G ID Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVV--KSS-N 453 +L+ +A+ + + S V + + D V++ K + Sbjct: 400 FLTADDPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADR 459 Query: 454 SCGFYRLINLLLEEFP 469 +++N + E +P Sbjct: 460 Y----QIVNGVKESYP 471 >gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica CNB-440] gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinispora tropica CNB-440] Length = 514 Score = 96.5 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 82/471 (17%), Positives = 150/471 (31%), Gaps = 49/471 (10%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 A+ + V G++ S+ + P + + A+ G G +F+ A + GA V+ Sbjct: 28 ADAVD--LRPGPTEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLT 85 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128 + D A+ + +P+ V D L LA T+I +TG+ GKT+T ++ Sbjct: 86 DPDGAAATAEVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVES 145 Query: 129 ALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV---- 182 L + T IG+ +G V ++ P D G + + Sbjct: 146 GLRAAGHTTGLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHAL 205 Query: 183 --------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234 R + T HL + + +AKA++F+G + LN+DD Sbjct: 206 AMGRVGGVRFTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDG--RCEVEVLNHDDPALLP 263 Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 L H T + G + + Q + G ++ G H Sbjct: 264 L----HRPATVTYSAAGDGAATWWADEAGGEGYAQRFTLHGPDGLTLPAGVALPGRHNVA 319 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L+ + ++ TA+ ++ GR + Sbjct: 320 NALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVPSPGPVRGVVDYA-------HKTD 372 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409 A ++ L+ + GR I +LG G L V + V ++ Sbjct: 373 AIVAALAALREFSTGRLICLLGA----GGDRDRGKRPLMGVAAAEGADVVLVTDDNPRTE 428 Query: 410 HVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVV-VV-KS 451 ++ + + V GDVV ++ K Sbjct: 429 DPADIRAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKG 479 >gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 476 Score = 96.5 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 149/476 (31%), Gaps = 62/476 (13%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 N L+T + GIS D+R + F +G YDG F+ A Sbjct: 7 NELFTL----------LHIPCEDTRILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEA 56 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 + KGA V+ + + + V+ + AL +L + +I +TG+ G Sbjct: 57 LDKGAV-VLCDEPLKQEHVYYTP---YVERIRQALLEL---YYGDLCARLHVIGVTGTNG 109 Query: 119 KTTTKEMLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166 KT+ +++ L+ I +N G V GI Sbjct: 110 KTSVASIISQLLAMEDCAVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITH 169 Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224 + +S + ++ V T I HL K ++ L+ GTI Sbjct: 170 VVMEVSSHAIDQNRISFLQFDDIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGTII 229 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 N D S+ + L + I ++ QL + M V Sbjct: 230 YNSDLSYMQELVNLAQHTCISIGMQAAHFPLSEVQLSAHDLSFHLQGYAFHARLLGMVNV 289 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N+ + +V + ++ P GR + FT+ + Sbjct: 290 ---------YNLAEAIVVVHRTGCSYERLVQDCEQLKPVSGRMEVMEVGG----FTIWID 336 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + A +L + +GR + +LG GE ++ +A + + Y+ V Sbjct: 337 YAHTASA----VKELLLFANSVKKGRILTILG---CGGERDRTKRPQMAAIAAAYSDIAV 389 Query: 405 WLS----GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 + S G V + + + E + D++++ K S Sbjct: 390 FTSDNPRGESVADILQDMKCESFSNAVVFENRYFAIKHTIKVAQNSDIIIIAGKGS 445 >gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola CNS-205] gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola CNS-205] Length = 515 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 80/482 (16%), Positives = 148/482 (30%), Gaps = 53/482 (10%) Query: 7 FHDLLQAIQGH-------SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 DL + + V G++ S+ + P + + A+ G G +F+ Sbjct: 15 LGDLADRLAAEPDAGTVNLRPGPSEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVPA 74 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 A + GA V+ + ++ +P+ V D L LA A +I +TG+ Sbjct: 75 AARAGAVAVLTDPAGASATAQAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIGVTGTA 134 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVD-VDFGIFELGMSHLGEI 175 GKT+T ++ L + IG+ +G + + R + D G Sbjct: 135 GKTSTAYLVESGLRAAGHVTGLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAARERGVT 194 Query: 176 RFLTHLV------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + + R + T HL + +AKA++F+G + Sbjct: 195 AVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDG--RCEVE 252 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 LN+DD L ++ ++ + + E L G Sbjct: 253 VLNHDDPALRPLYRQA-------TVTYSAAGDRSATWWADAVGGEGYAQRFTLHGPDGLA 305 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 + G+ N+ L +++L A A A + G R G + Sbjct: 306 LPAGVALPGRHNVANALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVRAPGPVRGVV 365 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + A ++ L+ + G GRR+ L G L + + Sbjct: 366 DYAH----KTDAIVAALAALREFGAGRRLICL---LGAGGDRDRGKRPLMGIAAAEGADV 418 Query: 404 VWLSGFH----------VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVV-VV- 449 V ++ + L A V GDVV ++ Sbjct: 419 VVVTDDNPRTEEPAEIRAEVLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLG 478 Query: 450 KS 451 K Sbjct: 479 KG 480 >gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] Length = 494 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 71/445 (15%), Positives = 134/445 (30%), Gaps = 40/445 (8%) Query: 34 SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93 SR+ + + F A KG D H F + + +G ++VVN + V D L Sbjct: 30 SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQEVKGE---VTQVIVPDTLR 86 Query: 94 ALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIAL--------------SSIKKTY 137 + LA + T +TG+ GKT+ M+ + I + Sbjct: 87 VASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQINEEK 146 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 + + + VD + +S G V +AV + + HL Sbjct: 147 TKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVAVFSNLTQDHL 206 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 +E AK+ +F L + + + + + I ++G A Sbjct: 207 DFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYLETVTPYEILTYGIDNEAQ 266 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 F + K+ + + + + V +G N++ + V D ++ + Sbjct: 267 FMAQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNLMAAMIAVWSKGIDFKDIVEVV 326 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 P EGR L+ + Y M I + + L Sbjct: 327 KSLEPVEGRL----EVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQK----LIFLVG 378 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHY--SET 429 M GE + ++ +V + + + + H +Y E Sbjct: 379 MA--GERDLTKTPEMG--AVACRADYVIFTPDNPADDDPKMLTAELAKGATHNNYIEFED 434 Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNS 454 GD VV+ +S Sbjct: 435 RAEGIKHAIEVANPGDTVVL-ASKG 458 >gi|325519756|gb|EGC99063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. TJI49] Length = 161 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 13/132 (9%) Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T++D++YNANP SM+AAI VL+ R+ V+GDM E+G+ +FH ++ Sbjct: 29 TVVDDTYNANPDSMRAAIDVLAGQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARER 84 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSC 455 + ++ G A + + + L + L G V+VK S Sbjct: 85 GVDALFALGDASRDACTAYGDTAR--HFGDVGALVEAL---LASGYDAAATVLVKGSRYM 139 Query: 456 GFYRLINLLLEE 467 R+++ L + Sbjct: 140 KMERVVDALTNQ 151 >gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA47901] Length = 481 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G + D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFRFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|297521714|ref|ZP_06940100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli OP50] Length = 76 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIG 79 GAG ++V+ + + Sbjct: 58 KAGGAGALLVSRPLDIDLP 76 >gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [gamma proteobacterium NOR5-3] gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [gamma proteobacterium NOR5-3] Length = 491 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 40/459 (8%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 VP + + +DSR + + F A++G DG +F+ A GA +V ++ Sbjct: 19 LAAEVPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDELPLR 78 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK 135 + +P+ + ++ L ++A I A+TG+ GKTT ++ + S+ Sbjct: 79 LSP--LPMVVIPNLRHRLCEIAGRFFREPSREMHIAAVTGTNGKTTVSQLFARLVRSVGY 136 Query: 136 TYACIGS--YNNHIGVPLTLAR----------MPVDVDFGIFELGM--SHLGEIRFLTHL 181 IG+ + GV ++ + + + M S + + Sbjct: 137 DCGVIGTLGASLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHALHQGRVNT 196 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 + A+ T + HL ++ AKA +F I D F A+ Sbjct: 197 LDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLFAFESLRTAILN--ADDPFSRHLAQRVP 254 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 G+ + + A+ +L K + + +G A N+L L Sbjct: 255 TGVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAVNLLAALT 314 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 ++A+ GR + R A + +A VL Sbjct: 315 AALQAGLPFKAVMEAVESLASVPGRMEPLRVAGGPLVVIDYAHTPDA-------LRQVLL 367 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKD 416 + +G IAV G G L ++ + A+ Sbjct: 368 TLREQCQGSLIAVFG----CGGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAIIA 423 Query: 417 ALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451 + S+ Y S D V++ K Sbjct: 424 DIQASMKGDYLVCADRAEAIRLAIESAGAKDCVLIAGKG 462 >gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7] Length = 514 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 69/485 (14%), Positives = 137/485 (28%), Gaps = 56/485 (11%) Query: 5 WTFHDLLQAIQ-------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57 +T + + +G + + ++ DSR++ P F KG + ++ Sbjct: 4 YTLKEYADLLSSVDMLAEAEMMGRD-ETVITYLTYDSRAVTPGTLFIC-KGAAFK-EQYL 60 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITG 115 +A++ GA V V +P V D+ A+ LA + + T+I G Sbjct: 61 ENAIRAGAVAYVSE---VQYETETKVPCLIVKDIRKAMPPLAEMYFNKAWQELTVIGFGG 117 Query: 116 SVGKTTTKEMLTIALSSIK--------------KTYACIGSYNNHIGVP-----LTLARM 156 + GK+T+ + + Y + +HI P R Sbjct: 118 TKGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESVELHEHMRH 177 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 VD E+ +S + ++ +AV I+ H+S + +++ Sbjct: 178 AVDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDYISSKMKMF 237 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + D LKA A KT K +ADF + + V+ Sbjct: 238 ALAKQAVVNLDADFVERALKAAEDAGSFKT--FSLKDPSADFYGYNIHKEDGEIIFSVKC 295 Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 G +N + + ++L ++ L R + Sbjct: 296 DKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRAR----SSGRMELYTSA 351 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 Y N S + + P ++ G + DL + Sbjct: 352 DKRVTAVVDYAHNKLSFEKLFGSTREEYP-----DHDIVAIFGCPGYKAYIRRKDLGLIA 406 Query: 397 SLYNISHVWLSGFH---------VLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446 Y+ V+L + ++ E V Sbjct: 407 GEYS-KKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIEDRGVAIHKAIMECKRPTV 465 Query: 447 VVVKS 451 +++ Sbjct: 466 LLITG 470 >gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] Length = 501 Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 78/464 (16%), Positives = 150/464 (32%), Gaps = 52/464 (11%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L + + ++ G + DSR + +AF A G DG ++ A+ + Sbjct: 8 LNNAAEAVAWLRSRVQGE--------LQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQ 59 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121 GA V+V D + + + + + A +A ++A+TG+ GKTT Sbjct: 60 GAAAVLVEADGLQAFDLSGDRIASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTT 119 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163 T L ALS + + +GV R D Sbjct: 120 TAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLA 179 Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + S +G + + +A+ T HL ++ AKA++F+ + Sbjct: 180 ACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPTAV 239 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 D L ++S A Q + E V G S+ + Sbjct: 240 VNIDDAHGARLWAR--LQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRM 297 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 +G + N+L L + L ++ A+ A + P GR ++ Sbjct: 298 NTRLVGQYNVSNLLGVLAALRCLGLTLEEAVAACAHLEPVPGRMQQIVKPGQPLVAVD-- 355 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P +++ A+ L + +G+ V G G + L + N Sbjct: 356 --YAHTPDALEKALRALQPAARQRQGKLWCVFG----CGGDRDNSKRPLMGQAAQANADG 409 Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 V+++ + + E + + I + + G+ + Sbjct: 410 VFVTSDNPRS--------------EVPESIIDQILAGMQAGETL 439 >gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] Length = 552 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 84/493 (17%), Positives = 146/493 (29%), Gaps = 56/493 (11%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 P T +L + + G V +GI+ DSR++ P + + A+ G G DF A Sbjct: 13 PATTLEELADQLGVDARGAETPAAVVLSGITHDSRAVRPGDVYAALPGARVHGADFSAQA 72 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118 GA ++ + + +PV V D G + ++A I ITG+ G Sbjct: 73 ASLGAAAILTDPAGAGPALATGLPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSG 132 Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166 KTTT ++ L + ++ A + M + + E Sbjct: 133 KTTTAYLIEGGLRAAQEARAKETGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQAL 192 Query: 167 -------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213 + +S + +AV ++P H+ S +E+ AKA++ Sbjct: 193 FAVMRERGVRALAMEVSSHALVLGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQL 252 Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 F + + D+ LL + SF + D R Sbjct: 253 FTKARSKLGVVNHDDEYGRRLLTE-----SEVPVISFSAEGHPDADWRAEDVIVGSLDST 307 Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333 G + + N+ TL V L A A G R Sbjct: 308 FTAVGPEGQRISARSPLAGPFNVANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERV 367 Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 + + + + A SVL + EGR VLG G+ + + Sbjct: 368 DAGQPYLAVVDYAH----KTDAVESVLRALRKVTEGRLYIVLG---CGGDRDTTKRGPMG 420 Query: 394 EVL------------SLYNISHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSS 440 + + + + + + + V G Sbjct: 421 AAAARLADLAVLTSDNPRSEDPLAILSTMLAGAAEVPIHERGDVIIDADRAGAIAEAVVR 480 Query: 441 LVDGDVVVV--KS 451 GD V+V K Sbjct: 481 AEAGDTVLVAGKG 493 >gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae 70585] gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae 70585] Length = 481 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 147/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISQDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQNHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N ++ + G+ G ID Sbjct: 288 DYDIQLIGNFNQENSVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. BL107] gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. BL107] Length = 502 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 74/477 (15%), Positives = 135/477 (28%), Gaps = 41/477 (8%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +LL+ + + ++ DSR P F + G DG F A+ GA Sbjct: 5 LDELLRDVGLTPTVGGSNPQIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALNAGAA 64 Query: 67 LVVVNTDMVASIGSLS-IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKT---- 120 V+ A V V D L L +LA + R + + + Sbjct: 65 AAVIGPAAAAVDPPGDSDQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGKTTT 124 Query: 121 --TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------LG 168 + + S + ++ H + + E + Sbjct: 125 TYLIEHLALACGRSTALFGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLAAME 184 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFL 225 +S + R AV T + HL +E+ AKA +F + Sbjct: 185 ISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPARAVV 244 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD + L + LG + S A+ ++ S + Sbjct: 245 NGDDPWGAKLAER---LGAQCWRSSLTDPTAELRMEDLCMTSHGVSGRLISPLGEGAFQS 301 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 +G N+L +G++ + ++A+S F GR R L T + Sbjct: 302 PLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGR--MERVLLEDAITTTLPTV 359 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 + + L+ P EG+ I V G G ++ V Sbjct: 360 LVDYAHTPDGLENALAAARPFAEGKLICVFG----CGGDRDRGKRPQMAAIAARLADRVV 415 Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + +P + + D+V+V K Sbjct: 416 VTSDNPRTEDPLRILEDVVKGIPDGVDRVVDPDRGAAIAQTIAEADAADLVLVAGKG 472 >gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pneumoniae 670-6B] gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pneumoniae 670-6B] Length = 481 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 146/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS T G + + +F++ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQ 173 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + R + A + + ++ + + Sbjct: 174 AVKNGRSHLVMEVSSQAYLV------HRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 499 