BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781101|ref|YP_003065514.1|
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter
asiaticus str. psy62]
(472 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA
Sbjct: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT
Sbjct: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH
Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH
Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL
Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL
Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR
Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ
Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%)
Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81
+N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S
Sbjct: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88
Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135
+ P+ VD+ L+ A + I+A+TG+ GK++ + LSS +
Sbjct: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
Query: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181
+ I S+ +N + P+ LA+ V V+ L L I+ +
Sbjct: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240
T + H+ + +AK +FE L K + DD++ + + ++H
Sbjct: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
G + + S G + L+K + + + ++GK + + G N L+
Sbjct: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
G+ + D ++ L H GR + + ++G +D ++ +N M +L
Sbjct: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373
Query: 361 SQISPHGEGRRIAVLG 376
I GR I V G
Sbjct: 374 KNIRTITSGRIIVVFG 389
>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 474
Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 39/367 (10%)
Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158
+A +R + +I +++G+ GKTTT ++ L K I G N G T AR+
Sbjct: 100 LAGLMRCRKSI-SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYG---TNARIGT 155
Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
++ + E S IR + +V V+T I P HL + I +A + + +
Sbjct: 156 S-EWIVVEADESDGTFIRLPSDIV-----VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIP 209
Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
G + D L A+ + + I ++G+ AD + ++ S +S +V +QG
Sbjct: 210 FYGFAVVCMDHPEVRSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQG 266
Query: 279 ---KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
K + V+ IG H N ++ + L + K L+ F G +R+
Sbjct: 267 NVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASF---SGIKRRFT 323
Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388
+ D+ Y +P + + ++ + QI P R+I + LS F
Sbjct: 324 LVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICP----RKIIAIHQPHRYSRLSTLFDQF 378
Query: 389 -----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441
D+ + +Y+ + GF L + H +Y ++ D L I +
Sbjct: 379 SSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIA 438
Query: 442 VDGDVVV 448
GD ++
Sbjct: 439 EPGDFII 445
Score = 23.5 bits (49), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
I LS+P+ G ++ A +AVA +L + K+ L + S IK+ +
Sbjct: 275 IKDLSLPLIGEHNISNACASIAVAYKL-----------GLSSEDVKKGLA-SFSGIKRRF 322
Query: 138 ACIGSYNN 145
+G +N+
Sbjct: 323 TLVGVWND 330
>gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
str. psy62]
Length = 425
Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT----AIKALSVFHPKEGRGKRY 330
Q++G M+ Y + M LG +++ D T AI LSVF+ E G+
Sbjct: 297 QMRGAIMD-------YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
C G+ + E A K I +L ++S + EGR I LGD
Sbjct: 350 PCREGTGWMMRVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGD 395
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 32.3 bits (72), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
+++G + R S ++ IA+TG+ GK++T +++ L K Y +IG
Sbjct: 94 EIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLR--KNGYDV--QLGGNIG 149
Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
+P+ F + E + LT + P I V+ I+P HL +E +
Sbjct: 150 LPILNLEYFSPNRFYVIECSSYQIE----LTPTIDPSIGVLLNISPDHLDRHHTLENYVN 205
Query: 209 AKAEI 213
K +I
Sbjct: 206 IKKKI 210
>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
asiaticus str. psy62]
Length = 265
Score = 27.7 bits (60), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI-----GSYNNHIGVPLTLARMPV 158
K+ II I G VGKTTT L+ AL++I + I G+ + +G+ L
Sbjct: 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL------Y 58
Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
D + ++L + + L P++++I P+ + + GIE I + + L+
Sbjct: 59 DRKYSSYDLLIEEKNINQILIQTAIPNLSII----PSTM-DLLGIEMILGGEKDRLFRLD 113
Query: 219 KTGTIFLNYDDSFF 232
K ++ L D S+
Sbjct: 114 KALSVQLTSDFSYI 127
>gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 216
Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQ 265
+LN+ ++F +L+ K H + ++ G F Q WK+
Sbjct: 95 YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKR 137
>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
+ +I AK++++ L G+I L +D+SF G T +SFG
Sbjct: 288 SVAKIGIAKSDLYPSLSLNGSIALTHDNSF----------PGYNTHWSFG 327
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,146
Number of Sequences: 1233
Number of extensions: 12439
Number of successful extensions: 39
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 11
length of query: 472
length of database: 328,796
effective HSP length: 77
effective length of query: 395
effective length of database: 233,855
effective search space: 92372725
effective search space used: 92372725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)