HHsearch alignment for GI: 254781102 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=385.94 Aligned_cols=356 Identities=21% Similarity=0.269 Sum_probs=231.8
Q ss_pred CCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 59889998473223--3343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r 66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 66 ~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
T Consensus 69 ~~~d~vV~SPGI~~~~p~l~~a~~~gi~i~--~eieL~~~~~~~~~~-~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~ 145 (487)
T PRK03369 69 ADYALVVTSPGFPPTAPVLAAAAAAGVPIW--GDVELAWRLDAAGCY-GPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRR 145 (487)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEE--EHHHHHHHHHHCCCC-CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 677889989957998999999998899076--599999998744433-67665599979887278999999999858998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22223454433235544576753122111111101122333335667666555431043212111232154554321101
Q gi|254781102|r 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 (497)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~ 223 (497)
T Consensus 146 ~~~~GNiG~------------p~-------~-~~~~~~~~~~V~ElSSfql~~--~~~~~p~iaVitNI~~DHLD~h~s~ 203 (487)
T PRK03369 146 SVLCGNIGS------------PV-------L-DVLDEPAELLAVELSSFQLHW--APSLRPEAGAVLNIAEDHLDWHGTM 203 (487)
T ss_pred EEEEECCCH------------HH-------H-HHCCCCCCEEEEEECCCCCCC--CCCCCCCEEEECCCCHHHHHHCCCH
T ss_conf 599813665------------76-------6-412478858999813654344--6666854788527887787542899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCC--CCCCCCEE
Q ss_conf 1223455421000000122321112542000122210235653222223333-22000000145444321--12221001
Q gi|254781102|r 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT--ISVEGKDF 300 (497)
Q Consensus 224 e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--i~~~~~~~ 300 (497)
T Consensus 204 e~Y~~aK~ri~~-----~~~~v~n~DD~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 272 (487)
T PRK03369 204 AAYAAAKARALT-----GRVAVAGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR------DGHLVDRAFADDLTLA 272 (487)
T ss_pred HHHHHHHHHHHC-----CCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEE------CCEEEEEECCCCCEEE
T ss_conf 999999755733-----98799968768899997427876799653278764421265------3689984136773672
Q ss_pred EC-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 01-22343322211057788877520267676311123443345521000135578602300-03786899997412110
Q gi|254781102|r 301 DF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378 (497)
Q Consensus 301 ~~-~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~ 378 (497)
T Consensus 273 ~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~~aL~~F~glphR~E~v~~~-~Gv~fiNDSKaTn~~a~~~Al~s~~- 350 (487)
T PRK03369 273 PVDSIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVA-DGITYVDDSKATNPHAARASILAYP- 350 (487)
T ss_pred EHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEEECCCCCCHHHHHHHHHHCC-
T ss_conf 46645886353699899999999984999999999998579999852899999-9999982576689889999986155-
Q ss_pred CCCCCCCEEEECCCCCCCCHHHH--------------------HHHHHHHHCC-----EEEECCCCCCCCCHHHHHHHHH
Q ss_conf 02344403540266546004689--------------------9999986198-----9999088798989899999998
Q gi|254781102|r 379 ITSGRIIVVFGCGGDRDQGKRPI--------------------MGKIALDLAD-----IAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 379 ~~~~r~i~V~G~~Gdrd~~kr~~--------------------mg~~a~~~ad-----~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
T Consensus 351 ----~iilI~G-G~~Kg~~~~~L~~~~~~~v~~v~l~G~d~~~i~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 425 (487)
T PRK03369 351 ----RVVWIAG-GLLKGASVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVEVVTGEDAGMPATPEACVLDVT 425 (487)
T ss_pred ----CEEEECC-CCCCCCCHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf ----5089615-54367770778999975425999978888999999974277665213311322221001345443333
Q ss_pred HCCCC--EEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 34798--09978989999999996589889999
Q gi|254781102|r 434 HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 434 ~g~~~--~~~~~dr~eAi~~A~~~a~~gDvili 464 (497)
T Consensus 426 ~~~~~~~~~~~~~l~~AV~~A~~~a~~GdvVLL 458 (487)
T PRK03369 426 KVDDAGGTLGDAVMTAAVAAARGLARPGDTVLL 458 (487)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 210011203577999999999974899998997