HHsearch alignment for GI: 254781102 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=377.03 Aligned_cols=319 Identities=20% Similarity=0.300 Sum_probs=230.8
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
T Consensus 101 ~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GNIG~------------p-~l~--------~~~~~d~~VlElSS 159 (450)
T PRK01368 101 SKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV------------P-ALQ--------AKASKDGYVLELSS 159 (450)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCH------------H-HHH--------CCCCCCEEEEEECC
T ss_conf 67997799968999748999999999975996289625563------------6-652--------52689759999356
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCC
Q ss_conf 6655543104321211123215455432110112234554210000001223211125420001222102-356532222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSV 270 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~-~~~~~~~~~ 270 (497)
T Consensus 160 fQl~~--~~~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~-~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~f 236 (450)
T PRK01368 160 FQLDL--VKTFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDR-MDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPF 236 (450)
T ss_pred CCHHC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 52203--63479878999468877987726878999999999965-8988889997874889999986300455169740
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 23333220000001454443211222-10010122343322211057788877520267676311123443345521000
Q gi|254781102|r 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
T Consensus 237 ~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V 314 (450)
T PRK01368 237 SVTKILEN--GISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYI 314 (450)
T ss_pred CCCCCCCC--CEEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEE
T ss_conf 34532447--7488547335520155330045211357565899999999999980997777787642467700146899
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
T Consensus 315 ~~~-~gv~~iNDSKaTN~~a~~~Al~~~~-----~i~lI~G-G~~K~~d~~~l-~~~~~~-v~~~~l~-----G~~~~~~ 380 (450)
T PRK01368 315 GSI-NNISFYNDSKATNAISAVQSIKALD-----NIYWLAG-GIPKEGGIEEI-KPYFSK-IKKAYFY-----GQAKEMF 380 (450)
T ss_pred EEE-CCEEEECCCCCCCHHHHHHHHHCCC-----CEEEEEE-CCCCCCCHHHH-HHHHHC-CCEEEEE-----CCCHHHH
T ss_conf 998-9999971788789999999985689-----7399994-15777887999-988743-8799998-----9789999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCE----EEEECCCCCCC
Q ss_conf 999983479809978989999999996589889----99944688663
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV----LVVAGKGHETV 472 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDv----ili~GkG~e~~ 472 (497)
T Consensus 381 ~~~-~~~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLl-SPacaSf 426 (450)
T PRK01368 381 ANT-AKNIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILL-APSCSSY 426 (450)
T ss_pred HHH-CCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCC
T ss_conf 986-058987696499999999999997557878997996-8602040