HHsearch alignment for GI: 254781102 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=382.05 Aligned_cols=369 Identities=21% Similarity=0.273 Sum_probs=245.9
Q ss_pred CCCEEEEECCCCCCC------CCCCCCCCCCCEEEECCHHHHHHHHHHHHH-CCCCCCEEEEEEEECCCEEHHHHHHHHH
Q ss_conf 598899984732233------343223479709997998999999999982-7620022456543065200012333332
Q gi|254781102|r 66 QGAEAIVVSSAYSLQ------DFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 66 ~GA~~~i~~~~~~~~------~~~~~~~~~~p~i~V~d~~~aL~~la~~~~-~~~~~~vIgITGTnGKTTt~~~l~~iL~ 138 (497)
T Consensus 68 ~~~d~vV~SPGI~p~~p~~~~~l~~A~~~gi~i~--~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~ 145 (501)
T PRK02006 68 DGVELVALSPGLSPLEPALAALLAAARERGIPVW--GELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCE 145 (501)
T ss_pred CCCCEEEECCEECCCCCCHHHHHHHHHHCCCCEE--EHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 6899999899008888543199999998799587--68999998876302223568748999389966879999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 10232222234544332355445767531221111111011--2233333566766655543104321211123215455
Q gi|254781102|r 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 (497)
Q Consensus 139 ~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~--~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dH 216 (497)
T Consensus 146 ~~g~~~~~~GNIG~p~-------------l~---~l~~~~~~~~~~d~~VlElSSfQLe~--~~~~~p~vaVilNIs~DH 207 (501)
T PRK02006 146 RAGKKVAVAGNISPAA-------------LD---KLAEAIDAAALPDVWVLELSSFQLET--THTFAPDAATVLNITQDH 207 (501)
T ss_pred HCCCCEEEECCCCCHH-------------HH---HHHHHHCCCCCCCEEEEEECHHHHCC--CCCCCCCEEEEECCCHHH
T ss_conf 7699746525646102-------------67---78764225776868999966467575--655796789990788656
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC----CCCCEE------CCCC
Q ss_conf 432110112234554210000001223211125420001222102356532222233332----200000------0145
Q gi|254781102|r 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKV------CAIH 286 (497)
Q Consensus 217 Ld~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~----~~~~~~------~~~~ 286 (497)
T Consensus 208 LD~h~s~e~Y~~aK~rif~----~~~~~V~n~DD~~~~~~~~~~~~~-~~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~ 282 (501)
T PRK02006 208 LDWHGSMAAYAAAKGRIFG----PATVRVLNRDDALVMAMAPPAAAA-DAPVTFGLDEPAQDGDYGLLRENGMAWLVEAE 282 (501)
T ss_pred HHHHCCHHHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHCCCC-CEEEEECCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 4442379999999998723----485599948888899876650566-41688505775666540256237705787303
Q ss_pred C--C--CCCCCC--------CC----CCEEE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4--4--432112--------22----10010-122343322211057788877520267676311123443345521000
Q gi|254781102|r 287 N--K--QQVTIS--------VE----GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 287 ~--~--~~~~i~--------~~----~~~~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~l~G~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V 362 (501)
T PRK02006 283 DRDAADEPAPTRRRKKDAAPPPDIALKRLMPADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVI 362 (501)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEE
T ss_conf 22100000012210233344433101103552010356720699999999999985998789876631557876525899
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
T Consensus 363 ~~~-~gv~~iNDSKaTN~~at~~Al~s~----~~~iilI~G-G~~K~~d~~~L-~~~~~~~~k~vil~-----G~~~~~i 430 (501)
T PRK02006 363 ATI-DDVDYVDDSKGTNVGATVAALDGL----AQRVVLIAG-GDGKGQDFSPL-AAPVARWARAVVLI-----GRDAPAI 430 (501)
T ss_pred EEE-CCEEEECCCCCCCHHHHHHHHHHC----CCCEEEEEE-CCCCCCCHHHH-HHHHHHHCEEEEEE-----CCCHHHH
T ss_conf 996-788997378778989999999707----897499980-57777797999-99998537099998-----9899999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99998347980997898999999999658988999944688663
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
T Consensus 431 ~~~l~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPacaSf 473 (501)
T PRK02006 431 RAALADTGVPLVDAATLEEAVRAAAELAQPGDAVLL-SPACASL 473 (501)
T ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 999751798079859999999999975789798998-9611030