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 75/469 (15%), Positives = 148/469 (31%), Gaps = 41/469 (8%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 ++ + V G++ DSR +AF A G D F+ A+ KGA + Sbjct: 6 TPAQAVEWLRSRGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQS 65 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131 + + +A A ++++TG+ GKT+T L AL Sbjct: 66 GAEAFELDPDRTGFYSGLKAGSGPIAAAFYGMPSRDLAVMSVTGTNGKTSTAWWLAQALG 125 Query: 132 SIKKTYACIGSYNNHIGV--PLTLARMPVDVDFGI----------------FELGMSHLG 173 + A +GV P L + + S +G Sbjct: 126 QVGGKEAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKACAMEASSIG 185 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233 H A+ T HL + ++K +F + DD E Sbjct: 186 IEELRMAGTVIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSWDGLKAAVVNVDDDKGAE 245 Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293 A A +++ G ++A R ++ +V +S+ + H IG + Sbjct: 246 --LAAELASTSLDVWTVGVQRDARLVARGVTHSAQGLAFDVVEGRESVRLQSHVIGSYNV 303 Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353 N+L + + + + +A+++ + P GR C + + Y P ++ Sbjct: 304 SNLLGVIAAMRTVGIPLQSAVQSCATLLPVPGR---MECVGGDSAPLVAVD-YAHTPDAL 359 Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413 A+ L ++ G+ V G G + L ++ H ++ + + Sbjct: 360 AQALRALQPVAQARGGKLWCVFG----CGGDRDASKRPLMGAVAAAQSEHAVVTSDNPRS 415 Query: 414 ------LKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451 + L + + + S DV+++ K Sbjct: 416 EKPEAIVAQILLGMVECPHVDVQVDRAVAIADAIRSADARDVILLAGKG 464 >gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC3059-06] gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC3059-06] Length = 481 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G + D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFRFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQAGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosynechococcus elongatus BP-1] gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermosynechococcus elongatus BP-1] Length = 497 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 81/485 (16%), Positives = 147/485 (30%), Gaps = 61/485 (12%) Query: 5 WTFHDL---LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +L G V + ++S P F + G +G +F A+ Sbjct: 1 MNLRELLTAAAITPG-FEHPALNQEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFWPSAL 59 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------------- 107 GA VV+ A V V D+ A +LA A Sbjct: 60 AAGAIAAVVS--PQAKPREGEACVIVVPDIERACGRLAAAFYNYPSQHLSLLGVTGTNGK 117 Query: 108 ----------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 + ++ T + T + A + Sbjct: 118 TTTTHLVEHLLNRVGYPTALLGTLYSRWPGHCEVASHTTPFAVTLQEQ------LAAAVD 171 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 FG+ E+ SH + + +A T + HL +E+ +AKA++F Sbjct: 172 AGCRFGVMEV-SSHALAQDRVWGC-QFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTAD 229 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 G LN DD F + L + L +++G SK+ADF+ S V Sbjct: 230 YLKGRAILNGDDPFGQRLAQQ---LPRDRYWTYGLSKDADFRAENLNYRSNGVTGAVHTP 286 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 S + +G N+L + + + + ++ + AL F GR ++ R Q Sbjct: 287 LGSGTLDSPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQD 346 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 ++D ++ + ++L P G+ I V G G ++ Sbjct: 347 ITVVVDYAHTPDSLE-----NLLRAARPFIPGKLICVFG----CGGDRDRSKRPQMGAIA 397 Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448 V ++ + + +P + L + GD V+ Sbjct: 398 ARLADQVVVTSDNPRTENPQRILDDILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVI 457 Query: 449 V--KS 451 + K Sbjct: 458 IAGKG 462 >gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri A1501] gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas stutzeri A1501] Length = 487 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 74/462 (16%), Positives = 162/462 (35%), Gaps = 43/462 (9%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 + +++DSR + + F A+ G +DG D + A+ +GA V ++ + Sbjct: 9 LPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQ 68 Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135 + + + V + G L+ +A ++ +TG+ GKT+ +++ AL + + Sbjct: 69 ALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGE 128 Query: 136 TY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + + IGV TLA++ + + + +S G + Sbjct: 129 PCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVA-MEVSSHGLDQGRVA 187 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + +AV T ++ HL +E +AKA + G+ +N DD F L + Sbjct: 188 ALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARL-FGVPGLSCRVINLDDGFGRALAGEER 246 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + +A + + + + + +G N+L + Sbjct: 247 ESRLISY--SLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVLAAV 304 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G + + +D + L GR R ++D ++ + VL Sbjct: 305 GALLGMDYPLDEILAVLPELEGPAGR--MQRLGGGDRPLVVVDYAHTPDALE-----KVL 357 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412 + + PH GR + + G G + L ++ V ++ + Sbjct: 358 TALRPHARGRLLCLFG----CGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERIL 413 Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ V + + + ++ DVVV+ K Sbjct: 414 EDVRSGFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKG 455 >gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (Meso-diaminopimelate-adding enzyme) [Roseburia intestinalis L1-82] gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (Meso-diaminopimelate-adding enzyme) [Roseburia intestinalis L1-82] Length = 401 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ S+ + I S + F IKG + DGHD+I+ AV+ G Sbjct: 1 MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60 Query: 65 AGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 A VVV+ + + + + V GV D AL +++ A Sbjct: 61 AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120 Query: 106 SKATI 110 + Sbjct: 121 PAKKL 125 >gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Florida] gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Puerto Rico] gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Florida] Length = 472 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 66/455 (14%), Positives = 133/455 (29%), Gaps = 58/455 (12%) Query: 28 NGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI+ DSRS+ P F + KG F+ AV+ GA +V S Sbjct: 15 SGITADSRSVKPGFIFVCLSEAAKG-------FVPDAVKAGAKFIVAGNAGGLPHVDHSQ 67 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + KLA S+ +A +TG+ GKT+ + T A +G+ Sbjct: 68 -IIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126 Query: 143 YNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPHI 186 +G + + + S G + + V+ Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIK 245 A T ++ HL +E+ + K ++F + + G LN D +E L+ + I Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELAAGRNI- 245 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 ++G R + + + +G N+L L IV+ Sbjct: 246 --ITYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAIVAA 303 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + R ++ ++ S+K Sbjct: 304 SGSGHRDVPIDRLASPRGRMELIGDRIIIDYA---HTSDALKHALTSLKW---------H 351 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419 + + V G G +++ V ++ + + K+ + Sbjct: 352 GFPQKTVLVFG----CGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIML 407 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451 + + + + + V++ K Sbjct: 408 HCENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442 >gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP6-BS73] gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP6-BS73] Length = 481 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G + D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFRFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ +A+ D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. Mississippi] Length = 472 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 60/454 (13%), Positives = 128/454 (28%), Gaps = 56/454 (12%) Query: 28 NGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI+ DSRS+ P F + KG F+ AV+ GA +V S Sbjct: 15 SGITADSRSVKPGFIFVCLSEAAKG-------FVPDAVKAGAKFIVAGNAGGLPHVDHSQ 67 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + KLA S+ +A +TG+ GKT+ + T A +G+ Sbjct: 68 -IIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126 Query: 143 YNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPHI 186 +G + + + S G + + V+ Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T ++ HL +E+ + K ++F + + ++ E + Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAV--LNADSEQYGELRELAAGRN 244 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 I ++G R + + + +G N+L L +V+ Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAVVAAS 304 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + R ++ ++ S+K Sbjct: 305 GSGHRDVPIDRLAPPRGRMELIGDRIIIDYA---HTSDALKHALTSLKW---------HG 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420 + + V G G +++ V ++ + + K+ + Sbjct: 353 FPQKTVLVFG----CGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLH 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451 + + + + + V++ K Sbjct: 409 CENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442 >gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii DSM 2075] gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii DSM 2075] Length = 511 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 78/490 (15%), Positives = 139/490 (28%), Gaps = 62/490 (12%) Query: 8 HDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 L + I +G P + G+ DSR P F A+ G DGH A Sbjct: 4 DQLTRLIGPESLLGHAPTAELTGVCCDSRQAGPGMVFVAVVGHSADGHA-----YVAAAA 58 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124 +V I V D AL+ LA R + ++ +TG+ GKTT Sbjct: 59 AAGATAAVVQRPVEADIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICH 118 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSH 171 + ++ T V A D + +S Sbjct: 119 LARAIMAQRWPTGMIGTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSS 178 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE-------IFEGLEKTGTIF 224 + R + + T ++ HL + + AK K Sbjct: 179 HALDQHRADHCRFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSV 238 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + DD +L ++ G+ ++G + AD R + + + G S+E Sbjct: 239 ICLDDDHGRVLADQARGTGLAL-LTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFH 297 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 +G + QN++ + L + L GR +R ++ +D Sbjct: 298 SRLVGRYNLQNIVGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRV-PGPDRSPAVFVDY 356 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 +++ + L+ + P GR I V G G L + Sbjct: 357 AHSPEAIAA-----ALAVLRPLCAGRLICVFGA----GGDRDKGKRPLMGRAAGQAADFC 407 Query: 405 WLSGFHVL--------ALKDALPRSIHVHYSETMDG-----LFL--------FIQSSLVD 443 L+ + + +A + + Sbjct: 408 VLTSDNPRTEDPMAIIDMVEAGLVESEARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGP 467 Query: 444 GDVVVV--KS 451 DVV++ K Sbjct: 468 ADVVLIAGKG 477 >gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis 315-B] gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis 315-B] Length = 510 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 144/352 (40%), Gaps = 14/352 (3%) Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162 S ++ ITGS GKT+ K + L +T S+N +G+ + + + + Sbjct: 156 KESGLKVLGITGSFGKTSVKFISDTILKEKYRTKNTPSSFNTPMGLSKVINNELDKNHEV 215 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 I ELG GEI + LV P I +IT + P H+ F IE I + K E+ E L + G Sbjct: 216 FIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNTKYELIEDLPEDGI 275 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 NYD+ + + L K+ Y + D + + + S + ++G Sbjct: 276 AIFNYDNDYVKPLADKT--KKKTYRYGIKDIEKLDVYAKDIRVNEKGSTFTLGIKGLG-- 331 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 + N+ L S + + + R + + +I Sbjct: 332 EISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHRLNIVPSPAGYVVI 391 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D+++N+NP +AA+SV+ + EG++I + M E+G + + + + ++ Sbjct: 392 DDAFNSNPVGFRAALSVIDEFK---EGKKIIITPGMVELGAIEEEENYKIGIEIAKV-CD 447 Query: 403 HVWLSGFHVLA-LKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 +V L G + A +K AL + + ++++ + GDVV+ Sbjct: 448 YVILVGQKISAPIKRALIDNNFNEDRIFTVKSLNDGTSKLVEIAKAGDVVLF 499 >gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] Length = 515 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 94/482 (19%), Positives = 156/482 (32%), Gaps = 49/482 (10%) Query: 3 PLWTFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 PL +LL A G + + V GI+ DSR + P + + A+ G G +F A Sbjct: 11 PLLGLVELLSAQADGP---GLAKVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAA 67 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 GA + + + +PV DDV L + A ++I +TG+ GK Sbjct: 68 AAGAVAIWTDPAGRHRAAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGK 127 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIF----------- 165 TTT +L L + A IG+ IG +P +L IF Sbjct: 128 TTTVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAA 187 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + +AV T ++ HL + + + +AKA++F + Sbjct: 188 AMEVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGVVN 247 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D EL A T +S +AD++ + ++ S + G V Sbjct: 248 VDDGYGREL---TRIAQVPLTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVS 304 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + + + A + G R FT + + Sbjct: 305 IQLPGPFNVANALAAIVALVEAGLPLQV--AAAGVGTLTGVPGRLEPIDEGQDFTALVDY 362 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 A +VL+ + GR I VLG G L + Sbjct: 363 ----SHKPGAVEAVLTSLREVTAGRLIVVLG----CGGDRDRGKRPLMGETAARLADVAV 414 Query: 406 LSGFHVL-----ALKDAL-------PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV-- 449 L+ + A+ A+ P++ H GDVVV+ Sbjct: 415 LTDDNPRSEDPLAILAAMVEGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAG 474 Query: 450 KS 451 K Sbjct: 475 KG 476 >gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. 2_1_36FAA] gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. 2_1_36FAA] Length = 481 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 79/489 (16%), Positives = 152/489 (31%), Gaps = 71/489 (14%) Query: 1 MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + IS DSR++ FF +KG ++ Sbjct: 1 MIKIETIIDILKKDHNFREIIKDGHYFFHDSGLTFDKISYDSRNVTNTTLFF-VKGENFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +F+ AV+ G + +D + IPV V+D+ A++ +A+ + K I Sbjct: 60 -KEFLEGAVESGLKFYISESDF-----EVGIPVLVVNDIKQAMSLIAMEFYGNPQDKLKI 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP------------- 157 +A TG+ GKTT+ LS + G + + Sbjct: 114 LAFTGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFKMMAQ 173 Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212 D I E+ S ++ + + +V I+P H+ E+ K Sbjct: 174 AVANDRTHLIMEV--SSQAYLKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRL 231 Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272 + E + +N F+++K + ++ + D Q ++ + + Sbjct: 232 LMENSR---AVVVNSGMDHFQIVKEQVSSIEHDFYGENSSNTIIDSQAFNFEVSGKLAGK 288 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 L + G+ Sbjct: 289 YDIQLIGRFNQE-------------NALAAGLACLRLGASLTDIQKGITLTRVPGRMEVL 335 Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392 G +D ++N + +L+ + H +G+ + VLG GE + D Sbjct: 336 TQKNGAKVFVDYAHNGDS-----LTKLLNVVQEHQKGQTVLVLGATGNKGESRRK---DF 387 Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444 +L+ + V L+ + + S V S +G Sbjct: 388 GILLNKHPEIQVILTADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEG 447 Query: 445 DVVVV--KS 451 D V++ K Sbjct: 448 DAVILAGKG 456 >gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] Length = 481 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 81/493 (16%), Positives = 149/493 (30%), Gaps = 64/493 (12%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + F +++ +G IS DSR + FF +KG ++ +F+ AV+ G Sbjct: 15 YNFREIID--KGQYFYHYRNLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEKAVESG 70 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122 V TD ++IPV V+DV A++ LA+ + K ++A TG+ GKTT+ Sbjct: 71 LQFYVSETDF-----EVTIPVILVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTS 125 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166 L K G + + I E Sbjct: 126 AYFAYHILQQSHKPALLSTMNTTLDGEHFFKSTLTTPESLDLFKMMATAVENGRTHLIME 185 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224 + S ++ + + + V I+P H+ E+ K + E Sbjct: 186 V--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVVNS 243 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 A + Q + Q++ + + Sbjct: 244 EMDHFEVLAEQVA-------------SMEHDFYGQHSDNQIHHSQAFSFETSGILTEKFD 290 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 IG +N L L A + K ++ + + F Sbjct: 291 IQLIGRFNQENALAASLACLRLGATISDIKKGIAATRVPGRMEVLTQQNGAKVFVDYAHN 350 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + ++LS + H +GR + VLG GE + D +++ + V Sbjct: 351 GVSLA--------NLLSVVQEHQKGRIVLVLGATGNKGESRRK---DFGLLINQHPELMV 399 Query: 405 WLSG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSS-LVDGDVVVVKSSNSCG 456 L+ +A+ + I + GD V++ Sbjct: 400 ILTADDPNYEDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++IN +P Sbjct: 459 CYQIINGKKANYP 