HHsearch alignment for GI: 254781102 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=383.52 Aligned_cols=308 Identities=21% Similarity=0.300 Sum_probs=228.9
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
T Consensus 110 ~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GNiG~------------p~~-~~---~~~--~~~~d~~VlE~SSf 171 (450)
T PRK02472 110 SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLAGNIGY------------PAS-EV---AQK--ATADDTLVTELSSF 171 (450)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC------------CCH-HH---HHC--CCCCCEEEEEECCC
T ss_conf 1597899827999731999999999974997399941676------------412-45---544--78987799990655
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 65554310432121112321545543211011223455421000000122321112542000122210235653222223
Q gi|254781102|r 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 (497)
Q Consensus 193 gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~ 272 (497)
T Consensus 172 ql~~--~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~-~~~~~~v~n~Dd~~~~~l~~~~---~~~~i~fs~ 245 (450)
T PRK02472 172 QLMG--VETFRPHIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQ-TEDDYLVLNADQEEVKELAKQT---KATVVPFST 245 (450)
T ss_pred CHHH--HCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHC---CCEEEEECC
T ss_conf 1410--022588689993688779766348999999999999559-9687799958879999999757---970898536
Q ss_pred CCCC--CCCCEECCCCCCCCCCCCCCCCE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3332--20000001454443211222100-1-012234332221105778887752026767631112344334552100
Q gi|254781102|r 273 QGKF--IHLKKVCAIHNKQQVTISVEGKD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
T Consensus 246 ~~~~~~~~~~~-----~--~--~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~i~~aL~~F~Gl~hRlE~ 316 (450)
T PRK02472 246 TKEVDGAYIKD-----G--A--LYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEAIAEVLSTFTGVKHRLQY 316 (450)
T ss_pred CCCCCCCEEEC-----C--E--EEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 75466517627-----8--7--9988845664232367755349999999999998299878999998744884337999
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
Q ss_conf 0135578602300-037868999974121100234440354026654600468999999861989999088798989899
Q gi|254781102|r 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 (497)
Q Consensus 349 i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~ 427 (497)
T Consensus 317 v~~~-~Gv~~iNDSKaTN~~at~~Al~~~~----~~iilI~G-G~~Kg~d~~~-l~~~~-~~vk~v~~~-----G~~~~~ 383 (450)
T PRK02472 317 VGTI-NGRKFYNDSKATNILATQKALSGFN----QPVILLAG-GLDRGNEFDE-LIPYL-KNVKAMVVF-----GETAPK 383 (450)
T ss_pred EEEE-CCEEEEECCCCCCHHHHHHHHHCCC----CCEEEEEE-CCCCCCCHHH-HHHHH-HCCCEEEEE-----CCCHHH
T ss_conf 9997-4778982688889999999984589----98799991-5556888799-99997-376899996-----889999
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999998347980997898999999999658988999944
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
T Consensus 384 i~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLlSP 422 (450)
T PRK02472 384 LARAANKAGITIVEADNVEDAVPKAYALSEPGDVILLSP 422 (450)
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999997379718987999999999998588959899797