HHsearch alignment for GI: 254781102 and conserved domain: PRK00421
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=462.00 Aligned_cols=362 Identities=25% Similarity=0.363 Sum_probs=281.1
Q ss_pred CCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 59889998473223--3343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r 66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 66 ~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
T Consensus 66 ~~~d~vV~Sp~I~~~~p~~~~a~~~gi~v~~~---~e~l~~~~---~---~~~~IaVtGTnGKTTtT~ll~~il~~~g~~ 136 (459)
T PRK00421 66 KGADVVVVSSAIKPDNPELVAARELGIPVVRR---AEMLAELM---R---LRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 136 (459)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEH---HHHHHHHH---H---CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999998998599899999999879979889---99999998---2---596499977888611899999999976998
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2-222345443323554457675312211111110112233333566----76665554310432121112321545543
Q gi|254781102|r 144 S-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 (497)
Q Consensus 144 ~-~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEv----SS~gl~~~rl~~i~~diaviTNI~~dHLd 218 (497)
T Consensus 137 ~~~~iGg~--~~~~~~~~-----------------~~~~~~~~V~E~dE~d~sf~-------~~~P~iavitNI~~DHLD 190 (459)
T PRK00421 137 PTFIIGGI--LNAAGTNA-----------------RLGSSDYFVAEADESDRSFL-------KLHPDIAVVTNIDADHLD 190 (459)
T ss_pred CEEEECCC--CCCCCCCC-----------------CCCCCCEEEEEECCCCCCHH-------HCCCCEEEEECCCHHHHH
T ss_conf 74885753--35566545-----------------25889889999535414364-------458989999179877865
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 2110112234554210000001223211125420001222102356532222233-332200000014544432112221
Q gi|254781102|r 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297 (497)
Q Consensus 219 ~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~ 297 (497)
T Consensus 191 ~h~s~e~Y~~ak~~~~~~-~~~~g~~ViN~DD~~~~~l~~~~---~~~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~ 266 (459)
T PRK00421 191 YYGDFEDLKDAFQEFAHN-LPFYGALVACGDDPELRELLPRV---DRPVITYGFSEDADFRAENIRQDGGGSHFDVLREG 266 (459)
T ss_pred HCCCHHHHHHHHHHHHHC-CCCCCCEECCCCCHHHHHHHHHC---CCCCEEECCCCCCCEEEEEEEEECCCEEEEEEECC
T ss_conf 601899999999999971-99547211468798999987743---88600235687666678889994892389998389
Q ss_pred CEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 001-0122343322211057788877520267676311123443345521000135578602300037868999974121
Q gi|254781102|r 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 (497)
Q Consensus 298 ~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l 376 (497)
T Consensus 267 ~~~~~~~l~l~G~HNv~NalAAia~a~~lGi~~e~i~~aL~~F~Gv~~R~E~v~~-~~gv~~idDYAH~P~~i~a~l~al 345 (459)
T PRK00421 267 EDLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIRKALATFKGVKRRFEEKGE-VNGVVLIDDYAHHPTEIKATLKAA 345 (459)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 3788999568638899999999999998499999999999753574502799872-288479973568938999999999
Q ss_pred HHCC-CCCCCEEEECCCCCCCCHHHHHHHHHH--HHCCEEEECCCCCCCCCH------HHHHHHHHH-CCCCEEEECCHH
Q ss_conf 1002-344403540266546004689999998--619899990887989898------999999983-479809978989
Q gi|254781102|r 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRI 446 (497)
Q Consensus 377 ~~~~-~~r~i~V~G~~Gdrd~~kr~~mg~~a~--~~ad~vi~t~d~~r~e~~------~~I~~~i~~-g~~~~~~~~dr~ 446 (497)
T Consensus 346 r~~~~~~rii~vfqP--h~~sR~~~~~~e~a~~l~~aD~vil~~iy~a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~ 423 (459)
T PRK00421 346 RQKYPDKRIVAVFQP--HRYSRTRDLFDEFAEVLSDADEVILLDIYAAGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVD 423 (459)
T ss_pred HHHCCCCCEEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 987689966999867--420548999999999987199999888758888765788999999999860898879969999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99999999658988999944688
Q gi|254781102|r 447 EAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 447 eAi~~A~~~a~~gDvili~GkG~ 469 (497)
T Consensus 424 ~ai~~~~~~a~~gDvVL~~GaGd 446 (459)
T PRK00421 424 DLAELLADVLQPGDLVLTMGAGD 446 (459)
T ss_pred HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99999998589989999979999