471 >gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus SK60] gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus SK60] Length = 520 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 76/501 (15%), Positives = 151/501 (30%), Gaps = 60/501 (11%) Query: 1 MN---PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHD- 55 M P+ + L ++++ + V +DSR + + F +K + D D Sbjct: 1 MITLQPMMSALSLPESVR-QLLNPVMNQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDL 59 Query: 56 -----FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT- 109 ++ K A V+ D+ A +P+ + + L L + + T Sbjct: 60 EKVAGYLAQVSDK-AAFVLSEIDVSAIQSQFMLPIIYLPTIRDFLGSLIQTSLQQQHPTQ 118 Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACI------------GSYNNHIGVPLTLA 154 +IA+TG+ GKTT +++ +S A + S + + V Sbjct: 119 LPAVIAVTGTNGKTTVSQLVAQLISQSGIKTAVMGTAGNGVLPNLTPSTHTTLEVFNLQH 178 Query: 155 RMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAK 210 + G+ L S G + V ++A+ T ++ HL + +++ A A+ Sbjct: 179 AIDDFAKQGVQALAIEASSHGLHQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKAR 238 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ- 269 +N DD F EL+ ++A + + ADF + + Sbjct: 239 LFDKAHFPTLTHAIINLDDEFSELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGG 298 Query: 270 ------SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 S ++ G + +A + ++ + P Sbjct: 299 DLTIALSKAVTPQGELTVNSPLLGRFNVANLLASIAGAFALSQSAAMGLSVAQIQAAVPT 358 Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383 + I + + A VL+ + H G AV G G Sbjct: 359 LRGATGRMDRVPSTSSCFIVDYAHTPDA----LEQVLTSLKSHCTGELWAVFG----CGG 410 Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI------HVHYSETMDG 432 L L V L+ + A+ + + + Sbjct: 411 DRDKGKRPLMAQAGLRLADKVILTADNPRSEDPNAILNDMQAGMTCQQHYQAIIEPDRQK 470 Query: 433 LFLFIQSSLVDGDVVVV--KS 451 + D+VV+ K Sbjct: 471 AIEYAVQHAKPSDIVVIAGKG 491 >gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 575 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 92/478 (19%), Positives = 148/478 (30%), Gaps = 48/478 (10%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 + +L + G G V GI+ DSR++ P + + A+ G + G DF A GA Sbjct: 65 SLGELAARLGA---GPQDAGEVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGA 121 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123 ++ + + +PV DD G + LA R + I ITG+ GKTTT Sbjct: 122 AAILTDPAGAERAAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTA 181 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHL 181 ++ L ++ IG+ IG + P D M G + Sbjct: 182 YLVEGGLRGAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEV 241 Query: 182 VR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 +AV ++P H+ SG+E+ AKA++ T Sbjct: 242 SSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQL-----FTPERSKLGVV 296 Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 +F + + + +F + D + R + G E V Sbjct: 297 NFDDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAP 356 Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349 N+ TL + L A G R + + + + Sbjct: 357 LPGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDAGQPYLAVVDYAH-- 414 Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 A SVL + EGR VLG G + + L+ Sbjct: 415 --KTDAVESVLRSLRKVTEGRVHIVLG----CGGDRDTTKRGPMGAAAARLADTAVLTSD 468 Query: 410 HVLA------LKDALPRSIHVHYSETMDGL--------FLFIQSSLVDGDVVVV--KS 451 + + L L + V E D L + GD V+V K Sbjct: 469 NPRSEDPLGILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKG 526 >gi|313634141|gb|EFS00802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D [Listeria seeligeri FSL N1-067] Length = 147 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 4/146 (2%) Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 E R + +++++YN++P +++ + + G+ + VL DM E+G Sbjct: 1 VERSKSRLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMDSKGK-PKYLVLADMLELG 59 Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQS 439 ELS H + AEVL I ++L G + A I V + +T + L + Sbjct: 60 ELSVPLHQESAEVLEEGTIEKIFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLK 119 Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465 + + ++VK S G ++ L+ Sbjct: 120 EITGNEWILVKGSYGMGLKDVVENLI 145 >gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] Length = 479 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 77/413 (18%), Positives = 135/413 (32%), Gaps = 34/413 (8%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 P V G++ID R +AP F A G ++G DFI AV V Sbjct: 15 PNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPDAV----AAGAVAVVARPDAKVDG 70 Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136 + A +A R AT +A+TG+ GKT+T EM Sbjct: 71 AVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNAASIGT 130 Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFLTHLVRPHIAV 188 + S + + P + + + + S G ++ T + A Sbjct: 131 LGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYRTEGLPVKAAA 190 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T ++ HL +E +AK +F + + G + + D ++ + Sbjct: 191 FTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARARDVRVL 250 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 + G++ A +L + + + +V IG + A N L+ G+V Sbjct: 251 TVGQAGEA-LRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAAGLVIATGG 309 Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368 DV + L+ P GR G +D ++ + L + PH Sbjct: 310 DVALTLANLARLQPVRGR-LERAAIARSGAPIYVDYAHTPDAIEA-----ALDALRPHAT 363 Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416 GR I V G G ++ + ++ G ++D Sbjct: 364 GRLILVFGA----GGDRDQAKRPEMGRVAAAKADLLIITDDNPRGEDPAVIRD 412 >gi|167586016|ref|ZP_02378404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia ubonensis Bu] Length = 175 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 11/131 (8%) Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 T++D++YNANP SM+AAI VL+ R+ V+GDM E+G+ +FH ++ Sbjct: 43 TVVDDTYNANPDSMRAAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARER 98 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCG 456 I ++ G + + + + L + ++ V+VK S Sbjct: 99 GIDALFALGDASRDACASYGDTAR--HFGDVGALVDALLAAGYGARA--TVLVKGSRYMK 154 Query: 457 FYRLINLLLEE 467 R+++ L + Sbjct: 155 MERVVDALTNQ 165 >gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] Length = 485 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 75/453 (16%), Positives = 142/453 (31%), Gaps = 42/453 (9%) Query: 25 GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 V G+++DSR + P + FFA+ G DG FI AV V + +P Sbjct: 20 LEVTGVALDSRVVRPGDLFFALAGSKTDGARFIDAAV----AAGAVAIVGDHAPDGCKVP 75 Query: 85 VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------- 136 V + AL A ATI A+TG+ GKT+ + Sbjct: 76 FIAVANPRRALALAAARFFPAQPATIAAVTGTSGKTSVAAFTRQIWERLGHASASIGTIG 135 Query: 137 -YACIGSYNNHIGVPLT---LARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAVIT 190 + + + P +M G+ L S G ++ VR T Sbjct: 136 LVSPKRTVYGSLTTPDPIALHRQMDEIAREGVTHLAFEASSHGLDQYRLDGVRVSAGGFT 195 Query: 191 TIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 ++ H+ + A+ E + G ++ D + A G++ + Sbjct: 196 NLSRDHMDYHPTVAHYLAAKLRLFRELVPPGGAAVISADHDCSAEAIDAAKARGLRVMAV 255 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 A +R + + ++ ++ + V Q + + Sbjct: 256 GRNGDGAGEGIRLTEVGVDGFSQKLTVEHRGKRYVVLLPLAGEFQVENALVSAGLAIGTG 315 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 D A S+ H + +G+ R G +D ++ + + L + P+ + Sbjct: 316 SDAANVFASLEHLEGAKGRLERVGERNGAPIFVDYAHKPDALA-----KALQALRPYAKR 370 Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429 R + V G G + + ++ N V ++ + + P +I T Sbjct: 371 RLVVVFGA----GGDRDAGKRPIMGEIAAENADGVIITDDNPRS---EQPEAIRAAILAT 423 Query: 430 MDGLFLF---------IQSSLVDGDVVVV--KS 451 G L GD +++ K Sbjct: 424 AKGAREIGDRAAAIRAAIEELEQGDALLIAGKG 456 >gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205] gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205] Length = 499 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 78/462 (16%), Positives = 147/462 (31%), Gaps = 57/462 (12%) Query: 26 FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 NG +DSR +A + F A+ + +F A+ GA V+ + + Sbjct: 21 PFNGFCLDSRKVASGQIFIALNSYSQPEKT--IEFAQKALDSGALAVISESALGLKNE-- 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137 + V + + S+ +A+TG+ GKTT ++ L S + Sbjct: 77 ----WVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLV-AELISSQGLG 131 Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGMSHLGEIRFLTHLV 182 + + +P +D L S G + + Sbjct: 132 CAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLEQGRLNGC 191 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 IAV + ++ HL ++ A AKA +F+ + D +LKA + Sbjct: 192 DIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLKAVVINLDDQYASIMLKAAKNNP 251 Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 I ++ ++ + D+ + + + + S V +G +N+L +L Sbjct: 252 SQPKILTYSLTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFNVENLLASLI 311 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 D+ +K + GR + + L Y P ++ I VL+ Sbjct: 312 AAEYAGFDLADLVKFVPELKGAPGRMQVIQ-----DHERLFVVDYAHTPDAL---IQVLT 363 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALP 419 + H G+ AV G G L +L + V L+ + + Sbjct: 364 TLKRHVTGQLWAVFG----CGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQIFA 419 Query: 420 RSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451 H + F+ GD+VV+ K Sbjct: 420 DMKHGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKG 461 >gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] Length = 496 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 80/459 (17%), Positives = 145/459 (31%), Gaps = 46/459 (10%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHY--DGHDFILHAVQKGAGLVVVNTDMVASIGSL 81 ++G+ +DSR + P +AF A+ + G FI A +GA ++ + Sbjct: 19 DVVISGLVMDSREVQPGDAFVAL--ARFGAHGLCFIEDACARGAVAILFEPPAPQGVSVP 76 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI------ 133 V + L +A T++ +TG+ GKT+T ++L A + Sbjct: 77 DGA-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSAT 135 Query: 134 ----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 ++ + + + L ++ D + + +S + V Sbjct: 136 CGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVH 194 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + V T + HL +E +AKA +F + D LL Sbjct: 195 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQAAVINVDDLFGLRLLHG-LAKGV 253 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + S +AD + + ++ + V +G N+L G++ Sbjct: 254 RRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLAVAGVL 313 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L + LS P GR R Q ++D ++ + VLS + Sbjct: 314 YALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQP-MVVVDYAHTPDALG-----QVLSSL 367 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414 S H GR I V G G V++ N V ++ + + Sbjct: 368 SSHVCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADI 423 Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 R V GDVV++ K Sbjct: 424 LAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKG 462 >gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC 43243] gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC 43243] Length = 526 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 142/389 (36%), Gaps = 28/389 (7%) Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127 +V N +++ +D L + +I +TGS GKT+ K L Sbjct: 151 IVCNIINHPVEAAINRYYI--NDARRKLESV-------EGIKVIGVTGSYGKTSVKFYLQ 201 Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 L S+N +GV T+ + + I E+G H+G+I+ + +V P Sbjct: 202 TLLQEKYNVLVTPESFNTPMGVVRTIRGSLRSTHEIFICEMGARHVGDIKEICDIVHPDY 261 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 +IT+I P HL F +E I + K E+ + L G +FLN D+ + + Sbjct: 262 GIITSIGPQHLETFFNMENIKNTKFELADALPDDGILFLNGDNEYIQDKAKDYKNKVFYF 321 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 G A + G + IG H N+ + + L Sbjct: 322 AQGSGNGYCA---SDIAVSQLGTEFTMTAPDGTTENFQMRLIGAHNVINVAGAIAAANTL 378 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + + P R + G T+ID++YN+NP KAA+ L+ Sbjct: 379 GIPLSDLKIPVRRIQPVPHRMQMREH----GQVTIIDDAYNSNPVGSKAAVETLAMF--- 431 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSI--- 422 +G RI + M E+G+ + ++ + ++ L G H +K+ + Sbjct: 432 -DGIRILITPGMVELGDKEKEYNYKFGTYAADC-CDYILLVGKKHTEPIKEGVLSKGFTP 489 Query: 423 -HVHYSETMDGLFLFIQSSLVDGD-VVVV 449 + ++ + + G +++ Sbjct: 490 QKCQSFDKLEEALSYAYAIKGQGHRYILL 518 >gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter radioresistens SK82] gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter radioresistens SK82] Length = 499 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 76/482 (15%), Positives = 155/482 (32%), Gaps = 60/482 (12%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAV 61 TF ++ G++ +G +DSR + + F A+ + F +A+ Sbjct: 4 TFSEI---YPGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKT--RIFAENAL 58 Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSV 117 +GA ++ +D+ + + V + R + A I+A+TG+ Sbjct: 59 SQGALGIISESDLGVTTA------WVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTN 112 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------- 163 GKTT ++ L S +K + + +P +A +D Sbjct: 113 GKTTISRLI-AELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGA 171 Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 L S G + + IA+ + ++ HL + A AKA +F+ Sbjct: 172 NFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFKFATLRSA 231 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSM 281 + DD +L+ I ++ D+++ + + ++ Sbjct: 232 VINLDDDYAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLKGAKFKLIAPTGEY 291 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V +G +N++ +L V + + + GR + R A Sbjct: 292 VVQSPLLGQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDAER----LF 347 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + A VL + H + + A+ G G L +L + Sbjct: 348 VVDYAHTPDA----LTQVLVTLKRHVQHQLWAIFG----CGGDRDRGKRPLMTQAALNDA 399 Query: 402 SHVWLSGFHVL---------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449 V L+ + +K + + HV + GD+VV+ Sbjct: 400 DPVILTSDNPRTESPEQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAG 459 Query: 450 KS 451 K Sbjct: 460 KG 461 >gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium ulcerans Agy99] gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium ulcerans Agy99] Length = 559 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 78/488 (15%), Positives = 155/488 (31%), Gaps = 58/488 (11%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 +L + P + G+++ ++++ P + F A+ G G A Sbjct: 56 LAELAVQVGAVLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHTADA 115 Query: 61 VQKGAGLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113 +++GA V+ + V +I +L +PV G L + A T++ I Sbjct: 116 IERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGI 175 Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMP 157 TG+ GKTTT ++ L + + IG+ I + A + Sbjct: 176 TGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMVE 235 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 VD + E+ SH + + + R + T ++ HL + + AKA +F+ Sbjct: 236 RGVDTVVMEV-SSHALTLGRVDGI-RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPA 293 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277 + A T+ + G+ + Q + + Sbjct: 294 SALRGHSVVVCIDDEAGRAMADRAGVAITVSATGQPAHWRATDVAPVGAGGQEFTALDPA 353 Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337 G V G++ N L+ L I+ + + A L Sbjct: 354 GVGHRVRIGSPGHYNVSNCLLALAILDAVGVSPEQAAPGLRETRVPGRL----EQVDRGQ 409 Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 F + + Y P +++ +S L + + R V G G+ + + + Sbjct: 410 DFLALVD-YAHKPGALREVLSTL----RNPQRRLAVVFGA---GGDRDPGKRGPMGRIAA 461 Query: 398 LYNISHVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGD 445 V ++ G A++ + + V + GD Sbjct: 462 EL-ADLVVVTDDNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGD 520 Query: 446 VVVV--KS 451 VV++ K Sbjct: 521 VVLIAGKG 528 >gi|2073484|emb|CAA72472.1| UDP-MurNAc-pentapeptide synthetase [Rickettsia prowazekii] Length = 96 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 9/105 (8%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M W L A+ N + +S+ + + F A++G DGHD+I A Sbjct: 1 MI--WNSKTLSIALGIEI---SNSVNCNEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDA 54 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105 + KGA V+V+ + + + V++ AL K+A+ R Sbjct: 55 IDKGATAVIVSKQVEINDKD---KIILVNNSFEALQKMALYKREN 96 >gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545] Length = 614 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 87/463 (18%), Positives = 152/463 (32%), Gaps = 43/463 (9%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 +G V+GI+ DSR + P + F + G +DGHDF L AV GA VV ++ Sbjct: 107 LGEDEDVEVSGIADDSRVVLPGDVFVCVPGATFDGHDFALDAVAAGAVAVVCEGEIEGLT 166 Query: 79 GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136 IP V AL K+A A T + +TG+ GKTTT ++ L++ + Sbjct: 167 DE--IPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGVTGTNGKTTTTHLIQAILAANDVS 224 Query: 137 YACIGSYNNHIG-----VPLTLARM---------PVDVDFGIFELGMSHLGEIRFLTHLV 182 +G+ IG VP T +D G + +S Sbjct: 225 CGVVGTVGYEIGDGKYEVPNTTPDALQTQQILAGMIDAGAGACAMEVSSHALELGRVDEC 284 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSH 240 +AV T ++ HL +E+ AKA++F