HHsearch alignment for GI: 254781102 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=324.83 Aligned_cols=287 Identities=22% Similarity=0.317 Sum_probs=201.5
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 00224565430652000123333321023222223454433235544576753122111111101122333335667666
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~g 193 (497)
T Consensus 101 ~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG~------------p--~-----l~~~~--~~~~~VlElSSfQ 159 (418)
T PRK00683 101 RYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGNIGL------------P--I-----LDGMQ--QPGVRVVEISSFQ 159 (418)
T ss_pred CCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEECCCH------------H--H-----HHHHC--CCCCEEEEEEHHH
T ss_conf 798799976898660999999999867998188803465------------7--7-----76432--5894699831242
Q ss_pred HHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 55543104321--2111232154554321101122345542100000012232111254200012221023565322222
Q gi|254781102|r 194 LDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 (497)
Q Consensus 194 l~~~rl~~i~~--diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g 271 (497)
T Consensus 160 L~~~--~~~~p~~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~ 225 (418)
T PRK00683 160 LADQ--EESIPVLSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCL-RNPDDLWVGDERSLGNSYLEY-----------V 225 (418)
T ss_pred HHHH--HHCCCCCCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHC-CCCCCEEECCCCCCCHHHHHH-----------H
T ss_conf 3212--4307762212101578424122168999999999999846-797646852541101788887-----------7
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 33332200000014544432112221001012234332221105778887752-02676763111234433455210001
Q gi|254781102|r 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVG 350 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~-lGi~~~~i~~~L~~f~~~~gR~E~i~ 350 (497)
T Consensus 226 -~-------~~~--------~~~~~~----~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v~ 285 (418)
T PRK00683 226 -Q-------EIM--------RLLDKG----SALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYLG 285 (418)
T ss_pred -H-------HHH--------HHHCCC----CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf -7-------777--------774453----10165440329889999999998579999999999973488411136888
Q ss_pred CCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 35578602300-0378689999741211002344403540266-546004689999998619899990887989898999
Q gi|254781102|r 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 351 ~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~G-drd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
T Consensus 286 ~~-~Gv~fiNDSKaTN~~a~~~AL~s~~----~~iilI~G--G~~K~~d~~~L-~~~~~~~vk~v~~~-----G~~~~~i 352 (418)
T PRK00683 286 EK-DGVHYINDSKATTVSAVEKALLAVG----KDVIVILG--GRNKGGDFPSL-LPVLRQTAKHVVAM-----GECRQEI 352 (418)
T ss_pred EE-CCCEEECCCCCCCHHHHHHHHHHCC----CCCEEEEC--CCCCCCCHHHH-HHHHHHCCCEEEEE-----CCCHHHH
T ss_conf 81-7823763776789899999998567----88589975--78766786999-99986318499996-----8899999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 999983479809978989999999996589889999446886
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
T Consensus 353 ~~~l~~~~~-~~~~~~l~eAv~~a~~~a~~gd~VLL-SPaca 392 (418)
T PRK00683 353 AQALSEKFP-LTVVKDLQEAVSCAQEIAQPGDVILL-SPGCA 392 (418)
T ss_pred HHHHHCCCC-EEECCCHHHHHHHHHHHCCCCCEEEE-CCCCC
T ss_conf 998756998-79859899999999984789898998-97550