HHsearch alignment for GI: 254781102 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.83 E-value=0.22 Score=28.26 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHH---HHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 8775202676763111234433455210001355786023000---37-8689---999741211002344403540266
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNS---LEMILKNIRTITSGRIIVVFGCGG 392 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s---~~~aL~~l~~~~~~r~i~V~G~~G 392 (497)
T Consensus 273 tYa~Il~iPv~vv~-~~~el~~a---l~~---~~~-DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTt 344 (432)
T PRK12724 273 RYADTMGMPFYPVK-DIKKFKET---LAR---DGS-ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHHHHCCCEEEEE-CHHHHHHH---HHH---CCC-CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99998599459951-89999999---985---699-99999299989789999999999998636678851799997889
Q ss_pred CCCCCHHHHHHHHHHHHC----CEEEEC
Q ss_conf 546004689999998619----899990
Q gi|254781102|r 393 DRDQGKRPIMGKIALDLA----DIAIVT 416 (497)
Q Consensus 393 drd~~kr~~mg~~a~~~a----d~vi~t 416 (497)
T Consensus 345 k-----~~dl~~ii~~f~~l~~~~lIfT 367 (432)
T PRK12724 345 S-----YHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred C-----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9-----8999999998426999849997