HHsearch alignment for GI: 254781102 and conserved domain: PRK02705
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=385.02 Aligned_cols=379 Identities=19% Similarity=0.241 Sum_probs=251.2
Q ss_pred HCCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCC
Q ss_conf 859889998473223--334322347970999799899999999998276200224565430652000123333321023
Q gi|254781102|r 65 AQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 65 ~~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~ 142 (497)
T Consensus 66 ~~~~d~vV~SPGI~~~~p~~~~a~~~gi~i~--~eiel~~-------~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 136 (459)
T PRK02705 66 LDQPDLVVVSPGIPWDHPTLVELREKGIEVI--GEMELAW-------RALKHIPWVGITGTNGKTTVTHLLAHILQAAGL 136 (459)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHHHHHH-------HHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 1678889989964998999999998799721--4999999-------985049757771789727899999999998399
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 22222345443323554457675312211111110112233333566766655543104321211123215455432110
Q gi|254781102|r 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 (497)
Q Consensus 143 ~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs 222 (497)
T Consensus 137 ~~~~~GNIG~p~~~~~-----------l~---~~~~~~~~d~~VlE~SSfQLe~--~~~~~p~iavitNI~~DHLD~h~s 200 (459)
T PRK02705 137 NAPMCGNIGYAACELA-----------LL---RSGKAEKPDWIVAELSSYQIES--SPELAPKIGIWTTFTPDHLERHGT 200 (459)
T ss_pred CCEEECCCCCCHHHHH-----------HH---CCCCCCCCCEEEEECCHHHHCC--CCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 8536401376204444-----------21---3467887657999757133133--667787789996688778766421
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 11223455421000000122321112542000122210235653222223333220000001454443211222100101
Q gi|254781102|r 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 (497)
Q Consensus 223 ~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 302 (497)
T Consensus 201 ~e~Y~~aK~~i~~~----~~~~V~N~DD~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 272 (459)
T PRK02705 201 LENYFAIKASLLER----SEIRILNGDDPYLRQGRSSWPKG-YW-VSTQGKKSLLDQADFWIDQ--EGWVVERGEPLFPL 272 (459)
T ss_pred HHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHCCCC-EE-EECCCCCCCCCCCCEEECC--CCEEEECCEEEEEH
T ss_conf 77899999975065----98899938879999987643774-79-9655641121114448826--98799778056540
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC
Q ss_conf -22343322211057788877520267676311123443345521000135578602300-0378689999741211002
Q gi|254781102|r 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 (497)
Q Consensus 303 -~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~ 380 (497)
T Consensus 273 ~~l~l~G~HN~~NalAAia~a~~lGi~~e~I~~aL~~F~GlpHRlE~V~~~-~gV~fiNDSKaTN~~a~~~Al~~~~--- 348 (459)
T PRK02705 273 EALKMPGAHNLQNLLLAVAAARLAGLSAEAIAKALRSFPGVPHRLERIGTI-NGIDFINDSKATNYDAAEVGLKAVP--- 348 (459)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEC-CCEEEECCCCCCCHHHHHHHHHHCC---
T ss_conf 421687676899999999999985886366788875089999853898742-8878972787889899999998289---
Q ss_pred CCCCCEEEECCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH-CCC-CEEEECCHHHHHHHHHHHCC
Q ss_conf 344403540266-546004689999998619899990887989898999999983-479-80997898999999999658
Q gi|254781102|r 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIP-GFIEKGNRIEAIRTAIEMLN 457 (497)
Q Consensus 381 ~~r~i~V~G~~G-drd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~-g~~-~~~~~~dr~eAi~~A~~~a~ 457 (497)
T Consensus 349 -~~iilI~G--G~~K~~d~~~l~-~~~~~~v~~v~~~-----G~~~~~i~~~l~~~~~~~~~~~~~~l~~Av~~a~~~a~ 419 (459)
T PRK02705 349 -GPIILIAG--GEAKQGDDSAWL-KQIKAKAAAVLLF-----GEAAPELAQLLQESGYTGEIEIVETLDEAVNRAFELAK 419 (459)
T ss_pred -CCEEEEEC--CCCCCCCHHHHH-HHHHHCCEEEEEE-----CCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHH
T ss_conf -98699956--766678739999-9986406199998-----98999999999736998776985999999999999876
Q ss_pred CCCE-EEEECCCCCCCEEECCCEECCCCHHH-----HHHHHHH
Q ss_conf 9889-99944688663584497886799899-----9999844
Q gi|254781102|r 458 KQDV-LVVAGKGHETVHIVTNGEKKMSVDCD-----IIREILG 494 (497)
Q Consensus 458 ~gDv-ili~GkG~e~~~~~~~~~~~~~~d~~-----~~~~~l~ 494 (497)
T Consensus 420 ~~~~~~VLlSPacaSfD~f~n-----yeeRG~~F~~~V~~l~~ 457 (459)
T PRK02705 420 ELQAKSVLLSPACASFDQYQN-----FEERGDHFRQLIQELLK 457 (459)
T ss_pred CCCCCEEEECCCCCCCCCCCC-----HHHHHHHHHHHHHHHHC
T ss_conf 589998996874401013279-----99999999999999861