L + Sbjct: 285 DFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNAAYFIEAAG 344 Query: 241 ALGIKTIYSF----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 I ++ K AD + K ++ + +Q E V +G N+ Sbjct: 345 GGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLTIQTPVGEFEAVCGVVGKINVTNI 404 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + L +D + P GR + + +A Sbjct: 405 AAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELIDEGQPFSVIVDYAHTPDA-------L 457 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412 ++ + I V G G+ S ++ E+ Y+ V+++ + Sbjct: 458 KRAITSLRAANVRNVITVFG---CGGDRDASKRKEMGEIADTYS-DIVFVTNDNPRTEDP 513 Query: 413 -ALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + D L + + + D V++ Sbjct: 514 YKILDDTMQLQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICG 556 >gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola] Length = 292 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 18 SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77 I PQ + +S+DSR + ++ F AIKG DG+DFI AV+K ++ T Sbjct: 13 WIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKK 72 Query: 78 IGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL- 130 G + +IP+ + ++ LA II +TG+ GKTT +++ Sbjct: 73 HGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSE 132 Query: 131 -----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRF 177 + T T + + + I + +S G ++ Sbjct: 133 LLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSHGLVQN 192 Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237 + +I + T + HL +++ SAK F + I D + L+ Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQHKIKKIILNANDKYAKKWLRK 252 Query: 238 KSHALGIKTIYSFGKSKNADFQLRK 262 S I K K + Sbjct: 253 LSDKYTIAVTIQNEKQKKYSTKWIN 277 >gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. St. Maries] gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. St. Maries] Length = 472 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 61/454 (13%), Positives = 128/454 (28%), Gaps = 56/454 (12%) Query: 28 NGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 +GI+ DSRS+ P F + KG F+ AV+ GA +V S Sbjct: 15 SGITADSRSVKPGFIFVCLSEAAKG-------FVPDAVKAGAKFIVAGNAGGLPHVDHSQ 67 Query: 84 PVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + KLA S+ +A +TG+ GKT+ + T A +G+ Sbjct: 68 -IIICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126 Query: 143 YNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPHI 186 +G + + + S G + + V+ Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASA 186 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 A T ++ HL +E+ + K ++F + + ++ E + Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAV--LNADSEQYGELRELAAGRN 244 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 I ++G R + + + +G N+L L IV+ Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKVCGEVIYDGAFPVLGKFQISNLLCALAIVAAS 304 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 + R ++ ++ S+K Sbjct: 305 GSGHRDVPIDRLASPRGRMELIGDRIIIDYA---HTSDALKHALTSLKW---------HG 352 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420 + + V G G +++ V ++ + + K+ + Sbjct: 353 FPQKTVLVFG----CGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLH 408 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451 + + + + + V++ K Sbjct: 409 CENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442 >gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP9-BS68] gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1873-00] gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae SP195] gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP9-BS68] gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1873-00] gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae SP195] gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA17570] gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA47368] Length = 481 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 144/493 (29%), Gaps = 46/493 (9%) Query: 1 MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52 M + T D+L+ GH + + IS DSR + FFA KG + Sbjct: 1 MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59 Query: 53 GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110 +++L A+ +G V D + IPV V+D+ A++ +A+ + K + Sbjct: 60 -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113 Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 +A TG+ GKTT LS + G + + +F++ M+ Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 + ++ + ++ + + Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227 Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 LL S A +S K + D + + + S G Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287 Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 N + + G+ G ID Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N + +++ + H G+ VLG GE + D +L+ + V Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399 Query: 405 WLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456 +L+ + D + + V + D V++ Sbjct: 400 FLTADDPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458 Query: 457 FYRLINLLLEEFP 469 Y++I E +P Sbjct: 459 CYQIIQGKKESYP 471 >gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] Length = 506 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 85/475 (17%), Positives = 145/475 (30%), Gaps = 44/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 +L + S V GI+ DSR++ P + + A+ G G DF+ A GA Sbjct: 17 LAELADQLG--SSAPESAAEVTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAA 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 V+ + + +PV VDD + +LA I ITG+ GKTTT Sbjct: 75 AVLTDPTGAERAAASGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171 ++ L +++ T + R + + +S Sbjct: 135 LVEGGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSS 194 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 + I V T ++P H+ SG+E+ AKA++F + D+ Sbjct: 195 HALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRGKLGVVNVDDEYG 254 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291 L+ + ++ + D R Q + G E + Sbjct: 255 RRLVNEA-----TVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISAKSPLP 309 Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351 N+ TL + L A G R + + + + Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH---- 365 Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408 A SVL + EG+ VLG G+ + + + + V S Sbjct: 366 KTDAVESVLRALRKVTEGKLHIVLG---CGGDRDTTKREPMGAAAARLADTAVLTSDNPR 422 Query: 409 -FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 LA+ + + V E + GD V+V K Sbjct: 423 SEDPLAILATMLQGAASVPAYERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 477 >gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus mutans UA159] gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase; UDP-MurNac-tripeptide synthetase [Streptococcus mutans UA159] Length = 483 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 63/476 (13%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 F +++ P+ + IS DSR I FF +KG + +F+ A++ G Sbjct: 16 NFREIIDGKHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIESGL 73 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123 V D + IP+ V+++ A+ +A + K +A TG+ GKTT Sbjct: 74 TFYVAEKDY-----QVGIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAA 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167 L + G +++ + I E+ Sbjct: 129 YFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAVANGMTHLIMEV 188 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225 S + + + + V I+P H+ E+ K + + + + Sbjct: 189 --SSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLKHSR---YVIV 243 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N + F L+K + + ++ + + + + + S Sbjct: 244 NSQMNHFALIKEQVADQPHDFYGKYSDNQIINSKAFSFDLTGKLAGHYDIQLTGSFNQE- 302 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + + G+ G +D + Sbjct: 303 ------------NAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVLIQKNGAKVFVDYA 350 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +N + +LS + H +G I +LG GE ++ D V++ + V Sbjct: 351 HNGDSLE-----KLLSVVEEHQKGTLILILGAPGNKGESRRA---DFGYVINAHPELQVI 402 Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451 L+ + + I V+ S + D V++ K Sbjct: 403 LTADDPNNEDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKG 458 >gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium ammoniagenes DSM 20306] Length = 562 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 88/525 (16%), Positives = 158/525 (30%), Gaps = 88/525 (16%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + +G IG V+ I++DSR + + F A+ G G +F A Sbjct: 4 TLKKLAEIARGEIIGDGT-VTVDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQTS---A 59 Query: 66 GLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117 V+ + V + S P+ VDD+ L ++ T++ +TG+ Sbjct: 60 KAVLTDAAGVDILNGSDTAESFDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTS 119 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------- 166 GKTTT +L L + + IG+ I ++ + E Sbjct: 120 GKTTTTYLLESGLLAAGYSTGLIGTTGTRINRTPVDTQLTTPEAPTLQELFARMVDEGVT 179 Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S V + T ++ HL +EE SAKA++F G Sbjct: 180 HVVMEVSSHALDLGRVQGVDFAVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGNNAARHA 239 Query: 224 FLNYDDSFFELLKAKSHA---------------------------------------LGI 244 + +D + E L + A G Sbjct: 240 VVCINDDWGERLADQVDAEDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTRELLVPGT 299 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 + + Q+ +S + +S + G N + +G+ S Sbjct: 300 VVAWQQSVETTGEQQVALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMAS 359 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 D+DT I AL+ + F + + Y PA+++A + L Sbjct: 360 AAGIDLDTFITALTKVAVPGR----MQRIDEGQDFVAVVD-YAHKPAAIEAVLETLRSQL 414 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------------- 410 LG + G S L + V ++ + Sbjct: 415 ESAGNTAQGRLGVVVGAGGDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIREAVM 474 Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + R + + + + + DGD V+V K Sbjct: 475 AGAREAAEESNRPVEIVEIASRADAIDAVVNWAHDGDAVIVVGKG 519 >gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase [Aromatoleum aromaticum EbN1] gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase [Aromatoleum aromaticum EbN1] Length = 502 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 86/479 (17%), Positives = 159/479 (33%), Gaps = 51/479 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 ++L+ + G +GI+ DSR + P E F A G DG ++ A+++GA Sbjct: 6 AREILERL--RLSG----VVAHGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAA 59 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124 V+ + + +LS+P V + LA SK + +TG+ GKTT + Sbjct: 60 AVLWDDSDGMRLEALSVPALPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQ 119 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------IFE------LG 168 L AL+ + IG+ G P L + E + Sbjct: 120 WLAAALAGLGLRCGVIGTLG--CGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAME 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S +G + + V +AV T + HL S +E A AKA +F+ + D Sbjct: 178 VSSIGLDQERVNGVEFDVAVFTNLTRDHLDYHSSMESYAVAKARLFDLPGIGAAVINFDD 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-------KWKQCSEQSWMEVQLQGKSM 281 D + A G+ I + AD + + G Sbjct: 238 DFGLAQ-ARRLAASGMPVIGYTRFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHH 296 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 V + N++ +G + + +D ++++S P GR + Sbjct: 297 TVQVRMVAPFNVSNLMAVIGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVGGVGEPLVVID 356 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 Y +P ++ + + + GR + V G G + + ++ Sbjct: 357 ----YAHSPDALAQVLEAVRSTAQGRGGRLVCVFG----CGGDRDAGKRPMMGDVARALA 408 Query: 402 SHVWLSGFHVL-----ALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + DA+ + DV+V+ K Sbjct: 409 DRVIVTSDNPRSEDPLKIIDAIVRGAGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKG 467 >gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB5] gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB5] Length = 490 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 73/453 (16%), Positives = 141/453 (31%), Gaps = 34/453 (7%) Query: 21 IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 V G+++DSR++ P + FFA+ G DG FI A+ GA V + A G Sbjct: 21 GAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFIAAAIAAGAVAVAGDH---APDGE 77 Query: 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 L++P + + AL A R TI A+TG+ GKT+ + A I Sbjct: 78 LAVPFVPLGNPRRALALAAARFYSRQPRTIAAVTGTSGKTSVAAFTRHIWQRLGHAAASI 137 Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHI 186 G+ + + L S G +F VR Sbjct: 138 GTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAGEGVTHLALEASSHGLDQFRLDGVRVAA 197 Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246 T ++ H+ + +AK +F L G + D + Sbjct: 198 GGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVIDGGAAVISADHDCSAQVIDAARARGLR 257 Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 + + G++ +A +R + + ++ ++ H + L ++ Sbjct: 258 LITVGRNGDAGEGIRLIEASIDGFAQKLTIEHAGRRTAVHL-PLVGEFQIENALVAAGLV 316 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 A + EG R + + + + A L + P+ Sbjct: 317 IGAGGDPAAAFAALDHLEGAPGRLDFVGERRGAPVFVDYAHKPDA----LAKALQALRPY 372 Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420 + + + V G G + L ++ N + ++ + + L Sbjct: 373 AKRKLVVVFGA----GGDRDAGKRPLMGAIAAGNADSIIVTDDNPRSEDPAAIRAAILAA 428 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + ++L GD +++ K Sbjct: 429 APGAREIGDRAEAIRTAIAALAPGDALLIAGKG 461 >gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC 17931] gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC 17931] Length = 572 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 72/503 (14%), Positives = 141/503 (28%), Gaps = 59/503 (11%) Query: 6 TFHDL---LQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T +L L+A+ H + V GIS+DSR++ P + + A+ G G F A Sbjct: 33 TVTELVEHLEALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKA 92 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLG-ALNKLAVAARLRSKAT---IIA 112 ++ A ++ +T V I ++ + V D L + LA A Sbjct: 93 LEAQAHAILTDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYA 152 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVP-----------LTLARMPVD 159 +TG+ GKTTT ML + K GV + + + Sbjct: 153 VTGTNGKTTTTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIM 212 Query: 160 VDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + G+ M S V ++ T + HL ++ +KA++F Sbjct: 213 GECGVSHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTPE 272 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----------LRKWKQCS 267 + D+ ++L+ LG Sbjct: 273 RTERAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVER 332 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + L + + + N+ ++ + + +G Sbjct: 333 DGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTA 392 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +L + + L + G GR I V G E Sbjct: 393 LTPIVPGRMQLISLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGE----RDH 448 Query: 388 FHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-----------PRSIHVHYSETMD 431 L ++ + V ++ G +++A+ R+ + + Sbjct: 449 LKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPRE 508 Query: 432 GLFLFIQSSLVDGDVVVVKSSNS 454 D +++ Sbjct: 509 VAIARAIELADARDAILIAG-RG 530 >gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium NOR51-B] gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium NOR51-B] Length = 484 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 150/478 (31%), Gaps = 52/478 (10%) Query: 1 MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 M + + +L+ + ++ I++DSR++AP F A+ G DG FI Sbjct: 1 MTLAVKSLAELID-VPAEL----GSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFIDD 55 Query: 60 AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSV 117 A++ GA V+ D +A V V + +A A ++A+TG+ Sbjct: 56 ALRAGAAAVLAEADGLAQQHP---KVIAVPALRSRCGDIARRGFGDVSARMALVAVTGTN 112 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDF 162 GKT+ ++ L + IG+ + + TLA + Sbjct: 113 GKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVNTTPDVFTLHRTLAAWHAEDID 172 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + SH L L + T ++ HL +AK + + Sbjct: 173 HVVLEASSHALSQERLAGLT-LRTGIFTNLSRDHLDYHEDERAYLAAKLRL-----FSDY 226 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 + + + ++ + S +++ + + + Sbjct: 227 PLQYAIYNADDPMASEVRTVASCPTLGISMSSAEADVFAQFEVLQSGLNITLHAPYGTAS 286 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 G A N++ + + L D + + L GR R A Q ++ Sbjct: 287 AETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGR--MQRVASPQELAVVV 344 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ ++ + + P G V G G ++ Sbjct: 345 DYAHTPEALAV-----AIEALRPGCTGELWLVFG----CGGDRDRGKRAQMGRIAATLAD 395 Query: 403 HVWLSGFHVLA-----LKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V ++ + + + D + + I E G + + GDVV++ K Sbjct: 396 RVVVTSDNPRSEAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKG 453 >gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5] gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5] Length = 507 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 88/471 (18%), Positives = 153/471 (32%), Gaps = 49/471 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL + V G++ S+ + P + + A+ G G +F A + GA Sbjct: 15 LGDLADRVAATPPEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + VA +PV V D AL ++A T+I +TG+ GKT+T Sbjct: 75 ALLTDPAGVALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 ++ L + IG+ +G + VD + E+ Sbjct: 135 LVESGLRAAGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEV- 193 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + VR + T HL + + +AKA++F+G + LN+D Sbjct: 194 SSHALAMGRV-GGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHD 250 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D L H G T + G + + Q + G ++ Sbjct: 251 DPALRPL----HKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALP 306 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L+ + ++ + D +TA + ++ GR + NA Sbjct: 307 GRHNVANALLAVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRGVVDYAHKANA 366 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL + EGR I VLG G + ++ V ++ Sbjct: 367 -------IEAVLIALRDLTEGRLICVLGA----GGDRDRGKRPVMGGVAARGADVVLVTD 415 Query: 409 -----FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 A++ + V GDVV Sbjct: 416 DNPRTEDPAAIRAEVLAGAYAAATPARVIEVPGRRAAIEEAVRMAEPGDVV 466 >gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis raciborskii CS-505] gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis raciborskii CS-505] Length = 495 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 80/475 (16%), Positives = 149/475 (31%), Gaps = 40/475 (8%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 +LL I G V GI +S + + F I G DG +F A+ G Sbjct: 1 MNLRELLAVIDGVEYQGK-DVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAG 59 Query: 65 AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 A +++ + V + ++ A K I+ +TG+ GKTT Sbjct: 60 AVAAIISPQAASKTPPTSDALVITATSLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTT 119 Query: 122 TKEMLTIALSSIK---------KTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE--L 167 T ++ L+ T S + P + VD G + Sbjct: 120 TTHLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQAVDAGCQLGIM 179 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ ++V T + HL +E+ AKA +F G +N Sbjct: 180 EVSSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQGRAVINI 239 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 DD + + L + + +ADF + + + Sbjct: 240 DDHYGQRL--TIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFSSPL 297 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 +G + +N+L + V L D++T + + F GR +R + +Q ++D ++ Sbjct: 298 VGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDISVIVDYAHT 357 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + ++L P GR I V G G ++ V ++ Sbjct: 358 PDSLE-----NLLKAARPFIPGRMICVFG----CGGDRDKTKRPKMGRIAADLADVVVVT 408 Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + +P + GD V++ K Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKG 463 >gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptothrix cholodnii SP-6] gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii SP-6] Length = 513 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 80/461 (17%), Positives = 143/461 (31%), Gaps = 46/461 (9%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 DSRS+ EAF A G DG ++ A+ GA ++ D A+ G + + + Sbjct: 28 TDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAAAFGFDDERIAALPGL 87 Query: 92 LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY------------ 137 A +LA +IA +G+ GKT+T ALS + Sbjct: 88 KAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGVIGTLGVGEPP 147 Query: 138 --ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188 + + G+ R D F + S +G + +A+ Sbjct: 148 SRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHRLDAAPIRVAL 207 Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 T P HL + +N DD+ +L + A G ++ Sbjct: 208 YTNFTPDHLDYHGDMVAY-WLAKRALFDWPGLQAAAINVDDAQGAVLADELAARGDLDLW 266 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308 ++ ++A + + + V H IG + A N+L +G + L Sbjct: 267 TYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNASNVLAVIGGLRALGL 326 Query: 309 DVDTAIKALSVFHPKEGRGKRYRC-------ALNQGFFTLIDESYNANPASMKAAISVLS 361 + A + F GR R R + Y P ++ A+S L Sbjct: 327 PLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYAHTPDALDKALSALR 386 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412 ++ GR + V G G + ++ V ++ + Sbjct: 387 PVAHAQGGRLVCVFG----CGGNRDATKRPQMGAIAAQLADAVCVTSDNPRLEEPQAIVD 442 Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + + HV + + DVV++ K Sbjct: 443 QILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGKG 483 >gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques L2-14] Length = 488 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 84/479 (17%), Positives = 139/479 (29%), Gaps = 53/479 (11%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 LL+ + + V + DSR + F I G DGH + KG Sbjct: 1 MKLDKLLERLDYTVVQGSDSTEVTTLINDSRKVEEGSVFVCISGAVSDGHKYAADVAAKG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122 A VVV D+ ++ V V+D AL ++ A K +I ITG+ GKTTT Sbjct: 61 AAAVVVEKDVEV---PENVTVIKVEDTRYALALMSAAYFGYPADKMKVIGITGTKGKTTT 117 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166 M+ L IG+ IG + D + E Sbjct: 118 TYMIKSILEETGHKVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEMVEAGCDCVVME 177 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + S G + T + I + T + H+ + Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGRDHIGP-----NEHKDFDDYKRCKGLLFKQCKL 230 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283 + + I +FG S AD + + S + +V Sbjct: 231 GIANVDDKYFKDVFKGSTCKIETFGFSPEADLRAENVELVSRPGYLGVAYHVAGVMDFDV 290 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G N L + + V+ AL R FTL+ Sbjct: 291 EIDVPGKFSVYNSLTAISVCRHFQVPVEMIKDALKKAK----VKGRIEMIKVSDDFTLMI 346 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 + + + S+L+ + + R + + G G S+ ++ EV Sbjct: 347 DYAHNA----MSLESLLTTLKEYNPKRLVCLFG---CGGNRSKDRRFEMGEVSGRLADLT 399 Query: 404 VWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451 + S + + + I Y E + GDV+V+ K Sbjct: 400 IITSDNPRFEEPQDIINDIKTGIAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGKG 458 >gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas albilineans GPE PC73] gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate ligase protein [Xanthomonas albilineans] Length = 494 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 74/455 (16%), Positives = 145/455 (31%), Gaps = 39/455 (8%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + V+G+++DSR++ P +AF AI G G F+ A GA ++ A + + + Sbjct: 19 EVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPAPADLPASAD 78 Query: 84 PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136 V + + +A T++ +TG+ GKT+ ++LT A + Sbjct: 79 A-IAVPGLRARMGAMADQLHGHPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGTCSGSIG 137 Query: 137 --------YACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + + +P L D + +S + V +A Sbjct: 138 TLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGRVDAVHFDVA 197 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T + HL + +AKA +F + D +LL A AL + Sbjct: 198 VFTNLTRDHLDYHRDMAAYGAAKARLFAMPGLRAAVVNLDDTFGRQLLHALDPALRRIGV 257 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307 S G+ A + + ++ + + + +G N+L G + L Sbjct: 258 SSRGR-DGATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFNVDNLLAVAGALYALD 316 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 L+ P GR R ++ + + A L + H Sbjct: 317 VPPVRIAATLAQLQPIRGR--MNRLGGRDAQPLVVVDYAHTPDA----LEQALQSLRDHA 370 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418 +GR + V G G + ++ +V+++ + + Sbjct: 371 KGRLLCVFG----CGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVADILAGF 426 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 V + D+V++ K Sbjct: 427 DGMTTVQVQRERAQAIAAAIAMAGAEDIVLIAGKG 461 >gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [NC10 bacterium 'Dutch sediment'] Length = 568 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 75/365 (20%), Positives = 133/365 (36%), Gaps = 17/365 (4%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 + R R +I ITGS GKTTTK + L + N +G+ Sbjct: 200 RRFYAQATARMR-RYPGEVIGITGSYGKTTTKFITAALLHGRYPVFKTPDGVNTTMGIVR 258 Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 + + D F + E+ GEIR + ++RP I ++T + HL F E IA AK Sbjct: 259 VVREGLRDDHRFFVVEVAAYGPGEIREVCEVLRPRIGILTAVGVQHLERFGTPERIAEAK 318 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSE 268 E+ + L G +N DD L ++ G + + + + S+ Sbjct: 319 YELIDSLPPDGLAIVNADDPVCLRLAERARQEGRRVLLYGIGEDERALGVRGKDVTLSSK 378 Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328 S V+ + +G N+L ++ + P R + Sbjct: 379 GSAFRVETGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIAAGVRALAPAPKRLE 438 Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + + NANP + A+ VLSQ G +I + + E+G++ Sbjct: 439 IREEGG----VIKLIDVANANPRGAQMALEVLSQF---EGGSKILITPGLVELGQIEAEE 491 Query: 389 HIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 + L + +V L G L++A V + D + +++ + + Sbjct: 492 NRRLGRAAAAV-CDYVVLVGPQQTQPLQEGLREAGFSGSRVLIARHADEVADCLKAIVCE 550 Query: 444 GDVVV 448 GDV++ Sbjct: 551 GDVLL 555 >gi|156342934|ref|XP_001620981.1| hypothetical protein NEMVEDRAFT_v1g222497 [Nematostella vectensis] gi|156206509|gb|EDO28881.1| predicted protein [Nematostella vectensis] Length = 279 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 21/299 (7%) Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 +G +H EI FL + P IT AHL F GIE + K+E++ LEK Sbjct: 1 MGANHQKEIDFLCSIAEPDFGYITNFGKAHLEGFGGIEGVIKGKSELYNYLEKNEKTIFV 60 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 D + + YSF ++D ++ + V + ++++ + Sbjct: 61 NLDDTLQ-----NEKTKKLKRYSFSTQNSSDIKIDTIEANP-----MVIIGFNNLKIHSN 110 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 IG + A N+ + I + +A+ + P R + N+ +I ++Y Sbjct: 111 LIGIYNANNINAAITIGKYFNIEDALIKEAIESYIPSNNRSQLITKGSNE----IILDAY 166 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 NANP+SM AAI+ I + +++ +LGDM E+G+ S H + +L+ + + Sbjct: 167 NANPSSMLAAITNF--IQLITDKKKVLILGDMFELGKESIEEHKKIVTLLAETKLIS-FC 223 Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464 G + S +H+ + + + + ++ +++++K S R+++LL Sbjct: 224 IGAL---FFENKIDSPTIHFHKDFESFSKELNKDYSLENNLILIKGSRGMALERVLDLL 279 >gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. AA4] gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. AA4] Length = 519 Score = 94.2 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 163/486 (33%), Gaps = 57/486 (11%) Query: 3 PLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 PL T L +A I P V G ++ ++ + P + F + G G DF Sbjct: 22 PLATL--LARA-GARLIADRPEAADLTVTGTTLRAQHVLPGDLFAGLPGARAHGADFSDQ 78 Query: 60 AVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115 A+ GA V+ + ++ +PV D AL ++A ++ +TG Sbjct: 79 ALAAGAAAVLTDPSGADRPALRDAPVPVLVHPDPRAALGEIAAWIYGEPSLHLSVLGVTG 138 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFG 163 + GKTTT ++ L + +T IG+ P A + V ++ G Sbjct: 139 TSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMLERG 198 Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + M S + R + T ++ HL +EE +AK+ +F+G T Sbjct: 199 VTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDGRSTTE 258 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + ++ +A + G + EQ++ + G S Sbjct: 259 VVVVDSAWG-----QALLTPQTVTVSIEAGADALWRAADIEATPAGEQTFTLLGPDGLSR 313 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G N ++ I++ D D + L+ E G+ R L Q F + Sbjct: 314 AAKIPLPGTFNVANAVLAAAILASAGIDADDIVAGLA---AVEVPGRMERVYLGQEFTAV 370 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 +D ++ + L + EGR I VLG G + + ++ Sbjct: 371 VDYAHKPAAVA-----QGLDALRARTEGRIITVLG----CGGDRDTAKRPMMGEAAVRRS 421 Query: 402 SHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + ++ A++ A+ V S GD+V Sbjct: 422 DLLIVTDDNPRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLAGPGDIV 481 Query: 448 VV--KS 451 ++ K Sbjct: 482 LIAGKG 487 >gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora aurantiaca ATCC 27029] gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora aurantiaca ATCC 27029] Length = 507 Score = 94.2 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 88/471 (18%), Positives = 153/471 (32%), Gaps = 49/471 (10%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 DL + V G++ S+ + P + + A+ G G +F A + GA Sbjct: 15 LGDLADRVAATPPEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAV 74 Query: 67 LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124 ++ + VA +PV V D AL ++A T+I +TG+ GKT+T Sbjct: 75 ALLTDPAGVALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSY 134 Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168 ++ L + IG+ +G + VD + E+ Sbjct: 135 LVESGLRAAGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEV- 193 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 SH + + VR + T HL + + +AKA++F+G + LN+D Sbjct: 194 SSHALAMGRV-GGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHD 250 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D L H G T + G + + Q + G ++ Sbjct: 251 DPALRPL----HKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALP 306 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G H N L+ + ++ + D +TA + ++ GR + NA Sbjct: 307 GRHNVANALLAVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRGVVDYAHKANA 366 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 +VL + EGR I VLG G + ++ V ++ Sbjct: 367 -------IEAVLIALRDLTEGRLICVLGA----GGDRDRGKRPVMGGVAARGADVVLVTD 415 Query: 409 -----FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 A++ + V GDVV Sbjct: 416 DNPRTEDPAAIRAEVLAGAYAAATPARVIEVPGRRAAIEEAVRVAEPGDVV 466 >gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mesorhizobium sp. BNC1] gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chelativorans sp. BNC1] Length = 483 Score = 94.2 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 160/502 (31%), Gaps = 60/502 (11%) Query: 5 WTFHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + + G G + ++G++ DSR + + FFA++G DG + A Sbjct: 1 MKLGEFADILPLSGSIAG---ETTISGLASDSRRVNAGDLFFALQGSKADGAAYAADAAG 57 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 +GA ++ ++G + +PV DD L + AT++A+TG+ GKT+ Sbjct: 58 RGAVAIIA---RPGTVGDVGVPVIEADDPRHVLALASARLYGAQPATMVAVTGTSGKTSV 114 Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE--LG 168 A + P + D G+ + Sbjct: 115 AAFTRQIWEKAGLAAASIGTTGVVAPGRDEYGELTTPDPVSLHKLLRELADAGVTHASME 174 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 S G + V+ T + H+ +E +K +F+ L G + + Sbjct: 175 ASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLPKGAPAVIFA 234 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 D + K + + G+ +++ + + E++ +G +++ Sbjct: 235 DDPWSEPTEKVALAAGLQLLTVGRRGTF-LTIKRVEHERHRQRTEIEHEGMIYDIMLPLA 293 Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 G N L+ G+ D A+ AL GR + G +D ++ Sbjct: 294 GDFQVGNALVAAGLAISTGLPADKAVAALEHLKGASGRLELT-GTTEDGAQIYVDYAHKP 352 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408 + +VL + P GR I V G G + ++ V ++ Sbjct: 353 DALE-----NVLQAVRPFTTGRVIVVFG----CGGDRDPGKRPIMGEIARRLADVVIVTD 403 Query: 409 FHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSN---- 453 + A+ +A+P + + + L GD ++V K + Sbjct: 404 DNPRSEVPAEIRRAILEAVPEATEI---GDRREAIRTAVAMLNSGDTLIVAGKG-HEIGQ 459 Query: 454 ---SCGF-----YRLINLLLEE 467 + L E Sbjct: 460 EIAGTKLPFSDHEEVRRALKER 481 >gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rothia dentocariosa M567] gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rothia dentocariosa M567] Length = 572 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 71/503 (14%), Positives = 142/503 (28%), Gaps = 59/503 (11%) Query: 6 TFHDL---LQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 T +L L+A+ H + V GIS+DSR++ P + + A+ G G F A Sbjct: 33 TVTELVEHLEALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKA 92 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLG----ALNKLAVAARLRSKATIIA 112 ++ A ++ +T I ++ + V D L +L L ++ A Sbjct: 93 LEAQAHAILTDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYA 152 Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVP-----------LTLARMPVD 159 +TG+ GKTTT ML + K GV + + + Sbjct: 153 VTGTNGKTTTTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIM 212 Query: 160 VDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 + G+ M S V ++ T + HL ++ +KA++F Sbjct: 213 GERGVSHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTPE 272 Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----------LRKWKQCS 267 + D+ ++L+ LG Sbjct: 273 RTECAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVER 332 Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 + L + + + N+ ++ + + +G Sbjct: 333 DGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTA 392 Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387 +L + + L + G GR I V G E Sbjct: 393 LTPIVPGRMQLISLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGE----RDH 448 Query: 388 FHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-----------PRSIHVHYSETMD 431 L ++ + V ++ G +++A+ R+ + + Sbjct: 449 LKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPRE 508 Query: 432 