HHsearch alignment for GI: 254781102 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=368.57 Aligned_cols=306 Identities=25% Similarity=0.344 Sum_probs=221.4
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
T Consensus 102 ~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGNiG~------------p-~~~-------~~~~~~d~~VlElSS 161 (438)
T PRK03806 102 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL------------P-ALM-------LLDQDCELYVLELSS 161 (438)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC------------C-HHH-------HHCCCCCEEEEECCC
T ss_conf 27998899948998489999999999865997567715775------------2-777-------513767579983245
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 665554310432121112321545543211-0112234554210000001223211125420001222102356532222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~ 270 (497)
T Consensus 162 fQLe~--~~~~~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~----~~~~v~n~dD~~~~~~~----~~~~~~i~f 231 (438)
T PRK03806 162 FQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVVNADDALTMPVR----GADERCVSF 231 (438)
T ss_pred CCCCC--CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEECCCCHHHHHHH----HCCCCEEEE
T ss_conf 33002--354576378863588878877654599999999988627----96899947518779864----035655898
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCE-EE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23333220000001454443211222100-10-12234332221105778887752026767631112344334552100
Q gi|254781102|r 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD-FD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
T Consensus 232 g~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~ 306 (438)
T PRK03806 232 GVNMGDYHLNR----QQGET-WLRVKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQL 306 (438)
T ss_pred ECCCCCEEEEE----CCCCE-EEEECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 23566436760----57736-89737803540121266672049889999999998399989986552047999973389
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
Q ss_conf 0135578602300-037868999974121100234440354026654600468999999861989999088798989899
Q gi|254781102|r 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 (497)
Q Consensus 349 i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~ 427 (497)
T Consensus 307 v~~~-~gv~fiNDSKaTN~~a~~~Al~s~~--~~~~i~lI~G-G~~K~~d~~~l-~~~~~~~~~~~~~~-----G~~~~~ 376 (438)
T PRK03806 307 VLEH-NGVRWINDSKATNVGSTEAALNGLH--VDGTLHLLLG-GDGKSADFSPL-ARYLNGDNIRLYCF-----GRDGAQ 376 (438)
T ss_pred EEEE-CCEEEEECCCCCCHHHHHHHHHHCC--CCCCEEEEEC-CCCCCCCHHHH-HHHHHCCCEEEEEE-----CCCHHH
T ss_conf 9997-9999998972158999999998262--0397799954-77555787999-99861265699997-----778899
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999834798099789899999999965898899994
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~ 465 (497)
T Consensus 377 ~~~-~~~~~--~~~~~~l~~Av~~a~~~a~~gd~VLlS 411 (438)
T PRK03806 377 LAA-LRPEV--AQLTETMEQAMRLLAPRVQPGDMVLLS 411 (438)
T ss_pred HHH-HCCCC--CHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 996-41220--415400999999999866899989989