HHsearch alignment for GI: 254781102 and conserved domain: PRK03815

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=1.2e-43  Score=302.68  Aligned_cols=292  Identities=16%  Similarity=0.179  Sum_probs=193.6

Q ss_pred             CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r  115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL  194 (497)
Q Consensus       115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl  194 (497)
T Consensus        89 ~~~I~ITGTNGKsTtt~li~~iL~~~g--~~~~GNIG~------------P--l------~~~-~~~~~~~VlElSSfQL  145 (401)
T PRK03815         89 PFSIWISGTNGKTTTTQMLTHLLEDFG--AVSGGNIGT------------P--L------AEL-DPNAKIWVLETSSFTL  145 (401)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCC--CCEECCCCH------------H--H------HHC-CCCCCEEEEEECHHHC
T ss_conf             874899847777899999999998669--813041664------------3--8------862-8778879999344540


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             55431043212111232154554321101122345542100000012232111254200012221023565322222333
Q gi|254781102|r  195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG  274 (497)
Q Consensus       195 ~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~  274 (497)
T Consensus       146 e~--~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~-~~~~~~~i~~~~~~~~--------~~~~~~i~~~~~~  214 (401)
T PRK03815        146 HY--TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKL-MNEGSVAILPKKYKET--------PTKAQKISYEDEE  214 (401)
T ss_pred             CC--CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHH-CCCCCEEEECHHHCCC--------CCCCEEEEECCHH
T ss_conf             66--75668768988368820523626899999999999962-8877679972233047--------6661799726627


Q ss_pred             CCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             32200000014544432112221001012234332221105778887752026767631112344334552100013557
Q gi|254781102|r  275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR  354 (497)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~  354 (497)
T Consensus       215 ~~~--~---------~~~--i~~----~~i~~~~~~~~~~-~~a~~~~--~~~~~~~~~~~l~~F~gl~HRlE~v~~~-~  273 (401)
T PRK03815        215 DLA--E---------KFG--IDT----EKINFKGPFLLDA-LLALAVE--KILFDENDYERLNAFVIEAHKLEEFRDK-Q  273 (401)
T ss_pred             HHH--H---------HCC--CCH----HHCCCCHHHHHHH-HHHHHHH--HCCCCHHHHHHHHHCCCCCCCEEEEEEE-C
T ss_conf             778--7---------658--877----8705645899999-9999998--5566355899998489988853899984-8


Q ss_pred             CCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             8602300-037868999974121100234440354026654600468999999861989999088798989899999998
Q gi|254781102|r  355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII  433 (497)
Q Consensus       355 ~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~  433 (497)
T Consensus       274 gv~fiNDSKATN~~At~~Al~~~---~~~~iilI~G-G~~Kg~d~~~L~-~~i~~~~~~v~~~-----G~~~~~i~~~~~  343 (401)
T PRK03815        274 GRLWVDDSKATNIDATIQALKRY---KDKKIHLILG-GDDKGVDLTPLF-EELKNFDIEIYAI-----GSNAEKILALAK  343 (401)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHC---CCCCEEEEEC-CCCCCCCHHHHH-HHHHHHCEEEEEE-----CCCHHHHHHHHH
T ss_conf             98996688789889999999837---6786799963-765567879999-9976405699998-----789999999987


Q ss_pred             HCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             347980997898999999999658988999944688663
Q gi|254781102|r  434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV  472 (497)
Q Consensus       434 ~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~  472 (497)
T Consensus       344 ~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLL-SPacASf  381 (401)
T PRK03815        344 EFNIKAQKCEFLEKAVNEIKKVLKQNEVALL-SPAAASL  381 (401)
T ss_pred             HCCCCEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf             5698469828699999999985789798998-9744030