HHsearch alignment for GI: 254781102 and conserved domain: PRK03815
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=1.2e-43 Score=302.68 Aligned_cols=292 Identities=16% Similarity=0.179 Sum_probs=193.6
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
T Consensus 89 ~~~I~ITGTNGKsTtt~li~~iL~~~g--~~~~GNIG~------------P--l------~~~-~~~~~~~VlElSSfQL 145 (401)
T PRK03815 89 PFSIWISGTNGKTTTTQMLTHLLEDFG--AVSGGNIGT------------P--L------AEL-DPNAKIWVLETSSFTL 145 (401)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCC--CCEECCCCH------------H--H------HHC-CCCCCEEEEEECHHHC
T ss_conf 874899847777899999999998669--813041664------------3--8------862-8778879999344540
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55431043212111232154554321101122345542100000012232111254200012221023565322222333
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~ 274 (497)
T Consensus 146 e~--~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~-~~~~~~~i~~~~~~~~--------~~~~~~i~~~~~~ 214 (401)
T PRK03815 146 HY--TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKL-MNEGSVAILPKKYKET--------PTKAQKISYEDEE 214 (401)
T ss_pred CC--CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHH-CCCCCEEEECHHHCCC--------CCCCEEEEECCHH
T ss_conf 66--75668768988368820523626899999999999962-8877679972233047--------6661799726627
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32200000014544432112221001012234332221105778887752026767631112344334552100013557
Q gi|254781102|r 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 (497)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~ 354 (497)
T Consensus 215 ~~~--~---------~~~--i~~----~~i~~~~~~~~~~-~~a~~~~--~~~~~~~~~~~l~~F~gl~HRlE~v~~~-~ 273 (401)
T PRK03815 215 DLA--E---------KFG--IDT----EKINFKGPFLLDA-LLALAVE--KILFDENDYERLNAFVIEAHKLEEFRDK-Q 273 (401)
T ss_pred HHH--H---------HCC--CCH----HHCCCCHHHHHHH-HHHHHHH--HCCCCHHHHHHHHHCCCCCCCEEEEEEE-C
T ss_conf 778--7---------658--877----8705645899999-9999998--5566355899998489988853899984-8
Q ss_pred CCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 8602300-037868999974121100234440354026654600468999999861989999088798989899999998
Q gi|254781102|r 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 355 ~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
T Consensus 274 gv~fiNDSKATN~~At~~Al~~~---~~~~iilI~G-G~~Kg~d~~~L~-~~i~~~~~~v~~~-----G~~~~~i~~~~~ 343 (401)
T PRK03815 274 GRLWVDDSKATNIDATIQALKRY---KDKKIHLILG-GDDKGVDLTPLF-EELKNFDIEIYAI-----GSNAEKILALAK 343 (401)
T ss_pred CEEEECCCCCCCHHHHHHHHHHC---CCCCEEEEEC-CCCCCCCHHHHH-HHHHHHCEEEEEE-----CCCHHHHHHHHH
T ss_conf 98996688789889999999837---6786799963-765567879999-9976405699998-----789999999987
Q ss_pred HCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 347980997898999999999658988999944688663
Q gi|254781102|r 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 434 ~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
T Consensus 344 ~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLL-SPacASf 381 (401)
T PRK03815 344 EFNIKAQKCEFLEKAVNEIKKVLKQNEVALL-SPAAASL 381 (401)
T ss_pred HCCCCEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 5698469828699999999985789798998-9744030