HHsearch alignment for GI: 254781102 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=962.26 Aligned_cols=461 Identities=37% Similarity=0.545 Sum_probs=426.3
Q ss_pred CCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
Q ss_conf 43002453023146898899803887676888999998598899984732233343223479709997998999999999
Q gi|254781102|r 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107 (497)
Q Consensus 28 ~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~ 107 (497)
T Consensus 27 ~~~~~it~DSR~V~~G~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~e~~~~~-----~~~~~~~~i~V~d~r~al~~la~ 101 (953)
T PRK11929 27 AATADLRLDSREVAPGDVFVACRGGASDGRAFIDQALARGAAVVIYEAEGAP-----VAPAGCLALPVADLRKALGELAD 101 (953)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCC-----CCCCCCCEEEECCHHHHHHHHHH
T ss_conf 7645565665417999989994528778899999999869979999166444-----46789719997989999999999
Q ss_pred HHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 98276200--224565430652000123333321023222223454433--23554457675312211111110112233
Q gi|254781102|r 108 RLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 (497)
Q Consensus 108 ~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~--~~~~~~~~TtP~~~~l~~~l~~~~~~g~~ 183 (497)
T Consensus 102 ~fy~~ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~iGTlg~~~~~~~~~~~~~TTP~~~~l~~~l~~~~~~g~~ 181 (953)
T PRK11929 102 EWYGKPSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSIGTLGARLPDGQSLGGSLTTPDVITLHRLLARMRAAGAD 181 (953)
T ss_pred HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98649675887899979997999999999999867998899832454058764467899994899999999999976997
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 33356676665554310432121112321545543211011223455421000000122321112542000122210235
Q gi|254781102|r 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 (497)
Q Consensus 184 ~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~ 263 (497)
T Consensus 182 ~~vmEvSSHgL~q~Rv~gi~fdvaifTNls~DHLDyH~tme~Y~~aK~~LF~~l-~~~~~aViN~Dd~~~~~l~~~~~~~ 260 (953)
T PRK11929 182 AVAMEASSHGLEQGRLDGIRFAVAGFTNLTRDHLDYHGTMEDYEQAKAALFEQW-PPLGAAVINADDPAGERLLASLPAA 260 (953)
T ss_pred EEEEEECHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 999983306776434208787889994797678665489999999999999874-1086699979888899999871278
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 65322222333322000000145444321122210010122343322211057788877520267676311123443345
Q gi|254781102|r 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 (497)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~ 343 (497)
T Consensus 261 ~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~~~i~~~l~~~~~vp 340 (953)
T PRK11929 261 LLTGYALQGSPADVHAYDLQATAHGQVFTLALPDGEAQIVTGLLGRHNISNLLLVAGALSKLGWPLPQIARELAAVSPVD 340 (953)
T ss_pred CEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 58999336787748999999828986899997892799980686312499999999999983999999999886179988
Q ss_pred HHHCCCC--CCCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 5210001--355786023000378689999741211002--344403540266546004689999998619899990887
Q gi|254781102|r 344 GRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 (497)
Q Consensus 344 gR~E~i~--~~~~~~~viiDyahNP~s~~~aL~~l~~~~--~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~ 419 (497)
T Consensus 341 GRmE~v~~~~~~~~~~viVDYAHTpdAl~~~L~~lr~~~~~~~rli~VfGcgGdRD~~KRp~Mg~iA~~~aD~viiT~DN 420 (953)
T PRK11929 341 GRLERVGPTASAQGPLVVVDYAHTPDALARALTALRPVAEANGRLVCVFGCGGNRDKGKRPEMGRIAAELADRVIVTSDN 420 (953)
T ss_pred CCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 87599615666789669998678989999999999976146980999989878776103489999999849989986899
Q ss_pred CCCCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHHHH
Q ss_conf 989898999999983479---8099789899999999965898899994468866358449788679989999998443
Q gi|254781102|r 420 PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 (497)
Q Consensus 420 ~r~e~~~~I~~~i~~g~~---~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l~~ 495 (497)
T Consensus 421 PR~Edp~~I~~dI~~g~~~~~~~~~i~dR~~AI~~ai~~a~~~D~vliaGKGhE~yQ~i~-~~~~~f~Dre~~~~~~~~ 498 (953)
T PRK11929 421 PRDEAPEDIIDQILAGIPAGARALRQSDRALAIMQAIWMAKPGDVILLAGKGHETYQDIG-GRKLFFDDRQWARLALLL 498 (953)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEC-CEEECCCCHHHHHHHHHH
T ss_conf 899999999999985656688669977999999999984799998999876865637879-996237809999999986