HHsearch alignment for GI: 254781102 and conserved domain: PRK01368

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=377.03  Aligned_cols=319  Identities=20%  Similarity=0.300  Sum_probs=230.8

Q ss_pred             CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r  112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS  191 (497)
Q Consensus       112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS  191 (497)
T Consensus       101 ~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GNIG~------------p-~l~--------~~~~~d~~VlElSS  159 (450)
T PRK01368        101 SKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV------------P-ALQ--------AKASKDGYVLELSS  159 (450)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCH------------H-HHH--------CCCCCCEEEEEECC
T ss_conf             67997799968999748999999999975996289625563------------6-652--------52689759999356


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCC
Q ss_conf             6655543104321211123215455432110112234554210000001223211125420001222102-356532222
Q gi|254781102|r  192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSV  270 (497)
Q Consensus       192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~-~~~~~~~~~  270 (497)
T Consensus       160 fQl~~--~~~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~-~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~f  236 (450)
T PRK01368        160 FQLDL--VKTFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDR-MDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPF  236 (450)
T ss_pred             CCHHC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf             52203--63479878999468877987726878999999999965-8988889997874889999986300455169740


Q ss_pred             CCCCCCCCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             23333220000001454443211222-10010122343322211057788877520267676311123443345521000
Q gi|254781102|r  271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV  349 (497)
Q Consensus       271 g~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i  349 (497)
T Consensus       237 ~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V  314 (450)
T PRK01368        237 SVTKILEN--GISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYI  314 (450)
T ss_pred             CCCCCCCC--CEEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEE
T ss_conf             34532447--7488547335520155330045211357565899999999999980997777787642467700146899


Q ss_pred             CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf             135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r  350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI  428 (497)
Q Consensus       350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I  428 (497)
T Consensus       315 ~~~-~gv~~iNDSKaTN~~a~~~Al~~~~-----~i~lI~G-G~~K~~d~~~l-~~~~~~-v~~~~l~-----G~~~~~~  380 (450)
T PRK01368        315 GSI-NNISFYNDSKATNAISAVQSIKALD-----NIYWLAG-GIPKEGGIEEI-KPYFSK-IKKAYFY-----GQAKEMF  380 (450)
T ss_pred             EEE-CCEEEECCCCCCCHHHHHHHHHCCC-----CEEEEEE-CCCCCCCHHHH-HHHHHC-CCEEEEE-----CCCHHHH
T ss_conf             998-9999971788789999999985689-----7399994-15777887999-988743-8799998-----9789999


Q ss_pred             HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCE----EEEECCCCCCC
Q ss_conf             999983479809978989999999996589889----99944688663
Q gi|254781102|r  429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV----LVVAGKGHETV  472 (497)
Q Consensus       429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDv----ili~GkG~e~~  472 (497)
T Consensus       381 ~~~-~~~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLl-SPacaSf  426 (450)
T PRK01368        381 ANT-AKNIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILL-APSCSSY  426 (450)
T ss_pred             HHH-CCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCC
T ss_conf             986-058987696499999999999997557878997996-8602040