GLFLFIQSSLVDGDVVVVKSSNS 454 D +++ Sbjct: 509 VAIARAIELADARDAILIAG-RG 530 >gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter sanguinis PC909] gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1] gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter sanguinis PC909] gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1] Length = 543 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 17/365 (4%) Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 LG +N + +I +TGS GKT+TK L LS T SYN +G+ + Sbjct: 179 LGFINDARRIVKSSKDLDVIGVTGSYGKTSTKHALNAILSEQFNTLMTPESYNTPMGITI 238 Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 T+ + I E+G +GEI L + P V+T++ P HL F I+ + K Sbjct: 239 TIRNFLKPIHSKFIAEMGAYKVGEINELCEIAYPKYGVLTSVGPQHLETFKTIDNVKQTK 298 Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 E+ E L + G F+N DD G +Y++G + AD++ + + + Sbjct: 299 FELIEYLPEDGIGFINIDDENIRDYYENKFQ-GKCKVYTYGIEREADYRASDIEVSEKGT 357 Query: 271 WMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 V + +E +G H N L ++G+ L V+ A+ P R + Sbjct: 358 TFNVHFKDGRVETFQTKLLGLHNIYNTLASIGLGYELGIPVEKMQMAVRKMKPVTHRLEL 417 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 R G FT+ID+++N+NP K A+ VL Q+ G+RI + M ++G + Sbjct: 418 RR----NGNFTIIDDAFNSNPVGSKMALEVLGQM----NGKRIVITPGMVDLGTAQYDLN 469 Query: 390 IDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDG 444 + N +V L G + L + ++ +E + F + + G Sbjct: 470 KAFGTYMKD-NCDYVILVGKKQTEPIYAGLMEVEYPTETIYVAENLQDAFAKMHEVVEPG 528 Query: 445 DVVVV 449 V++ Sbjct: 529 AFVLL 533 >gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] Length = 489 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 70/457 (15%), Positives = 139/457 (30%), Gaps = 59/457 (12%) Query: 27 VNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 V+GI+ DSR++ P F + K F+ AV+ GA +V + + Sbjct: 27 VSGITADSRNVKPGFVFVCLSEVAK-------KFVSDAVKAGARFIVAGSAEALPRVD-N 78 Query: 83 IPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 + KLA R R + A+TG+ GKT+ + T A IG Sbjct: 79 AQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASIG 138 Query: 142 SYNNHIG------------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + +G + TL+ + + + S G + + V+ Sbjct: 139 TLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLC-IEASSHGMAQKRLYGVK 197 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 +A T ++ H G+E+ +AK ++F + + DS +G Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSG--RYAELRRLVG 255 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + ++G + R + + +G N+L L IV Sbjct: 256 SRNTITYGINVGDVRLTRLKSSTLGHNVAVEICGKVVYDGAFPVLGKFQIPNLLCALAIV 315 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + R + +I + Y PA+++ A++ L Sbjct: 316 ---------TASGARCSDIPIDKLVSPRGRMELIGGRVIVD-YAHTPAALEHALTSLKWH 365 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417 + + V G G +++ + ++ + K+ Sbjct: 366 --GFPQKIVLVFG----CGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEI 419 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451 L + + V D +++ K Sbjct: 420 LSHCERAIEIPNRSDAIHYAVNFAVRNDHMLLIAGKG 456 >gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RCC307] gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. RCC307] Length = 494 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 150/475 (31%), Gaps = 44/475 (9%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66 H L++ +P V S DSR I P F + G DG F A+Q+GA Sbjct: 8 LHLLIRDAGLSVPQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGAT 67 Query: 67 LVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 V+ D + G + V A + ++I +TG+ GKTTT Sbjct: 68 AAVIGPDAAQQEPPAPGDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTT 127 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166 ++ + A +G+ N P F + Sbjct: 128 THLIEHLALACGSPTALMGTLANRW--PGHSRNAVHTTPFADQLQADLAAAKAAGCSMAA 185 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + R AV T ++ HL +E+ AKA++F G +N Sbjct: 186 MEVSSHALDQSRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQAVVN 245 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD L + LG + S + +A+ + + + + + Sbjct: 246 SDDLHGRQLAQR---LGDQCWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSP 302 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 +G N+L +G++ D ++AL F+ GR +R +Q + Sbjct: 303 LVGRFNLMNLLQAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHT 362 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + L P EG+ I V G G+ +S + + + V Sbjct: 363 PDGLD------NALQAARPFAEGKLICVFG---CGGDRDRSKRPQMGAIAAQLADELVVT 413 Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 S + D +P GD+V++ K Sbjct: 414 SDNPRTEDPQQILDDVVAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKG 468 >gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 489 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 75/485 (15%), Positives = 138/485 (28%), Gaps = 65/485 (13%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 + ++LL G + G+S DSR + F KG +DG +I A++ Sbjct: 1 MTRLNELL----GMLHIACDDTRILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALR 56 Query: 63 KGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLGALNKLAVAARLRS--KATII 111 KGA V+ + + V+ +DV L +I Sbjct: 57 KGAV-VLCDKKRQWRKNGQKVEATSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVI 115 Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LAR 155 ++G+ GKT+ ++T L +K IG++ + Sbjct: 116 GVSGTSGKTSVACIITHILRKQQKKTFRIGTHEVDDNQHIQAIPNTTPDSFTLANLLKEA 175 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + + E+ S + + V T I HL K ++ Sbjct: 176 IQQGFTHIVMEV--SSHAIDQNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKLRR 233 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 L+K G I +N D + L+ S A I + D L S Sbjct: 234 YLKKDGFIIINKDFPYLMKLQHLSDAKLITIGFDAAHFTIEDMHL---------SEQGAI 284 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 V +G N + + +L + I + GR + + Sbjct: 285 FTINGYSFVIPLLGKMNVYNTTEAIALCHMLNITYEQLIASCQDLPYVSGRMELMKGKK- 343 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 T++ + + A ++ +G+ V+G G L Sbjct: 344 ---HTVLLDYAHTPDA----VEKLMEFARSICQGKLYIVVG----CGGERDRSKRKLMAD 392 Query: 396 LSLYNISHVWLSGFHVLA--LKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVV 448 + + + L L Y E + + D++V Sbjct: 393 AACKYSDMAIFTSDNPRHESLSTILLDMCKTTYQNYEVVENRYFAIKYTIKIAKESDIIV 452 Query: 449 V--KS 451 + K Sbjct: 453 IAGKG 457 >gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6- diaminopimelate ligase [Streptococcus mutans NN2025] gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6- diaminopimelate ligase [Streptococcus mutans NN2025] Length = 483 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 66/464 (14%), Positives = 134/464 (28%), Gaps = 39/464 (8%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 F +++ P+ + IS DSR I FF +KG + +F+ A++ G Sbjct: 16 NFREIIDGEHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIESGL 73 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123 V D + IP+ V+++ A+ +A + K +A TG+ GKTT Sbjct: 74 TFYVAEKDY-----QVGIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAA 128 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 L + G +++ +F++ + Sbjct: 129 YFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAAANGMTHLIMEV 188 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-- 241 A + + ++ + + LL S Sbjct: 189 SSQAYLVG------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLKHSRYVI 242 Query: 242 -LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNML 297 ++ K + AD + + S+ + + + G + N Sbjct: 243 VNSQMNHFALVKEQVADQPHDFYGKYSDNQIVNSKAFSFDLTGKLAGHYDIQLTGSFNQE 302 Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + + G+ G +D ++N + Sbjct: 303 NAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVLVQKNGAKVFVDYAHNRDSLE----- 357 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412 +LS + H +G I +LG GE ++ D V++ + V L+ Sbjct: 358 KLLSVVEEHQKGTLILILGAPGNKGESRRA---DFGYVINAHPELQVILTADDPNNEDPQ 414 Query: 413 ALKDALPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451 + + I V+ S + D V++ K Sbjct: 415 LISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKG 458 >gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM 2522] Length = 526 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 126/349 (36%), Gaps = 16/349 (4%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165 +I ITGS GKT+ K + LS+ S+N +GV T+ + + I Sbjct: 178 HLKVIGITGSFGKTSVKHFMHAVLSAKFNVLMTPESFNTKLGVTRTIREKLKPYHEVFIA 237 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 E+G G++ + LV V+T I HL F ++ I K EI E L G L Sbjct: 238 EMGAKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNIKKTKYEIIETLPDNGVGVL 297 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 N DD I + + + + + + ++ Sbjct: 298 NKDDENIMSYAPYQKRDVIYYGIDAPDVDIRAKDISYSSKGMDFTVVLKNGETQTFRTKL 357 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 G + +G+ + + + R + G T+ID+S Sbjct: 358 LGKHNVYNILAAIAIGLQLGMKLSEM-----VKPIRSLDAVPHRLELKRSTGNITIIDDS 412 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 +N+NP K A+ VL + EG R+ V M E+GE + + A + ++ Sbjct: 413 FNSNPVGSKMAVDVLGSM----EGYRMLVTPGMIELGEKEYELNKEWATYAAN-KCDYII 467 Query: 406 LSG-FHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449 L G L+D L + ++ +E + + + +V++ Sbjct: 468 LVGKKQTKPLQDGLKEANYPEAQLYIAENLQDAIQQMHKVAKEKTIVLL 516 >gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense MSR-1] Length = 112 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67 H+L I G + I+ DSR + P FFA+ G DG FI AV +GA + Sbjct: 2 HNLADLIPG---NHTANPLITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVV 58 Query: 68 VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113 +V T A G+ + VD+ A A R + AI Sbjct: 59 IVAETGTQAETGT--ALLVTVDNPRRAYALAAAPLHGRQPEVMAAI 102 >gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium genitalium ATCC 33030] gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium genitalium ATCC 33030] Length = 498 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 73/481 (15%), Positives = 143/481 (29%), Gaps = 56/481 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 + +L + V+ IS+DS ++ F A+ G G F A Sbjct: 5 SLENLAEIAGARVENAPESSLSVSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASD 61 Query: 65 AGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120 A V+ + + PV V+ V L +A T+I +TG+ GKT Sbjct: 62 ASAVLTDDAGWDILRETGFERPVLVVERVRDILGDVAAEIYGHPTEHLTVIGVTGTSGKT 121 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFGIFE-- 166 TT +L L++ IG+ P V G+ Sbjct: 122 TTTYLLESGLTAAGCAVGLIGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHVV 181 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 + +S + + A T ++ HL +E+ AKA +F+ E + Sbjct: 182 MEVSSHALVLGRVDGTKFAAAGFTNLSQDHLDFHPTMEDYFEAKAILFDRAE---KAVVC 238 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD + + + ++H+ +++ A + + + + Sbjct: 239 IDDEWGQKMTQRAHSPVTVGVHNTSADCTARLDSVTESGAQDITVRIGGQDISTRIPLPG 298 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 V I + A G+ R ++ Q F ++D ++ Sbjct: 299 AFNIANTALATALADSVGIDPKVFLQGLDAAR------VPGRMERVSVGQPFVAVVDYAH 352 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 + L + +GR V+G G L + V + Sbjct: 353 KPAA-----VAAALDSLREQVDGRIGVVVGA----GGDRDHSKRPLMGAEAATRADLVII 403 Query: 407 SG-----FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVV--K 450 + A++ A+ + + + + + GD ++V K Sbjct: 404 TDDNPRTEDPAAIRAAVKQGAESVIDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGK 463 Query: 451 S 451 Sbjct: 464 G 464 >gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] Length = 518 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 145/486 (29%), Gaps = 58/486 (11%) Query: 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQK 63 D L + H + D+RS+A + FFA DG D FI A+++ Sbjct: 14 IADALTWLHAHVQPGA------HLHADTRSLAAGDVFFAYA---VDGADNHPFIEGAIER 64 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121 GA V+V + + S V + +A + ITG+ GKT+ Sbjct: 65 GAAAVLVQPEGFSGAIDPSNT-LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTS 123 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IF 165 + ++ AL+++ A IG+ G+P L Sbjct: 124 CSQWISAALTALGTRCAIIGTLGT--GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 181 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S + + IAV T + HL E +AKA +F E + Sbjct: 182 AMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAVIN 241 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285 D + LL + + R + Sbjct: 242 RDDAAGRRLLASTQGHARTIAYGLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTS 301 Query: 286 HGIGYHMAQNMLMTLGIVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQ 336 + L + ++L + A+ L+ P GR +R L Sbjct: 302 EWGDAEVEVQTLGAFNVSNLLGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQN 361 Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396 ++ + Y P +++ + L ++ G I + G G + L + Sbjct: 362 DEPLVVID-YAHTPDALEKTLEALRPMAAARGGELICMFG----CGGDRDATKRPLMGAI 416 Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 + V L+ + + + + + E L S DV+ Sbjct: 417 AEKIADGVVLTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVI 476 Query: 448 VV--KS 451 V+ K Sbjct: 477 VLAGKG 482 >gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius ATCC 11741] gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius ATCC 11741] Length = 510 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 63/479 (13%), Positives = 136/479 (28%), Gaps = 63/479 (13%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + ++ DSR ++ FF KG ++ ++ A++KGA V + Sbjct: 21 VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77 Query: 79 GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + V +V A+ L A +++ IIA TG+ GKTT+ L+ Sbjct: 78 DATG---IIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134 Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178 + + + P R V+ + +S + Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194 Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + + V I+P H+ ++ K ++ + Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKCCVINGETAYLRDVYYTA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284 + +++ ++ +D + ++ + Q + Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G + N + + A + A G+ +D Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N A + GR IAVLG + G + HV Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423 Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ G + + + ++ V + + + D+VV+ K Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482 >gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] Length = 300 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 19/303 (6%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 L + ++ + + ++ I+ DSR+ F A G D H F +G Sbjct: 1 MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122 LVVVN + S ++ V D L + LA ++ +TG+ GKT+ Sbjct: 61 CKLVVVNKE---QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117 Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168 M+ + ++K + + + + + L Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228 +S G + V +A+ + + HL +E AK+ +F L + + Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237 Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288 + + + ++S+G + A F ++ + + + +V + Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYV 297 Query: 289 GYH 291 G Sbjct: 298 GKF 300 >gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase [Lactobacillus fermentum IFO 3956] Length = 518 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 51/465 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 F + +S+ + + FF KG + D++ A+ +GA V Sbjct: 36 FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSY-----QNGATA 88 Query: 86 FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132 V ++ A+ L+ A + I ITG+ GKT+T +S+ Sbjct: 89 LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148 Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + + + + P + + + E+ S + + + Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 206 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V I+ H+ + + L + + D F E+ +A + Sbjct: 207 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 266 Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 IY FG+ + D L Q + + QL G S + ++ + + Sbjct: 267 KIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 326 Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 A + AI + + R Q T+ + + + + + Sbjct: 327 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 386 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414 Q + VLG G + DL + L+ ++ V L+ A+ Sbjct: 387 KDQQHQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 443 Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I V Y + GD+VV+ K Sbjct: 444 AAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKG 488 >gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545] Length = 624 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 12/237 (5%) Query: 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD-FILHAVQK 63 +T D+ A G + ++ D+R +A + F A+ G D H+ F+ +Q Sbjct: 81 FTASDIASATGGTLVR---DAAAGSVTTDTRDVAGGKWFLALVGETRDAHEEFVNDELQN 137 Query: 64 G-AGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITG--SVGK 119 V+ + S D AL +LA R R ++ + SVGK Sbjct: 138 TECVGVISSRPPPGSWRKG---YVQTACDPTTALQRLASDVRDRFPPDVVVVGVTGSVGK 