RPSBLAST alignment of GI: 254781101 and protein with PDBid: 1j6u

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score = 87.2 bits (215), Expect = 6e-18
 Identities = 62/422 (14%), Positives = 129/422 (30%), Gaps = 45/422 (10%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               LV+       +   +       +P+           K       R K    A+TG+
Sbjct: 70  YDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLK-------REKKEEFAVTGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L  ++K+          I   L            ++EL  S      
Sbjct: 123 DGKTTTTAMVAHVLKHLRKSPTVF---LGGIMDSLEHGNYEKGNGPVVYELDESEEFFSE 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           F      P+  +IT     HL N+        +    FE + +   + + + +       
Sbjct: 180 F-----SPNYLIITNARGDHLENYGNSLTRYRSA---FEKISRNTDLVVTFAEDELTSHL 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                   K  Y+      +  + +   + + + ++E++L            G+H   N 
Sbjct: 232 GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKL---------KVPGFHNVLNA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L  D+   ++AL  F     R            + + D  Y   P  ++  
Sbjct: 283 LAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD--YAHTPDEIRNL 340

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGFHV 411
           +    ++  + +   I        +     +F       D   V  +Y+      +G   
Sbjct: 341 LQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGISG 400

Query: 412 LALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + D+L       ++ E +  L   I  S+ +  V +   +            +E + +
Sbjct: 401 KMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGD--IIYSSRRFVERYQS 456

Query: 471 IQ 472
            +
Sbjct: 457 SK 458