HHsearch alignment for GI: 254781102 and conserved domain: TIGR01853
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=90.11 E-value=1.1 Score=23.74 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=62.4
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 55743002453023146898899803887676888999998598899984732233343223479709997998999999
Q gi|254781102|r 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 (497)
Q Consensus 25 ~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~ 104 (497)
T Consensus 15 ~g~~~i~~v~~l-~~A~~~~itF~------~n~K~~~~l~~~~AgAv~~~~~~~~~----~~~~~~~~L~v~~P~l~fA~ 83 (336)
T TIGR01853 15 EGDIKISGVAPL-EKAKAEHITFL------ANPKYLKELKSSKAGAVIVSADDQSK----LVPKKCAALVVKDPYLAFAK 83 (336)
T ss_pred CCCEEEEEECCC-CCCCCCCEEEE------CCHHHHHHHHCCCCEEEEEEHHHCCC----CCCCCCCEEEECCCHHHHHH
T ss_conf 676688530763-35880226653------38047876515774079971566178----55232505781781799999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999982762002
Q gi|254781102|r 105 FASRLYGKHPEN 116 (497)
Q Consensus 105 la~~~~~~~~~~ 116 (497)
T Consensus 84 ~~~~F~~~~~~~ 95 (336)
T TIGR01853 84 VAELFDPPPKRL 95 (336)
T ss_pred HHHHHCCCCCCH
T ss_conf 998608876501