HHsearch alignment for GI: 254781102 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=371.09 Aligned_cols=340 Identities=22% Similarity=0.309 Sum_probs=234.8
Q ss_pred CCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCC
Q ss_conf 9889998473223--33432234797099979989999999999827620022456543065200012333332102322
Q gi|254781102|r 67 GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 67 GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~ 144 (497)
T Consensus 68 ~~d~vV~SPGI~~~~p~~~~a~~~~i~i~--~eie-----l~~~---~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~ 137 (438)
T PRK04663 68 EADLVVTNPGIALATPEIQPVLAKGIPVV--GDIE-----LFAW---AVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHHH-----HHHH---HCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89999989976998989999998699370--3889-----9976---458978999489982899999999998289970
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22234544332355445767531221111111011223333356676665554310432121112321545543211011
Q gi|254781102|r 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 (497)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e 224 (497)
T Consensus 138 ~~gGNiG~------------p-~~~-------~~~~~~d~~VlElSSfQLe~--~~~~~p~iavilNIs~DHLD~h~s~e 195 (438)
T PRK04663 138 AVGGNIGV------------P-ALD-------LLEQDAELYVLELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMA 195 (438)
T ss_pred EEEEECCC------------H-HHH-------HHHCCCCEEEEECCCCCHHH--HCCCCCCCHHHHCCCHHHHHHHCCHH
T ss_conf 68721571------------6-887-------53046978998445101434--03568633344068876877736999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEE-CC
Q ss_conf 22345542100000012232111254200012221023565322222333322000000145444321122210010-12
Q gi|254781102|r 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FL 303 (497)
Q Consensus 225 ~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 303 (497)
T Consensus 196 ~Y~~aK~rIf~~----~~~~Ivn~dd~~~---~~~--~~~~~~~~fg~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 262 (438)
T PRK04663 196 DYRQAKLRIFDH----AELAVVNRDDKQT---YPD--TASLQLVTFGFDQQEYGLIE----HQGREWLADNGQPVLASNE 262 (438)
T ss_pred HHHHHHHHHHCC----CCEEEECCCHHHH---HHH--HCCCCEEEEECCCCCCCEEE----ECCEEEEEECCEEEEEHHH
T ss_conf 999999998536----9789986535988---877--60785799604620165597----2786999858877663143
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 2343322211057788877520267676311123443345521000135578602300-037868999974121100234
Q gi|254781102|r 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382 (497)
Q Consensus 304 l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~ 382 (497)
T Consensus 263 l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~glpHRlE~v~~~-~gv~~iNDSKaTN~~a~~~Al~~~~--~~~ 339 (438)
T PRK04663 263 LKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYNGLTHRCQVVADN-RGIKWVNDSKATNVASTLAALSGLN--LEG 339 (438)
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEE-CCEEEECCCCCCCHHHHHHHHHHCC--CCC
T ss_conf 0566455687799999999983999789865653358988752899998-9999974787788789999998367--778
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEE
Q ss_conf 44035402665460046899999986198999908879898989999999834798099789899999999965898899
Q gi|254781102|r 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 (497)
Q Consensus 383 r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvi 462 (497)
T Consensus 340 ~i~lI~G-G~~Kg~d~~~-l~~~~~~~~~~~~~~-----G~~~~~~~~----~~~~~~~~~~l~~Av~~a~~~a~~gd~v 408 (438)
T PRK04663 340 KLYLLVG-GVGKGADFSE-LKPVLATLNLQLCCF-----GEDGDQFMP----LHPSARRFETMEDAIESISPQLKSGDMV 408 (438)
T ss_pred CEEEEEC-CCCCCCCHHH-HHHHHHHCCEEEEEE-----CCCHHHHHH----HCCCCEECCCHHHHHHHHHHHCCCCCEE
T ss_conf 4799965-7666668799-999985237699998-----888999974----3245344067999999999867799989
Q ss_pred EEE
Q ss_conf 994
Q gi|254781102|r 463 VVA 465 (497)
Q Consensus 463 li~ 465 (497)
T Consensus 409 LlS 411 (438)
T PRK04663 409 MLS 411 (438)
T ss_pred EEC
T ss_conf 989