HHsearch alignment for GI: 254781102 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=372.43 Aligned_cols=320 Identities=20% Similarity=0.267 Sum_probs=227.3
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
T Consensus 120 ~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GNIG~p~-------------l~~---~--~~~~~~d~~V~ElSSf 181 (481)
T PRK01438 120 TPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGNIGVPV-------------LDA---V--RGPDGYDVLAVELSSF 181 (481)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHH-------------HHH---H--CCCCCCCEEEEECCCC
T ss_conf 888789993899746099999999996699707996256777-------------764---2--2888860899980476
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCC
Q ss_conf 6555431043212111232154554321101122345542100000012232111254200012221023-565322222
Q gi|254781102|r 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVG 271 (497)
Q Consensus 193 gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~-~~~~~~~~g 271 (497)
T Consensus 182 qL~~--~~~~~p~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~---~~~~v~n~dD~~~~~l~~~~~~~~~~~~i~f~ 256 (481)
T PRK01438 182 QLHW--APSVRPHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGN---TVACVYNVADPATEDLVREADVVEGARAIGFT 256 (481)
T ss_pred CCCC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEEEECCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 5133--445576489970687778665235989999999986278---51499705778899999860224477078873
Q ss_pred CCCC---CCCCCEECCCCCCCCCCCCC-CC-CEEE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3333---22000000145444321122-21-0010-12234332221105778887752026767631112344334552
Q gi|254781102|r 272 YQGK---FIHLKKVCAIHNKQQVTISV-EG-KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 272 ~~~~---~~~~~~~~~~~~~~~~~i~~-~~-~~~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR 345 (497)
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~aL~~F~Gl~hR 335 (481)
T PRK01438 257 LGTPGPSDLGIVDGILV-DRAFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDGLRAFRPDAHR 335 (481)
T ss_pred CCCCCCCCCCEECCEEE-ECEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCE
T ss_conf 58887120121034553-02034302345300010664067657699999999999998299889999888634897733
Q ss_pred HCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 1000135578602300-037868999974121100234440354026654600468999999861989999088798989
Q gi|254781102|r 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 (497)
Q Consensus 346 ~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~ 424 (497)
T Consensus 336 ~E~v~~~-~GV~fiNDSKaTN~~A~~~AL~~~~-----~i~lI~G-G~~Kg~d~~~l~-~~~~~~vk~~~l~-----G~~ 402 (481)
T PRK01438 336 IEHVADA-DGVTYVDDSKATNPHAAEASLAAYP-----SVVWIAG-GLAKGAHFDDLV-RAHAARLRGVVLI-----GAD 402 (481)
T ss_pred EEEEEEE-CCEEEECCCCCCCHHHHHHHHHHCC-----CEEEEEC-CCCCCCCHHHHH-HHHHHHCEEEEEE-----CCC
T ss_conf 7899999-9999980688789889999987249-----8899937-865788989999-9986013399997-----789
Q ss_pred HHHHHHHHHHCCCCE--EEE-----CCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 899999998347980--997-----8989999999996589889999446886
Q gi|254781102|r 425 PEKIRAEIIHGIPGF--IEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 425 ~~~I~~~i~~g~~~~--~~~-----~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
T Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLl-SPaca 454 (481)
T PRK01438 403 RALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLL-APACA 454 (481)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE-CCHHH
T ss_conf 99999999722898745773102378999999999963899898998-95000