HHsearch alignment for GI: 254781102 and conserved domain: PRK04308

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=380.92  Aligned_cols=359  Identities=20%  Similarity=0.338  Sum_probs=246.7

Q ss_pred             HHHHHCCCEEEEECCCCCCC--CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHH
Q ss_conf             99998598899984732233--3432234797099979989999999999827620022456543065200012333332
Q gi|254781102|r   61 PQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ  138 (497)
Q Consensus        61 ~~A~~~GA~~~i~~~~~~~~--~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~  138 (497)
T Consensus        61 ~~~~~~~~d~vV~SPgI~~~~p~l~~a~~~gi~i~--~~~-----el~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~  133 (445)
T PRK04308         61 KDALDNGFDILALSPGISERQPDIEAFKQNGGRVL--GDI-----ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCI  133 (445)
T ss_pred             HHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHH-----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             36501599999989953899999999997599571--599-----99999984169957999489983779999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             10232222234544332355445767531221111111011223333356676665554310432121112321545543
Q gi|254781102|r  139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID  218 (497)
Q Consensus       139 ~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd  218 (497)
T Consensus       134 ~~g~~~~~~GNiG~p~~-------------~~--~~~-~~~~~~d~~VlElSSfql~~--~~~~~p~iavitNi~~DHLD  195 (445)
T PRK04308        134 KCGLDTVIAGNIGTPVL-------------EA--ELQ-REGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLD  195 (445)
T ss_pred             HCCCCEEEEEECCCCCH-------------HH--HHH-HCCCCCCEEEEEEECCCCCC--CCCCCCCEEEECCCCHHHHH
T ss_conf             75996299850375211-------------11--444-32787867999960334466--55437638998589856754


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCC
Q ss_conf             21101122345542100000012232111254200012221023565322222333-32200000014544432112221
Q gi|254781102|r  219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEG  297 (497)
Q Consensus       219 ~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~i~~~~  297 (497)
T Consensus       196 ~h~s~e~Y~~aK~~if~----~~~~~vln~dd~~~~~~~~~----~~~v~~~~~~~~~d~~~~~-----~~~--~~~~~~  260 (445)
T PRK04308        196 RYDDLLDYAHTKAKIFR----GDGVQVLNADDAFCRAMKRA----GREVKWFSLEHEADFWLER-----ETG--RLKQGN  260 (445)
T ss_pred             HHCCHHHHHHHHHHHCC----CCCEEEECCCCHHHHHHHHC----CCCEEEEECCCCCCEEEEC-----CCC--EEEECC
T ss_conf             53599999999997445----79779993871999999866----9956998137656368961-----663--797468


Q ss_pred             CE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHH
Q ss_conf             00-1-0122343322211057788877520267676311123443345521000135578602300-0378689999741
Q gi|254781102|r  298 KD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK  374 (497)
Q Consensus       298 ~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~  374 (497)
T Consensus       261 ~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v~~~-~GV~~iNDSKaTn~~at~~Al~  339 (445)
T PRK04308        261 EDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIA  339 (445)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEEECCCCCCHHHHHHHHH
T ss_conf             114543025667654798899999999982998899999987579999862899864-8988980798888899999998


Q ss_pred             HHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             21100234440354026654600468999999861989999088798989899999998347980997898999999999
Q gi|254781102|r  375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE  454 (497)
Q Consensus       375 ~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~  454 (497)
T Consensus       340 ~~~----~~i~lI~G-G~~Kg~d~~~l-~~~~~~~~~~v~~~-----G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~  408 (445)
T PRK04308        340 GLQ----NPLFVILG-GMGKGQDFTPL-RDALAGKAKGVFLI-----GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYA  408 (445)
T ss_pred             HCC----CCEEEEEC-CCCCCCCHHHH-HHHHHHHCEEEEEE-----CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
T ss_conf             277----97799976-76677786999-99987525699998-----979999999886379855876879999999997


Q ss_pred             HCCCCCEEEEECCCCCCC
Q ss_conf             658988999944688663
Q gi|254781102|r  455 MLNKQDVLVVAGKGHETV  472 (497)
Q Consensus       455 ~a~~gDvili~GkG~e~~  472 (497)
T Consensus       409 ~a~~g~~VLl-SPa~aSf  425 (445)
T PRK04308        409 QAEAGDIVLL-SPACASF  425 (445)
T ss_pred             HCCCCCEEEE-CCCCCCC
T ss_conf             4889898998-9734040