194 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 TTT+ + AL+S+ + G++NNH+G+PLTL + P DV + ELGMS LGEI L Sbjct: 195 TTTRALTARALASLGVVHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALGEISTLA 254 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 + RP + ++T +APAHLS I +A AKAE+F+G +N DD + Sbjct: 255 KIARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADDEHVAGM 311 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 5/104 (4%) Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSE 428 +LGDM E+GE S+ H D+ E + L+G + +V ++ Sbjct: 521 FVLLGDMLELGEASKQHHEDVIEACLDAGFDKIGLAGPEFVEALRVFFPKRNVQSVVIAK 580 Query: 429 TMDGLFLFIQ--SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 ++ L+ I+ + V+VK S +++ L A Sbjct: 581 DVEDLWDIIEGTQIIGPNARVLVKGSRGMKMDYIVDRLRSREGA 624 >gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 518 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 51/465 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 F + +S+ + + FF KG + D++ A+ +GA V Sbjct: 36 FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSY-----QNGATA 88 Query: 86 FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132 V ++ A+ L+ A + I ITG+ GKT+T +S+ Sbjct: 89 LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148 Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + + + + P + + + E+ S + + + Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 206 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V I+ H+ + + L + + D F E+ +A + Sbjct: 207 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 266 Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 IY FG+ + D L Q + + QL G S + ++ + + Sbjct: 267 KIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 326 Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 A + AI + + R Q T+ + + + + + Sbjct: 327 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 386 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414 Q + VLG G + DL + L+ ++ V L+ A+ Sbjct: 387 KGQQHQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 443 Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I V Y + GD+VV+ K Sbjct: 444 AAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKG 488 >gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus megaterium DSM 319] gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus megaterium DSM 319] Length = 287 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---V 70 + I +N ++ S+ + FF+IKG + DGH +I A+ +GA V + Sbjct: 11 LSIKHIFGPASQTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVAVFGTSI 70 Query: 71 NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128 + S VDDV + + + I I +TG+ GKTT + Sbjct: 71 EKLRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRS 130 >gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e ligase [Dichelobacter nodosus VCS1703A] gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e ligase [Dichelobacter nodosus VCS1703A] Length = 482 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 72/474 (15%), Positives = 145/474 (30%), Gaps = 46/474 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T H+LL A+ G S V ++ +S+DSR + Q + A +G Y DF + Sbjct: 1 MKTTHELLTAL-GLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEIN- 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121 + V+ + ++ +A K I +TG+ GK++ Sbjct: 59 -CAAIFYEPPYQNPPPHA----ITVERLSEKVSAIADLFYDHPAQKLWITGVTGTDGKSS 113 Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------LGMSHL 172 + A + G+ N T + +S Sbjct: 114 LVHFIAQATGAAMLGTIGYGNLNALQPASHTTPDAITTQQQLAHFVAQGNQAVAMEISSH 173 Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232 + V +AV T ++ HL + +E+ AKA++F +N DD Sbjct: 174 ALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFA--FPIKHAVINIDDPHG 231 Query: 233 ELLKAKSHALGIKTIYSFGKSK------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 L ++ I++ + + + + + +++ V H Sbjct: 232 RRLISEHRINSSACIWAVSAKGAHNAAAHHNVCAHDYCLHQNGVTFTLAIDDETIAVETH 291 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 + N+L ++ + + L+ H GR + + + Sbjct: 292 LLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQALAIVDYAHTA 351 Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406 A SVL+ I PH G+ + G G L + V + Sbjct: 352 GA-------IESVLTGIRPHISGKLWLIFG----CGGNRDRGKRALMAQAAERFADAVIV 400 Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 + + + +H + + + + L GD V++ Sbjct: 401 TDDNPRTEDPAAIIADVMQGFEYPEKIHVIQPREQAIHYALAQLHAGDAVLITG 454 >gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus downei F0415] gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus downei F0415] Length = 483 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 143/474 (30%), Gaps = 61/474 (12%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 F D+ QG + +S DSR + P FFA KG + +F+ AV+KG Sbjct: 16 NFRDIAY--QGDYAYNWSGVTFDHLSYDSRHVTPSSLFFA-KGAVFK-KEFLQGAVEKGL 71 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123 + D + IP V+D+ A++ +A+A + K I+A TG+ GKTT Sbjct: 72 AFYIAEKDY-----EVGIPAILVNDIKQAMSLIAMAFYDNPQDKLKILAFTGTKGKTTAA 126 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-------------- 169 +K G +++ +FE+ Sbjct: 127 YFAYNIFKQSQKPAMLSTMNTTLDGETFFKSQLTTPESLDLFEMMAQAVENGRSHLIMEV 186 Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNY 227 S + + + + V I+P H+ E+ K + E + +N Sbjct: 187 SSQAFLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSR---AVVVNS 243 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287 F +L+ + ++ ++ + + + + + Sbjct: 244 GMDHFAILRDQVASIPHDFYGELSDNQIKNSRAFDFDLTGKLAGHYDIQLIGDFNQE--- 300 Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347 L + G+ G +D ++N Sbjct: 301 ----------NALAAGLACLRLGASPADIQRGIAETTVPGRMEVLTQTNGAKVFVDYAHN 350 Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 + +LS ++ H G+ I +LG GE ++ D V++ + V LS Sbjct: 351 GDS-----LKKLLSVVAQHQSGKNILILGAPGNKGESRRA---DFGAVINHHPDLEVILS 402 Query: 408 G-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451 + + I V + D V++ K Sbjct: 403 ADDPNKEDPQVICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKG 456 >gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Cupriavidus taiwanensis LMG 19424] gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Cupriavidus taiwanensis LMG 19424] Length = 522 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 95/494 (19%), Positives = 154/494 (31%), Gaps = 50/494 (10%) Query: 2 NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFI 57 PL QA + +S D+R ++ + FFA G DG +I Sbjct: 4 KPLLPLEVTAQASNALAWLRTNVAAAAQLSGDTRRLSRGDVFFAYVLGNDRLATDGRPYI 63 Query: 58 LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115 A+ GAG VV D ++P V + +A + ITG Sbjct: 64 AQAIAAGAGAVVYEADGFDWPFGDAVPHLAVSRLHQLAGPIAAGWHGNPARGLAVTGITG 123 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165 + GKT+ + L L + A IG+ G P L + Sbjct: 124 TNGKTSCSQWLARVLQATGTPCATIGTLGT--GFPDALQATGFTTPDAVQLQASLATLHD 181 Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 + +S G + +AV+T + HL + E +AKA +F Sbjct: 182 AGARAVAMEVSSHGLEQERVAGTHFSVAVLTNLTQDHLDYHGSMAEYEAAKARLFRWDGL 241 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNADFQLRKWKQCSEQ 269 + D LL A + A+ + +G + A + + + Sbjct: 242 RTAVINRDDAMGQRLLAADAAAVVAPHVIEYGIDGPAAATVRGPRGAWLRATSVRATATG 301 Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 + + E+ IG N+L LG D AI AL P EGR + Sbjct: 302 TAFHIDGSFGHAEMATPMIGAFNVSNLLAVLGAALANGVAWDAAIAALRALAPVEGRMEL 361 Query: 330 YRCALNQGFFT-LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388 + A + L Y P +++ ++ L ++ GR V G G Sbjct: 362 FGAAGHDAAQAPLAVVDYAHTPDALEQTLAALRPVAQARNGRLWCVFG----CGGDRDPI 417 Query: 389 HIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQS 439 L ++ V L+ + A+ D + E L+ Sbjct: 418 KRPLMGAVAERLADEVVLTSDNPRSEDPQDILDAIADGMTERARGRQIEDRAAAILYAVR 477 Query: 440 SLVDGDVVVV--KS 451 DVV+V K Sbjct: 478 HAAPADVVLVAGKG 491 >gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis ATCC 367] gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC 367] Length = 504 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 77/467 (16%), Positives = 142/467 (30%), Gaps = 56/467 (11%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 G++ DSR + F KG ++ D++ A++ GA + D +S Sbjct: 24 DDTDFVGLTYDSRQVQANTLFVC-KGFNF-SVDYLHSAIENGATAYLAEEDY-----GVS 76 Query: 83 IPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 +PV V +V AL+ A ++ +I TG+ GKTT+ + T LS + Sbjct: 77 VPVILVKNVRKALSLAAQLYFDFPQNDLFVIGYTGTKGKTTSTYLTTNILSHAFPQQVAM 136 Query: 141 GSYNNHIGVPLTL------------------ARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 S NHI P R VD + + ++ + + + Sbjct: 137 FSTINHIVGPKPQDQYRAHLTTAESFDLFKEMRQAVDNGQKVLVMEVASQAYLLDRVYGL 196 Query: 183 RPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 + + I+P H+ K ++ S Sbjct: 197 TFDVGIFLNISPDHIGVNEHPNFANYLFCKMQLLLNSRNCIINAETDHFDEIYAAAKVST 256 Query: 241 ALGIKTIYSFGKSK----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 Y F +++ Q + + + +L + G N Sbjct: 257 DPEHIFTYGFNQAQASLSITSRQATLTDSHFDLTVHDERLAALATTYDVSVPGDFNQSNS 316 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 + + A V L+ + T+ + Y + SM A Sbjct: 317 AAAILASHLAGAQVADMQYGLAHTRIPGR----MESITTKHHGTVYID-YAHDWGSMNAL 371 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----G-FHV 411 +S L P + R IAVLG + GE + +L+ G Sbjct: 372 LSFLHTQFP--DHRVIAVLGSTGDKGEDR----REGFAKALNDYADAAYLTTDDPGHEDP 425 Query: 412 LALKDALPRSIHVHYSET-----MDGLFLFIQSSLVDGDVVVV--KS 451 +A+ + I +T + ++ + D+VV+ K Sbjct: 426 MAIAREIDSHIDHTKVKTTIIAQRETAIAQAITTATNTDLVVLAGKG 472 >gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halomonas elongata DSM 2581] gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halomonas elongata DSM 2581] Length = 503 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 71/447 (15%), Positives = 140/447 (31%), Gaps = 41/447 (9%) Query: 33 DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92 DSR +A + F A+ G DG DFI A++ G V+ S V ++ + Sbjct: 37 DSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLA-HAEPGGSASADARVIHLEGLA 95 Query: 93 GALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 G L +L + +I +TG+ GK++ + + + +G+ + L Sbjct: 96 GQLGELGRSLFEVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLGHGRPGAL 155 Query: 152 TLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 R+ + L S + R AV T ++ HL Sbjct: 156 REGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVFTNLSRDHL 215 Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 + +A + +N DD L+ A + + G + Sbjct: 216 DYHGSM-AAYAAAKARLFRRPELRLAVVNGDDPLARLMLA--GLPAGVRVLAVGDDEAVT 272 Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317 ++ + + + + +G N+L+ + + L D++ A Sbjct: 273 LRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLEALFAAA 332 Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 + P GR + + T++ + Y P +++ A+ L P +GR + G Sbjct: 333 AELAPVPGR---MQVLGDARGPTVVID-YAHTPDALENALQALRAHLPD-QGRLWCLFG- 386 Query: 378 MCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSET------- 429 G + L + V A+ I SE+ Sbjct: 387 ---CGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARV 443 Query: 430 ---MDGLFLFIQSSLVDGDVVVV--KS 451 + + DV+++ K Sbjct: 444 LGGRAAAIRETIAEVDAEDVILIAGKG 470 >gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91] gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91] Length = 630 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 107/381 (28%), Positives = 153/381 (40%), Gaps = 21/381 (5%) Query: 99 AVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157 A RL + I ITGS GKTTTKE+ + LS S N I V T+ Sbjct: 29 AKLHRLSLTQTQFIGITGSAGKTTTKELCNLILSGSYSVMTTPQSLNTPIIVAETMLATE 88 Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG--IEEIASAKAEIFE 215 F I ELG G + L RP I V+T I H F G ++ IA KA++ E Sbjct: 89 KKHKFCIMELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAVEKAKLIE 148 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEV 274 L K GT LN DD + + + A I GK+ + +L K + E + V Sbjct: 149 ALSKNGTAILNMDDPRVKAIGERCKARVIW----VGKNPESTIRLCKVTSRWPEPLKLTV 204 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 QGK EV H G +A ++L LG+ ++ AI L P GR + Sbjct: 205 TYQGKLYEVPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAGRM---QIVT 261 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394 + T I + A + ++ + R+IAV+G + + S + A Sbjct: 262 GEDDVTFIRDDMKA---PYWSLLAPFKFLKEADALRKIAVVGSISDFSGDSTMIYKRCAR 318 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSS 452 L Y V G + A T+ F+Q +L GD+V++K S Sbjct: 319 ELREYA-DMVIFVGDNAHRALRARKDENDSTLQGFLTLKEASSFLQKTLRPGDLVLLKGS 377 Query: 453 N-SCGFYRLINLLLEEFPAIQ 472 N S RL +L+ + IQ Sbjct: 378 NKSDHLQRL---ILDRYKPIQ 395 >gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 510 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 62/479 (12%), Positives = 136/479 (28%), Gaps = 63/479 (13%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + ++ DSR ++ FF KG ++ ++ A++KGA V + Sbjct: 21 VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77 Query: 79 GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + V +V A+ L +++ IIA TG+ GKTT+ L+ Sbjct: 78 DATG---IIVTNVQKAMALLGAVFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134 Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178 + + + P R V+ + +S + Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194 Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + + V I+P H+ ++ K ++ ++ Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKRCVINGETAYLRDVYYTA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284 + +++ ++ +D + ++ + Q + Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G + N + + A + A G+ +D Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N A + GR IAVLG + G + HV Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423 Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ G + + + ++ V + + + D+VV+ K Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482 >gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora DSM 43833] gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora DSM 43833] Length = 524 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 80/456 (17%), Positives = 141/456 (30%), Gaps = 39/456 (8%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 + GISIDSR + + + A+ G G DF A GA ++ + + +PV Sbjct: 35 VITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAGRERAVATGLPV 94 Query: 86 FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 V D L ++A TII +TG+ GK+TT + L + IG Sbjct: 95 LVVPDPRAVLGRVAAWVYGNPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGLIGGV 154 Query: 144 NNHIGVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRP------------HIAVI 189 +G AR+ P + M G + +A+ Sbjct: 155 EIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYDVAIF 214 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL +++ +AKA +F + + +N DD + L + A T +S Sbjct: 215 TNLSQDHLDFHRDLDDYFAAKARLFT-PDHSRLGVVNIDDRYGRELAER--AKIPITTFS 271 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-----------GKSMEVVHHGIGYHMAQNMLM 298 +AD+++ + ++ S V + V + + Sbjct: 272 PSGDADADWRVADVRLGADGSVFRVVGPGGVETDVSVALPGAFNVANALAALVALVEAGV 331 Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358 + + A + S A S + + Sbjct: 332 PVPAAVAGIGMTTCVPGRMERVPGPGDIQVFVDYAHKPAAVESVLRSLRAVMGSGRRLVI 391 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDA 417 V+ G+R M E + + + + L+ AL+ Sbjct: 392 VVGCGGDRDRGKRPL----MGEAAARLADA--AIFTNDNPRSEDPLAILAAMLSGALRVP 445 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 HV S+ GDVV+V K Sbjct: 446 AAERAHVIVEPDRAAAIDLAISTARSGDVVLVAGKG 481 >gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Lactobacillus salivarius CECT 5713] Length = 510 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 63/479 (13%), Positives = 137/479 (28%), Gaps = 63/479 (13%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + ++ DSR ++ FF KG ++ ++ A++KGA V + Sbjct: 21 VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77 Query: 79 GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + V +V A+ L A +++ IIA TG+ GKTT+ L+ Sbjct: 78 DATG---IIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134 Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178 + + + P R V+ + +S + Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194 Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + + V I+P H+ ++ K ++ ++ Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKRCVINGETAYLRDVYYTA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284 + +++ ++ +D + ++ + Q + Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G + N + + A + A G+ +D Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N A + GR IAVLG + G + HV Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423 Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ G + + + ++ V + + + D+VV+ K Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482 >gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microcystis aeruginosa NIES-843] gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Microcystis aeruginosa NIES-843] Length = 497 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 87/480 (18%), Positives = 151/480 (31%), Gaps = 46/480 (9%) Query: 5 WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61 +LL I S P + + GIS +S + P + F + G DG +F