HHsearch alignment for GI: 254781102 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=93.10 E-value=0.18 Score=28.73 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHHHHHHHCCC-CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCC----CCC-CCCC----
Q ss_conf 99999982762-0022456543--0652000123333321023222223454----43323554----457-6753----
Q gi|254781102|r 103 SLFASRLYGKH-PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPTS----TISSFAQD----NRL-TTPS---- 166 (497)
Q Consensus 103 ~~la~~~~~~~-~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~~----~~~~~~~~----~~~-TtP~---- 166 (497)
T Consensus 36 ~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiR 115 (325)
T PRK09435 36 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIR 115 (325)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999863017982599742799986889999999999967985899997899998886101038888761479984884
Q ss_pred -----------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -----------12211111110112233333566766655543104321-211123215455432110112234554210
Q gi|254781102|r 167 -----------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 (497)
Q Consensus 167 -----------~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~-diaviTNI~~dHLd~~gs~e~y~~aK~~If 234 (497)
T Consensus 116 s~~srg~lgg~~~~~~~~~~~~~a~g~d~i~iETv--GvGQ~e~~v~~~~d~~~~~~-~p------~~GD~~Q~~K~GIm 186 (325)
T PRK09435 116 PSPSSGTLGGVARKTRETMLLCEAAGFDVILVETV--GVGQSETAVAGMVDFFLLLQ-LP------GAGDELQGIKKGIM 186 (325)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC--CCCHHHHHHHHHCCEEEEEE-CC------CCCCHHHHHHHHHH
T ss_conf 06778886773354999999999779998999706--77714889987426688883-58------87608899886577
Q ss_pred HHCCCCCCCCCCCCCC
Q ss_conf 0000012232111254
Q gi|254781102|r 235 EELLPKESPAIIYADD 250 (497)
Q Consensus 235 ~~~~~~~~~~ViN~Dd 250 (497)
T Consensus 187 Ei----aDi~vVNKaD 198 (325)
T PRK09435 187 EL----ADLIVINKAD 198 (325)
T ss_pred HH----CCEEEEECCC
T ss_conf 50----4268997767