HHsearch alignment for GI: 254781102 and conserved domain: PRK00421

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Probab=100.00  E-value=0  Score=462.00  Aligned_cols=362  Identities=25%  Similarity=0.363  Sum_probs=281.1

Q ss_pred             CCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf             59889998473223--3343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r   66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS  143 (497)
Q Consensus        66 ~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~  143 (497)
T Consensus        66 ~~~d~vV~Sp~I~~~~p~~~~a~~~gi~v~~~---~e~l~~~~---~---~~~~IaVtGTnGKTTtT~ll~~il~~~g~~  136 (459)
T PRK00421         66 KGADVVVVSSAIKPDNPELVAARELGIPVVRR---AEMLAELM---R---LRTSIAVAGTHGKTTTTSLLAHVLAEAGLD  136 (459)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEH---HHHHHHHH---H---CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             99999998998599899999999879979889---99999998---2---596499977888611899999999976998


Q ss_pred             C-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             2-222345443323554457675312211111110112233333566----76665554310432121112321545543
Q gi|254781102|r  144 S-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHID  218 (497)
Q Consensus       144 ~-~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEv----SS~gl~~~rl~~i~~diaviTNI~~dHLd  218 (497)
T Consensus       137 ~~~~iGg~--~~~~~~~~-----------------~~~~~~~~V~E~dE~d~sf~-------~~~P~iavitNI~~DHLD  190 (459)
T PRK00421        137 PTFIIGGI--LNAAGTNA-----------------RLGSSDYFVAEADESDRSFL-------KLHPDIAVVTNIDADHLD  190 (459)
T ss_pred             CEEEECCC--CCCCCCCC-----------------CCCCCCEEEEEECCCCCCHH-------HCCCCEEEEECCCHHHHH
T ss_conf             74885753--35566545-----------------25889889999535414364-------458989999179877865


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf             2110112234554210000001223211125420001222102356532222233-332200000014544432112221
Q gi|254781102|r  219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG  297 (497)
Q Consensus       219 ~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~  297 (497)
T Consensus       191 ~h~s~e~Y~~ak~~~~~~-~~~~g~~ViN~DD~~~~~l~~~~---~~~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~  266 (459)
T PRK00421        191 YYGDFEDLKDAFQEFAHN-LPFYGALVACGDDPELRELLPRV---DRPVITYGFSEDADFRAENIRQDGGGSHFDVLREG  266 (459)
T ss_pred             HCCCHHHHHHHHHHHHHC-CCCCCCEECCCCCHHHHHHHHHC---CCCCEEECCCCCCCEEEEEEEEECCCEEEEEEECC
T ss_conf             601899999999999971-99547211468798999987743---88600235687666678889994892389998389


Q ss_pred             CEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             001-0122343322211057788877520267676311123443345521000135578602300037868999974121
Q gi|254781102|r  298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI  376 (497)
Q Consensus       298 ~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l  376 (497)
T Consensus       267 ~~~~~~~l~l~G~HNv~NalAAia~a~~lGi~~e~i~~aL~~F~Gv~~R~E~v~~-~~gv~~idDYAH~P~~i~a~l~al  345 (459)
T PRK00421        267 EDLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIRKALATFKGVKRRFEEKGE-VNGVVLIDDYAHHPTEIKATLKAA  345 (459)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEECCCCHHHHHHHHHHH
T ss_conf             3788999568638899999999999998499999999999753574502799872-288479973568938999999999


Q ss_pred             HHCC-CCCCCEEEECCCCCCCCHHHHHHHHHH--HHCCEEEECCCCCCCCCH------HHHHHHHHH-CCCCEEEECCHH
Q ss_conf             1002-344403540266546004689999998--619899990887989898------999999983-479809978989
Q gi|254781102|r  377 RTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRI  446 (497)
Q Consensus       377 ~~~~-~~r~i~V~G~~Gdrd~~kr~~mg~~a~--~~ad~vi~t~d~~r~e~~------~~I~~~i~~-g~~~~~~~~dr~  446 (497)
T Consensus       346 r~~~~~~rii~vfqP--h~~sR~~~~~~e~a~~l~~aD~vil~~iy~a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~  423 (459)
T PRK00421        346 RQKYPDKRIVAVFQP--HRYSRTRDLFDEFAEVLSDADEVILLDIYAAGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVD  423 (459)
T ss_pred             HHHCCCCCEEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHH
T ss_conf             987689966999867--420548999999999987199999888758888765788999999999860898879969999


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             99999999658988999944688
Q gi|254781102|r  447 EAIRTAIEMLNKQDVLVVAGKGH  469 (497)
Q Consensus       447 eAi~~A~~~a~~gDvili~GkG~  469 (497)
T Consensus       424 ~ai~~~~~~a~~gDvVL~~GaGd  446 (459)
T PRK00421        424 DLAELLADVLQPGDLVLTMGAGD  446 (459)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCC
T ss_conf             99999998589989999979999