A+ Sbjct: 1 MKLQELLTTIPLVSPISSPIALETEITGISTNSHACQPGDLFIGLPGTRVDGGEFWRSAL 60 Query: 62 QKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118 + G ++ V V D++ A +A +I +TG+ G Sbjct: 61 ETGAVAAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTLKLIGVTGTNG 120 Query: 119 KTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTL-------ARMPVDVDF 162 KTTT ++ LS T + P + + Sbjct: 121 KTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEI 180 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + E+ SH + P V T + HL +E+ +AKA++F G Sbjct: 181 AVMEV-SSHALAQGRVQGCTFPVT-VFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGK 238 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N DD++ + L A + T ADF + + + Sbjct: 239 AIINLDDAYGQRLAASLSPQQVLTYSVC--DARADFYTKDLHYQPTGVQGVMVTPQGEIA 296 Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 +G + N+L + V D+ I + F GR +R A +Q ++ Sbjct: 297 FASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERVSIAPDQDISVIV 356 Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 D ++ + +VL P GR I V G G L ++ Sbjct: 357 DYAHTPDSLE-----NVLKASRPFISGRMICVFG----CGGDRDRTKRPLMGKIAAELAD 407 Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + +P I V + GD V++ K Sbjct: 408 LAIVTSDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIAGKG 467 >gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius UCC118] gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactobacillus salivarius UCC118] Length = 510 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 63/479 (13%), Positives = 137/479 (28%), Gaps = 63/479 (13%) Query: 19 IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78 + + ++ DSR ++ FF KG ++ ++ A++KGA V + Sbjct: 21 VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77 Query: 79 GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 + V +V A+ L A +++ IIA TG+ GKTT+ L+ Sbjct: 78 DATG---IIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134 Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178 + + + P R V+ + +S + Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194 Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + + + V I+P H+ ++ K ++ ++ Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKRCVINGETAYLRDVYYTA 254 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284 + +++ ++ +D + ++ + Q + Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G + N + + A + A G+ +D Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 ++N A + GR IAVLG + G + HV Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423 Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 L+ G + + + ++ V + + + D+VV+ K Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREIAIEKAIKMSTNNDIVVLAGKG 482 >gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp. ART55/1] Length = 507 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 61/460 (13%), Positives = 131/460 (28%), Gaps = 54/460 (11%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + I+I+S+ + P F KG + D++ A+ +GA + + + I Sbjct: 29 DITPSHITINSKDVVPGTFFVC-KGASFK-EDYLKSAIAQGAIVYLSQQKY----DDVDI 82 Query: 84 PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-I 140 P V+D+ A+ A T + ITG+ GKTT ++ L Sbjct: 83 PYIIVNDIRKAMALAARWFFGNPGDNMTKVGITGTKGKTTVTFVMKDILDKYTDNRCSAF 142 Query: 141 GSYNNHIGVPLTL--------ARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHI 186 ++ +G + + D + E + +S + + Sbjct: 143 STHEIDVGTKVFETTLTTPEPIELQTYFDMAVDEGCTHCIMEVSSQAMKMNRIYGEHYKV 202 Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 V T I H+S + +E+ K + + H + Sbjct: 203 GVFTNIDYDHISPTEHASMEDYLGCKVSFLKQCDNVVLYSDTRYFETIYNEVRDKHVVVY 262 Query: 245 KTIYSFGKSKNADFQL----------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294 + S K + D S+ E+ G++ + IG + + Sbjct: 263 GSKESIEKLMSRDDDFFEKDTDFASIHNEDLTDHNSYFELIYGGENRAYNTNLIGDYNVE 322 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N++ + ++ D ++ + + T + + Y N SM Sbjct: 323 NIVAAIISSLLIGIPNDQIRSSIRDVYVPGRL-----QVYHWKDRTFMID-YAHNYISMY 376 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411 ++ V G G + L+ V L+ Sbjct: 377 RLYEMVK--KTMKPKSITVVFG----CGGERYKKRREDMGRLAEQYADKVVLTMEDPGFE 430 Query: 412 --LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447 + + + + + + G++V Sbjct: 431 SCEEICKEIKQYITKPCYIIVDREQALTRALDEAQPGELV 470 >gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus salivarius SK126] gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus salivarius SK126] Length = 481 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 75/458 (16%), Positives = 137/458 (29%), Gaps = 63/458 (13%) Query: 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 + + +S DSR + P FFA KG + +F+ +AV+ G V D + I Sbjct: 32 EVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVKAGLSFYVAEKDY-----QVGI 84 Query: 84 PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141 P V D+ A++ +A A + K ++A TG+ GKTT L K Sbjct: 85 PAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQNHKPAMLST 144 Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185 G + + + I E+ S + + + Sbjct: 145 MNTTLDGKNFFKSILTTPESLDLFRMMAEAVANGMTHLIMEV--SSQAYLTKRVYGLTFD 202 Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 + V I+P H+ E+ K + E F A Sbjct: 203 VGVFLNISPDHIGPIEHPTFEDYFYHKRLLLENSRVVIVNSGMDHFDFIAEEVA------ 256 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + + + + + IG N + Sbjct: 257 -------DKEHDFYGKNSDNAVKHGSGFSFKASGKLAGDYDIQLIGDFNQDNAMAAGLAC 309 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L A++ + ++ + T +D ++N + +L + Sbjct: 310 LRLGANLQDIKEGIAQTSVPGRMEVLTQTNG---AKTFVDYAHNGDS-----LDKLLQVV 361 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSG----FHVLALKDAL 418 + H +G +LG GE + D VL+ Y ++ + + LA+ + Sbjct: 362 TSHQDGHISLILGAPGNKGESRRK---DFGHVLNTYPDVDIILTADDPNKEDPLAICQEI 418 Query: 419 PRSI--HVHYSETMDGLFLFIQSS-LVDGDVVVV--KS 451 I V + S + D VV+ K Sbjct: 419 ASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKG 456 >gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 518 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 51/465 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 F + +S+ + + FF KG + D++ A+ +GA V Sbjct: 36 FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSYQNE-----ATA 88 Query: 86 FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132 V ++ A+ L+ A + I ITG+ GKT+T +S+ Sbjct: 89 LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148 Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + + + + P + + + E+ S + + + Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 206 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V I+ H+ + + L + + D F E+ +A + Sbjct: 207 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 266 Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 IY FG+ + D L Q + + QL G S + ++ + + Sbjct: 267 KIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 326 Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 A + AI + + R Q T+ + + + + + Sbjct: 327 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 386 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414 Q + VLG G + DL + L+ ++ V L+ A+ Sbjct: 387 KGQQYQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 443 Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I V Y + GD+VV+ K Sbjct: 444 AAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKG 488 >gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum 28-3-CHN] gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum 28-3-CHN] Length = 516 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 73/465 (15%), Positives = 143/465 (30%), Gaps = 51/465 (10%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 F + +S+ + + FF KG + D++ A+ +GA V Sbjct: 34 FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSY-----QNGATA 86 Query: 86 FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132 V ++ A+ L+ A + I ITG+ GKT+T +S+ Sbjct: 87 LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 146 Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 + + + + + P + + + E+ S + + + Sbjct: 147 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 204 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 I V I+ H+ + + L + + D F E+ +A + Sbjct: 205 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 264 Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 IY FG+ S + D L Q + + QL G S + ++ + + Sbjct: 265 KIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 324 Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359 A + AI + + R Q T+ + + + + + Sbjct: 325 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 384 Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414 Q + VLG G + DL + L+ ++ V L+ A+ Sbjct: 385 KGQQHQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 441 Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 + I V Y + GD+VV+ K Sbjct: 442 AAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKG 486 >gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leptospirillum rubarum] Length = 509 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 71/467 (15%), Positives = 145/467 (31%), Gaps = 55/467 (11%) Query: 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84 V +S DSR + F G + +F+ A+ +GA +V + I S Sbjct: 28 KVLSLSDDSRQVENGALFLIRPGEGF-RWEFVDEALDRGASYLVADRKAFPEIDSRPALS 86 Query: 85 --------VFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134 + V+++ A+ +LA + +I +TG+ GKTT+ + + Sbjct: 87 SRIRESAGLSLVENLPRAVGQLASSWWGFPSSFLKVIGVTGTNGKTTSSFLTRSVCRAGG 146 Query: 135 KTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFELGMSHLGEIRFL 178 IG+ +G T + + E+ SH + L Sbjct: 147 LPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEV-SSHALDQDRL 205 Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 + T + HL +E A K ++E + + + + + + Sbjct: 206 -AGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARL 264 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 AK + + ++G+ +A + + ++ M + G++ QN+ Sbjct: 265 AKELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNI 324 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L +G L ++ + + GR +R + +A Sbjct: 325 LGAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPTGFSVIVDYAHTDDA-------L 377 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411 ++LS + P G+ I V G G ++ V L+ + Sbjct: 378 SNLLSAVRPVTRGKVITVFG----CGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENP 433 Query: 412 LALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ D + + GD VV+ K Sbjct: 434 ESILDEIEPGLRETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKG 480 >gi|330895231|gb|EGH27569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 161 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 +ID++YNANPAS+ AA+ +L+ + GR + VLGD+ E+G+ ++ H ++ + Sbjct: 36 RVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-G 90 Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459 +S ++ G + A H ++ + L + + +++K S S Sbjct: 91 KVSALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEH 148 Query: 460 LINLL 464 ++ L Sbjct: 149 VVAAL 153 >gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 641 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 80/260 (30%), Gaps = 26/260 (10%) Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70 ++A G +I + Q VN +SIDSR + F A+ G DGH + A+ +GA VV+ Sbjct: 27 IEATNGVAIRLAMQ--VNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVL 84 Query: 71 NTDMVASIGS-----LSIPVFGVDDVLGALNKLAVAAR------LRSKATIIAITGSVGK 119 I + LS V V L L + Sbjct: 85 ENLPPELIEADQTDLLSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTT 144 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA------------RMPVDVDFGIFEL 167 +L + +P ++ + + + Sbjct: 145 AMITWLLNKVDYPAGSIGTLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVC-M 203 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 +S ++ + T HL +E A AKA +F GL K T LN Sbjct: 204 EVSSQAAVQHRVDALAWQTMTFTNFTVDHLDYHHTVENYALAKASLFRGLSKAATAVLNA 263 Query: 228 DDSFFELLKAKSHALGIKTI 247 DD L + A + Sbjct: 264 DDPLAYYLAQLTQAQKVFYY 283 >gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharomonospora viridis DSM 43017] gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharomonospora viridis DSM 43017] Length = 524 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 82/486 (16%), Positives = 146/486 (30%), Gaps = 57/486 (11%) Query: 3 PLWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59 PL T + +A + V G ++ ++ + P + F A+ G G DF Sbjct: 27 PLTTL--VARA-DARLVADPAVAESVRVTGATLRAQHVLPGDLFAALPGARAHGADFTAD 83 Query: 60 AVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115 AV GA V+ + + ++ +PV D G L +A T ++ ITG Sbjct: 84 AVAGGAVAVLTDEEGASRPAVRESGLPVLIHPDPRGVLGSVAAWIYGEPSLTLSVLGITG 143 Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFG 163 + GKTTT + L + IG+ IG P A V+ G Sbjct: 144 TSGKTTTSYFVESGLRAAGYHTGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVERG 203 Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + + M S + R + T ++ HL +E+ SAK+ +F+G Sbjct: 204 VTHVAMEVSSHALALGRVNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDGRSTHE 263 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + ++ AL + ++D R + Sbjct: 264 IVVVDSAW---------GQALVTPRTVTVSTEPDSDAGWRATDITLTPGGEQSFTLHAPD 314 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 + + + + + + V + A+ R FT Sbjct: 315 GRKAQAVLPLPGEFNVANAVLAAAILDTVGVDLDAVLEGLATVEVPGRMERVYLGQPFTA 374 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 + + + A L + EGR I V+G G + + + Sbjct: 375 VVDYAHKPAA----VTQALRALRARTEGRLITVIGS----GGDRDTAKRPMMGEAAARGS 426 Query: 402 SHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447 V ++ A+++A+ V GDVV Sbjct: 427 DLVIVTDDNPRSEDPAAIREAILAGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVV 486 Query: 448 VV--KS 451 V K Sbjct: 487 FVAGKG 492 >gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 483 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 71/459 (15%), Positives = 133/459 (28%), Gaps = 63/459 (13%) Query: 23 PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 + IS DSR + FFA KG + +++ A+QKG V D L Sbjct: 32 ENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQAIQKGLPFYVSQVDY-----ELD 84 Query: 83 IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140 IP V D+ A++ +A+ K IIA TG+ GKTT L K Sbjct: 85 IPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTTAAYFAYNILKQSHKPAMFS 144 Query: 141 GSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLVRP 184 G + +++ + I E+ S + + + Sbjct: 145 TMNTTLDGKTFSKSKLTTPESLDLFKMMATAVDNGMTHLIMEV--SSQAYLVDRVYGLTF 202 Query: 185 HIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 + I+P H+ E+ K + + A Sbjct: 203 DVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDHFKVVAEQVA----- 257 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 + + + +++ + IG +N L Sbjct: 258 --------DLPHDFYGKDSDNTIENGRTFDFDVTGKLAGHYDIQLIGSFNQENALAAGLA 309 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 L + K ++ + +D ++N + +LS Sbjct: 310 CLRLGTSPEDIKKGIAETSVPGRMEVITQANG---AKVFVDYAHNGDSLE-----KLLSV 361 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417 + H G +LG GE ++ D A V++ + V L+ A+ + Sbjct: 362 VEEHQTGNLHLILGATGNKGESRRA---DFARVINAHPNLQVILTADDPNYEDPKAIAEE 418 Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451 + ++ + + S D V++ K Sbjct: 419 IASQVNRPLEIEVDREKAIAKAMSLTQTADDAVIIAGKG 457 >gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter alkaliphilus AHT 1] gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter alkaliphilus AHT 1] Length = 502 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 59/479 (12%), Positives = 118/479 (24%), Gaps = 46/479 (9%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 + T + + I P ++GI+ S + P + FF + G G ++ AV Sbjct: 1 MKTLGSITDVLLHKKISGSPDLEISGIAYHSGKVRPGDLFFCLPGTRSHGRRYVEEAV-- 58 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS------- 116 V + S V V DV AL ++ + I + Sbjct: 59 --AAGAVAVVSDMAELETSATVVTVPDVRMALALVSACFYDYPSRELAMIGVTGTNGKTT 116 Query: 117 ---------VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +L I+ + + R D + Sbjct: 117 TTYLIDALLQNSGAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTM 176 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224 +S T V+T I HL + ++K G Sbjct: 177 EVSSHALAWHRTIGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRP 236 Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 + + + +G S + + K + ++ E+ Sbjct: 237 RRAVINGDDKHWQHFADQTPGEVMLYGLSNHCHVRANDVKVERDAVNFRLETPVGGTEIT 296 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 G N L + + + + +V G R+ FT+I + Sbjct: 297 LKMTGLFSVYNSLAAISVGLLEG---IDLARIKAVMESVAGVPGRFELVDAGQNFTVIVD 353 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 Y P ++ + + +P + V G G L + + Sbjct: 354 -YAHTPDGLENVLQAAREFAPAR---VLTVFG----CGGDRDRTKRPLMGEAAGKYSDYC 405 Query: 405 WLS-----GFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451 ++ + D + + DVV++ Sbjct: 406 IVTSDNPRSEDPEKIIDEILPGLENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITG 464 >gi|226323561|ref|ZP_03799079.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758] gi|225208245|gb|EEG90599.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758] Length = 173 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/129 (28%), Positive