HHsearch alignment for GI: 254781102 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=366.98 Aligned_cols=356 Identities=20% Similarity=0.236 Sum_probs=236.0
Q ss_pred CCCEEEEECCCCCCC--CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 598899984732233--343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r 66 QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 66 ~GA~~~i~~~~~~~~--~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
T Consensus 75 ~~~d~vV~SPGI~~~~p~l~~a~~~gi~vi--seiel~~~-~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~ 151 (476)
T PRK00141 75 DSYSIVVTSPGWRPDSPLLVDAQSAGLEVI--GDVELAWR-LDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFA 151 (476)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEE--EHHHHHHH-HHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 689999989978997999999998799577--19999998-611643367776388968996798999999999837997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22223454433235544576753122111111101122333335667666555431043212111232154554321101
Q gi|254781102|r 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 (497)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~ 223 (497)
T Consensus 152 ~~~~GNIG~p~~-------------~---~l--~~~~~~d~~VlElSSfQL~~--~~~~~p~iaVilNIs~DHLD~h~s~ 211 (476)
T PRK00141 152 AVAVGNIGIPVS-------------A---AL--VAQNRIDVLVAELSSFQLHW--APTFTPDAGVVLNLAEDHIDWHGSM 211 (476)
T ss_pred CEEEEECCCHHH-------------H---HH--HCCCCCCEEEEECCCCHHCC--CCCCCCCEEEEECCCHHHHHHHCCH
T ss_conf 289950672466-------------6---65--25787758999778201200--2236865898726887898662699
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--EEE
Q ss_conf 122345542100000012232111254200012221023565322222333322000000145444321122210--010
Q gi|254781102|r 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFD 301 (497)
Q Consensus 224 e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 301 (497)
T Consensus 212 e~Y~~aK~kI~~~-----~~~vi~~Dd~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 281 (476)
T PRK00141 212 RDYALDKARVLTA-----PVAVIGADDPYVVELTREADLSG--LIGFTLGEPAEGQVG---VRAGELVDNAFGDNVVLAS 281 (476)
T ss_pred HHHHHHHHHHHCC-----CCEEEECCCHHHHHHHHHCCCCC--EEEECCCCCCCCCEE---EECCEEEEEECCCCCEECC
T ss_conf 9999999987348-----82499778789999887447886--798527875535244---7768899851577503212
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHC
Q ss_conf -122343322211057788877520267676311123443345521000135578602300-037868999974121100
Q gi|254781102|r 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 (497)
Q Consensus 302 -~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~ 379 (497)
T Consensus 282 ~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~HR~E~v~~~-~gV~fiNDSKaTN~~at~~AL~~~~-- 358 (476)
T PRK00141 282 ADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAGHRGQVVAEH-DGVHFIDNSKATNPHAADSALAGHE-- 358 (476)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEECCCCCCCHHHHHHHHHHCC--
T ss_conf 4323776533599999999999984999999999998568988612799998-9999981798999899999997288--
Q ss_pred CCCCCCEEEECCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCC--EEEE------CCHHHHHH
Q ss_conf 2344403540266-5460046899999986198999908879898989999999834798--0997------89899999
Q gi|254781102|r 380 TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK------GNRIEAIR 450 (497)
Q Consensus 380 ~~~r~i~V~G~~G-drd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~--~~~~------~dr~eAi~ 450 (497)
T Consensus 359 ---~iilI~G--G~~Kg~d~~~l~~-~~~~~vk~v~l~-----G~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~av~ 427 (476)
T PRK00141 359 ---SVIWVAG--GQLKGADIDELIA-THGGRIKAALVL-----GADRAEIVAAVKEHAPDAPVTVTDKTDPEEAMREAVA 427 (476)
T ss_pred ---CCEEEEC--CCCCCCCHHHHHH-HHHHHCEEEEEE-----CCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
T ss_conf ---7399944--7657778799999-986331099997-----6898999999985478882688615457889999999
Q ss_pred HHHHHCCCCCEEEEECCCC
Q ss_conf 9999658988999944688
Q gi|254781102|r 451 TAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 451 ~A~~~a~~gDvili~GkG~ 469 (497)
T Consensus 428 ~a~~~a~~gd~VLL-SPac 445 (476)
T PRK00141 428 AAFSLAEPGDSVVL-APAA 445 (476)
T ss_pred HHHHHCCCCCEEEE-CCHH
T ss_conf 99973889898998-9454